Query 003308
Match_columns 832
No_of_seqs 398 out of 2361
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 20:46:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vu4_A KMHSV2; beta-propeller 99.9 8E-26 2.7E-30 246.5 31.9 226 17-412 30-272 (355)
2 3ow8_A WD repeat-containing pr 99.9 3.2E-24 1.1E-28 231.0 32.9 238 19-424 50-292 (321)
3 4gqb_B Methylosome protein 50; 99.9 2.3E-24 8E-29 235.5 31.7 228 18-411 94-331 (344)
4 1got_B GT-beta; complex (GTP-b 99.9 6.5E-23 2.2E-27 221.3 36.0 240 19-425 69-315 (340)
5 1vyh_C Platelet-activating fac 99.9 3.1E-23 1.1E-27 230.4 33.5 238 18-424 120-382 (410)
6 3ow8_A WD repeat-containing pr 99.9 1.2E-22 4.2E-27 218.6 33.5 222 19-409 94-319 (321)
7 4h5i_A Guanine nucleotide-exch 99.9 9.7E-23 3.3E-27 223.5 33.1 227 26-411 103-343 (365)
8 2ynn_A Coatomer subunit beta'; 99.9 2.1E-22 7.2E-27 214.0 34.1 237 18-422 26-270 (304)
9 4g56_B MGC81050 protein; prote 99.9 4.4E-23 1.5E-27 225.4 26.9 234 18-417 106-349 (357)
10 1vyh_C Platelet-activating fac 99.9 1.7E-22 5.7E-27 224.6 30.3 242 19-409 164-409 (410)
11 3frx_A Guanine nucleotide-bind 99.9 1.2E-21 4E-26 209.9 34.5 246 19-411 32-317 (319)
12 4gqb_B Methylosome protein 50; 99.9 1.9E-22 6.3E-27 220.4 28.7 240 17-425 41-302 (344)
13 2ynn_A Coatomer subunit beta'; 99.9 6E-22 2E-26 210.5 31.3 219 39-424 4-230 (304)
14 1nr0_A Actin interacting prote 99.9 6.7E-22 2.3E-26 231.2 34.5 236 16-420 28-279 (611)
15 2pbi_B Guanine nucleotide-bind 99.9 1.4E-21 4.9E-26 212.8 34.2 243 18-425 77-329 (354)
16 1nr0_A Actin interacting prote 99.9 1.8E-21 6.3E-26 227.5 36.9 255 17-423 70-368 (611)
17 1got_B GT-beta; complex (GTP-b 99.9 1.8E-21 6.1E-26 210.1 32.5 222 18-408 110-340 (340)
18 1erj_A Transcriptional repress 99.9 2.7E-21 9.3E-26 213.1 34.6 250 17-423 75-353 (393)
19 4gga_A P55CDC, cell division c 99.9 7.5E-21 2.6E-25 210.8 36.0 273 18-415 116-399 (420)
20 2pm7_B Protein transport prote 99.9 3.5E-21 1.2E-25 203.8 30.1 247 18-413 22-287 (297)
21 4ery_A WD repeat-containing pr 99.9 1.7E-20 5.7E-25 198.1 33.9 238 19-424 37-281 (312)
22 3k26_A Polycomb protein EED; W 99.9 6.9E-21 2.4E-25 202.1 31.1 294 18-410 35-365 (366)
23 3iz6_a 40S ribosomal protein R 99.9 4.8E-21 1.7E-25 210.1 30.7 268 18-412 79-376 (380)
24 1erj_A Transcriptional repress 99.9 7.2E-21 2.5E-25 209.7 32.1 233 18-412 135-390 (393)
25 2pbi_B Guanine nucleotide-bind 99.9 1.5E-20 5.1E-25 204.8 32.5 223 18-408 119-354 (354)
26 3fm0_A Protein CIAO1; WDR39,SG 99.9 2.6E-20 8.9E-25 201.7 32.6 243 18-413 29-285 (345)
27 4ery_A WD repeat-containing pr 99.9 5.2E-20 1.8E-24 194.3 33.2 216 40-422 15-234 (312)
28 2xzm_R RACK1; ribosome, transl 99.9 7.5E-20 2.6E-24 197.3 35.1 239 19-415 41-289 (343)
29 4ggc_A P55CDC, cell division c 99.9 1.8E-19 6E-24 188.3 36.7 270 18-412 36-316 (318)
30 3iz6_a 40S ribosomal protein R 99.9 4.1E-21 1.4E-25 210.7 25.4 266 30-418 49-336 (380)
31 2ymu_A WD-40 repeat protein; u 99.9 3.9E-20 1.3E-24 211.1 33.5 217 18-408 356-577 (577)
32 3vl1_A 26S proteasome regulato 99.9 1.7E-20 5.8E-25 205.0 29.1 185 117-421 119-333 (420)
33 2ymu_A WD-40 repeat protein; u 99.9 1.7E-19 5.8E-24 205.7 38.2 232 18-424 274-510 (577)
34 3zwl_B Eukaryotic translation 99.9 1.9E-19 6.5E-24 190.8 35.7 250 18-424 44-317 (369)
35 4g56_B MGC81050 protein; prote 99.9 1.5E-20 5.1E-25 205.3 26.8 242 18-424 17-271 (357)
36 3frx_A Guanine nucleotide-bind 99.9 3E-19 1E-23 191.1 34.3 183 117-421 40-237 (319)
37 3jrp_A Fusion protein of prote 99.9 6.6E-20 2.3E-24 195.5 28.9 249 18-414 23-290 (379)
38 3vl1_A 26S proteasome regulato 99.9 6.4E-20 2.2E-24 200.4 29.1 252 19-414 111-368 (420)
39 3mmy_A MRNA export factor; mRN 99.9 7.6E-20 2.6E-24 193.8 28.6 271 19-412 55-347 (368)
40 4aez_A CDC20, WD repeat-contai 99.9 3.6E-19 1.2E-23 195.8 34.7 272 18-416 104-385 (401)
41 1gxr_A ESG1, transducin-like e 99.9 6.1E-19 2.1E-23 184.9 34.5 262 17-409 62-335 (337)
42 3ei3_B DNA damage-binding prot 99.9 5.8E-19 2E-23 191.4 35.3 221 40-423 65-294 (383)
43 4a11_B DNA excision repair pro 99.9 6.4E-20 2.2E-24 197.7 27.4 242 26-419 22-284 (408)
44 1r5m_A SIR4-interacting protei 99.9 8E-20 2.7E-24 197.6 28.3 275 18-410 120-424 (425)
45 3f3f_A Nucleoporin SEH1; struc 99.9 1.2E-19 4.1E-24 189.3 28.4 265 18-418 23-344 (351)
46 4aow_A Guanine nucleotide-bind 99.9 8.4E-19 2.9E-23 184.9 34.5 244 18-412 51-338 (340)
47 3bg1_A Protein SEC13 homolog; 99.9 5.2E-20 1.8E-24 196.8 25.1 251 18-413 26-295 (316)
48 4a11_B DNA excision repair pro 99.9 3E-19 1E-23 192.4 31.2 248 18-417 56-371 (408)
49 1sq9_A Antiviral protein SKI8; 99.9 1E-19 3.5E-24 196.9 27.6 109 295-419 201-330 (397)
50 2hes_X YDR267CP; beta-propelle 99.9 1.4E-19 4.7E-24 194.8 28.4 231 18-411 70-328 (330)
51 1r5m_A SIR4-interacting protei 99.9 3E-19 1E-23 193.1 31.2 247 20-423 60-331 (425)
52 2ovr_B FBW7, F-BOX/WD repeat p 99.9 3.6E-19 1.2E-23 197.9 32.4 294 18-412 130-443 (445)
53 3v7d_B Cell division control p 99.9 5.2E-19 1.8E-23 196.8 33.3 247 18-415 133-385 (464)
54 1sq9_A Antiviral protein SKI8; 99.9 1.2E-19 4E-24 196.5 26.8 234 19-412 83-396 (397)
55 3sfz_A APAF-1, apoptotic pepti 99.8 1.5E-18 5.2E-23 217.0 40.7 326 18-423 627-1004(1249)
56 3odt_A Protein DOA1; ubiquitin 99.8 1.5E-18 5.2E-23 180.3 32.9 259 18-413 29-298 (313)
57 3fm0_A Protein CIAO1; WDR39,SG 99.8 6.4E-19 2.2E-23 190.7 30.7 237 18-413 74-337 (345)
58 1gxr_A ESG1, transducin-like e 99.8 1.1E-18 3.7E-23 183.0 31.5 107 297-422 159-265 (337)
59 1p22_A F-BOX/WD-repeat protein 99.8 5E-19 1.7E-23 196.8 30.4 219 18-413 144-367 (435)
60 2hes_X YDR267CP; beta-propelle 99.8 8.5E-19 2.9E-23 188.6 30.7 232 20-411 26-280 (330)
61 2xzm_R RACK1; ribosome, transl 99.8 4E-18 1.4E-22 183.8 35.8 174 117-413 49-246 (343)
62 3gre_A Serine/threonine-protei 99.8 1.2E-19 4.3E-24 200.2 22.9 241 18-423 76-371 (437)
63 3dm0_A Maltose-binding peripla 99.8 1.3E-18 4.5E-23 205.7 33.1 238 19-421 396-642 (694)
64 3zwl_B Eukaryotic translation 99.8 7.9E-18 2.7E-22 178.4 35.8 187 117-419 54-257 (369)
65 4e54_B DNA damage-binding prot 99.8 4E-19 1.4E-23 198.2 25.9 115 295-424 225-340 (435)
66 1k8k_C P40, ARP2/3 complex 41 99.8 1.6E-18 5.4E-23 185.1 29.2 231 18-414 20-277 (372)
67 2pm9_A Protein WEB1, protein t 99.8 2.1E-19 7.1E-24 195.4 22.5 240 18-417 79-343 (416)
68 1pgu_A Actin interacting prote 99.8 5.4E-18 1.8E-22 193.5 35.3 114 294-423 459-585 (615)
69 3ei3_B DNA damage-binding prot 99.8 1.7E-18 5.8E-23 187.7 29.6 266 19-411 87-382 (383)
70 2w18_A PALB2, fancn, partner a 99.8 1.1E-18 3.9E-23 191.7 27.9 188 115-409 155-355 (356)
71 3i2n_A WD repeat-containing pr 99.8 7.1E-19 2.4E-23 186.3 25.4 249 18-412 81-354 (357)
72 3k26_A Polycomb protein EED; W 99.8 9.8E-19 3.4E-23 185.5 25.6 191 117-414 44-263 (366)
73 3sfz_A APAF-1, apoptotic pepti 99.8 1.3E-18 4.6E-23 217.4 30.8 109 293-418 1057-1165(1249)
74 3mkq_A Coatomer beta'-subunit; 99.8 6.4E-18 2.2E-22 200.9 35.0 239 17-423 24-271 (814)
75 2j04_B YDR362CP, TAU91; beta p 99.8 3.8E-19 1.3E-23 206.2 23.6 240 19-411 226-517 (524)
76 2pm7_B Protein transport prote 99.8 2.5E-18 8.4E-23 182.0 27.8 181 117-412 31-239 (297)
77 3dm0_A Maltose-binding peripla 99.8 2.2E-18 7.7E-23 203.7 30.3 225 18-412 442-694 (694)
78 3v7d_B Cell division control p 99.8 5.8E-18 2E-22 188.3 31.6 227 18-415 174-425 (464)
79 3dw8_B Serine/threonine-protei 99.8 1.1E-18 3.8E-23 191.8 24.7 110 295-422 243-383 (447)
80 1pgu_A Actin interacting prote 99.8 5.6E-18 1.9E-22 193.4 31.4 236 17-421 29-293 (615)
81 1p22_A F-BOX/WD-repeat protein 99.8 1.3E-18 4.4E-23 193.5 25.4 228 19-414 184-417 (435)
82 2aq5_A Coronin-1A; WD40 repeat 99.8 9.3E-19 3.2E-23 192.0 23.9 232 24-421 54-310 (402)
83 2j04_B YDR362CP, TAU91; beta p 99.8 3.5E-19 1.2E-23 206.5 20.4 225 25-411 181-428 (524)
84 1yfq_A Cell cycle arrest prote 99.8 2.6E-18 8.9E-23 181.7 25.4 118 297-421 166-292 (342)
85 3gre_A Serine/threonine-protei 99.8 8.2E-19 2.8E-23 193.7 22.0 115 294-424 185-305 (437)
86 2vdu_B TRNA (guanine-N(7)-)-me 99.8 8.3E-18 2.9E-22 188.0 29.8 177 116-409 124-337 (450)
87 3dwl_C Actin-related protein 2 99.8 1.4E-19 4.7E-24 195.2 14.7 200 117-424 33-253 (377)
88 3dwl_C Actin-related protein 2 99.8 2.4E-19 8.1E-24 193.4 16.4 229 18-412 23-282 (377)
89 3bg1_A Protein SEC13 homolog; 99.8 2E-18 6.8E-23 184.6 23.0 209 41-412 6-248 (316)
90 2pm9_A Protein WEB1, protein t 99.8 1.6E-18 5.6E-23 188.3 22.3 116 295-425 182-308 (416)
91 3odt_A Protein DOA1; ubiquitin 99.8 5.8E-17 2E-21 168.4 32.8 210 39-423 9-226 (313)
92 3lrv_A PRE-mRNA-splicing facto 99.8 4.4E-18 1.5E-22 183.2 24.9 104 296-414 187-295 (343)
93 3i2n_A WD repeat-containing pr 99.8 9.9E-18 3.4E-22 177.5 27.1 244 18-415 31-295 (357)
94 3jrp_A Fusion protein of prote 99.8 1.3E-17 4.4E-22 177.8 27.5 213 39-413 2-242 (379)
95 3f3f_A Nucleoporin SEH1; struc 99.8 2.4E-17 8.2E-22 171.8 28.9 105 295-414 128-252 (351)
96 4e54_B DNA damage-binding prot 99.8 1.8E-18 6.2E-23 192.8 20.1 242 18-413 132-432 (435)
97 1l0q_A Surface layer protein; 99.8 1.6E-16 5.4E-21 172.1 34.4 232 19-421 3-243 (391)
98 1k8k_C P40, ARP2/3 complex 41 99.8 2.3E-17 8E-22 176.0 27.2 230 42-423 2-245 (372)
99 3vu4_A KMHSV2; beta-propeller 99.8 5E-18 1.7E-22 184.9 22.4 118 294-413 210-338 (355)
100 3mkq_A Coatomer beta'-subunit; 99.8 1.5E-17 5.2E-22 197.7 28.4 219 40-425 5-231 (814)
101 2xyi_A Probable histone-bindin 99.8 2.6E-17 9E-22 183.4 28.2 242 18-411 141-410 (430)
102 4h5i_A Guanine nucleotide-exch 99.8 2.3E-17 7.7E-22 180.8 26.8 114 301-426 197-316 (365)
103 4aow_A Guanine nucleotide-bind 99.8 3.6E-16 1.2E-20 164.7 34.9 215 40-421 30-256 (340)
104 4gga_A P55CDC, cell division c 99.8 8.8E-17 3E-21 178.1 29.8 229 116-425 124-367 (420)
105 1yfq_A Cell cycle arrest prote 99.8 2.9E-17 9.9E-22 173.6 24.7 222 19-409 71-322 (342)
106 1l0q_A Surface layer protein; 99.8 6.8E-16 2.3E-20 167.1 35.3 234 18-422 44-286 (391)
107 3jro_A Fusion protein of prote 99.8 1.5E-17 5.1E-22 199.8 24.4 249 18-414 22-288 (753)
108 4aez_A CDC20, WD repeat-contai 99.8 2.4E-16 8.1E-21 173.3 31.2 182 115-419 111-301 (401)
109 4ggc_A P55CDC, cell division c 99.8 4.1E-16 1.4E-20 162.7 31.0 228 117-425 45-287 (318)
110 4gq1_A NUP37; propeller, trans 99.8 4.8E-17 1.6E-21 179.6 22.9 258 19-411 102-389 (393)
111 3bws_A Protein LP49; two-domai 99.7 1.6E-15 5.6E-20 166.4 34.7 224 18-411 181-432 (433)
112 3dw8_B Serine/threonine-protei 99.7 1.1E-16 3.7E-21 176.0 24.8 114 294-421 192-326 (447)
113 2oaj_A Protein SNI1; WD40 repe 99.7 1.3E-16 4.5E-21 196.0 27.1 199 46-413 15-244 (902)
114 2ovr_B FBW7, F-BOX/WD repeat p 99.7 4.8E-16 1.7E-20 172.7 29.0 178 117-421 139-318 (445)
115 3lrv_A PRE-mRNA-splicing facto 99.7 4.7E-17 1.6E-21 175.1 19.3 111 294-421 142-254 (343)
116 3mmy_A MRNA export factor; mRN 99.7 4.3E-16 1.5E-20 165.0 25.2 260 39-423 30-316 (368)
117 2xyi_A Probable histone-bindin 99.7 3E-16 1E-20 174.9 25.1 103 295-413 248-355 (430)
118 2aq5_A Coronin-1A; WD40 repeat 99.7 2E-16 6.8E-21 173.5 21.9 104 296-414 149-257 (402)
119 2vdu_B TRNA (guanine-N(7)-)-me 99.7 3E-16 1E-20 175.4 23.7 106 298-420 168-280 (450)
120 2oaj_A Protein SNI1; WD40 repe 99.7 1.9E-15 6.6E-20 185.6 31.2 234 17-410 28-311 (902)
121 3jro_A Fusion protein of prote 99.7 1.1E-15 3.7E-20 183.6 25.4 210 42-413 3-240 (753)
122 4gq1_A NUP37; propeller, trans 99.7 3.2E-15 1.1E-19 164.9 24.8 203 115-422 109-359 (393)
123 2w18_A PALB2, fancn, partner a 99.7 3.8E-15 1.3E-19 163.8 22.7 55 296-351 300-355 (356)
124 2hqs_A Protein TOLB; TOLB, PAL 99.7 6E-14 2.1E-18 156.6 32.4 239 18-424 144-399 (415)
125 3bws_A Protein LP49; two-domai 99.7 3.8E-14 1.3E-18 155.5 30.1 238 18-419 134-398 (433)
126 1pby_B Quinohemoprotein amine 99.6 5.3E-13 1.8E-17 139.9 31.4 99 302-420 220-319 (337)
127 3u4y_A Uncharacterized protein 99.6 4.9E-13 1.7E-17 141.3 28.8 272 18-411 10-304 (331)
128 2j04_A TAU60, YPL007P, hypothe 99.6 3.2E-14 1.1E-18 165.4 18.4 92 298-410 199-296 (588)
129 1nir_A Nitrite reductase; hemo 99.5 2.1E-12 7.1E-17 150.0 31.4 248 18-422 149-420 (543)
130 2j04_A TAU60, YPL007P, hypothe 99.5 3E-14 1E-18 165.7 15.2 113 295-425 145-268 (588)
131 2hqs_A Protein TOLB; TOLB, PAL 99.5 2.1E-12 7.2E-17 144.1 27.5 101 301-420 247-352 (415)
132 1ri6_A Putative isomerase YBHE 99.5 1.8E-11 6E-16 128.6 31.4 103 299-412 149-263 (343)
133 2ojh_A Uncharacterized protein 99.5 2E-12 6.9E-17 131.8 23.5 99 299-414 149-261 (297)
134 3vgz_A Uncharacterized protein 99.5 2.9E-11 9.9E-16 128.1 32.4 180 117-418 111-310 (353)
135 1nir_A Nitrite reductase; hemo 99.5 4.4E-12 1.5E-16 147.3 27.6 107 299-420 391-523 (543)
136 2z3z_A Dipeptidyl aminopeptida 99.5 1.6E-12 5.5E-17 152.9 22.1 233 117-421 101-353 (706)
137 1ri6_A Putative isomerase YBHE 99.5 2.8E-11 9.6E-16 127.1 28.0 103 299-415 198-312 (343)
138 1jmx_B Amine dehydrogenase; ox 99.4 2.6E-11 8.7E-16 128.0 26.8 94 306-419 238-333 (349)
139 2ecf_A Dipeptidyl peptidase IV 99.4 5.9E-12 2E-16 148.8 23.2 107 302-421 264-377 (741)
140 2ojh_A Uncharacterized protein 99.4 2.4E-11 8.2E-16 123.8 23.6 188 115-421 20-215 (297)
141 3hfq_A Uncharacterized protein 99.4 4.2E-10 1.4E-14 120.1 31.2 105 299-417 207-323 (347)
142 1xfd_A DIP, dipeptidyl aminope 99.4 1E-11 3.5E-16 146.1 20.1 278 18-410 28-341 (723)
143 3scy_A Hypothetical bacterial 99.3 6.6E-10 2.3E-14 119.5 30.8 105 299-415 175-295 (361)
144 3vgz_A Uncharacterized protein 99.3 1.3E-10 4.4E-15 123.1 24.0 194 117-418 69-269 (353)
145 3u4y_A Uncharacterized protein 99.3 5.9E-10 2E-14 117.5 28.9 180 117-414 20-210 (331)
146 3scy_A Hypothetical bacterial 99.3 8.3E-10 2.8E-14 118.7 30.1 107 299-418 231-344 (361)
147 3hfq_A Uncharacterized protein 99.3 1E-09 3.6E-14 117.1 30.2 104 299-412 160-272 (347)
148 2oit_A Nucleoporin 214KDA; NH2 99.3 2E-10 6.8E-15 129.4 24.8 107 294-414 165-281 (434)
149 2ecf_A Dipeptidyl peptidase IV 99.3 2E-10 6.7E-15 135.7 24.1 99 299-414 310-416 (741)
150 1pby_B Quinohemoprotein amine 99.3 5.5E-10 1.9E-14 116.9 24.8 56 117-172 11-73 (337)
151 3o4h_A Acylamino-acid-releasin 99.3 7.2E-11 2.5E-15 136.2 18.1 91 301-409 175-274 (582)
152 1xfd_A DIP, dipeptidyl aminope 99.3 7.6E-11 2.6E-15 138.7 18.2 52 116-167 36-103 (723)
153 1k32_A Tricorn protease; prote 99.2 2.9E-10 9.9E-15 141.1 22.6 104 300-422 357-471 (1045)
154 2oit_A Nucleoporin 214KDA; NH2 99.2 2.3E-11 7.9E-16 137.1 11.3 108 296-421 113-232 (434)
155 2z3z_A Dipeptidyl aminopeptida 99.2 2.4E-09 8.4E-14 125.8 28.9 96 299-412 331-436 (706)
156 1jof_A Carboxy-CIS,CIS-muconat 99.2 2.8E-09 9.5E-14 115.9 26.0 104 300-413 166-293 (365)
157 1k32_A Tricorn protease; prote 99.2 4.7E-10 1.6E-14 139.3 21.3 95 299-410 398-501 (1045)
158 1z68_A Fibroblast activation p 99.2 1.3E-10 4.5E-15 137.2 14.5 112 18-168 27-143 (719)
159 3o4h_A Acylamino-acid-releasin 99.2 5.9E-10 2E-14 128.5 19.1 98 303-422 134-237 (582)
160 1jmx_B Amine dehydrogenase; ox 99.2 3.6E-09 1.2E-13 111.4 23.4 57 117-173 21-83 (349)
161 1jof_A Carboxy-CIS,CIS-muconat 99.1 7.3E-09 2.5E-13 112.6 24.8 77 323-412 255-342 (365)
162 1z68_A Fibroblast activation p 99.0 1.3E-09 4.4E-14 128.7 13.3 51 117-167 36-102 (719)
163 4a5s_A Dipeptidyl peptidase 4 99.0 6.5E-09 2.2E-13 124.1 17.5 111 18-168 28-145 (740)
164 2oiz_A Aromatic amine dehydrog 98.9 2.4E-07 8.1E-12 101.4 27.8 104 299-421 219-346 (361)
165 4a5s_A Dipeptidyl peptidase 4 98.9 4.1E-08 1.4E-12 117.3 19.0 52 117-168 36-105 (740)
166 3pe7_A Oligogalacturonate lyas 98.9 1.8E-07 6.2E-12 100.7 22.2 96 301-411 264-382 (388)
167 3dsm_A Uncharacterized protein 98.8 2.6E-06 8.8E-11 91.6 30.1 101 300-418 202-308 (328)
168 3azo_A Aminopeptidase; POP fam 98.8 2.7E-07 9.1E-12 107.6 21.0 104 301-421 217-334 (662)
169 3pe7_A Oligogalacturonate lyas 98.8 5.8E-07 2E-11 96.7 22.0 100 298-413 165-275 (388)
170 1q7f_A NHL, brain tumor CG1071 98.7 4.9E-06 1.7E-10 86.1 27.9 98 297-411 181-280 (286)
171 3dsm_A Uncharacterized protein 98.7 2.2E-06 7.5E-11 92.1 24.8 178 117-412 64-254 (328)
172 3c5m_A Oligogalacturonate lyas 98.7 2.8E-07 9.4E-12 98.9 17.7 102 301-418 264-389 (396)
173 3fvz_A Peptidyl-glycine alpha- 98.7 3.6E-06 1.2E-10 90.1 25.5 96 299-411 216-322 (329)
174 2gop_A Trilobed protease; beta 98.6 8.7E-06 3E-10 86.2 26.2 96 301-423 244-341 (347)
175 3c5m_A Oligogalacturonate lyas 98.6 8.3E-07 2.8E-11 95.2 18.2 98 299-412 166-274 (396)
176 2gop_A Trilobed protease; beta 98.6 3.6E-06 1.2E-10 89.2 22.8 89 302-418 201-297 (347)
177 1qks_A Cytochrome CD1 nitrite 98.5 7.6E-05 2.6E-09 87.2 33.0 189 117-412 218-422 (567)
178 3no2_A Uncharacterized protein 98.5 2.5E-05 8.6E-10 82.4 26.1 103 298-418 143-257 (276)
179 3e5z_A Putative gluconolactona 98.5 4.5E-05 1.5E-09 79.5 27.5 88 300-411 192-284 (296)
180 1qks_A Cytochrome CD1 nitrite 98.5 2.9E-05 9.9E-10 90.8 28.6 183 116-413 176-375 (567)
181 1xip_A Nucleoporin NUP159; bet 98.5 3.8E-06 1.3E-10 93.8 19.0 82 298-399 143-232 (388)
182 2dg1_A DRP35, lactonase; beta 98.4 0.00017 5.7E-09 76.1 30.0 85 301-402 204-301 (333)
183 3no2_A Uncharacterized protein 98.4 1.2E-05 4E-10 84.9 20.3 172 117-412 15-196 (276)
184 3azo_A Aminopeptidase; POP fam 98.4 1.2E-05 4E-10 93.7 21.5 94 302-414 266-370 (662)
185 2xdw_A Prolyl endopeptidase; a 98.4 8.1E-05 2.8E-09 88.2 27.7 98 300-413 310-416 (710)
186 1pjx_A Dfpase, DIISOPROPYLFLUO 98.3 0.00021 7.3E-09 74.2 27.4 96 300-412 197-300 (314)
187 2mad_H Methylamine dehydrogena 98.3 0.00023 7.8E-09 78.5 28.1 102 299-417 232-356 (373)
188 3sjl_D Methylamine dehydrogena 98.3 0.00031 1.1E-08 78.4 28.4 103 299-418 245-370 (386)
189 3fvz_A Peptidyl-glycine alpha- 98.3 2.4E-05 8.3E-10 83.6 18.5 103 300-418 165-284 (329)
190 2xdw_A Prolyl endopeptidase; a 98.2 0.00013 4.4E-09 86.5 25.8 98 300-410 258-365 (710)
191 2dg1_A DRP35, lactonase; beta 98.2 0.00059 2E-08 71.8 28.2 95 301-410 162-262 (333)
192 1rwi_B Serine/threonine-protei 98.2 0.00012 4.1E-09 74.4 21.1 96 300-412 170-265 (270)
193 2oiz_A Aromatic amine dehydrog 98.2 4.1E-06 1.4E-10 91.5 9.8 98 299-413 29-142 (361)
194 3e5z_A Putative gluconolactona 98.2 0.00021 7E-09 74.4 22.4 91 301-410 153-245 (296)
195 3g4e_A Regucalcin; six bladed 98.0 0.002 6.8E-08 67.6 25.7 88 322-418 149-236 (297)
196 2bkl_A Prolyl endopeptidase; m 97.9 0.00038 1.3E-08 82.4 21.1 97 302-414 253-352 (695)
197 1yr2_A Prolyl oligopeptidase; 97.9 0.00092 3.1E-08 79.7 24.2 97 300-412 340-442 (741)
198 3g4e_A Regucalcin; six bladed 97.9 0.0066 2.2E-07 63.6 28.2 84 301-401 171-262 (297)
199 1mda_H Methylamine dehydrogena 97.9 0.0011 3.7E-08 73.4 22.4 54 118-173 47-114 (368)
200 2ece_A 462AA long hypothetical 97.9 0.0028 9.7E-08 71.9 25.9 85 323-419 322-432 (462)
201 2hz6_A Endoplasmic reticulum t 97.9 5.5E-06 1.9E-10 91.0 3.7 93 298-413 99-194 (369)
202 2ghs_A AGR_C_1268P; regucalcin 97.9 0.018 6.1E-07 61.4 31.0 84 301-402 201-293 (326)
203 2z2n_A Virginiamycin B lyase; 97.8 0.017 5.8E-07 58.8 29.4 92 300-409 161-253 (299)
204 3c75_H MADH, methylamine dehyd 97.8 0.0007 2.4E-08 76.4 20.5 75 327-418 324-409 (426)
205 2bkl_A Prolyl endopeptidase; m 97.8 0.00057 2E-08 80.8 18.7 94 301-413 202-306 (695)
206 3hrp_A Uncharacterized protein 97.7 0.0085 2.9E-07 66.6 26.3 73 323-410 324-409 (409)
207 1xip_A Nucleoporin NUP159; bet 97.7 0.00018 6.1E-09 80.4 12.5 90 299-413 104-193 (388)
208 1kb0_A Quinohemoprotein alcoho 97.7 0.0029 1E-07 75.2 23.7 104 298-419 334-515 (677)
209 3nol_A Glutamine cyclotransfer 97.7 0.0041 1.4E-07 65.7 22.1 57 117-173 65-125 (262)
210 2iwa_A Glutamine cyclotransfer 97.7 0.011 3.9E-07 62.5 25.6 175 117-412 44-238 (266)
211 2qe8_A Uncharacterized protein 97.6 0.00041 1.4E-08 74.6 14.0 57 117-173 93-163 (343)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 97.6 0.0094 3.2E-07 61.6 23.8 100 301-412 153-257 (314)
213 3sjl_D Methylamine dehydrogena 97.6 0.00022 7.7E-09 79.5 10.9 103 300-418 58-176 (386)
214 3nok_A Glutaminyl cyclase; bet 97.6 0.0033 1.1E-07 66.6 19.2 56 117-173 75-134 (268)
215 1q7f_A NHL, brain tumor CG1071 97.6 0.00071 2.4E-08 69.7 13.9 93 299-409 140-236 (286)
216 1yr2_A Prolyl oligopeptidase; 97.6 0.0044 1.5E-07 73.8 22.7 98 300-412 242-351 (741)
217 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.13 4.5E-06 55.0 32.4 94 297-412 245-338 (376)
218 1rwi_B Serine/threonine-protei 97.5 0.0024 8.1E-08 64.7 17.3 95 300-411 128-222 (270)
219 2ece_A 462AA long hypothetical 97.5 0.014 4.7E-07 66.3 23.7 104 299-412 226-353 (462)
220 1kb0_A Quinohemoprotein alcoho 97.5 0.0036 1.2E-07 74.4 19.9 85 299-400 455-540 (677)
221 2z2n_A Virginiamycin B lyase; 97.4 0.13 4.5E-06 52.1 31.3 92 300-411 203-295 (299)
222 2qc5_A Streptogramin B lactona 97.4 0.16 5.4E-06 51.5 30.3 91 301-409 167-258 (300)
223 2mad_H Methylamine dehydrogena 97.4 0.0013 4.5E-08 72.4 13.6 94 302-412 48-157 (373)
224 3mbr_X Glutamine cyclotransfer 97.3 0.033 1.1E-06 58.2 23.1 57 117-173 43-103 (243)
225 2ghs_A AGR_C_1268P; regucalcin 97.3 0.093 3.2E-06 55.8 27.4 95 301-409 161-258 (326)
226 3hrp_A Uncharacterized protein 97.3 0.02 6.9E-07 63.5 22.8 107 300-421 239-363 (409)
227 1mda_H Methylamine dehydrogena 97.2 0.00068 2.3E-08 75.0 9.7 94 302-411 47-158 (368)
228 1yiq_A Quinohemoprotein alcoho 97.2 0.031 1.1E-06 66.5 24.4 57 346-419 457-513 (689)
229 2qc5_A Streptogramin B lactona 97.1 0.29 9.8E-06 49.5 27.7 89 301-409 209-298 (300)
230 2iwa_A Glutamine cyclotransfer 97.1 0.047 1.6E-06 57.7 21.7 102 299-418 84-188 (266)
231 1yiq_A Quinohemoprotein alcoho 97.1 0.028 9.7E-07 66.9 22.0 57 117-173 80-149 (689)
232 3c75_H MADH, methylamine dehyd 97.1 0.0015 5.3E-08 73.6 10.5 102 301-418 99-216 (426)
233 3iuj_A Prolyl endopeptidase; h 97.0 0.025 8.6E-07 66.9 20.0 95 300-412 304-406 (693)
234 1fwx_A Nitrous oxide reductase 96.9 0.021 7.1E-07 66.8 18.0 104 301-411 254-361 (595)
235 2hz6_A Endoplasmic reticulum t 96.9 0.00028 9.6E-09 77.3 2.2 95 298-414 56-152 (369)
236 3q7m_A Lipoprotein YFGL, BAMB; 96.8 0.25 8.4E-06 52.9 24.5 57 117-173 63-131 (376)
237 1kv9_A Type II quinohemoprotei 96.8 0.08 2.7E-06 62.7 22.2 57 117-173 76-145 (668)
238 3dr2_A Exported gluconolactona 96.8 0.22 7.7E-06 51.9 23.3 92 301-409 169-265 (305)
239 3nok_A Glutaminyl cyclase; bet 96.6 0.08 2.7E-06 56.0 17.9 103 299-418 114-217 (268)
240 2ad6_A Methanol dehydrogenase 96.5 0.16 5.6E-06 59.0 22.2 56 346-418 446-501 (571)
241 3nol_A Glutamine cyclotransfer 96.5 0.073 2.5E-06 56.1 16.9 103 299-418 105-208 (262)
242 3iuj_A Prolyl endopeptidase; h 96.2 0.02 6.8E-07 67.8 12.4 109 299-421 153-279 (693)
243 3mbr_X Glutamine cyclotransfer 96.2 0.38 1.3E-05 50.1 20.6 101 299-418 83-186 (243)
244 1kv9_A Type II quinohemoprotei 96.2 0.17 6E-06 59.8 20.1 85 299-400 436-521 (668)
245 3hxj_A Pyrrolo-quinoline quino 96.2 0.3 1E-05 50.5 19.6 91 301-412 235-325 (330)
246 3amr_A 3-phytase; beta-propell 96.1 0.98 3.3E-05 49.6 23.9 100 300-410 152-262 (355)
247 2qe8_A Uncharacterized protein 95.9 0.066 2.2E-06 57.3 13.6 109 300-410 92-223 (343)
248 1flg_A Protein (quinoprotein e 95.8 0.27 9.2E-06 57.3 19.3 83 299-400 464-549 (582)
249 3dr2_A Exported gluconolactona 95.7 0.062 2.1E-06 56.2 11.8 84 298-397 64-147 (305)
250 1w6s_A Methanol dehydrogenase 95.4 1.3 4.3E-05 52.0 22.8 29 390-418 482-510 (599)
251 1fwx_A Nitrous oxide reductase 95.2 0.24 8.2E-06 57.9 15.7 100 295-400 293-407 (595)
252 1flg_A Protein (quinoprotein e 94.6 3.8 0.00013 47.5 23.8 56 118-173 79-145 (582)
253 2ad6_A Methanol dehydrogenase 93.8 3.4 0.00012 47.8 21.2 57 117-173 73-143 (571)
254 1w6s_A Methanol dehydrogenase 93.5 4.6 0.00016 47.2 21.6 57 117-173 73-149 (599)
255 3qqz_A Putative uncharacterize 92.6 2.3 7.7E-05 44.5 15.4 82 316-414 21-103 (255)
256 1npe_A Nidogen, entactin; glyc 92.2 10 0.00036 38.1 30.9 78 322-418 167-245 (267)
257 1bpo_A Protein (clathrin); cla 91.9 20 0.00069 40.6 27.3 203 117-419 86-297 (494)
258 2xe4_A Oligopeptidase B; hydro 91.7 0.55 1.9E-05 56.2 10.7 96 301-412 201-305 (751)
259 1ijq_A LDL receptor, low-densi 91.4 16 0.00053 38.4 26.9 94 301-410 99-194 (316)
260 1npe_A Nidogen, entactin; glyc 91.1 3.8 0.00013 41.4 14.9 96 299-410 56-154 (267)
261 2xzh_A Clathrin heavy chain 1; 89.7 26 0.0009 38.2 29.7 48 117-164 87-135 (365)
262 2p4o_A Hypothetical protein; p 89.5 2.4 8.3E-05 44.1 12.2 81 310-410 21-103 (306)
263 3v65_B Low-density lipoprotein 89.1 28 0.00095 37.7 23.2 74 322-411 202-277 (386)
264 3pbp_A Nucleoporin NUP82; beta 89.1 2.7 9.2E-05 47.4 12.5 108 300-411 40-158 (452)
265 3ei3_A DNA damage-binding prot 87.1 20 0.00069 45.2 20.2 95 301-411 904-999 (1158)
266 3hxj_A Pyrrolo-quinoline quino 86.7 1.6 5.5E-05 44.8 8.5 89 297-408 153-241 (330)
267 2fp8_A Strictosidine synthase; 85.2 7.2 0.00025 40.6 12.7 86 299-400 163-248 (322)
268 2fp8_A Strictosidine synthase; 85.1 3.9 0.00013 42.7 10.6 91 302-411 102-216 (322)
269 4a2l_A BT_4663, two-component 85.0 68 0.0023 37.9 31.9 95 299-411 375-480 (795)
270 3v64_C Agrin; beta propeller, 84.7 45 0.0015 35.5 23.8 94 301-411 138-234 (349)
271 3p5b_L Low density lipoprotein 84.4 51 0.0017 35.9 25.4 95 301-411 181-277 (400)
272 2xe4_A Oligopeptidase B; hydro 83.6 2.1 7.1E-05 51.2 8.5 75 319-411 170-256 (751)
273 2xzh_A Clathrin heavy chain 1; 83.3 57 0.002 35.6 26.6 105 16-174 76-198 (365)
274 1xi4_A Clathrin heavy chain; a 82.3 16 0.00054 47.1 15.7 48 117-164 86-134 (1630)
275 1bpo_A Protein (clathrin); cla 82.0 75 0.0025 36.1 25.3 105 16-174 75-197 (494)
276 2p9w_A MAL S 1 allergenic prot 82.0 5.3 0.00018 43.4 10.1 99 299-411 98-215 (334)
277 3sov_A LRP-6, low-density lipo 81.7 56 0.0019 34.4 22.8 95 301-411 101-197 (318)
278 3v65_B Low-density lipoprotein 80.6 67 0.0023 34.6 31.9 101 301-418 225-325 (386)
279 3sre_A PON1, serum paraoxonase 80.4 10 0.00035 41.4 11.9 96 300-413 138-254 (355)
280 2p4o_A Hypothetical protein; p 78.0 27 0.00091 36.0 13.8 96 299-411 51-147 (306)
281 3m0c_C LDL receptor, low-densi 77.1 1.3E+02 0.0046 36.1 25.3 96 300-411 492-589 (791)
282 1k3i_A Galactose oxidase precu 76.8 5.4 0.00019 46.5 8.9 95 302-412 220-324 (656)
283 3amr_A 3-phytase; beta-propell 75.5 10 0.00034 41.6 9.9 99 297-411 46-162 (355)
284 3tc9_A Hypothetical hydrolase; 71.9 25 0.00084 38.9 12.2 94 301-411 159-257 (430)
285 3kya_A Putative phosphatase; s 71.8 1E+02 0.0034 35.1 17.4 29 323-351 311-339 (496)
286 3qqz_A Putative uncharacterize 70.3 1E+02 0.0035 31.7 25.7 73 322-408 173-250 (255)
287 3zwu_A Alkaline phosphatase PH 69.3 11 0.00038 44.0 9.0 60 325-398 479-548 (592)
288 3tc9_A Hypothetical hydrolase; 69.0 15 0.00051 40.7 9.6 72 324-411 228-301 (430)
289 4hw6_A Hypothetical protein, I 67.8 48 0.0016 36.6 13.5 102 298-408 247-371 (433)
290 3m0c_C LDL receptor, low-densi 67.3 2.2E+02 0.0074 34.3 33.5 102 302-418 538-639 (791)
291 2p9w_A MAL S 1 allergenic prot 66.3 34 0.0012 37.0 11.4 101 299-414 33-169 (334)
292 3a9g_A Putative uncharacterize 63.3 30 0.001 37.1 10.4 93 299-400 47-154 (354)
293 2ism_A Putative oxidoreductase 63.2 36 0.0012 36.3 11.0 93 299-400 49-154 (352)
294 1cru_A Protein (soluble quinop 62.9 37 0.0013 38.0 11.4 64 323-399 28-98 (454)
295 3v64_C Agrin; beta propeller, 62.8 1.6E+02 0.0054 31.1 32.7 79 323-418 204-282 (349)
296 4a2l_A BT_4663, two-component 62.6 2.4E+02 0.0081 33.1 31.3 91 300-411 426-526 (795)
297 3p5b_L Low density lipoprotein 60.5 1.9E+02 0.0064 31.3 33.9 102 302-418 226-327 (400)
298 4hw6_A Hypothetical protein, I 59.6 22 0.00074 39.4 8.7 71 325-411 231-304 (433)
299 2ism_A Putative oxidoreductase 59.3 52 0.0018 35.1 11.4 69 324-410 33-113 (352)
300 1xi4_A Clathrin heavy chain; a 58.3 1.2E+02 0.004 39.4 15.4 105 16-174 75-197 (1630)
301 3ei3_A DNA damage-binding prot 58.2 60 0.0021 40.9 13.2 91 302-411 493-591 (1158)
302 3das_A Putative oxidoreductase 55.2 80 0.0027 34.1 12.0 31 322-353 32-62 (347)
303 3pbp_A Nucleoporin NUP82; beta 53.4 51 0.0017 37.1 10.1 84 320-414 123-213 (452)
304 1ijq_A LDL receptor, low-densi 53.3 2.1E+02 0.0071 29.6 34.7 82 322-418 164-245 (316)
305 3v9f_A Two-component system se 53.1 61 0.0021 38.2 11.6 95 301-411 469-568 (781)
306 4a9v_A PHOX; hydrolase, beta-p 52.1 36 0.0012 39.7 8.9 61 324-398 478-548 (592)
307 1k3i_A Galactose oxidase precu 50.2 29 0.001 40.2 8.1 74 326-412 190-275 (656)
308 3sre_A PON1, serum paraoxonase 48.7 58 0.002 35.4 9.6 51 300-353 202-252 (355)
309 2g8s_A Glucose/sorbosone dehyd 47.2 73 0.0025 33.9 10.1 112 292-414 29-174 (353)
310 1cru_A Protein (soluble quinop 46.9 1.2E+02 0.004 33.8 12.0 94 301-402 48-165 (454)
311 3a9g_A Putative uncharacterize 44.9 75 0.0026 34.0 9.7 70 323-410 30-113 (354)
312 3q6k_A 43.2 kDa salivary prote 43.4 2.4E+02 0.0082 30.9 13.5 54 301-354 123-191 (381)
313 3kya_A Putative phosphatase; s 41.8 1E+02 0.0036 35.0 10.6 65 323-402 140-214 (496)
314 1n7d_A LDL receptor, low-densi 41.5 33 0.0011 40.5 6.7 96 299-411 473-571 (699)
315 1n7d_A LDL receptor, low-densi 40.7 56 0.0019 38.6 8.5 97 301-412 519-615 (699)
316 2xbg_A YCF48-like protein; pho 40.4 3.3E+02 0.011 28.1 14.0 72 319-408 160-231 (327)
317 1tl2_A L10, protein (tachylect 39.6 31 0.0011 35.5 5.2 72 323-408 42-113 (236)
318 2wg3_C Hedgehog-interacting pr 36.1 3.3E+02 0.011 30.4 13.5 101 298-402 33-160 (463)
319 3das_A Putative oxidoreductase 35.8 2.3E+02 0.0079 30.5 11.8 101 295-400 47-159 (347)
320 4gq2_M Nucleoporin NUP120; bet 33.0 90 0.0031 38.4 8.8 36 382-417 237-272 (950)
321 1tl2_A L10, protein (tachylect 31.3 83 0.0028 32.4 6.8 67 324-404 90-156 (236)
322 3s94_A LRP-6, low-density lipo 30.1 4.9E+02 0.017 30.0 14.1 97 300-411 17-115 (619)
323 4fhn_B Nucleoporin NUP120; pro 28.4 62 0.0021 40.5 6.4 37 382-418 239-275 (1139)
324 2vpj_A Kelch-like protein 12; 25.1 5.1E+02 0.018 25.7 17.6 51 302-354 176-232 (301)
325 4gq2_M Nucleoporin NUP120; bet 24.9 1.5E+02 0.005 36.5 8.7 31 323-354 237-267 (950)
326 3sbq_A Nitrous-oxide reductase 23.2 1.5E+02 0.0051 34.7 7.6 103 302-411 299-408 (638)
327 2xbg_A YCF48-like protein; pho 23.0 2.2E+02 0.0076 29.5 8.7 62 323-403 123-184 (327)
328 3sov_A LRP-6, low-density lipo 20.8 7.1E+02 0.024 25.7 33.2 79 323-418 167-245 (318)
329 3s94_A LRP-6, low-density lipo 20.1 1E+03 0.035 27.2 27.5 79 323-418 172-250 (619)
No 1
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=8e-26 Score=246.55 Aligned_cols=226 Identities=22% Similarity=0.314 Sum_probs=175.9
Q ss_pred CCcEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
..++|+.|.+++++|||+++ ...+...+.+.+..+.+++.+ .++++++.+
T Consensus 30 dg~~la~g~~~~~~iw~~~~---~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~------------- 79 (355)
T 3vu4_A 30 DQSCLILSTLKSFEIYNVHP---VAHIMSQEMRHLSKVRMLHRT--------------NYVAFVTGV------------- 79 (355)
T ss_dssp TSSEEEEECSSEEEEEEETT---EEEEEEEECSCCCEEEECTTS--------------SEEEEECSS-------------
T ss_pred CCCEEEEEcCCEEEEEecCC---cceeeeeecCCeEEEEEcCCC--------------CEEEEEECC-------------
Confidence 46789999999999999875 344555555567778877532 356666532
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEEEeCCEEEEEECCCC-ceEEEEecCC
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATL-EIEYAILTNP 175 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~r~LAVa~~~~I~vwDl~t~-~~~~tl~t~~ 175 (832)
+++|+|||+++++++.++.+...|.+++++++.++++.+++|++||+.+. +.+.++.+ +
T Consensus 80 -------------------d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~ 139 (355)
T 3vu4_A 80 -------------------KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR-F 139 (355)
T ss_dssp -------------------TTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE-E
T ss_pred -------------------ccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc-C
Confidence 16899999999999999999999999999999999999999999999987 54443332 1
Q ss_pred CccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeecc
Q 003308 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 255 (832)
Q Consensus 176 ~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lG 255 (832)
. +.+++++.+||++
T Consensus 140 ~--------------~~~~~s~~~la~~---------------------------------------------------- 153 (355)
T 3vu4_A 140 G--------------GVCEFSNGLLVYS---------------------------------------------------- 153 (355)
T ss_dssp E--------------EEEEEETTEEEEE----------------------------------------------------
T ss_pred C--------------ceEEEEccEEEEe----------------------------------------------------
Confidence 0 0122222222221
Q ss_pred CccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc---------------E-EEEecc
Q 003308 256 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN---------------V-IAQFRA 319 (832)
Q Consensus 256 d~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~---------------~-l~~~~a 319 (832)
++..+|.|+|||+.+++ + +..+++
T Consensus 154 ----------------------------------------sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 193 (355)
T 3vu4_A 154 ----------------------------------------NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA 193 (355)
T ss_dssp ----------------------------------------ESSCTTCEEEEECCC------------------CCEEECC
T ss_pred ----------------------------------------CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc
Confidence 12456889999999865 2 788999
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEe
Q 003308 320 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 399 (832)
Q Consensus 320 H~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS 399 (832)
|..+|.+|+|+|||++||||+.||+.|+|||+.++ ..+..+.+|.+...|.+++|||||++||+++
T Consensus 194 h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~--------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 194 HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG--------------VLVREFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC--------------CEEEEEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC--------------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 99999999999999999999999976899999886 5677887674456799999999999999999
Q ss_pred CCCcEEEEecCCC
Q 003308 400 SRGTSHLFAINPL 412 (832)
Q Consensus 400 ~DgTVhIwdl~~~ 412 (832)
.|++|+|||+...
T Consensus 260 ~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 260 DKWTLHVFEIFND 272 (355)
T ss_dssp TTCEEEEEESSCC
T ss_pred CCCEEEEEEccCC
Confidence 9999999999764
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.94 E-value=3.2e-24 Score=230.97 Aligned_cols=238 Identities=18% Similarity=0.277 Sum_probs=182.0
Q ss_pred cEEEEEecCCeEEEEeccCC-CeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCccc
Q 003308 19 RVLLLGYRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (832)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~-~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~ 97 (832)
.++..+.++.++|||+.... .....+..|.+.|.++.+.|.. ++++.++.
T Consensus 50 ~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~--------------~~l~s~s~--------------- 100 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL--------------PIAASSSL--------------- 100 (321)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS--------------SEEEEEET---------------
T ss_pred EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC--------------CEEEEEeC---------------
Confidence 45555667779999997622 1223356789999999987632 34544332
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEec
Q 003308 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (832)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t 173 (832)
+++|++||+.+++++.++.. +..|.+++|+ +++|++ +.+++|++||+.+++...++..
T Consensus 101 ------------------D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~ 162 (321)
T 3ow8_A 101 ------------------DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT 162 (321)
T ss_dssp ------------------TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC
T ss_pred ------------------CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC
Confidence 27899999999999999976 5688899997 467777 4678999999999998888766
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeee
Q 003308 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (832)
Q Consensus 174 ~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~ 253 (832)
+... + .-++|+. +|..
T Consensus 163 ~~~~---------------v----~~~~~sp---------------------------dg~~------------------ 178 (321)
T 3ow8_A 163 RGKF---------------I----LSIAYSP---------------------------DGKY------------------ 178 (321)
T ss_dssp SSSC---------------E----EEEEECT---------------------------TSSE------------------
T ss_pred CCce---------------E----EEEEECC---------------------------CCCE------------------
Confidence 5210 1 1123331 1111
Q ss_pred ccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC
Q 003308 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (832)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG 333 (832)
++++..+|.|+|||+.+++++..+++|..+|.+|+|+|+|
T Consensus 179 ----------------------------------------lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~ 218 (321)
T 3ow8_A 179 ----------------------------------------LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218 (321)
T ss_dssp ----------------------------------------EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS
T ss_pred ----------------------------------------EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC
Confidence 2234567899999999999999999999999999999999
Q ss_pred CEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 003308 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (832)
Q Consensus 334 ~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g 413 (832)
++||+|+.||+ |+|||+..+ ..+..+ .++. ..|.+++|+||+++|++++.|++|+|||+.+..
T Consensus 219 ~~l~s~s~dg~-i~iwd~~~~--------------~~~~~~-~~h~-~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 219 QLLVTASDDGY-IKIYDVQHA--------------NLAGTL-SGHA-SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp CEEEEECTTSC-EEEEETTTC--------------CEEEEE-CCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CEEEEEcCCCe-EEEEECCCc--------------ceeEEE-cCCC-CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 99999999998 899999875 344455 4543 459999999999999999999999999999877
Q ss_pred CceeeccCCCC
Q 003308 414 GSVNFQPTDAN 424 (832)
Q Consensus 414 ~~~~~~~H~~~ 424 (832)
....+.+|...
T Consensus 282 ~~~~~~~h~~~ 292 (321)
T 3ow8_A 282 CVHTFFDHQDQ 292 (321)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCc
Confidence 77788888543
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.94 E-value=2.3e-24 Score=235.51 Aligned_cols=228 Identities=17% Similarity=0.230 Sum_probs=166.7
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeE---EeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCC
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHD---LVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~e---llS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg 94 (832)
+++++.+.++.++|||++....... .+..|.+.|+++++.|+. .+|+.++.
T Consensus 94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg--------------~~l~sgs~------------ 147 (344)
T 4gqb_B 94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG--------------TQAVSGSK------------ 147 (344)
T ss_dssp TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS--------------SEEEEEET------------
T ss_pred CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC--------------CEEEEEeC------------
Confidence 5566666666699999987433222 223689999999998853 24554432
Q ss_pred cccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCceEE
Q 003308 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEY 169 (832)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S~---r~LAV-a~~~~I~vwDl~t~~~~~ 169 (832)
+++|++||++++++++++. +...|.+++|++ .+|++ +.|++|++||++++++..
T Consensus 148 ---------------------d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 206 (344)
T 4gqb_B 148 ---------------------DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS 206 (344)
T ss_dssp ---------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE
T ss_pred ---------------------CCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee
Confidence 2779999999999999997 478999999973 46665 568999999999998877
Q ss_pred EEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceec
Q 003308 170 AILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (832)
Q Consensus 170 tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~las 249 (832)
++..... +... ..+++.. . ++.
T Consensus 207 ~~~~~~~------------~~~~-----~~~~~~p-------------~-------------~~~--------------- 228 (344)
T 4gqb_B 207 QIGCSAP------------GYLP-----TSLAWHP-------------Q-------------QSE--------------- 228 (344)
T ss_dssp ECC----------------CCCE-----EEEEECS-------------S-------------CTT---------------
T ss_pred eeeccee------------eccc-----eeeeecC-------------C-------------CCc---------------
Confidence 6643210 0000 1122221 0 000
Q ss_pred eeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003308 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (832)
Q Consensus 250 Gi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaF 329 (832)
.++++..+|.|+|||+.+++++.+|++|..+|.+|+|
T Consensus 229 -------------------------------------------~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f 265 (344)
T 4gqb_B 229 -------------------------------------------VFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265 (344)
T ss_dssp -------------------------------------------EEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred -------------------------------------------ceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 1233457899999999999999999999999999999
Q ss_pred cCCC-CEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCC-EEEEEeCCCcEEEE
Q 003308 330 DPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLF 407 (832)
Q Consensus 330 SPdG-~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~-~LAsgS~DgTVhIw 407 (832)
+|+| ++|||||.||+ |+|||+.++ .+.++ +||. ..|.+|+||||++ +||++|.|++|++|
T Consensus 266 sp~g~~~lasgs~D~~-i~vwd~~~~---------------~~~~~-~~H~-~~V~~v~~sp~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCS-LAVLDSSLS---------------ELFRS-QAHR-DFVRDATWSPLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp CSSSSCCEEEEETTSC-EEEECTTCC---------------EEEEE-CCCS-SCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred ccCCCeEEEEEeCCCe-EEEEECCCC---------------cEEEE-cCCC-CCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence 9998 58999999998 899999875 33455 4654 4599999999986 57799999999999
Q ss_pred ecCC
Q 003308 408 AINP 411 (832)
Q Consensus 408 dl~~ 411 (832)
++.+
T Consensus 328 ~v~~ 331 (344)
T 4gqb_B 328 VVPT 331 (344)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9965
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.93 E-value=6.5e-23 Score=221.33 Aligned_cols=240 Identities=14% Similarity=0.160 Sum_probs=179.1
Q ss_pred cEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccc
Q 003308 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (832)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~ 98 (832)
.++..+.++.++|||+.. +.....+..|.+.|.++.+.|+. .+|+.++.
T Consensus 69 ~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~~~~s~~~--------------~~l~s~~~---------------- 117 (340)
T 1got_B 69 LLLSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSG--------------NYVACGGL---------------- 117 (340)
T ss_dssp EEEEEETTTEEEEEETTT-CCEEEEEECSSSCEEEEEECTTS--------------SEEEEEET----------------
T ss_pred EEEEEeCCCcEEEEECCC-CCcceEeecCCccEEEEEECCCC--------------CEEEEEeC----------------
Confidence 444445556699999986 45556667789999999998743 24554432
Q ss_pred cCCCCCCCCCCCCCCCCCCEEEEEECCCCc----EEEEEe-CCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEEE
Q 003308 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQS----YVHMLK-FRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAI 171 (832)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~----~V~tL~-f~s~V~sV~~S--~r~LAVa~~~~I~vwDl~t~~~~~tl 171 (832)
+++|++||+.+++ ....+. +...|.++.|+ .++++.+.+++|++||+.+++++.++
T Consensus 118 -----------------d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 118 -----------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp -----------------TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred -----------------CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEE
Confidence 2789999998763 445554 46789999996 34555578899999999999988888
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003308 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (832)
Q Consensus 172 ~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi 251 (832)
..|.. ++ .-|++.+ ++.
T Consensus 181 ~~h~~---------------~v----~~~~~~~---------------------------~~~----------------- 197 (340)
T 1got_B 181 TGHTG---------------DV----MSLSLAP---------------------------DTR----------------- 197 (340)
T ss_dssp CCCSS---------------CE----EEEEECT---------------------------TSS-----------------
T ss_pred cCCCC---------------ce----EEEEECC---------------------------CCC-----------------
Confidence 66532 11 1123321 011
Q ss_pred eeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC
Q 003308 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (832)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSP 331 (832)
.++++..||.|+|||+.+++++..|.+|..+|.+|+|+|
T Consensus 198 -----------------------------------------~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p 236 (340)
T 1got_B 198 -----------------------------------------LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236 (340)
T ss_dssp -----------------------------------------EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT
T ss_pred -----------------------------------------EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC
Confidence 123345688999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 332 dG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
+|.+||+++.||+ |+|||+..+ ..+..+........|.+++|+|||++|++++.|++|+|||+..
T Consensus 237 ~~~~l~s~s~d~~-v~iwd~~~~--------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 237 NGNAFATGSDDAT-CRLFDLRAD--------------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp TSSEEEEEETTSC-EEEEETTTT--------------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEcCCCc-EEEEECCCC--------------cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence 9999999999998 899999876 3344442222223599999999999999999999999999988
Q ss_pred CCCceeeccCCCCc
Q 003308 412 LGGSVNFQPTDANF 425 (832)
Q Consensus 412 ~g~~~~~~~H~~~~ 425 (832)
......+.+|....
T Consensus 302 ~~~~~~~~~h~~~v 315 (340)
T 1got_B 302 ADRAGVLAGHDNRV 315 (340)
T ss_dssp CCEEEEEECCSSCE
T ss_pred CcEeeEeecCCCcE
Confidence 77777888885533
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.92 E-value=3.1e-23 Score=230.45 Aligned_cols=238 Identities=14% Similarity=0.237 Sum_probs=186.0
Q ss_pred CcEEEEE-ecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLG-YRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~G-y~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
..+|+.| .++.++|||++. +.....+..|.+.|.++.+.|+. .+|+.++.
T Consensus 120 ~~~l~s~s~Dg~i~vwd~~~-~~~~~~l~~h~~~V~~v~~~~~~--------------~~l~sgs~-------------- 170 (410)
T 1vyh_C 120 FSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSG--------------KLLASCSA-------------- 170 (410)
T ss_dssp SSEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CCEEEEEeCCCeEEEEECCC-CcEEEEEeccCCcEEEEEEcCCC--------------CEEEEEeC--------------
Confidence 3445554 556699999987 56777788899999999998742 24554442
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEe
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~ 172 (832)
+++|++||+.++++++++.. ...|.+++|+ ++.|++ +.+++|++||+.+++++.++.
T Consensus 171 -------------------D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 231 (410)
T 1vyh_C 171 -------------------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231 (410)
T ss_dssp -------------------TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred -------------------CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 26799999999999998864 6789999997 456665 678999999999999988887
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceee
Q 003308 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (832)
Q Consensus 173 t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~ 252 (832)
.|... + +.+++.. ++.
T Consensus 232 ~h~~~---------------v----~~~~~~~---------------------------~g~------------------ 247 (410)
T 1vyh_C 232 GHREW---------------V----RMVRPNQ---------------------------DGT------------------ 247 (410)
T ss_dssp CCSSC---------------E----EEEEECT---------------------------TSS------------------
T ss_pred CCCcc---------------E----EEEEECC---------------------------CCC------------------
Confidence 66320 1 1122221 111
Q ss_pred eccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC
Q 003308 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (832)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPd 332 (832)
.++++..||.|+|||+.+++++..+.+|..+|.+++|+|+
T Consensus 248 ----------------------------------------~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (410)
T 1vyh_C 248 ----------------------------------------LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 287 (410)
T ss_dssp ----------------------------------------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCS
T ss_pred ----------------------------------------EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCc
Confidence 1233457889999999999999999999999999999997
Q ss_pred --------------------CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCC
Q 003308 333 --------------------GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 392 (832)
Q Consensus 333 --------------------G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg 392 (832)
|.+|++|+.||+ |+|||+.++ ..+..+ .|+. ..|.+++|+|+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~--------------~~~~~~-~~h~-~~v~~v~~~~~g 350 (410)
T 1vyh_C 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTG--------------MCLMTL-VGHD-NWVRGVLFHSGG 350 (410)
T ss_dssp CGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTT--------------EEEEEE-ECCS-SCEEEEEECSSS
T ss_pred ccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCC--------------ceEEEE-ECCC-CcEEEEEEcCCC
Confidence 779999999997 999999886 455566 3544 459999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCceeeccCCCC
Q 003308 393 NWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (832)
Q Consensus 393 ~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~~~ 424 (832)
++|++++.||+|+|||+........+.+|...
T Consensus 351 ~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~ 382 (410)
T 1vyh_C 351 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHF 382 (410)
T ss_dssp SCEEEEETTTEEEEECCTTSCCCEEEECCSSC
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEEcCCCCc
Confidence 99999999999999999888777888888543
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.2e-22 Score=218.57 Aligned_cols=222 Identities=14% Similarity=0.202 Sum_probs=170.7
Q ss_pred cEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccc
Q 003308 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (832)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~ 98 (832)
.++..+.++.++|||+.. +.....+..+...|..+.+.|+. .+|+.++.
T Consensus 94 ~l~s~s~D~~i~lWd~~~-~~~~~~~~~~~~~~~~~~~spdg--------------~~l~~g~~---------------- 142 (321)
T 3ow8_A 94 IAASSSLDAHIRLWDLEN-GKQIKSIDAGPVDAWTLAFSPDS--------------QYLATGTH---------------- 142 (321)
T ss_dssp EEEEEETTSEEEEEETTT-TEEEEEEECCTTCCCCEEECTTS--------------SEEEEECT----------------
T ss_pred EEEEEeCCCcEEEEECCC-CCEEEEEeCCCccEEEEEECCCC--------------CEEEEEcC----------------
Confidence 344445566799999986 44555555667777778887643 23443321
Q ss_pred cCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEecC
Q 003308 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTN 174 (832)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~ 174 (832)
+++|++||+++++.+.++.. ...|.+++|+ +++||+ +.++.|++||+.+++++.++..|
T Consensus 143 -----------------dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h 205 (321)
T 3ow8_A 143 -----------------VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205 (321)
T ss_dssp -----------------TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred -----------------CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc
Confidence 27899999999999988876 5689999997 467777 56889999999999988888765
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeec
Q 003308 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (832)
Q Consensus 175 ~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~l 254 (832)
..+ + +-|+|+. ++.
T Consensus 206 ~~~---------------v----~~l~~sp---------------------------d~~-------------------- 219 (321)
T 3ow8_A 206 AMP---------------I----RSLTFSP---------------------------DSQ-------------------- 219 (321)
T ss_dssp SSC---------------C----CEEEECT---------------------------TSC--------------------
T ss_pred CCc---------------e----eEEEEcC---------------------------CCC--------------------
Confidence 321 1 1233331 111
Q ss_pred cCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC
Q 003308 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI 334 (832)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~ 334 (832)
.++++..+|.|+|||+.+++++..+.+|..+|.+++|+|+|+
T Consensus 220 --------------------------------------~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 261 (321)
T 3ow8_A 220 --------------------------------------LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 261 (321)
T ss_dssp --------------------------------------EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred --------------------------------------EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCC
Confidence 123345688999999999999999999999999999999999
Q ss_pred EEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003308 335 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (832)
Q Consensus 335 lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl 409 (832)
+||+++.||+ |+|||+.++ ..+.++. ++. ..|.+++|+||+++|++++.||+|+|||+
T Consensus 262 ~l~s~s~D~~-v~iwd~~~~--------------~~~~~~~-~h~-~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 262 HFVSSSSDKS-VKVWDVGTR--------------TCVHTFF-DHQ-DQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEEETTSC-EEEEETTTT--------------EEEEEEC-CCS-SCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEEeCCCc-EEEEeCCCC--------------EEEEEEc-CCC-CcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999999998 899999876 5556663 443 45999999999999999999999999997
No 7
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.92 E-value=9.7e-23 Score=223.54 Aligned_cols=227 Identities=14% Similarity=0.141 Sum_probs=162.9
Q ss_pred cCCeEEEEeccCCCeeEEeee--------cCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCccc
Q 003308 26 RSGFQVWDVEEADNVHDLVSR--------YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (832)
Q Consensus 26 ~~G~qVWdv~~~~~~~ellS~--------~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~ 97 (832)
++.+++|+++...+..+.+.. ++..|++++|.|++. +||+++++
T Consensus 103 d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~--------------~la~as~~-------------- 154 (365)
T 4h5i_A 103 NKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT--------------VAAIASSK-------------- 154 (365)
T ss_dssp CCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS--------------CEEEEESC--------------
T ss_pred CCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC--------------EEEEEECC--------------
Confidence 345789998765444444332 244578888877542 45665532
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEEEecCC
Q 003308 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNP 175 (832)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~r~LAVa~~~~I~vwDl~t~~~~~tl~t~~ 175 (832)
.+++|+|||+++++++.++++...|++|+|+ +++|+++.++.+.+|+..+++.+.......
T Consensus 155 -----------------~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~ 217 (365)
T 4h5i_A 155 -----------------VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFD 217 (365)
T ss_dssp -----------------SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCC
T ss_pred -----------------CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCC
Confidence 2389999999999999999999999999997 578999889999999999988765442210
Q ss_pred CccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeecc
Q 003308 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 255 (832)
Q Consensus 176 ~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lG 255 (832)
. ...+ +-++|.. ++..+ +.+-
T Consensus 218 ~-------------~~~v----~~v~fsp---------------------------dg~~l-----------~~~s---- 238 (365)
T 4h5i_A 218 K-------------NWSL----SKINFIA---------------------------DDTVL-----------IAAS---- 238 (365)
T ss_dssp T-------------TEEE----EEEEEEE---------------------------TTEEE-----------EEEE----
T ss_pred C-------------CCCE----EEEEEcC---------------------------CCCEE-----------EEEe----
Confidence 0 0011 2234431 11111 1000
Q ss_pred CccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcE----EEEeccCCCCeEEEEEcC
Q 003308 256 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV----IAQFRAHKSPISALCFDP 331 (832)
Q Consensus 256 d~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~----l~~~~aH~~pIs~LaFSP 331 (832)
.+......+++||+..... ...+.+|..+|++|+|||
T Consensus 239 ---------------------------------------~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp 279 (365)
T 4h5i_A 239 ---------------------------------------LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM 279 (365)
T ss_dssp ---------------------------------------ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred ---------------------------------------cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence 0011122678888876542 456789999999999999
Q ss_pred CCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 332 dG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
||++||+|+.||+ |+|||+.++ ..+.++.+||.. .|++|+|||||++||++|.|+||+||++.+
T Consensus 280 dg~~lasgs~D~~-V~iwd~~~~--------------~~~~~~~~gH~~-~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 280 KGELAVLASNDNS-IALVKLKDL--------------SMSKIFKQAHSF-AITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TSCEEEEEETTSC-EEEEETTTT--------------EEEEEETTSSSS-CEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCceEEEcCCCE-EEEEECCCC--------------cEEEEecCcccC-CEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999998 999999886 566677677654 599999999999999999999999999954
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.92 E-value=2.1e-22 Score=213.97 Aligned_cols=237 Identities=14% Similarity=0.122 Sum_probs=176.9
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCccc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~ 97 (832)
+.++..+.++.++|||++. +.....+..|.++|+++++.|+. .+|+.++.
T Consensus 26 ~~l~s~~~dg~v~lWd~~~-~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~s~s~--------------- 75 (304)
T 2ynn_A 26 PWVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAGKFIARK--------------NWIIVGSD--------------- 75 (304)
T ss_dssp SEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGG--------------TEEEEEET---------------
T ss_pred CEEEEEcCCCcEEEEECCC-CceeEEeeccCCcEEEEEEeCCC--------------CEEEEECC---------------
Confidence 4455556666799999986 44555666789999999998742 24554442
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC--CEEEE-EeCCEEEEEECCCCce-EEEEe
Q 003308 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEI-EYAIL 172 (832)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~--r~LAV-a~~~~I~vwDl~t~~~-~~tl~ 172 (832)
+++|++||+.+++++.+++. ...|.+|+|++ ++|++ +.|++|++||+.+... ..++.
T Consensus 76 ------------------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 137 (304)
T 2ynn_A 76 ------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (304)
T ss_dssp ------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred ------------------CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence 27899999999999999975 67899999974 56666 5788999999988743 44554
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceee
Q 003308 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (832)
Q Consensus 173 t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~ 252 (832)
.|.. ++ ..++|.+ . ++.
T Consensus 138 ~h~~---------------~v----~~v~~~p-------------~-------------~~~------------------ 154 (304)
T 2ynn_A 138 GHEH---------------FV----MCVAFNP-------------K-------------DPS------------------ 154 (304)
T ss_dssp CCCS---------------CE----EEEEECT-------------T-------------CTT------------------
T ss_pred ccCC---------------cE----EEEEECC-------------C-------------CCC------------------
Confidence 4421 01 1123321 0 000
Q ss_pred eccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcC
Q 003308 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDP 331 (832)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~-aH~~pIs~LaFSP 331 (832)
.++++..||.|+|||+.+..+...+. .|...|.+++|+|
T Consensus 155 ----------------------------------------~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (304)
T 2ynn_A 155 ----------------------------------------TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194 (304)
T ss_dssp ----------------------------------------EEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECC
T ss_pred ----------------------------------------EEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEE
Confidence 12345678999999998877666665 5668899999987
Q ss_pred --CCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003308 332 --SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (832)
Q Consensus 332 --dG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl 409 (832)
++.+||||+.||+ |+|||+.++ ..+..+ .|+. ..|.+++|+|++++||+++.||+|+|||+
T Consensus 195 ~~~~~~l~s~s~D~~-i~iWd~~~~--------------~~~~~~-~~h~-~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 195 LPDKPYMITASDDLT-IKIWDYQTK--------------SCVATL-EGHM-SNVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp STTCCEEEEEETTSE-EEEEETTTT--------------EEEEEE-ECCS-SCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cCCCCEEEEEcCCCe-EEEEeCCCC--------------ccceee-CCCC-CCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 7889999999997 999999876 555666 3554 45999999999999999999999999999
Q ss_pred CCCCCceeeccCC
Q 003308 410 NPLGGSVNFQPTD 422 (832)
Q Consensus 410 ~~~g~~~~~~~H~ 422 (832)
.++.....+..|.
T Consensus 258 ~~~~~~~~~~~~~ 270 (304)
T 2ynn_A 258 STYKVEKTLNVGL 270 (304)
T ss_dssp TTCCEEEEECCSS
T ss_pred CCCceeeeccCCC
Confidence 9887777777663
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.91 E-value=4.4e-23 Score=225.36 Aligned_cols=234 Identities=12% Similarity=0.136 Sum_probs=162.0
Q ss_pred CcEEEEEecCCeEEEEeccCCCee--E-EeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCC
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVH--D-LVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~--e-llS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg 94 (832)
.++|+.+.++.++|||+....... . ....|.++|.++++.|+. .+|+.++.
T Consensus 106 ~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg--------------~~l~sgs~------------ 159 (357)
T 4g56_B 106 KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG--------------TQAVSGGK------------ 159 (357)
T ss_dssp TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS--------------SEEEEEET------------
T ss_pred CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC--------------CEEEEEeC------------
Confidence 667777877889999998643221 1 122588999999998753 24544432
Q ss_pred cccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCceEE
Q 003308 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEY 169 (832)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~---r~LAV-a~~~~I~vwDl~t~~~~~ 169 (832)
+++|++||+++++++..++. ...|.+|+|++ .++++ +.+++|++||+++++...
T Consensus 160 ---------------------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~ 218 (357)
T 4g56_B 160 ---------------------DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT 218 (357)
T ss_dssp ---------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC
T ss_pred ---------------------CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee
Confidence 26799999999999999975 67999999963 34554 678899999999887544
Q ss_pred EEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceec
Q 003308 170 AILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (832)
Q Consensus 170 tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~las 249 (832)
.+..... ..++ ..++|.+ . .+.
T Consensus 219 ~~~~~~~-------------~~~v----~~v~~sp-------------~-------------~~~--------------- 240 (357)
T 4g56_B 219 RIDFCAS-------------DTIP----TSVTWHP-------------E-------------KDD--------------- 240 (357)
T ss_dssp BCCCTTC-------------CSCE----EEEEECT-------------T-------------STT---------------
T ss_pred eeeeccc-------------cccc----cchhhhh-------------c-------------ccc---------------
Confidence 3322100 0000 1122321 0 000
Q ss_pred eeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003308 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (832)
Q Consensus 250 Gi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaF 329 (832)
.++++..+|.|+|||+.+++++..+.+|..+|.+|+|
T Consensus 241 -------------------------------------------~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~ 277 (357)
T 4g56_B 241 -------------------------------------------TFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY 277 (357)
T ss_dssp -------------------------------------------EEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred -------------------------------------------eEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence 1233456789999999999999999999999999999
Q ss_pred cCCC-CEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 003308 330 DPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLF 407 (832)
Q Consensus 330 SPdG-~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSp-Dg~~LAsgS~DgTVhIw 407 (832)
+|+| ++|||++.||+ |+|||+.++ +.+..+ ++. ..|++|+||| |+++||++|.||+|+||
T Consensus 278 sp~~~~~lasgs~D~~-i~iwd~~~~--------------~~~~~~--~H~-~~V~~vafsP~d~~~l~s~s~Dg~v~iW 339 (357)
T 4g56_B 278 SYHSSPFLASISEDCT-VAVLDADFS--------------EVFRDL--SHR-DFVTGVAWSPLDHSKFTTVGWDHKVLHH 339 (357)
T ss_dssp CSSSSCCEEEEETTSC-EEEECTTSC--------------EEEEEC--CCS-SCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred cCCCCCEEEEEeCCCE-EEEEECCCC--------------cEeEEC--CCC-CCEEEEEEeCCCCCEEEEEcCCCeEEEE
Confidence 9997 58999999998 899999876 333332 543 4699999998 89999999999999999
Q ss_pred ecCCCCCcee
Q 003308 408 AINPLGGSVN 417 (832)
Q Consensus 408 dl~~~g~~~~ 417 (832)
++...+....
T Consensus 340 ~~~~~~~~~~ 349 (357)
T 4g56_B 340 HLPSEGRTEN 349 (357)
T ss_dssp ECC-------
T ss_pred ECCCCCcccc
Confidence 9977655443
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.91 E-value=1.7e-22 Score=224.62 Aligned_cols=242 Identities=12% Similarity=0.207 Sum_probs=174.9
Q ss_pred cEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccc
Q 003308 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (832)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~ 98 (832)
.++..+.++.++|||+.. .++...+..|.+.|.++.+.|+. .+|+.++.
T Consensus 164 ~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~V~~v~~~p~~--------------~~l~s~s~---------------- 212 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQG-FECIRTMHGHDHNVSSVSIMPNG--------------DHIVSASR---------------- 212 (410)
T ss_dssp EEEEEETTSCCCEEETTS-SCEEECCCCCSSCEEEEEECSSS--------------SEEEEEET----------------
T ss_pred EEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCEEEEEEeCCC--------------CEEEEEeC----------------
Confidence 344445566699999976 45666677899999999998753 13443332
Q ss_pred cCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEecC
Q 003308 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTN 174 (832)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~ 174 (832)
+++|++||++++++++++.. ...|.++.++ +++|++ +.+++|++||+.+.++..++..|
T Consensus 213 -----------------D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h 275 (410)
T 1vyh_C 213 -----------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 275 (410)
T ss_dssp -----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred -----------------CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCC
Confidence 27899999999999999875 6689999997 467766 56889999999999998888766
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeec
Q 003308 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (832)
Q Consensus 175 ~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~l 254 (832)
... + ..++|+....... +. ...+...
T Consensus 276 ~~~---------------v----~~~~~~~~~~~~~---------~~--------~~~~~~~------------------ 301 (410)
T 1vyh_C 276 RHV---------------V----ECISWAPESSYSS---------IS--------EATGSET------------------ 301 (410)
T ss_dssp SSC---------------E----EEEEECCSCGGGG---------GG--------GCCSCC-------------------
T ss_pred Cce---------------E----EEEEEcCcccccc---------hh--------hhccccc------------------
Confidence 321 1 1234432100000 00 0000000
Q ss_pred cCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC
Q 003308 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI 334 (832)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~ 334 (832)
..... .| ..++++..||.|+|||+.+++++..+.+|..+|.+|+|+|+|+
T Consensus 302 ----------------------~~~~~-----~g---~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~ 351 (410)
T 1vyh_C 302 ----------------------KKSGK-----PG---PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK 351 (410)
T ss_dssp ---------------------------------C---CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred ----------------------cccCC-----CC---CEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCC
Confidence 00000 01 1345677899999999999999999999999999999999999
Q ss_pred EEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003308 335 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (832)
Q Consensus 335 lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl 409 (832)
+|+||+.||+ |+|||+.++ ..+..+ .++. ..|.+++|+|++++||++|.||+|+||++
T Consensus 352 ~l~s~s~D~~-i~vwd~~~~--------------~~~~~~-~~h~-~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 352 FILSCADDKT-LRVWDYKNK--------------RCMKTL-NAHE-HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEETTTE-EEEECCTTS--------------CCCEEE-ECCS-SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEEeCCCe-EEEEECCCC--------------ceEEEE-cCCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999997 999999775 233444 3443 45999999999999999999999999986
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.91 E-value=1.2e-21 Score=209.94 Aligned_cols=246 Identities=11% Similarity=0.155 Sum_probs=166.1
Q ss_pred cEEEEEecCCeEEEEeccCCC----eeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCC
Q 003308 19 RVLLLGYRSGFQVWDVEEADN----VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (832)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~----~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg 94 (832)
.++..+.++.+++||+..... ....+..|.++|..+.+.|+. .+|+.++.
T Consensus 32 ~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg--------------~~l~s~s~------------ 85 (319)
T 3frx_A 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG--------------AYALSASW------------ 85 (319)
T ss_dssp EEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS--------------SEEEEEET------------
T ss_pred EEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC--------------CEEEEEeC------------
Confidence 455555666799999975322 233456789999999998753 24544432
Q ss_pred cccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEcC--CEEEE-EeCCEEEEEECCCCceEEE
Q 003308 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEYA 170 (832)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S~--r~LAV-a~~~~I~vwDl~t~~~~~t 170 (832)
+++|+|||+++++++.++. +...|.++++++ ++|++ +.|++|++||+. .+++.+
T Consensus 86 ---------------------D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~ 143 (319)
T 3frx_A 86 ---------------------DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT 143 (319)
T ss_dssp ---------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEE
T ss_pred ---------------------CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEE
Confidence 2789999999999999987 477999999974 56665 678899999986 456666
Q ss_pred EecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003308 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (832)
Q Consensus 171 l~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasG 250 (832)
+..|... + .-+++.... .. ..+
T Consensus 144 ~~~h~~~---------------v----~~~~~~~~~-------------~~--------~~~------------------ 165 (319)
T 3frx_A 144 LLGHNDW---------------V----SQVRVVPNE-------------KA--------DDD------------------ 165 (319)
T ss_dssp ECCCSSC---------------E----EEEEECCC---------------------------------------------
T ss_pred EeccCCc---------------E----EEEEEccCC-------------CC--------CCC------------------
Confidence 6555210 1 012222100 00 000
Q ss_pred eeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEc
Q 003308 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD 330 (832)
Q Consensus 251 i~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFS 330 (832)
+ ..++++..+|.|++||+.+.+....+.+|..+|.+|+|+
T Consensus 166 -------------------------------------~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~s 205 (319)
T 3frx_A 166 -------------------------------------S---VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205 (319)
T ss_dssp -------------------------------------C---CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEEC
T ss_pred -------------------------------------c---cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEc
Confidence 0 013445678999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCEEEEEeCCCCCC-----CCCC----ccCCC--------CceeEEEEE---------ecc---C---
Q 003308 331 PSGILLVTASVQGHNINIFKIIPGIL-----GTSS----ACDAG--------TSYVHLYRL---------QRG---L--- 378 (832)
Q Consensus 331 PdG~lLATaS~dGt~I~Iwdi~t~~~-----~~~s----~~~~~--------~~~~~l~~l---------~rG---~--- 378 (832)
|+|++||+++.||+ |+|||+.++.. .... +..+. ....+++.+ +.. .
T Consensus 206 p~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 284 (319)
T 3frx_A 206 PDGTLIASAGKDGE-IMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284 (319)
T ss_dssp TTSSEEEEEETTCE-EEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGG
T ss_pred CCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccC
Confidence 99999999999997 99999987521 0000 00000 011222222 111 0
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 379 t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
....|.+++|||||++|++++.||+|+||++.+
T Consensus 285 ~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp GCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 122378899999999999999999999999864
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.91 E-value=1.9e-22 Score=220.45 Aligned_cols=240 Identities=11% Similarity=0.096 Sum_probs=170.6
Q ss_pred CCcEEEEEecCCeEEEEecc----------CCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCc
Q 003308 17 TRRVLLLGYRSGFQVWDVEE----------ADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRS 86 (832)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~----------~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~ 86 (832)
..++|+.|.+..+++||... ........-.++.+|.++++.|+. .|+.++.
T Consensus 41 dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~---------------~l~~~s~---- 101 (344)
T 4gqb_B 41 DGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER---------------GILVASD---- 101 (344)
T ss_dssp TSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT---------------EEEEEET----
T ss_pred CCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC---------------eEEEEEC----
Confidence 35778888877888887421 001111122357889999998742 2433332
Q ss_pred cCccccCCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEe-----CCCCEEEEEEc--CCEEEE-EeCCEEE
Q 003308 87 CGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-----FRSPIYSVRCS--SRVVAI-CQAAQVH 158 (832)
Q Consensus 87 g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-----f~s~V~sV~~S--~r~LAV-a~~~~I~ 158 (832)
+++|+|||+.+++++..++ +...|.+|+|+ +++|++ +.+++|+
T Consensus 102 -----------------------------dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~ 152 (344)
T 4gqb_B 102 -----------------------------SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152 (344)
T ss_dssp -----------------------------TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred -----------------------------CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 2789999999998776654 46789999997 467776 5688999
Q ss_pred EEECCCCceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceee
Q 003308 159 CFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAH 238 (832)
Q Consensus 159 vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~ 238 (832)
+||+.+++++.++.+|... + ..+++.. ++..
T Consensus 153 iwd~~~~~~~~~~~~h~~~---------------V----~~~~~~~---------------------------~~~~--- 183 (344)
T 4gqb_B 153 VWDLAQQVVLSSYRAHAAQ---------------V----TCVAASP---------------------------HKDS--- 183 (344)
T ss_dssp EEETTTTEEEEEECCCSSC---------------E----EEEEECS---------------------------SCTT---
T ss_pred EEECCCCcEEEEEcCcCCc---------------e----EEEEecC---------------------------CCCC---
Confidence 9999999999998776321 1 1123321 0000
Q ss_pred eecccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEec
Q 003308 239 YAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR 318 (832)
Q Consensus 239 ~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~ 318 (832)
.++++..||+|+|||+.+++++..+.
T Consensus 184 ------------------------------------------------------~l~s~s~D~~v~iwd~~~~~~~~~~~ 209 (344)
T 4gqb_B 184 ------------------------------------------------------VFLSCSEDNRILLWDTRCPKPASQIG 209 (344)
T ss_dssp ------------------------------------------------------EEEEEETTSCEEEEETTSSSCEEECC
T ss_pred ------------------------------------------------------ceeeeccccccccccccccceeeeee
Confidence 12345678999999999999988886
Q ss_pred --cCCCCeEEEEEcCC-CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCC-CE
Q 003308 319 --AHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS-NW 394 (832)
Q Consensus 319 --aH~~pIs~LaFSPd-G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg-~~ 394 (832)
.|...+.+++|+|+ +.+||+|+.||+ |+|||+.++ ..+.++ +++. ..|.+|+||||+ ++
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~--------------~~~~~~-~~h~-~~v~~v~fsp~g~~~ 272 (344)
T 4gqb_B 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKST--------------SCVLSS-AVHS-QCVTGLVFSPHSVPF 272 (344)
T ss_dssp ----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC----------------CCEEE-ECCS-SCEEEEEECSSSSCC
T ss_pred cceeeccceeeeecCCCCcceEEeccCCc-EEEEECCCC--------------cEEEEE-cCCC-CCEEEEEEccCCCeE
Confidence 45668999999994 678999999997 999999876 334455 3544 359999999998 58
Q ss_pred EEEEeCCCcEEEEecCCCCCceeeccCCCCc
Q 003308 395 IMISSSRGTSHLFAINPLGGSVNFQPTDANF 425 (832)
Q Consensus 395 LAsgS~DgTVhIwdl~~~g~~~~~~~H~~~~ 425 (832)
||++|.|++|+|||+... ....+.+|.+.+
T Consensus 273 lasgs~D~~i~vwd~~~~-~~~~~~~H~~~V 302 (344)
T 4gqb_B 273 LASLSEDCSLAVLDSSLS-ELFRSQAHRDFV 302 (344)
T ss_dssp EEEEETTSCEEEECTTCC-EEEEECCCSSCE
T ss_pred EEEEeCCCeEEEEECCCC-cEEEEcCCCCCE
Confidence 999999999999999764 556778886543
No 13
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.91 E-value=6e-22 Score=210.46 Aligned_cols=219 Identities=11% Similarity=0.197 Sum_probs=168.7
Q ss_pred CeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCCCCCE
Q 003308 39 NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTV 118 (832)
Q Consensus 39 ~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~t 118 (832)
+....+..|.+.|+++++.|+. ++|+.++. +++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~--------------~~l~s~~~---------------------------------dg~ 36 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTE--------------PWVLTTLY---------------------------------SGR 36 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSS--------------SEEEEEET---------------------------------TSE
T ss_pred eeEEeecCCCCceEEEEECCCC--------------CEEEEEcC---------------------------------CCc
Confidence 3566788899999999998853 35654442 278
Q ss_pred EEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccceee
Q 003308 119 VHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 194 (832)
Q Consensus 119 VrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~A 194 (832)
|+|||+.++++++++.. ..+|.+++|+ +++|++ +.+++|++||+.+++++.++..|... +
T Consensus 37 v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~---------------v- 100 (304)
T 2ynn_A 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY---------------I- 100 (304)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC---------------E-
T ss_pred EEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc---------------E-
Confidence 99999999999999986 5689999996 467766 56889999999999999998877421 1
Q ss_pred eccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCCCc
Q 003308 195 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ 274 (832)
Q Consensus 195 lg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~ 274 (832)
+.|++.+ ++.
T Consensus 101 ---~~~~~~~---------------------------~~~---------------------------------------- 110 (304)
T 2ynn_A 101 ---RSIAVHP---------------------------TKP---------------------------------------- 110 (304)
T ss_dssp ---EEEEECS---------------------------SSS----------------------------------------
T ss_pred ---EEEEEcC---------------------------CCC----------------------------------------
Confidence 1233331 011
Q ss_pred CccccccCCCCCCCcccccccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcC-CCCEEEEEEcCCCEEEEEeCC
Q 003308 275 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKII 352 (832)
Q Consensus 275 ~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~-~~l~~~~aH~~pIs~LaFSP-dG~lLATaS~dGt~I~Iwdi~ 352 (832)
.++++..||+|+|||+.++ .+...+.+|..+|.+++|+| ++.+||||+.||+ |+|||+.
T Consensus 111 ------------------~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~-v~iwd~~ 171 (304)
T 2ynn_A 111 ------------------YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWSLG 171 (304)
T ss_dssp ------------------EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE-EEEEETT
T ss_pred ------------------EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe-EEEEECC
Confidence 1233567899999999887 56678899999999999999 6899999999997 9999997
Q ss_pred CCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEcc--CCCEEEEEeCCCcEEEEecCCCCCceeeccCCCC
Q 003308 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (832)
Q Consensus 353 t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSp--Dg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~~~ 424 (832)
.. ...+.+..++ ...|..++|+| |+++|++++.|++|+|||+........+.+|...
T Consensus 172 ~~--------------~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~ 230 (304)
T 2ynn_A 172 QS--------------TPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230 (304)
T ss_dssp CS--------------SCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CC--------------CccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCC
Confidence 65 1223343333 23588899986 8899999999999999999988777888888543
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.91 E-value=6.7e-22 Score=231.17 Aligned_cols=236 Identities=11% Similarity=0.140 Sum_probs=174.0
Q ss_pred CCCcEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCc
Q 003308 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (832)
Q Consensus 16 ~~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~ 95 (832)
+..+.|+.+..+.++|||+.. +.....+..|.+.|.++++.|+. .+||..+.
T Consensus 28 pdg~~l~~~~~~~v~l~~~~~-~~~~~~~~~h~~~v~~~~~spdg--------------~~lasg~~------------- 79 (611)
T 1nr0_A 28 PAGDKIQYCNGTSVYTVPVGS-LTDTEIYTEHSHQTTVAKTSPSG--------------YYCASGDV------------- 79 (611)
T ss_dssp TTSSEEEEEETTEEEEEETTC-SSCCEEECCCSSCEEEEEECTTS--------------SEEEEEET-------------
T ss_pred CCCCEEEeCCCCEEEEecCCC-cccCeEecCCCCceEEEEECCCC--------------cEEEEEeC-------------
Confidence 346778888888899999986 45667778899999999999853 24654442
Q ss_pred ccccCCCCCCCCCCCCCCCCCCEEEEEECCCCc--EEEEEe-CCCCEEEEEEc--CCEEEEEeC-----CEEEEEECCCC
Q 003308 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS--SRVVAICQA-----AQVHCFDAATL 165 (832)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~--~V~tL~-f~s~V~sV~~S--~r~LAVa~~-----~~I~vwDl~t~ 165 (832)
+++|+|||+.+++ +..++. +..+|.+|+|+ ++.||++.+ .+|++||. +
T Consensus 80 --------------------d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~ 137 (611)
T 1nr0_A 80 --------------------HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--G 137 (611)
T ss_dssp --------------------TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--C
T ss_pred --------------------CCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--C
Confidence 2789999997654 455565 46799999997 467776543 26888884 4
Q ss_pred ceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003308 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (832)
Q Consensus 166 ~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk 245 (832)
+++.++.+|.. ++ ..++|.+ ++..
T Consensus 138 ~~~~~l~gh~~---------------~v----~~v~f~p---------------------------~~~~---------- 161 (611)
T 1nr0_A 138 TSNGNLTGQAR---------------AM----NSVDFKP---------------------------SRPF---------- 161 (611)
T ss_dssp CBCBCCCCCSS---------------CE----EEEEECS---------------------------SSSC----------
T ss_pred CCcceecCCCC---------------Cc----eEEEECC---------------------------CCCe----------
Confidence 44444433321 11 1223321 0000
Q ss_pred ceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeE
Q 003308 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS 325 (832)
Q Consensus 246 ~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs 325 (832)
.++++..|++|+|||..+++++.+|.+|...|.
T Consensus 162 -----------------------------------------------~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~ 194 (611)
T 1nr0_A 162 -----------------------------------------------RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 194 (611)
T ss_dssp -----------------------------------------------EEEEEETTSCEEEEETTTBEEEEEECCCSSCEE
T ss_pred -----------------------------------------------EEEEEeCCCeEEEEECCCCeEeeeeccccCceE
Confidence 123456789999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec------cCccccEEEEEEccCCCEEEEEe
Q 003308 326 ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR------GLTNAVIQDISFSDDSNWIMISS 399 (832)
Q Consensus 326 ~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~r------G~t~a~I~~IaFSpDg~~LAsgS 399 (832)
+++|+|||++||||+.||+ |+|||+.++ ..+..+.. ++. ..|.+++|+|||++||+++
T Consensus 195 ~v~fspdg~~las~s~D~~-i~lwd~~~g--------------~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 195 SVRYNPDGSLFASTGGDGT-IVLYNGVDG--------------TKTGVFEDDSLKNVAHS-GSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp EEEECTTSSEEEEEETTSC-EEEEETTTC--------------CEEEECBCTTSSSCSSS-SCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCCEEEEEECCCc-EEEEECCCC--------------cEeeeeccccccccccC-CCEEEEEECCCCCEEEEEe
Confidence 9999999999999999998 899999876 34444432 443 4699999999999999999
Q ss_pred CCCcEEEEecCCCCCceeecc
Q 003308 400 SRGTSHLFAINPLGGSVNFQP 420 (832)
Q Consensus 400 ~DgTVhIwdl~~~g~~~~~~~ 420 (832)
.|++|+|||+.+......+..
T Consensus 259 ~D~~v~lWd~~~~~~~~~~~~ 279 (611)
T 1nr0_A 259 ADKTIKIWNVATLKVEKTIPV 279 (611)
T ss_dssp TTSEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEeCCCCceeeeecC
Confidence 999999999987655555543
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.90 E-value=1.4e-21 Score=212.85 Aligned_cols=243 Identities=12% Similarity=0.116 Sum_probs=177.0
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCccc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~ 97 (832)
+.++..+.++.++|||+.. ++....+..+...|..+++.|.. .+||.++
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~~~~v~~~~~sp~g--------------~~lasg~---------------- 125 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFT-TNKEHAVTMPCTWVMACAYAPSG--------------CAIACGG---------------- 125 (354)
T ss_dssp SEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCEEEECTTS--------------SEEEEES----------------
T ss_pred CEEEEEeCCCeEEEEECCC-CCcceEEecCCCCEEEEEECCCC--------------CEEEEee----------------
Confidence 4455555566699999876 45556666788889999998753 1344332
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEEECCCC------cEEEEEe-CCCCEEEEEEcC--CEEE-EEeCCEEEEEECCCCce
Q 003308 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQ------SYVHMLK-FRSPIYSVRCSS--RVVA-ICQAAQVHCFDAATLEI 167 (832)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg------~~V~tL~-f~s~V~sV~~S~--r~LA-Va~~~~I~vwDl~t~~~ 167 (832)
.++++++|++... .....+. +...|.++.|++ +.|+ .+.+++|++||+.++++
T Consensus 126 -----------------~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~ 188 (354)
T 2pbi_B 126 -----------------LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL 188 (354)
T ss_dssp -----------------TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred -----------------CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE
Confidence 1278999998654 2334443 567899999973 4454 47789999999999999
Q ss_pred EEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccce
Q 003308 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (832)
Q Consensus 168 ~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~l 247 (832)
+.++..|... + ..++++.++ +|.
T Consensus 189 ~~~~~~h~~~---------------v----~~~~~~~~~-------------------------~g~------------- 211 (354)
T 2pbi_B 189 LQSFHGHGAD---------------V----LCLDLAPSE-------------------------TGN------------- 211 (354)
T ss_dssp EEEEECCSSC---------------E----EEEEECCCS-------------------------SCC-------------
T ss_pred EEEEcCCCCC---------------e----EEEEEEeCC-------------------------CCC-------------
Confidence 8888776321 1 012222100 010
Q ss_pred eceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEE
Q 003308 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISAL 327 (832)
Q Consensus 248 asGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~L 327 (832)
.++++..||.|++||+.+++++..+.+|..+|.++
T Consensus 212 ---------------------------------------------~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v 246 (354)
T 2pbi_B 212 ---------------------------------------------TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV 246 (354)
T ss_dssp ---------------------------------------------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred ---------------------------------------------EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEE
Confidence 12345678999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 003308 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (832)
Q Consensus 328 aFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIw 407 (832)
+|+|+|.+||||+.||+ |+|||+... ..+..+........+.+++|+||+++|++++.|++|+||
T Consensus 247 ~~~p~~~~l~s~s~D~~-v~lwd~~~~--------------~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vw 311 (354)
T 2pbi_B 247 RYYPSGDAFASGSDDAT-CRLYDLRAD--------------REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311 (354)
T ss_dssp EECTTSSEEEEEETTSC-EEEEETTTT--------------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEeCCCCEEEEEeCCCe-EEEEECCCC--------------cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEE
Confidence 99999999999999998 899999875 333333222222348999999999999999999999999
Q ss_pred ecCCCCCceeeccCCCCc
Q 003308 408 AINPLGGSVNFQPTDANF 425 (832)
Q Consensus 408 dl~~~g~~~~~~~H~~~~ 425 (832)
|+.+......+.+|.+.+
T Consensus 312 d~~~~~~~~~l~~h~~~v 329 (354)
T 2pbi_B 312 DVLKGSRVSILFGHENRV 329 (354)
T ss_dssp ETTTCSEEEEECCCSSCE
T ss_pred ECCCCceEEEEECCCCcE
Confidence 998876667778885543
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.90 E-value=1.8e-21 Score=227.47 Aligned_cols=255 Identities=15% Similarity=0.217 Sum_probs=174.7
Q ss_pred CCcEEEEEe-cCCeEEEEeccCC-CeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCC
Q 003308 17 TRRVLLLGY-RSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (832)
Q Consensus 17 ~~~vLl~Gy-~~G~qVWdv~~~~-~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg 94 (832)
..++|+.|. ++.++|||+.... .....+..|.++|+.+++.|+. .+||.++.+. +
T Consensus 70 dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg--------------~~l~~~~~~~--------~- 126 (611)
T 1nr0_A 70 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES--------------KRIAAVGEGR--------E- 126 (611)
T ss_dssp TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS--------------CEEEEEECCS--------S-
T ss_pred CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCC--------------CEEEEEECCC--------C-
Confidence 356666665 4559999996422 2344566789999999999853 2466565421 0
Q ss_pred cccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCceEE
Q 003308 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEY 169 (832)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~---r~LAV-a~~~~I~vwDl~t~~~~~ 169 (832)
..++|++|| +++++.++.. ...|.+|+|++ .+|++ +.|++|++||..+++++.
T Consensus 127 --------------------~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~ 184 (611)
T 1nr0_A 127 --------------------RFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS 184 (611)
T ss_dssp --------------------CSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE
T ss_pred --------------------ceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee
Confidence 115788888 4666666654 56899999985 24665 678899999999998888
Q ss_pred EEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceec
Q 003308 170 AILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (832)
Q Consensus 170 tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~las 249 (832)
++..|... + .-++|++ +|.
T Consensus 185 ~l~~H~~~---------------V----~~v~fsp---------------------------dg~--------------- 203 (611)
T 1nr0_A 185 TFGEHTKF---------------V----HSVRYNP---------------------------DGS--------------- 203 (611)
T ss_dssp EECCCSSC---------------E----EEEEECT---------------------------TSS---------------
T ss_pred eeccccCc---------------e----EEEEECC---------------------------CCC---------------
Confidence 88776321 1 1233431 111
Q ss_pred eeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEec-------cCCC
Q 003308 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-------AHKS 322 (832)
Q Consensus 250 Gi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~-------aH~~ 322 (832)
.++++..||+|+|||+.+++++..|. +|..
T Consensus 204 -------------------------------------------~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 204 -------------------------------------------LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 240 (611)
T ss_dssp -------------------------------------------EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred -------------------------------------------EEEEEECCCcEEEEECCCCcEeeeeccccccccccCC
Confidence 12334578899999999999999984 7999
Q ss_pred CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCC-----CCCc----------------cCCCCc--------eeEEEE
Q 003308 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILG-----TSSA----------------CDAGTS--------YVHLYR 373 (832)
Q Consensus 323 pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~-----~~s~----------------~~~~~~--------~~~l~~ 373 (832)
+|.+|+|+|||++|||++.||+ |+|||+.++..- .... ....+. ...+ .
T Consensus 241 ~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~-~ 318 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSID-Q 318 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEE-E
T ss_pred CEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcc-e
Confidence 9999999999999999999987 999999875210 0000 000000 0111 1
Q ss_pred EeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee-ccCCC
Q 003308 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDA 423 (832)
Q Consensus 374 l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~-~~H~~ 423 (832)
...|+. ..|.+++|||||++|++++.|++|+|||+.+......+ ..|..
T Consensus 319 ~~~gh~-~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~ 368 (611)
T 1nr0_A 319 VRYGHN-KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT 368 (611)
T ss_dssp EECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred EEcCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcc
Confidence 224554 45999999999999999999999999999875443333 34543
No 17
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.90 E-value=1.8e-21 Score=210.10 Aligned_cols=222 Identities=13% Similarity=0.161 Sum_probs=165.7
Q ss_pred CcEEEEEecCCeEEEEeccCC---CeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCC
Q 003308 18 RRVLLLGYRSGFQVWDVEEAD---NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~---~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg 94 (832)
+.++..+.++.++|||+.... .....+..|.+.|.++.+.+.. .++.++.
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~l~s~s~------------ 162 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---------------QIVTSSG------------ 162 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT---------------EEEEEET------------
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC---------------cEEEEEC------------
Confidence 344455566669999997642 2334455788999999987631 2333321
Q ss_pred cccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC--CEEEE-EeCCEEEEEECCCCceEEE
Q 003308 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEYA 170 (832)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~--r~LAV-a~~~~I~vwDl~t~~~~~t 170 (832)
+++|++||+++++++.++.. ...|.++++++ ++|++ +.+++|++||+.+++++.+
T Consensus 163 ---------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~ 221 (340)
T 1got_B 163 ---------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221 (340)
T ss_dssp ---------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred ---------------------CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE
Confidence 26799999999999999874 67899999974 56666 5689999999999998888
Q ss_pred EecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003308 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (832)
Q Consensus 171 l~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasG 250 (832)
+..|... + .-|++.+ ++.
T Consensus 222 ~~~h~~~---------------v----~~v~~~p---------------------------~~~---------------- 239 (340)
T 1got_B 222 FTGHESD---------------I----NAICFFP---------------------------NGN---------------- 239 (340)
T ss_dssp ECCCSSC---------------E----EEEEECT---------------------------TSS----------------
T ss_pred EcCCcCC---------------E----EEEEEcC---------------------------CCC----------------
Confidence 8665320 1 1123321 011
Q ss_pred eeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEecc--CCCCeEEEE
Q 003308 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA--HKSPISALC 328 (832)
Q Consensus 251 i~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~a--H~~pIs~La 328 (832)
.++++..||.|+|||+.+++.+..+.. +...|.+++
T Consensus 240 ------------------------------------------~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 240 ------------------------------------------AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ------------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred ------------------------------------------EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 123345788999999999988887763 345899999
Q ss_pred EcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003308 329 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (832)
Q Consensus 329 FSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwd 408 (832)
|+|+|++|++|+.||+ |+|||+.++ ..+..+ .|+. ..|.+++|+|||++||++|.|++|+|||
T Consensus 278 ~s~~g~~l~~g~~d~~-i~vwd~~~~--------------~~~~~~-~~h~-~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 278 FSKSGRLLLAGYDDFN-CNVWDALKA--------------DRAGVL-AGHD-NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECTTSSEEEEEETTSE-EEEEETTTC--------------CEEEEE-ECCS-SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCCEEEEECCCCe-EEEEEcccC--------------cEeeEe-ecCC-CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999997 999999875 344455 4554 4699999999999999999999999996
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.90 E-value=2.7e-21 Score=213.10 Aligned_cols=250 Identities=14% Similarity=0.167 Sum_probs=172.0
Q ss_pred CCcEEEEEecCCeEEEEeccCCCeeEEeeecC------------------CCEEEEEEecCCCcccccCCcccccCCEEE
Q 003308 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYD------------------GPVSFMQMLPRPITSKRSRDKFAEVRPLLV 78 (832)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~d------------------G~Vr~v~ilp~p~~~~~~~d~f~~~rPLLa 78 (832)
..+.|+.|.++.++||++.. +.....+..+. ..|+++++.|+. .+||
T Consensus 75 dg~~la~g~~~~v~i~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg--------------~~l~ 139 (393)
T 1erj_A 75 DGEYLATGCNKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG--------------KFLA 139 (393)
T ss_dssp TSSEEEEECBSCEEEEETTT-CCEEEEECC-----------------CCCCBEEEEEECTTS--------------SEEE
T ss_pred CCCEEEEEcCCcEEEEEecC-CCEEEEecCccccccccccccccccCCCceeEEEEEECCCC--------------CEEE
Confidence 46788889889999999986 44443443222 236666666532 2344
Q ss_pred EEeCCCCccCccccCCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeC
Q 003308 79 FCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQA 154 (832)
Q Consensus 79 vv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~r~LAV-a~~ 154 (832)
.++. +++|++||+.+++++..+. +...|++++|+ ++.|++ +.+
T Consensus 140 s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d 186 (393)
T 1erj_A 140 TGAE---------------------------------DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186 (393)
T ss_dssp EEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEcC---------------------------------CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCC
Confidence 3331 2789999999999999987 46789999997 456665 678
Q ss_pred CEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCc
Q 003308 155 AQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS 234 (832)
Q Consensus 155 ~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~ 234 (832)
++|++||+.++++..++..... + ..+++.. . ++.
T Consensus 187 ~~v~iwd~~~~~~~~~~~~~~~----------------v----~~~~~~~-------------~-------------~~~ 220 (393)
T 1erj_A 187 RTVRIWDLRTGQCSLTLSIEDG----------------V----TTVAVSP-------------G-------------DGK 220 (393)
T ss_dssp SEEEEEETTTTEEEEEEECSSC----------------E----EEEEECS-------------T-------------TCC
T ss_pred CcEEEEECCCCeeEEEEEcCCC----------------c----EEEEEEC-------------C-------------CCC
Confidence 9999999999988776643210 0 1122220 0 111
Q ss_pred ceeeeecccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEE
Q 003308 235 RVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI 314 (832)
Q Consensus 235 ~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l 314 (832)
.++++..+|.|+|||+.+++++
T Consensus 221 ----------------------------------------------------------~l~~~s~d~~v~iwd~~~~~~~ 242 (393)
T 1erj_A 221 ----------------------------------------------------------YIAAGSLDRAVRVWDSETGFLV 242 (393)
T ss_dssp ----------------------------------------------------------EEEEEETTSCEEEEETTTCCEE
T ss_pred ----------------------------------------------------------EEEEEcCCCcEEEEECCCCcEE
Confidence 1233456889999999999888
Q ss_pred EEe-------ccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEE
Q 003308 315 AQF-------RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDIS 387 (832)
Q Consensus 315 ~~~-------~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~Ia 387 (832)
..+ .+|..+|.+|+|+|+|++||+++.||+ |+|||+........... .........+ .|+. ..|.+++
T Consensus 243 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~~~~~~~~--~~~~~~~~~~-~~h~-~~v~~~~ 317 (393)
T 1erj_A 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKSDSKT--PNSGTCEVTY-IGHK-DFVLSVA 317 (393)
T ss_dssp EEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC-----------------CEEEEE-ECCS-SCEEEEE
T ss_pred EeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCCCcccccC--CCCCcceEEE-eccc-CcEEEEE
Confidence 877 589999999999999999999999997 99999976411000000 0001223333 3543 3599999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCC
Q 003308 388 FSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (832)
Q Consensus 388 FSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~~ 423 (832)
|+|++++|++++.|++|+|||+........+.+|..
T Consensus 318 ~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~ 353 (393)
T 1erj_A 318 TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 353 (393)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence 999999999999999999999988776677888844
No 19
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.90 E-value=7.5e-21 Score=210.85 Aligned_cols=273 Identities=14% Similarity=0.213 Sum_probs=183.3
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEee--ecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS--~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~ 95 (832)
..+|++|.++.++|||+.+ +++..++. .|.+.|.++++.|+. .+||+++.
T Consensus 116 ~n~lAvgld~tV~lWd~~t-g~~~~~~~~~~~~~~V~sv~fspdg--------------~~lasgs~------------- 167 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEG--------------NYLAVGTS------------- 167 (420)
T ss_dssp TSEEEEEETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTS--------------SEEEEEET-------------
T ss_pred CCEEEEEeCCEEEEEECCC-CCEEEEEEecCCCCcEEEEEECCCC--------------CEEEEEEC-------------
Confidence 5689999999999999987 67777776 466789999998753 24655442
Q ss_pred ccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEE-EeCCEEEEEECCCCc-eEEEEe
Q 003308 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLE-IEYAIL 172 (832)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~r~LAV-a~~~~I~vwDl~t~~-~~~tl~ 172 (832)
+++|+|||+.++++++++.. ...|.++.+++++|++ +.++.|++||..+.. .+.++.
T Consensus 168 --------------------Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~ 227 (420)
T 4gga_A 168 --------------------SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 227 (420)
T ss_dssp --------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred --------------------CCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEec
Confidence 26799999999999999975 6789999999998887 568899999998754 456666
Q ss_pred cCCCccCCCCCCCCCcccceeeecc--ceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003308 173 TNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (832)
Q Consensus 173 t~~~~~~~p~~~~~~~~~~p~Alg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasG 250 (832)
.|.... ..+...+ ++|+..... ..+.-+.....+....-
T Consensus 228 ~h~~~~------------~~~~~~~~g~~l~s~~~D---------------------------~~v~i~~~~~~~~~~~~ 268 (420)
T 4gga_A 228 GHSQEV------------CGLRWAPDGRHLASGGND---------------------------NLVNVWPSAPGEGGWVP 268 (420)
T ss_dssp CCSSCE------------EEEEECTTSSEEEEEETT---------------------------SCEEEEESSCCSSCSCC
T ss_pred ccccce------------eeeeecCCCCeeeeeecc---------------------------ccceEEeecccccccee
Confidence 654211 1122222 444443211 00100000000000000
Q ss_pred eeeccCccccccccccccccCCCcCcccc--ccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEE
Q 003308 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQS--AIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALC 328 (832)
Q Consensus 251 i~~lGd~g~~~ls~y~~~~~p~~~~si~s--a~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~La 328 (832)
+..... ....+.. .++... ..+ ...++..||+|+|||+.+++++..+..| ..|.++.
T Consensus 269 ~~~~~~----------------~~~~V~~~~~~p~~~--~~l--a~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~ 327 (420)
T 4gga_A 269 LQTFTQ----------------HQGAVKAVAWCPWQS--NVL--ATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 327 (420)
T ss_dssp SEEECC----------------CSSCEEEEEECTTCT--TEE--EEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred eeeecc----------------cCCceeeeeeCCCcc--cEE--EEEeecCCCEEEEEeCCccccceeeccc-cceeeee
Confidence 000000 0000000 011100 000 0123567899999999999999998876 4688999
Q ss_pred EcCCCCEEEEEE--cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEE
Q 003308 329 FDPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 406 (832)
Q Consensus 329 FSPdG~lLATaS--~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhI 406 (832)
|+|++..|++++ .||+ |+|||+.++ ..+.+| +||. ..|.+|+|||||++||++|.|+||+|
T Consensus 328 ~~~~~~~lv~~sg~~d~~-I~iwd~~~~--------------~~v~~l-~gH~-~~V~~l~~spdg~~l~S~s~D~tvri 390 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQ-LVIWKYPTM--------------AKVAEL-KGHT-SRVLSLTMSPDGATVASAAADETLRL 390 (420)
T ss_dssp EETTTTEEEEEECTTTCC-EEEEETTTC--------------CEEEEE-CCCS-SCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred ecCCCCeEEEEEecCCCE-EEEEECCCC--------------cEEEEE-cCCC-CCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 999999998876 6787 899999876 566677 5765 46999999999999999999999999
Q ss_pred EecCCCCCc
Q 003308 407 FAINPLGGS 415 (832)
Q Consensus 407 wdl~~~g~~ 415 (832)
||+......
T Consensus 391 Wdv~~~~~~ 399 (420)
T 4gga_A 391 WRCFELDPA 399 (420)
T ss_dssp ECCSCSSCC
T ss_pred EECCCCCcc
Confidence 999765433
No 20
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.89 E-value=3.5e-21 Score=203.83 Aligned_cols=247 Identities=14% Similarity=0.198 Sum_probs=165.7
Q ss_pred CcEEEEEecCCeEEEEeccC-CCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLGYRSGFQVWDVEEA-DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~-~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
+.++..+.++.++|||++.. ......+..|.++|.++++.|.. ...+||.++.
T Consensus 22 ~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~------------~g~~l~s~s~-------------- 75 (297)
T 2pm7_B 22 KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK------------FGTILASCSY-------------- 75 (297)
T ss_dssp SEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG------------GCSEEEEEET--------------
T ss_pred CEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC------------cCCEEEEEcC--------------
Confidence 45555666777999999752 24555667899999999997521 0124554442
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCc--EEEEEe-CCCCEEEEEEcC----CEEEE-EeCCEEEEEECCCCce-
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLEI- 167 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~--~V~tL~-f~s~V~sV~~S~----r~LAV-a~~~~I~vwDl~t~~~- 167 (832)
+++|+|||+++++ .+.++. +...|.+|+|++ ++|++ +.+++|++||+.+...
T Consensus 76 -------------------D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~ 136 (297)
T 2pm7_B 76 -------------------DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT 136 (297)
T ss_dssp -------------------TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred -------------------CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce
Confidence 2789999999884 555665 467899999974 46666 6788999999987632
Q ss_pred -EEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003308 168 -EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (832)
Q Consensus 168 -~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~ 246 (832)
...+..|.. .+ .-+++.... ... .+.
T Consensus 137 ~~~~~~~h~~------------~v-------~~~~~~p~~-------------~~~---------~~~------------ 163 (297)
T 2pm7_B 137 SPIIIDAHAI------------GV-------NSASWAPAT-------------IEE---------DGE------------ 163 (297)
T ss_dssp CCEEEECCSS------------CE-------EEEEECCCC----------------------------------------
T ss_pred eeeeeecccC------------cc-------ceEeecCCc-------------ccc---------ccc------------
Confidence 334444421 01 122333110 000 000
Q ss_pred eeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc----EEEEeccCCC
Q 003308 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHKS 322 (832)
Q Consensus 247 lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~----~l~~~~aH~~ 322 (832)
+. ... + ...++++..||+|+|||+.+++ ++..|++|..
T Consensus 164 --------~~-----------------------~~~----~---~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~ 205 (297)
T 2pm7_B 164 --------HN-----------------------GTK----E---SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (297)
T ss_dssp --------------------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred --------CC-----------------------CCC----C---cceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC
Confidence 00 000 0 0124566789999999998765 6778999999
Q ss_pred CeEEEEEcCCC---CEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe-ccCccccEEEEEEccCCCEEEEE
Q 003308 323 PISALCFDPSG---ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGLTNAVIQDISFSDDSNWIMIS 398 (832)
Q Consensus 323 pIs~LaFSPdG---~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~-rG~t~a~I~~IaFSpDg~~LAsg 398 (832)
+|.+|+|+|++ .+|||++.||+ |+|||+.... . . .....+. .++ ...|++++|+|||++||++
T Consensus 206 ~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~~~~-~---------~-~~~~~~~~~~~-~~~v~~~~~s~~g~~las~ 272 (297)
T 2pm7_B 206 WVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDNEQ-G---------P-WKKTLLKEEKF-PDVLWRASWSLSGNVLALS 272 (297)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTT-S---------C-CEEEESSSSCC-SSCEEEEEECSSSCCEEEE
T ss_pred ceEEEEECCCCCCceEEEEEECCCc-EEEEEeCCCC-C---------c-cceeeeecccC-CCcEEEEEECCCCCEEEEE
Confidence 99999999995 89999999998 8999987640 0 0 1111221 233 3459999999999999999
Q ss_pred eCCCcEEEEecCCCC
Q 003308 399 SSRGTSHLFAINPLG 413 (832)
Q Consensus 399 S~DgTVhIwdl~~~g 413 (832)
+.|++|+||+....+
T Consensus 273 ~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 273 GGDNKVTLWKENLEG 287 (297)
T ss_dssp ETTSCEEEEEECTTS
T ss_pred cCCCcEEEEEECCCC
Confidence 999999999987543
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.89 E-value=1.7e-20 Score=198.12 Aligned_cols=238 Identities=14% Similarity=0.214 Sum_probs=176.2
Q ss_pred cEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccc
Q 003308 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (832)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~ 98 (832)
.++..+.++.++|||+.. +.....+..|.++|..+++.|+. .+|+.++.
T Consensus 37 ~l~s~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~~~---------------- 85 (312)
T 4ery_A 37 WLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS--------------NLLVSASD---------------- 85 (312)
T ss_dssp EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS--------------SEEEEEET----------------
T ss_pred EEEEeeCCCeEEEEeCCC-cccchhhccCCCceEEEEEcCCC--------------CEEEEECC----------------
Confidence 444445566799999986 56777788899999999998753 24554442
Q ss_pred cCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC--CEEEE-EeCCEEEEEECCCCceEEEEecC
Q 003308 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEYAILTN 174 (832)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~--r~LAV-a~~~~I~vwDl~t~~~~~tl~t~ 174 (832)
+++|++||+++++++.+++. ...|.++.+++ ++|++ +.+++|++||+.+++++.++..|
T Consensus 86 -----------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 86 -----------------DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp -----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred -----------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 27899999999999999975 67899999974 56666 57889999999999988877654
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeec
Q 003308 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (832)
Q Consensus 175 ~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~l 254 (832)
.. ++ .-+++.. ++.
T Consensus 149 ~~---------------~v----~~~~~~~---------------------------~~~-------------------- 162 (312)
T 4ery_A 149 SD---------------PV----SAVHFNR---------------------------DGS-------------------- 162 (312)
T ss_dssp SS---------------CE----EEEEECT---------------------------TSS--------------------
T ss_pred CC---------------cE----EEEEEcC---------------------------CCC--------------------
Confidence 21 11 1123321 011
Q ss_pred cCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCC
Q 003308 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSG 333 (832)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~-aH~~pIs~LaFSPdG 333 (832)
.++++..+|.|+|||+.+++.+..+. .|..+|.+++|+|+|
T Consensus 163 --------------------------------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (312)
T 4ery_A 163 --------------------------------------LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 204 (312)
T ss_dssp --------------------------------------EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS
T ss_pred --------------------------------------EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCC
Confidence 12234567899999999999888775 566789999999999
Q ss_pred CEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCcccc--EEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV--IQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 334 ~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~--I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
++|++++.||. |+|||+.++ ..+..+ .++.... +....+.+++++|++++.||+|+|||+..
T Consensus 205 ~~l~~~~~d~~-i~iwd~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 205 KYILAATLDNT-LKLWDYSKG--------------KCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp SEEEEEETTTE-EEEEETTTT--------------EEEEEE-CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred CEEEEEcCCCe-EEEEECCCC--------------cEEEEE-EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence 99999999987 999999876 344444 3333221 33333457899999999999999999998
Q ss_pred CCCceeeccCCCC
Q 003308 412 LGGSVNFQPTDAN 424 (832)
Q Consensus 412 ~g~~~~~~~H~~~ 424 (832)
......+.+|.+.
T Consensus 269 ~~~~~~~~~h~~~ 281 (312)
T 4ery_A 269 KEIVQKLQGHTDV 281 (312)
T ss_dssp CCEEEEECCCSSC
T ss_pred chhhhhhhccCCc
Confidence 7666788888543
No 22
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.89 E-value=6.9e-21 Score=202.15 Aligned_cols=294 Identities=10% Similarity=0.060 Sum_probs=181.6
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEeee----cCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccC
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSR----YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~----~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~D 93 (832)
..+++.+.++.++|||+........+-.. +++.|.++.+.|.... ...+|++++.
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------~~~~l~~~~~----------- 93 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNT----------SHPLLAVAGS----------- 93 (366)
T ss_dssp CEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTT----------CCEEEEEEET-----------
T ss_pred ceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCC----------CCCEEEEecC-----------
Confidence 45777777778999999874433333321 4588999999885311 0135555442
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCceE
Q 003308 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIE 168 (832)
Q Consensus 94 g~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S~---r~LAV-a~~~~I~vwDl~t~~~~ 168 (832)
+++|++||+.+++++.++. +...|.+++|++ ++|++ +.++.|++||+.+++.+
T Consensus 94 ----------------------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 151 (366)
T 3k26_A 94 ----------------------RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 151 (366)
T ss_dssp ----------------------TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE
T ss_pred ----------------------CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE
Confidence 1789999999999999998 578999999964 67776 56889999999999988
Q ss_pred EEEe---cCCCccCCCCCCCCCcccceeeecc--ceEEeeCCC--ceecCC--CccCCcccccccccccccCCCcceeee
Q 003308 169 YAIL---TNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSND--GRVNPQHLMQSRSFSGFASNGSRVAHY 239 (832)
Q Consensus 169 ~tl~---t~~~~~~~p~~~~~~~~~~p~Alg~--r~LAya~~~--~~~s~~--Grvsp~~l~~s~~~s~~~s~g~~V~~~ 239 (832)
..+. .+.. .+..+++++ ++|+.++.. +..+.. +.. ...+.....++ .++..+
T Consensus 152 ~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~---~~~~~~--- 212 (366)
T 3k26_A 152 AIFGGVEGHRD------------EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM-MNAIKESYDYN---PNKTNR--- 212 (366)
T ss_dssp EEECSTTSCSS------------CEEEEEECTTSSEEEEEETTSCEEEEESCSHHH-HHHHHHHHTCC---GGGCSS---
T ss_pred EEecccccccC------------ceeEEEECCCCCEEEEecCCCCEEEEECCCCcc-ccccceeEEec---CCCCcc---
Confidence 8873 3321 122345544 455554321 111210 000 00000000000 000000
Q ss_pred ecccccceeceeeeccCccccccccccccccCCCc-Ccccc-ccCCCCCCCcccccccccCCCCeEEEEECCCCc-----
Q 003308 240 AKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ-NSLQS-AIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----- 312 (832)
Q Consensus 240 A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~-~si~s-a~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~----- 312 (832)
+..........+.. ...+ ..+.. +.. ...++++..+|.|++||+.+++
T Consensus 213 --------~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~--------~~~l~~~~~d~~i~~wd~~~~~~~~~~ 267 (366)
T 3k26_A 213 --------PFISQKIHFPDFST---------RDIHRNYVDCVRWL--------GDLILSKSCENAIVCWKPGKMEDDIDK 267 (366)
T ss_dssp --------CCCCEEECCCSEEE---------CSSCSSCCCEEEEE--------TTEEEEECSSSEEEEEEESSTTCCGGG
T ss_pred --------cccceeeccCcccc---------ccCCcceEEEEEEc--------CCEEEEEecCCEEEEEeCCCccccccc
Confidence 00000000000000 0000 00000 000 1235677889999999998764
Q ss_pred ---------EEEEeccCCCCeEEEEEcCC--CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCc-c
Q 003308 313 ---------VIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT-N 380 (832)
Q Consensus 313 ---------~l~~~~aH~~pIs~LaFSPd--G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t-~ 380 (832)
.+..+..|..+|.+|+|+|+ |++||+++.||. |+|||+..+.. ....+..+ .++. .
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~-i~vwd~~~~~~----------~~~~~~~~-~~~~~~ 335 (366)
T 3k26_A 268 IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK-LYVWDLEVEDP----------HKAKCTTL-THHKCG 335 (366)
T ss_dssp CCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC-EEEEECCSSSG----------GGCEEEEE-CCTTCC
T ss_pred cccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc-EEEEECCCCCC----------ccccceEE-cccccC
Confidence 48899999999999999999 999999999998 89999987511 11233344 3332 3
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003308 381 AVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (832)
Q Consensus 381 a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~ 410 (832)
..|.+++|+||+++||+++.||+|+|||+.
T Consensus 336 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 336 AAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 569999999999999999999999999985
No 23
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.89 E-value=4.8e-21 Score=210.13 Aligned_cols=268 Identities=10% Similarity=0.097 Sum_probs=171.1
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCc-ccccCCcccccCCEEEEEeCCCCc---c----Cc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPIT-SKRSRDKFAEVRPLLVFCADGSRS---C----GT 89 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~-~~~~~d~f~~~rPLLavv~~g~~~---g----~~ 89 (832)
+.++..+.++.++|||+.. +.....+..|...|..+.+.|+... ...+.|. .+.++.-.... + ..
T Consensus 79 ~~l~s~s~D~~v~iWd~~~-~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~------~v~iw~~~~~~~~~~~~~~~~ 151 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWNALT-SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDS------ACSIFNLSSQADRDGNMPVSR 151 (380)
T ss_dssp SCEEEEETTSEEEEEETTT-TEEEEEEECCCTTCCCCEECTTSSEEEECCSSS------CCEEEECCCCSSCCCSSTTCC
T ss_pred CEEEEEeCCCeEEEEECCC-CccceEEecCCCCEEEEEECCCCCEEEEeeCCC------cEEEEECCCCccccCCcccee
Confidence 3455555566699999986 4555666778899999999886421 0111110 01111100000 0 00
Q ss_pred cccCCcccccCCC-CCCCCCCCCCCCCCCEEEEEECCCCcEEEEEe------CCCCEEEEEEc---CCEEEE-EeCCEEE
Q 003308 90 KVQDGLATACNGT-SANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK------FRSPIYSVRCS---SRVVAI-CQAAQVH 158 (832)
Q Consensus 90 ~~~Dg~~~~~~g~-~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~------f~s~V~sV~~S---~r~LAV-a~~~~I~ 158 (832)
....+.+...... .+...........+++|++||+++++++..+. +...|.++.++ +++|++ +.|++|+
T Consensus 152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~ 231 (380)
T 3iz6_a 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231 (380)
T ss_dssp BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence 0000000000000 00000001122357899999999999999883 34689999995 466766 5789999
Q ss_pred EEECCC-CceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCccee
Q 003308 159 CFDAAT-LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVA 237 (832)
Q Consensus 159 vwDl~t-~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~ 237 (832)
+||++. .+.+.++..|... +. -++|.+ ++.
T Consensus 232 ~wd~~~~~~~~~~~~~h~~~------------v~-------~v~~~p---------------------------~~~--- 262 (380)
T 3iz6_a 232 LWDLRITSRAVRTYHGHEGD------------IN-------SVKFFP---------------------------DGQ--- 262 (380)
T ss_dssp EEETTTTCCCCEEECCCSSC------------CC-------EEEECT---------------------------TSS---
T ss_pred EEECCCCCcceEEECCcCCC------------eE-------EEEEec---------------------------CCC---
Confidence 999984 4566666555321 11 122321 011
Q ss_pred eeecccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEe
Q 003308 238 HYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF 317 (832)
Q Consensus 238 ~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~ 317 (832)
.++++..||+|+|||+.+++.+..+
T Consensus 263 -------------------------------------------------------~l~s~s~D~~i~lwd~~~~~~~~~~ 287 (380)
T 3iz6_a 263 -------------------------------------------------------RFGTGSDDGTCRLFDMRTGHQLQVY 287 (380)
T ss_dssp -------------------------------------------------------EEEEECSSSCEEEEETTTTEEEEEE
T ss_pred -------------------------------------------------------eEEEEcCCCeEEEEECCCCcEEEEe
Confidence 1344567899999999999999888
Q ss_pred ccCCC-------CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe---ccCccccEEEEE
Q 003308 318 RAHKS-------PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGLTNAVIQDIS 387 (832)
Q Consensus 318 ~aH~~-------pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~---rG~t~a~I~~Ia 387 (832)
..|.. .|.+++|+|+|++|++|+.||+ |+|||+..+ ..+..+. .++ ...|.+++
T Consensus 288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~~--------------~~~~~~~~~~~~h-~~~v~~l~ 351 (380)
T 3iz6_a 288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLLA--------------EMVLNLGTLQNSH-EGRISCLG 351 (380)
T ss_dssp CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTTC--------------CEEEEECCSCSSC-CCCCCEEE
T ss_pred cccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCCC--------------ceEEEEecccCCC-CCceEEEE
Confidence 76532 4899999999999999999998 899999775 3334442 344 34699999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCC
Q 003308 388 FSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 388 FSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
|||||++||+||.|++|+||++...
T Consensus 352 ~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 352 LSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEECCSS
T ss_pred ECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999999999999999999999754
No 24
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.89 E-value=7.2e-21 Score=209.71 Aligned_cols=233 Identities=12% Similarity=0.185 Sum_probs=168.2
Q ss_pred CcEEEE-EecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLL-GYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~-Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
.+.|+. +.++.++|||+.. +.....+..|.+.|.++++.|+. .+|+.++.
T Consensus 135 g~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~--------------~~l~s~s~-------------- 185 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSG--------------DKLVSGSG-------------- 185 (393)
T ss_dssp SSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CCEEEEEcCCCeEEEEECCC-CcEEEEEccCCCCEEEEEEcCCC--------------CEEEEecC--------------
Confidence 344554 4556699999986 55666777899999999998753 24544432
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCceEEEEe
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEYAIL 172 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~---r~LAV-a~~~~I~vwDl~t~~~~~tl~ 172 (832)
+++|++||+++++++.++.....|.++++++ ++|++ +.++.|++||+.+++.+..+.
T Consensus 186 -------------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~ 246 (393)
T 1erj_A 186 -------------------DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 246 (393)
T ss_dssp -------------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred -------------------CCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeec
Confidence 2789999999999999999999999999964 67776 568899999999998776663
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceee
Q 003308 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (832)
Q Consensus 173 t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~ 252 (832)
..... ..+ ...++ .-|+|.. +|.
T Consensus 247 ~~~~~--~~~------h~~~v----~~v~~~~---------------------------~g~------------------ 269 (393)
T 1erj_A 247 SENES--GTG------HKDSV----YSVVFTR---------------------------DGQ------------------ 269 (393)
T ss_dssp --------CC------CSSCE----EEEEECT---------------------------TSS------------------
T ss_pred ccccC--CCC------CCCCE----EEEEECC---------------------------CCC------------------
Confidence 21100 000 00000 0112210 010
Q ss_pred eccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCC------------CcEEEEeccC
Q 003308 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS------------KNVIAQFRAH 320 (832)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s------------~~~l~~~~aH 320 (832)
.++++..||.|+|||+.+ +.+...+.+|
T Consensus 270 ----------------------------------------~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h 309 (393)
T 1erj_A 270 ----------------------------------------SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 309 (393)
T ss_dssp ----------------------------------------EEEEEETTSEEEEEEC---------------CEEEEEECC
T ss_pred ----------------------------------------EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc
Confidence 133456789999999975 3456788899
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEcc------CCCE
Q 003308 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD------DSNW 394 (832)
Q Consensus 321 ~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSp------Dg~~ 394 (832)
...|.+++|+|+|.+|++++.||+ |+|||+.++ ..+..+ +|+. ..|.+++|++ ++++
T Consensus 310 ~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~--------------~~~~~l-~~h~-~~v~~v~~~~~~~~~p~~~~ 372 (393)
T 1erj_A 310 KDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSG--------------NPLLML-QGHR-NSVISVAVANGSSLGPEYNV 372 (393)
T ss_dssp SSCEEEEEECGGGCEEEEEETTSE-EEEEETTTC--------------CEEEEE-ECCS-SCEEEEEECSSCTTCTTCEE
T ss_pred cCcEEEEEECCCCCEEEEEeCCCe-EEEEECCCC--------------eEEEEE-CCCC-CCEEEEEecCCcCcCCCCCE
Confidence 999999999999999999999997 899999876 344555 4554 4599999986 7899
Q ss_pred EEEEeCCCcEEEEecCCC
Q 003308 395 IMISSSRGTSHLFAINPL 412 (832)
Q Consensus 395 LAsgS~DgTVhIwdl~~~ 412 (832)
||+++.||+|+||++...
T Consensus 373 l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 373 FATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEETTSEEEEEEEEEC
T ss_pred EEEECCCCcEEECccccc
Confidence 999999999999998653
No 25
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.88 E-value=1.5e-20 Score=204.79 Aligned_cols=223 Identities=13% Similarity=0.126 Sum_probs=166.1
Q ss_pred CcEEEEEecCCeEEEEeccCC-----CeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCcccc
Q 003308 18 RRVLLLGYRSGFQVWDVEEAD-----NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~-----~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~ 92 (832)
..++..|.++.++||++.... .....+..|.+.|.++.+.|.. ..|+.++.
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~t~s~---------- 174 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD--------------MQILTASG---------- 174 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS--------------SEEEEEET----------
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC--------------CEEEEEeC----------
Confidence 344445556669999986421 2344556789999999998742 13443332
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC----CEEEE-EeCCEEEEEECCCCc
Q 003308 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLE 166 (832)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~----r~LAV-a~~~~I~vwDl~t~~ 166 (832)
+++|++||++++++++++.. ...|.++.+++ ++|++ +.+++|++||+.+++
T Consensus 175 -----------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~ 231 (354)
T 2pbi_B 175 -----------------------DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231 (354)
T ss_dssp -----------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC
T ss_pred -----------------------CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 27899999999999999975 67899998853 56666 578999999999999
Q ss_pred eEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003308 167 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (832)
Q Consensus 167 ~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~ 246 (832)
++.++..|... + .-++|.+ ++.
T Consensus 232 ~~~~~~~h~~~---------------v----~~v~~~p---------------------------~~~------------ 253 (354)
T 2pbi_B 232 CVQAFETHESD---------------V----NSVRYYP---------------------------SGD------------ 253 (354)
T ss_dssp EEEEECCCSSC---------------E----EEEEECT---------------------------TSS------------
T ss_pred EEEEecCCCCC---------------e----EEEEEeC---------------------------CCC------------
Confidence 88888665321 1 1123321 011
Q ss_pred eeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccC--CCCe
Q 003308 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH--KSPI 324 (832)
Q Consensus 247 lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH--~~pI 324 (832)
.++++..||+|+|||+.+++.+..+..+ ...+
T Consensus 254 ----------------------------------------------~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 254 ----------------------------------------------AFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp ----------------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred ----------------------------------------------EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 1233457889999999999888877654 3579
Q ss_pred EEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcE
Q 003308 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (832)
Q Consensus 325 s~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTV 404 (832)
.+++|+|+|++|++++.||+ |+|||+.++ ..+..+ .|+. ..|.+++|||||++||+++.|++|
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~--------------~~~~~l-~~h~-~~v~~l~~spdg~~l~sgs~D~~v 350 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYT-INVWDVLKG--------------SRVSIL-FGHE-NRVSTLRVSPDGTAFCSGSWDHTL 350 (354)
T ss_dssp EEEEECTTSSEEEEEETTSC-EEEEETTTC--------------SEEEEE-CCCS-SCEEEEEECTTSSCEEEEETTSEE
T ss_pred eEEEEeCCCCEEEEEECCCc-EEEEECCCC--------------ceEEEE-ECCC-CcEEEEEECCCCCEEEEEcCCCCE
Confidence 99999999999999999998 899999876 344455 4554 469999999999999999999999
Q ss_pred EEEe
Q 003308 405 HLFA 408 (832)
Q Consensus 405 hIwd 408 (832)
+||+
T Consensus 351 ~vW~ 354 (354)
T 2pbi_B 351 RVWA 354 (354)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
No 26
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.88 E-value=2.6e-20 Score=201.66 Aligned_cols=243 Identities=14% Similarity=0.193 Sum_probs=165.4
Q ss_pred CcEEEEEecCCeEEEEeccCCCe-eE-EeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNV-HD-LVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~-~e-llS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~ 95 (832)
+.++..+.++.++|||++..... .. +...|.+.|+++++.|+. .+||.++.
T Consensus 29 ~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--------------~~l~s~s~------------- 81 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG--------------NYLASASF------------- 81 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS--------------SEEEEEET-------------
T ss_pred CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC--------------CEEEEEEC-------------
Confidence 34555566677999999863211 22 224689999999998753 24554442
Q ss_pred ccccCCCCCCCCCCCCCCCCCCEEEEEECCCCc--EEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCce--
Q 003308 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEI-- 167 (832)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~--~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~-- 167 (832)
+++|+|||+.+++ ++.++.. ...|.+|+|+ +++||+ +.|++|++||+.+.+.
T Consensus 82 --------------------D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 82 --------------------DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp --------------------TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred --------------------CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 2679999998874 5677764 6799999997 467776 5688999999987643
Q ss_pred -EEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003308 168 -EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (832)
Q Consensus 168 -~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~ 246 (832)
+..+..|.. ++ ..+++.. ++.
T Consensus 142 ~~~~~~~h~~---------------~v----~~~~~~p---------------------------~~~------------ 163 (345)
T 3fm0_A 142 CVSVLNSHTQ---------------DV----KHVVWHP---------------------------SQE------------ 163 (345)
T ss_dssp EEEEECCCCS---------------CE----EEEEECS---------------------------SSS------------
T ss_pred EEEEecCcCC---------------Ce----EEEEECC---------------------------CCC------------
Confidence 233333211 01 1122321 010
Q ss_pred eeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc--EEEEeccCCCCe
Q 003308 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSPI 324 (832)
Q Consensus 247 lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~--~l~~~~aH~~pI 324 (832)
.++++..+|.|+|||+.+++ ++..+.+|..+|
T Consensus 164 ----------------------------------------------~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v 197 (345)
T 3fm0_A 164 ----------------------------------------------LLASASYDDTVKLYREEEDDWVCCATLEGHESTV 197 (345)
T ss_dssp ----------------------------------------------CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ----------------------------------------------EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCce
Confidence 12345678899999998875 557899999999
Q ss_pred EEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCC-CCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCc
Q 003308 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILG-TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGT 403 (832)
Q Consensus 325 s~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~-~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgT 403 (832)
.+|+|+|+|++||+++.||+ |+|||....... .....+.......+..+ .+.+...|++++|+|++.+||+++.|++
T Consensus 198 ~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d~~ 275 (345)
T 3fm0_A 198 WSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDPSWKCICTL-SGFHSRTIYDIAWCQLTGALATACGDDA 275 (345)
T ss_dssp EEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---CEEEEEEEE-CSSCSSCEEEEEECTTTCCEEEEETTSC
T ss_pred EEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCCccceeEEe-cCCCCCcEEEEEEecCCCEEEEEeCCCe
Confidence 99999999999999999998 899997432110 00001111123344455 3444556999999999999999999999
Q ss_pred EEEEecCCCC
Q 003308 404 SHLFAINPLG 413 (832)
Q Consensus 404 VhIwdl~~~g 413 (832)
|+||++.+..
T Consensus 276 i~vw~~~~~~ 285 (345)
T 3fm0_A 276 IRVFQEDPNS 285 (345)
T ss_dssp EEEEEECTTS
T ss_pred EEEEEeCCCC
Confidence 9999997653
No 27
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.88 E-value=5.2e-20 Score=194.33 Aligned_cols=216 Identities=15% Similarity=0.207 Sum_probs=166.8
Q ss_pred eeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCCCCCEE
Q 003308 40 VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVV 119 (832)
Q Consensus 40 ~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tV 119 (832)
....+..|.++|.++++.|+. .+|+.++. +++|
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~--------------~~l~s~~~---------------------------------dg~i 47 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNG--------------EWLASSSA---------------------------------DKLI 47 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTS--------------SEEEEEET---------------------------------TSCE
T ss_pred eEEEEcccCCcEEEEEECCCC--------------CEEEEeeC---------------------------------CCeE
Confidence 344455789999999998743 24554442 1679
Q ss_pred EEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccceeee
Q 003308 120 HFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAV 195 (832)
Q Consensus 120 rlWDL~Tg~~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Al 195 (832)
++||+.+++++..+.. ...|.+++|+ +++|++ +.++.|++||+.+++++.++..|... +
T Consensus 48 ~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---------------v-- 110 (312)
T 4ery_A 48 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---------------V-- 110 (312)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC---------------E--
T ss_pred EEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC---------------E--
Confidence 9999999999998874 6789999997 466766 57889999999999988888766321 1
Q ss_pred ccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCCCcC
Q 003308 196 GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQN 275 (832)
Q Consensus 196 g~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~ 275 (832)
..++|.. ++.
T Consensus 111 --~~~~~~~---------------------------~~~----------------------------------------- 120 (312)
T 4ery_A 111 --FCCNFNP---------------------------QSN----------------------------------------- 120 (312)
T ss_dssp --EEEEECS---------------------------SSS-----------------------------------------
T ss_pred --EEEEEcC---------------------------CCC-----------------------------------------
Confidence 1123321 011
Q ss_pred ccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCC
Q 003308 276 SLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI 355 (832)
Q Consensus 276 si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~ 355 (832)
.++++..+|.|+|||+.+++++..+..|..+|.+++|+|+|++|++++.||+ |++||+.++
T Consensus 121 -----------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~wd~~~~- 181 (312)
T 4ery_A 121 -----------------LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASG- 181 (312)
T ss_dssp -----------------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTC-
T ss_pred -----------------EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc-EEEEECCCC-
Confidence 1223456789999999999999999999999999999999999999999998 899999876
Q ss_pred CCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCC
Q 003308 356 LGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (832)
Q Consensus 356 ~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~ 422 (832)
..+..+... ....|..++|+||+++|++++.|++|+|||+........+.+|.
T Consensus 182 -------------~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 234 (312)
T 4ery_A 182 -------------QCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234 (312)
T ss_dssp -------------CEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC
T ss_pred -------------ceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC
Confidence 344444332 23459999999999999999999999999998876666777764
No 28
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.88 E-value=7.5e-20 Score=197.29 Aligned_cols=239 Identities=15% Similarity=0.235 Sum_probs=160.8
Q ss_pred cEEEEEecCCeEEEEeccCC------CeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCcccc
Q 003308 19 RVLLLGYRSGFQVWDVEEAD------NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (832)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~------~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~ 92 (832)
.++..+.++.++|||+.... .....+..|.++|.++.+.|+. .+|+.++.
T Consensus 41 ~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--------------~~l~s~s~---------- 96 (343)
T 2xzm_R 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--------------CFAISSSW---------- 96 (343)
T ss_dssp EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--------------TEEEEEET----------
T ss_pred EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--------------CEEEEEcC----------
Confidence 44555556679999997521 2344566789999999998742 24443332
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEcC--CEEEE-EeCCEEEEEECCCCceE
Q 003308 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIE 168 (832)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S~--r~LAV-a~~~~I~vwDl~t~~~~ 168 (832)
+++|+|||++++++++++. +...|++|+|++ +.|++ +.+++|++||+.. ++.
T Consensus 97 -----------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~ 152 (343)
T 2xzm_R 97 -----------------------DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECK 152 (343)
T ss_dssp -----------------------TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEE
T ss_pred -----------------------CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-Cce
Confidence 2789999999999999987 477999999974 56665 6789999999973 333
Q ss_pred EEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccccee
Q 003308 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (832)
Q Consensus 169 ~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~la 248 (832)
..+..... ....+ ..++|.... ....
T Consensus 153 ~~~~~~~~------------~~~~v----~~~~~~~~~---------------------------~~~~----------- 178 (343)
T 2xzm_R 153 FSSAEKEN------------HSDWV----SCVRYSPIM---------------------------KSAN----------- 178 (343)
T ss_dssp EECCTTTS------------CSSCE----EEEEECCCC---------------------------CSCS-----------
T ss_pred eeeecccC------------CCcee----eeeeecccc---------------------------cccc-----------
Confidence 33221100 00011 123343110 0000
Q ss_pred ceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEE
Q 003308 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALC 328 (832)
Q Consensus 249 sGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~La 328 (832)
...|. ...++++..+|.|+||| ...+.+..+++|..+|.+++
T Consensus 179 -------------------~~~~~------------------~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~ 220 (343)
T 2xzm_R 179 -------------------KVQPF------------------APYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLS 220 (343)
T ss_dssp -------------------CCCSS------------------CCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEE
T ss_pred -------------------ccCCC------------------CCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEE
Confidence 00000 01244567789999999 45677889999999999999
Q ss_pred EcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003308 329 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (832)
Q Consensus 329 FSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwd 408 (832)
|+|||++||||+.||+ |+|||+.... .....+..+ ..|.+++|+||+++|+++ .|++|+||+
T Consensus 221 ~s~~g~~l~sgs~dg~-v~iwd~~~~~-------------~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~ 282 (343)
T 2xzm_R 221 ISPNGKYIATGGKDKK-LLIWDILNLT-------------YPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFN 282 (343)
T ss_dssp ECTTSSEEEEEETTCE-EEEEESSCCS-------------SCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEE
T ss_pred ECCCCCEEEEEcCCCe-EEEEECCCCc-------------ccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEE
Confidence 9999999999999997 8999995430 111222222 349999999999998765 588899999
Q ss_pred cCCCCCc
Q 003308 409 INPLGGS 415 (832)
Q Consensus 409 l~~~g~~ 415 (832)
+.+....
T Consensus 283 ~~~~~~~ 289 (343)
T 2xzm_R 283 LMTQSKA 289 (343)
T ss_dssp SSSCCSC
T ss_pred eCCCCCC
Confidence 9875543
No 29
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.88 E-value=1.8e-19 Score=188.26 Aligned_cols=270 Identities=14% Similarity=0.200 Sum_probs=177.2
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEee--ecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS--~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~ 95 (832)
..+|++|.++.++|||+++ +++..++. .|.+.|.++++.|+. .+||.++.
T Consensus 36 ~~~lAvg~D~tV~iWd~~t-g~~~~~~~~~~~~~~V~~v~~~~~~--------------~~l~sgs~------------- 87 (318)
T 4ggc_A 36 GNVLAVALDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEG--------------NYLAVGTS------------- 87 (318)
T ss_dssp TSEEEEEETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTS--------------SEEEEEET-------------
T ss_pred CCEEEEEeCCEEEEEECCC-CCEEEEEEecCCCCeEEEEEECCCC--------------CEEEEEEC-------------
Confidence 3589999999999999987 66767665 467789999998753 24554432
Q ss_pred ccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEE-EeCCEEEEEECCCCc-eEEEEe
Q 003308 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLE-IEYAIL 172 (832)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~r~LAV-a~~~~I~vwDl~t~~-~~~tl~ 172 (832)
+++|++||++++++++++.. ...+.++.+.++++++ +.++.+++|+..+.. .+.++.
T Consensus 88 --------------------Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~ 147 (318)
T 4ggc_A 88 --------------------SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147 (318)
T ss_dssp --------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred --------------------CCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence 27899999999999999986 5678888888888887 567799999988764 455666
Q ss_pred cCCCccCCCCCCCCCcccceeeecc--ceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003308 173 TNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (832)
Q Consensus 173 t~~~~~~~p~~~~~~~~~~p~Alg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasG 250 (832)
.|.... ..++..+ +.|+.++. ...|.-|-....+....-
T Consensus 148 ~~~~~~------------~~~~~~~~~~~l~s~~~---------------------------d~~i~iwd~~~~~~~~~~ 188 (318)
T 4ggc_A 148 GHSQEV------------CGLRWAPDGRHLASGGN---------------------------DNLVNVWPSAPGEGGWVP 188 (318)
T ss_dssp CCSSCE------------EEEEECTTSSEEEEEET---------------------------TSCEEEEESSCBTTBSCC
T ss_pred CccCce------------EEEEEcCCCCEEEEEec---------------------------CcceeEEECCCCcccccc
Confidence 553211 1122221 33443321 111111111111000000
Q ss_pred eeeccCccccccccccccccCCCcCcccc--ccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEE
Q 003308 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQS--AIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALC 328 (832)
Q Consensus 251 i~~lGd~g~~~ls~y~~~~~p~~~~si~s--a~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~La 328 (832)
+.. .....+.+.. ..+... +. -..+++..++.|+|||.........+ .|...|.+++
T Consensus 189 ~~~----------------~~~~~~~v~~~~~~~~~~-~~---~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~ 247 (318)
T 4ggc_A 189 LQT----------------FTQHQGAVKAVAWCPWQS-NV---LATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSIL 247 (318)
T ss_dssp SEE----------------ECCCCSCEEEEEECTTST-TE---EEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEE
T ss_pred eee----------------ecccCCceEEEEecCCCC-cE---EEEEecCCCCEEEEEecccccccccc-cceeeeeeee
Confidence 000 0000000000 001100 00 01234567899999999998776554 5667899999
Q ss_pred EcCCCCEEEEEE--cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEE
Q 003308 329 FDPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 406 (832)
Q Consensus 329 FSPdG~lLATaS--~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhI 406 (832)
|+|++..|++++ .||+ |+|||+.++ ..+.+| +||. ..|.+|+|||||++||++|.||+|+|
T Consensus 248 ~~~~~~~~~~~sg~~d~~-i~iwd~~~~--------------~~~~~l-~gH~-~~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 248 WSPHYKELISGHGFAQNQ-LVIWKYPTM--------------AKVAEL-KGHT-SRVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp EETTTTEEEEEECTTTCC-EEEEETTTC--------------CEEEEE-CCCS-SCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred ecccccceEEEEEcCCCE-EEEEECCCC--------------cEEEEE-cCCC-CCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 999999988776 6887 899999876 566676 4664 46999999999999999999999999
Q ss_pred EecCCC
Q 003308 407 FAINPL 412 (832)
Q Consensus 407 wdl~~~ 412 (832)
||+...
T Consensus 311 Wd~~~~ 316 (318)
T 4ggc_A 311 WRCFEL 316 (318)
T ss_dssp ECCSCC
T ss_pred EECCCC
Confidence 999653
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.88 E-value=4.1e-21 Score=210.74 Aligned_cols=266 Identities=14% Similarity=0.181 Sum_probs=169.5
Q ss_pred EEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCC
Q 003308 30 QVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDL 109 (832)
Q Consensus 30 qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~ 109 (832)
.+|+... ..+...+..|.++|.++++.|+. .+|+.++.
T Consensus 49 ~~~~~~~-~~~~~~l~gH~~~V~~~~~sp~~--------------~~l~s~s~--------------------------- 86 (380)
T 3iz6_a 49 VSFNPTD-LVCCRTLQGHSGKVYSLDWTPEK--------------NWIVSASQ--------------------------- 86 (380)
T ss_dssp CCCCCCC-CEEEEEECCCSSCEEEEEECTTS--------------SCEEEEET---------------------------
T ss_pred cccccce-eEEeecccccccEEEEEEEcCCC--------------CEEEEEeC---------------------------
Confidence 3455543 34556677899999999998853 23544432
Q ss_pred CCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCce-------EEEEecCCCcc
Q 003308 110 GNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEI-------EYAILTNPIVM 178 (832)
Q Consensus 110 g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~-------~~tl~t~~~~~ 178 (832)
+++|+|||+.+++.+++++. ...|.+++|+ +++||+ +.++.|++||+.+... ...+.+|...
T Consensus 87 ------D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~- 159 (380)
T 3iz6_a 87 ------DGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY- 159 (380)
T ss_dssp ------TSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC-
T ss_pred ------CCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc-
Confidence 27899999999999999986 5689999997 467776 6789999999976431 1222222110
Q ss_pred CCCCCCCCCcccceeeecc---ceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeecc
Q 003308 179 GHPSAGGIGIGYGPLAVGP---RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 255 (832)
Q Consensus 179 ~~p~~~~~~~~~~p~Alg~---r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lG 255 (832)
...+++.| ..|+.++ .+..+.-|-....+.+. .++
T Consensus 160 -----------v~~~~~~~~~~~~l~s~s---------------------------~D~~i~~wd~~~~~~~~----~~~ 197 (380)
T 3iz6_a 160 -----------ASSCQYVPDQETRLITGS---------------------------GDQTCVLWDVTTGQRIS----IFG 197 (380)
T ss_dssp -----------CCCCBCCSSSSSCEEEEC---------------------------TTSCEEEECTTTCCEEE----EEC
T ss_pred -----------eEEEEEecCCCCEEEEEC---------------------------CCCcEEEEEcCCCcEEE----Eee
Confidence 00111111 1122221 12223222222221111 000
Q ss_pred CccccccccccccccCCCcC-cccc-ccCCCCCCCcccccccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEEcCC
Q 003308 256 DLGYKKLSQYCSEFLPDSQN-SLQS-AIPGGKSNGTVNGHFPDADNVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDPS 332 (832)
Q Consensus 256 d~g~~~ls~y~~~~~p~~~~-si~s-a~~~~~~~g~~~g~~~s~~~~G~V~IwDl~-s~~~l~~~~aH~~pIs~LaFSPd 332 (832)
. ..+.++. .+.. +... .++ ..++++..||.|+|||+. ..+++..+.+|..+|.+|+|+|+
T Consensus 198 ~------------~~~~~h~~~v~~~~~~~--~~~---~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~ 260 (380)
T 3iz6_a 198 S------------EFPSGHTADVLSLSINS--LNA---NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD 260 (380)
T ss_dssp C------------CSSSSCCSCEEEEEECS--SSC---CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT
T ss_pred c------------ccCCCCccCeEEEEeec--CCC---CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC
Confidence 0 0011111 0100 0000 011 246678899999999998 56788999999999999999999
Q ss_pred CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCc-----cccEEEEEEccCCCEEEEEeCCCcEEEE
Q 003308 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT-----NAVIQDISFSDDSNWIMISSSRGTSHLF 407 (832)
Q Consensus 333 G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t-----~a~I~~IaFSpDg~~LAsgS~DgTVhIw 407 (832)
|++||||+.||+ |+|||+.++ ..+..+..... ...|.+++|+|+|++|++++.||+|+||
T Consensus 261 ~~~l~s~s~D~~-i~lwd~~~~--------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw 325 (380)
T 3iz6_a 261 GQRFGTGSDDGT-CRLFDMRTG--------------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325 (380)
T ss_dssp SSEEEEECSSSC-EEEEETTTT--------------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred CCeEEEEcCCCe-EEEEECCCC--------------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
Confidence 999999999998 999999886 33333322111 1238899999999999999999999999
Q ss_pred ecCCCCCceee
Q 003308 408 AINPLGGSVNF 418 (832)
Q Consensus 408 dl~~~g~~~~~ 418 (832)
|+........+
T Consensus 326 d~~~~~~~~~~ 336 (380)
T 3iz6_a 326 DTLLAEMVLNL 336 (380)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCceEEEE
Confidence 99876555555
No 31
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.87 E-value=3.9e-20 Score=211.06 Aligned_cols=217 Identities=17% Similarity=0.286 Sum_probs=163.6
Q ss_pred CcEEEEEecCC-eEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~Gy~~G-~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
.+.|+.|..++ +++||.+ +.....+..|.++|+++++.|+.. +|+.++.
T Consensus 356 g~~l~~~~~dg~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~dg~--------------~l~~~~~-------------- 405 (577)
T 2ymu_A 356 GQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQ--------------TIASASD-------------- 405 (577)
T ss_dssp SSEEEEEETTSEEEEEETT--CCEEEEEECCSSCEEEEEECTTSS--------------CEEEEET--------------
T ss_pred CCEEEEEeCCCEEEEEcCC--CCEEEEecCCCCCeEEEEECCCCC--------------EEEEEeC--------------
Confidence 55666666655 8999964 456667778999999999987531 3444432
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEe
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~ 172 (832)
+++|++||. +++.++++.. ...|.+++|+ .++|++ +.+++|++||+ +++.+.++.
T Consensus 406 -------------------d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~ 464 (577)
T 2ymu_A 406 -------------------DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLT 464 (577)
T ss_dssp -------------------TSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred -------------------CCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEc
Confidence 278999995 6788888764 6799999997 467776 56789999996 567777776
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceee
Q 003308 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (832)
Q Consensus 173 t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~ 252 (832)
.|.. ++ +.++|++ ++..
T Consensus 465 ~~~~---------------~v----~~~~~sp---------------------------d~~~----------------- 481 (577)
T 2ymu_A 465 GHSS---------------SV----RGVAFSP---------------------------DGQT----------------- 481 (577)
T ss_dssp CCSS---------------CE----EEEEECT---------------------------TSCE-----------------
T ss_pred CCCC---------------CE----EEEEEcC---------------------------CCCE-----------------
Confidence 6532 11 1234431 1111
Q ss_pred eccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC
Q 003308 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (832)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPd 332 (832)
++++..+|.|+|||. +++++..+.+|..+|++|+|+||
T Consensus 482 -----------------------------------------las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~d 519 (577)
T 2ymu_A 482 -----------------------------------------IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD 519 (577)
T ss_dssp -----------------------------------------EEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT
T ss_pred -----------------------------------------EEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCC
Confidence 123456789999995 67889999999999999999999
Q ss_pred CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003308 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (832)
Q Consensus 333 G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwd 408 (832)
|++||+++.||+ |+|||. ++ ..+..+ +||. ..|++++|+|||++|++++.|++|+|||
T Consensus 520 g~~l~s~~~dg~-v~lwd~-~~--------------~~~~~~-~~h~-~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 520 GQTIASASDDKT-VKLWNR-NG--------------QLLQTL-TGHS-SSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSE-EEEECT-TS--------------CEEEEE-ECCS-SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECcCE-EEEEeC-CC--------------CEEEEE-cCCC-CCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999987 999995 33 345555 4654 4699999999999999999999999997
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.87 E-value=1.7e-20 Score=204.96 Aligned_cols=185 Identities=11% Similarity=0.129 Sum_probs=140.4
Q ss_pred CEEEEEECCCCcEEEEE-eCCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccce
Q 003308 117 TVVHFYSLRSQSYVHML-KFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL-~f~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p 192 (832)
++|++||+.+++++..+ .+...|.+++|+ +++|++ +.+++|++||+.+++++.++..|...
T Consensus 119 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~--------------- 183 (420)
T 3vl1_A 119 GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT--------------- 183 (420)
T ss_dssp SCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC---------------
T ss_pred CCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc---------------
Confidence 67999999999998887 467899999997 456776 56789999999999988888765321
Q ss_pred eeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCC
Q 003308 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (832)
Q Consensus 193 ~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~ 272 (832)
+ .-|++.. ++.
T Consensus 184 v----~~~~~~~---------------------------~~~-------------------------------------- 194 (420)
T 3vl1_A 184 V----TDIAIID---------------------------RGR-------------------------------------- 194 (420)
T ss_dssp E----EEEEEET---------------------------TTT--------------------------------------
T ss_pred E----EEEEEcC---------------------------CCC--------------------------------------
Confidence 1 1123331 011
Q ss_pred CcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccC---CCC---------------------eEEEE
Q 003308 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH---KSP---------------------ISALC 328 (832)
Q Consensus 273 ~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH---~~p---------------------Is~La 328 (832)
.++++..+|.|+|||+.+++++..+..| ... |.+++
T Consensus 195 --------------------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 195 --------------------NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp --------------------EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred --------------------EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 1223456789999999999999999853 334 44455
Q ss_pred EcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCC-EEEEEeCCCcEEEE
Q 003308 329 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLF 407 (832)
Q Consensus 329 FSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~-~LAsgS~DgTVhIw 407 (832)
|+|+|++|++++.||+ |+|||+.++ ..+..+..++ ...|.+++|+|+++ +|++++.||+|+||
T Consensus 255 ~s~~~~~l~~~~~dg~-i~i~d~~~~--------------~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vw 318 (420)
T 3vl1_A 255 FGTYGKYVIAGHVSGV-ITVHNVFSK--------------EQTIQLPSKF-TCSCNSLTVDGNNANYIYAGYENGMLAQW 318 (420)
T ss_dssp SSCTTEEEEEEETTSC-EEEEETTTC--------------CEEEEECCTT-SSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EcCCCCEEEEEcCCCe-EEEEECCCC--------------ceeEEccccc-CCCceeEEEeCCCCCEEEEEeCCCeEEEE
Confidence 6899999999999998 899999876 3455554443 34699999999999 99999999999999
Q ss_pred ecCCCCC-ceeeccC
Q 003308 408 AINPLGG-SVNFQPT 421 (832)
Q Consensus 408 dl~~~g~-~~~~~~H 421 (832)
|+..... ...+..|
T Consensus 319 d~~~~~~~~~~~~~~ 333 (420)
T 3vl1_A 319 DLRSPECPVGEFLIN 333 (420)
T ss_dssp ETTCTTSCSEEEEES
T ss_pred EcCCCcCchhhhhcc
Confidence 9988655 4566664
No 33
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.87 E-value=1.7e-19 Score=205.75 Aligned_cols=232 Identities=15% Similarity=0.231 Sum_probs=167.9
Q ss_pred CcEEEE-EecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLL-GYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~-Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
.+.|+. +.++.+++||.+ +...+.+..|.++|..+.+.|+. .+|+.++.
T Consensus 274 ~~~l~~~~~d~~i~~w~~~--~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~t~~~-------------- 323 (577)
T 2ymu_A 274 GQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDG--------------QTIASASD-------------- 323 (577)
T ss_dssp SSEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CCEEEEEeCCCEEEEEeCC--CcEEEEEecCCCCeEEEEECCCC--------------CEEEEEeC--------------
Confidence 344444 455569999975 45667777899999999988742 24554442
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEe
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~ 172 (832)
+++|++||+.+.+ +..+. +...|.+++++ ++.||+ +.++.|++||. +++.+.++.
T Consensus 324 -------------------d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~ 382 (577)
T 2ymu_A 324 -------------------DKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 382 (577)
T ss_dssp -------------------TSCEEEEETTSCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE
T ss_pred -------------------CCeEEEEeCCCCe-eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec
Confidence 1679999986554 55554 46799999997 467776 56789999995 567777776
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceee
Q 003308 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (832)
Q Consensus 173 t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~ 252 (832)
.|.. ++ +-|+|+. +|..
T Consensus 383 ~~~~---------------~v----~~~~~s~---------------------------dg~~----------------- 399 (577)
T 2ymu_A 383 GHSS---------------SV----RGVAFSP---------------------------DGQT----------------- 399 (577)
T ss_dssp CCSS---------------CE----EEEEECT---------------------------TSSC-----------------
T ss_pred CCCC---------------Ce----EEEEECC---------------------------CCCE-----------------
Confidence 5521 11 1233431 1111
Q ss_pred eccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC
Q 003308 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (832)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPd 332 (832)
++++..+|.|+|||. +++.+..+.+|..+|.+|+|+||
T Consensus 400 -----------------------------------------l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d 437 (577)
T 2ymu_A 400 -----------------------------------------IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD 437 (577)
T ss_dssp -----------------------------------------EEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT
T ss_pred -----------------------------------------EEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCC
Confidence 223456789999995 56788999999999999999999
Q ss_pred CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003308 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 333 G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
+++||+++.||+ |++||... ..+..+ .++. ..|.+++|+||+++||+++.|++|+||+. ++
T Consensus 438 ~~~l~~~~~d~~-v~~w~~~~---------------~~~~~~-~~~~-~~v~~~~~spd~~~las~~~d~~i~iw~~-~~ 498 (577)
T 2ymu_A 438 DQTIASASDDKT-VKLWNRNG---------------QLLQTL-TGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 498 (577)
T ss_dssp SSEEEEEETTSE-EEEEETTS---------------CEEEEE-ECCS-SCEEEEEECTTSCEEEEEETTSEEEEEET-TS
T ss_pred CCEEEEEcCCCE-EEEEECCC---------------CEEEEE-cCCC-CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC
Confidence 999999999987 89999643 234444 3443 46999999999999999999999999996 44
Q ss_pred CCceeeccCCCC
Q 003308 413 GGSVNFQPTDAN 424 (832)
Q Consensus 413 g~~~~~~~H~~~ 424 (832)
.....+.+|...
T Consensus 499 ~~~~~~~~h~~~ 510 (577)
T 2ymu_A 499 QLLQTLTGHSSS 510 (577)
T ss_dssp CEEEEEECCSSC
T ss_pred CEEEEEeCCCCC
Confidence 455677788543
No 34
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.9e-19 Score=190.83 Aligned_cols=250 Identities=11% Similarity=0.100 Sum_probs=177.8
Q ss_pred CcEEEEEe-cCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~Gy-~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
.+.|+.|. ++.++|||+.. +.....+..|.++|.++++.|+. .+|+.++.
T Consensus 44 ~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~~~-------------- 94 (369)
T 3zwl_B 44 GDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDVDCFT--------------KYCVTGSA-------------- 94 (369)
T ss_dssp SCEEEEEESSSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CCEEEEEeCCCEEEEEeCCC-chhhhhhhhcCCcEEEEEEcCCC--------------CEEEEEeC--------------
Confidence 44555554 55699999986 56666777899999999998742 24554442
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEE-eC-----CEEEEEECCCCceE
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC-QA-----AQVHCFDAATLEIE 168 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~r~LAVa-~~-----~~I~vwDl~t~~~~ 168 (832)
+++|++||+.+++++..+.+...|.+++|+ .+.|+++ .+ +.|++||+.+....
T Consensus 95 -------------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~ 155 (369)
T 3zwl_B 95 -------------------DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSAT 155 (369)
T ss_dssp -------------------TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTT
T ss_pred -------------------CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccc
Confidence 278999999999999999999999999997 4667664 44 79999998876533
Q ss_pred EEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccccee
Q 003308 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (832)
Q Consensus 169 ~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~la 248 (832)
..+...... ++. .+.. +.+ ...+...+.
T Consensus 156 ~~~~~~~~~--------------~~~------~~~~------~~~-------------------~~~~~~~~~------- 183 (369)
T 3zwl_B 156 HELTKVSEE--------------PIH------KIIT------HEG-------------------LDAATVAGW------- 183 (369)
T ss_dssp CCEEEECSS--------------CSE------EEEC------CTT-------------------CCCEEEEEE-------
T ss_pred eeecccccc--------------eee------eccC------CcC-------------------ccceeEEEE-------
Confidence 222211000 000 0000 000 000000000
Q ss_pred ceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEE
Q 003308 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISAL 327 (832)
Q Consensus 249 sGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s-~~~l~~~~aH~~pIs~L 327 (832)
.|+ | ..++.+..+|.|++||+.+ .+.+..+..|..+|.++
T Consensus 184 ---------------------~~~---------------~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 224 (369)
T 3zwl_B 184 ---------------------STK---------------G---KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224 (369)
T ss_dssp ---------------------CGG---------------G---CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred ---------------------cCC---------------C---CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence 000 0 0133456789999999999 78999999999999999
Q ss_pred EEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCC-----
Q 003308 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG----- 402 (832)
Q Consensus 328 aFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~Dg----- 402 (832)
+|+|+|.+|++++.||+ |++||+.++ ..+..+. ....+.+++|+|+++++++++.++
T Consensus 225 ~~~~~~~~l~~~~~d~~-i~v~d~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 225 QFSPDLTYFITSSRDTN-SFLVDVSTL--------------QVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp EECTTSSEEEEEETTSE-EEEEETTTC--------------CEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred EECCCCCEEEEecCCce-EEEEECCCC--------------ceeeeec---CCCCceeEEecCCCceEEEeecCCCceEE
Confidence 99999999999999987 899999876 3444443 234599999999999999999999
Q ss_pred ---------cEEEEecCCCCCceeeccCCCC
Q 003308 403 ---------TSHLFAINPLGGSVNFQPTDAN 424 (832)
Q Consensus 403 ---------TVhIwdl~~~g~~~~~~~H~~~ 424 (832)
++++|++........+.+|...
T Consensus 287 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 317 (369)
T 3zwl_B 287 TTSANEGKFEARFYHKIFEEEIGRVQGHFGP 317 (369)
T ss_dssp --------CEEEEEETTTCCEEEEEECCSSC
T ss_pred EEecCCCcceeEEEecCCCcchhheecccCc
Confidence 8999999887777777777543
No 35
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.87 E-value=1.5e-20 Score=205.30 Aligned_cols=242 Identities=11% Similarity=0.106 Sum_probs=149.8
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCccc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~ 97 (832)
..++........+.|++... ....|++.|++++|.|++. +||.++...
T Consensus 17 ~~~~~~~g~~~~~~w~~p~~-----~p~~H~~~V~~v~fSpDG~--------------~las~s~d~------------- 64 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPVT-----APACMEVQIGAVRYRRDGA--------------LLLAASSLS------------- 64 (357)
T ss_dssp ----------------------------CCCSEEEEEEECSSSC--------------EEEEEECSS-------------
T ss_pred ceEEecCCCccccccCCCCC-----CcccccCCEEEEEECCCCC--------------EEEEEcCCC-------------
Confidence 44555555666799998752 1235899999999998642 565554321
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEE-----EEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEE
Q 003308 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYV-----HMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYA 170 (832)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V-----~tL~f~s~V~sV~~S--~r~LAVa~~~~I~vwDl~t~~~~~t 170 (832)
...++++|++|+..++... ....+...|.+|+|+ .++|+.+.+++|+|||+.+++.+..
T Consensus 65 --------------~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~ 130 (357)
T 4g56_B 65 --------------SRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLV 130 (357)
T ss_dssp --------------SSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CC
T ss_pred --------------CccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEE
Confidence 1225689999999887643 344567889999997 4677778899999999988764321
Q ss_pred E----ecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003308 171 I----LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (832)
Q Consensus 171 l----~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~ 246 (832)
. ..|. +++ +.|+|.. +|.
T Consensus 131 ~~~~~~~h~---------------~~V----~~v~~sp---------------------------dg~------------ 152 (357)
T 4g56_B 131 NKFAKYEHD---------------DIV----KTLSVFS---------------------------DGT------------ 152 (357)
T ss_dssp CCEEECCCS---------------SCE----EEEEECS---------------------------SSS------------
T ss_pred EeeccCCCC---------------CCE----EEEEECC---------------------------CCC------------
Confidence 1 1110 001 1122221 011
Q ss_pred eeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEE
Q 003308 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA 326 (832)
Q Consensus 247 lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~ 326 (832)
.++++..+|.|+|||+.+++++..|++|..+|.+
T Consensus 153 ----------------------------------------------~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 186 (357)
T 4g56_B 153 ----------------------------------------------QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNC 186 (357)
T ss_dssp ----------------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred ----------------------------------------------EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence 1234567889999999999999999999999999
Q ss_pred EEEcCCCC-EEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccC-CCEEEEEeCCCcE
Q 003308 327 LCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTS 404 (832)
Q Consensus 327 LaFSPdG~-lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpD-g~~LAsgS~DgTV 404 (832)
|+|+|++. +|++++.||+ |+|||+.++. .+..+........|.+++|+|+ +++||+++.|++|
T Consensus 187 v~~s~~~~~~~~s~~~dg~-v~~wd~~~~~--------------~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 187 VAACPGKDTIFLSCGEDGR-ILLWDTRKPK--------------PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp EEECTTCSSCEEEEETTSC-EEECCTTSSS--------------CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred EEEccCCCceeeeeccCCc-eEEEECCCCc--------------eeeeeeeccccccccchhhhhcccceEEEeecccce
Confidence 99999985 8999999998 8999998761 1111111222345999999997 5789999999999
Q ss_pred EEEecCCCCCceeeccCCCC
Q 003308 405 HLFAINPLGGSVNFQPTDAN 424 (832)
Q Consensus 405 hIwdl~~~g~~~~~~~H~~~ 424 (832)
+|||+........+.+|...
T Consensus 252 ~~wd~~~~~~~~~~~~~~~~ 271 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVHSQN 271 (357)
T ss_dssp EEEESSCGGGCEEECCCSSC
T ss_pred eEEECCCCcEeEEEecccee
Confidence 99999987777788887543
No 36
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.86 E-value=3e-19 Score=191.14 Aligned_cols=183 Identities=12% Similarity=0.093 Sum_probs=139.4
Q ss_pred CEEEEEECCC-----CcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCC
Q 003308 117 TVVHFYSLRS-----QSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 187 (832)
Q Consensus 117 ~tVrlWDL~T-----g~~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~ 187 (832)
++|++||+.+ +..+++++. ...|.+++|+ +++|++ +.|++|++||+.+++++.++..|...
T Consensus 40 ~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~---------- 109 (319)
T 3frx_A 40 KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD---------- 109 (319)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----------
T ss_pred ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc----------
Confidence 7899999864 345667764 6789999997 466666 67899999999999998888776321
Q ss_pred cccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccc
Q 003308 188 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 267 (832)
Q Consensus 188 ~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~ 267 (832)
+ ..+++.. ++.
T Consensus 110 -----v----~~~~~~~---------------------------~~~--------------------------------- 120 (319)
T 3frx_A 110 -----V----MSVDIDK---------------------------KAS--------------------------------- 120 (319)
T ss_dssp -----E----EEEEECT---------------------------TSC---------------------------------
T ss_pred -----E----EEEEEcC---------------------------CCC---------------------------------
Confidence 1 1122321 011
Q ss_pred cccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC------CCEEEEEEc
Q 003308 268 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS------GILLVTASV 341 (832)
Q Consensus 268 ~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPd------G~lLATaS~ 341 (832)
.++++..||+|+|||+. ++++..+.+|...|.+++|+|. +.+|++++.
T Consensus 121 -------------------------~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~ 174 (319)
T 3frx_A 121 -------------------------MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174 (319)
T ss_dssp -------------------------EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEET
T ss_pred -------------------------EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeC
Confidence 12345678899999996 4577899999999999999994 559999999
Q ss_pred CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003308 342 QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (832)
Q Consensus 342 dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H 421 (832)
||+ |++||+... .....+ .|+. ..|.+++|+|||++||+++.||+|+|||+........+..|
T Consensus 175 d~~-i~~wd~~~~--------------~~~~~~-~~h~-~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 237 (319)
T 3frx_A 175 DKM-VKAWNLNQF--------------QIEADF-IGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237 (319)
T ss_dssp TSC-EEEEETTTT--------------EEEEEE-CCCC-SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred CCE-EEEEECCcc--------------hhheee-cCCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 998 899999875 344444 3543 46999999999999999999999999999886555555543
No 37
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.6e-20 Score=195.55 Aligned_cols=249 Identities=13% Similarity=0.147 Sum_probs=165.8
Q ss_pred CcEEEEEe-cCCeEEEEeccC-CCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCc
Q 003308 18 RRVLLLGY-RSGFQVWDVEEA-DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (832)
Q Consensus 18 ~~vLl~Gy-~~G~qVWdv~~~-~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~ 95 (832)
.+.|+.|. ++.++|||+... ......+..|.++|.++++.|.. ...+|+.++.
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------~~~~l~s~~~------------- 77 (379)
T 3jrp_A 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK------------FGTILASCSY------------- 77 (379)
T ss_dssp SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG------------GCSEEEEEET-------------
T ss_pred CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC------------CCCEEEEecc-------------
Confidence 45556654 556999999742 23444556789999999997531 0135555542
Q ss_pred ccccCCCCCCCCCCCCCCCCCCEEEEEECCCCc--EEEEEe-CCCCEEEEEEcC----CEEEE-EeCCEEEEEECCCCce
Q 003308 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLEI 167 (832)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~--~V~tL~-f~s~V~sV~~S~----r~LAV-a~~~~I~vwDl~t~~~ 167 (832)
+++|++||+.+++ .+..+. +...|.++++++ ++|++ +.++.|++||+.+...
T Consensus 78 --------------------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 78 --------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp --------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred --------------------CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 1679999999997 566665 467999999974 46665 6788999999998743
Q ss_pred --EEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003308 168 --EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (832)
Q Consensus 168 --~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk 245 (832)
...+..+.. ++ ..+++..... .. .+...
T Consensus 138 ~~~~~~~~~~~---------------~v----~~~~~~~~~~-------------~~---------~~~~~--------- 167 (379)
T 3jrp_A 138 TSPIIIDAHAI---------------GV----NSASWAPATI-------------EE---------DGEHN--------- 167 (379)
T ss_dssp CCEEEEECCTT---------------CE----EEEEECCCC---------------------------------------
T ss_pred eeeEEecCCCC---------------ce----EEEEEcCccc-------------cc---------ccccc---------
Confidence 333433321 01 1233331000 00 00000
Q ss_pred ceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc----EEEEeccCC
Q 003308 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHK 321 (832)
Q Consensus 246 ~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~----~l~~~~aH~ 321 (832)
..++ + ..++.+..+|.|+|||+.+++ ++..+.+|.
T Consensus 168 -----------------------~~~~---------------~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~ 206 (379)
T 3jrp_A 168 -----------------------GTKE---------------S---RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 206 (379)
T ss_dssp -------------------------CT---------------T---CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred -----------------------CCCC---------------C---CEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc
Confidence 0000 0 123455678999999998754 567888999
Q ss_pred CCeEEEEEcCC---CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEE
Q 003308 322 SPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (832)
Q Consensus 322 ~pIs~LaFSPd---G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsg 398 (832)
.+|.+++|+|+ |.+||+++.||+ |+|||+..+.. ......+........|.+++|+||+++|+++
T Consensus 207 ~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 207 DWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQG-----------PWKKTLLKEEKFPDVLWRASWSLSGNVLALS 274 (379)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTTS-----------CCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred CcEeEEEECCCCCCCCeEEEEeCCCE-EEEEeCCCCCc-----------cceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence 99999999999 899999999998 89999987510 0111112111133459999999999999999
Q ss_pred eCCCcEEEEecCCCCC
Q 003308 399 SSRGTSHLFAINPLGG 414 (832)
Q Consensus 399 S~DgTVhIwdl~~~g~ 414 (832)
+.||+|+||++...+.
T Consensus 275 ~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 275 GGDNKVTLWKENLEGK 290 (379)
T ss_dssp ESSSSEEEEEEEETTE
T ss_pred cCCCcEEEEeCCCCCc
Confidence 9999999999986543
No 38
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.86 E-value=6.4e-20 Score=200.40 Aligned_cols=252 Identities=12% Similarity=0.116 Sum_probs=172.2
Q ss_pred cEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccc
Q 003308 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (832)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~ 98 (832)
.+++.+.++.++|||+.. +.....+..|.++|.++++.|+. .+|+.++.
T Consensus 111 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~s~---------------- 159 (420)
T 3vl1_A 111 RFILGTTEGDIKVLDSNF-NLQREIDQAHVSEITKLKFFPSG--------------EALISSSQ---------------- 159 (420)
T ss_dssp EEEEEETTSCEEEECTTS-CEEEEETTSSSSCEEEEEECTTS--------------SEEEEEET----------------
T ss_pred EEEEEECCCCEEEEeCCC-cceeeecccccCccEEEEECCCC--------------CEEEEEeC----------------
Confidence 444444556699999985 55666666899999999998742 24554442
Q ss_pred cCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEecC
Q 003308 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTN 174 (832)
Q Consensus 99 ~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~ 174 (832)
+++|++||+.+++++.++. +...|.+++|+ +++|++ +.+++|++||+.+++.+.++..+
T Consensus 160 -----------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 222 (420)
T 3vl1_A 160 -----------------DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222 (420)
T ss_dssp -----------------TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBT
T ss_pred -----------------CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecC
Confidence 2789999999999999987 47899999997 456666 56889999999999998888765
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeec
Q 003308 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (832)
Q Consensus 175 ~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~l 254 (832)
..... ++ ..+++.... ...+....
T Consensus 223 ~~~~~------------~v----~~~~~~~~~--------------------------~~~~~~~~-------------- 246 (420)
T 3vl1_A 223 ENPHD------------GV----NSIALFVGT--------------------------DRQLHEIS-------------- 246 (420)
T ss_dssp TBTTC------------CE----EEEEEEECC--------------------------CSSCGGGC--------------
T ss_pred CCCCC------------Cc----cEEEEecCC--------------------------cceeeecc--------------
Confidence 32110 11 112222100 00000000
Q ss_pred cCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCC
Q 003308 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSG 333 (832)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~-aH~~pIs~LaFSPdG 333 (832)
. ..+. +-.+.|+ | ..++.+..+|.|+|||+.+++.+..+. .|..+|.+++|+|+|
T Consensus 247 -~---~~v~--~~~~s~~---------------~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 302 (420)
T 3vl1_A 247 -T---SKKN--NLEFGTY---------------G---KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN 302 (420)
T ss_dssp -C---CCCC--TTCSSCT---------------T---EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC
T ss_pred -c---Cccc--ceEEcCC---------------C---CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC
Confidence 0 0000 0000011 1 124556788999999999998877775 588999999999999
Q ss_pred C-EEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003308 334 I-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 334 ~-lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
. +|++++.||+ |+|||+.++. ..+..+. +++...|.++.| +++++|++++.|++|+||++...
T Consensus 303 ~~~l~~g~~dg~-i~vwd~~~~~-------------~~~~~~~-~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 303 ANYIYAGYENGM-LAQWDLRSPE-------------CPVGEFL-INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TTEEEEEETTSE-EEEEETTCTT-------------SCSEEEE-ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCEEEEEeCCCe-EEEEEcCCCc-------------Cchhhhh-ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 9 9999999997 8999998751 1122332 333445888855 58899999999999999999874
Q ss_pred CC
Q 003308 413 GG 414 (832)
Q Consensus 413 g~ 414 (832)
..
T Consensus 367 ~~ 368 (420)
T 3vl1_A 367 ES 368 (420)
T ss_dssp TC
T ss_pred CC
Confidence 33
No 39
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.86 E-value=7.6e-20 Score=193.85 Aligned_cols=271 Identities=14% Similarity=0.167 Sum_probs=176.0
Q ss_pred cEEEEEec-CCeEEEEeccCCCe-eEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 19 RVLLLGYR-SGFQVWDVEEADNV-HDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 19 ~vLl~Gy~-~G~qVWdv~~~~~~-~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
..|+.|.. +.++|||+...+.. ...+..|.++|.++++.|+. .+|+.++.
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~~~-------------- 106 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG--------------SKVFTASC-------------- 106 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred eEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC--------------CEEEEEcC--------------
Confidence 56666655 45999999874433 36777899999999998743 24554442
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCEEEEEE--cC--CEEEE-EeCCEEEEEECCCCceEEEE
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRC--SS--RVVAI-CQAAQVHCFDAATLEIEYAI 171 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~--S~--r~LAV-a~~~~I~vwDl~t~~~~~tl 171 (832)
+++|++||+.+++++....+...|.+++| ++ ++|++ +.++.|++||+.+++.+.++
T Consensus 107 -------------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 167 (368)
T 3mmy_A 107 -------------------DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167 (368)
T ss_dssp -------------------TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred -------------------CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence 27899999999999998888999999999 53 45655 56899999999999988888
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003308 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (832)
Q Consensus 172 ~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi 251 (832)
..+.... .+......++.+.. +..+.-|-.+......
T Consensus 168 ~~~~~~~-------------~~~~~~~~~~~~~~---------------------------~~~i~~~~~~~~~~~~--- 204 (368)
T 3mmy_A 168 QLPERCY-------------CADVIYPMAVVATA---------------------------ERGLIVYQLENQPSEF--- 204 (368)
T ss_dssp ECSSCEE-------------EEEEETTEEEEEEG---------------------------GGCEEEEECSSSCEEE---
T ss_pred ecCCCce-------------EEEecCCeeEEEeC---------------------------CCcEEEEEeccccchh---
Confidence 7643210 11111111221110 0001001000000000
Q ss_pred eeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCC---cEEEEeccCCC------
Q 003308 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK---NVIAQFRAHKS------ 322 (832)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~---~~l~~~~aH~~------ 322 (832)
..+.... .-...+..+.+. .... ...++.+..+|.|+|||+... +.+..+++|..
T Consensus 205 ~~~~~~~--~~~~~~~~~~~~---------~~~~-----~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (368)
T 3mmy_A 205 RRIESPL--KHQHRCVAIFKD---------KQNK-----PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268 (368)
T ss_dssp EECCCSC--SSCEEEEEEEEC---------TTSC-----EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred hhccccc--cCCCceEEEccc---------CCCC-----CCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence 0000000 000000000000 0000 001456778999999999987 67788888876
Q ss_pred ------CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEE
Q 003308 323 ------PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIM 396 (832)
Q Consensus 323 ------pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LA 396 (832)
+|.+++|+|+|++||+++.||+ |+|||+.++ ..+..+. ++ ...|.+++|+|||++||
T Consensus 269 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~--------------~~~~~~~-~~-~~~v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 269 APQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDAR--------------TKLKTSE-QL-DQPISACCFNHNGNIFA 331 (368)
T ss_dssp CCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTT--------------EEEEECC-CC-SSCEEEEEECTTSSCEE
T ss_pred ccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCC--------------cEEEEec-CC-CCCceEEEECCCCCeEE
Confidence 7999999999999999999998 899999876 4555553 43 34699999999999999
Q ss_pred EEeCCCcEEEEecCCC
Q 003308 397 ISSSRGTSHLFAINPL 412 (832)
Q Consensus 397 sgS~DgTVhIwdl~~~ 412 (832)
+++.|+..+.|++-..
T Consensus 332 ~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 332 YASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEECCCSTTCGGGCCT
T ss_pred EEecccccccccccCC
Confidence 9999997777665443
No 40
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.86 E-value=3.6e-19 Score=195.83 Aligned_cols=272 Identities=11% Similarity=0.121 Sum_probs=181.2
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEeee-cCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSR-YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~-~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
..+++++.++.++|||++. +....++.. |.+.|.++++.|+. .+|+++..
T Consensus 104 ~~l~~~~~d~~v~lw~~~~-~~~~~~~~~~~~~~v~~v~~s~~~--------------~~l~~~~~-------------- 154 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADS-GSVSALAETDESTYVASVKWSHDG--------------SFLSVGLG-------------- 154 (401)
T ss_dssp TSEEEEEETTEEEEEETTT-CCEEEEEECCTTCCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CCEEEEECCCeEEEeeCCC-CcEeEeeecCCCCCEEEEEECCCC--------------CEEEEECC--------------
Confidence 5688888888899999987 556555554 78999999998742 24555542
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEE-EeCCEEEEEECCC-CceEEEEec
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAAT-LEIEYAILT 173 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~r~LAV-a~~~~I~vwDl~t-~~~~~tl~t 173 (832)
+++|++||+.+++.++++.. ...|.++.+++++|++ +.++.|++||+.+ ......+..
T Consensus 155 -------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 215 (401)
T 4aez_A 155 -------------------NGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQG 215 (401)
T ss_dssp -------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred -------------------CCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcC
Confidence 16799999999999999964 6799999999888877 5688999999994 556667766
Q ss_pred CCCccCCCCCCCCCcccceeeecc--ceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003308 174 NPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (832)
Q Consensus 174 ~~~~~~~p~~~~~~~~~~p~Alg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi 251 (832)
|... +..+++++ ++||.++.. ..|.-|-....+.+..
T Consensus 216 ~~~~------------v~~~~~~~~~~~l~s~~~d---------------------------~~v~iwd~~~~~~~~~-- 254 (401)
T 4aez_A 216 HSSE------------VCGLAWRSDGLQLASGGND---------------------------NVVQIWDARSSIPKFT-- 254 (401)
T ss_dssp CSSC------------EEEEEECTTSSEEEEEETT---------------------------SCEEEEETTCSSEEEE--
T ss_pred CCCC------------eeEEEEcCCCCEEEEEeCC---------------------------CeEEEccCCCCCccEE--
Confidence 5321 22344443 455554311 1111111111111000
Q ss_pred eeccCccccccccccccccCCCcCccccccCCCCCCCccccccccc--CCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003308 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDA--DNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (832)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~--~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaF 329 (832)
..+... .+ ..+. .++... ..++++ ..+|.|++||+.+++++..+. |..+|.+++|
T Consensus 255 -~~~~~~--~v------------~~~~-~~p~~~------~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~ 311 (401)
T 4aez_A 255 -KTNHNA--AV------------KAVA-WCPWQS------NLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIW 311 (401)
T ss_dssp -ECCCSS--CC------------CEEE-ECTTST------TEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEE
T ss_pred -ecCCcc--eE------------EEEE-ECCCCC------CEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEE
Confidence 000000 00 0000 011100 122332 378999999999999999886 5678999999
Q ss_pred cCCCCEEEEEE--cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 003308 330 DPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (832)
Q Consensus 330 SPdG~lLATaS--~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIw 407 (832)
+|+|.+|++++ .||. |+|||+..+ ....+..+ .++ ...|.+++|+||+++|++++.||+|+||
T Consensus 312 s~~~~~l~~~~g~~dg~-i~v~~~~~~------------~~~~~~~~-~~h-~~~v~~~~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 312 SPHSKEIMSTHGFPDNN-LSIWSYSSS------------GLTKQVDI-PAH-DTRVLYSALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp CSSSSEEEEEECTTTCE-EEEEEEETT------------EEEEEEEE-ECC-SSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred CCCCCeEEEEeecCCCc-EEEEecCCc------------cceeEEEe-cCC-CCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 99999999965 7887 999999775 12344444 343 3469999999999999999999999999
Q ss_pred ecCCCCCce
Q 003308 408 AINPLGGSV 416 (832)
Q Consensus 408 dl~~~g~~~ 416 (832)
++.+.....
T Consensus 377 ~~~~~~~~~ 385 (401)
T 4aez_A 377 RVYDGDHVK 385 (401)
T ss_dssp ECCC-----
T ss_pred ECCCCcccc
Confidence 998765443
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.86 E-value=6.1e-19 Score=184.92 Aligned_cols=262 Identities=15% Similarity=0.262 Sum_probs=173.7
Q ss_pred CCcEEEEEecCCeEEEEeccCCCeeEEe--e--ecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCcccc
Q 003308 17 TRRVLLLGYRSGFQVWDVEEADNVHDLV--S--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (832)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~~~~~~ell--S--~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~ 92 (832)
..++|+.|.++.++|||+........+. . .|.++|.++.+.|+. .+|++++.
T Consensus 62 ~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~---------- 117 (337)
T 1gxr_A 62 PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG--------------CTLIVGGE---------- 117 (337)
T ss_dssp SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS--------------SEEEEEES----------
T ss_pred CCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC--------------CEEEEEcC----------
Confidence 3567777777789999998744332222 2 578999999998743 24554432
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCc--EEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCc
Q 003308 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLE 166 (832)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~--~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~ 166 (832)
+++|++||+++++ .+..+.. ...|.+++++ +++|++ +.++.|++||+.+++
T Consensus 118 -----------------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 118 -----------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp -----------------------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred -----------------------CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 1789999999988 4555543 5689999997 466666 567899999999999
Q ss_pred eEEEEecCCCccCCCCCCCCCcccceeeecc--ceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccc
Q 003308 167 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (832)
Q Consensus 167 ~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ss 244 (832)
.+..+..+.. ....++++| ++|+.++. ...+..|-....
T Consensus 175 ~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~---------------------------dg~i~~~d~~~~ 215 (337)
T 1gxr_A 175 LVRQFQGHTD------------GASCIDISNDGTKLWTGGL---------------------------DNTVRSWDLREG 215 (337)
T ss_dssp EEEEECCCSS------------CEEEEEECTTSSEEEEEET---------------------------TSEEEEEETTTT
T ss_pred eeeeeecccC------------ceEEEEECCCCCEEEEEec---------------------------CCcEEEEECCCC
Confidence 8888866532 122344443 44554421 111211211111
Q ss_pred cceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCe
Q 003308 245 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPI 324 (832)
Q Consensus 245 k~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pI 324 (832)
+.+.. +.... .+ ++-.+.|+ | ..++.+..+|.|++||+.+++. ..+..|..+|
T Consensus 216 ~~~~~----~~~~~--~v--~~~~~s~~---------------~---~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v 268 (337)
T 1gxr_A 216 RQLQQ----HDFTS--QI--FSLGYCPT---------------G---EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCV 268 (337)
T ss_dssp EEEEE----EECSS--CE--EEEEECTT---------------S---SEEEEEETTSCEEEEETTSSCE-EEECCCSSCE
T ss_pred ceEee----ecCCC--ce--EEEEECCC---------------C---CEEEEEcCCCcEEEEECCCCCe-EEEcCCccce
Confidence 11110 00000 00 00001111 1 1345566789999999998875 4678999999
Q ss_pred EEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcE
Q 003308 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (832)
Q Consensus 325 s~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTV 404 (832)
.+++|+|+|++|++++.||. |++||+.++ ..+..+. ....|.+++|+||+++|++++.||+|
T Consensus 269 ~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~--------------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTGKDNL-LNAWRTPYG--------------ASIFQSK---ESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp EEEEECTTSSEEEEEETTSE-EEEEETTTC--------------CEEEEEE---CSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred eEEEECCCCCEEEEecCCCc-EEEEECCCC--------------eEEEEec---CCCcEEEEEECCCCCEEEEecCCCeE
Confidence 99999999999999999987 899999876 2333332 23459999999999999999999999
Q ss_pred EEEec
Q 003308 405 HLFAI 409 (832)
Q Consensus 405 hIwdl 409 (832)
+||++
T Consensus 331 ~iw~~ 335 (337)
T 1gxr_A 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 42
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.86 E-value=5.8e-19 Score=191.43 Aligned_cols=221 Identities=11% Similarity=0.123 Sum_probs=161.8
Q ss_pred eeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCCCCCEE
Q 003308 40 VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVV 119 (832)
Q Consensus 40 ~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tV 119 (832)
....+..|.+.|.++++.|+. ..+|+.++. +++|
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~-------------~~~l~s~~~---------------------------------dg~i 98 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTH-------------PTTVAVGSK---------------------------------GGDI 98 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSC-------------TTEEEEEEB---------------------------------TSCE
T ss_pred eEEeccCCCCCEEEEEECCCC-------------CCEEEEEcC---------------------------------CCeE
Confidence 344556789999999998742 024554442 1679
Q ss_pred EEEECCCCcEEEEEe---CCCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccce
Q 003308 120 HFYSLRSQSYVHMLK---FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (832)
Q Consensus 120 rlWDL~Tg~~V~tL~---f~s~V~sV~~S~---r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p 192 (832)
+|||+.+++....+. +...|.+++|++ ++|++ +.++.|++||+.+ +.+..+..+... ..+
T Consensus 99 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~------------~~~ 165 (383)
T 3ei3_B 99 ILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSW------------DYW 165 (383)
T ss_dssp EEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCS------------SCC
T ss_pred EEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCC------------CCC
Confidence 999999999988886 577999999975 56666 5688999999986 555555443210 000
Q ss_pred eeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCC
Q 003308 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (832)
Q Consensus 193 ~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~ 272 (832)
+ ..+++.. ++.
T Consensus 166 v----~~~~~~~---------------------------~~~-------------------------------------- 176 (383)
T 3ei3_B 166 Y----CCVDVSV---------------------------SRQ-------------------------------------- 176 (383)
T ss_dssp E----EEEEEET---------------------------TTT--------------------------------------
T ss_pred e----EEEEECC---------------------------CCC--------------------------------------
Confidence 1 1223321 011
Q ss_pred CcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEEcCCCEEEEEeC
Q 003308 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKI 351 (832)
Q Consensus 273 ~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~-lLATaS~dGt~I~Iwdi 351 (832)
.++++..+|.|++||+ +++++..+.+|..+|.+|+|+|+|+ +|++++.||+ |+|||+
T Consensus 177 --------------------~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-i~iwd~ 234 (383)
T 3ei3_B 177 --------------------MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT-VKLWDL 234 (383)
T ss_dssp --------------------EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE-EEEEEG
T ss_pred --------------------EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE-EEEEeC
Confidence 1233456789999999 5778899999999999999999999 9999999987 999999
Q ss_pred CCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCCCCceeeccCCC
Q 003308 352 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (832)
Q Consensus 352 ~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSp-Dg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~~ 423 (832)
.+... ....+..+ ++ ...|.+++|+| |+++|++++.|++|+|||+........+..|..
T Consensus 235 ~~~~~----------~~~~~~~~--~~-~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 235 RNIKD----------KNSYIAEM--PH-EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp GGCCS----------TTCEEEEE--EC-SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred CCCCc----------ccceEEEe--cC-CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence 87410 01233344 33 34699999999 999999999999999999998887778877743
No 43
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.86 E-value=6.4e-20 Score=197.68 Aligned_cols=242 Identities=13% Similarity=0.131 Sum_probs=166.8
Q ss_pred cCCeEEEEeccCCCeeEEeeecCCCEEEEEEec-CCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccCCCCC
Q 003308 26 RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLP-RPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSA 104 (832)
Q Consensus 26 ~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp-~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~ 104 (832)
+..++||+++. +....++..|.++|.++++.| ++ .+|+.++.
T Consensus 22 ~~~~~v~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~--------------~~l~~~~~---------------------- 64 (408)
T 4a11_B 22 ESTRRVLGLEL-NKDRDVERIHGGGINTLDIEPVEG--------------RYMLSGGS---------------------- 64 (408)
T ss_dssp HHHHHHHTEEE-CTTEEECCCCSSCEEEEEECTTTC--------------CEEEEEET----------------------
T ss_pred cCcceeecccc-CcceeeeeccCCcEEEEEEecCCC--------------CEEEEEcC----------------------
Confidence 44578888886 567778888999999999987 43 25655542
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCcEEEEEe--------------CCCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCc
Q 003308 105 NYHDLGNGSSVPTVVHFYSLRSQSYVHMLK--------------FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLE 166 (832)
Q Consensus 105 ~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~--------------f~s~V~sV~~S~---r~LAV-a~~~~I~vwDl~t~~ 166 (832)
+++|++||+.+++....+. +...|.+++|++ ++|++ +.++.|++||+.+++
T Consensus 65 -----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 133 (408)
T 4a11_B 65 -----------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ 133 (408)
T ss_dssp -----------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE
T ss_pred -----------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc
Confidence 1679999999987766665 677999999974 45665 568999999999998
Q ss_pred eEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003308 167 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (832)
Q Consensus 167 ~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~ 246 (832)
....+..... + ..+++... ..++.
T Consensus 134 ~~~~~~~~~~----------------~----~~~~~~~~------------------------~~~~~------------ 157 (408)
T 4a11_B 134 TADVFNFEET----------------V----YSHHMSPV------------------------STKHC------------ 157 (408)
T ss_dssp EEEEEECSSC----------------E----EEEEECSS------------------------CSSCC------------
T ss_pred cceeccCCCc----------------e----eeeEeecC------------------------CCCCc------------
Confidence 7776642110 0 01122110 00000
Q ss_pred eeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEE
Q 003308 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA 326 (832)
Q Consensus 247 lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~ 326 (832)
.++.+..+|.|++||+.+++++..+.+|..+|.+
T Consensus 158 ----------------------------------------------~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 158 ----------------------------------------------LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA 191 (408)
T ss_dssp ----------------------------------------------EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred ----------------------------------------------EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence 1223456789999999999999999999999999
Q ss_pred EEEcCCCC-EEEEEEcCCCEEEEEeCCCCCCCCCCccCCCC-ceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcE
Q 003308 327 LCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGT-SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (832)
Q Consensus 327 LaFSPdG~-lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~-~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTV 404 (832)
++|+|+|. +|++++.||+ |++||+............... ....+.....++ ...|.+++|+||+++|++++.||+|
T Consensus 192 ~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i 269 (408)
T 4a11_B 192 VSWSPRYDYILATASADSR-VKLWDVRRASGCLITLDQHNGKKSQAVESANTAH-NGKVNGLCFTSDGLHLLTVGTDNRM 269 (408)
T ss_dssp EEECSSCTTEEEEEETTSC-EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC-SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEECCCCCcEEEEEcCCCc-EEEEECCCCCcccccccccccccceeeccccccc-cCceeEEEEcCCCCEEEEecCCCeE
Confidence 99999999 6999999998 899999875100000000000 000000000122 3459999999999999999999999
Q ss_pred EEEecCCCCCceeec
Q 003308 405 HLFAINPLGGSVNFQ 419 (832)
Q Consensus 405 hIwdl~~~g~~~~~~ 419 (832)
+|||+........+.
T Consensus 270 ~vwd~~~~~~~~~~~ 284 (408)
T 4a11_B 270 RLWNSSNGENTLVNY 284 (408)
T ss_dssp EEEETTTCCBCCCCC
T ss_pred EEEECCCCccceecc
Confidence 999998865544443
No 44
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8e-20 Score=197.58 Aligned_cols=275 Identities=11% Similarity=0.131 Sum_probs=178.4
Q ss_pred CcEEEEEec-CCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLGYR-SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~Gy~-~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
.++|+.|.. +.++|||. .+.....+..|.++|.++.+.|+. .+|+.++.
T Consensus 120 ~~~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~-------------- 169 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKDG--------------THIISMDV-------------- 169 (425)
T ss_dssp SSEEEEEETTSCEEEEET--TSCEEEEECCCCSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CCEEEEEeCCCeEEEEeC--CCCeeeeccCCCccEEEEEECCCC--------------CEEEEEec--------------
Confidence 455566554 45999993 356666777899999999998743 24554442
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCCC-C---------------EEEEEEc--CCEEEEEeCCEEE
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS-P---------------IYSVRCS--SRVVAICQAAQVH 158 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s-~---------------V~sV~~S--~r~LAVa~~~~I~ 158 (832)
+++|++||+++++.+..+.... . |.++.++ ..+++.+.++.|+
T Consensus 170 -------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 230 (425)
T 1r5m_A 170 -------------------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIF 230 (425)
T ss_dssp -------------------TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEE
T ss_pred -------------------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEE
Confidence 1679999999999999998743 3 7888886 3444456788999
Q ss_pred EEECCCCceEEEEecCCCccCCCCCCCCCcccceeeecc--ceEEeeCCCceecCCCccCCcccccccccccccCCCcce
Q 003308 159 CFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRV 236 (832)
Q Consensus 159 vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V 236 (832)
+||+.+.+.+..+..+... ...+++++ ++|+.++.. ..+
T Consensus 231 ~~d~~~~~~~~~~~~~~~~------------i~~~~~~~~~~~l~~~~~d---------------------------~~i 271 (425)
T 1r5m_A 231 VYQITEKTPTGKLIGHHGP------------ISVLEFNDTNKLLLSASDD---------------------------GTL 271 (425)
T ss_dssp EEETTCSSCSEEECCCSSC------------EEEEEEETTTTEEEEEETT---------------------------SCE
T ss_pred EEEcCCCceeeeeccCCCc------------eEEEEECCCCCEEEEEcCC---------------------------CEE
Confidence 9999999888887665321 22344443 455554311 111
Q ss_pred eeeecccccceeceeeeccCccccccccccccccCCCcCcccc--ccCCCCCCCcccccccccCCCCeEEEEECCCCcEE
Q 003308 237 AHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQS--AIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI 314 (832)
Q Consensus 237 ~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~s--a~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l 314 (832)
.-|-....+.+.. + .+.. ..+.. ..+ ++ .++.+..+|.|+|||+.+++++
T Consensus 272 ~i~d~~~~~~~~~-~--~~~~-----------------~~i~~~~~~~----~~----~l~~~~~d~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 272 RIWHGGNGNSQNC-F--YGHS-----------------QSIVSASWVG----DD----KVISCSMDGSVRLWSLKQNTLL 323 (425)
T ss_dssp EEECSSSBSCSEE-E--CCCS-----------------SCEEEEEEET----TT----EEEEEETTSEEEEEETTTTEEE
T ss_pred EEEECCCCccceE-e--cCCC-----------------ccEEEEEECC----CC----EEEEEeCCCcEEEEECCCCcEe
Confidence 1111111000000 0 0000 00000 011 11 3456678999999999999999
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCC------CceeEEEEEeccCccc-cEEEEE
Q 003308 315 AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAG------TSYVHLYRLQRGLTNA-VIQDIS 387 (832)
Q Consensus 315 ~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~------~~~~~l~~l~rG~t~a-~I~~Ia 387 (832)
..+..|..+|.+++|+|+|++||+++.||. |+|||+.++........+.. .....+..+ +++... .|.+++
T Consensus 324 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 401 (425)
T 1r5m_A 324 ALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-QSSQDNDYIFDLS 401 (425)
T ss_dssp EEEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC--------------CEECCEEEEE-CCTTCCCCEEEEE
T ss_pred EecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccchhhhhh-cCcccCCceEEEE
Confidence 999999999999999999999999999998 89999976510000000000 000134455 444333 699999
Q ss_pred EccCCCEEEEEeCCCcEEEEecC
Q 003308 388 FSDDSNWIMISSSRGTSHLFAIN 410 (832)
Q Consensus 388 FSpDg~~LAsgS~DgTVhIwdl~ 410 (832)
|+||+++||+++.||+|+||++.
T Consensus 402 ~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 402 WNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECTTSSEEEEEESSSCCEEEECC
T ss_pred ccCCCceEEEEecCceEEEEeec
Confidence 99999999999999999999985
No 45
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.86 E-value=1.2e-19 Score=189.29 Aligned_cols=265 Identities=14% Similarity=0.144 Sum_probs=166.9
Q ss_pred CcEEEEEec-CCeEEEEeccCCC---eeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccC
Q 003308 18 RRVLLLGYR-SGFQVWDVEEADN---VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (832)
Q Consensus 18 ~~vLl~Gy~-~G~qVWdv~~~~~---~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~D 93 (832)
...|+.|.. +.++|||+..... ....+..|.++|.++++.|.. ...+|+.++.
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------d~~~l~s~~~----------- 79 (351)
T 3f3f_A 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE------------YGRIIASASY----------- 79 (351)
T ss_dssp SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG------------GCSEEEEEET-----------
T ss_pred CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC------------CCCEEEEEcC-----------
Confidence 445555554 5599999986432 333445689999999998721 0124554442
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCEEEEEECCCC---------cEEEEEeC-CCCEEEEEEcC----CEEEE-EeCCEEE
Q 003308 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQ---------SYVHMLKF-RSPIYSVRCSS----RVVAI-CQAAQVH 158 (832)
Q Consensus 94 g~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg---------~~V~tL~f-~s~V~sV~~S~----r~LAV-a~~~~I~ 158 (832)
+++|++||++++ +.+..+.. ...|.+++|++ ++|++ +.++.|+
T Consensus 80 ----------------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 137 (351)
T 3f3f_A 80 ----------------------DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILR 137 (351)
T ss_dssp ----------------------TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEE
T ss_pred ----------------------CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEE
Confidence 167999999987 56777754 67999999974 46665 6788999
Q ss_pred EEECCCCceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceee
Q 003308 159 CFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAH 238 (832)
Q Consensus 159 vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~ 238 (832)
+||+.+++.+..+....... .+ ++. +. .....+..
T Consensus 138 iwd~~~~~~~~~~~~~~~~~-------------~~-------~~~-------------~~------------~~~~~~~~ 172 (351)
T 3f3f_A 138 LYDALEPSDLRSWTLTSEMK-------------VL-------SIP-------------PA------------NHLQSDFC 172 (351)
T ss_dssp EEECSSTTCTTCCEEEEEEE-------------SC-------SCC-------------CS------------SCSCCCEE
T ss_pred EecCCChHHhcccccccccc-------------cc-------ccc-------------cC------------CcccceeE
Confidence 99999876543221100000 00 000 00 00000000
Q ss_pred eecccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcE--EEE
Q 003308 239 YAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV--IAQ 316 (832)
Q Consensus 239 ~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~--l~~ 316 (832)
+ ...|+.. -...++.+..++.+.+|+...++. +..
T Consensus 173 ------------~----------------~~~p~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (351)
T 3f3f_A 173 ------------L----------------SWCPSRF---------------SPEKLAVSALEQAIIYQRGKDGKLHVAAK 209 (351)
T ss_dssp ------------E----------------EECCCSS---------------SCCEEEEEETTEEEEEEECTTSCEEEEEE
T ss_pred ------------E----------------EeccCCC---------------CCcEEEEecCCCcEEEEccCCCceeeeee
Confidence 0 0001000 001234456678888888887765 788
Q ss_pred eccCCCCeEEEEEcCCC----CEEEEEEcCCCEEEEEeCCCCCCCCCC-------------------ccC----------
Q 003308 317 FRAHKSPISALCFDPSG----ILLVTASVQGHNINIFKIIPGILGTSS-------------------ACD---------- 363 (832)
Q Consensus 317 ~~aH~~pIs~LaFSPdG----~lLATaS~dGt~I~Iwdi~t~~~~~~s-------------------~~~---------- 363 (832)
+.+|..+|.+|+|+|+| ++||+++.||+ |+|||+..+...... ..+
T Consensus 210 ~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (351)
T 3f3f_A 210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKA 288 (351)
T ss_dssp CCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC-------------------------------------
T ss_pred cCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceee
Confidence 88999999999999999 89999999998 899999764100000 000
Q ss_pred ---CCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003308 364 ---AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 364 ---~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~ 418 (832)
.......+..+ +++. ..|.+++|+||+++||+++.||+|+||++...+....+
T Consensus 289 ~~~~~~~~~~~~~~-~~h~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 289 ELQSNLQVELLSEH-DDHN-GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp --CCSEEEEEEEEE-CTTS-SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred eecccccccEEEEE-eccc-ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 00011333444 4543 45999999999999999999999999999886654444
No 46
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.86 E-value=8.4e-19 Score=184.90 Aligned_cols=244 Identities=11% Similarity=0.158 Sum_probs=161.5
Q ss_pred CcEEE-EEecCCeEEEEeccCCC----eeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCcccc
Q 003308 18 RRVLL-LGYRSGFQVWDVEEADN----VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (832)
Q Consensus 18 ~~vLl-~Gy~~G~qVWdv~~~~~----~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~ 92 (832)
..+|+ .|.++.++|||+..... ....+..|.++|.++.+.|+. .+|+.++.
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg--------------~~l~s~~~---------- 106 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG--------------QFALSGSW---------- 106 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS--------------SEEEEEET----------
T ss_pred CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC--------------CEEEEEcc----------
Confidence 34554 55667799999976322 233455689999999998753 24543332
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceE
Q 003308 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE 168 (832)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~ 168 (832)
++.|++|+............ ...+..+.++ .+.|++ +.++.+++||+......
T Consensus 107 -----------------------d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~ 163 (340)
T 4aow_A 107 -----------------------DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 163 (340)
T ss_dssp -----------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred -----------------------cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE
Confidence 27899999999998888776 4566777775 355555 67889999998765432
Q ss_pred EEEe-cCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccce
Q 003308 169 YAIL-TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (832)
Q Consensus 169 ~tl~-t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~l 247 (832)
.... .+. ..+ ..++++.. +.
T Consensus 164 ~~~~~~~~---------------~~v----~~~~~~~~---------------------------~~------------- 184 (340)
T 4aow_A 164 TVQDESHS---------------EWV----SCVRFSPN---------------------------SS------------- 184 (340)
T ss_dssp EECSSSCS---------------SCE----EEEEECSC---------------------------SS-------------
T ss_pred EEEecccc---------------Ccc----cceEEccC---------------------------CC-------------
Confidence 2111 110 001 11122110 00
Q ss_pred eceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEE
Q 003308 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISAL 327 (832)
Q Consensus 248 asGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~L 327 (832)
...++++..++.|++||+.+++++..+.+|..+|.+|
T Consensus 185 -------------------------------------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~ 221 (340)
T 4aow_A 185 -------------------------------------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221 (340)
T ss_dssp -------------------------------------------SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred -------------------------------------------CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEE
Confidence 0012234567899999999999999999999999999
Q ss_pred EEcCCCCEEEEEEcCCCEEEEEeCCCCCC-----CCCC------------ccCCCCceeEEEEEe---------------
Q 003308 328 CFDPSGILLVTASVQGHNINIFKIIPGIL-----GTSS------------ACDAGTSYVHLYRLQ--------------- 375 (832)
Q Consensus 328 aFSPdG~lLATaS~dGt~I~Iwdi~t~~~-----~~~s------------~~~~~~~~~~l~~l~--------------- 375 (832)
+|+|+|++||+|+.||+ |+|||+.+... .... ..........+|.++
T Consensus 222 ~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 300 (340)
T 4aow_A 222 TVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIST 300 (340)
T ss_dssp EECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC----
T ss_pred EECCCCCEEEEEeCCCe-EEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceee
Confidence 99999999999999997 89999987521 0000 000001112223221
Q ss_pred --ccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003308 376 --RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 376 --rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
.++ ...|.+++|+|||++||+|+.||+|+||+++++
T Consensus 301 ~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 301 SSKAE-PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ---CC-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred eccCC-CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 122 235999999999999999999999999999875
No 47
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.85 E-value=5.2e-20 Score=196.84 Aligned_cols=251 Identities=16% Similarity=0.183 Sum_probs=160.9
Q ss_pred CcEEEEEecCCeEEEEeccCCC-eeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADN-VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~-~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
+.++..+.++.++|||+..... ....+..|.++|.++++.|.. ...+|+.++.
T Consensus 26 ~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~------------~~~~l~s~s~-------------- 79 (316)
T 3bg1_A 26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM------------YGNILASCSY-------------- 79 (316)
T ss_dssp CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG------------GSSCEEEEET--------------
T ss_pred CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC------------CCCEEEEEEC--------------
Confidence 3444455566699999986321 234456799999999997521 0124554442
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCc--EEEEEe-CCCCEEEEEEcC----CEEEE-EeCCEEEEEECCCCceE
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLEIE 168 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~--~V~tL~-f~s~V~sV~~S~----r~LAV-a~~~~I~vwDl~t~~~~ 168 (832)
+++|+|||+++++ .+.++. +...|.+|+|++ .+||+ +.+++|++||+.+....
T Consensus 80 -------------------D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 80 -------------------DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW 140 (316)
T ss_dssp -------------------TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred -------------------CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence 2779999999884 566665 467899999974 36666 56889999999876422
Q ss_pred EEE---ecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003308 169 YAI---LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (832)
Q Consensus 169 ~tl---~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk 245 (832)
... ..|.. ... .++++... . .+..+.+
T Consensus 141 ~~~~~~~~h~~------------~v~-------~~~~~~~~-------------~-----------~~~~~~~------- 170 (316)
T 3bg1_A 141 EVKKINNAHTI------------GCN-------AVSWAPAV-------------V-----------PGSLIDH------- 170 (316)
T ss_dssp EECCBTTSSSS------------CBC-------CCEECCCC-------------C-----------C-------------
T ss_pred ceeeeeccccC------------Ccc-------eEEEcccc-------------C-----------Ccccccc-------
Confidence 111 11110 011 12332110 0 0000000
Q ss_pred ceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCC---cEEEEeccCCC
Q 003308 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK---NVIAQFRAHKS 322 (832)
Q Consensus 246 ~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~---~~l~~~~aH~~ 322 (832)
+.+. .+. . ...++++..||.|+|||+... +++..|++|..
T Consensus 171 -------------------------~~~~------~~~---~---~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~ 213 (316)
T 3bg1_A 171 -------------------------PSGQ------KPN---Y---IKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD 213 (316)
T ss_dssp -------------------------CCSC------CCC---C---CCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred -------------------------cccc------Ccc---c---cceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence 0000 000 0 013566778999999999765 57788999999
Q ss_pred CeEEEEEcCCC----CEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEE
Q 003308 323 PISALCFDPSG----ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (832)
Q Consensus 323 pIs~LaFSPdG----~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsg 398 (832)
+|.+++|+|++ .+|||++.||+ |+|||+.+...+. .....+ .++ ...|++++|+||+++||++
T Consensus 214 ~V~~v~~sp~~~~~~~~las~s~D~~-v~iw~~~~~~~~~-------~~~~~~----~~~-~~~v~~v~~sp~g~~las~ 280 (316)
T 3bg1_A 214 WVRDVAWAPSIGLPTSTIASCSQDGR-VFIWTCDDASSNT-------WSPKLL----HKF-NDVVWHVSWSITANILAVS 280 (316)
T ss_dssp CEEEEECCCCSSCSCCEEEEEETTCE-EEEEECSSTTCCC-------CBCCEE----EEC-SSCEEEEEECTTTCCEEEE
T ss_pred ceEEEEecCCCCCCCceEEEEcCCCe-EEEEEccCccccc-------hhhhhh----hcC-CCcEEEEEEcCCCCEEEEE
Confidence 99999999997 89999999997 8999987631000 001112 122 3469999999999999999
Q ss_pred eCCCcEEEEecCCCC
Q 003308 399 SSRGTSHLFAINPLG 413 (832)
Q Consensus 399 S~DgTVhIwdl~~~g 413 (832)
+.|++|+||+....+
T Consensus 281 ~~D~~v~lw~~~~~g 295 (316)
T 3bg1_A 281 GGDNKVTLWKESVDG 295 (316)
T ss_dssp ESSSCEEEEEECTTS
T ss_pred cCCCeEEEEEECCCC
Confidence 999999999987544
No 48
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.85 E-value=3e-19 Score=192.40 Aligned_cols=248 Identities=14% Similarity=0.161 Sum_probs=167.3
Q ss_pred CcEEEEEe-cCCeEEEEeccCCCeeEEe------------eecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCC
Q 003308 18 RRVLLLGY-RSGFQVWDVEEADNVHDLV------------SRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGS 84 (832)
Q Consensus 18 ~~vLl~Gy-~~G~qVWdv~~~~~~~ell------------S~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~ 84 (832)
...|+.|. ++.++|||+........+. ..|.++|.++++.|.. ..+|+.++.
T Consensus 56 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~l~s~~~-- 120 (408)
T 4a11_B 56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD-------------TGMFTSSSF-- 120 (408)
T ss_dssp CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC-------------TTCEEEEET--
T ss_pred CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC-------------CcEEEEEeC--
Confidence 45555554 5559999998743332222 1388899999998731 113444432
Q ss_pred CccCccccCCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcC-----CEEEE-EeCCEEE
Q 003308 85 RSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSS-----RVVAI-CQAAQVH 158 (832)
Q Consensus 85 ~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~-----r~LAV-a~~~~I~ 158 (832)
+++|++||+.+++.+..+.+...+..+.+++ .++++ +.++.|+
T Consensus 121 -------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (408)
T 4a11_B 121 -------------------------------DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169 (408)
T ss_dssp -------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred -------------------------------CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence 2789999999999999999999999999963 25665 6788999
Q ss_pred EEECCCCceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceee
Q 003308 159 CFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAH 238 (832)
Q Consensus 159 vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~ 238 (832)
+||+.+++.+.++..+.. ++ .-|++.. ++..
T Consensus 170 ~~d~~~~~~~~~~~~~~~---------------~v----~~~~~~~---------------------------~~~~--- 200 (408)
T 4a11_B 170 LCDLKSGSCSHILQGHRQ---------------EI----LAVSWSP---------------------------RYDY--- 200 (408)
T ss_dssp EEESSSSCCCEEECCCCS---------------CE----EEEEECS---------------------------SCTT---
T ss_pred EEeCCCcceeeeecCCCC---------------cE----EEEEECC---------------------------CCCc---
Confidence 999999988877765521 11 1123321 0110
Q ss_pred eecccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc-EEEEe
Q 003308 239 YAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-VIAQF 317 (832)
Q Consensus 239 ~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~-~l~~~ 317 (832)
.++++..+|.|+|||+.++. ++..+
T Consensus 201 ------------------------------------------------------ll~~~~~dg~i~i~d~~~~~~~~~~~ 226 (408)
T 4a11_B 201 ------------------------------------------------------ILATASADSRVKLWDVRRASGCLITL 226 (408)
T ss_dssp ------------------------------------------------------EEEEEETTSCEEEEETTCSSCCSEEC
T ss_pred ------------------------------------------------------EEEEEcCCCcEEEEECCCCCcccccc
Confidence 02234567889999998765 44454
Q ss_pred ---------------ccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCc---------------------
Q 003308 318 ---------------RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA--------------------- 361 (832)
Q Consensus 318 ---------------~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~--------------------- 361 (832)
.+|..+|.+++|+|+|++|++++.||. |++||+.++.......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (408)
T 4a11_B 227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSS 305 (408)
T ss_dssp CTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSS
T ss_pred cccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-EEEEECCCCccceeccccccccccccceeEEecCCCc
Confidence 678999999999999999999999998 8999998752100000
Q ss_pred ---cCCC---------CceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCcee
Q 003308 362 ---CDAG---------TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 417 (832)
Q Consensus 362 ---~~~~---------~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~ 417 (832)
.... .....+..+ .++. ..|.+++|+||+++|++++.||+|+||++..+.....
T Consensus 306 ~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 306 EFVFVPYGSTIAVYTVYSGEQITML-KGHY-KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp CEEEEEETTEEEEEETTTCCEEEEE-CCCS-SCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred eEEEEecCCEEEEEECcCCcceeee-ccCC-CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 0000 011223333 3433 4599999999999999999999999999988654433
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.85 E-value=1e-19 Score=196.94 Aligned_cols=109 Identities=17% Similarity=0.287 Sum_probs=92.0
Q ss_pred cccCCCCeEEEEECCCCcEEEEecc---C---CCCeEEEEEcCCCCEEEEEEcC---CCEEEEEeCCCCCCCCCCccCCC
Q 003308 295 PDADNVGMVIVRDIVSKNVIAQFRA---H---KSPISALCFDPSGILLVTASVQ---GHNINIFKIIPGILGTSSACDAG 365 (832)
Q Consensus 295 ~s~~~~G~V~IwDl~s~~~l~~~~a---H---~~pIs~LaFSPdG~lLATaS~d---Gt~I~Iwdi~t~~~~~~s~~~~~ 365 (832)
+.+..+|.|+|||+.+++++..+.. | ..+|.+++|+|+|++|++++.| |. |+|||+.++
T Consensus 201 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~----------- 268 (397)
T 1sq9_A 201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC-ITLYETEFG----------- 268 (397)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE-EEEEETTTC-----------
T ss_pred EEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCce-EEEEECCCC-----------
Confidence 3456789999999999999999999 9 9999999999999999999999 87 999999876
Q ss_pred CceeEEEEEeccC------------ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003308 366 TSYVHLYRLQRGL------------TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (832)
Q Consensus 366 ~~~~~l~~l~rG~------------t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~ 419 (832)
..+..+. +. +...|.+++|+||+++|++++.||+|+|||+........+.
T Consensus 269 ---~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 269 ---ERIGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp ---CEEEEEC-BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ---cccceec-cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 3444442 30 23459999999999999999999999999998876666666
No 50
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.4e-19 Score=194.78 Aligned_cols=231 Identities=11% Similarity=0.164 Sum_probs=151.9
Q ss_pred CcEEEE-EecCCeEEEEeccC------CCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCcc
Q 003308 18 RRVLLL-GYRSGFQVWDVEEA------DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTK 90 (832)
Q Consensus 18 ~~vLl~-Gy~~G~qVWdv~~~------~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~ 90 (832)
..+|+. +.++.++|||+... ......+..|.++|.++++.|+. .+||.++.
T Consensus 70 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g--------------~~las~s~-------- 127 (330)
T 2hes_X 70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG--------------YYLATCSR-------- 127 (330)
T ss_dssp SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS--------------CEEEEEET--------
T ss_pred CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC--------------CEEEEEeC--------
Confidence 444544 55667999999532 12344566789999999998753 24555542
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCCCCEEEEEECCC----CcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEEC
Q 003308 91 VQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRS----QSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDA 162 (832)
Q Consensus 91 ~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~T----g~~V~tL~-f~s~V~sV~~S--~r~LAV-a~~~~I~vwDl 162 (832)
+++|++||++. .+++.++. +...|.+|+|+ +++|++ +.|++|++||+
T Consensus 128 -------------------------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~ 182 (330)
T 2hes_X 128 -------------------------DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182 (330)
T ss_dssp -------------------------TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEE
T ss_pred -------------------------CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 27799999943 35677776 46789999997 467776 56889999998
Q ss_pred CCC--ceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeee
Q 003308 163 ATL--EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYA 240 (832)
Q Consensus 163 ~t~--~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A 240 (832)
.+. +++.++..|.. ++ ..++|..+. .+.
T Consensus 183 ~~~~~~~~~~~~~h~~---------------~v----~~~~~~~~~-------------------------~~~------ 212 (330)
T 2hes_X 183 YDDDWECVAVLNGHEG---------------TV----WSSDFDKTE-------------------------GVF------ 212 (330)
T ss_dssp ETTEEEEEEEECCCSS---------------CE----EEEEECCSS-------------------------SSC------
T ss_pred CCCCeeEEEEccCCCC---------------cE----EEEEecCCC-------------------------Cee------
Confidence 776 55666655521 11 112332100 000
Q ss_pred cccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCC--------c
Q 003308 241 KESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--------N 312 (832)
Q Consensus 241 ~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~--------~ 312 (832)
.++++..||+|+|||+.++ .
T Consensus 213 ----------------------------------------------------~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 213 ----------------------------------------------------RLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ----------------------------------------------------EEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ----------------------------------------------------EEEEEeCCCeEEEEEecCCCccccceeE
Confidence 1234567899999998764 4
Q ss_pred EEEEecc-CCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEcc-
Q 003308 313 VIAQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD- 390 (832)
Q Consensus 313 ~l~~~~a-H~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSp- 390 (832)
++..+.. |..+|.+++|++++ +||+++.||+ |+|||..++ ....+.....++....|.+++|+|
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~------------~~~~~~~~~~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDG------------EWKVFAKRALCHGVYEINVVKWLEL 306 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETT------------EEEEEEEESCTTTTSCEEEEEEC--
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCC------------ceEEEeccccccccceEEEEEEecC
Confidence 5566665 99999999999776 7999999998 899998764 112233333455433699999999
Q ss_pred -CCCEEEEEeCCCcEEEEecCC
Q 003308 391 -DSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 391 -Dg~~LAsgS~DgTVhIwdl~~ 411 (832)
|+++||+++.||+|+||+++.
T Consensus 307 ~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 307 NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ---CCEEEEETTSEEEEEEC--
T ss_pred CCceEEEEecCCCcEEEEEecc
Confidence 799999999999999999865
No 51
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3e-19 Score=193.09 Aligned_cols=247 Identities=17% Similarity=0.194 Sum_probs=168.4
Q ss_pred EEEEEe-cCCeEEEEe----ccCCC------eeEEeee----------cCCCEEEEEEecCCCcccccCCcccccCCEEE
Q 003308 20 VLLLGY-RSGFQVWDV----EEADN------VHDLVSR----------YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLV 78 (832)
Q Consensus 20 vLl~Gy-~~G~qVWdv----~~~~~------~~ellS~----------~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLa 78 (832)
+|+.|. ++.++|||+ .. +. ....+.. |.+.|.++++.|+. .+|+
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--------------~~l~ 124 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQE-GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG--------------NSIV 124 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS--------------SEEE
T ss_pred EEEEecCCceEEEEEEecccCC-ccccccccccccccccccccccccCCCCceEEEEEcCCC--------------CEEE
Confidence 555555 455999999 65 33 2233333 57799999998743 2455
Q ss_pred EEeCCCCccCccccCCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeC
Q 003308 79 FCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQA 154 (832)
Q Consensus 79 vv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~r~LAV-a~~ 154 (832)
+++. +++|++|| .+++.+..+.. ...|.+++|+ .+.|++ +.+
T Consensus 125 ~~~~---------------------------------dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (425)
T 1r5m_A 125 TGVE---------------------------------NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE 170 (425)
T ss_dssp EEET---------------------------------TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETT
T ss_pred EEeC---------------------------------CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecC
Confidence 4442 16799999 78888888874 6799999997 456665 568
Q ss_pred CEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCc
Q 003308 155 AQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS 234 (832)
Q Consensus 155 ~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~ 234 (832)
+.|++||+.+++.+..+..+..... .+. ...... .+.
T Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~~~------------~~~----~~~~~~---------------------------~~~ 207 (425)
T 1r5m_A 171 NVTILWNVISGTVMQHFELKETGGS------------SIN----AENHSG---------------------------DGS 207 (425)
T ss_dssp CCEEEEETTTTEEEEEECCC----------------------------------------------------------CC
T ss_pred CeEEEEECCCCcEEEEeeccccCcc------------cee----eccccC---------------------------Ccc
Confidence 8999999999988877755421100 000 000000 000
Q ss_pred ceeeeecccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEE
Q 003308 235 RVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI 314 (832)
Q Consensus 235 ~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l 314 (832)
.+...+. .+ .+.++.+..+|.|++||+.+++++
T Consensus 208 ~~~~~~~----------------------------~~-------------------~~~~~~~~~~g~i~~~d~~~~~~~ 240 (425)
T 1r5m_A 208 LGVDVEW----------------------------VD-------------------DDKFVIPGPKGAIFVYQITEKTPT 240 (425)
T ss_dssp CBSCCEE----------------------------EE-------------------TTEEEEECGGGCEEEEETTCSSCS
T ss_pred eeeEEEE----------------------------cC-------------------CCEEEEEcCCCeEEEEEcCCCcee
Confidence 0000000 00 012344567889999999999999
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCE
Q 003308 315 AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 394 (832)
Q Consensus 315 ~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~ 394 (832)
..+..|..+|.+++|+|+|++|++++.||. |+|||+..+ ..+..+ .++ ...|.+++|+||+ +
T Consensus 241 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~--------------~~~~~~-~~~-~~~i~~~~~~~~~-~ 302 (425)
T 1r5m_A 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGT-LRIWHGGNG--------------NSQNCF-YGH-SQSIVSASWVGDD-K 302 (425)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEECSSSB--------------SCSEEE-CCC-SSCEEEEEEETTT-E
T ss_pred eeeccCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCCC--------------ccceEe-cCC-CccEEEEEECCCC-E
Confidence 999999999999999999999999999998 899999875 222233 233 3469999999999 9
Q ss_pred EEEEeCCCcEEEEecCCCCCceeeccCCC
Q 003308 395 IMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (832)
Q Consensus 395 LAsgS~DgTVhIwdl~~~g~~~~~~~H~~ 423 (832)
|++++.|++|+|||+........+..|..
T Consensus 303 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 331 (425)
T 1r5m_A 303 VISCSMDGSVRLWSLKQNTLLALSIVDGV 331 (425)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECTTC
T ss_pred EEEEeCCCcEEEEECCCCcEeEecccCCc
Confidence 99999999999999988766666776643
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.85 E-value=3.6e-19 Score=197.93 Aligned_cols=294 Identities=15% Similarity=0.203 Sum_probs=187.5
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCccc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~ 97 (832)
+.++..+.++.++|||+.. ++....+..|.++|.++.+.+ .+|+.++.
T Consensus 130 ~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~----------------~~l~s~~~--------------- 177 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMRD----------------NIIISGST--------------- 177 (445)
T ss_dssp TEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEET----------------TEEEEEET---------------
T ss_pred CEEEEEECCCcEEEEECCC-CcEEEEEcCCCCCEEEEEecC----------------CEEEEEeC---------------
Confidence 3445555566699999986 566666778999999988752 14544432
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceEEEEecCC
Q 003308 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNP 175 (832)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~ 175 (832)
+++|++||+.++++++++.. ...|.++.++++.|++ +.+++|++||+.+++++.++..+.
T Consensus 178 ------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 239 (445)
T 2ovr_B 178 ------------------DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 239 (445)
T ss_dssp ------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred ------------------CCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence 26799999999999999874 6789999998877776 568899999999999998887764
Q ss_pred CccCCCCCCCCCcccceeeeccceEEeeCCC--ceecC--CCccCCcccccccccccccCCCcceeeeecccccceece-
Q 003308 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSP--VVVSN--DGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG- 250 (832)
Q Consensus 176 ~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~--~~~s~--~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasG- 250 (832)
.. ...+++..++|+.++.. +..+. .+.. ...+. .....+...+. ..+.++.|
T Consensus 240 ~~------------v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~---------~~~~~v~~~~~-~~~~l~~~~ 296 (445)
T 2ovr_B 240 AA------------VRCVQYDGRRVVSGAYDFMVKVWDPETETC-LHTLQ---------GHTNRVYSLQF-DGIHVVSGS 296 (445)
T ss_dssp SC------------EEEEEECSSCEEEEETTSCEEEEEGGGTEE-EEEEC---------CCSSCEEEEEE-CSSEEEEEE
T ss_pred cc------------EEEEEECCCEEEEEcCCCEEEEEECCCCcE-eEEec---------CCCCceEEEEE-CCCEEEEEe
Confidence 31 22345555666655422 11221 1110 00000 01111222222 12222221
Q ss_pred ---eeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEecc---CCCCe
Q 003308 251 ---IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA---HKSPI 324 (832)
Q Consensus 251 ---i~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~a---H~~pI 324 (832)
...+.+....+ +...+......+...... ...++++..+|.|+|||+.+++++..+.. |..+|
T Consensus 297 ~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~-------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 365 (445)
T 2ovr_B 297 LDTSIRVWDVETGN----CIHTLTGHQSLTSGMELK-------DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 365 (445)
T ss_dssp TTSCEEEEETTTCC----EEEEECCCCSCEEEEEEE-------TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCE
T ss_pred CCCeEEEEECCCCC----EEEEEcCCcccEEEEEEe-------CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCE
Confidence 11111110000 000000000001000000 12356678899999999999999999986 88999
Q ss_pred EEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE---eccCccccEEEEEEccCCCEEEEEeCC
Q 003308 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL---QRGLTNAVIQDISFSDDSNWIMISSSR 401 (832)
Q Consensus 325 s~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l---~rG~t~a~I~~IaFSpDg~~LAsgS~D 401 (832)
.+++|+ +.+|++++.||+ |+|||+.++ ..+..+ ..+.....|++++|+||+.+||+++.|
T Consensus 366 ~~~~~~--~~~l~s~~~dg~-v~iwd~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~d 428 (445)
T 2ovr_B 366 TCLQFN--KNFVITSSDDGT-VKLWDLKTG--------------EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428 (445)
T ss_dssp EEEEEC--SSEEEEEETTSE-EEEEETTTC--------------CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred EEEEEC--CCEEEEEeCCCe-EEEEECCCC--------------ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccC
Confidence 999995 689999999997 999999876 333444 222334569999999999999999999
Q ss_pred Cc----EEEEecCCC
Q 003308 402 GT----SHLFAINPL 412 (832)
Q Consensus 402 gT----VhIwdl~~~ 412 (832)
|+ ++|||+...
T Consensus 429 g~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 429 GTEETKLLVLDFDVD 443 (445)
T ss_dssp SSSCCEEEEEECCCC
T ss_pred CCCccEEEEEECCCC
Confidence 98 999999764
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.85 E-value=5.2e-19 Score=196.83 Aligned_cols=247 Identities=15% Similarity=0.190 Sum_probs=168.7
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCccc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~ 97 (832)
..++..+.++.++|||+.. ++....+..|.++|.++++.|+. +|+.++.
T Consensus 133 ~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~~---------------~l~s~s~--------------- 181 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGG---------------ILVSGST--------------- 181 (464)
T ss_dssp TEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECSTT---------------EEEEEET---------------
T ss_pred CEEEEEcCCCcEEEEECCC-CcEEEEEeCCCcCEEEEEEcCCC---------------EEEEEeC---------------
Confidence 3444445566699999987 55666667899999999997631 3443332
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCceEEEE
Q 003308 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLEIEYAI 171 (832)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S----~r~LAV-a~~~~I~vwDl~t~~~~~tl 171 (832)
+++|++||++++++++++. +...|.+++++ .++|++ +.++.|++||+.+.+.....
T Consensus 182 ------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 182 ------------------DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp ------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred ------------------CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence 2679999999999999998 57899999996 255555 67889999999987654333
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceecee
Q 003308 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (832)
Q Consensus 172 ~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi 251 (832)
..... . +. +...... ....+..
T Consensus 244 ~~~~~---~-----------~~------~~~~~~~-------------------------~~~~~~~------------- 265 (464)
T 3v7d_B 244 GEEHD---Y-----------PL------VFHTPEE-------------------------NPYFVGV------------- 265 (464)
T ss_dssp ---CC---S-----------SE------EESCGGG-------------------------CTTEEEE-------------
T ss_pred cccCC---c-----------ce------EeeccCC-------------------------CeEEEEE-------------
Confidence 21100 0 00 0000000 0000000
Q ss_pred eeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC
Q 003308 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (832)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSP 331 (832)
..++.. .+....+. ...++++..+|.|++||+.+++++..+.+|..+|.+++|+|
T Consensus 266 -~~~~~~-----------------~v~~~~~~-------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 320 (464)
T 3v7d_B 266 -LRGHMA-----------------SVRTVSGH-------GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320 (464)
T ss_dssp -ECCCSS-----------------CEEEEEEE-------TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred -ccCccc-----------------eEEEEcCC-------CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC
Confidence 000000 00000000 01245567889999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 332 dG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
+|.+|++++.||+ |+|||+.++ ..+..+ .++. ..|.+++|+ +++|++++.||+|+|||+..
T Consensus 321 ~~~~l~sg~~dg~-i~vwd~~~~--------------~~~~~~-~~h~-~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 321 ERKRCISASMDTT-IRIWDLENG--------------ELMYTL-QGHT-ALVGLLRLS--DKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp TTTEEEEEETTSC-EEEEETTTT--------------EEEEEE-CCCS-SCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEeCCCc-EEEEECCCC--------------cEEEEE-eCCC-CcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence 9999999999998 999999876 555666 3443 469999998 57999999999999999987
Q ss_pred CCCc
Q 003308 412 LGGS 415 (832)
Q Consensus 412 ~g~~ 415 (832)
....
T Consensus 382 ~~~~ 385 (464)
T 3v7d_B 382 YSRK 385 (464)
T ss_dssp CCEE
T ss_pred Ccee
Confidence 5433
No 54
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.85 E-value=1.2e-19 Score=196.49 Aligned_cols=234 Identities=14% Similarity=0.144 Sum_probs=165.6
Q ss_pred cEEEEEecCCeEEEEeccCCCe-----eEEeeec-----CCCEEEEEEecCCCcccccCCcccccCCE-EEEEeCCCCcc
Q 003308 19 RVLLLGYRSGFQVWDVEEADNV-----HDLVSRY-----DGPVSFMQMLPRPITSKRSRDKFAEVRPL-LVFCADGSRSC 87 (832)
Q Consensus 19 ~vLl~Gy~~G~qVWdv~~~~~~-----~ellS~~-----dG~Vr~v~ilp~p~~~~~~~d~f~~~rPL-Lavv~~g~~~g 87 (832)
.+++.+.++.++|||+... .. ...+..| ++.|.++.+.+.+.. ...+ |++++.
T Consensus 83 ~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------~~~~~l~~~~~----- 146 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITRE-DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR----------LLSHRLVATDV----- 146 (397)
T ss_dssp EEEEEETTSCEEEEEEEEC-TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--------------CEEEEEEET-----
T ss_pred EEEEEcCCCCEEEEEccCC-cccccccceeecccccccCCCcEEEEEEeeccCC----------CCceEEEEEeC-----
Confidence 4444455667999999874 33 4455556 599999999832100 0124 554432
Q ss_pred CccccCCcccccCCCCCCCCCCCCCCCCCCEEEEEECCC------CcEEE-----EEe--------CCCCEEEEEEcCC-
Q 003308 88 GTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRS------QSYVH-----MLK--------FRSPIYSVRCSSR- 147 (832)
Q Consensus 88 ~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~T------g~~V~-----tL~--------f~s~V~sV~~S~r- 147 (832)
+++|++||+++ ++.+. ++. ....|.++++++.
T Consensus 147 ----------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 198 (397)
T 1sq9_A 147 ----------------------------KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG 198 (397)
T ss_dssp ----------------------------TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred ----------------------------CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc
Confidence 16799999998 77666 664 3678999999743
Q ss_pred EEEEE-eCCEEEEEECCCCceEEEEec---CCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccc
Q 003308 148 VVAIC-QAAQVHCFDAATLEIEYAILT---NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQS 223 (832)
Q Consensus 148 ~LAVa-~~~~I~vwDl~t~~~~~tl~t---~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s 223 (832)
+|+++ .++.|++||+.+++.+.++.. |... ..++ ..+++..
T Consensus 199 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~------------~~~i----~~i~~~~------------------- 243 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINN------------SNSI----RSVKFSP------------------- 243 (397)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCC---CC------------CCCE----EEEEECS-------------------
T ss_pred eEEEEeCCCcEEEEECCCCceeEEEecccccccc------------CCcc----ceEEECC-------------------
Confidence 66664 578999999999988888876 3100 0011 1223321
Q ss_pred cccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCC---
Q 003308 224 RSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNV--- 300 (832)
Q Consensus 224 ~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~--- 300 (832)
++.. ++.+..+
T Consensus 244 --------~~~~----------------------------------------------------------l~~~~~d~~~ 257 (397)
T 1sq9_A 244 --------QGSL----------------------------------------------------------LAIAHDSNSF 257 (397)
T ss_dssp --------STTE----------------------------------------------------------EEEEEEETTE
T ss_pred --------CCCE----------------------------------------------------------EEEEecCCCC
Confidence 0111 1223345
Q ss_pred CeEEEEECCCCcEEEEecc-------------CCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCc
Q 003308 301 GMVIVRDIVSKNVIAQFRA-------------HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 367 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~a-------------H~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~ 367 (832)
|.|+|||+.+++++..+.. |..+|.+++|+|+|++||+++.||+ |+|||+.++
T Consensus 258 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~------------- 323 (397)
T 1sq9_A 258 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTK------------- 323 (397)
T ss_dssp EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTT-------------
T ss_pred ceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCC-------------
Confidence 8999999999999999998 9999999999999999999999997 899999876
Q ss_pred eeEEEEEec-----cC--------------ccccEEEEEEccCC----------CEEEEEeCCCcEEEEecCCC
Q 003308 368 YVHLYRLQR-----GL--------------TNAVIQDISFSDDS----------NWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 368 ~~~l~~l~r-----G~--------------t~a~I~~IaFSpDg----------~~LAsgS~DgTVhIwdl~~~ 412 (832)
..+..+.. ++ +...|.+++|+||+ ++|++++.||+|+||++..+
T Consensus 324 -~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 324 -ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp -EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred -ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 44555541 22 13469999999999 79999999999999999764
No 55
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.85 E-value=1.5e-18 Score=216.97 Aligned_cols=326 Identities=13% Similarity=0.121 Sum_probs=197.0
Q ss_pred CcEEEEE-ecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLG-YRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~G-y~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
.+.|+.| .++.++|||+.. +.....+..|.+.|.++++.|+. .+||.++.
T Consensus 627 ~~~l~s~~~d~~i~vw~~~~-~~~~~~~~~h~~~v~~~~~s~~~--------------~~l~s~~~-------------- 677 (1249)
T 3sfz_A 627 GQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSDD--------------SYIATCSA-------------- 677 (1249)
T ss_dssp SSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CCEEEEEeCCCeEEEEECCC-CCEEEEeccCCCCEEEEEEecCC--------------CEEEEEeC--------------
Confidence 4455554 455699999987 45555666799999999998753 24655542
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC----CEEEE-EeCCEEEEEECCCCceEEE
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLEIEYA 170 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~----r~LAV-a~~~~I~vwDl~t~~~~~t 170 (832)
+++|++||+.+++++.++.. ...|.+++|++ .++++ +.++.|++||+.+++++.+
T Consensus 678 -------------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~ 738 (1249)
T 3sfz_A 678 -------------------DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT 738 (1249)
T ss_dssp -------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE
T ss_pred -------------------CCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe
Confidence 17899999999999999975 67999999964 35665 5678999999999999999
Q ss_pred EecCCCccCCCCCCCCCcccceeeecc--ceEEeeCCC--ceecC--CCcc----CCcc-ccc----------ccccccc
Q 003308 171 ILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSN--DGRV----NPQH-LMQ----------SRSFSGF 229 (832)
Q Consensus 171 l~t~~~~~~~p~~~~~~~~~~p~Alg~--r~LAya~~~--~~~s~--~Grv----sp~~-l~~----------s~~~s~~ 229 (832)
+..|... +..++++| ++|+.++.. +..|. .+.. .... ... .......
T Consensus 739 ~~~h~~~------------v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 739 MFGHTNS------------VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp ECCCSSC------------EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred ecCCCCC------------EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 8876431 22345554 566665432 22232 1110 0000 000 0000001
Q ss_pred cCCCcceeeeecccccceeceeeeccCccccccccccccccCCCc-Ccccc--ccCCCCCCCcccccccccCCCCeEEEE
Q 003308 230 ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ-NSLQS--AIPGGKSNGTVNGHFPDADNVGMVIVR 306 (832)
Q Consensus 230 ~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~-~si~s--a~~~~~~~g~~~g~~~s~~~~G~V~Iw 306 (832)
..+|..++..+. +-..+.+..... .......++ ..+.. .+++ | ..++.+..+|.|++|
T Consensus 807 s~dg~~l~~~~~--------~~v~~~d~~~~~----~~~~~~~~~~~~v~~~~~sp~----~---~~l~~~~~dg~v~vw 867 (1249)
T 3sfz_A 807 SADGDKIIVAAK--------NKVLLFDIHTSG----LLAEIHTGHHSTIQYCDFSPY----D---HLAVIALSQYCVELW 867 (1249)
T ss_dssp CTTSSEEEEEET--------TEEEEEETTTCC----EEEEEECSSSSCCCEEEECSS----T---TEEEEECSSSCEEEE
T ss_pred CCCCCEEEEEcC--------CcEEEEEecCCC----ceeEEcCCCCCceEEEEEcCC----C---CEEEEEeCCCeEEEE
Confidence 123332221110 000011110000 000000010 11111 1111 1 134567789999999
Q ss_pred ECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCcc--------CC---------CCcee
Q 003308 307 DIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC--------DA---------GTSYV 369 (832)
Q Consensus 307 Dl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~--------~~---------~~~~~ 369 (832)
|+.+++.+..+.+|..+|.+++|+|+|++|+|++.||+ |++||+........... .. .....
T Consensus 868 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 868 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT-IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946 (1249)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred EcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCe-EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence 99999999999999999999999999999999999998 89999754210000000 00 00000
Q ss_pred EEEEEecc----CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCC
Q 003308 370 HLYRLQRG----LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (832)
Q Consensus 370 ~l~~l~rG----~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~~ 423 (832)
.+.....+ .....|.+++|+||++++++++.||+|++|++........+.+|..
T Consensus 947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~ 1004 (1249)
T 3sfz_A 947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK 1004 (1249)
T ss_dssp EEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSS
T ss_pred EEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCC
Confidence 11110000 0123589999999999999999999999999988766667777744
No 56
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.5e-18 Score=180.35 Aligned_cols=259 Identities=14% Similarity=0.209 Sum_probs=171.7
Q ss_pred CcEEEEEec-CCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLGYR-SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~Gy~-~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
...|+.|.. +.++|||+.. +.....+..|.+.|.++.+.|+. .+|+.++.
T Consensus 29 ~~~l~s~~~dg~v~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~-------------- 79 (313)
T 3odt_A 29 DSKVASVSRDGTVRLWSKDD-QWLGTVVYTGQGFLNSVCYDSEK--------------ELLLFGGK-------------- 79 (313)
T ss_dssp TTEEEEEETTSEEEEEEESS-SEEEEEEEECSSCEEEEEEETTT--------------TEEEEEET--------------
T ss_pred CCEEEEEEcCCcEEEEECCC-CEEEEEeecCCccEEEEEECCCC--------------CEEEEecC--------------
Confidence 334555554 4599999976 56677777899999999998743 24554442
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCC---cEEEEEe-CCCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceEEEE
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQ---SYVHMLK-FRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAI 171 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg---~~V~tL~-f~s~V~sV~~S~r~LAV-a~~~~I~vwDl~t~~~~~tl 171 (832)
++.|++|++... +.+..+. +...|.++.+++++|++ +.++.|++|| +.+.+..+
T Consensus 80 -------------------dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~ 138 (313)
T 3odt_A 80 -------------------DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNL 138 (313)
T ss_dssp -------------------TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEE
T ss_pred -------------------CCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEec
Confidence 156899998654 5566665 46799999998888777 5688999999 66677777
Q ss_pred ecCCCccCCCCCCCCCcccceeee---ccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccccee
Q 003308 172 LTNPIVMGHPSAGGIGIGYGPLAV---GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (832)
Q Consensus 172 ~t~~~~~~~p~~~~~~~~~~p~Al---g~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~la 248 (832)
..+... ...+++ ...+|+.++. +..+.-|- ..+.+
T Consensus 139 ~~~~~~------------v~~~~~~~~~~~~l~~~~~---------------------------d~~i~i~d--~~~~~- 176 (313)
T 3odt_A 139 QAHNAS------------VWDAKVVSFSENKFLTASA---------------------------DKTIKLWQ--NDKVI- 176 (313)
T ss_dssp ECCSSC------------EEEEEEEETTTTEEEEEET---------------------------TSCEEEEE--TTEEE-
T ss_pred ccCCCc------------eeEEEEccCCCCEEEEEEC---------------------------CCCEEEEe--cCceE-
Confidence 665321 111221 1233333321 11111111 00000
Q ss_pred ceeeeccCccccccccccccccCCCcCcccc-c-cCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEE
Q 003308 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQS-A-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA 326 (832)
Q Consensus 249 sGi~~lGd~g~~~ls~y~~~~~p~~~~si~s-a-~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~ 326 (832)
..+-.. ....+.. + .++ +.++.+..+|.|+|||+.+++++..+++|..+|.+
T Consensus 177 ---~~~~~~---------------~~~~i~~~~~~~~--------~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 230 (313)
T 3odt_A 177 ---KTFSGI---------------HNDVVRHLAVVDD--------GHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYC 230 (313)
T ss_dssp ---EEECSS---------------CSSCEEEEEEEET--------TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ---EEEecc---------------CcccEEEEEEcCC--------CeEEEccCCCeEEEEECCchhhhhhhhcCCceEEE
Confidence 000000 0000000 0 011 12556778999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEE
Q 003308 327 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 406 (832)
Q Consensus 327 LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhI 406 (832)
++|+|+| +|++++.||+ |+|||+.++ ..+..+. ++ ...|.+++|+||++ +++++.||+|+|
T Consensus 231 ~~~~~~~-~l~~~~~dg~-v~iwd~~~~--------------~~~~~~~-~~-~~~i~~~~~~~~~~-~~~~~~dg~i~i 291 (313)
T 3odt_A 231 IKLLPNG-DIVSCGEDRT-VRIWSKENG--------------SLKQVIT-LP-AISIWSVDCMSNGD-IIVGSSDNLVRI 291 (313)
T ss_dssp EEECTTS-CEEEEETTSE-EEEECTTTC--------------CEEEEEE-CS-SSCEEEEEECTTSC-EEEEETTSCEEE
T ss_pred EEEecCC-CEEEEecCCE-EEEEECCCC--------------ceeEEEe-cc-CceEEEEEEccCCC-EEEEeCCCcEEE
Confidence 9999999 5889999987 999999876 3444553 33 34699999999999 557999999999
Q ss_pred EecCCCC
Q 003308 407 FAINPLG 413 (832)
Q Consensus 407 wdl~~~g 413 (832)
|++.+..
T Consensus 292 w~~~~~~ 298 (313)
T 3odt_A 292 FSQEKSR 298 (313)
T ss_dssp EESCGGG
T ss_pred EeCCCCc
Confidence 9997643
No 57
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.84 E-value=6.4e-19 Score=190.73 Aligned_cols=237 Identities=12% Similarity=0.169 Sum_probs=159.0
Q ss_pred CcEEEEEecCCeEEEEeccCC-CeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLGYRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~-~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
+.++..+.++.++|||+.... .....+..|.++|.++++.|+. .+|+.++.
T Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~--------------~~l~s~s~-------------- 125 (345)
T 3fm0_A 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG--------------NLLATCSR-------------- 125 (345)
T ss_dssp SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC--------------CEEEEEEC--------------
Confidence 344455556779999997632 2344566789999999998753 24554442
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCc---EEEEEe-CCCCEEEEEEcC--CEEEE-EeCCEEEEEECCCCc--e
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQS---YVHMLK-FRSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLE--I 167 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~---~V~tL~-f~s~V~sV~~S~--r~LAV-a~~~~I~vwDl~t~~--~ 167 (832)
+++|++||+++++ ++..+. +...|.+++|++ ++||+ +.+++|++||+.+.+ +
T Consensus 126 -------------------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~ 186 (345)
T 3fm0_A 126 -------------------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC 186 (345)
T ss_dssp -------------------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEE
T ss_pred -------------------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEE
Confidence 2679999998874 455554 367899999974 56666 568899999998765 3
Q ss_pred EEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccce
Q 003308 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (832)
Q Consensus 168 ~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~l 247 (832)
..++..|.. ++ .-|+|.. +|.
T Consensus 187 ~~~~~~h~~---------------~v----~~l~~sp---------------------------~g~------------- 207 (345)
T 3fm0_A 187 CATLEGHES---------------TV----WSLAFDP---------------------------SGQ------------- 207 (345)
T ss_dssp EEEECCCSS---------------CE----EEEEECT---------------------------TSS-------------
T ss_pred EEEecCCCC---------------ce----EEEEECC---------------------------CCC-------------
Confidence 455554421 01 1123321 111
Q ss_pred eceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCC---------------Cc
Q 003308 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS---------------KN 312 (832)
Q Consensus 248 asGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s---------------~~ 312 (832)
.++++..||+|+|||+.. .+
T Consensus 208 ---------------------------------------------~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 208 ---------------------------------------------RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp ---------------------------------------------EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred ---------------------------------------------EEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 122345677788887521 13
Q ss_pred EEEEecc-CCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccC
Q 003308 313 VIAQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 391 (832)
Q Consensus 313 ~l~~~~a-H~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpD 391 (832)
++..+.+ |...|.+++|+|++.+||+++.|++ |+||+..+..... .........+.+++. ..|.+|+|+|+
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~~------~~~~~~~~~~~~~h~-~~V~~v~~~p~ 314 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSDPQ------QPTFSLTAHLHQAHS-QDVNCVAWNPK 314 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSCTT------SCCEEEEEEETTSSS-SCEEEEEECSS
T ss_pred eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCCcc------eeeEEEEeeeccccc-CcEeEeEEeCC
Confidence 4566665 8899999999999999999999998 9999987641100 011122223334554 45999999999
Q ss_pred C-CEEEEEeCCCcEEEEecCCCC
Q 003308 392 S-NWIMISSSRGTSHLFAINPLG 413 (832)
Q Consensus 392 g-~~LAsgS~DgTVhIwdl~~~g 413 (832)
+ .+||++|.||+|+||++....
T Consensus 315 ~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 315 EPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp STTEEEEEETTSCEEEEEECC--
T ss_pred CceEEEEcCCCCcEEEEEecCCC
Confidence 8 599999999999999997754
No 58
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.84 E-value=1.1e-18 Score=183.00 Aligned_cols=107 Identities=14% Similarity=0.310 Sum_probs=90.5
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003308 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (832)
Q Consensus 297 ~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~r 376 (832)
+..+|.|++||+.+++++..++.|..+|.+++|+|+|++|++++.||+ |++||+..+ ..+..+.
T Consensus 159 ~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~--------------~~~~~~~- 222 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREG--------------RQLQQHD- 222 (337)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTT--------------EEEEEEE-
T ss_pred EeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc-EEEEECCCC--------------ceEeeec-
Confidence 346789999999999999999999999999999999999999999987 899999876 3444442
Q ss_pred cCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCC
Q 003308 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (832)
Q Consensus 377 G~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~ 422 (832)
....|.+++|+||+++|++++.|++|++|++... ....+..|.
T Consensus 223 --~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~ 265 (337)
T 1gxr_A 223 --FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-DKYQLHLHE 265 (337)
T ss_dssp --CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-CEEEECCCS
T ss_pred --CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-CeEEEcCCc
Confidence 2345999999999999999999999999999865 344555553
No 59
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.84 E-value=5e-19 Score=196.81 Aligned_cols=219 Identities=14% Similarity=0.256 Sum_probs=164.4
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCccc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~ 97 (832)
+.+++.+.++.++|||+.. ++....+..|.++|.++.+ ++ .+|+.++.
T Consensus 144 ~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~--~~--------------~~l~sg~~--------------- 191 (435)
T 1p22_A 144 QKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQY--DE--------------RVIITGSS--------------- 191 (435)
T ss_dssp SEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEEC--CS--------------SEEEEEET---------------
T ss_pred CEEEEEeCCCeEEEEeCCC-CeEEEEEcCCCCcEEEEEE--CC--------------CEEEEEcC---------------
Confidence 4455556666799999986 5677777789999998876 11 24544432
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceE---EEEe
Q 003308 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIE---YAIL 172 (832)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~r~LAV-a~~~~I~vwDl~t~~~~---~tl~ 172 (832)
+++|++||+.+++++.++.. ...|.+++++++.|++ +.++.|++||+.+.+.. ..+.
T Consensus 192 ------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 253 (435)
T 1p22_A 192 ------------------DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 253 (435)
T ss_dssp ------------------TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEEC
T ss_pred ------------------CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEec
Confidence 26799999999999999975 6789999999887777 56889999999987654 2222
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceee
Q 003308 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (832)
Q Consensus 173 t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~ 252 (832)
.|.. ++ ..+++. + +
T Consensus 254 ~~~~---------------~v----~~~~~~-----------------------------~-----------~------- 267 (435)
T 1p22_A 254 GHRA---------------AV----NVVDFD-----------------------------D-----------K------- 267 (435)
T ss_dssp CCSS---------------CE----EEEEEE-----------------------------T-----------T-------
T ss_pred CCCC---------------cE----EEEEeC-----------------------------C-----------C-------
Confidence 2210 00 001110 0 0
Q ss_pred eccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC
Q 003308 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (832)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPd 332 (832)
.++++..+|.|+|||+.+++++..+.+|..+|.+++| +
T Consensus 268 ----------------------------------------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~ 305 (435)
T 1p22_A 268 ----------------------------------------YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--R 305 (435)
T ss_dssp ----------------------------------------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--E
T ss_pred ----------------------------------------EEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--C
Confidence 1233456889999999999999999999999999999 5
Q ss_pred CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003308 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 333 G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
+.+|++++.||+ |+|||+.++ ..+..+ .++. ..|.+++| |+++|++++.||+|+|||+...
T Consensus 306 ~~~l~~g~~dg~-i~iwd~~~~--------------~~~~~~-~~h~-~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 306 DRLVVSGSSDNT-IRLWDIECG--------------ACLRVL-EGHE-ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp TTEEEEEETTSC-EEEEETTTC--------------CEEEEE-CCCS-SCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred CCEEEEEeCCCe-EEEEECCCC--------------CEEEEE-eCCc-CcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 789999999998 899999876 455555 3443 45999999 8899999999999999999654
Q ss_pred C
Q 003308 413 G 413 (832)
Q Consensus 413 g 413 (832)
.
T Consensus 367 ~ 367 (435)
T 1p22_A 367 L 367 (435)
T ss_dssp T
T ss_pred C
Confidence 3
No 60
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=8.5e-19 Score=188.55 Aligned_cols=232 Identities=11% Similarity=0.155 Sum_probs=155.9
Q ss_pred EEEE-EecCCeEEEEeccCC-CeeEEe-ee-cCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCc
Q 003308 20 VLLL-GYRSGFQVWDVEEAD-NVHDLV-SR-YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (832)
Q Consensus 20 vLl~-Gy~~G~qVWdv~~~~-~~~ell-S~-~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~ 95 (832)
+|+. +.++.++|||+.... .....+ .. |.++|+++++.|.. .+||.++.
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~--------------~~las~s~------------- 78 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT--------------SLLAAGSF------------- 78 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS--------------SEEEEEET-------------
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC--------------CEEEEEeC-------------
Confidence 4444 456669999997632 233334 23 88999999998743 25655542
Q ss_pred ccccCCCCCCCCCCCCCCCCCCEEEEEECCC-------CcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCC
Q 003308 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRS-------QSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAAT 164 (832)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~T-------g~~V~tL~-f~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t 164 (832)
+++|+|||+.. .+++.++. +...|.+|+|+ +++||+ +.|++|++||+.+
T Consensus 79 --------------------D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 79 --------------------DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp --------------------TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred --------------------CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 26799999953 45677775 46799999997 467776 5688999999953
Q ss_pred C----ceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeee
Q 003308 165 L----EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYA 240 (832)
Q Consensus 165 ~----~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A 240 (832)
. +++.++..|.. ++ ..|+|.+ ++.
T Consensus 139 ~~~~~~~~~~~~~h~~---------------~v----~~v~~~p---------------------------~~~------ 166 (330)
T 2hes_X 139 SGEEYECISVLQEHSQ---------------DV----KHVIWHP---------------------------SEA------ 166 (330)
T ss_dssp TCCCCEEEEEECCCSS---------------CE----EEEEECS---------------------------SSS------
T ss_pred CCCCeEEEEEeccCCC---------------ce----EEEEECC---------------------------CCC------
Confidence 2 34455544421 01 1123321 010
Q ss_pred cccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCC--cEEEEec
Q 003308 241 KESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFR 318 (832)
Q Consensus 241 ~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~--~~l~~~~ 318 (832)
.++++..||+|+|||+.++ +++..+.
T Consensus 167 ----------------------------------------------------~l~s~s~D~~i~iW~~~~~~~~~~~~~~ 194 (330)
T 2hes_X 167 ----------------------------------------------------LLASSSYDDTVRIWKDYDDDWECVAVLN 194 (330)
T ss_dssp ----------------------------------------------------EEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred ----------------------------------------------------EEEEEcCCCeEEEEECCCCCeeEEEEcc
Confidence 1234567899999999876 6889999
Q ss_pred cCCCCeEEEEEcCC--CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEE
Q 003308 319 AHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIM 396 (832)
Q Consensus 319 aH~~pIs~LaFSPd--G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LA 396 (832)
+|..+|.+++|+|+ +.+||+++.||+ |+|||+..+.... ......+..+. +.+...|++++|++++ +||
T Consensus 195 ~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~~------~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~ 265 (330)
T 2hes_X 195 GHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDEDD------QQEWVCEAILP-DVHKRQVYNVAWGFNG-LIA 265 (330)
T ss_dssp CCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTTS------CEEEEEEEECC-SCCSSCEEEEEECTTS-CEE
T ss_pred CCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCccc------cceeEEeeecc-cccccceEEEEEcCCC-EEE
Confidence 99999999999999 789999999998 8999986531000 00112233332 3234469999999765 889
Q ss_pred EEeCCCcEEEEecCC
Q 003308 397 ISSSRGTSHLFAINP 411 (832)
Q Consensus 397 sgS~DgTVhIwdl~~ 411 (832)
+++.||+|+||++..
T Consensus 266 s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 266 SVGADGVLAVYEEVD 280 (330)
T ss_dssp EEETTSCEEEEEEET
T ss_pred EEeCCCEEEEEEcCC
Confidence 999999999999864
No 61
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.84 E-value=4e-18 Score=183.79 Aligned_cols=174 Identities=11% Similarity=0.126 Sum_probs=129.0
Q ss_pred CEEEEEECCCC-------cEEEEEe-CCCCEEEEEEcC--CEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCC
Q 003308 117 TVVHFYSLRSQ-------SYVHMLK-FRSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGG 185 (832)
Q Consensus 117 ~tVrlWDL~Tg-------~~V~tL~-f~s~V~sV~~S~--r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~ 185 (832)
++|++||+.++ ....++. +...|.+++|++ ++|++ +.|++|++||+.+++++.++..|...
T Consensus 49 ~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~-------- 120 (343)
T 2xzm_R 49 KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE-------- 120 (343)
T ss_dssp SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSC--------
T ss_pred CEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc--------
Confidence 78999999753 4566665 467899999974 66666 56899999999999998888776421
Q ss_pred CCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccc
Q 003308 186 IGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQY 265 (832)
Q Consensus 186 ~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y 265 (832)
+ ..++|.. ++.
T Consensus 121 -------v----~~v~~sp---------------------------~~~------------------------------- 131 (343)
T 2xzm_R 121 -------V----YSVAFSP---------------------------DNR------------------------------- 131 (343)
T ss_dssp -------E----EEEEECS---------------------------STT-------------------------------
T ss_pred -------E----EEEEECC---------------------------CCC-------------------------------
Confidence 1 1233331 111
Q ss_pred cccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEec---cCCCCeEEEEEcCCC---------
Q 003308 266 CSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR---AHKSPISALCFDPSG--------- 333 (832)
Q Consensus 266 ~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~---aH~~pIs~LaFSPdG--------- 333 (832)
.++++..||.|+|||+... ....+. .|...|.+++|+|++
T Consensus 132 ---------------------------~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (343)
T 2xzm_R 132 ---------------------------QILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPF 183 (343)
T ss_dssp ---------------------------EEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSS
T ss_pred ---------------------------EEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCC
Confidence 1223456789999999854 333333 799999999999998
Q ss_pred -CEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003308 334 -ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 334 -~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
.+||+++.||+ |+|||... ..+..+ +++. ..|.+++|+|||++||+++.||+|+|||+...
T Consensus 184 ~~~l~s~~~d~~-i~iwd~~~---------------~~~~~~-~~h~-~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 184 APYFASVGWDGR-LKVWNTNF---------------QIRYTF-KAHE-SNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp CCEEEEEETTSE-EEEEETTT---------------EEEEEE-ECCS-SCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred CCEEEEEcCCCE-EEEEcCCC---------------ceeEEE-cCcc-ccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 79999999997 89999432 334444 3443 46999999999999999999999999999544
Q ss_pred C
Q 003308 413 G 413 (832)
Q Consensus 413 g 413 (832)
+
T Consensus 246 ~ 246 (343)
T 2xzm_R 246 T 246 (343)
T ss_dssp S
T ss_pred c
Confidence 3
No 62
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.2e-19 Score=200.22 Aligned_cols=241 Identities=16% Similarity=0.286 Sum_probs=165.2
Q ss_pred CcEEEEEe-cCCeEEEEecc---CCCeeEEee-ecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCcccc
Q 003308 18 RRVLLLGY-RSGFQVWDVEE---ADNVHDLVS-RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (832)
Q Consensus 18 ~~vLl~Gy-~~G~qVWdv~~---~~~~~ellS-~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~ 92 (832)
..+|+.|. ++.++|||+.. ....+..+. .|.++|.++++.|+. .+|+.++.
T Consensus 76 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~s~---------- 131 (437)
T 3gre_A 76 TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF--------------DAFAVSSK---------- 131 (437)
T ss_dssp SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS--------------SEEEEEET----------
T ss_pred CCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC--------------CEEEEEeC----------
Confidence 44555554 55599999976 221221222 589999999998742 24554442
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCEEEEEECC---CCcEEEEEe--------C-----CCCEEEEEEc----CCEEEE-
Q 003308 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLR---SQSYVHMLK--------F-----RSPIYSVRCS----SRVVAI- 151 (832)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~---Tg~~V~tL~--------f-----~s~V~sV~~S----~r~LAV- 151 (832)
+++|++||+. +++++..+. | ...+.++.+. +++|++
T Consensus 132 -----------------------dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 132 -----------------------DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp -----------------------TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred -----------------------CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 2789999994 666655443 2 2345555532 456666
Q ss_pred EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccC
Q 003308 152 CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS 231 (832)
Q Consensus 152 a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s 231 (832)
+.++.|++||+.+++++.++..++. ..++ ..|++..
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~h-------------~~~v----~~~~~s~--------------------------- 224 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSPR-------------HGAV----SSICIDE--------------------------- 224 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCGG-------------GCCE----EEEEECT---------------------------
T ss_pred eCCCeEEEEeCCCCeeeEEEccCCC-------------CCce----EEEEECC---------------------------
Confidence 5678999999999999888876210 0011 1223321
Q ss_pred CCcceeeeecccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCC
Q 003308 232 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK 311 (832)
Q Consensus 232 ~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~ 311 (832)
++. .++++..+|.|+|||+.++
T Consensus 225 ~~~----------------------------------------------------------~l~s~~~dg~i~iwd~~~~ 246 (437)
T 3gre_A 225 ECC----------------------------------------------------------VLILGTTRGIIDIWDIRFN 246 (437)
T ss_dssp TSC----------------------------------------------------------EEEEEETTSCEEEEETTTT
T ss_pred CCC----------------------------------------------------------EEEEEcCCCeEEEEEcCCc
Confidence 011 1233456789999999999
Q ss_pred cEEEEec-cCCCCeEEEE----EcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe-----------
Q 003308 312 NVIAQFR-AHKSPISALC----FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ----------- 375 (832)
Q Consensus 312 ~~l~~~~-aH~~pIs~La----FSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~----------- 375 (832)
+++..+. .|..+|.+|+ |+|+|.+||+++.||+ |+|||+.++ ..+..+.
T Consensus 247 ~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~--------------~~~~~~~~~~~~~~~~~~ 311 (437)
T 3gre_A 247 VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWNFVKG--------------HCQYAFINSDEQPSMEHF 311 (437)
T ss_dssp EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEETTTT--------------EEEEEEESSSSCCCGGGG
T ss_pred cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEEcCCC--------------cEEEEEEcCCCCCcccee
Confidence 9999987 8888999995 5567999999999987 999999876 2333332
Q ss_pred ------------cc-CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCC
Q 003308 376 ------------RG-LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (832)
Q Consensus 376 ------------rG-~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~~ 423 (832)
.| .+...|.+++|+ ++++|++++.|++|+|||+........+.+|..
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 371 (437)
T 3gre_A 312 LPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSR 371 (437)
T ss_dssp SCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--
T ss_pred cccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccc
Confidence 11 123348999999 889999999999999999998877778877743
No 63
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.84 E-value=1.3e-18 Score=205.72 Aligned_cols=238 Identities=13% Similarity=0.221 Sum_probs=168.5
Q ss_pred cEEEE-EecCCeEEEEeccCC----CeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccC
Q 003308 19 RVLLL-GYRSGFQVWDVEEAD----NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (832)
Q Consensus 19 ~vLl~-Gy~~G~qVWdv~~~~----~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~D 93 (832)
.+|+. +.++.++|||+.... .....+..|.+.|.++.+.|+. .+|+.++.
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g--------------~~l~sgs~----------- 450 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG--------------QFALSGSW----------- 450 (694)
T ss_dssp SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS--------------SEEEEEET-----------
T ss_pred CEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC--------------CEEEEEeC-----------
Confidence 45554 556669999997643 2345567799999999998753 24544432
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEcC--CEEEE-EeCCEEEEEECCCCceEE
Q 003308 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEY 169 (832)
Q Consensus 94 g~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S~--r~LAV-a~~~~I~vwDl~t~~~~~ 169 (832)
+++|+|||+.++++++++. +...|.+|+|++ +.|++ +.|++|++||+... +..
T Consensus 451 ----------------------Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~ 507 (694)
T 3dm0_A 451 ----------------------DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKY 507 (694)
T ss_dssp ----------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEE
T ss_pred ----------------------CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cce
Confidence 2789999999999999886 467999999973 45555 67899999997643 333
Q ss_pred EEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceec
Q 003308 170 AILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (832)
Q Consensus 170 tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~las 249 (832)
++..... + ....+ ..+++..
T Consensus 508 ~~~~~~~--~---------h~~~v----~~~~~~~--------------------------------------------- 527 (694)
T 3dm0_A 508 TISEGGE--G---------HRDWV----SCVRFSP--------------------------------------------- 527 (694)
T ss_dssp EECSSTT--S---------CSSCE----EEEEECS---------------------------------------------
T ss_pred eeccCCC--C---------CCCcE----EEEEEeC---------------------------------------------
Confidence 3321100 0 00001 1122221
Q ss_pred eeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003308 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (832)
Q Consensus 250 Gi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaF 329 (832)
++. ...++++..||.|+|||+.+++++..+.+|..+|.+|+|
T Consensus 528 ----------------------~~~----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 569 (694)
T 3dm0_A 528 ----------------------NTL----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAV 569 (694)
T ss_dssp ----------------------CSS----------------SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred ----------------------CCC----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 000 001334567899999999999999999999999999999
Q ss_pred cCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003308 330 DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (832)
Q Consensus 330 SPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl 409 (832)
+|+|++|||++.||+ |+|||+.++ ..++.+.. ...|.+++||||+.+|++++ |+.|+|||+
T Consensus 570 spdg~~l~sg~~Dg~-i~iwd~~~~--------------~~~~~~~~---~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~ 630 (694)
T 3dm0_A 570 SPDGSLCASGGKDGV-VLLWDLAEG--------------KKLYSLEA---NSVIHALCFSPNRYWLCAAT-EHGIKIWDL 630 (694)
T ss_dssp CTTSSEEEEEETTSB-CEEEETTTT--------------EEEECCBC---SSCEEEEEECSSSSEEEEEE-TTEEEEEET
T ss_pred eCCCCEEEEEeCCCe-EEEEECCCC--------------ceEEEecC---CCcEEEEEEcCCCcEEEEEc-CCCEEEEEC
Confidence 999999999999998 899999886 45555532 24599999999999998776 566999999
Q ss_pred CCCCCceeeccC
Q 003308 410 NPLGGSVNFQPT 421 (832)
Q Consensus 410 ~~~g~~~~~~~H 421 (832)
........+..|
T Consensus 631 ~~~~~~~~~~~~ 642 (694)
T 3dm0_A 631 ESKSIVEDLKVD 642 (694)
T ss_dssp TTTEEEEEECCC
T ss_pred CCCCChhhhccc
Confidence 876544455443
No 64
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.83 E-value=7.9e-18 Score=178.35 Aligned_cols=187 Identities=14% Similarity=0.238 Sum_probs=135.8
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccce
Q 003308 117 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p 192 (832)
++|++||+.+++.+.++. +...|.+++|+ +++|++ +.++.|++||+.+++++.++. +.. ..
T Consensus 54 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~------------~v-- 118 (369)
T 3zwl_B 54 SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPV------------PV-- 118 (369)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSS------------CE--
T ss_pred CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCC------------Ce--
Confidence 679999999999999998 47799999997 466666 568899999999999888776 221 01
Q ss_pred eeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCC
Q 003308 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (832)
Q Consensus 193 ~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~ 272 (832)
..+++.. ++..+ +.+.
T Consensus 119 -----~~~~~~~---------------------------~~~~l-----------~~~~--------------------- 134 (369)
T 3zwl_B 119 -----KRVEFSP---------------------------CGNYF-----------LAIL--------------------- 134 (369)
T ss_dssp -----EEEEECT---------------------------TSSEE-----------EEEE---------------------
T ss_pred -----EEEEEcc---------------------------CCCEE-----------EEec---------------------
Confidence 1123321 11111 1000
Q ss_pred CcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc-----------EEEEeccCCC--CeEEEEEcCCCCEEEEE
Q 003308 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-----------VIAQFRAHKS--PISALCFDPSGILLVTA 339 (832)
Q Consensus 273 ~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~-----------~l~~~~aH~~--pIs~LaFSPdG~lLATa 339 (832)
. .....+|.|++||+.... .+..+..|.. .|.+++|+|+|++|+++
T Consensus 135 ---------~------------~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (369)
T 3zwl_B 135 ---------D------------NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG 193 (369)
T ss_dssp ---------C------------CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE
T ss_pred ---------C------------CccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE
Confidence 0 001234788888887542 5566677777 99999999999999999
Q ss_pred EcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003308 340 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (832)
Q Consensus 340 S~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~ 419 (832)
+.||. |++||+.+. ...+..+. ++ ...|.+++|+||+++|++++.|++|+|||+........+.
T Consensus 194 ~~dg~-i~i~d~~~~-------------~~~~~~~~-~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 194 HKDGK-ISKYDVSNN-------------YEYVDSID-LH-EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257 (369)
T ss_dssp ETTSE-EEEEETTTT-------------TEEEEEEE-CC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cCCCE-EEEEECCCC-------------cEeEEEEe-cC-CCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence 99987 899999873 13444443 33 3459999999999999999999999999998865555554
No 65
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.83 E-value=4e-19 Score=198.17 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=91.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003308 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (832)
Q Consensus 295 ~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~-lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~ 373 (832)
+++..+|.|+|||+.. +.+..+.+|..+|.+|+|+|++. +|++++.||+ |+|||+...... ..+ .
T Consensus 225 ~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v~iwd~~~~~~~-----------~~~-~ 290 (435)
T 4e54_B 225 VTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVRGK-----------ASF-L 290 (435)
T ss_dssp EEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-CCEEETTTCCSS-----------SCC-S
T ss_pred EEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcce-eeEEeccccccc-----------ceE-E
Confidence 3456789999999875 56788999999999999999987 7899999998 899999875110 000 1
Q ss_pred EeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCC
Q 003308 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (832)
Q Consensus 374 l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~~~ 424 (832)
...++ ...|.+|+|+|||++|++++.||+|+||++........+..|...
T Consensus 291 ~~~~h-~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~ 340 (435)
T 4e54_B 291 YSLPH-RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 340 (435)
T ss_dssp BCCBC-SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC
T ss_pred Eeeec-cccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc
Confidence 11233 245999999999999999999999999999998888888777543
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.83 E-value=1.6e-18 Score=185.15 Aligned_cols=231 Identities=10% Similarity=0.112 Sum_probs=164.8
Q ss_pred CcEEEEE-ecCCeEEEEeccCCC--eeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCC
Q 003308 18 RRVLLLG-YRSGFQVWDVEEADN--VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (832)
Q Consensus 18 ~~vLl~G-y~~G~qVWdv~~~~~--~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg 94 (832)
.++|+.| .++.++|||++. ++ ....+..|.++|.++.+.|+. .+|+.++.
T Consensus 20 ~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~~~~~------------ 72 (372)
T 1k8k_C 20 RTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDS--------------NRIVTCGT------------ 72 (372)
T ss_dssp SSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEETTT--------------TEEEEEET------------
T ss_pred CCEEEEEeCCCEEEEEeCCC-CcEEeeeeecCCCCcccEEEEeCCC--------------CEEEEEcC------------
Confidence 4566666 666699999986 43 455566789999999998743 24554442
Q ss_pred cccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEe---CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceE
Q 003308 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK---FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE 168 (832)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~---f~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~ 168 (832)
+++|++||+.++++...+. +...|.+++|+ +++|++ +.++.|++||+.+.+..
T Consensus 73 ---------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~ 131 (372)
T 1k8k_C 73 ---------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 131 (372)
T ss_dssp ---------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred ---------------------CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence 1679999999998777665 46789999997 467776 56789999999887642
Q ss_pred EEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccccee
Q 003308 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (832)
Q Consensus 169 ~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~la 248 (832)
..+..... +. ..++ ..|++.. ++.
T Consensus 132 ~~~~~~~~--~~---------~~~i----~~~~~~~---------------------------~~~-------------- 155 (372)
T 1k8k_C 132 WVCKHIKK--PI---------RSTV----LSLDWHP---------------------------NSV-------------- 155 (372)
T ss_dssp EEEEEECT--TC---------CSCE----EEEEECT---------------------------TSS--------------
T ss_pred eeeeeeec--cc---------CCCe----eEEEEcC---------------------------CCC--------------
Confidence 22211100 00 0001 1122221 000
Q ss_pred ceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEEC------------------CC
Q 003308 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDI------------------VS 310 (832)
Q Consensus 249 sGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl------------------~s 310 (832)
.++++..+|.|+|||+ ..
T Consensus 156 --------------------------------------------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (372)
T 1k8k_C 156 --------------------------------------------LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF 191 (372)
T ss_dssp --------------------------------------------EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred --------------------------------------------EEEEEcCCCCEEEEEcccccccccccccccccccch
Confidence 1223456788999995 46
Q ss_pred CcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEcc
Q 003308 311 KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 390 (832)
Q Consensus 311 ~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSp 390 (832)
++++..+.+|..+|.+++|+|+|.+|++++.||+ |++||+.++ ..+..+. ++ ...|.+++|+|
T Consensus 192 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~--------------~~~~~~~-~~-~~~v~~~~~~~ 254 (372)
T 1k8k_C 192 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKK--------------MAVATLA-SE-TLPLLAVTFIT 254 (372)
T ss_dssp TCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGT--------------TEEEEEE-CS-SCCEEEEEEEE
T ss_pred hhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCCC--------------ceeEEEc-cC-CCCeEEEEEec
Confidence 7899999999999999999999999999999987 899999876 3445553 33 34699999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCC
Q 003308 391 DSNWIMISSSRGTSHLFAINPLGG 414 (832)
Q Consensus 391 Dg~~LAsgS~DgTVhIwdl~~~g~ 414 (832)
|+++|+++ .|++|+||++....+
T Consensus 255 ~~~~l~~~-~d~~i~i~~~~~~~~ 277 (372)
T 1k8k_C 255 ESSLVAAG-HDCFPVLFTYDSAAG 277 (372)
T ss_dssp TTEEEEEE-TTSSCEEEEEETTTT
T ss_pred CCCEEEEE-eCCeEEEEEccCcCc
Confidence 99999888 999999999987333
No 67
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.1e-19 Score=195.37 Aligned_cols=240 Identities=10% Similarity=0.121 Sum_probs=168.5
Q ss_pred CcEEEEE-ecCCeEEEEeccC---CCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccC
Q 003308 18 RRVLLLG-YRSGFQVWDVEEA---DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (832)
Q Consensus 18 ~~vLl~G-y~~G~qVWdv~~~---~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~D 93 (832)
..+|+.| .++.++|||+... ......+..|.++|.++++.|.. ..+|+.++.
T Consensus 79 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~~~l~s~~~----------- 134 (416)
T 2pm9_A 79 NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-------------DNVLASGGN----------- 134 (416)
T ss_dssp SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-------------TTBEEEECS-----------
T ss_pred CCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC-------------CCEEEEEcC-----------
Confidence 4445554 5567999999862 23455556789999999998741 123443332
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCc------EEEEE----eCCCCEEEEEEcC---CEEEE-EeCCEEEE
Q 003308 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS------YVHML----KFRSPIYSVRCSS---RVVAI-CQAAQVHC 159 (832)
Q Consensus 94 g~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~------~V~tL----~f~s~V~sV~~S~---r~LAV-a~~~~I~v 159 (832)
+++|++||+++++ ....+ .+...|.+++|++ ++|++ +.++.|++
T Consensus 135 ----------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 192 (416)
T 2pm9_A 135 ----------------------NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI 192 (416)
T ss_dssp ----------------------SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEE
T ss_pred ----------------------CCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEE
Confidence 1679999999987 44333 3467899999974 56776 46789999
Q ss_pred EECCCCceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeee
Q 003308 160 FDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHY 239 (832)
Q Consensus 160 wDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~ 239 (832)
||+.+++.+.++..+....+. ..++ ..+++.. ++..
T Consensus 193 wd~~~~~~~~~~~~~~~~~~~---------~~~v----~~~~~~~---------------------------~~~~---- 228 (416)
T 2pm9_A 193 WDLKAKKEVIHLSYTSPNSGI---------KQQL----SVVEWHP---------------------------KNST---- 228 (416)
T ss_dssp EETTTTEEEEEECCCCCSSCC---------CCCE----EEEEECS---------------------------SCTT----
T ss_pred EECCCCCcceEEecccccccc---------CCce----EEEEECC---------------------------CCCC----
Confidence 999999888777554210000 0001 1223321 0100
Q ss_pred ecccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCC---eEEEEECCCC-cEEE
Q 003308 240 AKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVG---MVIVRDIVSK-NVIA 315 (832)
Q Consensus 240 A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G---~V~IwDl~s~-~~l~ 315 (832)
.++.+..+| .|+|||+.++ +++.
T Consensus 229 -----------------------------------------------------~l~~~~~d~~~~~i~~~d~~~~~~~~~ 255 (416)
T 2pm9_A 229 -----------------------------------------------------RVATATGSDNDPSILIWDLRNANTPLQ 255 (416)
T ss_dssp -----------------------------------------------------EEEEEECCSSSCCCCEEETTSTTSCSB
T ss_pred -----------------------------------------------------EEEEEECCCCCceEEEEeCCCCCCCcE
Confidence 011223344 8999999986 6788
Q ss_pred Eec-cCCCCeEEEEEcC-CCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCC-
Q 003308 316 QFR-AHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS- 392 (832)
Q Consensus 316 ~~~-aH~~pIs~LaFSP-dG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg- 392 (832)
.+. +|..+|.+++|+| +|.+|++++.||+ |+|||+.++ ..+..+. ++. ..|.+++|+||+
T Consensus 256 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~~--------------~~~~~~~-~~~-~~v~~~~~s~~~~ 318 (416)
T 2pm9_A 256 TLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESA--------------EQLSQFP-ARG-NWCFKTKFAPEAP 318 (416)
T ss_dssp CCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSSC--------------CEEEEEE-CSS-SCCCCEEECTTCT
T ss_pred EeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCCC--------------ccceeec-CCC-CceEEEEECCCCC
Confidence 888 9999999999999 9999999999997 899999876 4455553 333 459999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCcee
Q 003308 393 NWIMISSSRGTSHLFAINPLGGSVN 417 (832)
Q Consensus 393 ~~LAsgS~DgTVhIwdl~~~g~~~~ 417 (832)
++|++++.|++|+||++........
T Consensus 319 ~~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 319 DLFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp TEEEECCSSSEEEEEESCCCCCSSC
T ss_pred CEEEEEecCCcEEEEEccCCCCCcc
Confidence 8999999999999999987765443
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.83 E-value=5.4e-18 Score=193.53 Aligned_cols=114 Identities=11% Similarity=0.111 Sum_probs=94.0
Q ss_pred ccccCC-CCeEEEEECCCCcEE-EEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003308 294 FPDADN-VGMVIVRDIVSKNVI-AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (832)
Q Consensus 294 ~~s~~~-~G~V~IwDl~s~~~l-~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l 371 (832)
++.+.. +|.|++||+.+++.. ..+.+|..+|.+++|+|||++||+++.||. |+|||+.++ ..+
T Consensus 459 l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~~~--------------~~~ 523 (615)
T 1pgu_A 459 VAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSR--------------EVK 523 (615)
T ss_dssp EEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT--------------EEE
T ss_pred EEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCCCC--------------cce
Confidence 445556 899999999988766 778899999999999999999999999998 899999876 444
Q ss_pred EEEeccCccccEEEEEEcc----------CCCEEEEEeCCCcEEEEecCCC-CCceeeccCCC
Q 003308 372 YRLQRGLTNAVIQDISFSD----------DSNWIMISSSRGTSHLFAINPL-GGSVNFQPTDA 423 (832)
Q Consensus 372 ~~l~rG~t~a~I~~IaFSp----------Dg~~LAsgS~DgTVhIwdl~~~-g~~~~~~~H~~ 423 (832)
..+ .+.+...|.+++|+| |+++||+++.||+|+||++... .....+.+|..
T Consensus 524 ~~~-~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~ 585 (615)
T 1pgu_A 524 TSR-WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 585 (615)
T ss_dssp ECC-SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT
T ss_pred eEe-ecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCcc
Confidence 444 342345699999999 9999999999999999999886 34455667743
No 69
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.83 E-value=1.7e-18 Score=187.73 Aligned_cols=266 Identities=12% Similarity=0.084 Sum_probs=166.2
Q ss_pred cEEEEE-ecCCeEEEEeccCCCeeEEee--ecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCc
Q 003308 19 RVLLLG-YRSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (832)
Q Consensus 19 ~vLl~G-y~~G~qVWdv~~~~~~~ellS--~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~ 95 (832)
++|+.| .++.++|||+.. +.....+. .|.+.|.++++.|.. ..+|+.++.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~-------------~~~l~s~~~------------- 139 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFNQFN-------------TNQLFVSSI------------- 139 (383)
T ss_dssp TEEEEEEBTSCEEEEETTS-TTCEEEECCCSTTCBEEEEEEETTE-------------EEEEEEEET-------------
T ss_pred CEEEEEcCCCeEEEEeCCC-cccceeeecCCcCCceeEEEeCCCC-------------CCEEEEEeC-------------
Confidence 455555 456699999986 44555554 589999999998721 124544432
Q ss_pred ccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC----CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceE
Q 003308 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF----RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE 168 (832)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f----~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~ 168 (832)
+++|++||+++ +.+..+.. ...|.+++++ .++|++ +.++.|++||+ +++.+
T Consensus 140 --------------------d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~ 197 (383)
T 3ei3_B 140 --------------------RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEI 197 (383)
T ss_dssp --------------------TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEE
T ss_pred --------------------CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEE
Confidence 27899999996 55666643 3679999997 467766 56789999999 57788
Q ss_pred EEEecCCCccCCCCCCCCCcccceeeecc--c-eEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003308 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGP--R-WLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (832)
Q Consensus 169 ~tl~t~~~~~~~p~~~~~~~~~~p~Alg~--r-~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk 245 (832)
.++..|... +..++++| + .|+.++. +..|.-|-....+
T Consensus 198 ~~~~~h~~~------------v~~~~~~~~~~~~l~s~~~---------------------------d~~i~iwd~~~~~ 238 (383)
T 3ei3_B 198 FKEKLHKAK------------VTHAEFNPRCDWLMATSSV---------------------------DATVKLWDLRNIK 238 (383)
T ss_dssp EEEECSSSC------------EEEEEECSSCTTEEEEEET---------------------------TSEEEEEEGGGCC
T ss_pred EEeccCCCc------------EEEEEECCCCCCEEEEEeC---------------------------CCEEEEEeCCCCC
Confidence 888776421 22344444 2 3444321 1122222211100
Q ss_pred ceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCC----
Q 003308 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK---- 321 (832)
Q Consensus 246 ~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~---- 321 (832)
....-+..++... .+. +-.+.|. + | ..++++..+|.|+|||+.+++.+..+..|.
T Consensus 239 ~~~~~~~~~~~~~--~v~--~~~~s~~----------~----~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 239 DKNSYIAEMPHEK--PVN--AAYFNPT----------D----S---TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp STTCEEEEEECSS--CEE--EEEECTT----------T----S---CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred cccceEEEecCCC--ceE--EEEEcCC----------C----C---CEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 0000001111110 000 0001110 1 1 135567789999999999988877777653
Q ss_pred -------------CCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEE
Q 003308 322 -------------SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF 388 (832)
Q Consensus 322 -------------~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaF 388 (832)
..+.+++|+|||++ +++.||+ |+|||+.++ ..+..+........+..++|
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~~--------------~~~~~l~~~~~~~~~~~~~~ 360 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANSG--------------GLVHQLRDPNAAGIISLNKF 360 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTTC--------------CEEEEECBTTBCSCCCEEEE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCCC--------------ceeeeecCCCCCceEEEEEE
Confidence 34556778888877 7888988 899999876 45566643222345777899
Q ss_pred ccCCCEEEEEeCCCcEEEEecCC
Q 003308 389 SDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 389 SpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
+||+++||+++ |++|+||++++
T Consensus 361 s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 361 SPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CTTSSEEEEEE-TTEEEEEECC-
T ss_pred ecCccEEEEec-CCcEEEEecCC
Confidence 99999999997 99999999974
No 70
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.83 E-value=1.1e-18 Score=191.74 Aligned_cols=188 Identities=9% Similarity=0.018 Sum_probs=128.1
Q ss_pred CCCEEEEEEC-CCCcEEEEEeC-CCCEEEEEEcC-----CEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCC
Q 003308 115 VPTVVHFYSL-RSQSYVHMLKF-RSPIYSVRCSS-----RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 186 (832)
Q Consensus 115 ~~~tVrlWDL-~Tg~~V~tL~f-~s~V~sV~~S~-----r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~ 186 (832)
.+++|++|++ .+|+.+.++.. +..+..++|++ .+||. +.|++|+|||+.|+++++++.++.....
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~------- 227 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA------- 227 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C-------
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee-------
Confidence 3589999999 56888888765 45666666653 77777 6789999999999999999986532100
Q ss_pred CcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCcccccccccc
Q 003308 187 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 266 (832)
Q Consensus 187 ~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~ 266 (832)
+-..+||++ +|.++ +.+. .
T Consensus 228 ---------~v~~vafSp---------------------------dG~~l-----------vs~s----~---------- 246 (356)
T 2w18_A 228 ---------SVCHKAYSE---------------------------MGLLF-----------IVLS----H---------- 246 (356)
T ss_dssp ---------CCEEEEEEE---------------------------TTEEE-----------EEEC---------------
T ss_pred ---------eeEEEEECC---------------------------CCCEE-----------EEec----c----------
Confidence 012234542 11111 0000 0
Q ss_pred ccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEe-----ccCCCCeEEEEEcCCCCEEEEEEc
Q 003308 267 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-----RAHKSPISALCFDPSGILLVTASV 341 (832)
Q Consensus 267 ~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~-----~aH~~pIs~LaFSPdG~lLATaS~ 341 (832)
+. + ...++++..|++|++||..+++.+..+ .+|...+.+..|+ |.++|+++.
T Consensus 247 ----~~---------------~--~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~ 303 (356)
T 2w18_A 247 ----PC---------------A--KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILT 303 (356)
T ss_dssp --------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEET
T ss_pred ----CC---------------C--cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcC
Confidence 00 0 012345678899999999999988776 3777665544444 999999999
Q ss_pred CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003308 342 QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (832)
Q Consensus 342 dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl 409 (832)
||+ |+|||+.++ +.+.+| .|++...+..++|||||++||+||.|+||+|||+
T Consensus 304 DgT-IkIWDl~tG--------------k~l~tL-~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 304 SGT-IAIWDLLLG--------------QCTALL-PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TSC-EEEEETTTC--------------SEEEEE-CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCc-EEEEECCCC--------------cEEEEe-cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 998 999999987 566676 4555444557999999999999999999999996
No 71
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.83 E-value=7.1e-19 Score=186.34 Aligned_cols=249 Identities=16% Similarity=0.197 Sum_probs=165.8
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCccc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~ 97 (832)
..+++.+.++.+++||+.........+..|.+.|.++.+.+.- .|.....+|+.++.
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~s~~~~~l~~~~~--------------- 137 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL--------GIGEGAPEIVTGSR--------------- 137 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG--------GCC-CCCEEEEEET---------------
T ss_pred ceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecccc--------ccCCCccEEEEEeC---------------
Confidence 3444555566799999987543566677899999999887521 11122235554442
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEEECCCCc-EEEEEeC-----CCCEEEEEE----c--CCEEEEE-eCCEEEEEECCC
Q 003308 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQS-YVHMLKF-----RSPIYSVRC----S--SRVVAIC-QAAQVHCFDAAT 164 (832)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~-~V~tL~f-----~s~V~sV~~----S--~r~LAVa-~~~~I~vwDl~t 164 (832)
+++|++||+++++ .+..+.. ...|.++.+ + .++|+++ .++.|++||+.+
T Consensus 138 ------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (357)
T 3i2n_A 138 ------------------DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN 199 (357)
T ss_dssp ------------------TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT
T ss_pred ------------------CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc
Confidence 1679999999987 7787764 237999984 3 5677774 568999999999
Q ss_pred CceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccc
Q 003308 165 LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (832)
Q Consensus 165 ~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ss 244 (832)
++..... .+.. ++ .-+++.. . ..++.
T Consensus 200 ~~~~~~~-~~~~---------------~v----~~~~~~~-------------~-----------~~~~~---------- 225 (357)
T 3i2n_A 200 MALRWET-NIKN---------------GV----CSLEFDR-------------K-----------DISMN---------- 225 (357)
T ss_dssp TEEEEEE-ECSS---------------CE----EEEEESC-------------S-----------SSSCC----------
T ss_pred Cceeeec-CCCC---------------ce----EEEEcCC-------------C-----------CCCCC----------
Confidence 8864442 2211 01 1122321 0 00011
Q ss_pred cceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEec-----c
Q 003308 245 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-----A 319 (832)
Q Consensus 245 k~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~-----a 319 (832)
.++.+..+|.|+|||+.+++++..+. +
T Consensus 226 ------------------------------------------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 257 (357)
T 3i2n_A 226 ------------------------------------------------KLVATSLEGKFHVFDMRTQHPTKGFASVSEKA 257 (357)
T ss_dssp ------------------------------------------------EEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred ------------------------------------------------EEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence 12234567899999998876655554 9
Q ss_pred CCCCeEEEEEcCCCC-EEEEEEcCCCEEEEEeCCCCCCCCCC-----ccCCCCceeEEEEEeccCccccEEEEEEccCCC
Q 003308 320 HKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSS-----ACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN 393 (832)
Q Consensus 320 H~~pIs~LaFSPdG~-lLATaS~dGt~I~Iwdi~t~~~~~~s-----~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~ 393 (832)
|..+|.+++|+|+|. +|++++.||. |+|||+......... ..+..+....+..+. ++ ...|.+++|+||++
T Consensus 258 ~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~-~~~v~~~~~s~~~~ 334 (357)
T 3i2n_A 258 HKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT-LS-TQPISSLDWSPDKR 334 (357)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE-CC-SSCEEEEEECSSST
T ss_pred CcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecCCCcccccccCCCCccccccccceeeccc-cC-CCCeeEEEEcCCCC
Confidence 999999999999999 8999999997 999999764210000 000011224455553 44 34699999999999
Q ss_pred EEE-EEeCCCcEEEEecCCC
Q 003308 394 WIM-ISSSRGTSHLFAINPL 412 (832)
Q Consensus 394 ~LA-sgS~DgTVhIwdl~~~ 412 (832)
+|+ +++.||+|+||++...
T Consensus 335 ~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 335 GLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp TEEEEEETTSEEEEEEECC-
T ss_pred eEEEEecCCCcEEEEECCCc
Confidence 999 8999999999999764
No 72
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.82 E-value=9.8e-19 Score=185.53 Aligned_cols=191 Identities=10% Similarity=0.165 Sum_probs=135.5
Q ss_pred CEEEEEECCCCcEEEEEe------CCCCEEEEEEcCC------EEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCC
Q 003308 117 TVVHFYSLRSQSYVHMLK------FRSPIYSVRCSSR------VVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSA 183 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~------f~s~V~sV~~S~r------~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~ 183 (832)
+.|++||+.+++.+..+. +...|++++|++. +|++ +.++.|++||+.+++.+.++..|...
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------ 117 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA------ 117 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSC------
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCc------
Confidence 579999999999888876 3467999999744 6665 57889999999999988888765321
Q ss_pred CCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccc
Q 003308 184 GGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 263 (832)
Q Consensus 184 ~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls 263 (832)
+ ..|+|.. . ++.
T Consensus 118 ---------i----~~~~~~~-------------~-------------~~~----------------------------- 129 (366)
T 3k26_A 118 ---------I----NELKFHP-------------R-------------DPN----------------------------- 129 (366)
T ss_dssp ---------E----EEEEECS-------------S-------------CTT-----------------------------
T ss_pred ---------E----EEEEECC-------------C-------------CCC-----------------------------
Confidence 1 1223321 0 011
Q ss_pred cccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEe---ccCCCCeEEEEEcCCCCEEEEEE
Q 003308 264 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF---RAHKSPISALCFDPSGILLVTAS 340 (832)
Q Consensus 264 ~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~---~aH~~pIs~LaFSPdG~lLATaS 340 (832)
.++++..+|.|+|||+.+++.+..+ .+|..+|.+++|+|+|.+|++++
T Consensus 130 -----------------------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 180 (366)
T 3k26_A 130 -----------------------------LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 180 (366)
T ss_dssp -----------------------------EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE
T ss_pred -----------------------------EEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEec
Confidence 1223456889999999999999998 78999999999999999999999
Q ss_pred cCCCEEEEEeCCCCCCC-------------CCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 003308 341 VQGHNINIFKIIPGILG-------------TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (832)
Q Consensus 341 ~dGt~I~Iwdi~t~~~~-------------~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIw 407 (832)
.||+ |++||+..+... ..............+....++ ...|.+++|+ +++|++++.|++|+||
T Consensus 181 ~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~~~~~d~~i~~w 256 (366)
T 3k26_A 181 MDHS-LKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH-RNYVDCVRWL--GDLILSKSCENAIVCW 256 (366)
T ss_dssp TTSC-EEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC-SSCCCEEEEE--TTEEEEECSSSEEEEE
T ss_pred CCCC-EEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC-cceEEEEEEc--CCEEEEEecCCEEEEE
Confidence 9998 899999864110 000000000000011122223 3459999999 7799999999999999
Q ss_pred ecCCCCC
Q 003308 408 AINPLGG 414 (832)
Q Consensus 408 dl~~~g~ 414 (832)
|+.....
T Consensus 257 d~~~~~~ 263 (366)
T 3k26_A 257 KPGKMED 263 (366)
T ss_dssp EESSTTC
T ss_pred eCCCccc
Confidence 9987654
No 73
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.82 E-value=1.3e-18 Score=217.44 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=92.4
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003308 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (832)
Q Consensus 293 ~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~ 372 (832)
.++.+..+|.|++||+.+++++..+.+|..+|.+++|+|||++||+++.||+ |+|||+.++ ..+.
T Consensus 1057 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~-v~iwd~~~~--------------~~~~ 1121 (1249)
T 3sfz_A 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT-AKIWSFDLL--------------SPLH 1121 (1249)
T ss_dssp EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSC-CCEECSSSS--------------SCSB
T ss_pred cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCc-EEEEECCCc--------------ceee
Confidence 3556778999999999999999999999999999999999999999999998 899999876 1222
Q ss_pred EEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003308 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 373 ~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~ 418 (832)
.+ +++. ..|.+++|||||++||+++.||+|+|||+.++.....+
T Consensus 1122 ~l-~~h~-~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1122 EL-KGHN-GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp CC-CCCS-SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCC
T ss_pred ee-ccCC-CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEe
Confidence 33 3443 45999999999999999999999999999876554443
No 74
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.82 E-value=6.4e-18 Score=200.87 Aligned_cols=239 Identities=14% Similarity=0.128 Sum_probs=179.8
Q ss_pred CCcEEEEEecC-CeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCc
Q 003308 17 TRRVLLLGYRS-GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (832)
Q Consensus 17 ~~~vLl~Gy~~-G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~ 95 (832)
....|+.|..+ .++|||+.. +.....+..|.++|+++.+.|+. .+|++++.
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~--------------~~l~~~~~------------- 75 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYET-QVEVRSIQVTETPVRAGKFIARK--------------NWIIVGSD------------- 75 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGG--------------TEEEEEET-------------
T ss_pred CCCEEEEEeCCCEEEEEECCC-CceEEEEecCCCcEEEEEEeCCC--------------CEEEEEeC-------------
Confidence 35666666655 499999986 55666777899999999999853 25665543
Q ss_pred ccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEe-CCCCEEEEEEcC--CEEEE-EeCCEEEEEECCCC-ceEEE
Q 003308 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS--RVVAI-CQAAQVHCFDAATL-EIEYA 170 (832)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-f~s~V~sV~~S~--r~LAV-a~~~~I~vwDl~t~-~~~~t 170 (832)
+++|++||+.+++.+.++. +...|.+++|++ +.|++ +.++.|++||+.+. .....
T Consensus 76 --------------------dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 76 --------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp --------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred --------------------CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 1789999999999999998 477999999973 56666 56789999999887 45555
Q ss_pred EecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003308 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (832)
Q Consensus 171 l~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasG 250 (832)
+..|.. ++ ..+++.+. ++.
T Consensus 136 ~~~~~~---------------~v----~~~~~~p~--------------------------~~~---------------- 154 (814)
T 3mkq_A 136 FEGHEH---------------FV----MCVAFNPK--------------------------DPS---------------- 154 (814)
T ss_dssp EECCSS---------------CE----EEEEEETT--------------------------EEE----------------
T ss_pred EcCCCC---------------cE----EEEEEEcC--------------------------CCC----------------
Confidence 554421 01 11233210 000
Q ss_pred eeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEE
Q 003308 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-SPISALCF 329 (832)
Q Consensus 251 i~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~-~pIs~LaF 329 (832)
.++++..+|.|++||+.+++....+..|. .+|.+++|
T Consensus 155 ------------------------------------------~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~ 192 (814)
T 3mkq_A 155 ------------------------------------------TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192 (814)
T ss_dssp ------------------------------------------EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEE
T ss_pred ------------------------------------------EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEE
Confidence 12234567899999999988888887665 89999999
Q ss_pred cC--CCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 003308 330 DP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (832)
Q Consensus 330 SP--dG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIw 407 (832)
+| +|.+|++++.||+ |++||+.++ ..+..+ +++. ..|.+++|+||+++|++++.||+|+||
T Consensus 193 ~~~~~~~~l~~~~~dg~-i~~~d~~~~--------------~~~~~~-~~~~-~~v~~~~~~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 193 YPLPDKPYMITASDDLT-IKIWDYQTK--------------SCVATL-EGHM-SNVSFAVFHPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp CCSTTCCEEEEECTTSE-EEEEETTTT--------------EEEEEE-ECCS-SCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred EECCCCCEEEEEeCCCE-EEEEECCCC--------------cEEEEE-cCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 99 9999999999997 999999876 344455 3433 459999999999999999999999999
Q ss_pred ecCCCCCceeeccCCC
Q 003308 408 AINPLGGSVNFQPTDA 423 (832)
Q Consensus 408 dl~~~g~~~~~~~H~~ 423 (832)
++.++.....+..|..
T Consensus 256 d~~~~~~~~~~~~~~~ 271 (814)
T 3mkq_A 256 NSSTYKVEKTLNVGLE 271 (814)
T ss_dssp ETTTCSEEEEECCSSS
T ss_pred ECCCCcEEEEeecCCC
Confidence 9998776677777644
No 75
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.8e-19 Score=206.17 Aligned_cols=240 Identities=13% Similarity=0.082 Sum_probs=158.7
Q ss_pred cEEEE-EecCCeEEEEeccCCCe----------eEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCcc
Q 003308 19 RVLLL-GYRSGFQVWDVEEADNV----------HDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSC 87 (832)
Q Consensus 19 ~vLl~-Gy~~G~qVWdv~~~~~~----------~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g 87 (832)
.+|+. +.++.++|||+...... ...+..|.++|.++.+.|. .+||.++.
T Consensus 226 ~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---------------~~lasgs~----- 285 (524)
T 2j04_B 226 GCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---------------TTVVCGFK----- 285 (524)
T ss_dssp CEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---------------SEEEEEET-----
T ss_pred ceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---------------CeEEEEeC-----
Confidence 45554 55666999999753211 1245568889999888642 13443332
Q ss_pred CccccCCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCc-EEEEEe-CCCCEEEEE--Ec--C-CEEEE-EeCCEEEE
Q 003308 88 GTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS-YVHMLK-FRSPIYSVR--CS--S-RVVAI-CQAAQVHC 159 (832)
Q Consensus 88 ~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~-~V~tL~-f~s~V~sV~--~S--~-r~LAV-a~~~~I~v 159 (832)
+++|++||+++++ .+.++. +...|.+|+ ++ + ++||+ +.|++|+|
T Consensus 286 ----------------------------DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 286 ----------------------------NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp ----------------------------TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred ----------------------------CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 2889999999874 445565 467999994 45 3 67776 57899999
Q ss_pred EECCCCceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeee
Q 003308 160 FDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHY 239 (832)
Q Consensus 160 wDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~ 239 (832)
||+++++++.++.++.... .+ .-++|++ ++.
T Consensus 338 WD~~~~~~~~~~~~~~~~~----------~v-------~~v~fsp---------------------------~~~----- 368 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGS----------NL-------VPVVYCP---------------------------QIY----- 368 (524)
T ss_dssp ECGGGHHHHCEEEEECSCC----------SC-------CCEEEET---------------------------TTT-----
T ss_pred EECCCCCcccccccccccC----------cc-------cceEeCC---------------------------CcC-----
Confidence 9999988776665542100 00 1133431 010
Q ss_pred ecccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEecc
Q 003308 240 AKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA 319 (832)
Q Consensus 240 A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~a 319 (832)
.++++..+++|+|||+.++.++.+|.+
T Consensus 369 -----------------------------------------------------~l~s~~~d~tv~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 369 -----------------------------------------------------SYIYSDGASSLRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp -----------------------------------------------------EEEEECSSSEEEEEETTCTTCCEEEEE
T ss_pred -----------------------------------------------------eEEEeCCCCcEEEEECcccccceeeec
Confidence 122345677999999999999899999
Q ss_pred CCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCC----C---------C-ccCCCCc----------------ee
Q 003308 320 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT----S---------S-ACDAGTS----------------YV 369 (832)
Q Consensus 320 H~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~----~---------s-~~~~~~~----------------~~ 369 (832)
|..+|.+|+|||+|++||+|+.||+ |+|||+....... . + +..+.+. ..
T Consensus 396 H~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~ 474 (524)
T 2j04_B 396 RETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDV 474 (524)
T ss_dssp CSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC------
T ss_pred CCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCc
Confidence 9999999999999999999999998 8999975432110 0 0 0111111 12
Q ss_pred EEEEEeccCccccEEEEEEccCC---CEEEEEeCCCcEEEEecCC
Q 003308 370 HLYRLQRGLTNAVIQDISFSDDS---NWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 370 ~l~~l~rG~t~a~I~~IaFSpDg---~~LAsgS~DgTVhIwdl~~ 411 (832)
.+.++ +|+. ..|++|+||||+ .+||+|+.||+|+||++.-
T Consensus 475 ~~~~l-~gh~-~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 475 SKAKI-DAHG-INITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp --------CC-CSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ceeee-cCCC-ceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 23333 3443 359999999995 4999999999999999853
No 76
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.82 E-value=2.5e-18 Score=181.96 Aligned_cols=181 Identities=14% Similarity=0.232 Sum_probs=129.8
Q ss_pred CEEEEEECCC--CcEEEEEe-CCCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCc--eEEEEecCCCccCCCCCCCC
Q 003308 117 TVVHFYSLRS--QSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGI 186 (832)
Q Consensus 117 ~tVrlWDL~T--g~~V~tL~-f~s~V~sV~~S----~r~LAV-a~~~~I~vwDl~t~~--~~~tl~t~~~~~~~p~~~~~ 186 (832)
++|+|||+.+ ++++.+|. +..+|++|+|+ +++||+ +.|++|++||+.+++ .+.++..|..
T Consensus 31 ~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~---------- 100 (297)
T 2pm7_B 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSA---------- 100 (297)
T ss_dssp SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSS----------
T ss_pred CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCC----------
Confidence 7799999974 46788886 46799999996 467776 568999999998764 3344433311
Q ss_pred CcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCcccccccccc
Q 003308 187 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 266 (832)
Q Consensus 187 ~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~ 266 (832)
++ +.+++..+. .|.
T Consensus 101 -----~v----~~v~~~p~~-------------------------~g~-------------------------------- 114 (297)
T 2pm7_B 101 -----SV----NSVQWAPHE-------------------------YGP-------------------------------- 114 (297)
T ss_dssp -----CE----EEEEECCGG-------------------------GCS--------------------------------
T ss_pred -----ce----eEEEeCcCC-------------------------CCc--------------------------------
Confidence 01 122332100 000
Q ss_pred ccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEEcCC------------
Q 003308 267 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDPS------------ 332 (832)
Q Consensus 267 ~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~--~l~~~~aH~~pIs~LaFSPd------------ 332 (832)
.++++..||.|+|||+.++. ....+.+|...|.+++|+|+
T Consensus 115 --------------------------~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~ 168 (297)
T 2pm7_B 115 --------------------------MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168 (297)
T ss_dssp --------------------------EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----------
T ss_pred --------------------------EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCC
Confidence 12345578999999998763 24677899999999999997
Q ss_pred -CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCC---CEEEEEeCCCcEEEEe
Q 003308 333 -GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS---NWIMISSSRGTSHLFA 408 (832)
Q Consensus 333 -G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg---~~LAsgS~DgTVhIwd 408 (832)
+++||||+.||+ |+|||+..+. .....+..+ +|+. ..|.+|+|+|++ ++||++|.|++|+||+
T Consensus 169 ~~~~l~sgs~D~~-v~lwd~~~~~----------~~~~~~~~l-~~H~-~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 169 ESRKFVTGGADNL-VKIWKYNSDA----------QTYVLESTL-EGHS-DWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp -CCEEEEEETTSC-EEEEEEETTT----------TEEEEEEEE-CCCS-SCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred CcceEEEEcCCCc-EEEEEEcCCC----------ceEEEEEEe-cCCC-CceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 579999999998 9999997641 011233445 4654 469999999995 8999999999999999
Q ss_pred cCCC
Q 003308 409 INPL 412 (832)
Q Consensus 409 l~~~ 412 (832)
+...
T Consensus 236 ~~~~ 239 (297)
T 2pm7_B 236 QDNE 239 (297)
T ss_dssp ESST
T ss_pred eCCC
Confidence 9764
No 77
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.82 E-value=2.2e-18 Score=203.72 Aligned_cols=225 Identities=16% Similarity=0.235 Sum_probs=157.0
Q ss_pred CcEEEE-EecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLL-GYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~-Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
.++|+. +.++.++|||+.. +.....+..|.+.|.++.+.|+. .+|+.++.
T Consensus 442 g~~l~sgs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~--------------~~l~s~s~-------------- 492 (694)
T 3dm0_A 442 GQFALSGSWDGELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDN--------------RQIVSASR-------------- 492 (694)
T ss_dssp SSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTS--------------SCEEEEET--------------
T ss_pred CCEEEEEeCCCcEEEEECCC-CcceeEEeCCCCCEEEEEEeCCC--------------CEEEEEeC--------------
Confidence 444554 4566699999986 45556667799999999998753 13443332
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEe-----CCCCEEEEEEcC----CEEEE-EeCCEEEEEECCCCc
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-----FRSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLE 166 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~-----f~s~V~sV~~S~----r~LAV-a~~~~I~vwDl~t~~ 166 (832)
+++|+|||+.... ...+. +...|.+++|++ ..|++ +.+++|++||+.+.+
T Consensus 493 -------------------D~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~ 552 (694)
T 3dm0_A 493 -------------------DRTIKLWNTLGEC-KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552 (694)
T ss_dssp -------------------TSCEEEECTTSCE-EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred -------------------CCEEEEEECCCCc-ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence 2779999987554 34442 356799999974 34555 678999999999999
Q ss_pred eEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003308 167 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (832)
Q Consensus 167 ~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~ 246 (832)
+..++..|.. ++ ..|+++. +|.
T Consensus 553 ~~~~~~~h~~---------------~v----~~v~~sp---------------------------dg~------------ 574 (694)
T 3dm0_A 553 LRSTLAGHTG---------------YV----STVAVSP---------------------------DGS------------ 574 (694)
T ss_dssp EEEEECCCSS---------------CE----EEEEECT---------------------------TSS------------
T ss_pred EEEEEcCCCC---------------CE----EEEEEeC---------------------------CCC------------
Confidence 8888876632 11 1123321 111
Q ss_pred eeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEE
Q 003308 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA 326 (832)
Q Consensus 247 lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~ 326 (832)
.+++++.||.|+|||+.+++++..+..+ ..|.+
T Consensus 575 ----------------------------------------------~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~ 607 (694)
T 3dm0_A 575 ----------------------------------------------LCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHA 607 (694)
T ss_dssp ----------------------------------------------EEEEEETTSBCEEEETTTTEEEECCBCS-SCEEE
T ss_pred ----------------------------------------------EEEEEeCCCeEEEEECCCCceEEEecCC-CcEEE
Confidence 1233457899999999999998888755 68999
Q ss_pred EEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec------------cC-----ccccEEEEEEc
Q 003308 327 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR------------GL-----TNAVIQDISFS 389 (832)
Q Consensus 327 LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~r------------G~-----t~a~I~~IaFS 389 (832)
++|+|++.+|++++.+ . |+|||+.++ ..+..+.. +. ....+.+++||
T Consensus 608 ~~~sp~~~~l~~~~~~-~-i~iwd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 671 (694)
T 3dm0_A 608 LCFSPNRYWLCAATEH-G-IKIWDLESK--------------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671 (694)
T ss_dssp EEECSSSSEEEEEETT-E-EEEEETTTT--------------EEEEEECCCCC----------------CCCCEEEEEEC
T ss_pred EEEcCCCcEEEEEcCC-C-EEEEECCCC--------------CChhhhccccccccccccccccccCCceeEEeeeEEEc
Confidence 9999999999888765 3 899999876 22222210 00 01127899999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCC
Q 003308 390 DDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 390 pDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
|||++|++|+.||+|+||++..+
T Consensus 672 pdg~~l~sgs~Dg~i~iW~i~~~ 694 (694)
T 3dm0_A 672 ADGSTLFSGYTDGVIRVWGIGRY 694 (694)
T ss_dssp TTSSEEEEEETTSEEEEEEC---
T ss_pred CCCCEEEEEcCCCeEEEEeccCC
Confidence 99999999999999999999653
No 78
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.82 E-value=5.8e-18 Score=188.35 Aligned_cols=227 Identities=12% Similarity=0.180 Sum_probs=167.6
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCccc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~ 97 (832)
..++..+.++.++|||+.. +.....+..|.++|.++.+.+.+. ..+|+.++.
T Consensus 174 ~~l~s~s~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~------------~~~l~s~s~--------------- 225 (464)
T 3v7d_B 174 GILVSGSTDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKN------------IKYIVTGSR--------------- 225 (464)
T ss_dssp TEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEEESSS------------CEEEEEEET---------------
T ss_pred CEEEEEeCCCCEEEEECCC-CcEEEEECCCCCccEEEEEecCCC------------CCEEEEEcC---------------
Confidence 3555555666799999986 556667777999999999986431 124544432
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEEECCCCcE-----------------------EEEEe-CCCCEEEEEEcCCEEEE-E
Q 003308 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSY-----------------------VHMLK-FRSPIYSVRCSSRVVAI-C 152 (832)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~-----------------------V~tL~-f~s~V~sV~~S~r~LAV-a 152 (832)
+++|++||+++++. +..+. +...|.++...+++|++ +
T Consensus 226 ------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 287 (464)
T 3v7d_B 226 ------------------DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 287 (464)
T ss_dssp ------------------TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred ------------------CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe
Confidence 16799999998763 33443 35688888888888777 5
Q ss_pred eCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCC
Q 003308 153 QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN 232 (832)
Q Consensus 153 ~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~ 232 (832)
.++.|++||+.+++++.++..|.. ++ .-+++.. +
T Consensus 288 ~d~~i~vwd~~~~~~~~~~~~~~~---------------~v----~~~~~~~---------------------------~ 321 (464)
T 3v7d_B 288 YDNTLIVWDVAQMKCLYILSGHTD---------------RI----YSTIYDH---------------------------E 321 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSS---------------CE----EEEEEET---------------------------T
T ss_pred CCCeEEEEECCCCcEEEEecCCCC---------------CE----EEEEEcC---------------------------C
Confidence 688999999999998888866531 01 1123321 0
Q ss_pred CcceeeeecccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc
Q 003308 233 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN 312 (832)
Q Consensus 233 g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~ 312 (832)
+. .++++..+|.|+|||+.+++
T Consensus 322 ~~----------------------------------------------------------~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 322 RK----------------------------------------------------------RCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp TT----------------------------------------------------------EEEEEETTSCEEEEETTTTE
T ss_pred CC----------------------------------------------------------EEEEEeCCCcEEEEECCCCc
Confidence 11 12234567899999999999
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCC
Q 003308 313 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 392 (832)
Q Consensus 313 ~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg 392 (832)
++..+++|..+|.+++|+ +.+|++++.||+ |++||+.+. ...+.+.. ...+..++|++++
T Consensus 344 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~~--------------~~~~~~~~---~~~~~~~~~~~~~ 403 (464)
T 3v7d_B 344 LMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDY--------------SRKFSYHH---TNLSAITTFYVSD 403 (464)
T ss_dssp EEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTC--------------CEEEEEEC---TTCCCEEEEEECS
T ss_pred EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCCC--------------ceeeeecC---CCCccEEEEEeCC
Confidence 999999999999999997 689999999997 999999875 33444432 2347789999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCc
Q 003308 393 NWIMISSSRGTSHLFAINPLGGS 415 (832)
Q Consensus 393 ~~LAsgS~DgTVhIwdl~~~g~~ 415 (832)
++|++++ ||+|+|||+.++...
T Consensus 404 ~~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 404 NILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEE
T ss_pred CEEEEec-CCeEEEEECCCCcEE
Confidence 9999999 999999999875433
No 79
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.82 E-value=1.1e-18 Score=191.81 Aligned_cols=110 Identities=12% Similarity=0.160 Sum_probs=84.0
Q ss_pred cccCCCCeEEEEECCCCcE----EEEeccCCC------------CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCC-CCCC
Q 003308 295 PDADNVGMVIVRDIVSKNV----IAQFRAHKS------------PISALCFDPSGILLVTASVQGHNINIFKIIP-GILG 357 (832)
Q Consensus 295 ~s~~~~G~V~IwDl~s~~~----l~~~~aH~~------------pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t-~~~~ 357 (832)
+++..+|.|+|||+.+++. +..|..|.. +|.+|+|+|+|++|++++. |+ |+|||+.. +
T Consensus 243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~--- 317 (447)
T 3dw8_B 243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMEN--- 317 (447)
T ss_dssp EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCS---
T ss_pred EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCc---
Confidence 4456789999999999887 788999886 9999999999999999998 76 99999986 3
Q ss_pred CCCccCCCCceeEEEEEeccCcc-----------c---cEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCC
Q 003308 358 TSSACDAGTSYVHLYRLQRGLTN-----------A---VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (832)
Q Consensus 358 ~~s~~~~~~~~~~l~~l~rG~t~-----------a---~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~ 422 (832)
..+..+ +++.. . .+..++|+||+++|++++.||+|+|||+... ....+..|.
T Consensus 318 -----------~~~~~~-~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~ 383 (447)
T 3dw8_B 318 -----------RPVETY-QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK-RDITLEASR 383 (447)
T ss_dssp -----------SCSCCE-ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC-CEEEEECCS
T ss_pred -----------ccccee-eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC-cceeeeecc
Confidence 111122 12211 0 1345999999999999999999999999874 455666653
No 80
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.82 E-value=5.6e-18 Score=193.40 Aligned_cols=236 Identities=12% Similarity=0.119 Sum_probs=176.4
Q ss_pred CCcEEEEEecCCeEEEEeccCC---CeeEEeeecCCC-EEEEEEec--CCCcccccCCcccccCCEEEEEeCCCCccCcc
Q 003308 17 TRRVLLLGYRSGFQVWDVEEAD---NVHDLVSRYDGP-VSFMQMLP--RPITSKRSRDKFAEVRPLLVFCADGSRSCGTK 90 (832)
Q Consensus 17 ~~~vLl~Gy~~G~qVWdv~~~~---~~~ellS~~dG~-Vr~v~ilp--~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~ 90 (832)
..+.|+.|.++.++|||+++.. .....+..|.+. |.++++.| +. .+||.++.
T Consensus 29 dg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~--------------~~l~s~~~-------- 86 (615)
T 1pgu_A 29 TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS--------------QYLCSGDE-------- 86 (615)
T ss_dssp TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC--------------CEEEEEET--------
T ss_pred CCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCC--------------CEEEEecC--------
Confidence 3677888888889999998631 456666778999 99999987 53 25655442
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCC--------cEEEEEe-CCCCEEEEEEc--CCEEEEEeC-----
Q 003308 91 VQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQ--------SYVHMLK-FRSPIYSVRCS--SRVVAICQA----- 154 (832)
Q Consensus 91 ~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg--------~~V~tL~-f~s~V~sV~~S--~r~LAVa~~----- 154 (832)
+++|++||+.++ +.++++. +..+|.+++|+ +++|+++..
T Consensus 87 -------------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 141 (615)
T 1pgu_A 87 -------------------------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNF 141 (615)
T ss_dssp -------------------------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCS
T ss_pred -------------------------CCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCc
Confidence 278999999865 6777776 47899999997 467777554
Q ss_pred CEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCc
Q 003308 155 AQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS 234 (832)
Q Consensus 155 ~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~ 234 (832)
..|++|| +.+.+..+..|.. ++ ..++|.. ++.
T Consensus 142 ~~v~~~d--~~~~~~~~~~~~~---------------~v----~~~~~~~---------------------------~~~ 173 (615)
T 1pgu_A 142 GVFISWD--SGNSLGEVSGHSQ---------------RI----NACHLKQ---------------------------SRP 173 (615)
T ss_dssp EEEEETT--TCCEEEECCSCSS---------------CE----EEEEECS---------------------------SSS
T ss_pred cEEEEEE--CCCcceeeecCCc---------------cE----EEEEECC---------------------------CCC
Confidence 4888888 5566666554421 01 1123321 010
Q ss_pred ceeeeecccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEE
Q 003308 235 RVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI 314 (832)
Q Consensus 235 ~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l 314 (832)
. .++++..+|.|+|||+.+++++
T Consensus 174 ~---------------------------------------------------------~l~~~~~d~~v~vwd~~~~~~~ 196 (615)
T 1pgu_A 174 M---------------------------------------------------------RSMTVGDDGSVVFYQGPPFKFS 196 (615)
T ss_dssp C---------------------------------------------------------EEEEEETTTEEEEEETTTBEEE
T ss_pred c---------------------------------------------------------EEEEEeCCCcEEEEeCCCccee
Confidence 0 1233456789999999999999
Q ss_pred EEeccCCC---CeEEEEEcCC-CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec---cCccccEEEEE
Q 003308 315 AQFRAHKS---PISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR---GLTNAVIQDIS 387 (832)
Q Consensus 315 ~~~~aH~~---pIs~LaFSPd-G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~r---G~t~a~I~~Ia 387 (832)
..+.+|.. +|.+++|+|+ |++|++++.||. |++||+.++ ..+..+.. ++ ...|.+++
T Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~--------------~~~~~~~~~~~~~-~~~v~~~~ 260 (615)
T 1pgu_A 197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSG--------------EFLKYIEDDQEPV-QGGIFALS 260 (615)
T ss_dssp EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTC--------------CEEEECCBTTBCC-CSCEEEEE
T ss_pred eeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCC--------------CEeEEeccccccc-CCceEEEE
Confidence 99999999 9999999999 999999999998 899999876 44555533 43 34699999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003308 388 FSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (832)
Q Consensus 388 FSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H 421 (832)
|+ |+++|++++.|++|+|||+........+..|
T Consensus 261 ~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 261 WL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp ES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred Ec-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 99 9999999999999999999876666666655
No 81
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.82 E-value=1.3e-18 Score=193.52 Aligned_cols=228 Identities=15% Similarity=0.268 Sum_probs=161.1
Q ss_pred cEEEEE-ecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCccc
Q 003308 19 RVLLLG-YRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (832)
Q Consensus 19 ~vLl~G-y~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~ 97 (832)
..|+.| .++.++|||+.. ++....+..|.+.|.++.+.+ .+|+.++.
T Consensus 184 ~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~----------------~~l~s~s~--------------- 231 (435)
T 1p22_A 184 RVIITGSSDSTVRVWDVNT-GEMLNTLIHHCEAVLHLRFNN----------------GMMVTCSK--------------- 231 (435)
T ss_dssp SEEEEEETTSCEEEEESSS-CCEEEEECCCCSCEEEEECCT----------------TEEEEEET---------------
T ss_pred CEEEEEcCCCeEEEEECCC-CcEEEEEcCCCCcEEEEEEcC----------------CEEEEeeC---------------
Confidence 444554 455699999987 556666667889999888742 14544432
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEE---EEEe-CCCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceEEEEe
Q 003308 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYV---HMLK-FRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (832)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V---~tL~-f~s~V~sV~~S~r~LAV-a~~~~I~vwDl~t~~~~~tl~ 172 (832)
+++|++||+++++.+ ..+. +...|.++.++++.|++ +.++.|++||+.+++++.++.
T Consensus 232 ------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 293 (435)
T 1p22_A 232 ------------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 293 (435)
T ss_dssp ------------------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ------------------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEc
Confidence 167999999998765 3333 46799999999888877 568899999999999988887
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceee
Q 003308 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (832)
Q Consensus 173 t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~ 252 (832)
.+.. ++. .+++.+ .
T Consensus 294 ~~~~---------------~v~----~~~~~~-----------------------------~------------------ 307 (435)
T 1p22_A 294 GHKR---------------GIA----CLQYRD-----------------------------R------------------ 307 (435)
T ss_dssp CCSS---------------CEE----EEEEET-----------------------------T------------------
T ss_pred CCCC---------------cEE----EEEeCC-----------------------------C------------------
Confidence 6532 110 112210 0
Q ss_pred eccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC
Q 003308 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (832)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPd 332 (832)
.++++..+|.|+|||+.+++++..+.+|..+|.+++| +
T Consensus 308 ----------------------------------------~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~ 345 (435)
T 1p22_A 308 ----------------------------------------LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D 345 (435)
T ss_dssp ----------------------------------------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--C
T ss_pred ----------------------------------------EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--c
Confidence 1123456789999999999999999999999999999 8
Q ss_pred CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003308 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 333 G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
|.+|++|+.||+ |+|||+..+...... .....+..+ .++. ..|.+++| |+++|++++.||+|+|||+...
T Consensus 346 ~~~l~sg~~dg~-i~vwd~~~~~~~~~~-----~~~~~~~~~-~~h~-~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 346 NKRIVSGAYDGK-IKVWDLVAALDPRAP-----AGTLCLRTL-VEHS-GRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp SSEEEEEETTSC-EEEEEHHHHTSTTSC-----TTTTEEEEE-CCCS-SCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred CCEEEEEeCCCc-EEEEECCCCCCcccc-----ccchheeec-cCCC-CCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 999999999998 899998654110000 001144455 3443 45999999 8899999999999999999775
Q ss_pred CC
Q 003308 413 GG 414 (832)
Q Consensus 413 g~ 414 (832)
..
T Consensus 416 ~~ 417 (435)
T 1p22_A 416 PA 417 (435)
T ss_dssp --
T ss_pred CC
Confidence 43
No 82
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.82 E-value=9.3e-19 Score=192.03 Aligned_cols=232 Identities=16% Similarity=0.135 Sum_probs=165.8
Q ss_pred EecCCeEEEEeccCCCe---eEEeeecCCCEEEEEEec-CCCcccccCCcccccCCEEEEEeCCCCccCccccCCccccc
Q 003308 24 GYRSGFQVWDVEEADNV---HDLVSRYDGPVSFMQMLP-RPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATAC 99 (832)
Q Consensus 24 Gy~~G~qVWdv~~~~~~---~ellS~~dG~Vr~v~ilp-~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~ 99 (832)
+.++.++|||++..+.. ...+..|.++|.++++.| +. .+|+.++.
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~--------------~~l~s~s~----------------- 102 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND--------------NVIASGSE----------------- 102 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT--------------TEEEEEET-----------------
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC--------------CEEEEEeC-----------------
Confidence 34566999999764332 234557899999999987 32 25665542
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCC-------cEEEEEe-CCCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCce
Q 003308 100 NGTSANYHDLGNGSSVPTVVHFYSLRSQ-------SYVHMLK-FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEI 167 (832)
Q Consensus 100 ~g~~~~~h~~g~~~~~~~tVrlWDL~Tg-------~~V~tL~-f~s~V~sV~~S~---r~LAV-a~~~~I~vwDl~t~~~ 167 (832)
+++|++||+.++ +.+.++. +...|.+|+|++ ++|++ +.++.|++||+.+++.
T Consensus 103 ----------------dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 166 (402)
T 2aq5_A 103 ----------------DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA 166 (402)
T ss_dssp ----------------TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE
T ss_pred ----------------CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc
Confidence 278999999998 6677776 477999999973 46766 5688999999999998
Q ss_pred EEEE--ecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003308 168 EYAI--LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (832)
Q Consensus 168 ~~tl--~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk 245 (832)
+.++ ..|.. ++ ..|++.. ++.
T Consensus 167 ~~~~~~~~~~~---------------~v----~~~~~~~---------------------------~~~----------- 189 (402)
T 2aq5_A 167 VLTLGPDVHPD---------------TI----YSVDWSR---------------------------DGA----------- 189 (402)
T ss_dssp EEEECTTTCCS---------------CE----EEEEECT---------------------------TSS-----------
T ss_pred cEEEecCCCCC---------------ce----EEEEECC---------------------------CCC-----------
Confidence 8887 33321 01 1123321 011
Q ss_pred ceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEe-ccCCCC-
Q 003308 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-RAHKSP- 323 (832)
Q Consensus 246 ~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~-~aH~~p- 323 (832)
.++++..+|.|+|||+.+++++..+ .+|.+.
T Consensus 190 -----------------------------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (402)
T 2aq5_A 190 -----------------------------------------------LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR 222 (402)
T ss_dssp -----------------------------------------------CEEEEETTSEEEEEETTTTEEEEEEECSSCSSS
T ss_pred -----------------------------------------------EEEEEecCCcEEEEeCCCCceeeeeccCCCCCc
Confidence 1233456889999999999999999 799876
Q ss_pred eEEEEEcCCCCEEEEE---EcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEE-Ee
Q 003308 324 ISALCFDPSGILLVTA---SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI-SS 399 (832)
Q Consensus 324 Is~LaFSPdG~lLATa---S~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAs-gS 399 (832)
+.+++|+|+|++|+++ +.||+ |+|||+..... ...+..+ . ....|.+++|+||+++|++ ++
T Consensus 223 ~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~~-----------~~~~~~~--~-~~~~v~~~~~s~~~~~l~~~g~ 287 (402)
T 2aq5_A 223 PVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLEE-----------PLSLQEL--D-TSSGVLLPFFDPDTNIVYLCGK 287 (402)
T ss_dssp CCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCSS-----------CSEEEEC--C-CCSSCEEEEEETTTTEEEEEET
T ss_pred ceEEEEcCCCcEEEEeccCCCCce-EEEEcCccccC-----------CceEEec--c-CCCceeEEEEcCCCCEEEEEEc
Confidence 8999999999999999 68876 99999987510 0122222 2 2235899999999999975 45
Q ss_pred CCCcEEEEecCCCCC-ceeeccC
Q 003308 400 SRGTSHLFAINPLGG-SVNFQPT 421 (832)
Q Consensus 400 ~DgTVhIwdl~~~g~-~~~~~~H 421 (832)
.||+|+||++..... ...+..|
T Consensus 288 ~dg~i~i~d~~~~~~~~~~l~~~ 310 (402)
T 2aq5_A 288 GDSSIRYFEITSEAPFLHYLSMF 310 (402)
T ss_dssp TCSCEEEEEECSSTTCEEEEEEE
T ss_pred CCCeEEEEEecCCCcceEeeccc
Confidence 799999999987653 3344443
No 83
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.5e-19 Score=206.47 Aligned_cols=225 Identities=12% Similarity=0.086 Sum_probs=156.4
Q ss_pred ecCCeEEEEeccCCCee----EEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccC
Q 003308 25 YRSGFQVWDVEEADNVH----DLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACN 100 (832)
Q Consensus 25 y~~G~qVWdv~~~~~~~----ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~ 100 (832)
+++.++|||++. ++.. ..+..|.+.|..+++.|.... .....+||.++.
T Consensus 181 ~D~tI~iWd~~~-~~~~~~~~~~l~~~~~~V~~v~wsp~~~~--------~~~~~~LAs~s~------------------ 233 (524)
T 2j04_B 181 HSSCIQIFKMNT-STLHCVKVQTIVHSFGEVWDLKWHEGCHA--------PHLVGCLSFVSQ------------------ 233 (524)
T ss_dssp -CEEEEEEEEET-TTCCEEEEEEEEECCCSEEEEEECSSCCC--------SSSSCEEEEEET------------------
T ss_pred CCceEEEEEccC-CCCCceEEEEEEecCCcEEEEEECCCCCC--------CCCCceEEEEec------------------
Confidence 344589999986 3331 234556799999999985211 111236665543
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCcE-----------EEEEeC-CCCEEEEEEc-CCEEEE-EeCCEEEEEECCCCc
Q 003308 101 GTSANYHDLGNGSSVPTVVHFYSLRSQSY-----------VHMLKF-RSPIYSVRCS-SRVVAI-CQAAQVHCFDAATLE 166 (832)
Q Consensus 101 g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~-----------V~tL~f-~s~V~sV~~S-~r~LAV-a~~~~I~vwDl~t~~ 166 (832)
+++|+|||+.++++ ..++.. ...|.+++|+ ...||+ +.|++|++||+.+.+
T Consensus 234 ---------------DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~ 298 (524)
T 2j04_B 234 ---------------EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE 298 (524)
T ss_dssp ---------------TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS
T ss_pred ---------------CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC
Confidence 27899999987742 124543 5789999996 356666 678999999999764
Q ss_pred e-EEEEecCCCccCCCCCCCCCcccceeeeccceE--EeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccc
Q 003308 167 I-EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWL--AYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKES 243 (832)
Q Consensus 167 ~-~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~L--Aya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~s 243 (832)
. ..++..|.. ++ +-| +|+. +|.
T Consensus 299 ~~~~~~~~H~~---------------~V----~sv~~~~s~---------------------------~g~--------- 323 (524)
T 2j04_B 299 VPSFYDQVHDS---------------YI----LSVSTAYSD---------------------------FED--------- 323 (524)
T ss_dssp SCSEEEECSSS---------------CE----EEEEEECCT---------------------------TSC---------
T ss_pred CceEEeecccc---------------cE----EEEEEEcCC---------------------------CCC---------
Confidence 3 344444421 11 011 1110 000
Q ss_pred ccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCC-
Q 003308 244 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKS- 322 (832)
Q Consensus 244 sk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~- 322 (832)
..+++++.||+|+|||+.+++++..+.+|..
T Consensus 324 ------------------------------------------------~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~ 355 (524)
T 2j04_B 324 ------------------------------------------------TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG 355 (524)
T ss_dssp ------------------------------------------------CEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred ------------------------------------------------eEEEEeccCCeEEEEECCCCCccccccccccc
Confidence 0134566789999999999888888888864
Q ss_pred -CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCC
Q 003308 323 -PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (832)
Q Consensus 323 -pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~D 401 (832)
.|.+|+|+|+|+.||+++.|++ |+|||++.+ ..+..+. |+. ..|++|+|||||++||+|+.|
T Consensus 356 ~~v~~v~fsp~~~~l~s~~~d~t-v~lwd~~~~--------------~~~~~l~-gH~-~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 356 SNLVPVVYCPQIYSYIYSDGASS-LRAVPSRAA--------------FAVHPLV-SRE-TTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp CSCCCEEEETTTTEEEEECSSSE-EEEEETTCT--------------TCCEEEE-ECS-SCEEEEECCSSCCBCEEEETT
T ss_pred CcccceEeCCCcCeEEEeCCCCc-EEEEECccc--------------ccceeee-cCC-CceEEEEeCCCCCeEEEEECC
Confidence 5889999999999999999987 999999876 2223443 443 469999999999999999999
Q ss_pred CcEEEEecCC
Q 003308 402 GTSHLFAINP 411 (832)
Q Consensus 402 gTVhIwdl~~ 411 (832)
|+|+||++..
T Consensus 419 gtv~lwd~~~ 428 (524)
T 2j04_B 419 GSLIITNAAR 428 (524)
T ss_dssp TEEECCBSCS
T ss_pred CEEEEEechH
Confidence 9999999853
No 84
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.81 E-value=2.6e-18 Score=181.67 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=86.7
Q ss_pred cCCCCeEEEEECCC-Cc--EEEEeccCCCCeEEEEEcC-CCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003308 297 ADNVGMVIVRDIVS-KN--VIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (832)
Q Consensus 297 ~~~~G~V~IwDl~s-~~--~l~~~~aH~~pIs~LaFSP-dG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~ 372 (832)
+..+|.|++||+.+ +. .......|..+|.+++|+| +|.+|++++.||. |+||++....... .......+
T Consensus 166 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~------~~~~~~~~ 238 (342)
T 1yfq_A 166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDY------NSSKRFAF 238 (342)
T ss_dssp EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCST------TCTTCEEE
T ss_pred EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCccc------ccccceee
Confidence 45678999999998 54 3345557889999999999 9999999999997 8999987630000 00112222
Q ss_pred EEecc-----CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003308 373 RLQRG-----LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (832)
Q Consensus 373 ~l~rG-----~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H 421 (832)
..++. .+...|.+++|+||+++|++++.||+|+|||+........+..|
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 22211 01236999999999999999999999999999887666666666
No 85
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.81 E-value=8.2e-19 Score=193.67 Aligned_cols=115 Identities=19% Similarity=0.260 Sum_probs=96.7
Q ss_pred ccccCCCCeEEEEECCCCcEEEEecc--CCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003308 294 FPDADNVGMVIVRDIVSKNVIAQFRA--HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (832)
Q Consensus 294 ~~s~~~~G~V~IwDl~s~~~l~~~~a--H~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l 371 (832)
++++..+|.|+|||+.+++++..+.. |..+|.+|+|+|+|.+||+|+.||+ |+|||+..+ ..+
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~--------------~~~ 249 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIRFN--------------VLI 249 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEETTTT--------------EEE
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEcCCc--------------cEE
Confidence 34566789999999999999999998 8999999999999999999999998 899999876 455
Q ss_pred EEEeccCccccEEEEEE----ccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCC
Q 003308 372 YRLQRGLTNAVIQDISF----SDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (832)
Q Consensus 372 ~~l~rG~t~a~I~~IaF----SpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~~~ 424 (832)
..+..++. ..|.+++| +||+++|++++.||+|+|||+........+.+|...
T Consensus 250 ~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 305 (437)
T 3gre_A 250 RSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ 305 (437)
T ss_dssp EEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSC
T ss_pred EEEecCCC-CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCC
Confidence 55543333 36999955 467889999999999999999988777788887543
No 86
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=8.3e-18 Score=188.04 Aligned_cols=177 Identities=14% Similarity=0.179 Sum_probs=129.2
Q ss_pred CCEEEEEECC--CCcEEEEEe---CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEE----EEecCCCccCCCCC
Q 003308 116 PTVVHFYSLR--SQSYVHMLK---FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEY----AILTNPIVMGHPSA 183 (832)
Q Consensus 116 ~~tVrlWDL~--Tg~~V~tL~---f~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~----tl~t~~~~~~~p~~ 183 (832)
+++|++||+. ++++++.+. +...|.+|+|+ +++|++ +.++.|++||+.+++... ++..|..
T Consensus 124 dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~------- 196 (450)
T 2vdu_B 124 DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVS------- 196 (450)
T ss_dssp GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSS-------
T ss_pred CCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccC-------
Confidence 4889999999 899998884 57899999997 467776 457899999998776432 2222210
Q ss_pred CCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccc
Q 003308 184 GGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 263 (832)
Q Consensus 184 ~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls 263 (832)
++ ..|+++.+. ..+.
T Consensus 197 --------~v----~~~~~sp~~------------------------~~~~----------------------------- 211 (450)
T 2vdu_B 197 --------ML----TDVHLIKDS------------------------DGHQ----------------------------- 211 (450)
T ss_dssp --------CE----EEEEEEECT------------------------TSCE-----------------------------
T ss_pred --------ce----EEEEEcCCC------------------------CCCc-----------------------------
Confidence 01 122332100 0000
Q ss_pred cccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEEcC
Q 003308 264 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQ 342 (832)
Q Consensus 264 ~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~-~~aH~~pIs~LaFSPdG~lLATaS~d 342 (832)
.++++..+|.|+|||+.+++++.. +.+|..+|.+++|+ ||++|++++.|
T Consensus 212 -----------------------------~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d 261 (450)
T 2vdu_B 212 -----------------------------FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD 261 (450)
T ss_dssp -----------------------------EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred -----------------------------EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence 123345678999999999998887 55999999999999 99999999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecc-----------------------CccccEEEEEEccCCCEEEEEe
Q 003308 343 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG-----------------------LTNAVIQDISFSDDSNWIMISS 399 (832)
Q Consensus 343 Gt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG-----------------------~t~a~I~~IaFSpDg~~LAsgS 399 (832)
|+ |+|||+.++ ..+..+..+ .....|.+|+|+||+++|++++
T Consensus 262 ~~-v~vwd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 262 DK-IFAWDWKTG--------------KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp SE-EEEEETTTC--------------CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred Ce-EEEEECCCC--------------cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 87 999999886 233333211 1123489999999999999999
Q ss_pred -CCCcEEEEec
Q 003308 400 -SRGTSHLFAI 409 (832)
Q Consensus 400 -~DgTVhIwdl 409 (832)
.|++|+||++
T Consensus 327 ~~d~~i~iw~~ 337 (450)
T 2vdu_B 327 EATKCIIILEM 337 (450)
T ss_dssp TTCSEEEEEEE
T ss_pred CCCCeEEEEEe
Confidence 8999999999
No 87
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.81 E-value=1.4e-19 Score=195.21 Aligned_cols=200 Identities=10% Similarity=0.104 Sum_probs=130.4
Q ss_pred CEEEEEECCCC--cEEEEEeC-CCCEEEEEEcC--CEEEE-EeCCEEEEEECCCCc---eEEEEecCCCccCCCCCCCCC
Q 003308 117 TVVHFYSLRSQ--SYVHMLKF-RSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLE---IEYAILTNPIVMGHPSAGGIG 187 (832)
Q Consensus 117 ~tVrlWDL~Tg--~~V~tL~f-~s~V~sV~~S~--r~LAV-a~~~~I~vwDl~t~~---~~~tl~t~~~~~~~p~~~~~~ 187 (832)
++|+|||+.++ +++.++.. ...|.+++|++ ++|++ +.+++|++||+.+++ ....+..|..
T Consensus 33 ~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~----------- 101 (377)
T 3dwl_C 33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR----------- 101 (377)
T ss_dssp SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS-----------
T ss_pred CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC-----------
Confidence 67999999998 67777764 67999999974 56666 568899999999876 3333322210
Q ss_pred cccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccc
Q 003308 188 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 267 (832)
Q Consensus 188 ~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~ 267 (832)
++ ..+++.. ++.
T Consensus 102 ----~v----~~~~~~~---------------------------~~~--------------------------------- 113 (377)
T 3dwl_C 102 ----AA----TFVRWSP---------------------------NED--------------------------------- 113 (377)
T ss_dssp ----CE----EEEECCT---------------------------TSS---------------------------------
T ss_pred ----ce----EEEEECC---------------------------CCC---------------------------------
Confidence 01 1122210 000
Q ss_pred cccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc---EEEEecc-CCCCeEEEEEcCCCCEEEEEEcCC
Q 003308 268 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN---VIAQFRA-HKSPISALCFDPSGILLVTASVQG 343 (832)
Q Consensus 268 ~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~---~l~~~~a-H~~pIs~LaFSPdG~lLATaS~dG 343 (832)
.++++..+|.|+|||+.+++ ++..+.. |..+|.+|+|+|+|++||+++.||
T Consensus 114 -------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 168 (377)
T 3dwl_C 114 -------------------------KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR 168 (377)
T ss_dssp -------------------------CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred -------------------------EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence 12344568899999999887 4778887 999999999999999999999999
Q ss_pred CEEEEEeCCCCCCCCCC----ccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC----c
Q 003308 344 HNINIFKIIPGILGTSS----ACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG----S 415 (832)
Q Consensus 344 t~I~Iwdi~t~~~~~~s----~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~----~ 415 (832)
+ |+|||+......... ..........+..+ ++ ...|.+++|+||+++||+++.||+|+|||+..... .
T Consensus 169 ~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 244 (377)
T 3dwl_C 169 K-AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PS-GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL 244 (377)
T ss_dssp C-EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CC-SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred E-EEEEEEEecccCCCccccccccccchhhhhhcc--cC-CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence 8 899998643100000 00000112333343 43 34599999999999999999999999999998776 5
Q ss_pred eeeccCCCC
Q 003308 416 VNFQPTDAN 424 (832)
Q Consensus 416 ~~~~~H~~~ 424 (832)
..+.+|...
T Consensus 245 ~~~~~~~~~ 253 (377)
T 3dwl_C 245 ITVKLSQLP 253 (377)
T ss_dssp CCEECSSSC
T ss_pred EeecCCCCc
Confidence 566777553
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.81 E-value=2.4e-19 Score=193.39 Aligned_cols=229 Identities=14% Similarity=0.114 Sum_probs=148.1
Q ss_pred CcEEEEE-ecCCeEEEEeccCC-CeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCc
Q 003308 18 RRVLLLG-YRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (832)
Q Consensus 18 ~~vLl~G-y~~G~qVWdv~~~~-~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~ 95 (832)
.++|+.| .++.++|||+.... .....+..|.++|.++++.|+. .+|+.++.
T Consensus 23 g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--------------~~l~s~s~------------- 75 (377)
T 3dwl_C 23 RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS--------------NRIVTCSQ------------- 75 (377)
T ss_dssp SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT--------------CCEEEEET-------------
T ss_pred CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC--------------CEEEEEeC-------------
Confidence 4566666 66679999998632 4455566789999999998752 24554442
Q ss_pred ccccCCCCCCCCCCCCCCCCCCEEEEEECCCCc---EEEEE-eCCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCce-
Q 003308 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS---YVHML-KFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEI- 167 (832)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~---~V~tL-~f~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~- 167 (832)
+++|++||+.+++ .+..+ .+...|.+++|+ +++|++ +.++.|++||+.+.+.
T Consensus 76 --------------------d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 135 (377)
T 3dwl_C 76 --------------------DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW 135 (377)
T ss_dssp --------------------TSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred --------------------CCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence 1679999999987 44443 357799999997 455665 6788999999998763
Q ss_pred --EEEEec-CCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccc
Q 003308 168 --EYAILT-NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (832)
Q Consensus 168 --~~tl~t-~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ss 244 (832)
...+.. |.. ++ ..|+|.. ++.
T Consensus 136 ~~~~~~~~~h~~---------------~v----~~~~~~~---------------------------~~~---------- 159 (377)
T 3dwl_C 136 WVSKHLKRPLRS---------------TI----LSLDWHP---------------------------NNV---------- 159 (377)
T ss_dssp CCCEEECSSCCS---------------CE----EEEEECT---------------------------TSS----------
T ss_pred eeeeEeecccCC---------------Ce----EEEEEcC---------------------------CCC----------
Confidence 444443 211 01 1122321 011
Q ss_pred cceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECC---------------
Q 003308 245 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV--------------- 309 (832)
Q Consensus 245 k~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~--------------- 309 (832)
.++++..+|.|+|||+.
T Consensus 160 ------------------------------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 191 (377)
T 3dwl_C 160 ------------------------------------------------LLAAGCADRKAYVLSAYVRDVDAKPEASVWGS 191 (377)
T ss_dssp ------------------------------------------------EEEEEESSSCEEEEEECCSSCC-CCCSCSSCS
T ss_pred ------------------------------------------------EEEEEeCCCEEEEEEEEecccCCCcccccccc
Confidence 12234567889999984
Q ss_pred ---CCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEE
Q 003308 310 ---SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDI 386 (832)
Q Consensus 310 ---s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~I 386 (832)
.++++..+ .|..+|.+++|+|+|++||+++.||+ |+|||+.++.. ....+..+ .++ ...|.++
T Consensus 192 ~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~----------~~~~~~~~-~~~-~~~v~~~ 257 (377)
T 3dwl_C 192 RLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSAPEQ----------PPRALITV-KLS-QLPLRSL 257 (377)
T ss_dssp CCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECSTTS----------CEEECCCE-ECS-SSCEEEE
T ss_pred ccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCCCCC----------cceeeEee-cCC-CCceEEE
Confidence 35677777 99999999999999999999999997 99999987611 01113333 233 3459999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCC
Q 003308 387 SFSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 387 aFSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
+|+||+++|++++.++.+ +|+....
T Consensus 258 ~~s~~~~~l~~~~~~~~~-~~~~~~~ 282 (377)
T 3dwl_C 258 LWANESAIVAAGYNYSPI-LLQGNES 282 (377)
T ss_dssp EEEETTEEEEEESSSSEE-EECCCC-
T ss_pred EEcCCCCEEEEEcCCcEE-EEEeCCC
Confidence 999999999999866665 8877643
No 89
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.80 E-value=2e-18 Score=184.58 Aligned_cols=209 Identities=12% Similarity=0.156 Sum_probs=143.5
Q ss_pred eEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCCCCCEEE
Q 003308 41 HDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVH 120 (832)
Q Consensus 41 ~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVr 120 (832)
+.++..|.++|.++++.|++ .+||.++. +++|+
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g--------------~~lasgs~---------------------------------D~~v~ 38 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYG--------------TRLATCSS---------------------------------DRSVK 38 (316)
T ss_dssp --------CCEEEEEECGGG--------------CEEEEEET---------------------------------TTEEE
T ss_pred eeecccccCeEEEeeEcCCC--------------CEEEEEeC---------------------------------CCeEE
Confidence 34556799999999998743 24554442 27899
Q ss_pred EEECCCCc--EEEEEe-CCCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCc--eEEEEecCCCccCCCCCCCCCccc
Q 003308 121 FYSLRSQS--YVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGIGY 190 (832)
Q Consensus 121 lWDL~Tg~--~V~tL~-f~s~V~sV~~S----~r~LAV-a~~~~I~vwDl~t~~--~~~tl~t~~~~~~~p~~~~~~~~~ 190 (832)
|||+++++ ++.+|+ +..+|++|+|+ +++||+ +.|++|++||+.+++ +..++..|... +
T Consensus 39 lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~------------V 106 (316)
T 3bg1_A 39 IFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS------------V 106 (316)
T ss_dssp EEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC------------C
T ss_pred EEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc------------e
Confidence 99999885 456665 46799999995 456666 578999999999864 44555444210 1
Q ss_pred ceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCcccccccccccccc
Q 003308 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (832)
Q Consensus 191 ~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~ 270 (832)
+-++|.++. .+.
T Consensus 107 -------~~v~~~p~~-------------------------~g~------------------------------------ 118 (316)
T 3bg1_A 107 -------NSVCWAPHD-------------------------YGL------------------------------------ 118 (316)
T ss_dssp -------CEEEECCTT-------------------------TCS------------------------------------
T ss_pred -------EEEEECCCC-------------------------CCc------------------------------------
Confidence 112332100 000
Q ss_pred CCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc---EEEEeccCCCCeEEEEEcCC---------------
Q 003308 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN---VIAQFRAHKSPISALCFDPS--------------- 332 (832)
Q Consensus 271 p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~---~l~~~~aH~~pIs~LaFSPd--------------- 332 (832)
.++++..||.|+|||+.++. ....+.+|..+|.+++|+|+
T Consensus 119 ----------------------~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 176 (316)
T 3bg1_A 119 ----------------------ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKP 176 (316)
T ss_dssp ----------------------CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCC
T ss_pred ----------------------EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCc
Confidence 12345678999999998763 24566799999999999998
Q ss_pred --CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCC----CEEEEEeCCCcEEE
Q 003308 333 --GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS----NWIMISSSRGTSHL 406 (832)
Q Consensus 333 --G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg----~~LAsgS~DgTVhI 406 (832)
+++||+|+.||+ |+|||+.... ....+..+ +++. ..|.+++|+|++ ++||+++.|++|+|
T Consensus 177 ~~~~~l~sgs~D~~-v~lWd~~~~~-----------~~~~~~~l-~~h~-~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 177 NYIKRFASGGCDNL-IKLWKEEEDG-----------QWKEEQKL-EAHS-DWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp CCCCBEECCBTTSB-CCEEEECTTS-----------CEEEEECC-BCCS-SCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred cccceEEEecCCCe-EEEEEeCCCC-----------ccceeeec-ccCC-CceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 579999999998 8999986430 11233344 4554 459999999997 89999999999999
Q ss_pred EecCCC
Q 003308 407 FAINPL 412 (832)
Q Consensus 407 wdl~~~ 412 (832)
|++...
T Consensus 243 w~~~~~ 248 (316)
T 3bg1_A 243 WTCDDA 248 (316)
T ss_dssp EECSST
T ss_pred EEccCc
Confidence 999763
No 90
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.6e-18 Score=188.26 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=94.2
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccC------CCCeEEEEEcCCC-CEEEEEEcCC---CEEEEEeCCCCCCCCCCccCC
Q 003308 295 PDADNVGMVIVRDIVSKNVIAQFRAH------KSPISALCFDPSG-ILLVTASVQG---HNINIFKIIPGILGTSSACDA 364 (832)
Q Consensus 295 ~s~~~~G~V~IwDl~s~~~l~~~~aH------~~pIs~LaFSPdG-~lLATaS~dG---t~I~Iwdi~t~~~~~~s~~~~ 364 (832)
+++..+|.|+|||+.+++++..+..| ..+|.+++|+|+| .+|++++.|| + |++||+..+.
T Consensus 182 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~-i~~~d~~~~~--------- 251 (416)
T 2pm9_A 182 ASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS-ILIWDLRNAN--------- 251 (416)
T ss_dssp EEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC-CCEEETTSTT---------
T ss_pred EEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce-EEEEeCCCCC---------
Confidence 44567899999999999999999877 7899999999998 6999999998 7 8999998741
Q ss_pred CCceeEEEEEeccCccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCc
Q 003308 365 GTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 425 (832)
Q Consensus 365 ~~~~~~l~~l~rG~t~a~I~~IaFSp-Dg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~~~~ 425 (832)
..+..+..++. ..|.+++|+| |+++|++++.||+|+|||+........+..|....
T Consensus 252 ----~~~~~~~~~~~-~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v 308 (416)
T 2pm9_A 252 ----TPLQTLNQGHQ-KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308 (416)
T ss_dssp ----SCSBCCCSCCS-SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCC
T ss_pred ----CCcEEeecCcc-CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCce
Confidence 11112221433 4599999999 99999999999999999999877777888875433
No 91
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.8e-17 Score=168.41 Aligned_cols=210 Identities=12% Similarity=0.130 Sum_probs=153.0
Q ss_pred CeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCCCCCE
Q 003308 39 NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTV 118 (832)
Q Consensus 39 ~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~t 118 (832)
.....+..|.++|.++++ |+. .+|+.++. +++
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~--------------~~l~s~~~---------------------------------dg~ 40 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDD--------------SKVASVSR---------------------------------DGT 40 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EET--------------TEEEEEET---------------------------------TSE
T ss_pred HHHHHhhCCCCCcEEEEe-cCC--------------CEEEEEEc---------------------------------CCc
Confidence 345566779999999998 632 24554442 278
Q ss_pred EEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCc---eEEEEecCCCccCCCCCCCCCcccc
Q 003308 119 VHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLE---IEYAILTNPIVMGHPSAGGIGIGYG 191 (832)
Q Consensus 119 VrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~---~~~tl~t~~~~~~~p~~~~~~~~~~ 191 (832)
|++||+.+++.+..+.. ...|.+++|+ +++|++ +.++.|++||+.+.. .+..+..+..
T Consensus 41 v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~--------------- 105 (313)
T 3odt_A 41 VRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG--------------- 105 (313)
T ss_dssp EEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS---------------
T ss_pred EEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc---------------
Confidence 99999999998888865 7899999997 466666 578899999987643 2233322210
Q ss_pred eeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccC
Q 003308 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (832)
Q Consensus 192 p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p 271 (832)
++ .-+++.+
T Consensus 106 ~i----~~~~~~~------------------------------------------------------------------- 114 (313)
T 3odt_A 106 NV----CSLSFQD------------------------------------------------------------------- 114 (313)
T ss_dssp CE----EEEEEET-------------------------------------------------------------------
T ss_pred CE----EEEEecC-------------------------------------------------------------------
Confidence 00 0011100
Q ss_pred CCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEEcCCCEEEEEe
Q 003308 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFK 350 (832)
Q Consensus 272 ~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSP-dG~lLATaS~dGt~I~Iwd 350 (832)
..++++..+|.|++|| .++.+..+..|..+|.+++|+| ++.+|++++.||. |++||
T Consensus 115 --------------------~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~i~d 171 (313)
T 3odt_A 115 --------------------GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT-IKLWQ 171 (313)
T ss_dssp --------------------TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC-EEEEE
T ss_pred --------------------CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC-EEEEe
Confidence 0123345688999999 7788899999999999999988 9999999999998 89999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCC
Q 003308 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (832)
Q Consensus 351 i~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~~ 423 (832)
... .+..+ .+.....|.+++|+|+++ |++++.||+|+|||+........+..|..
T Consensus 172 ~~~----------------~~~~~-~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 226 (313)
T 3odt_A 172 NDK----------------VIKTF-SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES 226 (313)
T ss_dssp TTE----------------EEEEE-CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred cCc----------------eEEEE-eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc
Confidence 432 33344 333345699999999998 89999999999999998776777777754
No 92
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4.4e-18 Score=183.18 Aligned_cols=104 Identities=11% Similarity=0.136 Sum_probs=79.4
Q ss_pred ccCCCCeEEEEECCCCcEE-EEecc-CCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003308 296 DADNVGMVIVRDIVSKNVI-AQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (832)
Q Consensus 296 s~~~~G~V~IwDl~s~~~l-~~~~a-H~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~ 373 (832)
++..+|.|+|||+.+++.+ ..|+. |..+|.+|+|+|+|.+||+++ +++ |+|||++....- ..+..
T Consensus 187 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~-v~iwd~~~~~~~-----------~~~~~ 253 (343)
T 3lrv_A 187 LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQT-VVCFDLRKDVGT-----------LAYPT 253 (343)
T ss_dssp EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSB-EEEEETTSSTTC-----------BSSCC
T ss_pred EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCe-EEEEEcCCCCcc-----------eeecc
Confidence 3457889999999999887 88998 999999999999999999999 445 999999875110 00000
Q ss_pred EeccCccccE--EEEEEccCCCEEEEEeC-CCcEEEEecCCCCC
Q 003308 374 LQRGLTNAVI--QDISFSDDSNWIMISSS-RGTSHLFAINPLGG 414 (832)
Q Consensus 374 l~rG~t~a~I--~~IaFSpDg~~LAsgS~-DgTVhIwdl~~~g~ 414 (832)
+. ++ ...+ .+++|+|+|++||+++. |++++||++.....
T Consensus 254 ~~-~~-~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 254 YT-IP-EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp CB-C------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred cc-cc-cccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 00 00 0112 46999999999999999 99999999976543
No 93
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.80 E-value=9.9e-18 Score=177.55 Aligned_cols=244 Identities=11% Similarity=0.106 Sum_probs=164.2
Q ss_pred CcEEEEEe----cCCeEEEEeccCCCeeEEe-eecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCcccc
Q 003308 18 RRVLLLGY----RSGFQVWDVEEADNVHDLV-SRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (832)
Q Consensus 18 ~~vLl~Gy----~~G~qVWdv~~~~~~~ell-S~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~ 92 (832)
..+++.|. ++.++|||+.. +....+. ..|.++|.++++.|... ...+|+.++.
T Consensus 31 ~~l~~~~s~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-----------~~~~l~~~~~---------- 88 (357)
T 3i2n_A 31 AKFVTMGNFARGTGVIQLYEIQH-GDLKLLREIEKAKPIKCGTFGATSL-----------QQRYLATGDF---------- 88 (357)
T ss_dssp SEEEEEEC--CCCEEEEEEEECS-SSEEEEEEEEESSCEEEEECTTCCT-----------TTCCEEEEET----------
T ss_pred ceEEEecCccCCCcEEEEEeCCC-CcccceeeecccCcEEEEEEcCCCC-----------CCceEEEecC----------
Confidence 35666664 56699999987 3443333 36889999999987410 0124554442
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCc-EEEEEe-CCCCEEEEEE------c--CCEEEE-EeCCEEEEEE
Q 003308 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS-YVHMLK-FRSPIYSVRC------S--SRVVAI-CQAAQVHCFD 161 (832)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~-~V~tL~-f~s~V~sV~~------S--~r~LAV-a~~~~I~vwD 161 (832)
+++|++||+.+++ .+..+. +...|.++.+ + +++|++ +.++.|++||
T Consensus 89 -----------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd 145 (357)
T 3i2n_A 89 -----------------------GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWD 145 (357)
T ss_dssp -----------------------TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred -----------------------CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence 1679999999998 888886 4678999965 3 346666 5688999999
Q ss_pred CCCCc-eEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeee
Q 003308 162 AATLE-IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYA 240 (832)
Q Consensus 162 l~t~~-~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A 240 (832)
+.+.+ .+.++..+..... .++ .-+++.. .+. .++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~-----------~~v----~~~~~~~--------------~~~---------~~~~------ 181 (357)
T 3i2n_A 146 PRQKDDPVANMEPVQGENK-----------RDC----WTVAFGN--------------AYN---------QEER------ 181 (357)
T ss_dssp TTSCSSCSEEECCCTTSCC-----------CCE----EEEEEEC--------------CCC----------CCC------
T ss_pred CCCCCCcceeccccCCCCC-----------Cce----EEEEEEe--------------ccC---------CCCC------
Confidence 99887 5555544321000 000 0111110 000 0000
Q ss_pred cccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccC
Q 003308 241 KESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH 320 (832)
Q Consensus 241 ~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH 320 (832)
.++.+..+|.|++||+.+++++ ....|
T Consensus 182 ----------------------------------------------------~l~~~~~d~~i~i~d~~~~~~~-~~~~~ 208 (357)
T 3i2n_A 182 ----------------------------------------------------VVCAGYDNGDIKLFDLRNMALR-WETNI 208 (357)
T ss_dssp ----------------------------------------------------EEEEEETTSEEEEEETTTTEEE-EEEEC
T ss_pred ----------------------------------------------------EEEEEccCCeEEEEECccCcee-eecCC
Confidence 1234456789999999998874 44678
Q ss_pred CCCeEEEEEcC---CCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCC-EEE
Q 003308 321 KSPISALCFDP---SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIM 396 (832)
Q Consensus 321 ~~pIs~LaFSP---dG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~-~LA 396 (832)
..+|.+++|+| +|.+|++++.||+ |++||+.++..- .......+ .++ ...|.+++|+||++ +|+
T Consensus 209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~---------~~~~~~~~-~~~-~~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 209 KNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMRTQHPT---------KGFASVSE-KAH-KSTVWQVRHLPQNRELFL 276 (357)
T ss_dssp SSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEEEEETT---------TEEEEEEE-ECC-SSCEEEEEEETTEEEEEE
T ss_pred CCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCcCCCcc---------cceeeecc-CCC-cCCEEEEEECCCCCcEEE
Confidence 89999999999 9999999999997 899999765110 00111122 243 34699999999999 899
Q ss_pred EEeCCCcEEEEecCCCCCc
Q 003308 397 ISSSRGTSHLFAINPLGGS 415 (832)
Q Consensus 397 sgS~DgTVhIwdl~~~g~~ 415 (832)
+++.||+|+|||+......
T Consensus 277 ~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 277 TAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EEETTSEEEEEEEECCSCC
T ss_pred EEeCCCcEEEeecCCCccc
Confidence 9999999999999875443
No 94
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.3e-17 Score=177.82 Aligned_cols=213 Identities=13% Similarity=0.193 Sum_probs=151.8
Q ss_pred CeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCCCCCE
Q 003308 39 NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTV 118 (832)
Q Consensus 39 ~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~t 118 (832)
....++..|.++|.++++.|+. .+||.++. +++
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~--------------~~l~~~~~---------------------------------dg~ 34 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYG--------------KRLATCSS---------------------------------DKT 34 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSS--------------SEEEEEET---------------------------------TSC
T ss_pred CccEEecCCcccEEEEEEcCCC--------------CEEEEEEC---------------------------------CCc
Confidence 3456778899999999998743 35665542 167
Q ss_pred EEEEECC--CCcEEEEEe-CCCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCc--eEEEEecCCCccCCCCCCCCCc
Q 003308 119 VHFYSLR--SQSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGI 188 (832)
Q Consensus 119 VrlWDL~--Tg~~V~tL~-f~s~V~sV~~S----~r~LAV-a~~~~I~vwDl~t~~--~~~tl~t~~~~~~~p~~~~~~~ 188 (832)
|+|||+. +++.++.+. +...|.+|+|+ +++|++ +.++.|++||+.+++ .+..+..+..
T Consensus 35 i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~------------ 102 (379)
T 3jrp_A 35 IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA------------ 102 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS------------
T ss_pred EEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc------------
Confidence 9999998 667777776 46799999996 567776 567899999999886 4444433311
Q ss_pred ccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCcccccccccccc
Q 003308 189 GYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 268 (832)
Q Consensus 189 ~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~ 268 (832)
++ ..+++..+. .+.
T Consensus 103 ---~v----~~~~~~~~~-------------------------~~~---------------------------------- 116 (379)
T 3jrp_A 103 ---SV----NSVQWAPHE-------------------------YGP---------------------------------- 116 (379)
T ss_dssp ---CE----EEEEECCGG-------------------------GCS----------------------------------
T ss_pred ---ce----EEEEeCCCC-------------------------CCC----------------------------------
Confidence 01 112332100 000
Q ss_pred ccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCC--cEEEEeccCCCCeEEEEEcC-------------CC
Q 003308 269 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFRAHKSPISALCFDP-------------SG 333 (832)
Q Consensus 269 ~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~--~~l~~~~aH~~pIs~LaFSP-------------dG 333 (832)
.++.+..+|.|+|||+.+. .....+.+|..+|.+++|+| ++
T Consensus 117 ------------------------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3jrp_A 117 ------------------------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172 (379)
T ss_dssp ------------------------EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTT
T ss_pred ------------------------EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence 1233456889999999887 34556779999999999999 79
Q ss_pred CEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccC---CCEEEEEeCCCcEEEEecC
Q 003308 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD---SNWIMISSSRGTSHLFAIN 410 (832)
Q Consensus 334 ~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpD---g~~LAsgS~DgTVhIwdl~ 410 (832)
.+|++++.||+ |+|||+..+. .....+..+ .++. ..|.+++|+|| +++|++++.||+|+||++.
T Consensus 173 ~~l~~~~~dg~-i~i~d~~~~~----------~~~~~~~~~-~~h~-~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 173 RKFVTGGADNL-VKIWKYNSDA----------QTYVLESTL-EGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp CEEEEEETTSC-EEEEEEETTT----------TEEEEEEEE-CCCS-SCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred CEEEEEeCCCe-EEEEEecCCC----------cceeeEEEE-eccc-CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 99999999998 8999997651 011233344 3443 46999999999 9999999999999999998
Q ss_pred CCC
Q 003308 411 PLG 413 (832)
Q Consensus 411 ~~g 413 (832)
...
T Consensus 240 ~~~ 242 (379)
T 3jrp_A 240 NEQ 242 (379)
T ss_dssp STT
T ss_pred CCC
Confidence 753
No 95
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.80 E-value=2.4e-17 Score=171.81 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=81.1
Q ss_pred cccCCCCeEEEEECCCCcEEEEec-------------cCCCCeEEEEEcCC---CCEEEEEEcCCCEEEEEeCCCCCCCC
Q 003308 295 PDADNVGMVIVRDIVSKNVIAQFR-------------AHKSPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGT 358 (832)
Q Consensus 295 ~s~~~~G~V~IwDl~s~~~l~~~~-------------aH~~pIs~LaFSPd---G~lLATaS~dGt~I~Iwdi~t~~~~~ 358 (832)
+++..+|.|+|||+.+++.+..+. .|...|.+++|+|+ +.+|++++.+|. +.+|+...+
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~~---- 202 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKDG---- 202 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTTS----
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCCC----
Confidence 345678999999999877554443 68889999999997 999999999986 666666543
Q ss_pred CCccCCCCceeEEEEEeccCccccEEEEEEccCC----CEEEEEeCCCcEEEEecCCCCC
Q 003308 359 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS----NWIMISSSRGTSHLFAINPLGG 414 (832)
Q Consensus 359 ~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg----~~LAsgS~DgTVhIwdl~~~g~ 414 (832)
....+..+ .++ ...|.+++|+|++ ++|++++.||+|+|||+.....
T Consensus 203 --------~~~~~~~~-~~h-~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 203 --------KLHVAAKL-PGH-KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp --------CEEEEEEC-CCC-CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred --------ceeeeeec-CCC-CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence 12234444 344 3469999999998 8999999999999999986543
No 96
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.79 E-value=1.8e-18 Score=192.81 Aligned_cols=242 Identities=12% Similarity=0.113 Sum_probs=151.3
Q ss_pred CcEEEEEe-cCCeEEEEeccCCCeeEEe--eecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCC
Q 003308 18 RRVLLLGY-RSGFQVWDVEEADNVHDLV--SRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (832)
Q Consensus 18 ~~vLl~Gy-~~G~qVWdv~~~~~~~ell--S~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg 94 (832)
..+|+.|. ++.++|||++.. +...++ ..|.++|.+++|.|.. ..+|+.++.
T Consensus 132 ~~~lasGs~dg~i~lWd~~~~-~~~~~~~~~gH~~~V~~l~f~p~~-------------~~~l~s~s~------------ 185 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGIK-DKPTFIKGIGAGGSITGLKFNPLN-------------TNQFYASSM------------ 185 (435)
T ss_dssp TTCEEEEETTSCEEEECSSCC-SCCEEECCCSSSCCCCEEEECSSC-------------TTEEEEECS------------
T ss_pred CCEEEEEeCCCEEEEEECCCC-CceeEEEccCCCCCEEEEEEeCCC-------------CCEEEEEeC------------
Confidence 34566655 555999999864 333333 3689999999998731 013443331
Q ss_pred cccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC---CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceE
Q 003308 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE 168 (832)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f---~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~ 168 (832)
+++|+|||++++.+...... ...+.+++++ +++|++ +.++.|++||+.+ +++
T Consensus 186 ---------------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~ 243 (435)
T 4e54_B 186 ---------------------EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KEL 243 (435)
T ss_dssp ---------------------SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBC
T ss_pred ---------------------CCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-cee
Confidence 27899999987765433333 3357788886 467777 4678999999864 333
Q ss_pred EEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccccee
Q 003308 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (832)
Q Consensus 169 ~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~la 248 (832)
.++..|.. ++ .-|+|.. .+.
T Consensus 244 ~~~~~h~~---------------~v----~~v~~~p---------------------------~~~-------------- 263 (435)
T 4e54_B 244 WNLRMHKK---------------KV----THVALNP---------------------------CCD-------------- 263 (435)
T ss_dssp CCSBCCSS---------------CE----EEEEECT---------------------------TCS--------------
T ss_pred EEEecccc---------------eE----EeeeecC---------------------------CCc--------------
Confidence 33333311 11 1122221 000
Q ss_pred ceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEE---eccCCCCeE
Q 003308 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQ---FRAHKSPIS 325 (832)
Q Consensus 249 sGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~---~~aH~~pIs 325 (832)
..++++..||.|+|||+.+.+.... ..+|..+|.
T Consensus 264 -------------------------------------------~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 300 (435)
T 4e54_B 264 -------------------------------------------WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN 300 (435)
T ss_dssp -------------------------------------------SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEE
T ss_pred -------------------------------------------eEEEEecCcceeeEEecccccccceEEEeeecccccc
Confidence 0123445788999999988654433 358999999
Q ss_pred EEEEcCCCCEEEEEEcCCCEEEEEeCCCCCC--------CC-----C----------------Ccc--------CCCCc-
Q 003308 326 ALCFDPSGILLVTASVQGHNINIFKIIPGIL--------GT-----S----------------SAC--------DAGTS- 367 (832)
Q Consensus 326 ~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~--------~~-----~----------------s~~--------~~~~~- 367 (832)
+|+|+|||++|||++.||+ |+|||+.++.. .. . +.. +....
T Consensus 301 ~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 301 AACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT 379 (435)
T ss_dssp ECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred ceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence 9999999999999999998 89999876411 00 0 000 00001
Q ss_pred --------eeEEEEEeccCccccEEEE-EEccCCCEEEEEeCCCcEEEEecCCCC
Q 003308 368 --------YVHLYRLQRGLTNAVIQDI-SFSDDSNWIMISSSRGTSHLFAINPLG 413 (832)
Q Consensus 368 --------~~~l~~l~rG~t~a~I~~I-aFSpDg~~LAsgS~DgTVhIwdl~~~g 413 (832)
...+..+..++. ..|.++ +|||||++||+|+ |++|+||++++++
T Consensus 380 i~iwd~~~g~~~~~l~~~~~-~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 380 IDVFDGNSGKMMCQLYDPES-SGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp EEEECSSSCCEEEEECCSSC-CCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEEEECCCCcEEEEEeCCCC-CcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 122233333332 346666 6999999999876 8899999998753
No 97
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.79 E-value=1.6e-16 Score=172.11 Aligned_cols=232 Identities=13% Similarity=0.133 Sum_probs=164.3
Q ss_pred cEEEEEe-cCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCccc
Q 003308 19 RVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (832)
Q Consensus 19 ~vLl~Gy-~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~ 97 (832)
.+++.+. ++.+++||+.. +.+...+..+ ..+.++++.|+. ..|+++...
T Consensus 3 ~l~vs~~~d~~v~v~d~~~-~~~~~~~~~~-~~~~~~~~s~dg--------------~~l~~~~~~-------------- 52 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS-NKVTATIPVG-SNPMGAVISPDG--------------TKVYVANAH-------------- 52 (391)
T ss_dssp EEEEEETTTTEEEEEETTT-TEEEEEEECS-SSEEEEEECTTS--------------SEEEEEEGG--------------
T ss_pred EEEEEcCCCCEEEEEECCC-CeEEEEeecC-CCcceEEECCCC--------------CEEEEECCC--------------
Confidence 4566665 45599999986 5555555544 458888888743 134334321
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEe--CCEEEEEECCCCceEEEEec
Q 003308 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ--AAQVHCFDAATLEIEYAILT 173 (832)
Q Consensus 98 ~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~r~LAVa~--~~~I~vwDl~t~~~~~tl~t 173 (832)
+++|++||+.++++++.+.....|.+++++ ++.|+++. ++.|++||+.+++.+..+..
T Consensus 53 ------------------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~ 114 (391)
T 1l0q_A 53 ------------------SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT 114 (391)
T ss_dssp ------------------GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ------------------CCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence 178999999999999999998899999997 46665543 58999999999988777654
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeee
Q 003308 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (832)
Q Consensus 174 ~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~ 253 (832)
+.. + ..+++.. +|..+
T Consensus 115 ~~~---------------~-----~~~~~s~---------------------------dg~~l----------------- 130 (391)
T 1l0q_A 115 GKS---------------P-----LGLALSP---------------------------DGKKL----------------- 130 (391)
T ss_dssp SSS---------------E-----EEEEECT---------------------------TSSEE-----------------
T ss_pred CCC---------------c-----ceEEECC---------------------------CCCEE-----------------
Confidence 311 1 1123321 11110
Q ss_pred ccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC
Q 003308 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (832)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG 333 (832)
++.+..++.|++||+.+++++..+..|. .+.+++|+|+|
T Consensus 131 ----------------------------------------~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg 169 (391)
T 1l0q_A 131 ----------------------------------------YVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDG 169 (391)
T ss_dssp ----------------------------------------EEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTS
T ss_pred ----------------------------------------EEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCC
Confidence 0123456799999999999999988775 56999999999
Q ss_pred CEE-EEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEe---CCCcEEEEec
Q 003308 334 ILL-VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS---SRGTSHLFAI 409 (832)
Q Consensus 334 ~lL-ATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS---~DgTVhIwdl 409 (832)
++| ++++.+|+ |++||+.++ ..+..+.. ...+.+++|+||+++|++++ .+++|++||+
T Consensus 170 ~~l~~~~~~~~~-v~~~d~~~~--------------~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 170 TKVYVANFDSMS-ISVIDTVTN--------------SVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp SEEEEEETTTTE-EEEEETTTT--------------EEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred CEEEEEeCCCCE-EEEEECCCC--------------eEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 988 56666766 999999876 33334432 23589999999999999988 6899999999
Q ss_pred CCCCCceeeccC
Q 003308 410 NPLGGSVNFQPT 421 (832)
Q Consensus 410 ~~~g~~~~~~~H 421 (832)
........+..|
T Consensus 232 ~~~~~~~~~~~~ 243 (391)
T 1l0q_A 232 GTNKITARIPVG 243 (391)
T ss_dssp TTTEEEEEEECC
T ss_pred CCCeEEEEEecC
Confidence 876544455444
No 98
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.79 E-value=2.3e-17 Score=176.05 Aligned_cols=230 Identities=14% Similarity=0.154 Sum_probs=157.8
Q ss_pred EEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCCCCCEEEE
Q 003308 42 DLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHF 121 (832)
Q Consensus 42 ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrl 121 (832)
+++..|.++|.++++.|+. .+|++++. +++|++
T Consensus 2 ~~~~~~~~~i~~~~~s~~~--------------~~l~~~~~---------------------------------d~~v~i 34 (372)
T 1k8k_C 2 AYHSFLVEPISCHAWNKDR--------------TQIAICPN---------------------------------NHEVHI 34 (372)
T ss_dssp CEEESCSSCCCEEEECTTS--------------SEEEEECS---------------------------------SSEEEE
T ss_pred ceecccCCCeEEEEECCCC--------------CEEEEEeC---------------------------------CCEEEE
Confidence 4566689999999998743 24554432 178999
Q ss_pred EECCCCc--EEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccceeee
Q 003308 122 YSLRSQS--YVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAV 195 (832)
Q Consensus 122 WDL~Tg~--~V~tL~-f~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Al 195 (832)
||+.+++ ++.++. +...|.+++|+ +++|++ +.++.|++||+.+++....+...... .++
T Consensus 35 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------~~v-- 99 (372)
T 1k8k_C 35 YEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN-------------RAA-- 99 (372)
T ss_dssp EEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS-------------SCE--
T ss_pred EeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCC-------------Cce--
Confidence 9999998 888886 47799999997 567776 56789999999888755444321100 001
Q ss_pred ccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCCCcC
Q 003308 196 GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQN 275 (832)
Q Consensus 196 g~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~ 275 (832)
..++|.. ++.
T Consensus 100 --~~~~~~~---------------------------~~~----------------------------------------- 109 (372)
T 1k8k_C 100 --RCVRWAP---------------------------NEK----------------------------------------- 109 (372)
T ss_dssp --EEEEECT---------------------------TSS-----------------------------------------
T ss_pred --eEEEECC---------------------------CCC-----------------------------------------
Confidence 1122321 011
Q ss_pred ccccccCCCCCCCcccccccccCCCCeEEEEECCCCc---EEEEe-ccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeC
Q 003308 276 SLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN---VIAQF-RAHKSPISALCFDPSGILLVTASVQGHNINIFKI 351 (832)
Q Consensus 276 si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~---~l~~~-~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi 351 (832)
.++.+..+|.|+|||+..++ ....+ .+|..+|.+++|+|+|.+|++++.||. |++||+
T Consensus 110 -----------------~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~ 171 (372)
T 1k8k_C 110 -----------------KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK-CRIFSA 171 (372)
T ss_dssp -----------------EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEEC
T ss_pred -----------------EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCC-EEEEEc
Confidence 12233467889999998876 23344 689999999999999999999999998 899997
Q ss_pred CCCCCCCCC-c---cCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCC
Q 003308 352 IPGILGTSS-A---CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (832)
Q Consensus 352 ~t~~~~~~s-~---~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~~ 423 (832)
......... . .........+..+. ++ ...|.+++|+||+++|++++.|++|+|||+........+..|..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 245 (372)
T 1k8k_C 172 YIKEVEERPAPTPWGSKMPFGELMFESS-SS-CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 245 (372)
T ss_dssp CCTTTSCCCCCBTTBSCCCTTCEEEECC-CC-SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred ccccccccccccccccccchhhheEecC-CC-CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC
Confidence 532100000 0 00000123444443 33 34699999999999999999999999999998777777777743
No 99
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.79 E-value=5e-18 Score=184.88 Aligned_cols=118 Identities=13% Similarity=0.144 Sum_probs=85.5
Q ss_pred ccccCCCCe-EEEEECCCCcEEEEec-c-CCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCc-cC-----C
Q 003308 294 FPDADNVGM-VIVRDIVSKNVIAQFR-A-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA-CD-----A 364 (832)
Q Consensus 294 ~~s~~~~G~-V~IwDl~s~~~l~~~~-a-H~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~-~~-----~ 364 (832)
++++..||+ |+|||+.+++++.+|+ + |..+|.+|+|+|||++||+++.||+ |+|||+.......... .+ .
T Consensus 210 l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 210 VATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp EEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCCCSEETTTTEECCC
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCcccccccceeeccc
Confidence 455678898 9999999999999998 5 9999999999999999999999987 9999997652110000 00 0
Q ss_pred CCc--eeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 003308 365 GTS--YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (832)
Q Consensus 365 ~~~--~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g 413 (832)
... ....+.+..+. ......++|++|+++|++++.||++++|++...+
T Consensus 289 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVDK-HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCSSCSEEEECCCCT-TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cccccceeEEEeccCC-CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 000 00112222211 1124669999999999999999999999997643
No 100
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.79 E-value=1.5e-17 Score=197.65 Aligned_cols=219 Identities=11% Similarity=0.195 Sum_probs=169.0
Q ss_pred eeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCCCCCEE
Q 003308 40 VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVV 119 (832)
Q Consensus 40 ~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tV 119 (832)
....+..|.+.|+++++.|+. ++||+++. +++|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~--------------~~la~~~~---------------------------------~g~v 37 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTE--------------PWVLTTLY---------------------------------SGRV 37 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSS--------------SEEEEEET---------------------------------TSEE
T ss_pred cceeeecCCCceEEEEECCCC--------------CEEEEEeC---------------------------------CCEE
Confidence 456777899999999998853 46766553 1789
Q ss_pred EEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccceeee
Q 003308 120 HFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAV 195 (832)
Q Consensus 120 rlWDL~Tg~~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Al 195 (832)
+|||+.+++.+.++.. ..+|.+++|+ +++||+ +.++.|++||+.+++.+.++..|... +
T Consensus 38 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~---------------v-- 100 (814)
T 3mkq_A 38 EIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY---------------I-- 100 (814)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC---------------E--
T ss_pred EEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC---------------E--
Confidence 9999999999999984 6799999997 466776 56789999999999998888766321 1
Q ss_pred ccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCCCcC
Q 003308 196 GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQN 275 (832)
Q Consensus 196 g~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~ 275 (832)
+.++++. ++..
T Consensus 101 --~~~~~s~---------------------------~~~~---------------------------------------- 111 (814)
T 3mkq_A 101 --RSIAVHP---------------------------TKPY---------------------------------------- 111 (814)
T ss_dssp --EEEEECS---------------------------SSSE----------------------------------------
T ss_pred --EEEEEeC---------------------------CCCE----------------------------------------
Confidence 1233331 1111
Q ss_pred ccccccCCCCCCCcccccccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcC-CCCEEEEEEcCCCEEEEEeCCC
Q 003308 276 SLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIP 353 (832)
Q Consensus 276 si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~-~~l~~~~aH~~pIs~LaFSP-dG~lLATaS~dGt~I~Iwdi~t 353 (832)
++++..+|.|+|||+.++ .....+.+|..+|.+++|+| +|.+|++++.||+ |++||+..
T Consensus 112 ------------------l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-v~vwd~~~ 172 (814)
T 3mkq_A 112 ------------------VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWSLGQ 172 (814)
T ss_dssp ------------------EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEETTC
T ss_pred ------------------EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe-EEEEECCC
Confidence 123456789999999987 77888999999999999999 8999999999997 89999976
Q ss_pred CCCCCCCccCCCCceeEEEEEeccCccccEEEEEEcc--CCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCc
Q 003308 354 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 425 (832)
Q Consensus 354 ~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSp--Dg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~~~~ 425 (832)
+ .....+..+ ....|.+++|+| |+++|++++.||+|++||+........+.+|...+
T Consensus 173 ~--------------~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v 231 (814)
T 3mkq_A 173 S--------------TPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231 (814)
T ss_dssp S--------------SCSEEEECC-CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred C--------------cceeEEecC-CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence 5 122233322 224589999999 99999999999999999998876667777776543
No 101
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.78 E-value=2.6e-17 Score=183.38 Aligned_cols=242 Identities=12% Similarity=0.128 Sum_probs=160.8
Q ss_pred CcEEEEEecCC-eEEEEeccC---------CCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCcc
Q 003308 18 RRVLLLGYRSG-FQVWDVEEA---------DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSC 87 (832)
Q Consensus 18 ~~vLl~Gy~~G-~qVWdv~~~---------~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g 87 (832)
+.+|+.|..+| ++|||+... ......+..|.+.|.++.+.|... .+|+.++.
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-------------~~l~s~~~----- 202 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN-------------GYLLSASD----- 202 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST-------------TEEEEECT-----
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC-------------CeEEEEeC-----
Confidence 45677766554 999999862 233445556888888888876421 14443332
Q ss_pred CccccCCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcE-------EEEE-eCCCCEEEEEEcC---CEEEE-EeCC
Q 003308 88 GTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSY-------VHML-KFRSPIYSVRCSS---RVVAI-CQAA 155 (832)
Q Consensus 88 ~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~-------V~tL-~f~s~V~sV~~S~---r~LAV-a~~~ 155 (832)
+++|++||+.++.. ...+ .+...|.+|+|++ .++++ +.++
T Consensus 203 ----------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg 254 (430)
T 2xyi_A 203 ----------------------------DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 254 (430)
T ss_dssp ----------------------------TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred ----------------------------CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC
Confidence 26799999988422 2334 3467899999964 57766 5688
Q ss_pred EEEEEECCCC---ceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCC
Q 003308 156 QVHCFDAATL---EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN 232 (832)
Q Consensus 156 ~I~vwDl~t~---~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~ 232 (832)
.|++||+++. +.+..+..|.. ++ +-|++.. +
T Consensus 255 ~i~i~d~~~~~~~~~~~~~~~~~~---------------~v----~~i~~~p---------------------------~ 288 (430)
T 2xyi_A 255 KLMIWDTRNNNTSKPSHTVDAHTA---------------EV----NCLSFNP---------------------------Y 288 (430)
T ss_dssp EEEEEETTCSCSSSCSEEEECCSS---------------CE----EEEEECS---------------------------S
T ss_pred eEEEEECCCCCCCcceeEeecCCC---------------Ce----EEEEeCC---------------------------C
Confidence 9999999986 34444443311 00 1223321 0
Q ss_pred CcceeeeecccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCC-C
Q 003308 233 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-K 311 (832)
Q Consensus 233 g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s-~ 311 (832)
+.. .++++..+|.|+|||+.+ +
T Consensus 289 ~~~---------------------------------------------------------~l~tg~~dg~v~vwd~~~~~ 311 (430)
T 2xyi_A 289 SEF---------------------------------------------------------ILATGSADKTVALWDLRNLK 311 (430)
T ss_dssp CTT---------------------------------------------------------EEEEEETTSEEEEEETTCTT
T ss_pred CCC---------------------------------------------------------EEEEEeCCCeEEEEeCCCCC
Confidence 000 123455789999999998 6
Q ss_pred cEEEEeccCCCCeEEEEEcCCCC-EEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEcc
Q 003308 312 NVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 390 (832)
Q Consensus 312 ~~l~~~~aH~~pIs~LaFSPdG~-lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSp 390 (832)
.++..+..|..+|.+|+|+|+|. +||+++.||+ |+|||+..............+....++.+ .++. ..|.+++|+|
T Consensus 312 ~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~-~~v~~~~~~p 388 (430)
T 2xyi_A 312 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHT-AKISDFSWNP 388 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCCCCHHHHHHCCTTEEEEC-CCCS-SCEEEEEECS
T ss_pred CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccccCccccccCCcceEEEc-CCCC-CCceEEEECC
Confidence 78899999999999999999995 7999999998 89999976310000000000001233333 4543 4599999999
Q ss_pred CCC-EEEEEeCCCcEEEEecCC
Q 003308 391 DSN-WIMISSSRGTSHLFAINP 411 (832)
Q Consensus 391 Dg~-~LAsgS~DgTVhIwdl~~ 411 (832)
+++ +|++++.||+|+||++..
T Consensus 389 ~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 389 NEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCEEEEEECCCCEEEeEccc
Confidence 999 899999999999999964
No 102
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.78 E-value=2.3e-17 Score=180.85 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=84.6
Q ss_pred CeEEEEECCCCcEEE--EeccCCCCeEEEEEcCCCCEEEEEEcCCC---EEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003308 301 GMVIVRDIVSKNVIA--QFRAHKSPISALCFDPSGILLVTASVQGH---NINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (832)
Q Consensus 301 G~V~IwDl~s~~~l~--~~~aH~~pIs~LaFSPdG~lLATaS~dGt---~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~ 375 (832)
+.+++|+..+++.+. .+..|...|.+++|+|||++|++++.|+. .+++|++.... ........+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~----------~~~~~~~~~~ 266 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN----------TSVLRSKQVT 266 (365)
T ss_dssp SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE----------EEEEEEEEEE
T ss_pred eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce----------ecceeeeeec
Confidence 356777777776554 34578899999999999999999998874 47889886640 0112223332
Q ss_pred ccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee-ccCCCCcc
Q 003308 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDANFT 426 (832)
Q Consensus 376 rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~-~~H~~~~~ 426 (832)
++. ..|.+++|||||++||+|+.|++|+|||+.++.....+ ++|...+.
T Consensus 267 -~~~-~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~ 316 (365)
T 4h5i_A 267 -NRF-KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAIT 316 (365)
T ss_dssp -SSC-SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEE
T ss_pred -CCC-CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEE
Confidence 332 35999999999999999999999999999987666665 68865443
No 103
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.78 E-value=3.6e-16 Score=164.69 Aligned_cols=215 Identities=11% Similarity=0.135 Sum_probs=153.2
Q ss_pred eeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCCCCCEE
Q 003308 40 VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVV 119 (832)
Q Consensus 40 ~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tV 119 (832)
++..|..|.++|.++++.|+. ..+||.++. +++|
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~-------------~~~l~S~s~---------------------------------D~~i 63 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQF-------------PDMILSASR---------------------------------DKTI 63 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTC-------------TTEEEEEET---------------------------------TSCE
T ss_pred EEEEECCccCCEEEEEEeCCC-------------CCEEEEEcC---------------------------------CCeE
Confidence 344567899999999998741 124554432 2789
Q ss_pred EEEECCCCc-----EEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCccc
Q 003308 120 HFYSLRSQS-----YVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (832)
Q Consensus 120 rlWDL~Tg~-----~V~tL~f-~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~ 190 (832)
+|||+.+++ ++++++. ...|.+++|+ +++|++ +.++.|++|+............+..
T Consensus 64 ~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~-------------- 129 (340)
T 4aow_A 64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK-------------- 129 (340)
T ss_dssp EEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--------------
T ss_pred EEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCC--------------
Confidence 999997654 4566664 6799999997 466666 6788999999998876655543311
Q ss_pred ceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCcccccccccccccc
Q 003308 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (832)
Q Consensus 191 ~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~ 270 (832)
.. ..+++.. .+
T Consensus 130 -~~----~~~~~~~---------------------------~~------------------------------------- 140 (340)
T 4aow_A 130 -DV----LSVAFSS---------------------------DN------------------------------------- 140 (340)
T ss_dssp -CE----EEEEECT---------------------------TS-------------------------------------
T ss_pred -ce----eEEEEee---------------------------cC-------------------------------------
Confidence 00 0011110 00
Q ss_pred CCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcE-EEEeccCCCCeEEEEEcCCC--CEEEEEEcCCCEEE
Q 003308 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV-IAQFRAHKSPISALCFDPSG--ILLVTASVQGHNIN 347 (832)
Q Consensus 271 p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~-l~~~~aH~~pIs~LaFSPdG--~lLATaS~dGt~I~ 347 (832)
..++++..+|.+++||+..... ...+.+|...|.+++|++++ .++++++.|++ |+
T Consensus 141 ---------------------~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~ 198 (340)
T 4aow_A 141 ---------------------RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VK 198 (340)
T ss_dssp ---------------------SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC-EE
T ss_pred ---------------------ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE-EE
Confidence 0123445688999999987654 44556899999999999875 57899999988 89
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003308 348 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (832)
Q Consensus 348 Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H 421 (832)
+||+.++ ..+..+ .++. ..|.+|+|+||+++||+++.||+|+|||+........+..|
T Consensus 199 i~d~~~~--------------~~~~~~-~~h~-~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 256 (340)
T 4aow_A 199 VWNLANC--------------KLKTNH-IGHT-GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256 (340)
T ss_dssp EEETTTT--------------EEEEEE-CCCS-SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS
T ss_pred EEECCCC--------------ceeeEe-cCCC-CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC
Confidence 9999876 444444 4544 46999999999999999999999999999887655555544
No 104
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.77 E-value=8.8e-17 Score=178.09 Aligned_cols=229 Identities=16% Similarity=0.243 Sum_probs=155.2
Q ss_pred CCEEEEEECCCCcEEEEEeC---CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcc
Q 003308 116 PTVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 189 (832)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~f---~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~ 189 (832)
+++|+|||+.+|++++.+.+ ...|.+|+|+ +++||+ +.+++|+|||+.++++++++..|...
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~------------ 191 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------ 191 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc------------
Confidence 48999999999999999876 3479999997 478877 56889999999999999998877431
Q ss_pred cceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccc
Q 003308 190 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (832)
Q Consensus 190 ~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~ 269 (832)
...++..++.|+.++... .+..+-.........-+ .++... + .....
T Consensus 192 v~~~s~~~~~l~sgs~d~---------------------------~i~~~d~~~~~~~~~~~--~~h~~~--~--~~~~~ 238 (420)
T 4gga_A 192 VGSLSWNSYILSSGSRSG---------------------------HIHHHDVRVAEHHVATL--SGHSQE--V--CGLRW 238 (420)
T ss_dssp EEEEEEETTEEEEEETTS---------------------------EEEEEETTSSSCEEEEE--ECCSSC--E--EEEEE
T ss_pred eEEEeeCCCEEEEEeCCC---------------------------ceeEeeecccceeeEEe--cccccc--e--eeeee
Confidence 223555556666553211 11111100000000000 011000 0 00000
Q ss_pred cCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCC-CEEEEE--EcC
Q 003308 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSG-ILLVTA--SVQ 342 (832)
Q Consensus 270 ~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~----~l~~~~aH~~pIs~LaFSPdG-~lLATa--S~d 342 (832)
.+. | ..++++..||.|+|||+.+++ .+..+..|..+|.+++|+|++ .+|+++ +.|
T Consensus 239 -----------~~~----g---~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D 300 (420)
T 4gga_A 239 -----------APD----G---RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300 (420)
T ss_dssp -----------CTT----S---SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred -----------cCC----C---CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence 011 1 134567789999999998764 466778999999999999965 466664 478
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEe--CCCcEEEEecCCCCCceeecc
Q 003308 343 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS--SRGTSHLFAINPLGGSVNFQP 420 (832)
Q Consensus 343 Gt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS--~DgTVhIwdl~~~g~~~~~~~ 420 (832)
|+ |+|||+.++ ..+..+.. ...|.+++|+|+++.+++++ .|++|+|||+.+......+.+
T Consensus 301 ~~-I~iwd~~t~--------------~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g 362 (420)
T 4gga_A 301 RH-IRIWNVCSG--------------ACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 362 (420)
T ss_dssp CE-EEEEETTTT--------------EEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC
T ss_pred CE-EEEEeCCcc--------------ccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC
Confidence 77 999999887 44445532 23589999999999998876 799999999998887888999
Q ss_pred CCCCc
Q 003308 421 TDANF 425 (832)
Q Consensus 421 H~~~~ 425 (832)
|++.+
T Consensus 363 H~~~V 367 (420)
T 4gga_A 363 HTSRV 367 (420)
T ss_dssp CSSCE
T ss_pred CCCCE
Confidence 96544
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.77 E-value=2.9e-17 Score=173.59 Aligned_cols=222 Identities=15% Similarity=0.184 Sum_probs=159.4
Q ss_pred cEEEEEecCCeEEEEe-ccCCCeeEEeee--cCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCc
Q 003308 19 RVLLLGYRSGFQVWDV-EEADNVHDLVSR--YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (832)
Q Consensus 19 ~vLl~Gy~~G~qVWdv-~~~~~~~ellS~--~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~ 95 (832)
.+++.+.++.+++||+ .. +.. ..+.. |.+.|.++++.| . .+|+.++.
T Consensus 71 ~l~~~~~dg~i~~wd~~~~-~~~-~~~~~~~~~~~v~~l~~~~-~--------------~~l~s~~~------------- 120 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGS-PSF-QALTNNEANLGICRICKYG-D--------------DKLIAASW------------- 120 (342)
T ss_dssp EEEEEETTSCEEEECSSSS-SSE-EECBSCCCCSCEEEEEEET-T--------------TEEEEEET-------------
T ss_pred EEEEEcCCCeEEEEEeccC-Cce-EeccccCCCCceEEEEeCC-C--------------CEEEEEcC-------------
Confidence 3555555667999999 75 334 55566 899999999986 2 14544432
Q ss_pred ccccCCCCCCCCCCCCCCCCCCEEEEEECCC---------CcEEEEEeCCCCEEEEEEcCCEEEE-EeCCEEEEEECCC-
Q 003308 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRS---------QSYVHMLKFRSPIYSVRCSSRVVAI-CQAAQVHCFDAAT- 164 (832)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~T---------g~~V~tL~f~s~V~sV~~S~r~LAV-a~~~~I~vwDl~t- 164 (832)
+++|++||+++ ++++.++.+...|.++++++..+++ +.++.|++||+.+
T Consensus 121 --------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~ 180 (342)
T 1yfq_A 121 --------------------DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180 (342)
T ss_dssp --------------------TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCC
T ss_pred --------------------CCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcc
Confidence 27899999998 8888888888999999999766666 5678999999998
Q ss_pred CceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccc
Q 003308 165 LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (832)
Q Consensus 165 ~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ss 244 (832)
++........+. .. ++ +.+++... . +.
T Consensus 181 ~~~~~~~~~~~~------------~~-~i----~~i~~~~~------------~--------------~~---------- 207 (342)
T 1yfq_A 181 EDDNGTIEESGL------------KY-QI----RDVALLPK------------E--------------QE---------- 207 (342)
T ss_dssp TTCCCEEEECSC------------SS-CE----EEEEECSG------------G--------------GC----------
T ss_pred ccccceeeecCC------------CC-ce----eEEEECCC------------C--------------CC----------
Confidence 654222211110 00 00 11222200 0 00
Q ss_pred cceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCC------cEEEEec
Q 003308 245 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK------NVIAQFR 318 (832)
Q Consensus 245 k~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~------~~l~~~~ 318 (832)
.++.+..+|.|+|||+... +.+..|+
T Consensus 208 ------------------------------------------------~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 208 ------------------------------------------------GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp ------------------------------------------------EEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred ------------------------------------------------EEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 1223456789999999887 8888999
Q ss_pred cCCC---------CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEc
Q 003308 319 AHKS---------PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS 389 (832)
Q Consensus 319 aH~~---------pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFS 389 (832)
.|.. +|.+++|+|+|++|++++.||. |+|||+.++ ..+..+ .+++...|.+++
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~--------------~~~~~~-~~~h~~~v~~~~-- 301 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTR--------------KKIKNF-AKFNEDSVVKIA-- 301 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTT--------------EEEEEC-CCCSSSEEEEEE--
T ss_pred cccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCccH--------------hHhhhh-hcccCCCceEec--
Confidence 8866 9999999999999999999998 899999876 455555 344245699999
Q ss_pred cCCCEEEEEeCCCc-EEEEec
Q 003308 390 DDSNWIMISSSRGT-SHLFAI 409 (832)
Q Consensus 390 pDg~~LAsgS~DgT-VhIwdl 409 (832)
||+++||+++.||+ .+.|..
T Consensus 302 ~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 302 CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ECSSEEEEEEECTHHHHCSSS
T ss_pred CCCCeEEEEecCCcccccccc
Confidence 99999999999999 666554
No 106
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.77 E-value=6.8e-16 Score=167.13 Aligned_cols=234 Identities=12% Similarity=0.133 Sum_probs=166.6
Q ss_pred CcEEEEE-ecCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLG-YRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~G-y~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
+.+++.+ .++.+++||+.. ++....+.. .+.|..+++.|+. ..|+++...
T Consensus 44 ~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~-~~~v~~~~~spdg--------------~~l~~~~~~------------- 94 (391)
T 1l0q_A 44 TKVYVANAHSNDVSIIDTAT-NNVIATVPA-GSSPQGVAVSPDG--------------KQVYVTNMA------------- 94 (391)
T ss_dssp SEEEEEEGGGTEEEEEETTT-TEEEEEEEC-SSSEEEEEECTTS--------------SEEEEEETT-------------
T ss_pred CEEEEECCCCCeEEEEECCC-CeEEEEEEC-CCCccceEECCCC--------------CEEEEEECC-------------
Confidence 3455565 567799999976 455555543 3488888888743 245555421
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEE-EE-eCCEEEEEECCCCceEEEEe
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVA-IC-QAAQVHCFDAATLEIEYAIL 172 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~r~LA-Va-~~~~I~vwDl~t~~~~~tl~ 172 (832)
+++|++||+.+++.+..+.....+.+++++ ++.|+ ++ .+++|++||+.+++.+..+.
T Consensus 95 -------------------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 155 (391)
T 1l0q_A 95 -------------------SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS 155 (391)
T ss_dssp -------------------TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred -------------------CCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe
Confidence 168999999999999999998899999997 45554 44 47899999999998877765
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceee
Q 003308 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (832)
Q Consensus 173 t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~ 252 (832)
.+.. + .-+++.. ++..+
T Consensus 156 ~~~~---------------~-----~~~~~~~---------------------------dg~~l---------------- 172 (391)
T 1l0q_A 156 VGRS---------------P-----KGIAVTP---------------------------DGTKV---------------- 172 (391)
T ss_dssp CCSS---------------E-----EEEEECT---------------------------TSSEE----------------
T ss_pred cCCC---------------c-----ceEEECC---------------------------CCCEE----------------
Confidence 4311 1 1123321 11110
Q ss_pred eccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC
Q 003308 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (832)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPd 332 (832)
++....+|.|++||+.+++++..+.. ...+.+++|+|+
T Consensus 173 -----------------------------------------~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~ 210 (391)
T 1l0q_A 173 -----------------------------------------YVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPE 210 (391)
T ss_dssp -----------------------------------------EEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTT
T ss_pred -----------------------------------------EEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCC
Confidence 11224568899999999998887764 457899999999
Q ss_pred CCEEEEEE---cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEE-EEEeCCCcEEEEe
Q 003308 333 GILLVTAS---VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWI-MISSSRGTSHLFA 408 (832)
Q Consensus 333 G~lLATaS---~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~L-AsgS~DgTVhIwd 408 (832)
|++|++++ .++. |++||+.++ ..+..+..+ ..+.+++|+|||++| ++++.|++|+|||
T Consensus 211 g~~l~~~~~~~~~~~-v~~~d~~~~--------------~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 211 GTKAYVTNVDKYFNT-VSMIDTGTN--------------KITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp SSEEEEEEECSSCCE-EEEEETTTT--------------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEecCcCCCc-EEEEECCCC--------------eEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 99999888 5665 999999876 344455432 248899999999988 5668899999999
Q ss_pred cCCCCCceeeccCC
Q 003308 409 INPLGGSVNFQPTD 422 (832)
Q Consensus 409 l~~~g~~~~~~~H~ 422 (832)
+.+......+..|.
T Consensus 273 ~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 273 TATNTITATMAVGK 286 (391)
T ss_dssp TTTTEEEEEEECSS
T ss_pred CCCCcEEEEEECCc
Confidence 98865555666553
No 107
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.5e-17 Score=199.75 Aligned_cols=249 Identities=13% Similarity=0.161 Sum_probs=165.7
Q ss_pred CcEEEEEecCCeEEEEeccC-CCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLGYRSGFQVWDVEEA-DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~-~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
+.+++.+.++.++|||+... ......+..|.++|.++++.|... ..+|+.++.
T Consensus 22 ~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~------------~~~l~s~s~-------------- 75 (753)
T 3jro_A 22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF------------GTILASCSY-------------- 75 (753)
T ss_dssp CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTS------------CSEEEEEET--------------
T ss_pred CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCC------------CCEEEEEeC--------------
Confidence 34455555666999999842 234445567899999999986410 124554442
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCc--EEEEEe-CCCCEEEEEEcC----CEEEE-EeCCEEEEEECCCCce-
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLEI- 167 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~--~V~tL~-f~s~V~sV~~S~----r~LAV-a~~~~I~vwDl~t~~~- 167 (832)
+++|++||+.+++ .+..+. +...|.++++++ +++++ +.++.|++||+.+...
T Consensus 76 -------------------Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~ 136 (753)
T 3jro_A 76 -------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 136 (753)
T ss_dssp -------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred -------------------CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence 2679999999997 555555 467999999974 46666 5788999999998742
Q ss_pred -EEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003308 168 -EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (832)
Q Consensus 168 -~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~ 246 (832)
...+..++. ++ ..+++.... ..+ .+...
T Consensus 137 ~~~~~~~~~~---------------~v----~~l~~~p~~-------------~~~---------~~~~~---------- 165 (753)
T 3jro_A 137 SPIIIDAHAI---------------GV----NSASWAPAT-------------IEE---------DGEHN---------- 165 (753)
T ss_dssp CCEEEECCSS---------------CE----EEEEECCCC----------------------------------------
T ss_pred ceeEeecCCC---------------ce----EEEEecCcc-------------ccc---------ccccc----------
Confidence 333333321 01 123333100 000 00000
Q ss_pred eeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCC----cEEEEeccCCC
Q 003308 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK----NVIAQFRAHKS 322 (832)
Q Consensus 247 lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~----~~l~~~~aH~~ 322 (832)
..++ ...++++..+|.|+|||+.++ .++..+.+|..
T Consensus 166 ---------------------------------~~~d-------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~ 205 (753)
T 3jro_A 166 ---------------------------------GTKE-------SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (753)
T ss_dssp ----------------------------------CGG-------GCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred ---------------------------------cCCC-------CCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC
Confidence 0000 012445677899999999876 67788899999
Q ss_pred CeEEEEEcCC---CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEe
Q 003308 323 PISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 399 (832)
Q Consensus 323 pIs~LaFSPd---G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS 399 (832)
+|.+|+|+|+ |.+|++++.||+ |+|||+..+.... ...+... .+ ....|.+++|+|||++|++++
T Consensus 206 ~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd~~~~~~~~---------~~~~~~~-~~-~~~~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 206 WVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQGPW---------KKTLLKE-EK-FPDVLWRASWSLSGNVLALSG 273 (753)
T ss_dssp CEEEEEECCCCSSSEEEEEEESSSC-EEEEEESSSSSCC---------BCCBSSS-SC-CSSCCCCEEECTTTCCEEEEC
T ss_pred cEEEEEeccCCCCCCEEEEEecCCE-EEEecCCCCCCcc---------eeEEecc-CC-CCCceEEEEEcCCCCEEEEEc
Confidence 9999999999 999999999998 8999998751100 0011111 11 234599999999999999999
Q ss_pred CCCcEEEEecCCCCC
Q 003308 400 SRGTSHLFAINPLGG 414 (832)
Q Consensus 400 ~DgTVhIwdl~~~g~ 414 (832)
.||+|+||++...+.
T Consensus 274 ~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 274 GDNKVTLWKENLEGK 288 (753)
T ss_dssp SSSCEECCBCCSSSC
T ss_pred CCCEEEEEecCCCCC
Confidence 999999999986543
No 108
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.77 E-value=2.4e-16 Score=173.33 Aligned_cols=182 Identities=12% Similarity=0.202 Sum_probs=139.2
Q ss_pred CCCEEEEEECCCCcEEEEEeC--CCCEEEEEEc--CCEEEEE-eCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcc
Q 003308 115 VPTVVHFYSLRSQSYVHMLKF--RSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 189 (832)
Q Consensus 115 ~~~tVrlWDL~Tg~~V~tL~f--~s~V~sV~~S--~r~LAVa-~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~ 189 (832)
.+++|++||+.+++.+..+.. ...|.+|+|+ +++|+++ .++.|++||+.+++.+.++..|..
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------- 177 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA------------- 177 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-------------
T ss_pred CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC-------------
Confidence 358999999999999998886 6789999997 4677774 688999999999998888765521
Q ss_pred cceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccc
Q 003308 190 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (832)
Q Consensus 190 ~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~ 269 (832)
++ ..+++.+ .
T Consensus 178 --~v----~~~~~~~-----------------------------~----------------------------------- 187 (401)
T 4aez_A 178 --RV----GCLSWNR-----------------------------H----------------------------------- 187 (401)
T ss_dssp --CE----EEEEEET-----------------------------T-----------------------------------
T ss_pred --ce----EEEEECC-----------------------------C-----------------------------------
Confidence 01 0111110 0
Q ss_pred cCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEE
Q 003308 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINI 348 (832)
Q Consensus 270 ~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~-s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~I 348 (832)
.++++..+|.|++||+. ....+..+.+|..+|.+++|+|+|.+||+++.||+ |+|
T Consensus 188 -----------------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-v~i 243 (401)
T 4aez_A 188 -----------------------VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV-VQI 243 (401)
T ss_dssp -----------------------EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEE
T ss_pred -----------------------EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe-EEE
Confidence 11234567899999999 57788999999999999999999999999999998 899
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCC-EEEEEe--CCCcEEEEecCCCCCceeec
Q 003308 349 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS--SRGTSHLFAINPLGGSVNFQ 419 (832)
Q Consensus 349 wdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~-~LAsgS--~DgTVhIwdl~~~g~~~~~~ 419 (832)
||+.++ ..+..+. ++ ...|.+++|+|++. ++++++ .|++|++||+........+.
T Consensus 244 wd~~~~--------------~~~~~~~-~~-~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~ 301 (401)
T 4aez_A 244 WDARSS--------------IPKFTKT-NH-NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD 301 (401)
T ss_dssp EETTCS--------------SEEEEEC-CC-SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE
T ss_pred ccCCCC--------------CccEEec-CC-cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence 999875 3444553 33 34599999999775 555554 69999999998765555554
No 109
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.76 E-value=4.1e-16 Score=162.66 Aligned_cols=228 Identities=15% Similarity=0.205 Sum_probs=149.4
Q ss_pred CEEEEEECCCCcEEEEEeC---CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCccc
Q 003308 117 TVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f---~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~ 190 (832)
++|+|||+.++++++++++ ...|.+|+|+ +++||+ +.+++|++||+.++++++++..|... .
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~------------~ 112 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------V 112 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC------------E
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce------------E
Confidence 7899999999999999975 4579999997 467776 57889999999999999999877431 1
Q ss_pred ceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCcccccccccccccc
Q 003308 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (832)
Q Consensus 191 ~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~ 270 (832)
..++..++.|+.++... .+..+.......... ...++.... .+.
T Consensus 113 ~~~~~~~~~l~s~~~~~---------------------------~~~~~~~~~~~~~~~--~~~~~~~~~----~~~--- 156 (318)
T 4ggc_A 113 GSLSWNSYILSSGSRSG---------------------------HIHHHDVRVAEHHVA--TLSGHSQEV----CGL--- 156 (318)
T ss_dssp EEEEEETTEEEEEETTS---------------------------EEEEEETTSSSCEEE--EEECCSSCE----EEE---
T ss_pred EEeecCCCEEEEEecCC---------------------------ceEeeecCCCceeEE--EEcCccCce----EEE---
Confidence 12344445555543210 000000000000000 000110000 000
Q ss_pred CCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCCCEE---EEEEcCC
Q 003308 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILL---VTASVQG 343 (832)
Q Consensus 271 p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~----~l~~~~aH~~pIs~LaFSPdG~lL---ATaS~dG 343 (832)
...+. | ..++++..+|.|+|||+.+++ .+.....|..+|.+++|+|++..+ ++++.++
T Consensus 157 --------~~~~~----~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 221 (318)
T 4ggc_A 157 --------RWAPD----G---RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 221 (318)
T ss_dssp --------EECTT----S---SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred --------EEcCC----C---CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCC
Confidence 00010 1 135567789999999998765 345666888999999999976633 4566677
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEe--CCCcEEEEecCCCCCceeeccC
Q 003308 344 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS--SRGTSHLFAINPLGGSVNFQPT 421 (832)
Q Consensus 344 t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS--~DgTVhIwdl~~~g~~~~~~~H 421 (832)
+ |+|||.... ....... ....|..++|+|+++.+++++ .|++|+|||+.+......+.+|
T Consensus 222 ~-i~lwd~~~~--------------~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH 283 (318)
T 4ggc_A 222 H-IRIWNVCSG--------------ACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 283 (318)
T ss_dssp E-EEEEETTTC--------------CEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred E-EEEEecccc--------------ccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC
Confidence 6 999998775 2222221 223599999999999988766 7999999999988888889999
Q ss_pred CCCc
Q 003308 422 DANF 425 (832)
Q Consensus 422 ~~~~ 425 (832)
.+.+
T Consensus 284 ~~~V 287 (318)
T 4ggc_A 284 TSRV 287 (318)
T ss_dssp SSCE
T ss_pred CCCE
Confidence 6544
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.75 E-value=4.8e-17 Score=179.60 Aligned_cols=258 Identities=12% Similarity=0.075 Sum_probs=135.6
Q ss_pred cEEEEE-ecCCeEEEEeccCCCee-E---EeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccC
Q 003308 19 RVLLLG-YRSGFQVWDVEEADNVH-D---LVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (832)
Q Consensus 19 ~vLl~G-y~~G~qVWdv~~~~~~~-e---llS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~D 93 (832)
.+|+.| .++.++|||+....... . .+..|.+.|..+++.|...... . ....+||-++.
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~-~-----~d~~~las~s~----------- 164 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADN-R-----LAEQVIASVGD----------- 164 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTC-S-----EEEEEEEEEET-----------
T ss_pred CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEcccccccc-C-----CCCCEEEEEEC-----------
Confidence 445544 46679999998732221 1 2357999999999987321100 0 01124554442
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEE-EEeCCCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCceE
Q 003308 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVH-MLKFRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIE 168 (832)
Q Consensus 94 g~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~-tL~f~s~V~sV~~S~---r~LAV-a~~~~I~vwDl~t~~~~ 168 (832)
+++|||||++++.++. .+.+.++|.+|+|++ ++|++ +.+++|++||+.+++..
T Consensus 165 ----------------------D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~ 222 (393)
T 4gq1_A 165 ----------------------DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSA 222 (393)
T ss_dssp ----------------------TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--
T ss_pred ----------------------CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccc
Confidence 3899999998876655 456789999999974 45666 57889999999998876
Q ss_pred EEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccccee
Q 003308 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (832)
Q Consensus 169 ~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~la 248 (832)
..+..++.... ... +.......... . ........+..
T Consensus 223 ~~~~~~~~~~~------------~~~-----~s~~~~~~~~~---------~-------~~~~~~~~v~~---------- 259 (393)
T 4gq1_A 223 EENSQTELVKN------------PWL-----LTLNTLPLVNT---------C-------HSSGIASSLAN---------- 259 (393)
T ss_dssp --------CSC------------CCS-----EEEESGGGC----------------------CCSSSCSE----------
T ss_pred ccccccCCccc------------ceE-----Eecccccceee---------e-------eccccccccee----------
Confidence 65544321100 000 01110000000 0 00000000000
Q ss_pred ceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEE
Q 003308 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALC 328 (832)
Q Consensus 249 sGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~La 328 (832)
+....++ | ..++++..++.|+|||+.+++....+..|...+..+.
T Consensus 260 ----------------------------v~~~~~d----g---~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 260 ----------------------------VRWIGSD----G---SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp ----------------------------EEEETTT----T---CEEEEECTTSEEEEEEC-------------------C
T ss_pred ----------------------------eeeecCC----C---CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence 0000011 1 1245567889999999998887777777776666555
Q ss_pred EcC--------------------CCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEE
Q 003308 329 FDP--------------------SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF 388 (832)
Q Consensus 329 FSP--------------------dG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaF 388 (832)
|.| ++.++++++.||+ |+|||+.++ ..+..+. ++. ..|.+|+|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~-V~lwd~~~~--------------~~~~~~~-~~~-~~V~svaf 367 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL-IQLINTYEK--------------DSNSIPI-QLG-MPIVDFCW 367 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE-EEEEETTCT--------------TCCEEEE-ECS-SCEEEEEE
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCE-EEEEECCCC--------------cEEEEec-CCC-CcEEEEEE
Confidence 544 3446788888987 999999876 1122222 222 35999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCC
Q 003308 389 SDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 389 SpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
||||++||+++.+| +.||.+..
T Consensus 368 spdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 368 HQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp CTTSSEEEEEESSE-EEEEEEGG
T ss_pred cCCCCEEEEEeCCC-eEEEEEeC
Confidence 99999999998766 66666643
No 111
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.75 E-value=1.6e-15 Score=166.41 Aligned_cols=224 Identities=10% Similarity=0.084 Sum_probs=161.8
Q ss_pred CcEEEEEec-CCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLGYR-SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~Gy~-~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
..+++.+.. +.+++||++. +.....+..+...+..+.+.|+. ..++++...
T Consensus 181 ~~~~~s~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~------------- 232 (433)
T 3bws_A 181 NELWVSQMQANAVHVFDLKT-LAYKATVDLTGKWSKILLYDPIR--------------DLVYCSNWI------------- 232 (433)
T ss_dssp TEEEEEEGGGTEEEEEETTT-CCEEEEEECSSSSEEEEEEETTT--------------TEEEEEETT-------------
T ss_pred CEEEEEECCCCEEEEEECCC-ceEEEEEcCCCCCeeEEEEcCCC--------------CEEEEEecC-------------
Confidence 566666654 5699999986 45555666678889999988742 234334321
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEe---------CCEEEEEECCCC
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ---------AAQVHCFDAATL 165 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~r~LAVa~---------~~~I~vwDl~t~ 165 (832)
+++|++||+++++.+..+.....+.+++++ ++.|+++. +++|++||+.++
T Consensus 233 -------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 233 -------------------SEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp -------------------TTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred -------------------CCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 168999999999999998888889999997 45676643 679999999998
Q ss_pred ceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003308 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (832)
Q Consensus 166 ~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk 245 (832)
+.+..+... . .++.+++.. ++..+
T Consensus 294 ~~~~~~~~~-~-------------------~~~~~~~~~---------------------------~g~~l--------- 317 (433)
T 3bws_A 294 KLIDTIGPP-G-------------------NKRHIVSGN---------------------------TENKI--------- 317 (433)
T ss_dssp EEEEEEEEE-E-------------------CEEEEEECS---------------------------STTEE---------
T ss_pred cEEeeccCC-C-------------------CcceEEECC---------------------------CCCEE---------
Confidence 766554211 0 012233331 11110
Q ss_pred ceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeE
Q 003308 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS 325 (832)
Q Consensus 246 ~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs 325 (832)
++++..++.|++||+.+++++..+. |...+.
T Consensus 318 ------------------------------------------------~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~ 348 (433)
T 3bws_A 318 ------------------------------------------------YVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPN 348 (433)
T ss_dssp ------------------------------------------------EEEETTTTEEEEEETTTTEEEEEEE-CSSSEE
T ss_pred ------------------------------------------------EEEecCCCEEEEEECCCCcEEEEec-CCCCCC
Confidence 1123456899999999999888886 667899
Q ss_pred EEEEcCCCCEEEEEEc---------------CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEcc
Q 003308 326 ALCFDPSGILLVTASV---------------QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 390 (832)
Q Consensus 326 ~LaFSPdG~lLATaS~---------------dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSp 390 (832)
+++|+|||++|++++. ||. |++||+.++ ..+..+.. ...+.+++|+|
T Consensus 349 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~~~--------------~~~~~~~~---~~~~~~~~~s~ 410 (433)
T 3bws_A 349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTTTD--------------TVKEFWEA---GNQPTGLDVSP 410 (433)
T ss_dssp EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETTTT--------------EEEEEEEC---SSSEEEEEECT
T ss_pred eEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECCCC--------------cEEEEecC---CCCCceEEEcC
Confidence 9999999999998887 355 899999876 34444432 23589999999
Q ss_pred CCCEEEEEeC-CCcEEEEecCC
Q 003308 391 DSNWIMISSS-RGTSHLFAINP 411 (832)
Q Consensus 391 Dg~~LAsgS~-DgTVhIwdl~~ 411 (832)
||++|++++. |++|+||+++.
T Consensus 411 dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 411 DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCEEEEEETTTTEEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEecC
Confidence 9999998875 99999999864
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.75 E-value=1.1e-16 Score=175.95 Aligned_cols=114 Identities=16% Similarity=0.211 Sum_probs=86.4
Q ss_pred ccccCCCCeEEEEECCC-CcEEE-------EeccCCCCeEEEEEcCCC-CEEEEEEcCCCEEEEEeCCCCCCCCCCccCC
Q 003308 294 FPDADNVGMVIVRDIVS-KNVIA-------QFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDA 364 (832)
Q Consensus 294 ~~s~~~~G~V~IwDl~s-~~~l~-------~~~aH~~pIs~LaFSPdG-~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~ 364 (832)
++++ .+|.|+|||+.+ ++.+. .+.+|...|.+++|+|+| .+||+|+.||+ |+|||+..+....
T Consensus 192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~------ 263 (447)
T 3dw8_B 192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMRASALCD------ 263 (447)
T ss_dssp EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETTTCSSSC------
T ss_pred EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECcCCcccc------
Confidence 4555 699999999994 44554 367999999999999999 99999999998 8999998761100
Q ss_pred CCceeEEEEEeccCcc-----------ccEEEEEEccCCCEEEEEeCCCcEEEEecCC-CCCceeeccC
Q 003308 365 GTSYVHLYRLQRGLTN-----------AVIQDISFSDDSNWIMISSSRGTSHLFAINP-LGGSVNFQPT 421 (832)
Q Consensus 365 ~~~~~~l~~l~rG~t~-----------a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~-~g~~~~~~~H 421 (832)
..+..+ .++.. ..|.+++|+|||++|++++. ++|+|||+.. ......+..|
T Consensus 264 ----~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 264 ----RHSKLF-EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp ----TTCEEE-CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred ----ceeeEe-ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence 001222 22221 26999999999999999999 9999999986 4444566666
No 113
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.3e-16 Score=195.96 Aligned_cols=199 Identities=13% Similarity=0.068 Sum_probs=149.0
Q ss_pred ecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCCCCCEEEEEECC
Q 003308 46 RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLR 125 (832)
Q Consensus 46 ~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~ 125 (832)
.|.+.|.++++.|+. .+||..+. +++|+|||..
T Consensus 15 gh~~~V~~lafspdg--------------~~lAsgs~---------------------------------Dg~I~lw~~~ 47 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQ--------------NLLAIATV---------------------------------TGEVHIYGQQ 47 (902)
T ss_dssp ECSSCEEEEEEETTT--------------TEEEEEET---------------------------------TSEEEEECST
T ss_pred CCCCCcEEEEECCCC--------------CEEEEEeC---------------------------------CCEEEEEeCC
Confidence 578999999999853 25665542 2789999999
Q ss_pred CCcEEEEEeCCCCEEEEEEcC-CEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccceeeeccceEEee
Q 003308 126 SQSYVHMLKFRSPIYSVRCSS-RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYS 203 (832)
Q Consensus 126 Tg~~V~tL~f~s~V~sV~~S~-r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya 203 (832)
+++++..+.+..+|.+|+|++ ++|++ +.+++|++||+.+++++.++. ++. .+ ..+++.
T Consensus 48 ~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~---------------~V----~~v~~s 107 (902)
T 2oaj_A 48 QVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF-VPG---------------KI----TSIDTD 107 (902)
T ss_dssp TCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-CSS---------------CE----EEEECC
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-CCC---------------CE----EEEEEC
Confidence 999888877788999999984 54555 678999999999999887774 211 01 112232
Q ss_pred CCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCCCcCccccccCC
Q 003308 204 GSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPG 283 (832)
Q Consensus 204 ~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~ 283 (832)
. ++..
T Consensus 108 p---------------------------~g~~------------------------------------------------ 112 (902)
T 2oaj_A 108 A---------------------------SLDW------------------------------------------------ 112 (902)
T ss_dssp T---------------------------TCSE------------------------------------------------
T ss_pred C---------------------------CCCE------------------------------------------------
Confidence 1 1111
Q ss_pred CCCCCcccccccccCCCCeEEEEECCCCcEE-----------EEeccCCCCeEEEEEcCC-CCEEEEEEcCCCEEEEEeC
Q 003308 284 GKSNGTVNGHFPDADNVGMVIVRDIVSKNVI-----------AQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKI 351 (832)
Q Consensus 284 ~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l-----------~~~~aH~~pIs~LaFSPd-G~lLATaS~dGt~I~Iwdi 351 (832)
++.+..+|.|+|||+.++++. ..+++|.++|.+|+|+|+ +.+|++|+.||+ | |||+
T Consensus 113 ----------l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~-v-lWd~ 180 (902)
T 2oaj_A 113 ----------MLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT-L-TYSL 180 (902)
T ss_dssp ----------EEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCE-E-EEET
T ss_pred ----------EEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCc-E-EEEC
Confidence 123456789999999988764 234689999999999996 578999999987 8 9999
Q ss_pred CCCCCCCCCccCCCCceeEEEEEeccC-----------------ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 003308 352 IPGILGTSSACDAGTSYVHLYRLQRGL-----------------TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (832)
Q Consensus 352 ~t~~~~~~s~~~~~~~~~~l~~l~rG~-----------------t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g 413 (832)
.++ ..+..+. ++ +...|.+++|+|||++||+++.||+|+|||+.++.
T Consensus 181 ~~~--------------~~~~~~~-~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 181 VEN--------------EIKQSFI-YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp TTT--------------EEEEEEC-CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred CCC--------------ceEEEEe-cccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 876 3333332 21 12359999999999999999999999999998754
No 114
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.74 E-value=4.8e-16 Score=172.72 Aligned_cols=178 Identities=11% Similarity=0.152 Sum_probs=126.5
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccceee
Q 003308 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 194 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~A 194 (832)
++|++||+.+++++.++.. ...|.++.+++++|++ +.+++|++||+.+++++.++..|... +..++
T Consensus 139 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~------------v~~~~ 206 (445)
T 2ovr_B 139 NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTST------------VRCMH 206 (445)
T ss_dssp SCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------EEEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCc------------EEEEE
Confidence 7799999999999999874 6799999999888877 56889999999999988888665321 11111
Q ss_pred eccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCCCc
Q 003308 195 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ 274 (832)
Q Consensus 195 lg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~ 274 (832)
+.+..
T Consensus 207 ~~~~~--------------------------------------------------------------------------- 211 (445)
T 2ovr_B 207 LHEKR--------------------------------------------------------------------------- 211 (445)
T ss_dssp EETTE---------------------------------------------------------------------------
T ss_pred ecCCE---------------------------------------------------------------------------
Confidence 11111
Q ss_pred CccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCC
Q 003308 275 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (832)
Q Consensus 275 ~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~ 354 (832)
++++..+|.|++||+.+++++..+.+|..+|.+++| +|.+|++++.||+ |++||+.++
T Consensus 212 -------------------l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-i~iwd~~~~ 269 (445)
T 2ovr_B 212 -------------------VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM-VKVWDPETE 269 (445)
T ss_dssp -------------------EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC-EEEEEGGGT
T ss_pred -------------------EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE-EEEEECCCC
Confidence 122345677788888777777777777777877777 6777777777776 778877664
Q ss_pred CCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003308 355 ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (832)
Q Consensus 355 ~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H 421 (832)
..+..+. ++. ..|.+++| |+++|++++.||+|+|||+.+......+.+|
T Consensus 270 --------------~~~~~~~-~~~-~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 318 (445)
T 2ovr_B 270 --------------TCLHTLQ-GHT-NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318 (445)
T ss_dssp --------------EEEEEEC-CCS-SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred --------------cEeEEec-CCC-CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC
Confidence 3444442 332 34777777 7777788888888888887766555556555
No 115
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.7e-17 Score=175.10 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=88.9
Q ss_pred ccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEE-
Q 003308 294 FPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL- 371 (832)
Q Consensus 294 ~~s~~~~G~V~IwDl~s~~~l~~~~-aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l- 371 (832)
++++..||.|+|||+.+++++..+. .|..+|.+++|+|||.+||+|+.||+ |+|||+.++ ..+
T Consensus 142 l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~-i~iwd~~~~--------------~~~~ 206 (343)
T 3lrv_A 142 FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLSSP--------------DQAS 206 (343)
T ss_dssp EEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC-EEEEESSCT--------------TSCC
T ss_pred EEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCCC--------------CCCc
Confidence 3456678999999999999877775 45568999999999999999999998 999999876 112
Q ss_pred EEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003308 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (832)
Q Consensus 372 ~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H 421 (832)
..+..++ ...|.+|+|+|||++|++++ |++|+|||+........+..+
T Consensus 207 ~~~~~~h-~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~ 254 (343)
T 3lrv_A 207 SRFPVDE-EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY 254 (343)
T ss_dssp EECCCCT-TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC
T ss_pred cEEeccC-CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc
Confidence 2343223 35699999999999999999 559999999987665555543
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.73 E-value=4.3e-16 Score=164.96 Aligned_cols=260 Identities=11% Similarity=0.079 Sum_probs=157.0
Q ss_pred CeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCCCCCE
Q 003308 39 NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTV 118 (832)
Q Consensus 39 ~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~t 118 (832)
....++..|.+.|.++++.|+.. ...+|+.++. +++
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~-----------~g~~l~~~~~---------------------------------dg~ 65 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTL-----------PGNFLIAGSW---------------------------------AND 65 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTS-----------SSEEEEEEET---------------------------------TSE
T ss_pred ceeEeccCCCCceEEEEEcCCCC-----------CceEEEEECC---------------------------------CCc
Confidence 34556678999999999987410 0124554442 278
Q ss_pred EEEEECCC-CcEE-EEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccce
Q 003308 119 VHFYSLRS-QSYV-HMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (832)
Q Consensus 119 VrlWDL~T-g~~V-~tL~-f~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p 192 (832)
|+|||+.+ ++.+ ..+. +...|.+++|+ +++|++ +.++.|++||+.+++.+... .|.. ....
T Consensus 66 i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~------------~v~~ 132 (368)
T 3mmy_A 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA-QHDA------------PVKT 132 (368)
T ss_dssp EEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSS------------CEEE
T ss_pred EEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec-cccC------------ceEE
Confidence 99999998 6655 5555 47899999997 456666 56889999999999876543 3422 1122
Q ss_pred eee--cc--ceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCcccccccccccc
Q 003308 193 LAV--GP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 268 (832)
Q Consensus 193 ~Al--g~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~ 268 (832)
+++ ++ ++|+.++.. ..+.-|-....+.+.. +. .
T Consensus 133 ~~~~~~~~~~~l~~~~~d---------------------------g~i~vwd~~~~~~~~~-~~--~------------- 169 (368)
T 3mmy_A 133 IHWIKAPNYSCVMTGSWD---------------------------KTLKFWDTRSSNPMMV-LQ--L------------- 169 (368)
T ss_dssp EEEEECSSCEEEEEEETT---------------------------SEEEEECSSCSSCSEE-EE--C-------------
T ss_pred EEEEeCCCCCEEEEccCC---------------------------CcEEEEECCCCcEEEE-Ee--c-------------
Confidence 333 22 344444211 1111111111110000 00 0
Q ss_pred ccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEE-ec-cCCCCeEEEEEcCCCCE----EEEEEcC
Q 003308 269 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQ-FR-AHKSPISALCFDPSGIL----LVTASVQ 342 (832)
Q Consensus 269 ~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~-~~-aH~~pIs~LaFSPdG~l----LATaS~d 342 (832)
+ ......... ...++.+..++.+++||+........ +. .+...+.++++.+++.. |++++.|
T Consensus 170 --~---~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 170 --P---ERCYCADVI-------YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp --S---SCEEEEEEE-------TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred --C---CCceEEEec-------CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 0 000000000 01123345678999999987653322 22 44567778887776665 9999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCcc-----------ccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 343 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN-----------AVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 343 Gt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~-----------a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
|. |+|||+..... ...+..+ +++.. ..|.+++|+||+++||+++.||+|+|||+..
T Consensus 238 g~-i~i~~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 238 GR-VAIHYINPPNP-----------AKDNFTF-KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp SE-EEEEESSCSCH-----------HHHSEEE-ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred Cc-EEEEecCCCCc-----------cccceee-eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 97 89999986510 0111222 12221 1499999999999999999999999999998
Q ss_pred CCCceeeccCCC
Q 003308 412 LGGSVNFQPTDA 423 (832)
Q Consensus 412 ~g~~~~~~~H~~ 423 (832)
......+..|..
T Consensus 305 ~~~~~~~~~~~~ 316 (368)
T 3mmy_A 305 RTKLKTSEQLDQ 316 (368)
T ss_dssp TEEEEECCCCSS
T ss_pred CcEEEEecCCCC
Confidence 766667777744
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.73 E-value=3e-16 Score=174.89 Aligned_cols=103 Identities=15% Similarity=0.281 Sum_probs=84.6
Q ss_pred cccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCC-EEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003308 295 PDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (832)
Q Consensus 295 ~s~~~~G~V~IwDl~s~---~~l~~~~aH~~pIs~LaFSPdG~-lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~ 370 (832)
+++..+|.|+|||+.++ +++..+.+|..+|.+|+|+|+|. +||+++.||+ |+|||++... ..
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~-------------~~ 313 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDLRNLK-------------LK 313 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTT-------------SC
T ss_pred EEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCC-------------CC
Confidence 44567899999999987 67888899999999999999997 7999999997 9999998640 12
Q ss_pred EEEEeccCccccEEEEEEccCCC-EEEEEeCCCcEEEEecCCCC
Q 003308 371 LYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLG 413 (832)
Q Consensus 371 l~~l~rG~t~a~I~~IaFSpDg~-~LAsgS~DgTVhIwdl~~~g 413 (832)
+..+. ++ ...|.+|+|+|+++ +||+++.|++|+|||+...+
T Consensus 314 ~~~~~-~h-~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 314 LHSFE-SH-KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp SEEEE-CC-SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred eEEee-cC-CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 23442 33 34699999999995 69999999999999998754
No 118
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.72 E-value=2e-16 Score=173.47 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=90.9
Q ss_pred ccCCCCeEEEEECCCCcEEEEe--ccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003308 296 DADNVGMVIVRDIVSKNVIAQF--RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (832)
Q Consensus 296 s~~~~G~V~IwDl~s~~~l~~~--~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~ 373 (832)
++..+|.|+|||+.+++++..+ .+|...|.+++|+|+|++|++++.||+ |+|||+.++ ..+..
T Consensus 149 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~--------------~~~~~ 213 (402)
T 2aq5_A 149 SAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR-VRVIEPRKG--------------TVVAE 213 (402)
T ss_dssp EEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSE-EEEEETTTT--------------EEEEE
T ss_pred EEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCc-EEEEeCCCC--------------ceeee
Confidence 4557889999999999999999 899999999999999999999999987 999999876 45556
Q ss_pred EeccCccccEEEEEEccCCCEEEEE---eCCCcEEEEecCCCCC
Q 003308 374 LQRGLTNAVIQDISFSDDSNWIMIS---SSRGTSHLFAINPLGG 414 (832)
Q Consensus 374 l~rG~t~a~I~~IaFSpDg~~LAsg---S~DgTVhIwdl~~~g~ 414 (832)
+..++....+.+++|+||+++|+++ +.|++|+|||+.....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 214 KDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp EECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred eccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence 6456655558999999999999999 7999999999987655
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3e-16 Score=175.38 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=87.7
Q ss_pred CCCCeEEEEECCCCcEEE----EeccCCCCeEEEEEcCC---CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003308 298 DNVGMVIVRDIVSKNVIA----QFRAHKSPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (832)
Q Consensus 298 ~~~G~V~IwDl~s~~~l~----~~~aH~~pIs~LaFSPd---G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~ 370 (832)
..+|.|++||+.+++... .+.+|..+|.+|+|+|+ |++|++++.||+ |+|||+.++ ..
T Consensus 168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~~--------------~~ 232 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQC--------------FI 232 (450)
T ss_dssp ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESCT--------------TC
T ss_pred eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCCC--------------ce
Confidence 457889999998876544 78899999999999999 999999999998 899999875 23
Q ss_pred EEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecc
Q 003308 371 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (832)
Q Consensus 371 l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~ 420 (832)
+..+..++. ..|.+++|+ |+++|++++.|++|+|||+..+.....+..
T Consensus 233 ~~~~~~~h~-~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 233 VDKWLFGHK-HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp EEEECCCCS-SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred eeeeecCCC-CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence 344444554 469999999 999999999999999999988765555544
No 120
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.9e-15 Score=185.58 Aligned_cols=234 Identities=11% Similarity=0.128 Sum_probs=155.1
Q ss_pred CCcEEEEEecC-CeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCc
Q 003308 17 TRRVLLLGYRS-GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (832)
Q Consensus 17 ~~~vLl~Gy~~-G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~ 95 (832)
..++|+.|..+ .++|||... ..... .-.|.++|+.+++.| . .+|+.++.
T Consensus 28 dg~~lAsgs~Dg~I~lw~~~~-~~~~~-~~~~~~~V~~l~fsp-g--------------~~L~S~s~------------- 77 (902)
T 2oaj_A 28 TQNLLAIATVTGEVHIYGQQQ-VEVVI-KLEDRSAIKEMRFVK-G--------------IYLVVINA------------- 77 (902)
T ss_dssp TTTEEEEEETTSEEEEECSTT-CEEEE-ECSSCCCEEEEEEET-T--------------TEEEEEET-------------
T ss_pred CCCEEEEEeCCCEEEEEeCCC-cEEEE-EcCCCCCEEEEEEcC-C--------------CEEEEEEC-------------
Confidence 35667776655 499999864 22222 224678999999987 2 14544432
Q ss_pred ccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCceE-EEE
Q 003308 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE-YAI 171 (832)
Q Consensus 96 ~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~t~~~~-~tl 171 (832)
+++|+|||++++++++++.++..|.+++|+ .++|++ +.+++|++||+.++++. +.+
T Consensus 78 --------------------D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i 137 (902)
T 2oaj_A 78 --------------------KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL 137 (902)
T ss_dssp --------------------TCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred --------------------cCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence 278999999999999999999999999997 467777 56889999999988753 111
Q ss_pred ecCCCc-cCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceece
Q 003308 172 LTNPIV-MGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (832)
Q Consensus 172 ~t~~~~-~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasG 250 (832)
...... ....+ ..+++ .-|++.+
T Consensus 138 ~~~~~~~~~~~~------h~~~V----~sl~~sp---------------------------------------------- 161 (902)
T 2oaj_A 138 DNLQKSSFFPAA------RLSPI----VSIQWNP---------------------------------------------- 161 (902)
T ss_dssp CCHHHHHTCSSS------CCCCC----CEEEEET----------------------------------------------
T ss_pred cccccccccccc------CCCCe----EEEEEcc----------------------------------------------
Confidence 000000 00000 00000 1122221
Q ss_pred eeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccC----------
Q 003308 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH---------- 320 (832)
Q Consensus 251 i~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH---------- 320 (832)
++ ...++.+..+|.| |||+.+++++..|..|
T Consensus 162 ---------------------~~-----------------~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~ 202 (902)
T 2oaj_A 162 ---------------------RD-----------------IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDF 202 (902)
T ss_dssp ---------------------TE-----------------EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTT
T ss_pred ---------------------CC-----------------CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccc
Confidence 00 0012334567899 9999999999988876
Q ss_pred --------CCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE--Ee--ccC----------
Q 003308 321 --------KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR--LQ--RGL---------- 378 (832)
Q Consensus 321 --------~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~--l~--rG~---------- 378 (832)
..+|.+++|+|||++|||++.||+ |+|||+.++ ..+.. +. .++
T Consensus 203 ~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~g--------------~~~~~r~l~~~~~~~~~~~~~~~~ 267 (902)
T 2oaj_A 203 SEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANSG--------------HMIMARTVFETEINVPQPDYIRDS 267 (902)
T ss_dssp CCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTTC--------------CEEEEECSSCSCTTSCCTTCCCCC
T ss_pred ccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCC--------------cEEEEEeecccccCCCCCcCCCCC
Confidence 578999999999999999999998 899999876 22221 21 011
Q ss_pred --ccccEEEEEEc----cCC-CEEEEEeCC-----CcEEEEecC
Q 003308 379 --TNAVIQDISFS----DDS-NWIMISSSR-----GTSHLFAIN 410 (832)
Q Consensus 379 --t~a~I~~IaFS----pDg-~~LAsgS~D-----gTVhIwdl~ 410 (832)
+...|.+++|+ ||+ .+|++++.| .++++|++.
T Consensus 268 ~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 268 STNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp SSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred ccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 12359999995 554 577888776 389999863
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.1e-15 Score=183.63 Aligned_cols=210 Identities=13% Similarity=0.195 Sum_probs=147.5
Q ss_pred EEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcccccCCCCCCCCCCCCCCCCCCEEEE
Q 003308 42 DLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHF 121 (832)
Q Consensus 42 ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrl 121 (832)
.++..|.++|+++.+.|+. .+|+.++. +++|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg--------------~~latg~~---------------------------------dg~I~v 35 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYG--------------KRLATCSS---------------------------------DKTIKI 35 (753)
T ss_dssp -----CCCCEEEECCCSSS--------------CCEEEEET---------------------------------TTEEEE
T ss_pred eecccCcceeEEEEECCCC--------------CeEEEEEC---------------------------------CCcEEE
Confidence 4567799999999988743 24554432 278999
Q ss_pred EECC--CCcEEEEEe-CCCCEEEEEEc----CCEEEE-EeCCEEEEEECCCCc--eEEEEecCCCccCCCCCCCCCcccc
Q 003308 122 YSLR--SQSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGIGYG 191 (832)
Q Consensus 122 WDL~--Tg~~V~tL~-f~s~V~sV~~S----~r~LAV-a~~~~I~vwDl~t~~--~~~tl~t~~~~~~~p~~~~~~~~~~ 191 (832)
||+. +++++.++. +..+|.+|+|+ +++|++ +.++.|++||+.+++ ....+..|..
T Consensus 36 wd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~--------------- 100 (753)
T 3jro_A 36 FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA--------------- 100 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS---------------
T ss_pred EecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCC---------------
Confidence 9998 557777776 46799999996 566766 568899999999876 3444433311
Q ss_pred eeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccC
Q 003308 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (832)
Q Consensus 192 p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p 271 (832)
++ ..+++..+. .+.
T Consensus 101 ~V----~~v~~sp~~-------------------------~~~------------------------------------- 114 (753)
T 3jro_A 101 SV----NSVQWAPHE-------------------------YGP------------------------------------- 114 (753)
T ss_dssp CE----EEEEECCGG-------------------------GCS-------------------------------------
T ss_pred Ce----EEEEECCCC-------------------------CCC-------------------------------------
Confidence 11 112232100 000
Q ss_pred CCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCC--cEEEEeccCCCCeEEEEEcC-------------CCCEE
Q 003308 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFRAHKSPISALCFDP-------------SGILL 336 (832)
Q Consensus 272 ~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~--~~l~~~~aH~~pIs~LaFSP-------------dG~lL 336 (832)
.++++..+|.|+|||+.++ .....+.+|..+|.+++|+| +|.+|
T Consensus 115 ---------------------~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l 173 (753)
T 3jro_A 115 ---------------------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173 (753)
T ss_dssp ---------------------EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCE
T ss_pred ---------------------EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEE
Confidence 1234457899999999887 34556779999999999999 69999
Q ss_pred EEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccC---CCEEEEEeCCCcEEEEecCCCC
Q 003308 337 VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD---SNWIMISSSRGTSHLFAINPLG 413 (832)
Q Consensus 337 ATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpD---g~~LAsgS~DgTVhIwdl~~~g 413 (832)
++|+.||+ |++||+..+. .....+..+ .++. ..|.+++|+|+ +++|++++.||+|+|||+....
T Consensus 174 ~sgs~dg~-I~iwd~~~~~----------~~~~~~~~~-~~h~-~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 174 VTGGADNL-VKIWKYNSDA----------QTYVLESTL-EGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp EEEETTSC-EEEEEEETTT----------TEEEEEEEE-CCCS-SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred EEEECCCe-EEEEeccCCc----------ccceeeeee-cCCC-CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 99999998 8999997651 111233344 3443 46999999999 9999999999999999998754
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.68 E-value=3.2e-15 Score=164.95 Aligned_cols=203 Identities=8% Similarity=-0.011 Sum_probs=121.4
Q ss_pred CCCEEEEEECCCCcEEEE--Ee----CCCCEEEEEEcC----------CEEEE-EeCCEEEEEECCCCceEEEEecCCCc
Q 003308 115 VPTVVHFYSLRSQSYVHM--LK----FRSPIYSVRCSS----------RVVAI-CQAAQVHCFDAATLEIEYAILTNPIV 177 (832)
Q Consensus 115 ~~~tVrlWDL~Tg~~V~t--L~----f~s~V~sV~~S~----------r~LAV-a~~~~I~vwDl~t~~~~~tl~t~~~~ 177 (832)
.+++|||||++++++... +. +...|.+|+|++ ++||. +.|++|+|||+.+..++..+..+...
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP 188 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC
Confidence 458999999999987543 21 467899999963 67877 57889999999988877777665321
Q ss_pred cCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCc
Q 003308 178 MGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDL 257 (832)
Q Consensus 178 ~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~ 257 (832)
.+ -++|.++ +..
T Consensus 189 --------------v~-----~v~~~p~---------------------------~~~---------------------- 200 (393)
T 4gq1_A 189 --------------GI-----SVQFRPS---------------------------NPN---------------------- 200 (393)
T ss_dssp --------------EE-----EEEEETT---------------------------EEE----------------------
T ss_pred --------------cE-----EEEECCC---------------------------CCc----------------------
Confidence 11 1334310 000
Q ss_pred cccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEE----------------------
Q 003308 258 GYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA---------------------- 315 (832)
Q Consensus 258 g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~---------------------- 315 (832)
.++++..+|+|+|||+.+++...
T Consensus 201 -----------------------------------~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 201 -----------------------------------QLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp -----------------------------------EEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred -----------------------------------eEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 11233456777888777654322
Q ss_pred ---EeccCCCCeEEEEEc-CCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeE---EEEEeccCccccEEEEEE
Q 003308 316 ---QFRAHKSPISALCFD-PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH---LYRLQRGLTNAVIQDISF 388 (832)
Q Consensus 316 ---~~~aH~~pIs~LaFS-PdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~---l~~l~rG~t~a~I~~IaF 388 (832)
...+|...|.+++|+ |||++|++++.|++ ++|||+..+......... ...... ....+.......+..++|
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANNDYNEISDS-TMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC--------------------CCSCSEEEECSSCCSSCCEE
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCCCceEeee-cCccccEEEccccccccccCcceeEEE
Confidence 234688889999986 89999999999987 899999875211100000 000000 000000000111223445
Q ss_pred cc--CCCEEEEEeCCCcEEEEecCCCCCceeeccCC
Q 003308 389 SD--DSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (832)
Q Consensus 389 Sp--Dg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~ 422 (832)
+| |+.++++++.||+|+|||+.+......+..|.
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~ 359 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG 359 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 44 55677888999999999999877777776663
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.66 E-value=3.8e-15 Score=163.81 Aligned_cols=55 Identities=13% Similarity=0.191 Sum_probs=47.8
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCe-EEEEEcCCCCEEEEEEcCCCEEEEEeC
Q 003308 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPI-SALCFDPSGILLVTASVQGHNINIFKI 351 (832)
Q Consensus 296 s~~~~G~V~IwDl~s~~~l~~~~aH~~pI-s~LaFSPdG~lLATaS~dGt~I~Iwdi 351 (832)
++..||+|+|||+.+++++.+|++|...+ .+++|||||++||||+.|++ |+|||+
T Consensus 300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-IklWd~ 355 (356)
T 2w18_A 300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-IFVYHY 355 (356)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC-EEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-EEEecC
Confidence 34568899999999999999999998765 46999999999999999998 999996
No 124
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.66 E-value=6e-14 Score=156.58 Aligned_cols=239 Identities=15% Similarity=0.101 Sum_probs=158.6
Q ss_pred CcEEEEEec------CCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccc
Q 003308 18 RRVLLLGYR------SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKV 91 (832)
Q Consensus 18 ~~vLl~Gy~------~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~ 91 (832)
.+++.++.. +.+++||++. .+. ..+..|.+.|..+++.|+. ..||.+....
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g-~~~-~~l~~~~~~v~~~~~Spdg--------------~~la~~s~~~------- 200 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDG-YNQ-FVVHRSPQPLMSPAWSPDG--------------SKLAYVTFES------- 200 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTS-CSC-EEEEEESSCEEEEEECTTS--------------SEEEEEECTT-------
T ss_pred CEEEEEEecCCCCccceEEEEcCCC-CCC-EEEeCCCCcceeeEEcCCC--------------CEEEEEEecC-------
Confidence 355555554 4689999974 444 4555688999999999864 1466665321
Q ss_pred cCCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEe----CCEEEEEECCCC
Q 003308 92 QDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ----AAQVHCFDAATL 165 (832)
Q Consensus 92 ~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~r~LAVa~----~~~I~vwDl~t~ 165 (832)
...+|++||++++++.....+...+.+++|+ ++.|+++. ...|++||+.++
T Consensus 201 -----------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 201 -----------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 257 (415)
T ss_dssp -----------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred -----------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence 0168999999999987666678899999997 46677432 346999999988
Q ss_pred ceEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccccc
Q 003308 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (832)
Q Consensus 166 ~~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk 245 (832)
+. ..+..+.. ... .++|+. +|..+
T Consensus 258 ~~-~~l~~~~~------------~~~-------~~~~sp---------------------------dg~~l--------- 281 (415)
T 2hqs_A 258 QI-RQVTDGRS------------NNT-------EPTWFP---------------------------DSQNL--------- 281 (415)
T ss_dssp CE-EECCCCSS------------CEE-------EEEECT---------------------------TSSEE---------
T ss_pred CE-EeCcCCCC------------ccc-------ceEECC---------------------------CCCEE---------
Confidence 75 34433211 001 122221 12111
Q ss_pred ceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeE
Q 003308 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS 325 (832)
Q Consensus 246 ~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs 325 (832)
+.+ + ..+....|.+||+.+++. ..+..|...+.
T Consensus 282 --~~~------------------------------s--------------~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~ 314 (415)
T 2hqs_A 282 --AFT------------------------------S--------------DQAGRPQVYKVNINGGAP-QRITWEGSQNQ 314 (415)
T ss_dssp --EEE------------------------------E--------------CTTSSCEEEEEETTSSCC-EECCCSSSEEE
T ss_pred --EEE------------------------------E--------------CCCCCcEEEEEECCCCCE-EEEecCCCccc
Confidence 000 0 000112688889988764 45667778899
Q ss_pred EEEEcCCCCEEEEEEcC-C-CEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCC-
Q 003308 326 ALCFDPSGILLVTASVQ-G-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG- 402 (832)
Q Consensus 326 ~LaFSPdG~lLATaS~d-G-t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~Dg- 402 (832)
+++|||||++||+++.+ | ..|.+||+.++ .. ..+..+ ..+.+++|+|||++|++++.++
T Consensus 315 ~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~--------------~~-~~l~~~---~~~~~~~~spdg~~l~~~s~~~~ 376 (415)
T 2hqs_A 315 DADVSSDGKFMVMVSSNGGQQHIAKQDLATG--------------GV-QVLSST---FLDETPSLAPNGTMVIYSSSQGM 376 (415)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEETTTC--------------CE-EECCCS---SSCEEEEECTTSSEEEEEEEETT
T ss_pred CeEECCCCCEEEEEECcCCceEEEEEECCCC--------------CE-EEecCC---CCcCCeEEcCCCCEEEEEEcCCC
Confidence 99999999999988865 2 35899999876 11 233222 2589999999999999999887
Q ss_pred --cEEEEecCCCCCceeeccCCCC
Q 003308 403 --TSHLFAINPLGGSVNFQPTDAN 424 (832)
Q Consensus 403 --TVhIwdl~~~g~~~~~~~H~~~ 424 (832)
.|.+||+. .+....+..|...
T Consensus 377 ~~~l~~~d~~-g~~~~~l~~~~~~ 399 (415)
T 2hqs_A 377 GSVLNLVSTD-GRFKARLPATDGQ 399 (415)
T ss_dssp EEEEEEEETT-SCCEEECCCSSSE
T ss_pred ccEEEEEECC-CCcEEEeeCCCCC
Confidence 79999986 4455667777543
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.66 E-value=3.8e-14 Score=155.50 Aligned_cols=238 Identities=13% Similarity=0.122 Sum_probs=158.0
Q ss_pred CcEEEEEecC-CeEEEEeccCCCeeEEe-----eecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccc
Q 003308 18 RRVLLLGYRS-GFQVWDVEEADNVHDLV-----SRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKV 91 (832)
Q Consensus 18 ~~vLl~Gy~~-G~qVWdv~~~~~~~ell-----S~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~ 91 (832)
+.+++.+..+ .+++||+.. ++....+ ..|.+.|..+.+.|+. .+++.+..
T Consensus 134 ~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~~s~~~--------- 189 (433)
T 3bws_A 134 TRLAIPLLEDEGMDVLDINS-GQTVRLSPPEKYKKKLGFVETISIPEHN--------------ELWVSQMQ--------- 189 (433)
T ss_dssp SEEEEEBTTSSSEEEEETTT-CCEEEECCCHHHHTTCCEEEEEEEGGGT--------------EEEEEEGG---------
T ss_pred CeEEEEeCCCCeEEEEECCC-CeEeeecCcccccccCCceeEEEEcCCC--------------EEEEEECC---------
Confidence 5666666544 499999986 4444422 2567788888886532 13332221
Q ss_pred cCCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEE-EE-eCCEEEEEECCCCc
Q 003308 92 QDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVA-IC-QAAQVHCFDAATLE 166 (832)
Q Consensus 92 ~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f-~s~V~sV~~S--~r~LA-Va-~~~~I~vwDl~t~~ 166 (832)
+++|++||+++++.+.++.. ...+.+++++ ++.++ ++ .++.|++||+.+++
T Consensus 190 ------------------------d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 190 ------------------------ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp ------------------------GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred ------------------------CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 17899999999999999875 5689999997 35554 44 47899999999988
Q ss_pred eEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003308 167 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (832)
Q Consensus 167 ~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~ 246 (832)
.+..+..+.. + ..+++.. +|..+
T Consensus 246 ~~~~~~~~~~---------------~-----~~~~~~~---------------------------~g~~l---------- 268 (433)
T 3bws_A 246 EIRKTDKIGL---------------P-----RGLLLSK---------------------------DGKEL---------- 268 (433)
T ss_dssp EEEECCCCSE---------------E-----EEEEECT---------------------------TSSEE----------
T ss_pred EEEEecCCCC---------------c-----eEEEEcC---------------------------CCCEE----------
Confidence 7665533210 1 1233321 11111
Q ss_pred eeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEE
Q 003308 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA 326 (832)
Q Consensus 247 lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~ 326 (832)
+.+. .+ .+.+ ...+|.|++||+.+++.+..+ .|...+.+
T Consensus 269 -~~~~-----~~----------------------------~~~~------~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~ 307 (433)
T 3bws_A 269 -YIAQ-----FS----------------------------ASNQ------ESGGGRLGIYSMDKEKLIDTI-GPPGNKRH 307 (433)
T ss_dssp -EEEE-----EE----------------------------SCTT------CSCCEEEEEEETTTTEEEEEE-EEEECEEE
T ss_pred -EEEE-----CC----------------------------CCcc------ccCCCeEEEEECCCCcEEeec-cCCCCcce
Confidence 1000 00 0000 025789999999999887765 45568899
Q ss_pred EEEcCCCCEE-EEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeC-----
Q 003308 327 LCFDPSGILL-VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS----- 400 (832)
Q Consensus 327 LaFSPdG~lL-ATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~----- 400 (832)
++|+|+|+.| ++++.+|+ |++||+.++ ..+..+.. ...+.+++|+|||++|++++.
T Consensus 308 ~~~~~~g~~l~~~~~~~~~-v~v~d~~~~--------------~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~~ 369 (433)
T 3bws_A 308 IVSGNTENKIYVSDMCCSK-IEVYDLKEK--------------KVQKSIPV---FDKPNTIALSPDGKYLYVSCRGPNHP 369 (433)
T ss_dssp EEECSSTTEEEEEETTTTE-EEEEETTTT--------------EEEEEEEC---SSSEEEEEECTTSSEEEEEECCCCCT
T ss_pred EEECCCCCEEEEEecCCCE-EEEEECCCC--------------cEEEEecC---CCCCCeEEEcCCCCEEEEEecCCCcc
Confidence 9999999754 66677876 999999876 33444432 235899999999999999887
Q ss_pred ----------CCcEEEEecCCCCCceeec
Q 003308 401 ----------RGTSHLFAINPLGGSVNFQ 419 (832)
Q Consensus 401 ----------DgTVhIwdl~~~g~~~~~~ 419 (832)
||+|++||+.+......+.
T Consensus 370 ~~~~~~~g~~dg~v~~~d~~~~~~~~~~~ 398 (433)
T 3bws_A 370 TEGYLKKGLVLGKVYVIDTTTDTVKEFWE 398 (433)
T ss_dssp TTCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred ccccccccccceEEEEEECCCCcEEEEec
Confidence 5799999998754333443
No 126
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.61 E-value=5.3e-13 Score=139.92 Aligned_cols=99 Identities=10% Similarity=0.121 Sum_probs=77.4
Q ss_pred eEEEEECCCCcEE-EEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCcc
Q 003308 302 MVIVRDIVSKNVI-AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (832)
Q Consensus 302 ~V~IwDl~s~~~l-~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~ 380 (832)
.|.+||+.+++.. ..+..|...+.+++|+|||++|+++ +++ |.+||+.++ ..+..+..+
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~~~d~~~~--------------~~~~~~~~~--- 279 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDLEKN--------------ASIKRVPLP--- 279 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEETTTT--------------EEEEEEECS---
T ss_pred ceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EEEEECCCC--------------cCcceecCC---
Confidence 6899999998764 3345677788899999999999988 455 899999876 333444322
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecc
Q 003308 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (832)
Q Consensus 381 a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~ 420 (832)
..+.+++|+|||++|++++.+++|+|||+.+......+..
T Consensus 280 ~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 3478999999999999999999999999988655555543
No 127
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.59 E-value=4.9e-13 Score=141.25 Aligned_cols=272 Identities=8% Similarity=0.063 Sum_probs=159.5
Q ss_pred CcEEEEEe-cCCeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~Gy-~~G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
..+++.+. ++.+.+||++. ++....+.....++ .+.+.|+. ..|+++..+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~-~~~~s~dg--------------~~l~~~~~~------------- 60 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDT-LEILNQITLGYDFV-DTAITSDC--------------SNVVVTSDF------------- 60 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTT-CCEEEEEECCCCEE-EEEECSSS--------------CEEEEEEST-------------
T ss_pred CEEEEEecCCCeEEEEeCcc-cceeeeEEccCCcc-eEEEcCCC--------------CEEEEEeCC-------------
Confidence 45555554 45599999986 55655555445555 77776642 134444431
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEECCCCcE-EEEEeCCCCEEE-EEEc--CCEEEEEeCC----EEEEEECCCCceE
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSY-VHMLKFRSPIYS-VRCS--SRVVAICQAA----QVHCFDAATLEIE 168 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~-V~tL~f~s~V~s-V~~S--~r~LAVa~~~----~I~vwDl~t~~~~ 168 (832)
.++|.+||+.+++. +..+........ ++++ ++.|+++... +|++||+.+++.+
T Consensus 61 -------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~ 121 (331)
T 3u4y_A 61 -------------------CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI 121 (331)
T ss_dssp -------------------TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE
T ss_pred -------------------CCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE
Confidence 16799999999998 777776554445 8887 4677765555 8999999999887
Q ss_pred EEEecCCCccCCCCCCCCCcccceeeecc--ceEEeeCCCceecCCCccCCcccccccccccccCCCcc-eeeeeccccc
Q 003308 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSR-VAHYAKESSK 245 (832)
Q Consensus 169 ~tl~t~~~~~~~p~~~~~~~~~~p~Alg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~-V~~~A~~ssk 245 (832)
..+..... ...++++| ++|..+.. .+.. +..|..+...
T Consensus 122 ~~~~~~~~-------------~~~~~~spdg~~l~~~~~--------------------------~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 122 STIPIPYD-------------AVGIAISPNGNGLILIDR--------------------------SSANTVRRFKIDADG 162 (331)
T ss_dssp EEEECCTT-------------EEEEEECTTSSCEEEEEE--------------------------TTTTEEEEEEECTTC
T ss_pred EEEECCCC-------------ccceEECCCCCEEEEEec--------------------------CCCceEEEEEECCCC
Confidence 77654321 12345554 34443310 0011 2222211111
Q ss_pred ceece-eeeccCccccccccccccccCCCcCcccc-ccCCCCCCCcccccccccCCCCeEEEEECCCCcE---EEEeccC
Q 003308 246 HLAAG-IVNLGDLGYKKLSQYCSEFLPDSQNSLQS-AIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV---IAQFRAH 320 (832)
Q Consensus 246 ~lasG-i~~lGd~g~~~ls~y~~~~~p~~~~si~s-a~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~---l~~~~aH 320 (832)
.+... ...+ +.+...... .+++ |. ..++....++.|.+||+.+++. +..+..+
T Consensus 163 ~~~~~~~~~~----------------~~~~~~~~~~~spd----g~--~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~ 220 (331)
T 3u4y_A 163 VLFDTGQEFI----------------SGGTRPFNITFTPD----GN--FAFVANLIGNSIGILETQNPENITLLNAVGTN 220 (331)
T ss_dssp CEEEEEEEEE----------------CSSSSEEEEEECTT----SS--EEEEEETTTTEEEEEECSSTTSCEEEEEEECS
T ss_pred cEeecCCccc----------------cCCCCccceEECCC----CC--EEEEEeCCCCeEEEEECCCCcccceeeeccCC
Confidence 01000 0000 000000000 0111 11 0123445678999999999888 8888765
Q ss_pred CCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC--cccc---EEEEEEccCCCEE
Q 003308 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL--TNAV---IQDISFSDDSNWI 395 (832)
Q Consensus 321 ~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~--t~a~---I~~IaFSpDg~~L 395 (832)
..+..++|+|||++|+.++.....|.+||+.++ ....+..+..+. .... ...++|+|||++|
T Consensus 221 -~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 287 (331)
T 3u4y_A 221 -NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG------------TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL 287 (331)
T ss_dssp -SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT------------EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE
T ss_pred -CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC------------ceeeecccccccccCCCCcccccceEECCCCCEE
Confidence 556889999999988776654445999999876 222234443331 1111 3568999999998
Q ss_pred EEEeC-CCcEEEEecCC
Q 003308 396 MISSS-RGTSHLFAINP 411 (832)
Q Consensus 396 AsgS~-DgTVhIwdl~~ 411 (832)
++++. +++|.|||+..
T Consensus 288 ~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 288 FISANISRELKVFTISG 304 (331)
T ss_dssp EEEETTTTEEEEEETTS
T ss_pred EEecCCCCcEEEEEecC
Confidence 77665 56999999975
No 128
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.2e-14 Score=165.39 Aligned_cols=92 Identities=13% Similarity=0.157 Sum_probs=75.8
Q ss_pred CCCCeEEEEECCCCc---EEEEec-cCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003308 298 DNVGMVIVRDIVSKN---VIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (832)
Q Consensus 298 ~~~G~V~IwDl~s~~---~l~~~~-aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~ 373 (832)
..|++|++||+.+++ +..+++ +|...|.+++|+ |+.||+++ +|+ |++||+..+ ++..
T Consensus 199 s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~~~---------------~~~~ 259 (588)
T 2j04_A 199 LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLKNY---------------SISS 259 (588)
T ss_dssp ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETTTT---------------EEEE
T ss_pred eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECCCC---------------eEEE
Confidence 457899999999877 345674 888999999999 79999998 565 999999875 2223
Q ss_pred EeccCccccEEEEEE--ccCCCEEEEEeCCCcEEEEecC
Q 003308 374 LQRGLTNAVIQDISF--SDDSNWIMISSSRGTSHLFAIN 410 (832)
Q Consensus 374 l~rG~t~a~I~~IaF--SpDg~~LAsgS~DgTVhIwdl~ 410 (832)
+..|+ .+.|++|+| |||++.|++++.||+ +||.++
T Consensus 260 ~~~gh-~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 260 LKTGS-LENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EECSC-CSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEcCC-CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 33364 456999999 999999999999999 999987
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.55 E-value=2.1e-12 Score=150.02 Aligned_cols=248 Identities=14% Similarity=0.118 Sum_probs=157.4
Q ss_pred CcEEEEEecC-CeEEEEeccCCCeeEEeeecCCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCCcc
Q 003308 18 RRVLLLGYRS-GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (832)
Q Consensus 18 ~~vLl~Gy~~-G~qVWdv~~~~~~~ellS~~dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg~~ 96 (832)
.++++.++.. .+.|||... +++...+..... +..+.+.|+.. .|++++.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t-~~~~~~i~~g~~-~~~v~~spdg~--------------~l~v~~~-------------- 198 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDS-KKIVKVIDTGYA-VHISRMSASGR--------------YLLVIGR-------------- 198 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTT-CCEEEEEECSTT-EEEEEECTTSC--------------EEEEEET--------------
T ss_pred CEEEEEEcCCCeEEEEECCC-ceEEEEEecCcc-cceEEECCCCC--------------EEEEECC--------------
Confidence 5677777655 499999986 555555553333 78888887531 3554442
Q ss_pred cccCCCCCCCCCCCCCCCCCCEEEEEEC--CCCcEEEEEeCCCCEEEEEEcC------CEEEEE--eCCEEEEEECCCCc
Q 003308 97 TACNGTSANYHDLGNGSSVPTVVHFYSL--RSQSYVHMLKFRSPIYSVRCSS------RVVAIC--QAAQVHCFDAATLE 166 (832)
Q Consensus 97 ~~~~g~~~~~h~~g~~~~~~~tVrlWDL--~Tg~~V~tL~f~s~V~sV~~S~------r~LAVa--~~~~I~vwDl~t~~ 166 (832)
+++|++||+ .+++++.++.....++.|+|++ ++|+++ .+++|.|||..+++
T Consensus 199 -------------------d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 199 -------------------DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp -------------------TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred -------------------CCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 167999999 9999999999888889999985 577664 47999999999999
Q ss_pred eEEEEecCCCccCCCCCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccc
Q 003308 167 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (832)
Q Consensus 167 ~~~tl~t~~~~~~~p~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~ 246 (832)
++.++.+...... . .+|... ..+...+.
T Consensus 260 ~~~~i~~~g~~~~------------~-------~~~~~~----------------------------~~v~~i~~----- 287 (543)
T 1nir_A 260 PKQIVSTRGMTVD------------T-------QTYHPE----------------------------PRVAAIIA----- 287 (543)
T ss_dssp EEEEEECCEECSS------------S-------CCEESC----------------------------CCEEEEEE-----
T ss_pred cceeecccCcccC------------c-------cccccC----------------------------CceEEEEE-----
Confidence 9988865421000 0 001100 00000000
Q ss_pred eeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEE--EeccCCCCe
Q 003308 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA--QFRAHKSPI 324 (832)
Q Consensus 247 lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~--~~~aH~~pI 324 (832)
.|++ . ..+++...+|.|.+||+.+.+.+. .+. +...+
T Consensus 288 -----------------------s~~~--------------~---~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~ 326 (543)
T 1nir_A 288 -----------------------SHEH--------------P---EFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFL 326 (543)
T ss_dssp -----------------------CSSS--------------S---EEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSC
T ss_pred -----------------------CCCC--------------C---EEEEEECCCCeEEEEEecCCCcceeEEec-cCcCc
Confidence 0000 0 001223457899999998866444 443 55567
Q ss_pred EEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccc--cEEEEEEccC-CCEEEEEe-C
Q 003308 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA--VIQDISFSDD-SNWIMISS-S 400 (832)
Q Consensus 325 s~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a--~I~~IaFSpD-g~~LAsgS-~ 400 (832)
..++|+|||++|++++.+...|.|||+.++ ..+..+.-|..++ ....+ ++|+ ++.+++++ .
T Consensus 327 ~~~~~spdg~~l~va~~~~~~v~v~D~~tg--------------~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~ 391 (543)
T 1nir_A 327 HDGGWDSSHRYFMTAANNSNKVAVIDSKDR--------------RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLG 391 (543)
T ss_dssp CCEEECTTSCEEEEEEGGGTEEEEEETTTT--------------EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSS
T ss_pred cCceECCCCCEEEEEecCCCeEEEEECCCC--------------eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCC
Confidence 889999999987766653334999999987 4444554332222 22223 4777 66666665 5
Q ss_pred CCcEEEEecCC-------CCCceeeccCC
Q 003308 401 RGTSHLFAINP-------LGGSVNFQPTD 422 (832)
Q Consensus 401 DgTVhIwdl~~-------~g~~~~~~~H~ 422 (832)
|++|.||++.+ .....++.+|.
T Consensus 392 d~~V~v~d~~~~~~~~~~~~~v~~l~~~g 420 (543)
T 1nir_A 392 DGSISLIGTDPKNHPQYAWKKVAELQGQG 420 (543)
T ss_dssp SSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred CceEEEEEeCCCCCchhcCeEEEEEEcCC
Confidence 89999999988 44445666663
No 130
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3e-14 Score=165.65 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=82.8
Q ss_pred cccCCCCeEEEEECCCCc-------EEEEe----ccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccC
Q 003308 295 PDADNVGMVIVRDIVSKN-------VIAQF----RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD 363 (832)
Q Consensus 295 ~s~~~~G~V~IwDl~s~~-------~l~~~----~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~ 363 (832)
++++.||+|+|||+.++. .+.+| .+|...|.+++|+||| ||+++.|++ |++||+....
T Consensus 145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~-------- 213 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASS-------- 213 (588)
T ss_dssp EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSS--------
T ss_pred EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCc--------
Confidence 345678999999999886 36777 6777899999999999 788888987 9999997751
Q ss_pred CCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccCCCCc
Q 003308 364 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 425 (832)
Q Consensus 364 ~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H~~~~ 425 (832)
......++..++ ...|.+|+|+ |++||+++ +++|++|++..........+|...+
T Consensus 214 ---~~~~~~tL~~~h-~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V 268 (588)
T 2j04_A 214 ---HQPVSRMIQNAS-RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENF 268 (588)
T ss_dssp ---SCCCEEEEECCC-SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCC
T ss_pred ---cccceeeecccc-cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceE
Confidence 001123443343 3469999999 68999997 6999999998643323333675433
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.52 E-value=2.1e-12 Score=144.07 Aligned_cols=101 Identities=20% Similarity=0.179 Sum_probs=74.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~d-Gt-~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
..|.+||+.++++ ..+..|...+.+++|+|||++|++++.+ |. .|.+||+.++ ... .+..
T Consensus 247 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~------------~~~---~l~~-- 308 (415)
T 2hqs_A 247 LNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG------------APQ---RITW-- 308 (415)
T ss_dssp CEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS------------CCE---ECCC--
T ss_pred ceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC------------CEE---EEec--
Confidence 4699999998876 6788898999999999999999988864 42 3666787765 111 2211
Q ss_pred ccccEEEEEEccCCCEEEEEeCC---CcEEEEecCCCCCceeecc
Q 003308 379 TNAVIQDISFSDDSNWIMISSSR---GTSHLFAINPLGGSVNFQP 420 (832)
Q Consensus 379 t~a~I~~IaFSpDg~~LAsgS~D---gTVhIwdl~~~g~~~~~~~ 420 (832)
....+.+++|||||++|++++.+ .+|++||+.... ...+..
T Consensus 309 ~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~-~~~l~~ 352 (415)
T 2hqs_A 309 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLSS 352 (415)
T ss_dssp SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-EEECCC
T ss_pred CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC-EEEecC
Confidence 12358899999999999998875 589999997643 334433
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.50 E-value=1.8e-11 Score=128.65 Aligned_cols=103 Identities=8% Similarity=0.182 Sum_probs=68.4
Q ss_pred CCCeEEEEECCC-CcEEE----EeccC-CCCeEEEEEcCCCCEEEEEE-cCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003308 299 NVGMVIVRDIVS-KNVIA----QFRAH-KSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (832)
Q Consensus 299 ~~G~V~IwDl~s-~~~l~----~~~aH-~~pIs~LaFSPdG~lLATaS-~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l 371 (832)
.++.|.+||+.+ ++... .+..+ ...+.+++|+|||++|+.++ .+++ |.+||+... . +....+
T Consensus 149 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~-~---------g~~~~~ 217 (343)
T 1ri6_A 149 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDP-H---------GNIECV 217 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCT-T---------SCCEEE
T ss_pred CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCC-C---------CcEEEE
Confidence 456899999987 65432 33333 34788999999999876666 5555 999999642 0 011222
Q ss_pred EEEe---ccCc-cccEEEEEEccCCCEEEEEe-CCCcEEEEecCCC
Q 003308 372 YRLQ---RGLT-NAVIQDISFSDDSNWIMISS-SRGTSHLFAINPL 412 (832)
Q Consensus 372 ~~l~---rG~t-~a~I~~IaFSpDg~~LAsgS-~DgTVhIwdl~~~ 412 (832)
..+. .++. ...+.+++|+|||++|+++. .+++|++|++...
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~ 263 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED 263 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC
Confidence 2221 1211 12377899999999887554 7899999999853
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.50 E-value=2e-12 Score=131.76 Aligned_cols=99 Identities=11% Similarity=0.033 Sum_probs=71.2
Q ss_pred CCCeEEEEEC--CCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEc-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003308 299 NVGMVIVRDI--VSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (832)
Q Consensus 299 ~~G~V~IwDl--~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~-dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~ 375 (832)
.++.++||++ .++ ....+..|...+.+++|+|||++|+.++. ++. ++||++.... ..+..+.
T Consensus 149 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~-------------~~~~~~~ 213 (297)
T 2ojh_A 149 RDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDG-------------SSVERIT 213 (297)
T ss_dssp ETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTS-------------SCEEECC
T ss_pred CCCceEEEEEECCCC-cceEcccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCC-------------CCcEEEe
Confidence 3456788875 444 34667788889999999999998887764 766 8999886320 1222332
Q ss_pred ccCccccEEEEEEccCCCEEEEEeCC-----------CcEEEEecCCCCC
Q 003308 376 RGLTNAVIQDISFSDDSNWIMISSSR-----------GTSHLFAINPLGG 414 (832)
Q Consensus 376 rG~t~a~I~~IaFSpDg~~LAsgS~D-----------gTVhIwdl~~~g~ 414 (832)
. + ...+.+++|+|||++|++++.+ +.|.+||+.....
T Consensus 214 ~-~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 214 D-S-AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp C-C-SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred c-C-CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 2 1 2358899999999999998876 5699999976533
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.50 E-value=2.9e-11 Score=128.05 Aligned_cols=180 Identities=12% Similarity=0.145 Sum_probs=124.8
Q ss_pred CEEEEEECCCCcEEEEEeCCC----------CEEEEEEc--CCEEEEEe---CCEEEEEECCCCceEEEEecCCCccCCC
Q 003308 117 TVVHFYSLRSQSYVHMLKFRS----------PIYSVRCS--SRVVAICQ---AAQVHCFDAATLEIEYAILTNPIVMGHP 181 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s----------~V~sV~~S--~r~LAVa~---~~~I~vwDl~t~~~~~tl~t~~~~~~~p 181 (832)
++|.+||+++++.+.++.... .+.++.++ ++.+.++. ++.|++||+.+++.+..+..... .
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~- 186 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK---M- 186 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT---T-
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC---c-
Confidence 689999999999999998743 26889996 46666643 67899999999988777642210 0
Q ss_pred CCCCCCcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccc
Q 003308 182 SAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKK 261 (832)
Q Consensus 182 ~~~~~~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ 261 (832)
+ .-++++. +|..+
T Consensus 187 ----------~-----~~~~~s~---------------------------dg~~l------------------------- 199 (353)
T 3vgz_A 187 ----------S-----TGLALDS---------------------------EGKRL------------------------- 199 (353)
T ss_dssp ----------C-----CCCEEET---------------------------TTTEE-------------------------
T ss_pred ----------c-----ceEEECC---------------------------CCCEE-------------------------
Confidence 0 1122221 11111
Q ss_pred cccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEecc----CCCCeEEEEEcCCCCEEE
Q 003308 262 LSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA----HKSPISALCFDPSGILLV 337 (832)
Q Consensus 262 ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~a----H~~pIs~LaFSPdG~lLA 337 (832)
..+..++.|.+||+.+++.+..+.. +...+..++|+|||++|+
T Consensus 200 ---------------------------------~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 200 ---------------------------------YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp ---------------------------------EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred ---------------------------------EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 0112357899999999998888774 556788999999999888
Q ss_pred EEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCCce
Q 003308 338 TASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSV 416 (832)
Q Consensus 338 TaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS-~DgTVhIwdl~~~g~~~ 416 (832)
.++.+...|.+||+.++ ..+..+.-+. -..++|+|||+++++++ .+++|++||+.+.....
T Consensus 247 ~~~~~~~~v~~~d~~~~--------------~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRNG--------------NILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK 308 (353)
T ss_dssp EEESSSSEEEEEETTTC--------------CEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEeCCCCEEEEEECCCC--------------cEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 87776456999999876 2333443232 24699999999776666 68999999997754333
Q ss_pred ee
Q 003308 417 NF 418 (832)
Q Consensus 417 ~~ 418 (832)
.+
T Consensus 309 ~~ 310 (353)
T 3vgz_A 309 TF 310 (353)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.49 E-value=4.4e-12 Score=147.31 Aligned_cols=107 Identities=9% Similarity=0.067 Sum_probs=84.0
Q ss_pred CCCeEEEEECCC-------CcEEEEeccCCCCeEEEEEcCCCCEEEEEEc-------CCCEEEEEeCCCCCCCCCCccCC
Q 003308 299 NVGMVIVRDIVS-------KNVIAQFRAHKSPISALCFDPSGILLVTASV-------QGHNINIFKIIPGILGTSSACDA 364 (832)
Q Consensus 299 ~~G~V~IwDl~s-------~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~-------dGt~I~Iwdi~t~~~~~~s~~~~ 364 (832)
.+++|.|||+.+ .+++.+++.|...+..|+|+|||++|++++. +++ |.|||+.++.
T Consensus 391 ~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~-v~v~d~~~~~--------- 460 (543)
T 1nir_A 391 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLD--------- 460 (543)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC-EEEEETTCTT---------
T ss_pred CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce-EEEEECCCCC---------
Confidence 578999999998 8999999999988999999999999999872 445 9999999861
Q ss_pred CCceeEEEE-Eec------cCccccEEEEEEccCCCEEEEEe-----CCCcEEEEecCCCCCceeecc
Q 003308 365 GTSYVHLYR-LQR------GLTNAVIQDISFSDDSNWIMISS-----SRGTSHLFAINPLGGSVNFQP 420 (832)
Q Consensus 365 ~~~~~~l~~-l~r------G~t~a~I~~IaFSpDg~~LAsgS-----~DgTVhIwdl~~~g~~~~~~~ 420 (832)
.+++ +.- +.....+..++|+|||++|.++. .|++|.|||..+......++.
T Consensus 461 -----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 461 -----AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp -----SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred -----CCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 1111 100 01123588999999999999772 489999999999876666654
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.47 E-value=1.6e-12 Score=152.94 Aligned_cols=233 Identities=12% Similarity=0.097 Sum_probs=133.2
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCC-----CceEEEEecCCC-c-cCCCCCCCCC
Q 003308 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAAT-----LEIEYAILTNPI-V-MGHPSAGGIG 187 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~r~LAVa~~~~I~vwDl~t-----~~~~~tl~t~~~-~-~~~p~~~~~~ 187 (832)
++|++||+.+++..........+.+++|+ ++.||.+.+++|++||+.+ ++.......... . .+.+--..-.
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~ 180 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREF 180 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCT
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhc
Confidence 57999999999887766677788889997 4788888899999999998 765432211100 0 0000000000
Q ss_pred cccceeeecc--ceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccc
Q 003308 188 IGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQY 265 (832)
Q Consensus 188 ~~~~p~Alg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y 265 (832)
-....++++| ++|||+... .+.+ + . +- +...+. .+.....+
T Consensus 181 ~~~~~~~~SpDg~~la~~~~d-----~~~~-~------------------~--~~----------~~~~~~-~~~~~~~~ 223 (706)
T 2z3z_A 181 GIEKGTFWSPKGSCLAFYRMD-----QSMV-K------------------P--TP----------IVDYHP-LEAESKPL 223 (706)
T ss_dssp TCCCSEEECTTSSEEEEEEEE-----CTTS-C------------------C--EE----------EEECCS-SSCEEEEE
T ss_pred CCCceEEECCCCCEEEEEEEC-----CCCC-c------------------e--EE----------eeccCC-CCCceEEe
Confidence 0012345554 667765310 0000 0 0 00 000000 00000000
Q ss_pred cccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEEcCC
Q 003308 266 CSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQG 343 (832)
Q Consensus 266 ~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~--aH~~pIs~LaFSPdG~lLATaS~dG 343 (832)
. .| .+ | ....+..|.+||+.+++...... .|...|.+++|||||++|++++.++
T Consensus 224 ~---y~---------~~-----g-------~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 279 (706)
T 2z3z_A 224 Y---YP---------MA-----G-------TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR 279 (706)
T ss_dssp C---CC---------BT-----T-------SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT
T ss_pred e---CC---------CC-----C-------CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC
Confidence 0 00 00 0 12345689999999987654442 5777899999999999999988765
Q ss_pred ----CEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEcc--CCCEEEEEeCCCcEEEEecCCCCC-ce
Q 003308 344 ----HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGG-SV 416 (832)
Q Consensus 344 ----t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSp--Dg~~LAsgS~DgTVhIwdl~~~g~-~~ 416 (832)
..|.+||+.++. ....+...........+.+++||| ||++|++++.|++++||.+...++ ..
T Consensus 280 ~~~~~~v~~~d~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~ 348 (706)
T 2z3z_A 280 AQNECKVNAYDAETGR-----------FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR 348 (706)
T ss_dssp TSCEEEEEEEETTTCC-----------EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE
T ss_pred CCCeeEEEEEECCCCc-----------eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE
Confidence 248999987650 112222211110001146789999 999999999999999999974333 33
Q ss_pred eeccC
Q 003308 417 NFQPT 421 (832)
Q Consensus 417 ~~~~H 421 (832)
.+..|
T Consensus 349 ~l~~~ 353 (706)
T 2z3z_A 349 QVTKG 353 (706)
T ss_dssp ECCCS
T ss_pred ecCCC
Confidence 44443
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.45 E-value=2.8e-11 Score=127.07 Aligned_cols=103 Identities=11% Similarity=0.152 Sum_probs=68.8
Q ss_pred CCCeEEEEECCC--CcE--EEEec----cC--CCCeEEEEEcCCCCEEEEEE-cCCCEEEEEeCCCCCCCCCCccCCCCc
Q 003308 299 NVGMVIVRDIVS--KNV--IAQFR----AH--KSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTS 367 (832)
Q Consensus 299 ~~G~V~IwDl~s--~~~--l~~~~----aH--~~pIs~LaFSPdG~lLATaS-~dGt~I~Iwdi~t~~~~~~s~~~~~~~ 367 (832)
.++.|.+||+.. ++. +..+. .| ...+.+++|+|||++|+.+. .++. |.+||+... .+.
T Consensus 198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~----------~~~ 266 (343)
T 1ri6_A 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSED----------GSV 266 (343)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTT----------SCC
T ss_pred CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCC----------CCc
Confidence 456899999853 332 22332 11 23567899999999887555 5665 999999742 001
Q ss_pred eeEEEEEeccCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCCc
Q 003308 368 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGS 415 (832)
Q Consensus 368 ~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS-~DgTVhIwdl~~~g~~ 415 (832)
...+..+..+ ..+.+++|+|||++|++++ .+++|.||++....+.
T Consensus 267 ~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 267 LSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp EEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred eEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 2333344322 2378899999999999888 5899999988765443
No 138
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.44 E-value=2.6e-11 Score=127.98 Aligned_cols=94 Identities=7% Similarity=0.071 Sum_probs=69.3
Q ss_pred EECCCCcE-EEEeccCCCCeEEEEEcC-CCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccE
Q 003308 306 RDIVSKNV-IAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVI 383 (832)
Q Consensus 306 wDl~s~~~-l~~~~aH~~pIs~LaFSP-dG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I 383 (832)
+|+.+++. +..+..+...+..++|+| ||++|+++ +++ |.+||+.++ ..+..+..+ ..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~--------------~~~~~~~~~---~~~ 297 (349)
T 1jmx_B 238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQR--------------KLIKAANLD---HTY 297 (349)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTT--------------EEEEEEECS---SCC
T ss_pred EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccC--------------eEEEEEcCC---CCc
Confidence 66666543 223345666789999999 99999988 555 899999876 343444333 237
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003308 384 QDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (832)
Q Consensus 384 ~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~ 419 (832)
.+++|+|||++|++++.+++|+|||+.+......+.
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred cceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 789999999999998889999999998765444443
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.43 E-value=5.9e-12 Score=148.80 Aligned_cols=107 Identities=11% Similarity=0.043 Sum_probs=74.2
Q ss_pred eEEEEECCC-CcEEEEec--cCCCCeEEEEEcCCCCEEEEEEcC----CCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003308 302 MVIVRDIVS-KNVIAQFR--AHKSPISALCFDPSGILLVTASVQ----GHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (832)
Q Consensus 302 ~V~IwDl~s-~~~l~~~~--aH~~pIs~LaFSPdG~lLATaS~d----Gt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l 374 (832)
.|.+||+.+ +++..... .|...+..++| |||++|+.++.+ ...|.+||+.++ ....+...
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g------------~~~~~~~~ 330 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN------------QQRVLAHE 330 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC------------CEEEEEEE
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC------------ceEEEEEc
Confidence 688899998 87655443 47788999999 999999987641 134899999876 22333332
Q ss_pred eccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003308 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (832)
Q Consensus 375 ~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H 421 (832)
........+.+++|||||+++++++.||+++||.+...++...+..|
T Consensus 331 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~ 377 (741)
T 2ecf_A 331 TSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHG 377 (741)
T ss_dssp ECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCS
T ss_pred CCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeec
Confidence 21100002468999999999999999999999998754444444444
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.41 E-value=2.4e-11 Score=123.77 Aligned_cols=188 Identities=11% Similarity=0.107 Sum_probs=122.3
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCC-CceEEEEecCCCccCCCCCCCCCcccc
Q 003308 115 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAGGIGIGYG 191 (832)
Q Consensus 115 ~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~r~LAVa~~~~I~vwDl~t-~~~~~tl~t~~~~~~~p~~~~~~~~~~ 191 (832)
.+++|++||+.+++....+.+...|.+++++ +++|+++.++.|++||+.+ ++.......+... .+.
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-----------~~~ 88 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATI-----------CNN 88 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCC-----------BCS
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccc-----------ccc
Confidence 4589999999999988877888899999997 5788888899999999998 7654333222100 011
Q ss_pred eeeecc--ceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccc
Q 003308 192 PLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (832)
Q Consensus 192 p~Alg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~ 269 (832)
.++++| ++|++...
T Consensus 89 ~~~~spdg~~l~~~~~---------------------------------------------------------------- 104 (297)
T 2ojh_A 89 DHGISPDGALYAISDK---------------------------------------------------------------- 104 (297)
T ss_dssp CCEECTTSSEEEEEEC----------------------------------------------------------------
T ss_pred ceEECCCCCEEEEEEe----------------------------------------------------------------
Confidence 122211 22222100
Q ss_pred cCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEE-EEEcCCCEEEE
Q 003308 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLV-TASVQGHNINI 348 (832)
Q Consensus 270 ~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLA-TaS~dGt~I~I 348 (832)
.......|.+||+.+++ ...+..+. .+.+++|+|||++|+ +++.++. ++|
T Consensus 105 --------------------------~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~-~~l 155 (297)
T 2ojh_A 105 --------------------------VEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQV-FDI 155 (297)
T ss_dssp --------------------------TTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTE-EEE
T ss_pred --------------------------CCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCc-eEE
Confidence 00112356666666665 34454443 589999999999887 7778876 899
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCC-ceeeccC
Q 003308 349 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG-SVNFQPT 421 (832)
Q Consensus 349 wdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS-~DgTVhIwdl~~~g~-~~~~~~H 421 (832)
|++.... .....+.. ....+.+++|+|||++|+.++ .+++++||++...++ ...+..|
T Consensus 156 ~~~~~~~-------------~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 215 (297)
T 2ojh_A 156 YSMDIDS-------------GVETRLTH--GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS 215 (297)
T ss_dssp EEEETTT-------------CCEEECCC--SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC
T ss_pred EEEECCC-------------CcceEccc--CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC
Confidence 9864320 01122221 123589999999999998877 499999999974433 3344443
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.37 E-value=4.2e-10 Score=120.14 Aligned_cols=105 Identities=8% Similarity=0.180 Sum_probs=69.9
Q ss_pred CCCeEEEEECCC--CcE--EEEeccCC------CCeEEEEEcCCCCEEEE-EEcCCCEEEEEeCCCCCCCCCCccCCCCc
Q 003308 299 NVGMVIVRDIVS--KNV--IAQFRAHK------SPISALCFDPSGILLVT-ASVQGHNINIFKIIPGILGTSSACDAGTS 367 (832)
Q Consensus 299 ~~G~V~IwDl~s--~~~--l~~~~aH~------~pIs~LaFSPdG~lLAT-aS~dGt~I~Iwdi~t~~~~~~s~~~~~~~ 367 (832)
.++.|.+||+.. ++. +..+.... ..+..++|+|||++|+. ...+++ |.+||+... +.
T Consensus 207 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~~~~-----------g~ 274 (347)
T 3hfq_A 207 LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAVTAD-----------GH 274 (347)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEECGG-----------GC
T ss_pred CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEECCC-----------Cc
Confidence 346788888764 432 33333332 34889999999998754 445655 999998642 01
Q ss_pred eeEEEEEeccCccccEEEEEEccCCCEEEEEeCC-CcEEEEecCCCCCcee
Q 003308 368 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGGSVN 417 (832)
Q Consensus 368 ~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~D-gTVhIwdl~~~g~~~~ 417 (832)
...+..+..+ ...+.+++|||||++|++++.+ ++|.||++....+...
T Consensus 275 ~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 275 LTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 2344444321 1237899999999999988865 8999998876555544
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.37 E-value=1e-11 Score=146.09 Aligned_cols=278 Identities=12% Similarity=0.065 Sum_probs=156.6
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEeeecCC---CEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCC
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDG---PVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG---~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg 94 (832)
.+++..+.++.+++||+.+ ++...++..+.. .|..+++.|+.. .||++......
T Consensus 28 g~~~~~~~dg~i~~~d~~~-g~~~~~~~~~~~~~~~v~~~~~SpDg~--------------~l~~~~~~~~~-------- 84 (723)
T 1xfd_A 28 TEFIYREQKGTVRLWNVET-NTSTVLIEGKKIESLRAIRYEISPDRE--------------YALFSYNVEPI-------- 84 (723)
T ss_dssp SCBCCCCSSSCEEEBCGGG-CCCEEEECTTTTTTTTCSEEEECTTSS--------------EEEEEESCCCC--------
T ss_pred CcEEEEeCCCCEEEEECCC-CcEEEEeccccccccccceEEECCCCC--------------EEEEEecCccc--------
Confidence 3455556666799999987 567777766554 488899988642 46656532100
Q ss_pred cccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCC----CCEEEEEEc--CCEEEEEeCCEEEEEECCCCceE
Q 003308 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFR----SPIYSVRCS--SRVVAICQAAQVHCFDAATLEIE 168 (832)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~----s~V~sV~~S--~r~LAVa~~~~I~vwDl~t~~~~ 168 (832)
. .....+.|.+||+.++++ ..|... ..|..++|| ++.||.+.+++|++||+.+++..
T Consensus 85 ----~------------~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~ 147 (723)
T 1xfd_A 85 ----Y------------QHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI 147 (723)
T ss_dssp ----S------------SSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE
T ss_pred ----e------------eecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceE
Confidence 0 011347899999999986 444331 237888897 47888888899999999998765
Q ss_pred EEEecCCCcc---CCCCCC---CCCcccceeeecc--ceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeee
Q 003308 169 YAILTNPIVM---GHPSAG---GIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYA 240 (832)
Q Consensus 169 ~tl~t~~~~~---~~p~~~---~~~~~~~p~Alg~--r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A 240 (832)
.....+.... +.++-- ..--....++++| ++|||+... +..+..+.
T Consensus 148 ~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~--------------------------~~~~~~~~ 201 (723)
T 1xfd_A 148 RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN--------------------------DSRVPIME 201 (723)
T ss_dssp EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE--------------------------CTTSCEEE
T ss_pred EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC--------------------------CCccceEE
Confidence 5443321100 000000 0000012355665 677776310 00000000
Q ss_pred cccccceeceeeeccCccccccccccccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccC
Q 003308 241 KESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH 320 (832)
Q Consensus 241 ~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH 320 (832)
.. ......+..+. .+ ..+ .+|. ......|++||+.+++....+..|
T Consensus 202 ~~----------~~~~~~~~~~~------------~~--~~~---~~G~-------~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 202 LP----------TYTGSIYPTVK------------PY--HYP---KAGS-------ENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp EC----------CCSSSSSCCCE------------EE--ECC---BTTS-------CCCEEEEEEEESSSSCCCEECCCC
T ss_pred ee----------ccCCcCCCcce------------ec--cCC---CCCC-------CCCeeEEEEEECCCCceeEEeeCC
Confidence 00 00000000000 00 000 0010 123458999999998876777765
Q ss_pred ------CCCeEEEEEcCCCCEEEEEEcCC---CEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccE----EEEE
Q 003308 321 ------KSPISALCFDPSGILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVI----QDIS 387 (832)
Q Consensus 321 ------~~pIs~LaFSPdG~lLATaS~dG---t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I----~~Ia 387 (832)
...|.+++|||||++|++.+.++ ..|.+||+.++ ....+.... ....+ ..++
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g------------~~~~~~~~~---~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG------------VCTKKHEDE---SEAWLHRQNEEPV 312 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC------------CEEEEEEEE---CSSCCCCCCCCCE
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC------------cceEEEEec---cCCEEeccCCCce
Confidence 56899999999999998776432 35899999876 122322221 11122 3789
Q ss_pred EccCCCEEEE--EeCCC----cEEEEecC
Q 003308 388 FSDDSNWIMI--SSSRG----TSHLFAIN 410 (832)
Q Consensus 388 FSpDg~~LAs--gS~Dg----TVhIwdl~ 410 (832)
|||||++|+. +..++ +.+||.+.
T Consensus 313 ~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp ECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 9999998875 44677 55665554
No 143
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.35 E-value=6.6e-10 Score=119.47 Aligned_cols=105 Identities=16% Similarity=0.224 Sum_probs=69.3
Q ss_pred CCCeEEEEECCCCc-------EE-----EEe-ccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCC
Q 003308 299 NVGMVIVRDIVSKN-------VI-----AQF-RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAG 365 (832)
Q Consensus 299 ~~G~V~IwDl~s~~-------~l-----~~~-~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~ 365 (832)
.++.|.+|++.... .. ..+ ..+......++|+|||++|++++.....|.+||+.++
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g----------- 243 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG----------- 243 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT-----------
T ss_pred CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC-----------
Confidence 45689999887533 11 122 2334457899999999998888853345999998764
Q ss_pred CceeEEEEEeccCc-cccEEEEEEccCCCEEEEEeCC--CcEEEEecCCCCCc
Q 003308 366 TSYVHLYRLQRGLT-NAVIQDISFSDDSNWIMISSSR--GTSHLFAINPLGGS 415 (832)
Q Consensus 366 ~~~~~l~~l~rG~t-~a~I~~IaFSpDg~~LAsgS~D--gTVhIwdl~~~g~~ 415 (832)
....+..+..... .....+++|||||++|+++..+ ++|.||++.+..+.
T Consensus 244 -~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~ 295 (361)
T 3scy_A 244 -MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT 295 (361)
T ss_dssp -EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred -ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence 1223333321111 1236799999999999777665 89999999754443
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.34 E-value=1.3e-10 Score=123.05 Aligned_cols=194 Identities=13% Similarity=0.091 Sum_probs=133.5
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEcC--CEEEEE--eCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccce
Q 003308 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCSS--RVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~--r~LAVa--~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p 192 (832)
++|.+||+.+++.+.++.....+..+.+++ +.+.++ .++.|++||+.+++.+.++....... +. ...|
T Consensus 69 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~------~~~~ 140 (353)
T 3vgz_A 69 GVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR--TE------EVRP 140 (353)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC--CS------SCCC
T ss_pred ccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc--cc------ccCC
Confidence 789999999999999998877788888864 655554 35799999999999887775432100 00 0000
Q ss_pred eeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCC
Q 003308 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (832)
Q Consensus 193 ~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~ 272 (832)
..++-++++. +|..+ +
T Consensus 141 --~~~~~~~~s~---------------------------dg~~l-----------~------------------------ 156 (353)
T 3vgz_A 141 --LQPRELVADD---------------------------ATNTV-----------Y------------------------ 156 (353)
T ss_dssp --CEEEEEEEET---------------------------TTTEE-----------E------------------------
T ss_pred --CCCceEEECC---------------------------CCCEE-----------E------------------------
Confidence 0112233331 11111 0
Q ss_pred CcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCC
Q 003308 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (832)
Q Consensus 273 ~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~ 352 (832)
+.....++.|.+||+.+++.+..+..+...+.+++|+|||++|++++.++. |.+||+.
T Consensus 157 ---------------------~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-i~~~d~~ 214 (353)
T 3vgz_A 157 ---------------------ISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGE-LITIDTA 214 (353)
T ss_dssp ---------------------EEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSE-EEEEETT
T ss_pred ---------------------EEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCe-EEEEECC
Confidence 001124678999999999999998867667889999999999999998876 8899998
Q ss_pred CCCCCCCCccCCCCceeEEEEEeccC--ccccEEEEEEccCCCEEEEEeCC-CcEEEEecCCCCCceee
Q 003308 353 PGILGTSSACDAGTSYVHLYRLQRGL--TNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGGSVNF 418 (832)
Q Consensus 353 t~~~~~~s~~~~~~~~~~l~~l~rG~--t~a~I~~IaFSpDg~~LAsgS~D-gTVhIwdl~~~g~~~~~ 418 (832)
++ ..+..+.-+. ....+.+++|+|||++|++++.+ ++|++||+.+......+
T Consensus 215 ~~--------------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 215 DN--------------KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp TT--------------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred CC--------------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 76 3333443211 12348899999999988777664 89999999775443333
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.33 E-value=5.9e-10 Score=117.53 Aligned_cols=180 Identities=9% Similarity=0.114 Sum_probs=118.5
Q ss_pred CEEEEEECCCCcEEEEEeCCC-CEEEEEEc--CCEEEE-Ee-CCEEEEEECCCCce-EEEEecCCCccCCCCCCCCCccc
Q 003308 117 TVVHFYSLRSQSYVHMLKFRS-PIYSVRCS--SRVVAI-CQ-AAQVHCFDAATLEI-EYAILTNPIVMGHPSAGGIGIGY 190 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s-~V~sV~~S--~r~LAV-a~-~~~I~vwDl~t~~~-~~tl~t~~~~~~~p~~~~~~~~~ 190 (832)
++|++||+.+++.+..+.+.. .+ .++++ ++.|.+ .. +++|++||+.+++. ...+.....
T Consensus 20 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-------------- 84 (331)
T 3u4y_A 20 RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS-------------- 84 (331)
T ss_dssp TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS--------------
T ss_pred CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCC--------------
Confidence 789999999999999988744 45 89997 455555 43 67999999999886 555543211
Q ss_pred ceeeeccce-EEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccc
Q 003308 191 GPLAVGPRW-LAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (832)
Q Consensus 191 ~p~Alg~r~-LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~ 269 (832)
+.. ++++. +|..+ +. .
T Consensus 85 ------~~~~~~~s~---------------------------dg~~l-----------~~-----~-------------- 101 (331)
T 3u4y_A 85 ------SMADVDITP---------------------------DDQFA-----------VT-----V-------------- 101 (331)
T ss_dssp ------CCCCEEECT---------------------------TSSEE-----------EE-----C--------------
T ss_pred ------CccceEECC---------------------------CCCEE-----------EE-----e--------------
Confidence 112 33321 12111 00 0
Q ss_pred cCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcC-CCEEEE
Q 003308 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GHNINI 348 (832)
Q Consensus 270 ~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~d-Gt~I~I 348 (832)
...+..+.|.+||+.+++.+..+..+.. ..+++|+|||++|++++.+ +..|.+
T Consensus 102 -------------------------~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~ 155 (331)
T 3u4y_A 102 -------------------------TGLNHPFNMQSYSFLKNKFISTIPIPYD-AVGIAISPNGNGLILIDRSSANTVRR 155 (331)
T ss_dssp -------------------------CCSSSSCEEEEEETTTTEEEEEEECCTT-EEEEEECTTSSCEEEEEETTTTEEEE
T ss_pred -------------------------cCCCCcccEEEEECCCCCeEEEEECCCC-ccceEECCCCCEEEEEecCCCceEEE
Confidence 0001223899999999999888876544 5899999999866666554 443899
Q ss_pred EeCCCCCCCCCCccCCCCceeE--EEEEeccCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCC
Q 003308 349 FKIIPGILGTSSACDAGTSYVH--LYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 414 (832)
Q Consensus 349 wdi~t~~~~~~s~~~~~~~~~~--l~~l~rG~t~a~I~~IaFSpDg~~LAsgS-~DgTVhIwdl~~~g~ 414 (832)
|++... + .... ...+.. ...+..++|+|||++|++++ .+++|++||+.+...
T Consensus 156 ~~~~~~--g---------~~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 156 FKIDAD--G---------VLFDTGQEFISG---GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEECTT--C---------CEEEEEEEEECS---SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred EEECCC--C---------cEeecCCccccC---CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 998753 0 0111 112211 22378999999999766555 689999999987654
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.33 E-value=8.3e-10 Score=118.72 Aligned_cols=107 Identities=12% Similarity=0.203 Sum_probs=74.5
Q ss_pred CCCeEEEEECCCCcE--EEEec---cCCCCeEEEEEcCCCCEEEEEEcC-CCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003308 299 NVGMVIVRDIVSKNV--IAQFR---AHKSPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~--l~~~~---aH~~pIs~LaFSPdG~lLATaS~d-Gt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~ 372 (832)
.++.|.+||+.+++. +..+. .+.....+++|||||++|+++..+ ...|.||++... .+....+.
T Consensus 231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~----------~g~~~~~~ 300 (361)
T 3scy_A 231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET----------NGTLTKVG 300 (361)
T ss_dssp TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT----------TCCEEEEE
T ss_pred CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC----------CCcEEEee
Confidence 456899999987654 33333 344557899999999999777665 345999999632 01223344
Q ss_pred EEeccCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCCceee
Q 003308 373 RLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 373 ~l~rG~t~a~I~~IaFSpDg~~LAsgS-~DgTVhIwdl~~~g~~~~~ 418 (832)
.+..| ..+.+++|||||++|++++ .+++|.||++....+....
T Consensus 301 ~~~~g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 301 YQLTG---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp EEECS---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EecCC---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 44322 3477899999999999888 6799999988765555544
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.32 E-value=1e-09 Score=117.07 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=68.2
Q ss_pred CCCeEEEEECC-CCcE--EEEeccCC-CCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003308 299 NVGMVIVRDIV-SKNV--IAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (832)
Q Consensus 299 ~~G~V~IwDl~-s~~~--l~~~~aH~-~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l 374 (832)
.++.|.+||+. +++. +..+..+. .....++|+|||++|+.++..+..|.+|++... .+....+..+
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~----------~g~~~~~~~~ 229 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ----------TGAFTQLGIV 229 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT----------TTEEEEEEEE
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC----------CCceEEeeee
Confidence 45689999998 4543 22333333 357789999999977776655556999998752 0012222233
Q ss_pred eccCc----cccEEEEEEccCCCEEE-EEeCCCcEEEEecCCC
Q 003308 375 QRGLT----NAVIQDISFSDDSNWIM-ISSSRGTSHLFAINPL 412 (832)
Q Consensus 375 ~rG~t----~a~I~~IaFSpDg~~LA-sgS~DgTVhIwdl~~~ 412 (832)
..... ...+..++|||||++|+ +...+++|.||++...
T Consensus 230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 21110 02388999999999884 5566899999999754
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.31 E-value=2e-10 Score=129.43 Aligned_cols=107 Identities=9% Similarity=0.123 Sum_probs=80.1
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003308 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (832)
Q Consensus 294 ~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~ 373 (832)
++++..||+|+|||+.++..+..+.+|...|.+++|+|+|++||+|+.||+ |+|||++ + .......
T Consensus 165 las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~-~------------~~~~~~~ 230 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT-L------------QEKKVIP 230 (434)
T ss_dssp EEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT-C------------CEEEEEC
T ss_pred EEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC-C------------ccccccc
Confidence 344567899999999999877777889999999999999999999999998 8999987 3 0111111
Q ss_pred EeccC---ccccEEEEEEccCCCEEEEE-eCCCc------EEEEecCCCCC
Q 003308 374 LQRGL---TNAVIQDISFSDDSNWIMIS-SSRGT------SHLFAINPLGG 414 (832)
Q Consensus 374 l~rG~---t~a~I~~IaFSpDg~~LAsg-S~DgT------VhIwdl~~~g~ 414 (832)
.+... +...|.+++|++++.++++. +.||. +++|++...+.
T Consensus 231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~ 281 (434)
T 2oit_A 231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEE 281 (434)
T ss_dssp CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTT
T ss_pred CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCC
Confidence 11111 12259999999999988654 34543 89999987543
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.28 E-value=2e-10 Score=135.75 Aligned_cols=99 Identities=14% Similarity=0.215 Sum_probs=73.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCC----CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKS----PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~----pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l 374 (832)
.++.|.+||+.++++...+..|.. .+.+++|+|||++|++++.+|+ ++||.+... .. +..+
T Consensus 310 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~~~~-------------~~-~~~l 374 (741)
T 2ecf_A 310 KKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGF-QHLYRIDSK-------------GK-AAAL 374 (741)
T ss_dssp SEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSS-CEEEEECSS-------------SC-EEES
T ss_pred CeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCc-cEEEEEcCC-------------CC-eeee
Confidence 356899999999988887776654 4568999999999999999987 788987632 02 3344
Q ss_pred eccCccccEEEE-EEccCCCEEEEEeC-CC--cEEEEecCCCCC
Q 003308 375 QRGLTNAVIQDI-SFSDDSNWIMISSS-RG--TSHLFAINPLGG 414 (832)
Q Consensus 375 ~rG~t~a~I~~I-aFSpDg~~LAsgS~-Dg--TVhIwdl~~~g~ 414 (832)
..+ ...|.++ +|||||++|+..+. ++ +++||++...+.
T Consensus 375 ~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 375 THG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp CCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 332 2347777 59999998865554 44 899999976444
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.28 E-value=5.5e-10 Score=116.89 Aligned_cols=56 Identities=9% Similarity=-0.021 Sum_probs=46.1
Q ss_pred CEEEEEECCCCcEEEEEeCCC---CEEEEEEcC--CEEEEE--eCCEEEEEECCCCceEEEEe
Q 003308 117 TVVHFYSLRSQSYVHMLKFRS---PIYSVRCSS--RVVAIC--QAAQVHCFDAATLEIEYAIL 172 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s---~V~sV~~S~--r~LAVa--~~~~I~vwDl~t~~~~~tl~ 172 (832)
++|++||+.+++.+.++.+.. .+..+++++ +.++++ .+++|++||+.+++.+.++.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 789999999999999999876 688999973 555554 35699999999998877765
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.26 E-value=7.2e-11 Score=136.16 Aligned_cols=91 Identities=11% Similarity=0.111 Sum_probs=71.7
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCc
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dG-t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t 379 (832)
+.|.+||+.+++.. .+..|...+..++|||||++||+++.+| ..|.+||+.++ ... .+ .++.
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~--------------~~~-~~-~~~~ 237 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG--------------SVE-DL-ELPS 237 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC--------------CEE-EC-CCSC
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC--------------cEE-Ec-cCCC
Confidence 46999999988764 7788988999999999999999888887 14889998875 222 22 2322
Q ss_pred cccEEEEE--------EccCCCEEEEEeCCCcEEEEec
Q 003308 380 NAVIQDIS--------FSDDSNWIMISSSRGTSHLFAI 409 (832)
Q Consensus 380 ~a~I~~Ia--------FSpDg~~LAsgS~DgTVhIwdl 409 (832)
..+..++ |||||+++++++.|++++||++
T Consensus 238 -~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 238 -KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp -SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred -cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 2344455 9999999999999999999999
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.25 E-value=7.6e-11 Score=138.69 Aligned_cols=52 Identities=4% Similarity=-0.014 Sum_probs=42.2
Q ss_pred CCEEEEEECCCCcEEEEEeCCC----CEEEEEEc--CCEEEEEeC----------CEEEEEECCCCce
Q 003308 116 PTVVHFYSLRSQSYVHMLKFRS----PIYSVRCS--SRVVAICQA----------AQVHCFDAATLEI 167 (832)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~f~s----~V~sV~~S--~r~LAVa~~----------~~I~vwDl~t~~~ 167 (832)
+++|++||+.++++...+.... .|.+++|| ++.||.+.+ ..|++||+.+++.
T Consensus 36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 103 (723)
T 1xfd_A 36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP 103 (723)
T ss_dssp SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce
Confidence 4789999999999888887644 38999998 477777653 7899999998875
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.23 E-value=2.9e-10 Score=141.11 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=79.4
Q ss_pred CCeEE-EEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 300 VGMVI-VRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 300 ~G~V~-IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
++.+. +||+.++++. .+..|...+.+++|||||++||+++.+++ |++||+.++ ....+ + .++
T Consensus 357 ~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg------------~~~~~--~-~~~ 419 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETG------------KPTVI--E-RSR 419 (1045)
T ss_dssp TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTC------------CEEEE--E-ECS
T ss_pred CCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCC------------ceEEe--c-cCC
Confidence 34677 8899887654 45588889999999999999999999986 899999876 12222 2 233
Q ss_pred ccccEEEEEEccCCCEEEEEeCCC----------cEEEEecCCCCCceeeccCC
Q 003308 379 TNAVIQDISFSDDSNWIMISSSRG----------TSHLFAINPLGGSVNFQPTD 422 (832)
Q Consensus 379 t~a~I~~IaFSpDg~~LAsgS~Dg----------TVhIwdl~~~g~~~~~~~H~ 422 (832)
...|.+++|||||++||+++.++ +|+|||+.... ...+..|.
T Consensus 420 -~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 420 -EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp -SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred -CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence 23488999999999999988755 99999998643 55555553
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.22 E-value=2.3e-11 Score=137.07 Aligned_cols=108 Identities=8% Similarity=0.166 Sum_probs=85.5
Q ss_pred ccCCCCeEEEEECCCC--------c---EEEEeccCCCCeEEEEEcCC-CCEEEEEEcCCCEEEEEeCCCCCCCCCCccC
Q 003308 296 DADNVGMVIVRDIVSK--------N---VIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACD 363 (832)
Q Consensus 296 s~~~~G~V~IwDl~s~--------~---~l~~~~aH~~pIs~LaFSPd-G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~ 363 (832)
++..+|.|+|||+.+. + .+..+.+|..+|.+|+|+|+ +.+||+++.||+ |+|||+.++
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~~--------- 182 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTET--------- 182 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESSS---------
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCCC---------
Confidence 5678999999998754 2 24566789999999999998 899999999998 899999875
Q ss_pred CCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeeccC
Q 003308 364 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (832)
Q Consensus 364 ~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~~H 421 (832)
..+... .++ ...|.+++|||||++||+++.||+|+|||+. ......+..|
T Consensus 183 -----~~~~~~-~~~-~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~ 232 (434)
T 2oit_A 183 -----VKVCAT-LPS-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP 232 (434)
T ss_dssp -----EEEEEE-ECG-GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCC
T ss_pred -----cceeec-cCC-CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCC
Confidence 233333 233 3469999999999999999999999999997 3333444443
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.22 E-value=2.4e-09 Score=125.81 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=67.2
Q ss_pred CCCeEEEEECC-CCcEEEEeccCCCCeEE-EEEcCCCCEEEEEEcCCC----EEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003308 299 NVGMVIVRDIV-SKNVIAQFRAHKSPISA-LCFDPSGILLVTASVQGH----NINIFKIIPGILGTSSACDAGTSYVHLY 372 (832)
Q Consensus 299 ~~G~V~IwDl~-s~~~l~~~~aH~~pIs~-LaFSPdG~lLATaS~dGt----~I~Iwdi~t~~~~~~s~~~~~~~~~~l~ 372 (832)
.+|.++||++. +++.+..+..|...+.. ++|+|||+.|+.++.+.. .|..||+.++ . +.
T Consensus 331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~------------~---~~ 395 (706)
T 2z3z_A 331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG------------K---TK 395 (706)
T ss_dssp TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC------------C---CE
T ss_pred cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC------------C---ce
Confidence 34667787765 56777888888888877 899999998876655432 4555666544 1 11
Q ss_pred EEeccCccccEEEEEEccCCCEEEEEeCC----CcEEEEecCCC
Q 003308 373 RLQRGLTNAVIQDISFSDDSNWIMISSSR----GTSHLFAINPL 412 (832)
Q Consensus 373 ~l~rG~t~a~I~~IaFSpDg~~LAsgS~D----gTVhIwdl~~~ 412 (832)
.+. ....+.+++|||||++|+.++.+ +++++||+...
T Consensus 396 ~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 396 DLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp ESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred ecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 221 12348899999999999877554 46999999764
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.20 E-value=2.8e-09 Score=115.85 Aligned_cols=104 Identities=15% Similarity=0.198 Sum_probs=68.7
Q ss_pred CCeEEEEECC-CCcE--EEEec--cCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCcee----E
Q 003308 300 VGMVIVRDIV-SKNV--IAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV----H 370 (832)
Q Consensus 300 ~G~V~IwDl~-s~~~--l~~~~--aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~----~ 370 (832)
++.|++||+. +++. +..+. .|...+..++|+|||++|++++..+..|.+|++... .+ ... .
T Consensus 166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g---------~~~~~~~~ 235 (365)
T 1jof_A 166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-TH---------MPVYTHHS 235 (365)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-TC---------CEEEEEEE
T ss_pred CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-CC---------cEEEccce
Confidence 3579999998 6654 33444 345678999999999999988875455999987532 00 111 1
Q ss_pred EEEEeccCcc-c-------cEEEEE-EccCCCEEEEEeCCC------cEEEEecCCCC
Q 003308 371 LYRLQRGLTN-A-------VIQDIS-FSDDSNWIMISSSRG------TSHLFAINPLG 413 (832)
Q Consensus 371 l~~l~rG~t~-a-------~I~~Ia-FSpDg~~LAsgS~Dg------TVhIwdl~~~g 413 (832)
+..+..+... . .+.+++ |||||++|++++.+. +|.||++...+
T Consensus 236 ~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g 293 (365)
T 1jof_A 236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG 293 (365)
T ss_dssp EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred EEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC
Confidence 1112111111 1 378999 999999998776532 89999997533
No 157
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.18 E-value=4.7e-10 Score=139.25 Aligned_cols=95 Identities=11% Similarity=0.059 Sum_probs=78.3
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCC---------CEEEEEeCCCCCCCCCCccCCCCcee
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG---------HNINIFKIIPGILGTSSACDAGTSYV 369 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dG---------t~I~Iwdi~t~~~~~~s~~~~~~~~~ 369 (832)
.++.|++||+.+++....+..|...|.+++|||||++||+++.++ ..|++||+.++ .
T Consensus 398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--------------~ 463 (1045)
T 1k32_A 398 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--------------K 463 (1045)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--------------E
T ss_pred CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC--------------c
Confidence 456899999999998888889999999999999999999988754 35999999875 2
Q ss_pred EEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003308 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (832)
Q Consensus 370 ~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~ 410 (832)
+..+. ++ ...+.+++|||||++|+.++.++...+|+..
T Consensus 464 -~~~l~-~~-~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 464 -IFAAT-TE-NSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp -EEECS-CS-SSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred -EEEee-CC-CcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 33442 22 2347889999999999999999999999875
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.17 E-value=1.3e-10 Score=137.16 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=77.8
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEeeecCC---CEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccCC
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDG---PVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG---~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~Dg 94 (832)
.+++..+.++.+++||++. ++...++..+.. .|..+++.|+.. .||++.....
T Consensus 27 g~~~~~~~d~~i~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~SpDg~--------------~la~~~~~~~--------- 82 (719)
T 1z68_A 27 QEYLHQSADNNIVLYNIET-GQSYTILSNRTMKSVNASNYGLSPDRQ--------------FVYLESDYSK--------- 82 (719)
T ss_dssp SEEEEECTTSCEEEEESSS-CCEEEEECHHHHHTTTCSEEEECTTSS--------------EEEEEEEEEE---------
T ss_pred CeEEEEcCCCCEEEEEcCC-CcEEEEEccccccccceeeEEECCCCC--------------eEEEEecCce---------
Confidence 4667777777899999986 567777765433 488888888642 4665553100
Q ss_pred cccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCceE
Q 003308 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIE 168 (832)
Q Consensus 95 ~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~r~LAVa~~~~I~vwDl~t~~~~ 168 (832)
..+ ...+++|++||+.+++.+....+...+..++|| ++.||.+.+++|++||+.+++..
T Consensus 83 ---~~~------------~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~ 143 (719)
T 1z68_A 83 ---LWR------------YSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF 143 (719)
T ss_dssp ---CSS------------SCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred ---eEE------------eecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcE
Confidence 000 001378999999999874323445678899998 47888888999999999988764
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.16 E-value=5.9e-10 Score=128.55 Aligned_cols=98 Identities=8% Similarity=-0.055 Sum_probs=71.6
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcC----CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 303 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ----GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 303 V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~d----Gt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
+.|||+.++++......+. .+++|||||++||+++.+ +. |.+||+.++ ..+ .+. ++
T Consensus 134 ~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~-i~~~d~~~g------------~~~---~l~-~~ 193 (582)
T 3o4h_A 134 VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVS-LFTSNLSSG------------GLR---VFD-SG 193 (582)
T ss_dssp EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEE-EEEEETTTC------------CCE---EEC-CS
T ss_pred ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeE-EEEEcCCCC------------Cce---Eee-cC
Confidence 4499999887655444333 789999999999988776 44 899998776 112 332 22
Q ss_pred ccccEEEEEEccCCCEEEEEeCCC--cEEEEecCCCCCceeeccCC
Q 003308 379 TNAVIQDISFSDDSNWIMISSSRG--TSHLFAINPLGGSVNFQPTD 422 (832)
Q Consensus 379 t~a~I~~IaFSpDg~~LAsgS~Dg--TVhIwdl~~~g~~~~~~~H~ 422 (832)
...+..++|||||++||++..++ +|++||+...... .+..|.
T Consensus 194 -~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~ 237 (582)
T 3o4h_A 194 -EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS 237 (582)
T ss_dssp -SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred -CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence 23489999999999999888899 8999999765433 445553
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.15 E-value=3.6e-09 Score=111.40 Aligned_cols=57 Identities=9% Similarity=0.034 Sum_probs=46.6
Q ss_pred CEEEEEECCCCcEEEEEeCCC--CEEEEEEc--CCEEEEE--eCCEEEEEECCCCceEEEEec
Q 003308 117 TVVHFYSLRSQSYVHMLKFRS--PIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILT 173 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s--~V~sV~~S--~r~LAVa--~~~~I~vwDl~t~~~~~tl~t 173 (832)
++|++||+.+++.++++.... .+..++++ ++.+.++ .+++|++||+.+++.+..+..
T Consensus 21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 789999999999999998866 78889997 4555554 467999999999988777653
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.13 E-value=7.3e-09 Score=112.55 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=54.0
Q ss_pred CeEEEE-EcCCCCEEEEEEcCCC-----EEEEEeCC-CCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEcc---CC
Q 003308 323 PISALC-FDPSGILLVTASVQGH-----NINIFKII-PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD---DS 392 (832)
Q Consensus 323 pIs~La-FSPdG~lLATaS~dGt-----~I~Iwdi~-t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSp---Dg 392 (832)
.+..++ |||||++|++++.+.. .|.||++. ++ ....+..+.... ...+..++||| ||
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g------------~~~~~~~~~~~~-~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG------------SIEKQLFLSPTP-TSGGHSNAVSPCPWSD 321 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS------------CEEEEEEEEECS-SCCTTCCCEEECTTCT
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC------------CEEEeeeeeecC-CCCcccceecCCCcCC
Confidence 478999 9999999887765443 59999986 33 112221111111 12356789999 89
Q ss_pred CEEEEEeCC-CcEEEEecCCC
Q 003308 393 NWIMISSSR-GTSHLFAINPL 412 (832)
Q Consensus 393 ~~LAsgS~D-gTVhIwdl~~~ 412 (832)
++|++++.+ ++|.||++...
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 999999875 89999999764
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.00 E-value=1.3e-09 Score=128.66 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=41.1
Q ss_pred CEEEEEECCCCcEEEEEeCCC----CEEEEEEc--CCEEEEEe----------CCEEEEEECCCCce
Q 003308 117 TVVHFYSLRSQSYVHMLKFRS----PIYSVRCS--SRVVAICQ----------AAQVHCFDAATLEI 167 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s----~V~sV~~S--~r~LAVa~----------~~~I~vwDl~t~~~ 167 (832)
++|++||+.++++...+.... .|.++++| ++.||.+. +++|++||+.+++.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 679999999999887776543 38899997 47787754 37999999998875
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.97 E-value=6.5e-09 Score=124.15 Aligned_cols=111 Identities=12% Similarity=0.083 Sum_probs=74.0
Q ss_pred CcEEEEEecCCeEEEEeccCCCeeEEeeecCCC---EEE--EEEecCCCcccccCCcccccCCEEEEEeCCCCccCcccc
Q 003308 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGP---VSF--MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (832)
Q Consensus 18 ~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~dG~---Vr~--v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~ 92 (832)
.++|..+ ++.+.+||+.+ ++...++..+... +.+ +.+.|+. ..|++......
T Consensus 28 g~~~~~~-~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Spdg--------------~~l~~~~~~~~------- 84 (740)
T 4a5s_A 28 HEYLYKQ-ENNILVFNAEY-GNSSVFLENSTFDEFGHSINDYSISPDG--------------QFILLEYNYVK------- 84 (740)
T ss_dssp SEEEEEE-TTEEEEEETTT-CCEEEEECTTTTTTCCSCCCEEEECTTS--------------SEEEEEEEEEE-------
T ss_pred CcEEEEc-CCcEEEEECCC-CceEEEEechhhhhhcccccceEECCCC--------------CEEEEEECCee-------
Confidence 4677777 77899999987 5667777765432 222 5566643 13555543110
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcC--CEEEEEeCCEEEEEECCCCceE
Q 003308 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSS--RVVAICQAAQVHCFDAATLEIE 168 (832)
Q Consensus 93 Dg~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S~--r~LAVa~~~~I~vwDl~t~~~~ 168 (832)
..+ ....+.+.+||+.++++......+..+..++||+ +.||.+.++.|++||+.+++..
T Consensus 85 -----~~r------------~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 85 -----QWR------------HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY 145 (740)
T ss_dssp -----CSS------------SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred -----eEE------------EccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE
Confidence 000 0112678999999998755334467899999984 7888888999999999988743
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.95 E-value=2.4e-07 Score=101.43 Aligned_cols=104 Identities=10% Similarity=0.092 Sum_probs=69.7
Q ss_pred CCCeEEEEECCCCc--EEEEecc------CC----CCeEEEEEcCCCCEEEEEEc-C---------CCEEEEEeCCCCCC
Q 003308 299 NVGMVIVRDIVSKN--VIAQFRA------HK----SPISALCFDPSGILLVTASV-Q---------GHNINIFKIIPGIL 356 (832)
Q Consensus 299 ~~G~V~IwDl~s~~--~l~~~~a------H~----~pIs~LaFSPdG~lLATaS~-d---------Gt~I~Iwdi~t~~~ 356 (832)
.+|.|.++|+...+ .+..+.. +. .....++|+|||..|..+.. + ...|.+||+.+.
T Consensus 219 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-- 296 (361)
T 2oiz_A 219 YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-- 296 (361)
T ss_dssp TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--
T ss_pred CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--
Confidence 46789999997653 2233221 11 11113789999887776643 2 235899999886
Q ss_pred CCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC--CCceeeccC
Q 003308 357 GTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL--GGSVNFQPT 421 (832)
Q Consensus 357 ~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~--g~~~~~~~H 421 (832)
+.+.++.-+. +.+|+|||||++|++++. ++|.|||..+. .....+..+
T Consensus 297 ------------~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~ 346 (361)
T 2oiz_A 297 ------------QRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA 346 (361)
T ss_dssp ------------EEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS
T ss_pred ------------cEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC
Confidence 5555664332 789999999999998886 99999999875 433344333
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.86 E-value=4.1e-08 Score=117.27 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=38.2
Q ss_pred CEEEEEECCCCcEEEEEeCCC------CEEEEEEc--CCEEEEEeC----------CEEEEEECCCCceE
Q 003308 117 TVVHFYSLRSQSYVHMLKFRS------PIYSVRCS--SRVVAICQA----------AQVHCFDAATLEIE 168 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s------~V~sV~~S--~r~LAVa~~----------~~I~vwDl~t~~~~ 168 (832)
++|++||+.++++...+.... ...++.+| ++.|+.+.+ +.+++||+.+++..
T Consensus 36 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~ 105 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI 105 (740)
T ss_dssp TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE
Confidence 689999999999887776532 22346676 577777554 57789999998743
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.85 E-value=1.8e-07 Score=100.68 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=58.4
Q ss_pred CeEEEEECCCCcE--EEEeccCCCC---eEEEEEcCCCCEEEEEEc--------CCCEEEEEeCCCCCCCCCCccCCCCc
Q 003308 301 GMVIVRDIVSKNV--IAQFRAHKSP---ISALCFDPSGILLVTASV--------QGHNINIFKIIPGILGTSSACDAGTS 367 (832)
Q Consensus 301 G~V~IwDl~s~~~--l~~~~aH~~p---Is~LaFSPdG~lLATaS~--------dGt~I~Iwdi~t~~~~~~s~~~~~~~ 367 (832)
+.|.+||+.+++. +..+..+... ...++|+|||+.|+.... ....|.+||+.++
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~------------- 330 (388)
T 3pe7_A 264 RFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG------------- 330 (388)
T ss_dssp EEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT-------------
T ss_pred ceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC-------------
Confidence 3599999998863 4444442111 112379999998886532 2235899998875
Q ss_pred eeEEEEEeccCc---------cccEEEEEEccCCCEEEEEeC-CCcEEEEecCC
Q 003308 368 YVHLYRLQRGLT---------NAVIQDISFSDDSNWIMISSS-RGTSHLFAINP 411 (832)
Q Consensus 368 ~~~l~~l~rG~t---------~a~I~~IaFSpDg~~LAsgS~-DgTVhIwdl~~ 411 (832)
.+..+..... ...+.+++|||||++|+.++. +|..+||.+.-
T Consensus 331 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 331 --TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp --EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred --ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 1222322211 003678899999999987775 78888887754
No 167
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.83 E-value=2.6e-06 Score=91.58 Aligned_cols=101 Identities=10% Similarity=-0.026 Sum_probs=68.8
Q ss_pred CCeEEEEECCCCcEEEEeccCC-CCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 300 VGMVIVRDIVSKNVIAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 300 ~G~V~IwDl~s~~~l~~~~aH~-~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
.+.|.++|..+++++..+.... .....|+|+|||++|..+.. . |.+||..++.... .. .+..+
T Consensus 202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~----------~~--~~~~~- 265 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPV----------RP--FLEFR- 265 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCS----------SC--SBCCC-
T ss_pred CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceee----------ee--eecCC-
Confidence 4789999999999887776432 35789999999999888764 4 7899987751100 00 00000
Q ss_pred ccccEEEEEEcc-CCCEEEEE----eCCCcEEEEecCCCCCceee
Q 003308 379 TNAVIQDISFSD-DSNWIMIS----SSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 379 t~a~I~~IaFSp-Dg~~LAsg----S~DgTVhIwdl~~~g~~~~~ 418 (832)
......|+++| +++..++. ..+++|.+|+.. +.....+
T Consensus 266 -~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 266 -DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp -SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred -CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 13478999999 55555555 578999999987 4333344
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.76 E-value=2.7e-07 Score=107.58 Aligned_cols=104 Identities=14% Similarity=0.196 Sum_probs=69.6
Q ss_pred CeEEEEECC-CC---cEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCC--CCCCCCCCccCCCCceeEEEEE
Q 003308 301 GMVIVRDIV-SK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII--PGILGTSSACDAGTSYVHLYRL 374 (832)
Q Consensus 301 G~V~IwDl~-s~---~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~--t~~~~~~s~~~~~~~~~~l~~l 374 (832)
..|.+||+. ++ +.......|...+..++|+|||+++++++.+|+ ++||.+. ++ ... .+
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~-~~l~~~~~~~~------------~~~---~l 280 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW-WNLHRVDPATG------------AAT---QL 280 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS-CEEEEECTTTC------------CEE---ES
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC-eEEEEEECCCC------------cee---ec
Confidence 469999998 56 444444566788999999999998888888875 4555443 33 111 12
Q ss_pred eccCccc-------cEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC-ceeeccC
Q 003308 375 QRGLTNA-------VIQDISFSDDSNWIMISSSRGTSHLFAINPLGG-SVNFQPT 421 (832)
Q Consensus 375 ~rG~t~a-------~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~-~~~~~~H 421 (832)
..+.... .+.+++|+||++++++++. ++++||.+...++ ...+..|
T Consensus 281 ~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~ 334 (662)
T 3azo_A 281 CRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGP 334 (662)
T ss_dssp SCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSS
T ss_pred ccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCC
Confidence 1111110 1567999999999999999 9999997764433 3344433
No 169
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.75 E-value=5.8e-07 Score=96.71 Aligned_cols=100 Identities=6% Similarity=-0.016 Sum_probs=67.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEEcCC-----CEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003308 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQG-----HNINIFKIIPGILGTSSACDAGTSYVHL 371 (832)
Q Consensus 298 ~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSP-dG~lLATaS~dG-----t~I~Iwdi~t~~~~~~s~~~~~~~~~~l 371 (832)
...+.|.+||+.+++.. .+..+...+..++||| ||++||.++.++ ..|.++|+..+ .+
T Consensus 165 ~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~---------------~~ 228 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT---------------NM 228 (388)
T ss_dssp CCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC---------------CC
T ss_pred CCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC---------------ce
Confidence 34568999999998754 4445667899999999 999999887643 13666666543 11
Q ss_pred EEEeccCccccEEEEEEccCCCEEEEEeCC-C----cEEEEecCCCC
Q 003308 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSR-G----TSHLFAINPLG 413 (832)
Q Consensus 372 ~~l~rG~t~a~I~~IaFSpDg~~LAsgS~D-g----TVhIwdl~~~g 413 (832)
..+..+.....+..++|||||++||..+.+ + +|++||+.+..
T Consensus 229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 229 RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE 275 (388)
T ss_dssp EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence 122222211247789999999988776542 2 39999997643
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.74 E-value=4.9e-06 Score=86.10 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=70.6
Q ss_pred cCCCCeEEEEECCCCcEEEEeccC--CCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003308 297 ADNVGMVIVRDIVSKNVIAQFRAH--KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (832)
Q Consensus 297 ~~~~G~V~IwDl~s~~~l~~~~aH--~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l 374 (832)
...++.|++||.. ++.+..+..+ ...+..|+|+|+|+++++...++..|.+||.. + ..+..+
T Consensus 181 ~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g--------------~~~~~~ 244 (286)
T 1q7f_A 181 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G--------------QLISAL 244 (286)
T ss_dssp EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S--------------CEEEEE
T ss_pred ECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C--------------CEEEEE
Confidence 3456789999974 5566777544 35789999999999998887775248999853 2 233333
Q ss_pred eccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 375 ~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
..+.....+.+|+|+|||+++++ +.|++|+||++..
T Consensus 245 ~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 245 ESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred cccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 32222234789999999987776 6799999999865
No 171
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.71 E-value=2.2e-06 Score=92.14 Aligned_cols=178 Identities=7% Similarity=0.003 Sum_probs=117.5
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEE-eCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCccccee
Q 003308 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 193 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~r~LAVa-~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p~ 193 (832)
++|.+||++|++.+.++........|+++ .++.++. .++.|.+||+.+++...++...... + ..
T Consensus 64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~-~------------~~ 130 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD-M------------ES 130 (328)
T ss_dssp TEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-T------------TT
T ss_pred CEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-c------------cC
Confidence 68999999999999999766778889984 4444444 5889999999999877766432100 0 00
Q ss_pred eeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCCC
Q 003308 194 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 273 (832)
Q Consensus 194 Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~ 273 (832)
-.|.-||+.. + .|
T Consensus 131 -~~p~~i~~~~----------------------------~------------~l-------------------------- 143 (328)
T 3dsm_A 131 -GSTEQMVQYG----------------------------K------------YV-------------------------- 143 (328)
T ss_dssp -CBCCCEEEET----------------------------T------------EE--------------------------
T ss_pred -CCcceEEEEC----------------------------C------------EE--------------------------
Confidence 0001111110 0 00
Q ss_pred cCccccccCCCCCCCccccccccc-CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcC---------C
Q 003308 274 QNSLQSAIPGGKSNGTVNGHFPDA-DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ---------G 343 (832)
Q Consensus 274 ~~si~sa~~~~~~~g~~~g~~~s~-~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~d---------G 343 (832)
++.. ..++.|.++|+.+++.+..+..... ...++|+|+|++++++..+ .
T Consensus 144 --------------------yv~~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~ 202 (328)
T 3dsm_A 144 --------------------YVNCWSYQNRILKIDTETDKVVDELTIGIQ-PTSLVMDKYNKMWTITDGGYEGSPYGYEA 202 (328)
T ss_dssp --------------------EEEECTTCCEEEEEETTTTEEEEEEECSSC-BCCCEECTTSEEEEEBCCBCTTCSSCBCC
T ss_pred --------------------EEEcCCCCCEEEEEECCCCeEEEEEEcCCC-ccceEEcCCCCEEEEECCCccCCccccCC
Confidence 0001 1356899999999999888875443 4679999999988887654 1
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003308 344 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 344 t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
..|.+||..++ ..+..+.-.. ......++|+||+++|.++.. +|.+||+.+.
T Consensus 203 ~~v~~id~~t~--------------~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~ 254 (328)
T 3dsm_A 203 PSLYRIDAETF--------------TVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEAD 254 (328)
T ss_dssp CEEEEEETTTT--------------EEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCS
T ss_pred ceEEEEECCCC--------------eEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCC
Confidence 24889998775 2222332211 124789999999999988765 8888888653
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.71 E-value=2.8e-07 Score=98.95 Aligned_cols=102 Identities=11% Similarity=0.129 Sum_probs=62.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEEc---------------CCCEEEEEeCCCCCCCCCCccCC
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASV---------------QGHNINIFKIIPGILGTSSACDA 364 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSP-dG~lLATaS~---------------dGt~I~Iwdi~t~~~~~~s~~~~ 364 (832)
+.|.+||+.+++........ .+. ++|+| ||++|++++. ....|.+||+.++
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~---------- 330 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK---------- 330 (396)
T ss_dssp EEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT----------
T ss_pred ceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC----------
Confidence 46999999887653322211 233 89999 9999988652 1235889998765
Q ss_pred CCceeEEEEEeccC-------ccccEEEEEEccCCCEEEEEeC-CCcEEEEecCCCCCceee
Q 003308 365 GTSYVHLYRLQRGL-------TNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 365 ~~~~~~l~~l~rG~-------t~a~I~~IaFSpDg~~LAsgS~-DgTVhIwdl~~~g~~~~~ 418 (832)
....+... .+. ....+..++|||||++|+.++. +++..||.+...++..++
T Consensus 331 --~~~~l~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~ 389 (396)
T 3c5m_A 331 --SAQKLCKH-STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHL 389 (396)
T ss_dssp --BCCEEEEC-CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC--
T ss_pred --ceEEccCC-CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccccc
Confidence 11222111 110 0001456789999999988775 577888887755555544
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.68 E-value=3.6e-06 Score=90.11 Aligned_cols=96 Identities=15% Similarity=0.197 Sum_probs=71.1
Q ss_pred CCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEE-------cCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 003308 299 NVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTAS-------VQGHNINIFKIIPGILGTSSACDAGTSYV 369 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~--aH~~pIs~LaFSPdG~lLATaS-------~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~ 369 (832)
..+.|++||..+++.+.++. .+...+.+++|+| |.++++.+ .+.+ |++||..++ .
T Consensus 216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~-v~~~~~~~g--------------~ 279 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQ-GFVMNFSSG--------------E 279 (329)
T ss_dssp TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCC-EEEEETTTC--------------C
T ss_pred CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcE-EEEEEcCCC--------------e
Confidence 45689999999899988885 5667889999999 54444432 2334 899998876 3
Q ss_pred EEEEEe--ccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 370 HLYRLQ--RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 370 ~l~~l~--rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
.+..+. .+. ...+.+|+|+|||+++++.+.+++|++|++..
T Consensus 280 ~~~~~~~~~~~-~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 280 IIDVFKPVRKH-FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECCSSSC-CSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEEcCCCCc-cCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 444442 111 22389999999998888899999999999864
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.63 E-value=8.7e-06 Score=86.18 Aligned_cols=96 Identities=15% Similarity=0.259 Sum_probs=68.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEE-EEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCc
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISA-LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~-LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t 379 (832)
..|.+|| +++....+..|...|.. ++|+ || ++++++.+|+ ++|| +.++ ... .+..+
T Consensus 244 ~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~-~~l~-~~~g------------~~~---~~~~~-- 300 (347)
T 2gop_A 244 NKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS-VNLY-IWDG------------EIK---PIAKG-- 300 (347)
T ss_dssp CEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE-EEEE-EESS------------SEE---EEECS--
T ss_pred ceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc-EEEE-EcCC------------ceE---EEecC--
Confidence 4688888 66665555677788886 9999 99 9999999986 8999 8633 112 22222
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcE-EEEecCCCCCceeeccCCC
Q 003308 380 NAVIQDISFSDDSNWIMISSSRGTS-HLFAINPLGGSVNFQPTDA 423 (832)
Q Consensus 380 ~a~I~~IaFSpDg~~LAsgS~DgTV-hIwdl~~~g~~~~~~~H~~ 423 (832)
...|.+++|+| +++++++.+++. +||.+. +....+..|+.
T Consensus 301 ~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~--g~~~~lt~~n~ 341 (347)
T 2gop_A 301 RHWIMGFDVDE--IVVYLKETATRLRELFTWD--GEEKQLTDYND 341 (347)
T ss_dssp SSEEEEEEESS--SEEEEEECSSSCCEEEEES--SSEEECCCTTS
T ss_pred CCeEEeeeeeC--cEEEEEcCCCChHHheEeC--CcEEEeccccH
Confidence 34589999999 788888888776 899887 44555665543
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.62 E-value=8.3e-07 Score=95.19 Aligned_cols=98 Identities=7% Similarity=-0.053 Sum_probs=68.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEEcCC-----CEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQG-----HNINIFKIIPGILGTSSACDAGTSYVHLY 372 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSP-dG~lLATaS~dG-----t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~ 372 (832)
....|.+||+.+++....+ .+...+..++|+| ||+.|+.++.++ ..|.+||+..+ ...
T Consensus 166 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~------------~~~--- 229 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS------------NVR--- 229 (396)
T ss_dssp CCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC------------CCE---
T ss_pred CcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC------------cee---
Confidence 4568999999988765444 5667899999999 899888776543 23777787543 111
Q ss_pred EEeccCccccEEEEEEccCCCEEEEEeCC-----CcEEEEecCCC
Q 003308 373 RLQRGLTNAVIQDISFSDDSNWIMISSSR-----GTSHLFAINPL 412 (832)
Q Consensus 373 ~l~rG~t~a~I~~IaFSpDg~~LAsgS~D-----gTVhIwdl~~~ 412 (832)
.+..+.....+..++|||||++|+.++.+ ++|++||+...
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 22221112247889999999998887665 45999998754
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.62 E-value=3.6e-06 Score=89.18 Aligned_cols=89 Identities=9% Similarity=0.102 Sum_probs=56.9
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCC-------CEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003308 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-------HNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (832)
Q Consensus 302 ~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dG-------t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l 374 (832)
.|.++| +++. ..+..+ ..+.++ ||||++||.++.++ ..|.+|| ++ . ...+
T Consensus 201 ~l~~~d--~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~--------------~-~~~l 257 (347)
T 2gop_A 201 DIYIWE--DGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK--------------E-VMGI 257 (347)
T ss_dssp EEEEEE--TTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS--------------C-EEES
T ss_pred cEEEeC--CCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC--------------c-eEec
Confidence 456666 5443 444444 556554 99999998887553 2466777 33 1 1223
Q ss_pred eccCccccEEE-EEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003308 375 QRGLTNAVIQD-ISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 375 ~rG~t~a~I~~-IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~ 418 (832)
..++ ...|.. ++|+ |+ ++++++.+++++|| +. .+....+
T Consensus 258 ~~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~g~~~~~ 297 (347)
T 2gop_A 258 LDEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-DGEIKPI 297 (347)
T ss_dssp STTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EE-SSSEEEE
T ss_pred cccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-CCceEEE
Confidence 2232 234776 9999 99 99999999999999 87 3444333
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.54 E-value=7.6e-05 Score=87.23 Aligned_cols=189 Identities=16% Similarity=0.120 Sum_probs=114.1
Q ss_pred CEEEEEECC--CCcEEEEEeCCCCEEEEEEc------CCEEEEE--eCCEEEEEECCCCceEEEEecCCCccCCCCCCCC
Q 003308 117 TVVHFYSLR--SQSYVHMLKFRSPIYSVRCS------SRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 186 (832)
Q Consensus 117 ~tVrlWDL~--Tg~~V~tL~f~s~V~sV~~S------~r~LAVa--~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~ 186 (832)
+.|.+||+. +++.+.++......+.|+++ ++++.|+ ..++|.|||..|++.+.++.+.......
T Consensus 218 g~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~------ 291 (567)
T 1qks_A 218 GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE------ 291 (567)
T ss_dssp SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT------
T ss_pred CeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc------
Confidence 679999996 99999999887777899998 4666664 5689999999999998888653210000
Q ss_pred CcccceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCcccccccccc
Q 003308 187 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 266 (832)
Q Consensus 187 ~~~~~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~ 266 (832)
.. +...+|.-+... + + ++..
T Consensus 292 -~~---~~p~~rva~i~~-----s------~--------------~~~~------------------------------- 311 (567)
T 1qks_A 292 -QE---YHPEPRVAAILA-----S------H--------------YRPE------------------------------- 311 (567)
T ss_dssp -CC---EESCCCEEEEEE-----C------S--------------SSSE-------------------------------
T ss_pred -cc---ccCCCceEEEEE-----c------C--------------CCCE-------------------------------
Confidence 00 000000000000 0 0 0000
Q ss_pred ccccCCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEE--EEeccCCCCeEEEEEcCCCCEEEEEEcCCC
Q 003308 267 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI--AQFRAHKSPISALCFDPSGILLVTASVQGH 344 (832)
Q Consensus 267 ~~~~p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l--~~~~aH~~pIs~LaFSPdG~lLATaS~dGt 344 (832)
.++.-...|.|.++|....+.+ ..+. .......+.|+|||++|++++....
T Consensus 312 --------------------------~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn 364 (567)
T 1qks_A 312 --------------------------FIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARN 364 (567)
T ss_dssp --------------------------EEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGT
T ss_pred --------------------------EEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCC
Confidence 0011235678999998765432 2332 2234567899999999988876656
Q ss_pred EEEEEeCCCCCCCCCCccCCCCceeEEEEEec-cCccccEEEEE-EccCCCEEEEEe--CCCcEEEEecCCC
Q 003308 345 NINIFKIIPGILGTSSACDAGTSYVHLYRLQR-GLTNAVIQDIS-FSDDSNWIMISS--SRGTSHLFAINPL 412 (832)
Q Consensus 345 ~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~r-G~t~a~I~~Ia-FSpDg~~LAsgS--~DgTVhIwdl~~~ 412 (832)
.|.++|+.++ ..+..+.- |..++.-..+. |.|++..+.+.+ .+++|.|++..+.
T Consensus 365 ~V~ViD~~t~--------------kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 365 KLVVIDTKEG--------------KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp EEEEEETTTT--------------EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred eEEEEECCCC--------------cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 6999999886 33333333 22222111122 588866655444 4689999999873
No 178
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.53 E-value=2.5e-05 Score=82.39 Aligned_cols=103 Identities=10% Similarity=0.015 Sum_probs=75.9
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecc
Q 003308 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (832)
Q Consensus 298 ~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG 377 (832)
..++.|.+||.. ++.+.++..+. ...++.+.++|.+|++++.+++ |..||..++ ..++++.+.
T Consensus 143 ~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG--------------~~~w~~~~~ 205 (276)
T 3no2_A 143 FATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHC-FVQLNLESN--------------RIVRRVNAN 205 (276)
T ss_dssp TTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBTTSE-EEEECTTTC--------------CEEEEEEGG
T ss_pred cCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCCCCe-EEEEeCcCC--------------cEEEEecCC
Confidence 356789999998 99999998764 3456788999999998887765 889998876 567777542
Q ss_pred C----ccccEEEEEEccCCCEEEEEeCC--------CcEEEEecCCCCCceee
Q 003308 378 L----TNAVIQDISFSDDSNWIMISSSR--------GTSHLFAINPLGGSVNF 418 (832)
Q Consensus 378 ~----t~a~I~~IaFSpDg~~LAsgS~D--------gTVhIwdl~~~g~~~~~ 418 (832)
. ....+..++..++|+.+++.+.- +..+++.+.+.| .+.+
T Consensus 206 ~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g-~~~W 257 (276)
T 3no2_A 206 DIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEG-KVVW 257 (276)
T ss_dssp GSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTS-BEEE
T ss_pred CCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCC-CEEE
Confidence 1 12337899999999999887521 345789997754 4444
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.51 E-value=4.5e-05 Score=79.48 Aligned_cols=88 Identities=13% Similarity=0.204 Sum_probs=59.1
Q ss_pred CCeEEEEECC-CCcE---EEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003308 300 VGMVIVRDIV-SKNV---IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (832)
Q Consensus 300 ~G~V~IwDl~-s~~~---l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~ 375 (832)
.+.|.+||+. +++. ...+..+...+..|+|+++|+++++. ++. |.+||.. + ..+..+.
T Consensus 192 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~~-g--------------~~~~~~~ 253 (296)
T 3e5z_A 192 DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTPD-G--------------DELGRVL 253 (296)
T ss_dssp TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECTT-S--------------CEEEEEE
T ss_pred CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECCC-C--------------CEEEEEE
Confidence 4578888876 4444 33443455567789999999988776 554 8999875 3 2333332
Q ss_pred ccCccccEEEEEE-ccCCCEEEEEeCCCcEEEEecCC
Q 003308 376 RGLTNAVIQDISF-SDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 376 rG~t~a~I~~IaF-SpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
.. .. +.+++| +||++.|.+++.++ ||.+.+
T Consensus 254 ~~--~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~ 284 (296)
T 3e5z_A 254 TP--QT-TSNLCFGGPEGRTLYMTVSTE---FWSIET 284 (296)
T ss_dssp CS--SC-CCEEEEESTTSCEEEEEETTE---EEEEEC
T ss_pred CC--CC-ceeEEEECCCCCEEEEEcCCe---EEEEEc
Confidence 21 22 788999 69999999999874 555544
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.51 E-value=2.9e-05 Score=90.78 Aligned_cols=183 Identities=9% Similarity=0.014 Sum_probs=123.9
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEE-EeCCEEEEEECC--CCceEEEEecCCCccCCCCCCCCCccc
Q 003308 116 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAA--TLEIEYAILTNPIVMGHPSAGGIGIGY 190 (832)
Q Consensus 116 ~~tVrlWDL~Tg~~V~tL~f~s~V~sV~~S--~r~LAV-a~~~~I~vwDl~--t~~~~~tl~t~~~~~~~p~~~~~~~~~ 190 (832)
.++|.+||+.|++.+.+|.....+..+.++ +++|.| ..++.|.+||+. +++.+.++....
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--------------- 240 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--------------- 240 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---------------
T ss_pred CCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---------------
Confidence 378999999999999999988788899997 466655 556799999996 888777665321
Q ss_pred ceeeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCcccccccccccccc
Q 003308 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (832)
Q Consensus 191 ~p~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~ 270 (832)
+|+-|+++..+ +.+|+.+ .
T Consensus 241 -----~P~~ia~s~~~-----------------------~pDGk~l-----------~---------------------- 259 (567)
T 1qks_A 241 -----EARSIETSKME-----------------------GWEDKYA-----------I---------------------- 259 (567)
T ss_dssp -----EEEEEEECCST-----------------------TCTTTEE-----------E----------------------
T ss_pred -----CCceeEEcccc-----------------------CCCCCEE-----------E----------------------
Confidence 13445554100 0022221 0
Q ss_pred CCCcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEecc----------CCC-CeEEEEEcCCCCEEEEE
Q 003308 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA----------HKS-PISALCFDPSGILLVTA 339 (832)
Q Consensus 271 p~~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~a----------H~~-pIs~LaFSPdG~lLATa 339 (832)
+....++.|.|+|..+.+++..+.. |.. .+..+.+++++..++..
T Consensus 260 ------------------------v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 260 ------------------------AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp ------------------------EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred ------------------------EEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 0112346799999999998888763 222 58899999998866655
Q ss_pred EcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCC
Q 003308 340 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLG 413 (832)
Q Consensus 340 S~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS-~DgTVhIwdl~~~g 413 (832)
-.+...|.++|..+. ....+..+..+ ....++.|+|||++|.++. .+++|.++|+.+..
T Consensus 316 ~~~~g~v~~vd~~~~------------~~~~v~~i~~~---~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 316 VKETGKILLVDYTDL------------NNLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp ETTTTEEEEEETTCS------------SEEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred ecCCCeEEEEecCCC------------ccceeeeeecc---ccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 554344888998653 11222233222 2377899999999987766 57899999998753
No 181
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.47 E-value=3.8e-06 Score=93.85 Aligned_cols=82 Identities=9% Similarity=0.091 Sum_probs=60.4
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec-
Q 003308 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR- 376 (832)
Q Consensus 298 ~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~r- 376 (832)
..+|.|.+||+.+++... +...|+|++|||+| ++.+..||+ |++|+.... ......++-+
T Consensus 143 ~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~~~------------~~~~k~~I~~P 203 (388)
T 1xip_A 143 NSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWRNG------------EMEKQFEFSLP 203 (388)
T ss_dssp ETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC-EEEEEEETT------------EEEEEEEECCC
T ss_pred ECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc-EEEEcCCCc------------cccccceecCC
Confidence 467899999999887643 44689999999999 677889998 899977654 1111233411
Q ss_pred -------cCccccEEEEEEccCCCEEEEEe
Q 003308 377 -------GLTNAVIQDISFSDDSNWIMISS 399 (832)
Q Consensus 377 -------G~t~a~I~~IaFSpDg~~LAsgS 399 (832)
++ ...|.+|+|.++++|+++=+
T Consensus 204 p~~~~~~~~-~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 204 SELEELPVE-EYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp HHHHTSCTT-TSEEEEEEESSSSEEEEEEE
T ss_pred cccccccCC-CeeEEEEEEecCCeEEEEEc
Confidence 12 35699999999999998733
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.45 E-value=0.00017 Score=76.08 Aligned_cols=85 Identities=18% Similarity=0.159 Sum_probs=53.7
Q ss_pred CeEEEEECCC-CcEEE--------EeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003308 301 GMVIVRDIVS-KNVIA--------QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (832)
Q Consensus 301 G~V~IwDl~s-~~~l~--------~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l 371 (832)
+.|.+||+.+ ++.+. .+..+ ..+..|+|+++|.++++...++. |.+||.. + ..+
T Consensus 204 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~~-g--------------~~~ 266 (333)
T 2dg1_A 204 NRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR-VLVFNKR-G--------------YPI 266 (333)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE-EEEECTT-S--------------CEE
T ss_pred CeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE-EEEECCC-C--------------CEE
Confidence 4677777753 22221 22233 35788999999999888877766 8899873 3 122
Q ss_pred EEEeccCc----cccEEEEEEccCCCEEEEEeCCC
Q 003308 372 YRLQRGLT----NAVIQDISFSDDSNWIMISSSRG 402 (832)
Q Consensus 372 ~~l~rG~t----~a~I~~IaFSpDg~~LAsgS~Dg 402 (832)
..+..... ...+.+++|+||++.|.+++.++
T Consensus 267 ~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 267 GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 23321110 01478999999998887777664
No 183
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.42 E-value=1.2e-05 Score=84.93 Aligned_cols=172 Identities=8% Similarity=0.057 Sum_probs=115.3
Q ss_pred CEEEEEECCCCcEEEEEeCCC--CEEEEEEc--CCEEEEEeCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccce
Q 003308 117 TVVHFYSLRSQSYVHMLKFRS--PIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s--~V~sV~~S--~r~LAVa~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p 192 (832)
+.|.+||.+||+.+.++.... .+.++.++ +++|+ +.++.|++||. +++.++++..... . ....
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~---~--------~~~~ 81 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAG---C--------EMQT 81 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTT---C--------EEEE
T ss_pred CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCC---c--------cccc
Confidence 789999999999999998864 67888885 57777 67889999999 8998888865210 0 0000
Q ss_pred eeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCC
Q 003308 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (832)
Q Consensus 193 ~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~ 272 (832)
. +.. .+|.++.
T Consensus 82 ~-------~~~---------------------------~dG~~lv----------------------------------- 92 (276)
T 3no2_A 82 A-------RIL---------------------------PDGNALV----------------------------------- 92 (276)
T ss_dssp E-------EEC---------------------------TTSCEEE-----------------------------------
T ss_pred c-------EEC---------------------------CCCCEEE-----------------------------------
Confidence 0 000 0222210
Q ss_pred CcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEec------cCCCCeEEEEEcCCCCEEEEEEcCCCEE
Q 003308 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR------AHKSPISALCFDPSGILLVTASVQGHNI 346 (832)
Q Consensus 273 ~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~------aH~~pIs~LaFSPdG~lLATaS~dGt~I 346 (832)
+.....+.|..+|. +++.+.++. .+..+...++++++|.+|++.+.+++ |
T Consensus 93 ----------------------~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v 148 (276)
T 3no2_A 93 ----------------------AWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-V 148 (276)
T ss_dssp ----------------------EEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-E
T ss_pred ----------------------EecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-E
Confidence 00011234444443 444444443 12123456689999999999988886 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003308 347 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 347 ~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
.+||.. + ..++++.++. .+.++++.++|+.+++++.+++|..||..++
T Consensus 149 ~~~d~~-G--------------~~~w~~~~~~---~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 149 REIAPN-G--------------QLLNSVKLSG---TPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp EEECTT-S--------------CEEEEEECSS---CCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred EEECCC-C--------------CEEEEEECCC---CccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 899986 6 5677876542 3667889999999999998888888887664
No 184
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.40 E-value=1.2e-05 Score=93.73 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=56.3
Q ss_pred eEEEEECCCCcEEEEeccCCCC--------eEEEEEcCCCCEEEEEEcCCCEEEEEeC--CCCCCCCCCccCCCCceeEE
Q 003308 302 MVIVRDIVSKNVIAQFRAHKSP--------ISALCFDPSGILLVTASVQGHNINIFKI--IPGILGTSSACDAGTSYVHL 371 (832)
Q Consensus 302 ~V~IwDl~s~~~l~~~~aH~~p--------Is~LaFSPdG~lLATaS~dGt~I~Iwdi--~t~~~~~~s~~~~~~~~~~l 371 (832)
.|.+||+.+++....+..|... +.+++|+|+|+++++++. |+ ++||.+ ..+ .+
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~d~~~~---------------~~ 328 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA-AVLGILDPESG---------------EL 328 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS-CEEEEEETTTT---------------EE
T ss_pred EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc-cEEEEEECCCC---------------cE
Confidence 5677777666654433333222 567999999999999998 87 789954 333 23
Q ss_pred EEEeccCccccEEEE-EEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003308 372 YRLQRGLTNAVIQDI-SFSDDSNWIMISSSRGTSHLFAINPLGG 414 (832)
Q Consensus 372 ~~l~rG~t~a~I~~I-aFSpDg~~LAsgS~DgTVhIwdl~~~g~ 414 (832)
..+..+ ...+..+ +++.+.-++++++.+....||.+...++
T Consensus 329 ~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 329 VDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 344222 2236666 5544444455566676667776654333
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.36 E-value=8.1e-05 Score=88.24 Aligned_cols=98 Identities=11% Similarity=0.032 Sum_probs=67.1
Q ss_pred CCeEEEEECCCCc--EEEEeccCCC--CeEEEEEcCCCCEEEEEEcCCCE-EEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003308 300 VGMVIVRDIVSKN--VIAQFRAHKS--PISALCFDPSGILLVTASVQGHN-INIFKIIPGILGTSSACDAGTSYVHLYRL 374 (832)
Q Consensus 300 ~G~V~IwDl~s~~--~l~~~~aH~~--pIs~LaFSPdG~lLATaS~dGt~-I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l 374 (832)
.+.|.+||+.++. ....+-.|.. .|..++|++++.+++++..+|.. |.+||+.++ ..+..+
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g--------------~~~~~l 375 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG--------------ALLKIF 375 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC--------------CEEEEE
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC--------------CEEEec
Confidence 3578999998764 2345555544 68889999999999999999852 556666444 223344
Q ss_pred eccCccccEEEEEEccCCCEEEEE-e---CCCcEEEEecCCCC
Q 003308 375 QRGLTNAVIQDISFSDDSNWIMIS-S---SRGTSHLFAINPLG 413 (832)
Q Consensus 375 ~rG~t~a~I~~IaFSpDg~~LAsg-S---~DgTVhIwdl~~~g 413 (832)
.-. ...|..++|+||++.|+.. + ..+++.+||+.+..
T Consensus 376 ~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 376 PLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 221 3458899999999876643 2 24689999997653
No 186
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.34 E-value=0.00021 Score=74.15 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=64.9
Q ss_pred CCeEEEEECC-CCc-----EEEEeccCC-CCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003308 300 VGMVIVRDIV-SKN-----VIAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (832)
Q Consensus 300 ~G~V~IwDl~-s~~-----~l~~~~aH~-~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~ 372 (832)
.+.|.+||+. +++ ....+..+. ..+..|+|+++|.++++...++. |.+||..++ .....+
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~-i~~~d~~~g------------~~~~~~ 263 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-IEVFGPDGG------------QPKMRI 263 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-EEEECTTCB------------SCSEEE
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE-EEEEcCCCC------------cEeEEE
Confidence 3567777765 333 334455554 56788999999999988877765 889987654 111212
Q ss_pred EEeccCccccEEEEEEccCCCEEEEE-eCCCcEEEEecCCC
Q 003308 373 RLQRGLTNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPL 412 (832)
Q Consensus 373 ~l~rG~t~a~I~~IaFSpDg~~LAsg-S~DgTVhIwdl~~~ 412 (832)
.+ ....+.+++|+|||++|.++ ..++.|.+|++...
T Consensus 264 ~~----~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 264 RC----PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EC----SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred eC----CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 22 12358999999999965554 45689999998754
No 187
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.31 E-value=0.00023 Score=78.51 Aligned_cols=102 Identities=13% Similarity=0.115 Sum_probs=68.1
Q ss_pred CCCeEEEEECCCC--cEEEEeccC----------CCCeEEEEEcCCCCEEEEEEcC---------CCEEEEEeCCCCCCC
Q 003308 299 NVGMVIVRDIVSK--NVIAQFRAH----------KSPISALCFDPSGILLVTASVQ---------GHNINIFKIIPGILG 357 (832)
Q Consensus 299 ~~G~V~IwDl~s~--~~l~~~~aH----------~~pIs~LaFSPdG~lLATaS~d---------Gt~I~Iwdi~t~~~~ 357 (832)
..|.|.+.|+.+. +.+..+.-. ......++|+|||+.|..+..+ +..|.++|+.+.
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--- 308 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--- 308 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---
Confidence 4568888898754 233333211 1224458899999988776542 234888898876
Q ss_pred CCCccCCCCceeEEEEEeccCccccEEEEEEccCCC-EEEEEe-CCCcEEEEecCCCCCcee
Q 003308 358 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGSVN 417 (832)
Q Consensus 358 ~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~-~LAsgS-~DgTVhIwdl~~~g~~~~ 417 (832)
+.+.++.-|. ..+.++|||||+ ++.++. .+++|.|||+.+......
T Consensus 309 -----------~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 309 -----------QTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred -----------EEEEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 3444554332 378999999999 677776 589999999987654433
No 188
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.28 E-value=0.00031 Score=78.38 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=70.1
Q ss_pred CCCeEEEEECCCCc--EEEEec--------c--CCCCeEEEEEcCCCCEEEEEEcC---------CCEEEEEeCCCCCCC
Q 003308 299 NVGMVIVRDIVSKN--VIAQFR--------A--HKSPISALCFDPSGILLVTASVQ---------GHNINIFKIIPGILG 357 (832)
Q Consensus 299 ~~G~V~IwDl~s~~--~l~~~~--------a--H~~pIs~LaFSPdG~lLATaS~d---------Gt~I~Iwdi~t~~~~ 357 (832)
..|.|.+.|+.+.. .+..+. . ....+..++++|++..|..+..+ ++.|-++|+.+.
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--- 321 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--- 321 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC---
Confidence 46899999997654 333322 0 11234468889999988876531 345888899886
Q ss_pred CCCccCCCCceeEEEEEeccCccccEEEEEEccCCC-EEEEEe-CCCcEEEEecCCCCCceee
Q 003308 358 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 358 ~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~-~LAsgS-~DgTVhIwdl~~~g~~~~~ 418 (832)
+.+.++.-| ..++.|+||+|++ +|.++. .+++|.|+|..+++...++
T Consensus 322 -----------kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 322 -----------ERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp -----------CEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred -----------eEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 344444333 2588999999997 665654 4899999999987655555
No 189
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.27 E-value=2.4e-05 Score=83.64 Aligned_cols=103 Identities=14% Similarity=0.089 Sum_probs=66.8
Q ss_pred CCeEEEEECCCCcEEEEeccC----------CCCeEEEEEcCC-CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCce
Q 003308 300 VGMVIVRDIVSKNVIAQFRAH----------KSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 368 (832)
Q Consensus 300 ~G~V~IwDl~s~~~l~~~~aH----------~~pIs~LaFSPd-G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~ 368 (832)
.+.|++|| .+++.+..+... ......|+|+|+ |.++++...+++ |++||..++
T Consensus 165 ~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G-------------- 228 (329)
T 3fvz_A 165 NSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTK-------------- 228 (329)
T ss_dssp CCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTC--------------
T ss_pred CCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCC--------------
Confidence 56788888 556666666422 234789999999 666666666654 999998765
Q ss_pred eEEEEEeccCccccEEEEEEcc------CCCEEEEEeCCCcEEEEecCCCCCceee
Q 003308 369 VHLYRLQRGLTNAVIQDISFSD------DSNWIMISSSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 369 ~~l~~l~rG~t~a~I~~IaFSp------Dg~~LAsgS~DgTVhIwdl~~~g~~~~~ 418 (832)
..+..+........+.+++|+| +|+..++.+.+.+|++|++.++.....+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 229 EFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp CEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred cEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 3344443222233588999999 4443334444568999999775444444
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.24 E-value=0.00013 Score=86.46 Aligned_cols=98 Identities=6% Similarity=-0.036 Sum_probs=63.7
Q ss_pred CCeEEEEECCC------Cc-EEEEeccCCCCeEEEEEcCCCCEEEEEEcCCC---EEEEEeCCCCCCCCCCccCCCCcee
Q 003308 300 VGMVIVRDIVS------KN-VIAQFRAHKSPISALCFDPSGILLVTASVQGH---NINIFKIIPGILGTSSACDAGTSYV 369 (832)
Q Consensus 300 ~G~V~IwDl~s------~~-~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt---~I~Iwdi~t~~~~~~s~~~~~~~~~ 369 (832)
...|.+||+.+ +. .+..+..|...+.. .|+|||..|+..+.++. .|.+||+..+.. ....
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~---------~~~~ 327 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE---------SKWK 327 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG---------GGCE
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc---------ccce
Confidence 34788999876 43 45667777766655 59999998877665432 477888865400 0012
Q ss_pred EEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003308 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (832)
Q Consensus 370 ~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~ 410 (832)
.+........|.+++|++++.++++...|+..+||.+.
T Consensus 328 ---~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~ 365 (710)
T 2xdw_A 328 ---VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD 365 (710)
T ss_dssp ---EEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred ---eccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEE
Confidence 22222221358899999888899999999976665544
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.24 E-value=0.00059 Score=71.84 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=60.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEE-cCCCEEEEEeCCCCCCCCCCccCCCCceeE-----EEEE
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVH-----LYRL 374 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS-~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~-----l~~l 374 (832)
+.|..+|..+++... +..+...+..++|+|||++|..+. .++. |.+||+.+. +. .... ...+
T Consensus 162 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~--g~--------~~~~~~~~~~~~~ 229 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDD--GV--------TIQPFGATIPYYF 229 (333)
T ss_dssp EEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTT--SS--------SEEEEEEEEEEEC
T ss_pred ceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCC--Cc--------CcccccceEEEec
Confidence 456666666554432 223334578999999999665544 4554 899998642 00 0111 1111
Q ss_pred eccCccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003308 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (832)
Q Consensus 375 ~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~ 410 (832)
.+. ..+..|+|++||+++++...++.|.+|+..
T Consensus 230 -~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 230 -TGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp -CSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred -CCC--CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 111 247889999999988888888999999873
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.20 E-value=0.00012 Score=74.42 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=68.1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCc
Q 003308 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (832)
Q Consensus 300 ~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t 379 (832)
.+.|.+||..+.........+...+..|+++++|.++++...++. |.+||.... ... .....+.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~-------------~~~-~~~~~~~- 233 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGST-------------TST-VLPFTGL- 233 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCS-------------CCE-ECCCCSC-
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCC-------------cce-eeccCCC-
Confidence 357888888776554433344467889999999988887766666 889987543 011 1111111
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003308 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 380 ~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
..+.+|+|++||+++++.+.+++|++|++...
T Consensus 234 -~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 234 -NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp -SCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred -CCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 24899999999999889999999999998653
No 193
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.16 E-value=4.1e-06 Score=91.55 Aligned_cols=98 Identities=7% Similarity=0.012 Sum_probs=74.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEc----------CCCEEEEEeCCCCCCCCCCccCCCCce
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSY 368 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~----------dGt~I~Iwdi~t~~~~~~s~~~~~~~~ 368 (832)
.++.|.+||..+++++.+++.+..| .++|||||++|++++. ++ .|.+||+.+.
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~-~v~v~d~~t~-------------- 91 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSD-VVEVWDADKL-------------- 91 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEE-EEEEEETTTC--------------
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCC-EEEEEECcCC--------------
Confidence 4679999999999999999988777 8999999999998873 33 4899998775
Q ss_pred eEEEEEeccC----ccccEEEEEEccCCCEEEEEeC--CCcEEEEecCCCC
Q 003308 369 VHLYRLQRGL----TNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPLG 413 (832)
Q Consensus 369 ~~l~~l~rG~----t~a~I~~IaFSpDg~~LAsgS~--DgTVhIwdl~~~g 413 (832)
..+.++.-+. .......++|||||++|.+++. +++|.|||+.+.+
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~ 142 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD 142 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc
Confidence 2333332110 0112457899999999999874 6899999998753
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.16 E-value=0.00021 Score=74.43 Aligned_cols=91 Identities=12% Similarity=0.076 Sum_probs=60.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCC-CCCCCCCCccCCCCce-eEEEEEeccC
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII-PGILGTSSACDAGTSY-VHLYRLQRGL 378 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~-t~~~~~~s~~~~~~~~-~~l~~l~rG~ 378 (832)
+.|..+|.. ++ +..+..+......++|+|||++|++.+.+++ |.+|++. ++ .. .....+ ..
T Consensus 153 ~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~-i~~~~~~~~g------------~~~~~~~~~-~~- 215 (296)
T 3e5z_A 153 RWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNA-THRYCLNARG------------ETEYQGVHF-TV- 215 (296)
T ss_dssp CEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTE-EEEEEECSSS------------CEEEEEEEE-CC-
T ss_pred cEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCe-EEEEEECCCC------------cCcCCCeEe-eC-
Confidence 456666655 43 3445566667789999999999966555554 8999986 32 11 111122 11
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003308 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (832)
Q Consensus 379 t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~ 410 (832)
....+.+|+|++||++.++. ++.|.+|+..
T Consensus 216 ~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 216 EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 22336789999999977666 8899999975
No 195
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.97 E-value=0.002 Score=67.59 Aligned_cols=88 Identities=7% Similarity=0.055 Sum_probs=55.2
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCC
Q 003308 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (832)
Q Consensus 322 ~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~D 401 (832)
.....++|+|||+.|..+......|.+||+... .+. ....+.+..+.. .......+++++||++.++....
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~-~G~------~~~~~~~~~~~~--~~~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ-TGQ------ISNRRSVYKLEK--EEQIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT-TCC------EEEEEEEEECCG--GGCEEEEEEEBTTSCEEEEEETT
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCC-CCc------ccCcEEEEECCC--CCCCCCeeEECCCCCEEEEEcCC
Confidence 345789999999977655544344889987421 000 001122223221 12347899999999988888888
Q ss_pred CcEEEEecCCCCCceee
Q 003308 402 GTSHLFAINPLGGSVNF 418 (832)
Q Consensus 402 gTVhIwdl~~~g~~~~~ 418 (832)
++|.+|+..++.....+
T Consensus 220 ~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp TEEEEECTTTCCEEEEE
T ss_pred CEEEEEcCCCceEEEEE
Confidence 89999988754433344
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.92 E-value=0.00038 Score=82.35 Aligned_cols=97 Identities=9% Similarity=-0.041 Sum_probs=59.2
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEc---CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 302 ~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~---dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
.|.+||..+++. ..+..+...+....| ++|.+++++.. +++ |.+||+.++.. ..... +-...
T Consensus 253 ~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~-l~~~d~~~~~~---------~~~~~---l~~~~ 317 (695)
T 2bkl_A 253 DVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQR-VFEVDPAKPAR---------ASWKE---IVPED 317 (695)
T ss_dssp EEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCE-EEEEBTTBCSG---------GGCEE---EECCC
T ss_pred EEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCE-EEEEeCCCCCc---------cCCeE---EecCC
Confidence 566777655543 445555556666666 66665555442 344 78888866410 00122 21122
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003308 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (832)
Q Consensus 379 t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~ 414 (832)
....|.+++|+ +++++++.+.|++.+||.+...++
T Consensus 318 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 318 SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 12348889999 788999999999999998874333
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.91 E-value=0.00092 Score=79.73 Aligned_cols=97 Identities=6% Similarity=-0.041 Sum_probs=63.7
Q ss_pred CCeEEEEECCCC--cEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecc
Q 003308 300 VGMVIVRDIVSK--NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (832)
Q Consensus 300 ~G~V~IwDl~s~--~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG 377 (832)
.+.|.+||+.++ +....+..+...+..++|+ ++.++++...+|. .+||.+... ...+..+.-
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~-------------g~~~~~l~~- 403 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLD-------------GKPAGAVSL- 403 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETT-------------SCEEEECBC-
T ss_pred CCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC-------------CCceeeccC-
Confidence 457899999874 3444455555567788888 7788899999986 677765421 012233321
Q ss_pred CccccEEEEEEccCCCEEEEEe----CCCcEEEEecCCC
Q 003308 378 LTNAVIQDISFSDDSNWIMISS----SRGTSHLFAINPL 412 (832)
Q Consensus 378 ~t~a~I~~IaFSpDg~~LAsgS----~DgTVhIwdl~~~ 412 (832)
.....|..++|+||++.|+... ..++|.+||+.+.
T Consensus 404 ~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 404 PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 1123488999999998766332 2478999998653
No 198
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.91 E-value=0.0066 Score=63.60 Aligned_cols=84 Identities=14% Similarity=0.204 Sum_probs=56.0
Q ss_pred CeEEEEEC--CCCc-----EEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003308 301 GMVIVRDI--VSKN-----VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (832)
Q Consensus 301 G~V~IwDl--~s~~-----~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~ 373 (832)
+.|.+||+ .++. .+..+..+......|+++++|.+.++....++ |.+||..++ ..+..
T Consensus 171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG--------------~~~~~ 235 (297)
T 3g4e_A 171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTG--------------KRLQT 235 (297)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTC--------------CEEEE
T ss_pred CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCc--------------eEEEE
Confidence 45666665 3332 23344444456788999999998877766665 889988765 33334
Q ss_pred EeccCccccEEEEEEc-cCCCEEEEEeCC
Q 003308 374 LQRGLTNAVIQDISFS-DDSNWIMISSSR 401 (832)
Q Consensus 374 l~rG~t~a~I~~IaFS-pDg~~LAsgS~D 401 (832)
+.-. ...+.+++|+ ||++.|.+++.+
T Consensus 236 i~~p--~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 236 VKLP--VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EECS--SSBEEEEEEESGGGCEEEEEEBC
T ss_pred EECC--CCCceEEEEeCCCCCEEEEEcCC
Confidence 4322 2358999998 999988777654
No 199
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.88 E-value=0.0011 Score=73.45 Aligned_cols=54 Identities=11% Similarity=-0.100 Sum_probs=44.4
Q ss_pred EEEEEECCCCcEEEEEeCC-CCEEEEEEc--CCEEEEEe-----------CCEEEEEECCCCceEEEEec
Q 003308 118 VVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAICQ-----------AAQVHCFDAATLEIEYAILT 173 (832)
Q Consensus 118 tVrlWDL~Tg~~V~tL~f~-s~V~sV~~S--~r~LAVa~-----------~~~I~vwDl~t~~~~~tl~t 173 (832)
+|.++|+.+++.+.++... .+ .+.++ ++.|.|+. ++.|.+||+.|++.+.++..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v 114 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence 8999999999999999864 34 68887 45666653 57899999999999999864
No 200
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.87 E-value=0.0028 Score=71.87 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=57.3
Q ss_pred CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCc---------c---ccEEEEEEcc
Q 003308 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT---------N---AVIQDISFSD 390 (832)
Q Consensus 323 pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t---------~---a~I~~IaFSp 390 (832)
....|.+||||++|..+......|.+||+... + ..+.+..+.-|-. . ..-+.+++||
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~--~---------~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp 390 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNP--F---------KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR 390 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSST--T---------SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecCC--C---------CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC
Confidence 46789999999999988887677999998632 0 1233444433310 0 0146899999
Q ss_pred CCCEEEEEe------------CCCcEEEE--ecCCCCCceeec
Q 003308 391 DSNWIMISS------------SRGTSHLF--AINPLGGSVNFQ 419 (832)
Q Consensus 391 Dg~~LAsgS------------~DgTVhIw--dl~~~g~~~~~~ 419 (832)
||++|.++. .+..+.++ ++.+.+| .++.
T Consensus 391 DGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~~~ 432 (462)
T 2ece_A 391 DGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LEID 432 (462)
T ss_dssp TSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EEEE
T ss_pred CCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ceeC
Confidence 999999998 33345555 7787767 5553
No 201
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.87 E-value=5.5e-06 Score=91.00 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=48.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecc
Q 003308 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (832)
Q Consensus 298 ~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG 377 (832)
..+|.|+.||..+++.+..+..+. ...++|++.+|++++.+|+ |..||..++ ..++++..+
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG--------------~~~W~~~~~ 159 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTR--------------ELRWNATYF 159 (369)
T ss_dssp EEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSS--------------SCCCEEEEE
T ss_pred eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCC--------------CEEEeEecc
Confidence 356789999999999988887664 2457789999999999887 899999876 222332211
Q ss_pred CccccEEEEEEccCC---CEEEEEeCCCcEEEEecCCCC
Q 003308 378 LTNAVIQDISFSDDS---NWIMISSSRGTSHLFAINPLG 413 (832)
Q Consensus 378 ~t~a~I~~IaFSpDg---~~LAsgS~DgTVhIwdl~~~g 413 (832)
.....+++.+. ..+.+++.||.++.||..++.
T Consensus 160 ----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 160 ----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp ----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred ----cccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 01223345542 456778999999999998643
No 202
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.86 E-value=0.018 Score=61.37 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=52.8
Q ss_pred CeEEEEECC--CC-c-----EEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003308 301 GMVIVRDIV--SK-N-----VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (832)
Q Consensus 301 G~V~IwDl~--s~-~-----~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~ 372 (832)
+.|.+||+. ++ + .+..+..+......++++++|.+.++....+. |.+||. .+ ..+.
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g--------------~~~~ 264 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DG--------------NHIA 264 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TC--------------CEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CC--------------CEEE
Confidence 456666654 33 2 23334334455678999999998887765555 788886 33 2223
Q ss_pred EEeccCccccEEEEEEc-cCCCEEEEEeCCC
Q 003308 373 RLQRGLTNAVIQDISFS-DDSNWIMISSSRG 402 (832)
Q Consensus 373 ~l~rG~t~a~I~~IaFS-pDg~~LAsgS~Dg 402 (832)
.+.- ....+.+++|+ +|++.|.+++.++
T Consensus 265 ~i~~--~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 265 RYEV--PGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEC--SCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEC--CCCCcEEEEEecCCCCEEEEEecCC
Confidence 3321 12359999998 9988877666544
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.85 E-value=0.017 Score=58.78 Aligned_cols=92 Identities=9% Similarity=0.035 Sum_probs=62.8
Q ss_pred CCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 300 VGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 300 ~G~V~IwDl~s~~~l~~-~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
.+.|.+||. +++.... +..+...+.+|+|+++|.++++...++. |.+||. ++ . ...+.+..
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g------------~-~~~~~~~~-- 222 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SG------------E-ITEFKIPT-- 222 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TC------------C-EEEEECSS--
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CC------------c-EEEEECCC--
Confidence 356777887 5554332 3344556889999999998777655555 888988 54 1 12222221
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003308 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (832)
Q Consensus 379 t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl 409 (832)
....+.+|+++++|++.++...++.|.+|+.
T Consensus 223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 1234899999999997777667889999987
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.85 E-value=0.0007 Score=76.44 Aligned_cols=75 Identities=13% Similarity=0.165 Sum_probs=54.5
Q ss_pred EEEcCCCCEEEEEEcC---------CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCC-EEE
Q 003308 327 LCFDPSGILLVTASVQ---------GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIM 396 (832)
Q Consensus 327 LaFSPdG~lLATaS~d---------Gt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~-~LA 396 (832)
++|+|||++|..+..+ +..|-++|+.+. +.+.++.-|. ..+.|+|+|||+ ++.
T Consensus 324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~--------------kvv~~I~vg~---~P~gia~spDg~~~ly 386 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG--------------ERINKIELGH---EIDSINVSQDAEPLLY 386 (426)
T ss_dssp EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC--------------CEEEEEEEEE---EECEEEECCSSSCEEE
T ss_pred eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC--------------eEEEEEECCC---CcCeEEEccCCCEEEE
Confidence 6899998877665421 124889999876 3344443232 378899999999 888
Q ss_pred EEe-CCCcEEEEecCCCCCceee
Q 003308 397 ISS-SRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 397 sgS-~DgTVhIwdl~~~g~~~~~ 418 (832)
++. .+++|.|+|+.+......+
T Consensus 387 v~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 387 ALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEETTTTEEEEEETTTCCEEEEE
T ss_pred EEcCCCCeEEEEECCCCCEEEEe
Confidence 888 5999999999987655454
No 205
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.75 E-value=0.00057 Score=80.79 Aligned_cols=94 Identities=7% Similarity=0.066 Sum_probs=59.8
Q ss_pred CeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCCCEEEEEEcCC-C--EEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 003308 301 GMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQG-H--NINIFKIIPGILGTSSACDAGTSYVHLYR 373 (832)
Q Consensus 301 G~V~IwDl~s~~----~l~~~~aH~~pIs~LaFSPdG~lLATaS~dG-t--~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~ 373 (832)
..|++|++.++. ++.....|...+..++|||||++|+.++.++ . .|.+|+...+ ....+..
T Consensus 202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~------------~~~~l~~ 269 (695)
T 2bkl_A 202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK------------DFRLLVK 269 (695)
T ss_dssp CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS------------SCEEEEE
T ss_pred CEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC------------ceEEeec
Confidence 469999998875 4444456667889999999999998877665 2 3455543322 1233221
Q ss_pred EeccCccccEEEEEEccCCCEEEEEeC----CCcEEEEecCCCC
Q 003308 374 LQRGLTNAVIQDISFSDDSNWIMISSS----RGTSHLFAINPLG 413 (832)
Q Consensus 374 l~rG~t~a~I~~IaFSpDg~~LAsgS~----DgTVhIwdl~~~g 413 (832)
+. . .+....| +||+ |+..+. +++|.+|++...+
T Consensus 270 ---~~-~-~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 270 ---GV-G-AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp ---CS-S-CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred ---CC-C-ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 11 1 2455556 6777 555554 5789999987653
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.70 E-value=0.0085 Score=66.61 Aligned_cols=73 Identities=12% Similarity=0.257 Sum_probs=49.7
Q ss_pred CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe-c----cC--------ccccEEEEEEc
Q 003308 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-R----GL--------TNAVIQDISFS 389 (832)
Q Consensus 323 pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~-r----G~--------t~a~I~~IaFS 389 (832)
....|+|+|+|.++++-+...+.|++|++..+ . +..+. + |. .-.....|+++
T Consensus 324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G--------------~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd 388 (409)
T 3hrp_A 324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG--------------Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICYD 388 (409)
T ss_dssp SEEEEEECTTCCEEEEETTTTCEEEEEETTTT--------------E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEEC
T ss_pred CCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC--------------E-EEEEeCCCCCCCcCCCChhceEeCCceEEEEc
Confidence 46789999999966654404456999997665 1 11111 0 10 01237899999
Q ss_pred cCCCEEEEEeCCCcEEEEecC
Q 003308 390 DDSNWIMISSSRGTSHLFAIN 410 (832)
Q Consensus 390 pDg~~LAsgS~DgTVhIwdl~ 410 (832)
+||.++++-+..++|+.++++
T Consensus 389 ~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 389 GEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp SSSEEEEEESTTCEEEEEEEC
T ss_pred CCCCEEEEECCCCeEEEEEeC
Confidence 999888888888999888763
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.70 E-value=0.00018 Score=80.37 Aligned_cols=90 Identities=9% Similarity=0.081 Sum_probs=72.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
.+|.|++||+.+......+..|..+|.++.+.+.. +|+++.||. +.+||+..+ ... .+
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~-L~v~dl~~~--------------~~~-~~---- 161 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVND-LSALDLRTK--------------STK-QL---- 161 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSE-EEEEETTTC--------------CEE-EE----
T ss_pred cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCC-EEEEEccCC--------------ccc-cc----
Confidence 45789999999877777778888899998887653 888999997 899999876 121 22
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 003308 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (832)
Q Consensus 379 t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g 413 (832)
...|.++||||+| ++.+..||++++|+.....
T Consensus 162 -~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 162 -AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp -EESEEEEEECSSE--EEEEETTSCEEEEEEETTE
T ss_pred -cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcc
Confidence 1249999999999 7889999999999876543
No 208
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.70 E-value=0.0029 Score=75.22 Aligned_cols=104 Identities=12% Similarity=0.142 Sum_probs=73.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCC-----------CCe------------------------EEEEEcCCCCEEEEEEcC
Q 003308 298 DNVGMVIVRDIVSKNVIAQFRAHK-----------SPI------------------------SALCFDPSGILLVTASVQ 342 (832)
Q Consensus 298 ~~~G~V~IwDl~s~~~l~~~~aH~-----------~pI------------------------s~LaFSPdG~lLATaS~d 342 (832)
..+|.|.++|..+++++..++... .++ ..++|+|++.+|.+...+
T Consensus 334 ~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~ 413 (677)
T 1kb0_A 334 PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQN 413 (677)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChh
Confidence 456788888888888776665221 111 257899998888776542
Q ss_pred -------------------------------------------CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCc
Q 003308 343 -------------------------------------------GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (832)
Q Consensus 343 -------------------------------------------Gt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t 379 (832)
|+ |..||+.++ +.++++.-+.
T Consensus 414 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~-l~A~D~~tG--------------~~~W~~~~~~- 477 (677)
T 1kb0_A 414 VPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR-LLAWDPVAQ--------------KAAWSVEHVS- 477 (677)
T ss_dssp CCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE-EEEEETTTT--------------EEEEEEEESS-
T ss_pred cceeeecccccccccccccccccccccccccccccccCCCCCccE-EEEEeCCCC--------------cEEeecCCCC-
Confidence 43 788888876 5666665432
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003308 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (832)
Q Consensus 380 ~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~ 419 (832)
.++...++.++.++.+++.||++++||+.++...-.+.
T Consensus 478 --~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 478 --PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp --SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred --CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 35566788889999999999999999999876555554
No 209
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.69 E-value=0.0041 Score=65.69 Aligned_cols=57 Identities=4% Similarity=0.021 Sum_probs=45.5
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEE--EEEcCCEEEEE--eCCEEEEEECCCCceEEEEec
Q 003308 117 TVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAIC--QAAQVHCFDAATLEIEYAILT 173 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~s--V~~S~r~LAVa--~~~~I~vwDl~t~~~~~tl~t 173 (832)
..|+.+|++||+.+.++.++...+. |.+..+.|-++ .++.+.+||+.|++.+.++..
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~ 125 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY 125 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEEC
Confidence 5799999999999999998776654 56655555443 478999999999999888753
No 210
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.69 E-value=0.011 Score=62.47 Aligned_cols=175 Identities=13% Similarity=0.127 Sum_probs=113.3
Q ss_pred CEEEEEECCCCcEEEEEeCCCC--EEEEEEcCCEEEEE--eCCEEEEEECCCCceEEEEecCCCccCCCCCCCCCcccce
Q 003308 117 TVVHFYSLRSQSYVHMLKFRSP--IYSVRCSSRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~--V~sV~~S~r~LAVa--~~~~I~vwDl~t~~~~~tl~t~~~~~~~p~~~~~~~~~~p 192 (832)
.+|+++|++|++.+.++..+.. ...+.+.++.|-++ .++.|.+||..|++.+.++..- .+. +
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~----------g--- 109 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD----------G--- 109 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS----------C---
T ss_pred CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC----------e---
Confidence 7899999999999999987553 33566666666554 3779999999999988777431 000 0
Q ss_pred eeeccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCC
Q 003308 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (832)
Q Consensus 193 ~Alg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~ 272 (832)
+. |++. |..+
T Consensus 110 ~g-----lt~D-----------------------------g~~l------------------------------------ 119 (266)
T 2iwa_A 110 WG-----LATD-----------------------------GKIL------------------------------------ 119 (266)
T ss_dssp CE-----EEEC-----------------------------SSSE------------------------------------
T ss_pred EE-----EEEC-----------------------------CCEE------------------------------------
Confidence 11 1111 1100
Q ss_pred CcCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccC--CC---CeEEEEEcCCCCEEEEEEcCCCEEE
Q 003308 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH--KS---PISALCFDPSGILLVTASVQGHNIN 347 (832)
Q Consensus 273 ~~~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH--~~---pIs~LaFSPdG~lLATaS~dGt~I~ 347 (832)
++ ++.+++|.++|..+.+.+..+.-- .. .+..|.|. +|++.++...++ .|.
T Consensus 120 ---------------------~v-s~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~-~V~ 175 (266)
T 2iwa_A 120 ---------------------YG-SDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD-CIA 175 (266)
T ss_dssp ---------------------EE-ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS-EEE
T ss_pred ---------------------EE-ECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC-eEE
Confidence 01 113568999999999988888732 22 35688888 886665554444 588
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEEeccCc----------cccEEEEEEccCCCEEEE-EeCCCcEEEEecCCC
Q 003308 348 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLT----------NAVIQDISFSDDSNWIMI-SSSRGTSHLFAINPL 412 (832)
Q Consensus 348 Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t----------~a~I~~IaFSpDg~~LAs-gS~DgTVhIwdl~~~ 412 (832)
+.|..++ .+.....+. |.. ......|+|+||++.|.+ +-..+++.+.++.+.
T Consensus 176 vID~~tg------------~V~~~I~~~-g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 176 RISAKDG------------TLLGWILLP-NLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEETTTC------------CEEEEEECH-HHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEECCCC------------cEEEEEECC-CcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999887 233333331 210 124689999999876555 446788888888765
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.64 E-value=0.00041 Score=74.64 Aligned_cols=57 Identities=9% Similarity=0.027 Sum_probs=42.7
Q ss_pred CEEEEEECCCCcEEEEEeCCC-------CEEEEEEc--CCEEEEE-----eCCEEEEEECCCCceEEEEec
Q 003308 117 TVVHFYSLRSQSYVHMLKFRS-------PIYSVRCS--SRVVAIC-----QAAQVHCFDAATLEIEYAILT 173 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s-------~V~sV~~S--~r~LAVa-----~~~~I~vwDl~t~~~~~tl~t 173 (832)
..|.+||+++++.++++.++. .+..|+++ ...+-++ .+..|.+||+.+++..+.+..
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence 679999999999999998742 35788887 2344343 467999999998886665544
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.64 E-value=0.0094 Score=61.56 Aligned_cols=100 Identities=11% Similarity=0.135 Sum_probs=61.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEc----CCCCEEEEEEcCCCEEEEEeCC-CCCCCCCCccCCCCceeEEEEEe
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFD----PSGILLVTASVQGHNINIFKII-PGILGTSSACDAGTSYVHLYRLQ 375 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFS----PdG~lLATaS~dGt~I~Iwdi~-t~~~~~~s~~~~~~~~~~l~~l~ 375 (832)
+.|..||.. ++... +..+......++|+ |||+.|..+......|.+||+. .+.. .....+..+.
T Consensus 153 ~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~---------~~~~~~~~~~ 221 (314)
T 1pjx_A 153 GSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI---------ENKKVWGHIP 221 (314)
T ss_dssp EEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE---------EEEEEEEECC
T ss_pred CeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc---------ccceEEEECC
Confidence 456677765 54433 22333456889999 9997665554433348999875 2200 0001112221
Q ss_pred ccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003308 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 376 rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
+.....+..|+|++||++.++...++.|.+|+..+.
T Consensus 222 -~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g 257 (314)
T 1pjx_A 222 -GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG 257 (314)
T ss_dssp -CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred -CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC
Confidence 111034788999999999988888999999998643
No 213
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.57 E-value=0.00022 Score=79.48 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=75.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEc---------CCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003308 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVH 370 (832)
Q Consensus 300 ~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~---------dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~ 370 (832)
++.|.+.|..+++.+.+++.-..| . |+|||||++|..++. +...|.+||..+. ..
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--------------~v 121 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--------------LP 121 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------------CE
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------------eE
Confidence 579999999999999999866667 4 999999998877762 1234999999886 23
Q ss_pred EEEEecc-----CccccEEEEEEccCCCEEEEEeC--CCcEEEEecCCCCCceee
Q 003308 371 LYRLQRG-----LTNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 371 l~~l~rG-----~t~a~I~~IaFSpDg~~LAsgS~--DgTVhIwdl~~~g~~~~~ 418 (832)
+.++.-+ .....-..++|||||++|.++.. +++|.|+|+.+..-..++
T Consensus 122 ~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI 176 (386)
T 3sjl_D 122 TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML 176 (386)
T ss_dssp EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 3333211 11112446899999999998874 689999999886544444
No 214
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.57 E-value=0.0033 Score=66.57 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=44.2
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEE--EEEcCCEEEEE--eCCEEEEEECCCCceEEEEec
Q 003308 117 TVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAIC--QAAQVHCFDAATLEIEYAILT 173 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~s--V~~S~r~LAVa--~~~~I~vwDl~t~~~~~tl~t 173 (832)
+.|+.+|++|++.+.++ ++...+. |.+.++.|-++ .++.+.+||+.|++.+.++..
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 56999999999999999 8776654 66665444433 478999999999999888853
No 215
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.57 E-value=0.00071 Score=69.71 Aligned_cols=93 Identities=13% Similarity=0.222 Sum_probs=68.3
Q ss_pred CCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003308 299 NVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~--aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~r 376 (832)
..+.|.+||.. ++.+..+. .+...+..|+|+|+|+++++.+.++. |++||... ..+..+..
T Consensus 140 ~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~g---------------~~~~~~~~ 202 (286)
T 1q7f_A 140 KVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC-VKVFNYEG---------------QYLRQIGG 202 (286)
T ss_dssp TTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE-EEEEETTC---------------CEEEEESC
T ss_pred CCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE-EEEEcCCC---------------CEEEEEcc
Confidence 45789999964 55666664 45567899999999998888777765 89999643 23333321
Q ss_pred -cCccccEEEEEEccCCCEEEEEeCCC-cEEEEec
Q 003308 377 -GLTNAVIQDISFSDDSNWIMISSSRG-TSHLFAI 409 (832)
Q Consensus 377 -G~t~a~I~~IaFSpDg~~LAsgS~Dg-TVhIwdl 409 (832)
|. ...+..|+|++||+++++...++ +|.+|+.
T Consensus 203 ~g~-~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 203 EGI-TNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp TTT-SCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred CCc-cCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 11 13488999999999998888886 9999985
No 216
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.56 E-value=0.0044 Score=73.81 Aligned_cols=98 Identities=12% Similarity=0.110 Sum_probs=62.4
Q ss_pred CCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCCCEEEEEEcCC----CEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003308 300 VGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQG----HNINIFKIIPGILGTSSACDAGTSYVHL 371 (832)
Q Consensus 300 ~G~V~IwDl~s~~----~l~~~~aH~~pIs~LaFSPdG~lLATaS~dG----t~I~Iwdi~t~~~~~~s~~~~~~~~~~l 371 (832)
...|.+|++.++. ++.....|...+..+.|||||++|+..+.++ ..|.+||+.++ ....+
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~------------~~~~~ 309 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG------------KIGPV 309 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT------------EECCC
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC------------CCccc
Confidence 3468899987765 3333334444588999999999998877654 35888888653 00001
Q ss_pred EEEeccCccccEEEEEEccCCCEEEEEeCCC----cEEEEecCCC
Q 003308 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSRG----TSHLFAINPL 412 (832)
Q Consensus 372 ~~l~rG~t~a~I~~IaFSpDg~~LAsgS~Dg----TVhIwdl~~~ 412 (832)
..+..+. .. +... ++|||++|+..+.++ .|.+|++...
T Consensus 310 ~~l~~~~-~~-~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 310 TALIPDL-KA-QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEEECSS-SS-CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEecCCC-Cc-eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 2232222 12 3333 359999999988754 4888998764
No 217
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.56 E-value=0.13 Score=55.02 Aligned_cols=94 Identities=12% Similarity=0.152 Sum_probs=62.2
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003308 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (832)
Q Consensus 297 ~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~r 376 (832)
+..+|.|..+|..+++.+..... .....+.. ++..|..++.+|. +..+|..++ ..+++...
T Consensus 245 ~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~-l~~~d~~tG--------------~~~w~~~~ 305 (376)
T 3q7m_A 245 LAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDR-VMALTIDGG--------------VTLWTQSD 305 (376)
T ss_dssp ECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCC-EEEEETTTC--------------CEEEEECT
T ss_pred EecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCe-EEEEECCCC--------------cEEEeecc
Confidence 34578899999999998877653 33445544 3566777777877 789999887 44555431
Q ss_pred cCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003308 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 377 G~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
. ....+..... .+..|.+++.+|.+++||..++
T Consensus 306 ~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 306 L-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp T-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTC
T ss_pred c-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCC
Confidence 1 1111222222 3467888999999999998774
No 218
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.54 E-value=0.0024 Score=64.72 Aligned_cols=95 Identities=9% Similarity=-0.000 Sum_probs=62.5
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCc
Q 003308 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (832)
Q Consensus 300 ~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t 379 (832)
.+.|.+||..+.........+...+.+|+|+|+|+++++...++. |.+||.... ........+.
T Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~~~--------------~~~~~~~~~~- 191 (270)
T 1rwi_B 128 NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VVKLEAESN--------------NQVVLPFTDI- 191 (270)
T ss_dssp GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EEEECTTTC--------------CEEECCCSSC-
T ss_pred CCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EEEEecCCC--------------ceEeecccCC-
Confidence 345666765544332222233345788999999998777666655 889987654 1111111111
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 380 ~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
..+.+|++++||+++++...++.|.+|+...
T Consensus 192 -~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 192 -TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp -CSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred -CCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 3488999999998888887889999998754
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.47 E-value=0.014 Score=66.29 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=67.3
Q ss_pred CCCeEEEEECCCCcEEEEeccC-C-CCeEEEEE--cCCCCEEEEEEc-----CCCEEEEEeCCCCCCCCCCccCCCCcee
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAH-K-SPISALCF--DPSGILLVTASV-----QGHNINIFKIIPGILGTSSACDAGTSYV 369 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH-~-~pIs~LaF--SPdG~lLATaS~-----dGt~I~Iwdi~t~~~~~~s~~~~~~~~~ 369 (832)
....|.+||+.+++.+.++..- . ..-..|.| +|+|+++..++. ....|.+|....+. ....
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~----------~~~~ 295 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK----------WNAE 295 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE----------EEEE
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc----------eeEE
Confidence 4568999999999988888753 1 22345655 999999887776 54446666553320 0011
Q ss_pred EEEEEec----c--------Cc--cccEEEEEEccCCCEEEEEeC-CCcEEEEecCCC
Q 003308 370 HLYRLQR----G--------LT--NAVIQDISFSDDSNWIMISSS-RGTSHLFAINPL 412 (832)
Q Consensus 370 ~l~~l~r----G--------~t--~a~I~~IaFSpDg~~LAsgS~-DgTVhIwdl~~~ 412 (832)
....+.. + .. .....+|.+||||++|.++.. .++|.+||+...
T Consensus 296 ~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 296 KVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp EEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred EEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 1111111 0 00 123678999999999988776 689999999743
No 220
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.45 E-value=0.0036 Score=74.42 Aligned_cols=85 Identities=14% Similarity=0.246 Sum_probs=61.4
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
..|.|..||+.+++.+.+++. ..++....++.+|.+++.++.||+ +++||+.++ ..++++.-+.
T Consensus 455 ~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~-l~a~D~~tG--------------~~lw~~~~~~ 518 (677)
T 1kb0_A 455 PFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGR-LVAYHAATG--------------EKLWEAPTGT 518 (677)
T ss_dssp CEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSS
T ss_pred CccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCc-EEEEECCCC--------------ceeeeeeCCC
Confidence 348999999999999888874 345555667788889999999987 899999987 5666665443
Q ss_pred ccccEEEEEEccCCCEE-EEEeC
Q 003308 379 TNAVIQDISFSDDSNWI-MISSS 400 (832)
Q Consensus 379 t~a~I~~IaFSpDg~~L-AsgS~ 400 (832)
. ..-.-+.|++||+.+ ++.+.
T Consensus 519 ~-~~~~p~~y~~~G~~~v~~~~G 540 (677)
T 1kb0_A 519 G-VVAAPSTYMVDGRQYVSVAVG 540 (677)
T ss_dssp C-CCSCCEEEEETTEEEEEEEEC
T ss_pred C-cccCCEEEEeCCEEEEEEecc
Confidence 1 123346678898754 44333
No 221
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.43 E-value=0.13 Score=52.06 Aligned_cols=92 Identities=12% Similarity=0.021 Sum_probs=59.1
Q ss_pred CCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 300 VGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 300 ~G~V~IwDl~s~~~l~-~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
.+.|.+||. +++... .+..+...+.+|+++++|+++++...++. |.+||. .+ . ...+.+..+
T Consensus 203 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~d~-~g------------~-~~~~~~~~~- 265 (299)
T 2z2n_A 203 GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANK-IGRLTS-NN------------I-IEEYPIQIK- 265 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEEET-TT------------E-EEEEECSSS-
T ss_pred CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCce-EEEECC-CC------------c-eEEEeCCCC-
Confidence 356778887 555332 23345567899999999997777655555 889987 33 1 222333222
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 379 t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
...+.++++ ++|++.++.+ .+.+..|+..+
T Consensus 266 -~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 266 -SAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp -SCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred -CCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 235899999 9998777655 56666666654
No 222
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.37 E-value=0.16 Score=51.47 Aligned_cols=91 Identities=10% Similarity=0.065 Sum_probs=59.4
Q ss_pred CeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCc
Q 003308 301 GMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (832)
Q Consensus 301 G~V~IwDl~s~~~l~-~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t 379 (832)
+.|.++|. +++... .+..+...+.+|+++++|.++++....+. |.+||. .+ . ...+.+..+
T Consensus 167 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g------------~-~~~~~~~~~-- 228 (300)
T 2qc5_A 167 NSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TG------------E-ISEYDIPTP-- 228 (300)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TC------------C-EEEEECSST--
T ss_pred CeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CC------------c-EEEEECCCC--
Confidence 45777776 444332 12234456889999999998777655554 788887 33 1 122222211
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003308 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (832)
Q Consensus 380 ~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl 409 (832)
...+.+|+++++|+..++...++.|.+|+.
T Consensus 229 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 229 NARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 234889999999997777666789999887
No 223
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.36 E-value=0.0013 Score=72.38 Aligned_cols=94 Identities=11% Similarity=0.005 Sum_probs=68.6
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEc---------CCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003308 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (832)
Q Consensus 302 ~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~---------dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~ 372 (832)
.|.++|..+++.+.+++.-..+ .++|||||++|+.+.. ++..|.+||..+. ..+.
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--------------~~~~ 111 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--------------LPIA 111 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--------------cEEE
Confidence 8999999999999999866556 9999999999988863 1234889999765 2222
Q ss_pred EEecc-----CccccEEEEEEccCCCEEEEEeC--CCcEEEEecCCC
Q 003308 373 RLQRG-----LTNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPL 412 (832)
Q Consensus 373 ~l~rG-----~t~a~I~~IaFSpDg~~LAsgS~--DgTVhIwdl~~~ 412 (832)
++.-+ .+...-..++|||||++|.+++. +++|.++| .+.
T Consensus 112 ~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~ 157 (373)
T 2mad_H 112 DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG 157 (373)
T ss_pred EEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC
Confidence 22111 00012457999999999999884 47899999 654
No 224
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.34 E-value=0.033 Score=58.21 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=44.8
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEE--EEEcCCEEEEE--eCCEEEEEECCCCceEEEEec
Q 003308 117 TVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAIC--QAAQVHCFDAATLEIEYAILT 173 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~s--V~~S~r~LAVa--~~~~I~vwDl~t~~~~~tl~t 173 (832)
..|+.+|++||+.+.++.++...+. +.+..+.|-+. .++.+.+||+.|++.+.++..
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~ 103 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY 103 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence 6899999999999999998776644 45545444443 478999999999998888753
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.34 E-value=0.093 Score=55.75 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=58.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCC--CC-CCCCCCccCCCCceeEEEEEecc
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII--PG-ILGTSSACDAGTSYVHLYRLQRG 377 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~--t~-~~~~~s~~~~~~~~~~l~~l~rG 377 (832)
+.|..+| +++. ..+..+......++|+|||+.|..+......|.+||+. ++ .. .....+..+. +
T Consensus 161 ~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~---------~~~~~~~~~~-~ 227 (326)
T 2ghs_A 161 GSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT---------GKAEVFIDST-G 227 (326)
T ss_dssp EEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS---------SCCEEEEECT-T
T ss_pred eEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcc---------cCceEEEECC-C
Confidence 3455566 4443 23333334567899999999776665544458999985 22 10 0112222221 1
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003308 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (832)
Q Consensus 378 ~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl 409 (832)
....+..+++++||++.++...++.|.+|+.
T Consensus 228 -~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 228 -IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp -SSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred -CCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 1123678999999998877777788999987
No 226
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.32 E-value=0.02 Score=63.54 Aligned_cols=107 Identities=8% Similarity=0.005 Sum_probs=62.1
Q ss_pred CCeEEEEECCCCcEEEE----eccCCC--CeEEEEEcCC-CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003308 300 VGMVIVRDIVSKNVIAQ----FRAHKS--PISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (832)
Q Consensus 300 ~G~V~IwDl~s~~~l~~----~~aH~~--pIs~LaFSPd-G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~ 372 (832)
.+.|..||..++..... ..++.. |...|+|+|+ |.++++-... +.|..|+.... ...+.
T Consensus 239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~-~~I~~~~~~g~-------------~~~~~ 304 (409)
T 3hrp_A 239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL-SSVYKITPDGE-------------CEWFC 304 (409)
T ss_dssp TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT-TEEEEECTTCC-------------EEEEE
T ss_pred CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC-CEEEEEecCCC-------------EEEEE
Confidence 46788888877653222 222222 2348999996 5555554444 45888876432 11110
Q ss_pred EE--eccCc--------cccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCCceeeccC
Q 003308 373 RL--QRGLT--------NAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQPT 421 (832)
Q Consensus 373 ~l--~rG~t--------~a~I~~IaFSpDg~~LAsgS-~DgTVhIwdl~~~g~~~~~~~H 421 (832)
-. ..|.. -.....|+|+|||+++++-+ ..++|++|++.. +...++.++
T Consensus 305 g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~-G~v~~~~g~ 363 (409)
T 3hrp_A 305 GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD-GYVSTVAGQ 363 (409)
T ss_dssp ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT-TEEEEEEEC
T ss_pred eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC-CEEEEEeCC
Confidence 00 00100 12378999999999888877 889999999754 334444443
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.25 E-value=0.00068 Score=75.03 Aligned_cols=94 Identities=10% Similarity=-0.020 Sum_probs=70.6
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEc---------CCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003308 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (832)
Q Consensus 302 ~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~---------dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~ 372 (832)
.|.+.|..+++.+.++..-..| .++|||||++|..+.. ++..|.+||+.+. ..+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--------------~vv~ 110 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------------LPIA 110 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--------------CEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------------CEEE
Confidence 8999999999999999866667 7999999999988862 2345999999987 3334
Q ss_pred EEecc--C---ccccEEEEEEccCCCEEEEEeC--CCcEEE--EecCC
Q 003308 373 RLQRG--L---TNAVIQDISFSDDSNWIMISSS--RGTSHL--FAINP 411 (832)
Q Consensus 373 ~l~rG--~---t~a~I~~IaFSpDg~~LAsgS~--DgTVhI--wdl~~ 411 (832)
++.-| . .......++|||||++|.++.. ..++.| +|+.+
T Consensus 111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 44322 0 0012346899999999999875 467888 88866
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.23 E-value=0.031 Score=66.53 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=41.0
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003308 346 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (832)
Q Consensus 346 I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~ 419 (832)
|..||+.++ +.++++.-+. .+..-.++..+..|.+++.||++++||..+++..-.++
T Consensus 457 l~A~D~~tG--------------~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 457 LIAWDPVKQ--------------QAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp EEEEETTTT--------------EEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCC--------------CeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 677887776 5566664432 23344677788899999999999999998865544554
No 229
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.12 E-value=0.29 Score=49.54 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=55.7
Q ss_pred CeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCc
Q 003308 301 GMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~-~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t 379 (832)
+.|.+||. +++.... +..+...+.+|+++++|+++++...++. |.+||. .+ . ...+.+..+
T Consensus 209 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g------------~-~~~~~~~~~-- 270 (300)
T 2qc5_A 209 NKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ-IGRITN-DN------------T-IQEYQLQTE-- 270 (300)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEECT-TS------------C-EEEEECCST--
T ss_pred CEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe-EEEECC-CC------------c-EEEEECCcc--
Confidence 45777776 4433222 3344566889999999997777655555 788887 33 1 222333222
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003308 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (832)
Q Consensus 380 ~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl 409 (832)
...+.+|++++||++.++.. . .|..|+.
T Consensus 271 ~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 271 NAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 23488999999998766554 4 6666654
No 230
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.11 E-value=0.047 Score=57.72 Aligned_cols=102 Identities=6% Similarity=-0.074 Sum_probs=68.6
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe---
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ--- 375 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~--- 375 (832)
.++.|.++|..+.+.+.+|+.- .+. ...+++||+.|..+...+ .|.++|..+. ..+.++.
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~~~-g~glt~Dg~~l~vs~gs~-~l~viD~~t~--------------~v~~~I~Vg~ 146 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-MKD-GWGLATDGKILYGSDGTS-ILYEIDPHTF--------------KLIKKHNVKY 146 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-SSS-CCEEEECSSSEEEECSSS-EEEEECTTTC--------------CEEEEEECEE
T ss_pred cCCEEEEEECCCCcEEEEEECC-CCC-eEEEEECCCEEEEECCCC-eEEEEECCCC--------------cEEEEEEECC
Confidence 4678999999999999999743 121 244667888887776554 5899998775 2222222
Q ss_pred ccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003308 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 376 rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~ 418 (832)
++.....++.+.|. ||+..+....+++|.+-|..+..-...+
T Consensus 147 ~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I 188 (266)
T 2iwa_A 147 NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWI 188 (266)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEE
T ss_pred CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEE
Confidence 22222247788898 8877666667889999998876544444
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.08 E-value=0.028 Score=66.86 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=41.3
Q ss_pred CEEEEEECCCCcEEEEEeCCCC-----------E-EEEEEcC-CEEEEEeCCEEEEEECCCCceEEEEec
Q 003308 117 TVVHFYSLRSQSYVHMLKFRSP-----------I-YSVRCSS-RVVAICQAAQVHCFDAATLEIEYAILT 173 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~-----------V-~sV~~S~-r~LAVa~~~~I~vwDl~t~~~~~tl~t 173 (832)
+.|.-+|++||+.+.++..... + ..+.+.. ++++.+.++.|+++|+.|++.+.+...
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 5688999999999998875321 1 1233334 444445689999999999999888765
No 232
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.08 E-value=0.0015 Score=73.63 Aligned_cols=102 Identities=8% Similarity=0.029 Sum_probs=74.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEc---------CCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~---------dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l 371 (832)
+.|.++|..+++.+.+++.-..| .|+|||||++|..+.. ++..|.++|..+. ..+
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--------------~vv 162 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--------------LPI 162 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------------CEE
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--------------cEE
Confidence 79999999999999999966667 8999999998887763 2235899999886 233
Q ss_pred EEEecc-C----ccccEEEEEEccCCCEEEEEeC--CCcEEEEecCCCCCceee
Q 003308 372 YRLQRG-L----TNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 372 ~~l~rG-~----t~a~I~~IaFSpDg~~LAsgS~--DgTVhIwdl~~~g~~~~~ 418 (832)
.++.-+ . .......++|||||++|.++.. +++|.|.|+.+..-...+
T Consensus 163 ~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I 216 (426)
T 3c75_H 163 ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRML 216 (426)
T ss_dssp EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEE
Confidence 333211 0 0011346889999999999874 578999999876443333
No 233
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.97 E-value=0.025 Score=66.94 Aligned_cols=95 Identities=6% Similarity=0.002 Sum_probs=63.0
Q ss_pred CCeEEEEECCCCcE--EEEeccCCCCeEEEEEcCCCCEEEEEEcC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003308 300 VGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (832)
Q Consensus 300 ~G~V~IwDl~s~~~--l~~~~aH~~pIs~LaFSPdG~lLATaS~d-Gt-~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~ 375 (832)
.+.|.++|+.++.. ...|..|...+. .|+++|..|+....+ |. .|.+||+..+ .+..+.
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---------------~~~~l~ 366 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK---------------RVREVA 366 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC---------------EEEEEC
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC---------------eeEEee
Confidence 35788899887654 345666766665 899999988766554 32 3778887643 222332
Q ss_pred ccCccccEEEEEEccCCCEEEEEeCC----CcEEEEecCCC
Q 003308 376 RGLTNAVIQDISFSDDSNWIMISSSR----GTSHLFAINPL 412 (832)
Q Consensus 376 rG~t~a~I~~IaFSpDg~~LAsgS~D----gTVhIwdl~~~ 412 (832)
-. ....+..+++++|++.|+....+ +++..||+...
T Consensus 367 ~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 367 LP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp CS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred cC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 11 12347788899999887766555 78999988653
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.90 E-value=0.021 Score=66.83 Aligned_cols=104 Identities=11% Similarity=-0.015 Sum_probs=67.9
Q ss_pred CeEEEEECCC--CcE-EEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCC-CCceeEEEEEec
Q 003308 301 GMVIVRDIVS--KNV-IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDA-GTSYVHLYRLQR 376 (832)
Q Consensus 301 G~V~IwDl~s--~~~-l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~-~~~~~~l~~l~r 376 (832)
+.|.|.|..+ ++. +..++.-.+ ..++.|+|||++++.++.....|.++|+.+.... ..+. ........++.-
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~~-PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~---~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV---FYENADPRSAVVAEPEL 329 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEESS-CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH---HHSCCCGGGGEEECCBC
T ss_pred CcEEEEeCcccCCceeEEEEecCCC-ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc---cccccCcccceEEEcCC
Confidence 4599999998 555 667764333 3578999999998888776666999999853000 0000 000012233333
Q ss_pred cCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 377 G~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
|. .-..++|+|||....+.-.|++|-+|++..
T Consensus 330 G~---gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 GL---GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CS---CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CC---CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 43 267899999994445566799999999976
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.90 E-value=0.00028 Score=77.30 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=44.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCC-eE-EEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003308 298 DNVGMVIVRDIVSKNVIAQFRAHKSP-IS-ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (832)
Q Consensus 298 ~~~G~V~IwDl~s~~~l~~~~aH~~p-Is-~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~ 375 (832)
..+|.|+.||..+++.+..++.+... +. +.+++ ++.+|++++.+|+ |..||..++ ..++++.
T Consensus 56 s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~-v~a~D~~tG--------------~~~w~~~ 119 (369)
T 2hz6_A 56 PNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDI-WYVIDLLTG--------------EKQQTLS 119 (369)
T ss_dssp TTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEE-EEEECCC-----------------------
T ss_pred CCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCE-EEEEECCCC--------------cEEEEec
Confidence 35678999999888877666544211 10 11112 3446777778876 899999887 4455553
Q ss_pred ccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 003308 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (832)
Q Consensus 376 rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~ 414 (832)
.+. .+.++|++..|++++.|++++.||..++..
T Consensus 120 ~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 120 SAF------ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp -------------------EEEEEEEEEEECCCSSSSSC
T ss_pred CCC------cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 221 245678999999999999999999987543
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.80 E-value=0.25 Score=52.89 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=42.1
Q ss_pred CEEEEEECCCCcEEEEEeCC----------CCEE-EEEEcC-CEEEEEeCCEEEEEECCCCceEEEEec
Q 003308 117 TVVHFYSLRSQSYVHMLKFR----------SPIY-SVRCSS-RVVAICQAAQVHCFDAATLEIEYAILT 173 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~----------s~V~-sV~~S~-r~LAVa~~~~I~vwDl~t~~~~~tl~t 173 (832)
+.|..||.++|+.+.+.... ..+. .+.... ++++...++.|++||+.|++.+++...
T Consensus 63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 68999999999999888873 3332 333444 444556678999999999998877644
No 237
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.78 E-value=0.08 Score=62.73 Aligned_cols=57 Identities=14% Similarity=-0.031 Sum_probs=41.6
Q ss_pred CEEEEEECCCCcEEEEEeCCCCE------------EEEEEc-CCEEEEEeCCEEEEEECCCCceEEEEec
Q 003308 117 TVVHFYSLRSQSYVHMLKFRSPI------------YSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILT 173 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V------------~sV~~S-~r~LAVa~~~~I~vwDl~t~~~~~tl~t 173 (832)
+.|.-+|++||+.+.++...... ..+.+. .++++.+.++.|+++|+.|++.+.+...
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 67889999999999988753211 123333 3444445689999999999999988765
No 238
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=96.76 E-value=0.22 Score=51.88 Aligned_cols=92 Identities=11% Similarity=0.030 Sum_probs=55.7
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCC-----CEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-----HNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dG-----t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~ 375 (832)
+.|..+|..+++..... +......++|+|||+.|..++... ..|.+|++... .......+.
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~------------~l~~~~~~~ 234 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG------------ALHDRRHFA 234 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT------------EEEEEEEEE
T ss_pred CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC------------CccCCeEEE
Confidence 46777887666544332 334567899999999888777652 35889988653 000001111
Q ss_pred ccCccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 003308 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (832)
Q Consensus 376 rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl 409 (832)
.. .......|++++||++.++ +.+ .|++|+.
T Consensus 235 ~~-~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~ 265 (305)
T 3dr2_A 235 SV-PDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS 265 (305)
T ss_dssp CC-SSSCCCSEEECTTSCEEEC-CSS-EEEEECT
T ss_pred EC-CCCCCCeEEECCCCCEEEe-cCC-cEEEECC
Confidence 10 1122457899999995544 444 4888876
No 239
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.57 E-value=0.08 Score=56.03 Aligned_cols=103 Identities=8% Similarity=-0.106 Sum_probs=68.4
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE-ecc
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL-QRG 377 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l-~rG 377 (832)
.++.+.+||..+.+.+.+|+.-... ..+.+||+.|..++..+ .|.++|..+. ........ .+|
T Consensus 114 ~~~~v~V~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~vSdGs~-~l~~iDp~T~------------~v~~~I~V~~~g 177 (268)
T 3nok_A 114 TEGLLFTWSGMPPQRERTTRYSGEG---WGLCYWNGKLVRSDGGT-MLTFHEPDGF------------ALVGAVQVKLRG 177 (268)
T ss_dssp SSCEEEEEETTTTEEEEEEECSSCC---CCEEEETTEEEEECSSS-EEEEECTTTC------------CEEEEEECEETT
T ss_pred cCCEEEEEECCcCcEEEEEeCCCce---eEEecCCCEEEEECCCC-EEEEEcCCCC------------eEEEEEEeCCCC
Confidence 4578999999999999999853332 23346788888777554 4889998775 11111122 233
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003308 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 378 ~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~ 418 (832)
.....++.+.|. ||+..|..-.+.+|.+-|..++.-...+
T Consensus 178 ~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~I 217 (268)
T 3nok_A 178 QPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVI 217 (268)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEE
T ss_pred cccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEE
Confidence 222246788887 8887777767889998888775444444
No 240
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.54 E-value=0.16 Score=58.98 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=34.8
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003308 346 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 346 I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~ 418 (832)
|..||+.++ +.++++.-+. .+....+...+..|..++.||+++.||..++...-.+
T Consensus 446 l~a~D~~tG--------------~~~W~~~~~~---~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 446 IRAFDLTTG--------------KAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp EEEECTTTC--------------CEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCC--------------CEEEEecCCC---CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 666776665 4455554322 1233334445667778999999999999875444344
No 241
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.47 E-value=0.073 Score=56.15 Aligned_cols=103 Identities=8% Similarity=0.011 Sum_probs=67.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE-ecc
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL-QRG 377 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l-~rG 377 (832)
.++.+.+||..+.+.+.+|+.-... ..+++||+.|..++..+ .|.++|..+. ........ ..|
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~-~i~~iDp~T~------------~v~~~I~V~~~g 168 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTP-VLRFLDPESL------------TPVRTITVTAHG 168 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSS-EEEEECTTTC------------SEEEEEECEETT
T ss_pred eCCEEEEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCC-eEEEEcCCCC------------eEEEEEEeccCC
Confidence 4578999999999999999854332 34446788777766544 4888888775 11111122 122
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003308 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 378 ~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~ 418 (832)
.....++.+.|. ||+..|..-.+.+|.+-|..++.-...+
T Consensus 169 ~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 169 EELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGII 208 (262)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEE
T ss_pred ccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 222236678887 8887777777889999888775444444
No 242
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.23 E-value=0.02 Score=67.78 Aligned_cols=109 Identities=9% Similarity=0.115 Sum_probs=69.9
Q ss_pred CCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEEcCC------------CEEEEEeCCCCCCCCCCccCCC
Q 003308 299 NVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQG------------HNINIFKIIPGILGTSSACDAG 365 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~-~~aH~~pIs~LaFSPdG~lLATaS~dG------------t~I~Iwdi~t~~~~~~s~~~~~ 365 (832)
....|+|||+.+++.+.. +... ....++|+ ||+.|+.++.+. ..|.+|++.+..
T Consensus 153 ~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~---------- 219 (693)
T 3iuj_A 153 DWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQ---------- 219 (693)
T ss_dssp CEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCG----------
T ss_pred ceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCc----------
Confidence 346899999999986543 2211 12567899 999999888773 347888887641
Q ss_pred CceeEEEEEeccCccccEEEEEEccCCCEEEEEeCC----CcEEEEecCCCC-CceeeccC
Q 003308 366 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR----GTSHLFAINPLG-GSVNFQPT 421 (832)
Q Consensus 366 ~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~D----gTVhIwdl~~~g-~~~~~~~H 421 (832)
.....++... +.....+..++|||||++|+..+.+ ..|+++++.... ....+..+
T Consensus 220 ~~~~~v~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 220 EDDRLVFGAI-PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp GGCEEEESCS-GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred ccceEEEecC-CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 0113444321 1012236789999999999766543 478899987654 34455444
No 243
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.22 E-value=0.38 Score=50.08 Aligned_cols=101 Identities=8% Similarity=-0.039 Sum_probs=66.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe---
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ--- 375 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~--- 375 (832)
.++.+.+||..+.+.+.+|+.-..+ ..+.+||+.|..+...++ |.++|..+. ..+.++.
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~-l~~iDp~t~--------------~~~~~I~V~~ 144 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAV-IRKLDPDTL--------------QQVGSIKVTA 144 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSE-EEEECTTTC--------------CEEEEEECEE
T ss_pred eCCEEEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCe-EEEEeCCCC--------------eEEEEEEEcc
Confidence 4578999999999999999854444 233467777776665554 889998775 2222222
Q ss_pred ccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003308 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 376 rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~ 418 (832)
+|.....++.+.|. +|+..|..-.+..|.+-|..++.-...+
T Consensus 145 ~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 145 GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWI 186 (243)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEE
T ss_pred CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEE
Confidence 22222236677776 7887777767788888888775544444
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.18 E-value=0.17 Score=59.79 Aligned_cols=85 Identities=13% Similarity=0.229 Sum_probs=58.1
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
.+|.|..||+.+++.+.+++.+. ++....+...|.+++.++.||. +++||..++ +.+++++-+.
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~-l~a~d~~tG--------------~~l~~~~~~~ 499 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQ-MHAYSADKG--------------EALWQFEAQS 499 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSS
T ss_pred ccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCccc-chhhhhhcC--------------hhheEecCCC
Confidence 45899999999999988877543 3333445567888889999987 899999987 5566654331
Q ss_pred ccccEEEEEEccCCC-EEEEEeC
Q 003308 379 TNAVIQDISFSDDSN-WIMISSS 400 (832)
Q Consensus 379 t~a~I~~IaFSpDg~-~LAsgS~ 400 (832)
. ..-.-+.+..||+ ++++++-
T Consensus 500 ~-~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 500 G-IVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp C-CCSCCEEEEETTEEEEEEEEC
T ss_pred C-cccCceEEEECCEEEEEEEec
Confidence 1 1112355667887 5666553
No 245
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.16 E-value=0.3 Score=50.51 Aligned_cols=91 Identities=12% Similarity=0.154 Sum_probs=54.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCcc
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~ 380 (832)
|.|..+|. +++.+..+......+.++.++++|.+. .++.+|. |..||. ++ ..++.+.-+ .
T Consensus 235 ~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~gg-l~~~d~-~g--------------~~~~~~~~~--~ 294 (330)
T 3hxj_A 235 GHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIY-FGSYDGH-LYAINP-DG--------------TEKWNFETG--S 294 (330)
T ss_dssp TEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEE-EECTTCE-EEEECT-TS--------------CEEEEEECS--S
T ss_pred CeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEE-EecCCCC-EEEECC-CC--------------cEEEEEEcC--C
Confidence 44555553 444555555444445567778888755 4556665 677874 43 233443322 2
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003308 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 381 a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
..+.++++.++|++ ..++.+|.+++......
T Consensus 295 ~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 295 WIIATPVIDENGTI-YFGTRNGKFYALFNLEH 325 (330)
T ss_dssp CCCSCCEECTTCCE-EEECTTSCEEEEEC---
T ss_pred ccccceEEcCCCEE-EEEcCCCeEEEEecccc
Confidence 34677888888875 46889999999887653
No 246
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.11 E-value=0.98 Score=49.58 Aligned_cols=100 Identities=18% Similarity=0.243 Sum_probs=63.6
Q ss_pred CCeEEEEEC-------CCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 003308 300 VGMVIVRDI-------VSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (832)
Q Consensus 300 ~G~V~IwDl-------~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~ 372 (832)
+|.+..|++ .+.+.+++|.-- +.+-.+.+++....|..+-.+ .-|..++..+. . ......+.
T Consensus 152 ~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~--~-------~~~~~~v~ 220 (355)
T 3amr_A 152 EGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEED-EAIWKFSAEPD--G-------GSNGTVID 220 (355)
T ss_dssp SSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETT-TEEEEEECSTT--S-------CSCCEEEE
T ss_pred CCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEeccc-ceEEEEeCCcC--C-------CCCceEEE
Confidence 467777776 234677888754 467788899988888888887 32444444332 0 00113333
Q ss_pred EEeccCccccEEEEEE--ccCCC-EEEEEe-CCCcEEEEecC
Q 003308 373 RLQRGLTNAVIQDISF--SDDSN-WIMISS-SRGTSHLFAIN 410 (832)
Q Consensus 373 ~l~rG~t~a~I~~IaF--SpDg~-~LAsgS-~DgTVhIwdl~ 410 (832)
.+.-+.-.+.+..|++ .+|++ ||.++| .+.+.+|||..
T Consensus 221 ~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 221 RADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 3322333456888888 67777 666666 57799999996
No 247
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=95.94 E-value=0.066 Score=57.28 Aligned_cols=109 Identities=13% Similarity=0.217 Sum_probs=62.8
Q ss_pred CCeEEEEECCCCcEEEEeccC------CCCeEEEEEcCC-CCEEEEEE---cCCCEEEEEeCCCCCCCCCC----ccCCC
Q 003308 300 VGMVIVRDIVSKNVIAQFRAH------KSPISALCFDPS-GILLVTAS---VQGHNINIFKIIPGILGTSS----ACDAG 365 (832)
Q Consensus 300 ~G~V~IwDl~s~~~l~~~~aH------~~pIs~LaFSPd-G~lLATaS---~dGt~I~Iwdi~t~~~~~~s----~~~~~ 365 (832)
++.|.+||+.+++.+..+..+ ...+..|+|+|+ |.++++-+ .++. |.+||+.++...... .....
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~-i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA-LIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE-EEEEETTTCCEEEECTTCTTTSCC
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe-EEEEECCCCCEEEEecCCCccccc
Confidence 457999999999877777532 234689999986 45555554 4554 889998765210000 00000
Q ss_pred C-----ceeEEEEEec-cC---ccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 003308 366 T-----SYVHLYRLQR-GL---TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (832)
Q Consensus 366 ~-----~~~~l~~l~r-G~---t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~ 410 (832)
. ....++.... |. ....+..|+|||||++|..+..+++ +||.+.
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~ 223 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIK 223 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEE
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEE
Confidence 0 0001100000 00 0012688999999999998887775 566654
No 248
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.84 E-value=0.27 Score=57.31 Aligned_cols=83 Identities=25% Similarity=0.417 Sum_probs=56.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
..|.|.-||+.+++.+-+++.+. ++..-.+...|.+++.++.||+ ++.||..++ +.+++++-+.
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~-l~A~D~~tG--------------~~lW~~~~~~ 527 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGY-FKAFDAKSG--------------KELWKFQTGS 527 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSS
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCc-EEEEECCCC--------------CEEEEecCCC
Confidence 46899999999999988776442 2222122234667778999987 899999987 6777775432
Q ss_pred ccccEE--EEEEccCCC-EEEEEeC
Q 003308 379 TNAVIQ--DISFSDDSN-WIMISSS 400 (832)
Q Consensus 379 t~a~I~--~IaFSpDg~-~LAsgS~ 400 (832)
.|. -+.|..||+ ||++.+-
T Consensus 528 ---g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 528 ---GIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp ---CCCSCCEEEEETTEEEEEEEEC
T ss_pred ---CcccCceEEEECCEEEEEEEcc
Confidence 232 367778887 5555443
No 249
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=95.66 E-value=0.062 Score=56.18 Aligned_cols=84 Identities=11% Similarity=-0.063 Sum_probs=55.6
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecc
Q 003308 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (832)
Q Consensus 298 ~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG 377 (832)
...+.|..||. +++ +..+..+...+..++|+|+|+++++...++. |.+|+.. + ....+.....+
T Consensus 64 ~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~-v~~~~~~-g------------~~~~~~~~~~~ 127 (305)
T 3dr2_A 64 LVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRA-ITRSDAD-G------------QAHLLVGRYAG 127 (305)
T ss_dssp TTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTE-EEEECTT-S------------CEEEEECEETT
T ss_pred CCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCE-EEEECCC-C------------CEEEEEeccCC
Confidence 34578999998 444 4566666778899999999997766544444 7888864 3 12222222222
Q ss_pred CccccEEEEEEccCCCEEEE
Q 003308 378 LTNAVIQDISFSDDSNWIMI 397 (832)
Q Consensus 378 ~t~a~I~~IaFSpDg~~LAs 397 (832)
.....+.+++|+|||++.++
T Consensus 128 ~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 128 KRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp EECSCCCCEEECTTSCEEEE
T ss_pred CccCCCCCEEECCCCCEEEe
Confidence 21223778999999998886
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.40 E-value=1.3 Score=52.00 Aligned_cols=29 Identities=7% Similarity=-0.015 Sum_probs=22.0
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003308 390 DDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 390 pDg~~LAsgS~DgTVhIwdl~~~g~~~~~ 418 (832)
..+..|..++.||.++.||..++...-.+
T Consensus 482 tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 482 TAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 35667778999999999999886543333
No 251
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=95.23 E-value=0.24 Score=57.95 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=57.0
Q ss_pred cccCCCCeEEEEECCCCc------------EEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCcc
Q 003308 295 PDADNVGMVIVRDIVSKN------------VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC 362 (832)
Q Consensus 295 ~s~~~~G~V~IwDl~s~~------------~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~ 362 (832)
++...+.+|.++|+.+.+ .+.+++.-.+ -..++|+|||....+.-.+++ |-+||+..... ..
T Consensus 293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g-P~h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~----~~ 366 (595)
T 1fwx_A 293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG-PLHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIR----AY 366 (595)
T ss_dssp EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC-EEEEEECTTSEEEEEETTTTE-EEEEEHHHHHH----HH
T ss_pred EeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC-cceEEECCCCeEEEEEecCCc-EEEEEhhHhhh----hh
Confidence 344556789999998653 4556554444 467899999943344445554 88999876200 00
Q ss_pred CCCCceeEEEEEeccCccccE---EEEEEccCCCEEEEEeC
Q 003308 363 DAGTSYVHLYRLQRGLTNAVI---QDISFSDDSNWIMISSS 400 (832)
Q Consensus 363 ~~~~~~~~l~~l~rG~t~a~I---~~IaFSpDg~~LAsgS~ 400 (832)
..+.....+.++.-+..+... ..++++|||+||.++..
T Consensus 367 ~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 367 AGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp HTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred cccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 000011234455443321111 23456899999988764
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.61 E-value=3.8 Score=47.54 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=40.8
Q ss_pred EEEEEECCCCcEEEEEeCCCCE----------EEEEEc-CCEEEEEeCCEEEEEECCCCceEEEEec
Q 003308 118 VVHFYSLRSQSYVHMLKFRSPI----------YSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILT 173 (832)
Q Consensus 118 tVrlWDL~Tg~~V~tL~f~s~V----------~sV~~S-~r~LAVa~~~~I~vwDl~t~~~~~tl~t 173 (832)
.|.-+|++||+.+.++....+. ..+.+. .++++.+.++.|+.+|+.|++.+.+...
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 3788899999999988764321 223333 4455556789999999999999888754
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=93.84 E-value=3.4 Score=47.80 Aligned_cols=57 Identities=12% Similarity=0.080 Sum_probs=40.7
Q ss_pred CEEEEEEC-CCCcEEEEEeCCCC--E----------EEEEEcCCEE-EEEeCCEEEEEECCCCceEEEEec
Q 003308 117 TVVHFYSL-RSQSYVHMLKFRSP--I----------YSVRCSSRVV-AICQAAQVHCFDAATLEIEYAILT 173 (832)
Q Consensus 117 ~tVrlWDL-~Tg~~V~tL~f~s~--V----------~sV~~S~r~L-AVa~~~~I~vwDl~t~~~~~tl~t 173 (832)
+.|.-+|+ +||+.+.+...... + ..+.+....| +...++.++++|+.|++.+.+...
T Consensus 73 ~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 143 (571)
T 2ad6_A 73 NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEV 143 (571)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEEecC
Confidence 56888899 99999998876431 0 1233444444 445688999999999999887754
No 254
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.49 E-value=4.6 Score=47.20 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=40.8
Q ss_pred CEEEEEEC-CCCcEEEEEeCCCC------------EEEEEE--c-CC----EEEEEeCCEEEEEECCCCceEEEEec
Q 003308 117 TVVHFYSL-RSQSYVHMLKFRSP------------IYSVRC--S-SR----VVAICQAAQVHCFDAATLEIEYAILT 173 (832)
Q Consensus 117 ~tVrlWDL-~Tg~~V~tL~f~s~------------V~sV~~--S-~r----~LAVa~~~~I~vwDl~t~~~~~tl~t 173 (832)
+.|.-+|+ +||+.+.+...... ...+.+ . .+ +++...++.++++|+.|++.+.+...
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~ 149 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN 149 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC
Confidence 56778899 99999998876432 122344 2 33 55556789999999999999887654
No 255
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=92.57 E-value=2.3 Score=44.45 Aligned_cols=82 Identities=12% Similarity=0.197 Sum_probs=53.4
Q ss_pred EeccCCCCeEEEEEcCCCCEEEE-EEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCE
Q 003308 316 QFRAHKSPISALCFDPSGILLVT-ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 394 (832)
Q Consensus 316 ~~~aH~~pIs~LaFSPdG~lLAT-aS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~ 394 (832)
.+.+-...++.|+|+|++..|.+ ...++. |...|.. + .......+ .|. ...-.|++.+++.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~-I~~ld~~-g------------~v~~~i~l-~g~--~D~EGIa~~~~g~~ 83 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAA-IVEMTTN-G------------DLIRTIPL-DFV--KDLETIEYIGDNQF 83 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEE-EEEEETT-C------------CEEEEEEC-SSC--SSEEEEEECSTTEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCe-EEEEeCC-C------------CEEEEEec-CCC--CChHHeEEeCCCEE
Confidence 34444567999999998765555 555544 5556654 3 12222222 232 35889999999987
Q ss_pred EEEEeCCCcEEEEecCCCCC
Q 003308 395 IMISSSRGTSHLFAINPLGG 414 (832)
Q Consensus 395 LAsgS~DgTVhIwdl~~~g~ 414 (832)
+++.-.++.+.+|++...+.
T Consensus 84 ~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 84 VISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp EEEETTTTEEEEEEECTTCC
T ss_pred EEEECCCCcEEEEEcCCCCe
Confidence 66655678899999987654
No 256
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=92.24 E-value=10 Score=38.05 Aligned_cols=78 Identities=10% Similarity=0.047 Sum_probs=47.4
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEe-C
Q 003308 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-S 400 (832)
Q Consensus 322 ~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS-~ 400 (832)
..-..|+|+|++..|..+......|.++|.... .. ..+..+. .....|++. +.+|..+. .
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~--------------~~-~~~~~~~--~~P~gi~~d--~~~lyva~~~ 227 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP--------------GR-RKVLEGL--QYPFAVTSY--GKNLYYTDWK 227 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE--------------EE-EEEEECC--CSEEEEEEE--TTEEEEEETT
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC--------------ce-EEEecCC--CCceEEEEe--CCEEEEEECC
Confidence 345789999998888777776666888887542 11 1111221 124566654 45555544 5
Q ss_pred CCcEEEEecCCCCCceee
Q 003308 401 RGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 401 DgTVhIwdl~~~g~~~~~ 418 (832)
.+.|.+++...+.....+
T Consensus 228 ~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 228 TNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp TTEEEEEETTTTEEEEEE
T ss_pred CCeEEEEeCCCCCceEEE
Confidence 678988888765433344
No 257
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=91.91 E-value=20 Score=40.60 Aligned_cols=203 Identities=12% Similarity=0.131 Sum_probs=116.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEE-cCCEEEEEeCCEEEEEECCCC-ceEEEEecCCCccCCCCCCCCCcccceee
Q 003308 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAATL-EIEYAILTNPIVMGHPSAGGIGIGYGPLA 194 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~-S~r~LAVa~~~~I~vwDl~t~-~~~~tl~t~~~~~~~p~~~~~~~~~~p~A 194 (832)
++++++|+.+.+.+++..++..|.-=+| +.+.|+...+..||-|++... .....+.-|++- +
T Consensus 86 ~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L----------------~ 149 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSL----------------A 149 (494)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGG----------------T
T ss_pred CeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhc----------------c
Confidence 7899999999999999999887654455 789999999999999998642 222333333211 0
Q ss_pred eccceEEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccceeceeeeccCccccccccccccccCCCc
Q 003308 195 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ 274 (832)
Q Consensus 195 lg~r~LAya~~~~~~s~~Grvsp~~l~~s~~~s~~~s~g~~V~~~A~~ssk~lasGi~~lGd~g~~~ls~y~~~~~p~~~ 274 (832)
+.+.+.|..++- .+.. +..||..
T Consensus 150 -~~QIInY~~d~~-------------------------~kW~----------~l~GI~~--------------------- 172 (494)
T 1bpo_A 150 -GCQIINYRTDAK-------------------------QKWL----------LLTGISA--------------------- 172 (494)
T ss_dssp -TCEEEEEEECTT-------------------------SSEE----------EEEEEEE---------------------
T ss_pred -cceEEEEEECCC-------------------------CCeE----------EEEeecc---------------------
Confidence 224455543211 1111 0012100
Q ss_pred CccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC---CCEEEEEEcC--CCEEEEE
Q 003308 275 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS---GILLVTASVQ--GHNINIF 349 (832)
Q Consensus 275 ~si~sa~~~~~~~g~~~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPd---G~lLATaS~d--Gt~I~Iw 349 (832)
.++.-.|.+.+|..+.+. -..+++|......+.+.-+ .++++-|... |..++|.
T Consensus 173 --------------------~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~ 231 (494)
T 1bpo_A 173 --------------------QQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII 231 (494)
T ss_dssp --------------------ETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEE
T ss_pred --------------------cCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEE
Confidence 001124789999887653 3567788654444443321 2355555543 3458999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEEeccCcc-cc-EEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 003308 350 KIIPGILGTSSACDAGTSYVHLYRLQRGLTN-AV-IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (832)
Q Consensus 350 di~t~~~~~~s~~~~~~~~~~l~~l~rG~t~-a~-I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~~ 419 (832)
++.....+... . . .+...+..-... .+ -..+..|+.-..+..-+.-|-+|+||++++.....-+
T Consensus 232 Ei~~~~~~~~~-f----~-kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 232 EVGTPPTGNQP-F----P-KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp ECSCCCTTCCC-C----C-CEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EcCCCccCCCC-c----c-ceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence 88542111110 0 1 112222111000 01 3467788877788899999999999999876654433
No 258
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=91.69 E-value=0.55 Score=56.18 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=58.4
Q ss_pred CeEEEEECCCC-cEEE-EeccCCCCeEEEEEcCCCCEEEEEEcCC----CEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003308 301 GMVIVRDIVSK-NVIA-QFRAHKSPISALCFDPSGILLVTASVQG----HNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (832)
Q Consensus 301 G~V~IwDl~s~-~~l~-~~~aH~~pIs~LaFSPdG~lLATaS~dG----t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l 374 (832)
..|+++|+.++ +.+. .+.. ....++|+|||+.|+..+.+. ..|.++++.++. .....++..
T Consensus 201 ~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~----------~~~~lv~~~ 267 (751)
T 2xe4_A 201 YTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ----------SEDVCLYEE 267 (751)
T ss_dssp EEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCG----------GGCEEEEEC
T ss_pred EEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCc----------hhcEEEEec
Confidence 46999999998 6321 1211 134688999999888776652 235566665430 011334432
Q ss_pred eccCccccEEEEEEccCCCEEEEEeCCC---cEEEEecCCC
Q 003308 375 QRGLTNAVIQDISFSDDSNWIMISSSRG---TSHLFAINPL 412 (832)
Q Consensus 375 ~rG~t~a~I~~IaFSpDg~~LAsgS~Dg---TVhIwdl~~~ 412 (832)
. ......++.|||||++|+..+.++ .|.++|+...
T Consensus 268 --~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 268 --H-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp --C-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred --C-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 1 112356789999999998876432 4666777654
No 259
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=91.41 E-value=16 Score=38.38 Aligned_cols=94 Identities=16% Similarity=0.045 Sum_probs=54.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCc
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dG-t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t 379 (832)
+.|.+.|+........+.........|+++|++..|..++... ..|..+++.-. ... .+... .
T Consensus 99 ~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-------------~~~--~~~~~-~ 162 (316)
T 1ijq_A 99 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------DIY--SLVTE-N 162 (316)
T ss_dssp TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------CEE--EEECS-S
T ss_pred CEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-------------CeE--EEEEC-C
Confidence 4677777765433333333334568999999666555555432 33666665321 122 12111 1
Q ss_pred cccEEEEEEccCCCEEEEEe-CCCcEEEEecC
Q 003308 380 NAVIQDISFSDDSNWIMISS-SRGTSHLFAIN 410 (832)
Q Consensus 380 ~a~I~~IaFSpDg~~LAsgS-~DgTVhIwdl~ 410 (832)
-.....|+|+++++.|..+. ..++|..+++.
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 12478999999877765554 45689999986
No 260
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=91.06 E-value=3.8 Score=41.41 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=60.1
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
..+.|.++|+.+......+.........|+|+|++..|..++.....|.++++... ....+ ...+.
T Consensus 56 ~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~------------~~~~~--~~~~~ 121 (267)
T 1npe_A 56 SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT------------QRRVL--FDTGL 121 (267)
T ss_dssp TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEE--ECSSC
T ss_pred CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC------------CEEEE--EECCC
Confidence 35689999987765443343333456899999987766666665555888887532 11121 11221
Q ss_pred ccccEEEEEEccCCCEEEEEeC---CCcEEEEecC
Q 003308 379 TNAVIQDISFSDDSNWIMISSS---RGTSHLFAIN 410 (832)
Q Consensus 379 t~a~I~~IaFSpDg~~LAsgS~---DgTVhIwdl~ 410 (832)
.....|+|+|++.+|..+.. .++|.++++.
T Consensus 122 --~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 122 --VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp --SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred --CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 23689999997666655544 3577777764
No 261
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=89.73 E-value=26 Score=38.23 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=42.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEE-cCCEEEEEeCCEEEEEECCC
Q 003308 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAAT 164 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~-S~r~LAVa~~~~I~vwDl~t 164 (832)
++++++|+.+.+.+++..++..|.-=+| +.+.|+...+..|+-|++..
T Consensus 87 ~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~ 135 (365)
T 2xzh_A 87 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 135 (365)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESST
T ss_pred CeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccC
Confidence 7899999999999999999888766666 78999999999999999874
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=89.53 E-value=2.4 Score=44.10 Aligned_cols=81 Identities=12% Similarity=0.193 Sum_probs=50.6
Q ss_pred CCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEc
Q 003308 310 SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS 389 (832)
Q Consensus 310 s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFS 389 (832)
..+.+.+|... .....++|+|+|+++++-...++ |..||.... ......+ + .....|+|+
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~-I~~~d~~g~-------------~~~~~~~--~---~~p~gia~~ 80 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGE-IVSITPDGN-------------QQIHATV--E---GKVSGLAFT 80 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTE-EEEECTTCC-------------EEEEEEC--S---SEEEEEEEC
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCe-EEEECCCCc-------------eEEEEeC--C---CCceeEEEc
Confidence 34566777654 34678999999997777555555 677765432 1222221 1 248899999
Q ss_pred cCCCEEEEEeCCCc--EEEEecC
Q 003308 390 DDSNWIMISSSRGT--SHLFAIN 410 (832)
Q Consensus 390 pDg~~LAsgS~DgT--VhIwdl~ 410 (832)
+||+++++...... |..++..
T Consensus 81 ~dG~l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 81 SNGDLVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp TTSCEEEEEECTTSCEEEEEECT
T ss_pred CCCcEEEEeccCCcceEEEEcCC
Confidence 99997766554333 5555543
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=89.12 E-value=28 Score=37.69 Aligned_cols=74 Identities=5% Similarity=-0.044 Sum_probs=43.7
Q ss_pred CCeEEEEEcCCCCEEEEEEcCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEe-
Q 003308 322 SPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS- 399 (832)
Q Consensus 322 ~pIs~LaFSPdG~lLATaS~dG-t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS- 399 (832)
..-..|+++|++.+|.-+.... ..|..++.... ....+ ...+. .....|+|+|++..|..+-
T Consensus 202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~------------~~~~~--~~~~~--~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS------------GRRII--ADTHL--FWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC------------SCEEE--ECSSC--SCEEEEEEEGGGTEEEEEET
T ss_pred CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC------------CcEEE--EECCC--CCeeeEEEeCCCCEEEEEEC
Confidence 4458899999776666555543 44566655321 11111 11222 2368999998777665554
Q ss_pred CCCcEEEEecCC
Q 003308 400 SRGTSHLFAINP 411 (832)
Q Consensus 400 ~DgTVhIwdl~~ 411 (832)
..+.|..+++..
T Consensus 266 ~~~~I~~~d~dG 277 (386)
T 3v65_B 266 KHHVIERANLDG 277 (386)
T ss_dssp TTTEEEEECTTS
T ss_pred CCCEEEEEeCCC
Confidence 456788888753
No 264
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=89.11 E-value=2.7 Score=47.37 Aligned_cols=108 Identities=11% Similarity=0.141 Sum_probs=69.0
Q ss_pred CCeEEEEECCCCcEEEEeccC----CCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003308 300 VGMVIVRDIVSKNVIAQFRAH----KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (832)
Q Consensus 300 ~G~V~IwDl~s~~~l~~~~aH----~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~ 375 (832)
+..||.-++.....-+.++.- -..|..|..||+|++||..+.. .|.|-.+..+......... . .....+.++
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~~~~~~~~-~-~~~q~~ty~ 115 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYSNVEDVSI-Q-DAFQIFHYS 115 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS--EEEEEECCTTCSCCCCHHH-H-HTTEEEEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC--eEEEEEecCccccCccccc-c-cccceeEEE
Confidence 457887777744333334322 2257889999999999998776 3899998744211110000 0 011223333
Q ss_pred ccC----ccccEEEEEEccC---CCEEEEEeCCCcEEEEecCC
Q 003308 376 RGL----TNAVIQDISFSDD---SNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 376 rG~----t~a~I~~IaFSpD---g~~LAsgS~DgTVhIwdl~~ 411 (832)
-|. ....|..+-|.|- +..|++-..|++|++||+..
T Consensus 116 l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 116 IDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp GGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 332 1356999999984 56799999999999999986
No 265
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=87.15 E-value=20 Score=45.17 Aligned_cols=95 Identities=9% Similarity=0.135 Sum_probs=60.9
Q ss_pred CeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCc
Q 003308 301 GMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (832)
Q Consensus 301 G~V~IwDl~s~~~l~-~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t 379 (832)
.+|+|||+...+.+. .-..+. .|..+...-.|.+++.|+.... |.++..+.. ...+..+-|...
T Consensus 904 ~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~-------------~~~L~~~a~D~~ 968 (1158)
T 3ei3_A 904 STVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRS-VLLLAYKPM-------------EGNFEEIARDFN 968 (1158)
T ss_dssp TEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBC-EEEEEEETT-------------TTEEEEEEECCS
T ss_pred CEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEEhhhe-EEEEEEEcC-------------CCeEEEEEeecc
Confidence 478999988765443 111121 2333333345788888887754 555544332 125566667766
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 380 ~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
+..+.+++|=.++ .++.+-.+|.++++...+
T Consensus 969 ~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 969 PNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred cccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 6678999997665 566788999999999876
No 266
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=86.68 E-value=1.6 Score=44.85 Aligned_cols=89 Identities=12% Similarity=0.158 Sum_probs=63.5
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003308 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (832)
Q Consensus 297 ~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~r 376 (832)
+..++.|..+|.. ++.+..+......+.++.++++|.+++.. +. |..|| .++ ..+++...
T Consensus 153 gt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~-l~~~d-~~g--------------~~~~~~~~ 212 (330)
T 3hxj_A 153 GSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DK-VYAIN-PDG--------------TEKWNFYA 212 (330)
T ss_dssp ECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SS-EEEEC-TTS--------------CEEEEECC
T ss_pred EcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CE-EEEEC-CCC--------------cEEEEEcc
Confidence 3456889999998 88877777666678889999999977665 55 77888 544 34445432
Q ss_pred cCccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 003308 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (832)
Q Consensus 377 G~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwd 408 (832)
+ ...+.++++.+||+. .+++.++.+..|+
T Consensus 213 ~--~~~~~~~~~~~~g~l-~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 213 G--YWTVTRPAISEDGTI-YVTSLDGHLYAIN 241 (330)
T ss_dssp S--SCCCSCCEECTTSCE-EEEETTTEEEEEC
T ss_pred C--CcceeceEECCCCeE-EEEcCCCeEEEEC
Confidence 2 234778889988865 4566778887775
No 267
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=85.17 E-value=7.2 Score=40.57 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=51.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
..|.|..||..+++....... ......|+|+|||++|..+......|.+|++..... +....+..+
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~---------~~~~~~~~~---- 228 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK---------GTAEVLVKI---- 228 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT---------TCEEEEEEC----
T ss_pred CCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC---------CccceEEeC----
Confidence 457788899877764322221 122356999999997766655434588888764210 011222221
Q ss_pred ccccEEEEEEccCCCEEEEEeC
Q 003308 379 TNAVIQDISFSDDSNWIMISSS 400 (832)
Q Consensus 379 t~a~I~~IaFSpDg~~LAsgS~ 400 (832)
.. ...|++.++|++.++...
T Consensus 229 -~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 229 -PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp -SS-EEEEEECTTSCEEEEEEE
T ss_pred -CC-CCCeEECCCCCEEEEecC
Confidence 12 677999999987666544
No 268
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=85.09 E-value=3.9 Score=42.65 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=54.7
Q ss_pred eEEEEECCCCcEEEEec----c-CCCCeEEEEEcC-CCCEEEEEEc-----------------CCCEEEEEeCCCCCCCC
Q 003308 302 MVIVRDIVSKNVIAQFR----A-HKSPISALCFDP-SGILLVTASV-----------------QGHNINIFKIIPGILGT 358 (832)
Q Consensus 302 ~V~IwDl~s~~~l~~~~----a-H~~pIs~LaFSP-dG~lLATaS~-----------------dGt~I~Iwdi~t~~~~~ 358 (832)
.|.++|..+++. ..+. + .......|+++| +|.+.++-.. +|. |..||..++
T Consensus 102 ~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~-v~~~d~~~~---- 175 (322)
T 2fp8_A 102 HLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR-LIKYDPSTK---- 175 (322)
T ss_dssp EEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE-EEEEETTTT----
T ss_pred CEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce-EEEEeCCCC----
Confidence 377778765532 2221 1 112467899999 9998877543 233 566665543
Q ss_pred CCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEE-eCCCcEEEEecCC
Q 003308 359 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINP 411 (832)
Q Consensus 359 ~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsg-S~DgTVhIwdl~~ 411 (832)
.... +..+. .....|+|+|||++|.++ +..+.|.+|++..
T Consensus 176 --------~~~~---~~~~~--~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 176 --------ETTL---LLKEL--HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp --------EEEE---EEEEE--SCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred --------EEEE---eccCC--ccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 1111 11111 124679999999976655 5568999999864
No 269
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=85.03 E-value=68 Score=37.87 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=58.0
Q ss_pred CCCeEEEEECCCCcEEEEecc--------CCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 003308 299 NVGMVIVRDIVSKNVIAQFRA--------HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~a--------H~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~ 370 (832)
..|-|..||..+++....... ....|.+|+.+++|.+|-.|..++. |.+||..++ ...
T Consensus 375 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~G-l~~~d~~~~------------~~~- 440 (795)
T 4a2l_A 375 NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGG-LSILHRNSG------------QVE- 440 (795)
T ss_dssp SSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTE-EEEEETTTC------------CEE-
T ss_pred CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCc-eeEEeCCCC------------cEE-
Confidence 344577888877654322211 1357999999999994445555444 788988765 111
Q ss_pred EEEEec---cCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 371 LYRLQR---GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 371 l~~l~r---G~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
.+.. +.....|.+|+..++|++.+.. .+ -+.+|+..+
T Consensus 441 --~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~ 480 (795)
T 4a2l_A 441 --NFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQ 480 (795)
T ss_dssp --EECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTT
T ss_pred --EeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCC
Confidence 2211 1122359999999998855443 44 577787654
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=84.71 E-value=45 Score=35.50 Aligned_cols=94 Identities=5% Similarity=-0.046 Sum_probs=52.7
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEE-eccC
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRL-QRGL 378 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dG-t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l-~rG~ 378 (832)
+.|.+.|+........+......-..|+++|++..|.-++... ..|..+++... ... .+ ..+.
T Consensus 138 ~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-------------~~~--~~~~~~~ 202 (349)
T 3v64_C 138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-------------GRR--IIADTHL 202 (349)
T ss_dssp TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------SCE--ESCCSSC
T ss_pred CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-------------CcE--EEEECCC
Confidence 3566666654433222333334458899999666555555443 44666665321 111 11 1121
Q ss_pred ccccEEEEEEccCCCEEEEEe-CCCcEEEEecCC
Q 003308 379 TNAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (832)
Q Consensus 379 t~a~I~~IaFSpDg~~LAsgS-~DgTVhIwdl~~ 411 (832)
..-..|+|+|++..|..+- ..++|..+++..
T Consensus 203 --~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 203 --FWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp --SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred --CCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 2368999998777665554 456788888753
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=84.39 E-value=51 Score=35.88 Aligned_cols=95 Identities=15% Similarity=0.052 Sum_probs=55.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcC-CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCc
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~d-Gt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t 379 (832)
+.|.+.|+........+.........|+++|.+.+|.-++.. ...|..+++.-. ..... +..+.
T Consensus 181 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-------------~~~~~-~~~~l- 245 (400)
T 3p5b_L 181 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------DIYSL-VTENI- 245 (400)
T ss_dssp TEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-------------SCEEE-ECSSC-
T ss_pred CeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-------------ccEEE-EECCC-
Confidence 467777776554444444333456899999976655555432 123666665421 11111 11221
Q ss_pred cccEEEEEEccCCCEEEEEe-CCCcEEEEecCC
Q 003308 380 NAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (832)
Q Consensus 380 ~a~I~~IaFSpDg~~LAsgS-~DgTVhIwdl~~ 411 (832)
.....|+|+++++.|..+- ..++|..+++..
T Consensus 246 -~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 246 -QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 2478999999888776664 456788888753
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=83.63 E-value=2.1 Score=51.16 Aligned_cols=75 Identities=9% Similarity=0.037 Sum_probs=47.9
Q ss_pred cCCC-CeEEEEEc-CCCCEEEEEEc-CC---CEEEEEeCCCC-CCCCCCccCCCCceeEEEEEeccCccccEEEEEEccC
Q 003308 319 AHKS-PISALCFD-PSGILLVTASV-QG---HNINIFKIIPG-ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 391 (832)
Q Consensus 319 aH~~-pIs~LaFS-PdG~lLATaS~-dG---t~I~Iwdi~t~-~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpD 391 (832)
.|.. .+...+|| |||++||-+.. .| ..|+++|+.++ ..-. .. +.. ...+++||||
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~----------~~---~~~-----~~~~~~WspD 231 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA----------DK---VSG-----TNGEIVWGPD 231 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC----------CC---EEE-----ECSCCEECSS
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC----------cc---ccC-----ceeeEEEecC
Confidence 3443 68889999 99999986544 33 24889998764 2100 01 111 1236889999
Q ss_pred CCEEEEEeCCC-----cEEEEecCC
Q 003308 392 SNWIMISSSRG-----TSHLFAINP 411 (832)
Q Consensus 392 g~~LAsgS~Dg-----TVhIwdl~~ 411 (832)
|+.|+..+.|. .|.++++.+
T Consensus 232 g~~l~y~~~d~~~~~~~v~~~~lgt 256 (751)
T 2xe4_A 232 HTSLFYVTKDETLRENKVWRHVMGK 256 (751)
T ss_dssp TTEEEEEEECTTCCEEEEEEEETTS
T ss_pred CCEEEEEEECCCCCCCEEEEEECCC
Confidence 99998887763 355566644
No 273
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=83.27 E-value=57 Score=35.62 Aligned_cols=105 Identities=13% Similarity=0.235 Sum_probs=70.9
Q ss_pred CCCcEEEEEecCCeEEEEeccCCCeeEEeeec--CCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccC
Q 003308 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRY--DGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (832)
Q Consensus 16 ~~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~--dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~D 93 (832)
+..+|+++=....+||+|++.. +-+..| ..+|-+|+++.. ..||+|++
T Consensus 76 P~~~ViALrag~~LQiFnletK----~klks~~~~e~VvfWkWis~---------------~~L~lVT~----------- 125 (365)
T 2xzh_A 76 PASKVIALKAGKTLQIFNIEMK----SKMKAHTMTDDVTFWKWISL---------------NTVALVTD----------- 125 (365)
T ss_dssp SSSSEEEEEETTEEEEEETTTT----EEEEEEECSSCEEEEEECSS---------------SEEEEEES-----------
T ss_pred CCccEEEEecCCeEEEechHHh----hhhcceecCCccEEEEecCC---------------CeEEEEcC-----------
Confidence 4578999887788999999863 233323 579999999842 26899985
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCEEEEEECCC-CcEEEEEeC-----CCCEEEEEEcC--CEEEE-E-------eCCEE
Q 003308 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRS-QSYVHMLKF-----RSPIYSVRCSS--RVVAI-C-------QAAQV 157 (832)
Q Consensus 94 g~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~T-g~~V~tL~f-----~s~V~sV~~S~--r~LAV-a-------~~~~I 157 (832)
+.|.-|++.. ...++.+.- ...|.+-++++ +.+++ + ..+.+
T Consensus 126 -----------------------taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m 182 (365)
T 2xzh_A 126 -----------------------NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 182 (365)
T ss_dssp -----------------------SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEE
T ss_pred -----------------------CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeE
Confidence 4588888864 356666643 45788888863 55544 2 12578
Q ss_pred EEEECCCCceEEEEecC
Q 003308 158 HCFDAATLEIEYAILTN 174 (832)
Q Consensus 158 ~vwDl~t~~~~~tl~t~ 174 (832)
.+|..+.. .-+.+++|
T Consensus 183 QLYS~er~-~sQ~ieGh 198 (365)
T 2xzh_A 183 QLYSVDRK-VSQPIEGH 198 (365)
T ss_dssp EEEETTTT-EEEEECCS
T ss_pred EEEeeccc-ccceeeee
Confidence 88887754 34556665
No 274
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=82.32 E-value=16 Score=47.07 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=41.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEE-cCCEEEEEeCCEEEEEECCC
Q 003308 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAAT 164 (832)
Q Consensus 117 ~tVrlWDL~Tg~~V~tL~f~s~V~sV~~-S~r~LAVa~~~~I~vwDl~t 164 (832)
++++|+|+.+.+.+++..++.+|.==+| |.+.|+...+..|+-|++..
T Consensus 86 ~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~ 134 (1630)
T 1xi4_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134 (1630)
T ss_pred CeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCC
Confidence 7899999999999999999887765555 78999999899999999964
No 275
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=82.01 E-value=75 Score=36.05 Aligned_cols=105 Identities=13% Similarity=0.216 Sum_probs=70.1
Q ss_pred CCCcEEEEEecCCeEEEEeccCCCeeEEeeec--CCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccC
Q 003308 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRY--DGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (832)
Q Consensus 16 ~~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~--dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~D 93 (832)
+..+|+++=....+||+|++.. +-+..| ..+|-+|+++.. ..||+|++
T Consensus 75 P~~~iiALrag~~lQiFnle~K----~klks~~~~e~VvfWkWis~---------------~~l~lVT~----------- 124 (494)
T 1bpo_A 75 PASKVIALKAGKTLQIFNIEMK----SKMKAHTMTDDVTFWKWISL---------------NTVALVTD----------- 124 (494)
T ss_dssp SSSSCEEEEETTEEEEEETTTT----EEEEEEECSSCCCEEEEEET---------------TEEEEECS-----------
T ss_pred CCCcEEEEecCCeEEEEchHHh----hhhcceecCCCceEEEecCC---------------CeEEEEcC-----------
Confidence 4578888877788999999863 223323 468889999842 26888885
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCEEEEEECCC-CcEEEEEeC-----CCCEEEEEEc--CCEEEE-E-------eCCEE
Q 003308 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRS-QSYVHMLKF-----RSPIYSVRCS--SRVVAI-C-------QAAQV 157 (832)
Q Consensus 94 g~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~T-g~~V~tL~f-----~s~V~sV~~S--~r~LAV-a-------~~~~I 157 (832)
+.|.-|++.. ...++.+.- ...|.+-+++ .+.+++ + ..+.+
T Consensus 125 -----------------------taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m 181 (494)
T 1bpo_A 125 -----------------------NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (494)
T ss_dssp -----------------------SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEE
T ss_pred -----------------------CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceE
Confidence 4588888864 346666643 4578888886 355553 2 13578
Q ss_pred EEEECCCCceEEEEecC
Q 003308 158 HCFDAATLEIEYAILTN 174 (832)
Q Consensus 158 ~vwDl~t~~~~~tl~t~ 174 (832)
.+|..+... -+.+++|
T Consensus 182 QLYS~er~~-sQ~ieGh 197 (494)
T 1bpo_A 182 QLYSVDRKV-SQPIEGH 197 (494)
T ss_dssp EEEESTTCC-EEEECCS
T ss_pred EEeeccccc-cchheee
Confidence 888877543 4556665
No 276
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=82.00 E-value=5.3 Score=43.43 Aligned_cols=99 Identities=12% Similarity=0.124 Sum_probs=66.4
Q ss_pred CCCeEEEEECC---CCcEEEEec--cCC-----------CCeEEEEEcCCCCEEEEEEcC-CCEEEEEeCCCCCCCCCCc
Q 003308 299 NVGMVIVRDIV---SKNVIAQFR--AHK-----------SPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSA 361 (832)
Q Consensus 299 ~~G~V~IwDl~---s~~~l~~~~--aH~-----------~pIs~LaFSPdG~lLATaS~d-Gt~I~Iwdi~t~~~~~~s~ 361 (832)
.+..|..||+. +++.+.... ... .....|+.+++|...+|.+.. +. ||.+.+. +
T Consensus 98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~---I~rV~pd--G---- 168 (334)
T 2p9w_A 98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA---IARVSAD--G---- 168 (334)
T ss_dssp SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE---EEEECTT--S----
T ss_pred CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe---EEEEeCC--C----
Confidence 35678899999 777655443 211 247899999999999998877 64 5666553 0
Q ss_pred cCCCCceeEEEEEec--cCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 362 CDAGTSYVHLYRLQR--GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 362 ~~~~~~~~~l~~l~r--G~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
.....+-+.. ..+..-...|+|.|||+.|++....|.+..||+..
T Consensus 169 -----~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 169 -----KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp -----CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred -----CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 1112122222 11111267899999999998887799999999873
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=81.70 E-value=56 Score=34.40 Aligned_cols=95 Identities=9% Similarity=0.050 Sum_probs=52.7
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEc-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCc
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~-dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t 379 (832)
+.|.++|+........+......-..|+++|.+.+|.-+.. ....|..++..-. ....+ +..+.
T Consensus 101 ~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~------------~~~~~--~~~~l- 165 (318)
T 3sov_A 101 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS------------SRFII--INSEI- 165 (318)
T ss_dssp TEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC------------SCEEE--ECSSC-
T ss_pred CEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC------------CeEEE--EECCC-
Confidence 45777776654332223233345588999997655555553 2233555554321 01111 11122
Q ss_pred cccEEEEEEccCCCEEEEEe-CCCcEEEEecCC
Q 003308 380 NAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (832)
Q Consensus 380 ~a~I~~IaFSpDg~~LAsgS-~DgTVhIwdl~~ 411 (832)
..-..|+|+++++.|..+- ..+.|..+++..
T Consensus 166 -~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 166 -YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 2368999999777666554 467788888753
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=80.62 E-value=67 Score=34.62 Aligned_cols=101 Identities=9% Similarity=-0.063 Sum_probs=56.7
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCcc
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~ 380 (832)
+.|...|+........+......-..|+|+|++..|.-+......|..+|+... ..+.+ +..+.
T Consensus 225 ~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~------------~~~~~--~~~~~-- 288 (386)
T 3v65_B 225 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS------------HRKAV--ISQGL-- 288 (386)
T ss_dssp CEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC------------SCEEE--ECSSC--
T ss_pred CEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC------------eeEEE--EECCC--
Confidence 345556655432222222222345789999988888877777666788876432 11222 11121
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003308 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 381 a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~ 418 (832)
.....|++ .++..+.+-...+.|..++..++.....+
T Consensus 289 ~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 289 PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 23677888 34455556666777877775454444444
No 279
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=80.43 E-value=10 Score=41.39 Aligned_cols=96 Identities=11% Similarity=0.119 Sum_probs=58.7
Q ss_pred CCeEEEEECCCC----cEEEEeccCC-CCeEEEEEcCCCCEEEEEEc---C------------CCEEEEEeCCCCCCCCC
Q 003308 300 VGMVIVRDIVSK----NVIAQFRAHK-SPISALCFDPSGILLVTASV---Q------------GHNINIFKIIPGILGTS 359 (832)
Q Consensus 300 ~G~V~IwDl~s~----~~l~~~~aH~-~pIs~LaFSPdG~lLATaS~---d------------Gt~I~Iwdi~t~~~~~~ 359 (832)
...|.||++... ..+.++.+.. ...+.++++++|.+.+|.+. | .. =+||.+.++
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~-g~vyr~d~~----- 211 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW-SFVTYYSPN----- 211 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC-EEEEEECTT-----
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc-cEEEEEECC-----
Confidence 356777776542 2344454332 35789999999999888652 1 11 234444432
Q ss_pred CccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCC
Q 003308 360 SACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLG 413 (832)
Q Consensus 360 s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS-~DgTVhIwdl~~~g 413 (832)
..+. +..+.. .-+.|+||||+++|..+. ..++|+.|++...+
T Consensus 212 -------~~~~---~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g 254 (355)
T 3sre_A 212 -------DVRV---VAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANW 254 (355)
T ss_dssp -------CCEE---EEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred -------eEEE---eecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCC
Confidence 1121 112222 258899999998877655 57899999997644
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=78.00 E-value=27 Score=36.03 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=55.4
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEc-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecc
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~-dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG 377 (832)
..+.|..||.... ....+.. ......|+|+++|+++++... ++..|..+|..++ ....+..+. +
T Consensus 51 ~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g------------~~~~~~~~~-~ 115 (306)
T 2p4o_A 51 EVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG------------TVETLLTLP-D 115 (306)
T ss_dssp TTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS------------CEEEEEECT-T
T ss_pred CCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC------------eEEEEEeCC-C
Confidence 4577888887754 3333332 245788999999997665543 2322445565554 223333321 1
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 378 ~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
......+++.+++..+++-+.++.|.++|...
T Consensus 116 --~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 116 --AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp --CSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred --ccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence 11245667777776666655688777777643
No 281
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=77.12 E-value=1.3e+02 Score=36.09 Aligned_cols=96 Identities=16% Similarity=0.044 Sum_probs=55.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 300 ~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dG-t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
.+.|.+.|+........+.........|+++|.+.+|.-+.... ..|.+.++.-. .+. .+-..
T Consensus 492 ~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-------------~~~--~lv~~- 555 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------DIY--SLVTE- 555 (791)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------CEE--EEECS-
T ss_pred CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-------------ceE--EEEeC-
Confidence 35678888776544333333444578999999865555554322 33666665421 121 22111
Q ss_pred ccccEEEEEEccCCCEEEEEe-CCCcEEEEecCC
Q 003308 379 TNAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (832)
Q Consensus 379 t~a~I~~IaFSpDg~~LAsgS-~DgTVhIwdl~~ 411 (832)
.-.....|++.+++.+|..+- ...+|..+++.-
T Consensus 556 ~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 556 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 112478999998777776664 345777777753
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=76.79 E-value=5.4 Score=46.52 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=62.1
Q ss_pred eEEEEECCCCc--EEEEec-cCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 302 MVIVRDIVSKN--VIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 302 ~V~IwDl~s~~--~l~~~~-aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
.+.+||..+++ .+..+. .+..-..++++.++|++++.|+.++..+.+||..+. ....+-.+.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~------------~W~~~~~~~--- 284 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD------------SWIPGPDMQ--- 284 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT------------EEEECCCCS---
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC------------ceeECCCCC---
Confidence 58899998865 333343 233344568899999999999866656899998765 111111111
Q ss_pred cccc-EEEEEEccCCCEEEEEe-CC-----CcEEEEecCCC
Q 003308 379 TNAV-IQDISFSDDSNWIMISS-SR-----GTSHLFAINPL 412 (832)
Q Consensus 379 t~a~-I~~IaFSpDg~~LAsgS-~D-----gTVhIwdl~~~ 412 (832)
..+ -..+++-+||++++.|+ .+ .++.+||..+.
T Consensus 285 -~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 285 -VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp -SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred -ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 111 12456678999999998 34 57899998753
No 283
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=75.46 E-value=10 Score=41.56 Aligned_cols=99 Identities=11% Similarity=0.238 Sum_probs=62.8
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC----CCCE--EEEEEcCC---CEEEEEeCCCCCCCCCCccCCCCc
Q 003308 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP----SGIL--LVTASVQG---HNINIFKIIPGILGTSSACDAGTS 367 (832)
Q Consensus 297 ~~~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSP----dG~l--LATaS~dG---t~I~Iwdi~t~~~~~~s~~~~~~~ 367 (832)
....+-+.|||+ +++.+..+.. +.+..+..-| .|+. ||.++..+ +.|.+|++.+..
T Consensus 46 t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~------------ 110 (355)
T 3amr_A 46 TNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN------------ 110 (355)
T ss_dssp EETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT------------
T ss_pred EcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC------------
Confidence 345578999999 8888888864 4566666555 3333 45555433 569999885430
Q ss_pred eeEEEEEec-----cCccccEEEEEE--ccC-CC-EEEEEeCCCcEEEEecCC
Q 003308 368 YVHLYRLQR-----GLTNAVIQDISF--SDD-SN-WIMISSSRGTSHLFAINP 411 (832)
Q Consensus 368 ~~~l~~l~r-----G~t~a~I~~IaF--SpD-g~-~LAsgS~DgTVhIwdl~~ 411 (832)
..+..+-+ +.....++.+|+ +|+ ++ ++.+...+|.+..|++..
T Consensus 111 -~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~ 162 (355)
T 3amr_A 111 -GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA 162 (355)
T ss_dssp -CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred -CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence 11222211 011134788898 775 54 677888899999999964
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=71.88 E-value=25 Score=38.87 Aligned_cols=94 Identities=12% Similarity=0.161 Sum_probs=56.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCC---C-EEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG---H-NINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dG---t-~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~r 376 (832)
+.|+.+|+.+++....+. .......|+|+++|.+|..+...+ . .+.+++. .+ . ......+..
T Consensus 159 ~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g---~---------~~~~~~l~~ 224 (430)
T 3tc9_A 159 HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES---G---------FKVITELTK 224 (430)
T ss_dssp EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG---T---------SCSEEEEEE
T ss_pred CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC---c---------eeeeeeecc
Confidence 788899998776544333 344578899999999666665422 1 2323332 22 0 010011211
Q ss_pred cCccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCC
Q 003308 377 GLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 377 G~t~a~I~~IaFSp-Dg~~LAsgS~DgTVhIwdl~~ 411 (832)
. ....+++++| +|.++++-...+.|..|+...
T Consensus 225 ~---~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 225 G---QNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp C---SSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred C---CCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 1 1256789999 777776666778888888763
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=71.79 E-value=1e+02 Score=35.13 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCEEEEEEcCCCEEEEEeC
Q 003308 323 PISALCFDPSGILLVTASVQGHNINIFKI 351 (832)
Q Consensus 323 pIs~LaFSPdG~lLATaS~dGt~I~Iwdi 351 (832)
.-..|+|+|+|.+|..++...+.|+.++.
T Consensus 311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 311 WEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 34789999999988888887787777654
No 286
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=70.29 E-value=1e+02 Score=31.72 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=48.9
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCcc-----ccEEEEEEccCCCEEE
Q 003308 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN-----AVIQDISFSDDSNWIM 396 (832)
Q Consensus 322 ~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~-----a~I~~IaFSpDg~~LA 396 (832)
..+++|+|+|.-..|..-|...+.+-++|..- .....+.|.+|... ..--.|+|.++|+..
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-------------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly- 238 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-------------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY- 238 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTC-------------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-------------CEEEEEEcCCccCCcccccCCCCeeEECCCCCEE-
Confidence 35689999997555555566667777887643 24556677766422 246899999999854
Q ss_pred EEeCCCcEEEEe
Q 003308 397 ISSSRGTSHLFA 408 (832)
Q Consensus 397 sgS~DgTVhIwd 408 (832)
++|...-+.+|.
T Consensus 239 IvsE~n~~y~f~ 250 (255)
T 3qqz_A 239 IVSEPNRFYRFT 250 (255)
T ss_dssp EEETTTEEEEEE
T ss_pred EEcCCceEEEEE
Confidence 557777555553
No 287
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=69.34 E-value=11 Score=43.98 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=39.5
Q ss_pred EEEEEcCCCCEEEEEEcC----------CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCE
Q 003308 325 SALCFDPSGILLVTASVQ----------GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 394 (832)
Q Consensus 325 s~LaFSPdG~lLATaS~d----------Gt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~ 394 (832)
-.|+|+|+|.+++.-+.+ |.. .+|-..+. ...++.|-++...+.+..++|+||++.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn-~~~~~~~~-------------~g~~~rf~~~P~gaE~TG~~fspDg~t 544 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNN-QMLCADPA-------------TGEIRRFMVGPIGCEVTGISFSPDQKT 544 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSC-EEEEECTT-------------TCCEEEEEECCTTCEEEEEEECTTSSE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccc-eEEEEeCC-------------CCeEEEEEeCCCCccCcCeeECCCCCE
Confidence 569999999977765432 121 23333221 023556667777788999999999988
Q ss_pred EEEE
Q 003308 395 IMIS 398 (832)
Q Consensus 395 LAsg 398 (832)
|.+.
T Consensus 545 lfvn 548 (592)
T 3zwu_A 545 LFVG 548 (592)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=69.03 E-value=15 Score=40.68 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=45.4
Q ss_pred eEEEEEcC-CCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEE-EeCC
Q 003308 324 ISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI-SSSR 401 (832)
Q Consensus 324 Is~LaFSP-dG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAs-gS~D 401 (832)
...++++| +|.++++-...+ .|..|+.... ....+..+.. ...-..|+|+|||++|.. -...
T Consensus 228 p~giavdp~~g~lyv~d~~~~-~V~~~~~~~~------------~~~~~~~~~~---~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAG-QVFRYDFTTQ------------ETTPLFTIQD---SGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTT-EEEEEETTTT------------EEEEEEECSS---SSCCEEEEECTTSSEEEEEETTT
T ss_pred ceEEEEeCCCCEEEEEECCCC-EEEEEECCCC------------cEEEEEEcCC---CCcceeEEEcCCCCEEEEEECCC
Confidence 35688999 777666654444 4788887654 1112222211 123578999999995544 4567
Q ss_pred CcEEEEecCC
Q 003308 402 GTSHLFAINP 411 (832)
Q Consensus 402 gTVhIwdl~~ 411 (832)
++|.+|+...
T Consensus 292 ~~I~~~~~d~ 301 (430)
T 3tc9_A 292 HYILRSDYDW 301 (430)
T ss_dssp TEEEEEEEET
T ss_pred CEEEEEeCCc
Confidence 7899888764
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=67.78 E-value=48 Score=36.60 Aligned_cols=102 Identities=12% Similarity=0.055 Sum_probs=59.6
Q ss_pred CCCCeEEEEECCCCcEEEEe-ccCC-CCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCC--CCCCCCCccCCCCceeEEEE
Q 003308 298 DNVGMVIVRDIVSKNVIAQF-RAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIP--GILGTSSACDAGTSYVHLYR 373 (832)
Q Consensus 298 ~~~G~V~IwDl~s~~~l~~~-~aH~-~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t--~~~~~~s~~~~~~~~~~l~~ 373 (832)
...+.|+.+|..++.....+ .... ..-..|+|+|+|.+|..+....+.|..++... +.... ...+.-
T Consensus 247 ~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~---------~~~~ag 317 (433)
T 4hw6_A 247 YHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAV---------PYIVCG 317 (433)
T ss_dssp TTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCC---------CEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCc---------EEEEEe
Confidence 34578999998877653333 2111 22346999999997777777667788877653 10000 000000
Q ss_pred E--eccC--------ccccEEEEEE---------ccCCCEEEEEeCCCcEEEEe
Q 003308 374 L--QRGL--------TNAVIQDISF---------SDDSNWIMISSSRGTSHLFA 408 (832)
Q Consensus 374 l--~rG~--------t~a~I~~IaF---------SpDg~~LAsgS~DgTVhIwd 408 (832)
. ..|. .-..-..|+| .++|.+.++-+..+.|++++
T Consensus 318 ~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 318 QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 0 0010 0112578999 77887777766677888876
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=67.27 E-value=2.2e+02 Score=34.27 Aligned_cols=102 Identities=7% Similarity=-0.082 Sum_probs=54.6
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccc
Q 003308 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 381 (832)
Q Consensus 302 ~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a 381 (832)
.|.+.++........+......-..|++++.+..|..+......|..+++.-. ..+.+..- .+. -.
T Consensus 538 ~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~------------~~~~v~~~-~~~-l~ 603 (791)
T 3m0c_C 538 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILED-EKR-LA 603 (791)
T ss_dssp EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEEEC-TTT-TS
T ss_pred eEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC------------ceEEEecC-CCc-cC
Confidence 45555555433333333333456889999988888888877666788776432 11222211 111 11
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003308 382 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 382 ~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~ 418 (832)
....|++..+ +++.+-...++|...+..++.....+
T Consensus 604 ~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 604 HPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp SEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence 2456766433 34444445566776665554444444
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=66.32 E-value=34 Score=37.04 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=62.9
Q ss_pred CCCeEEEEECCCCcEEEE-ecc----CCC--CeEEEEE---cCCCCEEEEEEc-------------CCCEEEEEeCC---
Q 003308 299 NVGMVIVRDIVSKNVIAQ-FRA----HKS--PISALCF---DPSGILLVTASV-------------QGHNINIFKII--- 352 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~-~~a----H~~--pIs~LaF---SPdG~lLATaS~-------------dGt~I~Iwdi~--- 352 (832)
..|.|..||...+..... +.. ... .+..|.| +|+|++|+++.. + ..+..||+.
T Consensus 33 ~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~-~~v~~~Dl~~~~ 111 (334)
T 2p9w_A 33 YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGA-SSFHSFNLPLSE 111 (334)
T ss_dssp TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSC-CEEEEEESSCCT
T ss_pred cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCC-CEEEEEcCCcCC
Confidence 457899999876543333 332 111 3578999 799999886542 3 347888987
Q ss_pred CCCCCCCCccCCCCceeEEEEEec---------cCccccEEEEEEccCCCEEEEEeCC-CcEEEEecCCCCC
Q 003308 353 PGILGTSSACDAGTSYVHLYRLQR---------GLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGG 414 (832)
Q Consensus 353 t~~~~~~s~~~~~~~~~~l~~l~r---------G~t~a~I~~IaFSpDg~~LAsgS~D-gTVhIwdl~~~g~ 414 (832)
++ .......|.. |......++|+..++|+.-++.+.- +. ||.+.+.|.
T Consensus 112 tg------------~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~ 169 (334)
T 2p9w_A 112 NS------------KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGK 169 (334)
T ss_dssp TC------------CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSC
T ss_pred CC------------CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCC
Confidence 54 1112223210 1011238899999999999888876 55 667766554
No 292
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=63.30 E-value=30 Score=37.11 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=47.7
Q ss_pred CCCeEEEEECCCCc-EEEEec---cCCCCeEEEEEcCC----CCEEEEEEc---CC---CEEEEEeCCCCCCCCCCccCC
Q 003308 299 NVGMVIVRDIVSKN-VIAQFR---AHKSPISALCFDPS----GILLVTASV---QG---HNINIFKIIPGILGTSSACDA 364 (832)
Q Consensus 299 ~~G~V~IwDl~s~~-~l~~~~---aH~~pIs~LaFSPd----G~lLATaS~---dG---t~I~Iwdi~t~~~~~~s~~~~ 364 (832)
..|.|+++|. .++ .+..+. .-......|+|+|+ |.+.++-+. ++ +.|..|+..... . .
T Consensus 47 ~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~-~------~ 118 (354)
T 3a9g_A 47 RPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGST-F------K 118 (354)
T ss_dssp TTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSS-C------C
T ss_pred CCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCC-c------C
Confidence 3488888873 343 333332 11245788999997 665555442 21 235555554320 0 0
Q ss_pred CCceeEEEE-EeccCccccEEEEEEccCCCEEEEEeC
Q 003308 365 GTSYVHLYR-LQRGLTNAVIQDISFSDDSNWIMISSS 400 (832)
Q Consensus 365 ~~~~~~l~~-l~rG~t~a~I~~IaFSpDg~~LAsgS~ 400 (832)
-...+.++. +..+. .+....|+|.|||++.++.++
T Consensus 119 ~~~~~~l~~~~~~~~-~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 119 LKEVKTLIDGIPGAY-IHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp EEEEEEEEEEEECCS-SCCCCCEEECTTSCEEEECCC
T ss_pred cCccEEEEEcCCCCC-CcCCceEEECCCCcEEEEECC
Confidence 001122222 32111 122567999999987766543
No 293
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=63.19 E-value=36 Score=36.32 Aligned_cols=93 Identities=10% Similarity=0.059 Sum_probs=46.7
Q ss_pred CCCeEEEEECCCCcEEEEec---cCCCCeEEEEEcCC----CCEEEEEEcCC----CEEEEEeCCCCCCCCCCccCCCCc
Q 003308 299 NVGMVIVRDIVSKNVIAQFR---AHKSPISALCFDPS----GILLVTASVQG----HNINIFKIIPGILGTSSACDAGTS 367 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~---aH~~pIs~LaFSPd----G~lLATaS~dG----t~I~Iwdi~t~~~~~~s~~~~~~~ 367 (832)
..|.|++++-.+.+.+..+. .-......|+|+|| |.+.++-...+ +.|..|+.... . . ..
T Consensus 49 ~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~---~--~----~~ 119 (352)
T 2ism_A 49 RPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGE---R--G----VL 119 (352)
T ss_dssp TTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSS---C--E----EE
T ss_pred CCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCC---C--c----Cc
Confidence 34889988821122333332 11345788999998 55545444321 33556665432 0 0 01
Q ss_pred eeEEEE-Eec-cCccccEEEEEEccCCCEEEEEeC
Q 003308 368 YVHLYR-LQR-GLTNAVIQDISFSDDSNWIMISSS 400 (832)
Q Consensus 368 ~~~l~~-l~r-G~t~a~I~~IaFSpDg~~LAsgS~ 400 (832)
.+.+.+ +.. ....+....|+|.|||.+.++.++
T Consensus 120 ~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~ 154 (352)
T 2ism_A 120 DRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGE 154 (352)
T ss_dssp EEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCC
T ss_pred eEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECC
Confidence 122332 321 111122468999999976665443
No 294
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=62.93 E-value=37 Score=37.95 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=36.3
Q ss_pred CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC----ccccEEEEEEccC---CCEE
Q 003308 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL----TNAVIQDISFSDD---SNWI 395 (832)
Q Consensus 323 pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~----t~a~I~~IaFSpD---g~~L 395 (832)
.-..|+|.|||++|++- ..|..|.+++...+ ....+..+.... ...-+.+|+|+|| +.+|
T Consensus 28 ~P~~~a~~pdG~l~V~e-~~gg~I~~~~~~~g------------~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l 94 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTE-RATGKILRVNPESG------------SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI 94 (454)
T ss_dssp SEEEEEECTTSCEEEEE-TTTCEEEEECTTTC------------CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred CceEEEEcCCCcEEEEE-cCCCEEEEEECCCC------------cEeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence 34689999999988875 44433566654333 122233332211 0123779999996 5555
Q ss_pred EEEe
Q 003308 396 MISS 399 (832)
Q Consensus 396 AsgS 399 (832)
..+.
T Consensus 95 Yv~~ 98 (454)
T 1cru_A 95 YISG 98 (454)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5444
No 295
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=62.77 E-value=1.6e+02 Score=31.12 Aligned_cols=79 Identities=9% Similarity=-0.085 Sum_probs=47.3
Q ss_pred CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCC
Q 003308 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (832)
Q Consensus 323 pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~Dg 402 (832)
.-..|+|+|++..|.-+......|..+|+... ..+.+.. .+ ......|++ .++....+-...+
T Consensus 204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~------------~~~~~~~--~~--~~~P~giav-~~~~ly~td~~~~ 266 (349)
T 3v64_C 204 WPNGLTIDYAGRRMYWVDAKHHVIERANLDGS------------HRKAVIS--QG--LPHPFAITV-FEDSLYWTDWHTK 266 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEEC--SS--CSSEEEEEE-ETTEEEEEETTTT
T ss_pred CcceEEEeCCCCEEEEEECCCCEEEEEeCCCC------------ceEEEEe--CC--CCCceEEEE-ECCEEEEecCCCC
Confidence 45789999988888877777666888886532 1122211 11 123567888 3445555555667
Q ss_pred cEEEEecCCCCCceee
Q 003308 403 TSHLFAINPLGGSVNF 418 (832)
Q Consensus 403 TVhIwdl~~~g~~~~~ 418 (832)
.|..++..++.....+
T Consensus 267 ~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 267 SINSANKFTGKNQEII 282 (349)
T ss_dssp EEEEEETTTCCSCEEE
T ss_pred eEEEEEccCCCccEEe
Confidence 7777765444444444
No 296
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=62.57 E-value=2.4e+02 Score=33.12 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=58.8
Q ss_pred CCeEEEEECCCCcEEEEec-----cCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 003308 300 VGMVIVRDIVSKNVIAQFR-----AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (832)
Q Consensus 300 ~G~V~IwDl~s~~~l~~~~-----aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l 374 (832)
.+-|.++|..+++.. .+. .+...|.+|..+++|.+.+... +| +.+||..++ ....+
T Consensus 426 ~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G--l~~~~~~~~---------------~~~~~ 486 (795)
T 4a2l_A 426 AGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA--LVRFNPEQR---------------SFTTI 486 (795)
T ss_dssp TTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEES-SC--EEEEETTTT---------------EEEEC
T ss_pred cCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc--eeEEeCCCC---------------eEEEc
Confidence 345888998877643 333 1345799999999999776654 54 678987664 11111
Q ss_pred ec-----cCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 375 QR-----GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 375 ~r-----G~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
.. +.....|.+|...++|++.+.+ . +-+.+|+...
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~ 526 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEG 526 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEET
T ss_pred cccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCC
Confidence 11 2222459999999999866544 4 4577787754
No 297
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=60.49 E-value=1.9e+02 Score=31.25 Aligned_cols=102 Identities=6% Similarity=-0.096 Sum_probs=56.0
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccc
Q 003308 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 381 (832)
Q Consensus 302 ~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a 381 (832)
.|...++........+...-..-..|+|+|++..|.-++.....|..+|+... ..+.+... .+. -.
T Consensus 226 ~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~------------~~~~~~~~-~~~-l~ 291 (400)
T 3p5b_L 226 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILED-EKR-LA 291 (400)
T ss_dssp CEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------CCEEEEEC-SST-TS
T ss_pred EEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC------------ccEEEEeC-CCC-CC
Confidence 35555554332222222222345789999998888888877677888887532 11222221 111 11
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003308 382 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 382 ~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~ 418 (832)
....|++. .+..+.+-...+.|..++..++.....+
T Consensus 292 ~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 292 HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp SEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 24567773 3345555566677887776554444444
No 298
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=59.61 E-value=22 Score=39.43 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=43.5
Q ss_pred EEEEEcC-CCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCce-eEEEEEeccCccccEEEEEEccCCCEEEEE-eCC
Q 003308 325 SALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY-VHLYRLQRGLTNAVIQDISFSDDSNWIMIS-SSR 401 (832)
Q Consensus 325 s~LaFSP-dG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~-~~l~~l~rG~t~a~I~~IaFSpDg~~LAsg-S~D 401 (832)
..++++| +|.++++-..++ .|..+|..++ .. ..+.. -+.. ..-..|+|+|||++|..+ +..
T Consensus 231 ~giavd~~~G~lyv~d~~~~-~V~~~d~~~g------------~~~~~~~~--~~~~-~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYTRYHHA-MISSYDPATG------------TLTEEEVM--MDTK-GSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp CCCEECTTTCCEEECBTTCS-EEEEECTTTC------------CEEEEEEE--CSCC-SSCEEEEECTTSSEEEEEETTT
T ss_pred CEEEEeCCCCeEEEEECCCC-EEEEEECCCC------------eEEEEEec--cCCC-CCcccEEEeCCCCEEEEEeCCC
Confidence 5688999 777666544444 4777776644 11 12222 1211 123479999999955544 456
Q ss_pred CcEEEEecCC
Q 003308 402 GTSHLFAINP 411 (832)
Q Consensus 402 gTVhIwdl~~ 411 (832)
+.|..+++..
T Consensus 295 ~~I~~~~~d~ 304 (433)
T 4hw6_A 295 HCIYRVDYNR 304 (433)
T ss_dssp TEEEEEEBCT
T ss_pred CEEEEEeCCC
Confidence 7898888764
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=59.31 E-value=52 Score=35.06 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe---ccCccccEEEEEEccC---CCEEEE
Q 003308 324 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGLTNAVIQDISFSDD---SNWIMI 397 (832)
Q Consensus 324 Is~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~---rG~t~a~I~~IaFSpD---g~~LAs 397 (832)
-..|+|+|||+++++ ..+|+ |.+++ .+ ....+..+. .+ ......|+|+|| +.+|.+
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~-I~~i~--~g------------~~~~~~~~~v~~~g--~~~p~gia~~pdf~~~g~lYv 94 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGR-IRLFR--EG------------RLSTYAELSVYHRG--ESGLLGLALHPRFPQEPYVYA 94 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTE-EEEEE--TT------------EEEEEEECCCCCST--TCSEEEEEECTTTTTSCEEEE
T ss_pred ceEEEEcCCCeEEEE-eCCCe-EEEEE--CC------------CccEeecceEeecC--CCCceeEEECCCCCCCCEEEE
Confidence 468999999997666 45576 77777 33 112222221 11 123789999999 555554
Q ss_pred EeC-C-----CcEEEEecC
Q 003308 398 SSS-R-----GTSHLFAIN 410 (832)
Q Consensus 398 gS~-D-----gTVhIwdl~ 410 (832)
+.. . ..|..|++.
T Consensus 95 ~~~~~~~~~~~~v~r~~~~ 113 (352)
T 2ism_A 95 YRTVAEGGLRNQVVRLRHL 113 (352)
T ss_dssp EEEECTTSSEEEEEEEEEC
T ss_pred EEecCCCCCccEEEEEEeC
Confidence 433 2 456666665
No 300
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=58.30 E-value=1.2e+02 Score=39.42 Aligned_cols=105 Identities=13% Similarity=0.230 Sum_probs=64.3
Q ss_pred CCCcEEEEEecCCeEEEEeccCCCeeEEeeec--CCCEEEEEEecCCCcccccCCcccccCCEEEEEeCCCCccCccccC
Q 003308 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRY--DGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (832)
Q Consensus 16 ~~~~vLl~Gy~~G~qVWdv~~~~~~~ellS~~--dG~Vr~v~ilp~p~~~~~~~d~f~~~rPLLavv~~g~~~g~~~~~D 93 (832)
+..+|+++=....+||+|++.... +..| ..+|-+|+++.. ..||+|++
T Consensus 75 P~~~iiALrag~~lQiFnl~~k~k----lks~~~~e~VvfWkWis~---------------~~l~lVT~----------- 124 (1630)
T 1xi4_A 75 PASKVIALKAGKTLQIFNIEMKSK----MKAHTMTDDVTFWKWISL---------------NTVALVTD----------- 124 (1630)
T ss_pred CCcceEEEecCCeEEEeehHHhhh----hcccccCCCceEEEecCC---------------CeeEEEcC-----------
Confidence 457888887777899999987432 2222 468999999732 25888875
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCEEEEEECCCC-cEEEEEeC-----CCCEEEEEEc--CCEEEE-E-------eCCEE
Q 003308 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQ-SYVHMLKF-----RSPIYSVRCS--SRVVAI-C-------QAAQV 157 (832)
Q Consensus 94 g~~~~~~g~~~~~h~~g~~~~~~~tVrlWDL~Tg-~~V~tL~f-----~s~V~sV~~S--~r~LAV-a-------~~~~I 157 (832)
+.|.-|++... .+++.+.- ...|.+-+++ .+.+++ + ..+.+
T Consensus 125 -----------------------~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 125 -----------------------NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred -----------------------CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCccccee
Confidence 45788888532 33333321 4567777775 355543 2 13567
Q ss_pred EEEECCCCceEEEEecC
Q 003308 158 HCFDAATLEIEYAILTN 174 (832)
Q Consensus 158 ~vwDl~t~~~~~tl~t~ 174 (832)
.+|..+... -+.+.+|
T Consensus 182 QLyS~er~~-sQ~iegh 197 (1630)
T 1xi4_A 182 QLYSVDRKV-SQPIEGH 197 (1630)
T ss_pred eeeeccccc-chhhhHh
Confidence 777765432 2334444
No 301
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=58.15 E-value=60 Score=40.87 Aligned_cols=91 Identities=11% Similarity=0.136 Sum_probs=57.6
Q ss_pred eEEEEECCCCcEEEEeccCC-CCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCcc
Q 003308 302 MVIVRDIVSKNVIAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (832)
Q Consensus 302 ~V~IwDl~s~~~l~~~~aH~-~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~ 380 (832)
.|++.+...++.+..++... ..|.+.+.+. .+++.++ .+. +.+|++..+ ....+.+. -. .
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~-l~~fel~~~------------~L~~~~~~--~l-~ 553 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRA-LYYLQIHPQ------------ELRQISHT--EM-E 553 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTE-EEEEEEETT------------EEEEEEEE--EC-S
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCE-EEEEEeeCC------------ceeeeccc--CC-C
Confidence 35666665555666666433 4677766653 4566665 444 677877653 11221111 12 3
Q ss_pred ccEEEEEEccC------CCEEEEEeC-CCcEEEEecCC
Q 003308 381 AVIQDISFSDD------SNWIMISSS-RGTSHLFAINP 411 (832)
Q Consensus 381 a~I~~IaFSpD------g~~LAsgS~-DgTVhIwdl~~ 411 (832)
..|.|+++.|. ++++|+|.. |++++|+.+..
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 46999999863 579999996 99999999974
No 302
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=55.16 E-value=80 Score=34.14 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCC
Q 003308 322 SPISALCFDPSGILLVTASVQGHNINIFKIIP 353 (832)
Q Consensus 322 ~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t 353 (832)
..-..|+|.|||++|++--..|+ |++++...
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~-I~~v~~~~ 62 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEAT-ITRVDAKT 62 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCE-EEEECTTT
T ss_pred CCceEEEEcCCCcEEEEEecCCE-EEEEECCC
Confidence 34578999999998888654676 66666443
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=53.43 E-value=51 Score=37.14 Aligned_cols=84 Identities=24% Similarity=0.342 Sum_probs=50.7
Q ss_pred CCCCeEEEEEcCC---CCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec--cCc--cccEEEEEEccCC
Q 003308 320 HKSPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR--GLT--NAVIQDISFSDDS 392 (832)
Q Consensus 320 H~~pIs~LaFSPd---G~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~r--G~t--~a~I~~IaFSpDg 392 (832)
...+|..+-|.|- |..|++=-.|+. ||+||+.....-+ .-+.+... |.. .-.|.++||+.++
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~~P----------~~L~k~~~~fg~d~~~~ev~S~~Fg~~~ 191 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQEKP----------IVLNKPNNSFGLDARVNDITDLEFSKDG 191 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTSCC----------EEESCCCSEEESCSSCCCEEEEEECTTS
T ss_pred CCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCCCC----------cchhccccccCCCcccceEEEEEEcCCC
Confidence 3578999999995 457888888887 9999998631100 00100000 111 1348999999987
Q ss_pred CEEEEEeCCCcEEEEecCCCCC
Q 003308 393 NWIMISSSRGTSHLFAINPLGG 414 (832)
Q Consensus 393 ~~LAsgS~DgTVhIwdl~~~g~ 414 (832)
-.|-+.+....=.||.+.|+-.
T Consensus 192 lTLYvl~~t~~GDIYAlcP~LP 213 (452)
T 3pbp_A 192 LTLYCLNTTEGGDIFAFYPFLP 213 (452)
T ss_dssp SCEEEEECTTSCEEEEESSCCC
T ss_pred cEEEEEecCCCCCEEEECCCCc
Confidence 6666655322224666766533
No 304
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=53.33 E-value=2.1e+02 Score=29.55 Aligned_cols=82 Identities=7% Similarity=-0.119 Sum_probs=50.3
Q ss_pred CCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCC
Q 003308 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (832)
Q Consensus 322 ~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~D 401 (832)
..-..|+|+|++..|..++.....|..+|+... ..+.+... +........|++. .+..+.+-...
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~------------~~~~~~~~--~~~~~~P~giav~-~~~ly~~d~~~ 228 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILED--EKRLAHPFSLAVF-EDKVFWTDIIN 228 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEEEC--TTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecCCC------------ceEEEeec--CCccCCcEEEEEE-CCEEEEEECCC
Confidence 345789999998888877776666888887532 11222221 1111235678884 35555566667
Q ss_pred CcEEEEecCCCCCceee
Q 003308 402 GTSHLFAINPLGGSVNF 418 (832)
Q Consensus 402 gTVhIwdl~~~g~~~~~ 418 (832)
+.|..++..++.....+
T Consensus 229 ~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 229 EAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TEEEEEETTTCCCCEEE
T ss_pred CeEEEEeCCCCcceEEE
Confidence 78888887655444444
No 305
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=53.09 E-value=61 Score=38.18 Aligned_cols=95 Identities=18% Similarity=0.248 Sum_probs=57.3
Q ss_pred CeEEEEECCCCcEEEEeccC-----CCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 003308 301 GMVIVRDIVSKNVIAQFRAH-----KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH-----~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~ 375 (832)
+-|.++|..+++........ ...|.+|+.+++|.+.+....+| +..||..+. . ...+...
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G--l~~~~~~~~------------~-~~~~~~~ 533 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG--VGIYTPDMQ------------L-VRKFNQY 533 (781)
T ss_dssp TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC--EEEECTTCC------------E-EEEECTT
T ss_pred CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC--EEEEeCCCC------------e-EEEccCC
Confidence 34677887776543322222 35799999999999876554455 566776553 1 1112112
Q ss_pred ccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 376 rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
.+.....|.+|+..++|++.++ +.+|-+..|+...
T Consensus 534 ~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 534 EGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARN 568 (781)
T ss_dssp TTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTT
T ss_pred CCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCC
Confidence 2333345999999999986544 4466546666543
No 306
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=52.06 E-value=36 Score=39.65 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=37.7
Q ss_pred eEEEEEcCCCCEEEEEEcC----------CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCC
Q 003308 324 ISALCFDPSGILLVTASVQ----------GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN 393 (832)
Q Consensus 324 Is~LaFSPdG~lLATaS~d----------Gt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~ 393 (832)
-..|+|+++|.+.+..+.. |. =.||.+.+. .+ .+..+-.+...+.+..++||||++
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gn-n~v~~~dp~----------tG---el~~fl~~P~~aEpnGiafSPD~k 543 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGN-NQMLCADPA----------TG---EIRRFMVGPIGCEVTGISFSPDQK 543 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCS-CEEEEECTT----------TC---CEEEEEECCTTCEEEEEEECTTSS
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCC-ceEEEEeCC----------CC---eEEEEEeCCCCccccCCEECCCCC
Confidence 4579999999988743321 11 135554432 01 233333444446799999999999
Q ss_pred EEEEE
Q 003308 394 WIMIS 398 (832)
Q Consensus 394 ~LAsg 398 (832)
.|.++
T Consensus 544 tLfV~ 548 (592)
T 4a9v_A 544 TLFVG 548 (592)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88775
No 307
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=50.17 E-value=29 Score=40.24 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=48.1
Q ss_pred EEEEcC-CCCEEEEEEcCC----------CEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCE
Q 003308 326 ALCFDP-SGILLVTASVQG----------HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 394 (832)
Q Consensus 326 ~LaFSP-dG~lLATaS~dG----------t~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~ 394 (832)
++++.| +|++++.|+.+. ..+.+||..+. . ...+..+..... .....+++..|+++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-~-----------w~~~~~~~~~~~-~~~~~~~~~~~g~l 256 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-I-----------VSDRTVTVTKHD-MFCPGISMDGNGQI 256 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC-C-----------BCCCEEEECSCC-CSSCEEEECTTSCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC-c-----------EEeCcccCCCCC-CccccccCCCCCCE
Confidence 567778 999999987643 14788998775 1 122222311111 11235788999999
Q ss_pred EEEEeC-CCcEEEEecCCC
Q 003308 395 IMISSS-RGTSHLFAINPL 412 (832)
Q Consensus 395 LAsgS~-DgTVhIwdl~~~ 412 (832)
+++|+. +.++++||..+.
T Consensus 257 yv~GG~~~~~v~~yd~~t~ 275 (656)
T 1k3i_A 257 VVTGGNDAKKTSLYDSSSD 275 (656)
T ss_dssp EEECSSSTTCEEEEEGGGT
T ss_pred EEeCCCCCCceEEecCcCC
Confidence 999984 568999998653
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=48.68 E-value=58 Score=35.37 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=33.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCC
Q 003308 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 353 (832)
Q Consensus 300 ~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t 353 (832)
.|.|.-+|.. ++ ..+...-.--+.|+|||||++|..++.....|..|++..
T Consensus 202 ~g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 202 WSFVTYYSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp CEEEEEECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ccEEEEEECC--eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 3556666653 22 122111234578999999999888887666789999864
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=47.18 E-value=73 Score=33.93 Aligned_cols=112 Identities=8% Similarity=0.104 Sum_probs=0.0
Q ss_pred cc-ccccCCCCeEEEEECCCC--cEEEEec----cCCCCeEEEEEcCC---CCEEEEEEcC-------CCEEEEEeCCCC
Q 003308 292 GH-FPDADNVGMVIVRDIVSK--NVIAQFR----AHKSPISALCFDPS---GILLVTASVQ-------GHNINIFKIIPG 354 (832)
Q Consensus 292 g~-~~s~~~~G~V~IwDl~s~--~~l~~~~----aH~~pIs~LaFSPd---G~lLATaS~d-------Gt~I~Iwdi~t~ 354 (832)
+. +.-++..|.|+++|.... +.+..+. ........|+|+|| +..|..+... .+.|..|++...
T Consensus 29 G~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~ 108 (353)
T 2g8s_A 29 NHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDD 108 (353)
T ss_dssp TCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTT
T ss_pred CCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCC
Q ss_pred CCCCCCccCCCCceeEEEEEeccCcc-----ccEEEEEEccCCCEEEEEeCCCcE------------EEEecCCCCC
Q 003308 355 ILGTSSACDAGTSYVHLYRLQRGLTN-----AVIQDISFSDDSNWIMISSSRGTS------------HLFAINPLGG 414 (832)
Q Consensus 355 ~~~~~s~~~~~~~~~~l~~l~rG~t~-----a~I~~IaFSpDg~~LAsgS~DgTV------------hIwdl~~~g~ 414 (832)
.........+-.+... +.-..|+|.||| +|..+..|++- +|+.+.+.+.
T Consensus 109 ----------~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 109 ----------LSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp ----------SSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred ----------CCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
No 310
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=46.91 E-value=1.2e+02 Score=33.81 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=48.3
Q ss_pred CeEEEEECCCCc--EEEEecc------CCCCeEEEEEcC----CCCEEEEEEc------C-----CCEEEEEeCCCCCCC
Q 003308 301 GMVIVRDIVSKN--VIAQFRA------HKSPISALCFDP----SGILLVTASV------Q-----GHNINIFKIIPGILG 357 (832)
Q Consensus 301 G~V~IwDl~s~~--~l~~~~a------H~~pIs~LaFSP----dG~lLATaS~------d-----Gt~I~Iwdi~t~~~~ 357 (832)
+.|++++..+++ .+..+.. ....+..|+|+| +|.+.++-+. + .+.|.-|+....
T Consensus 48 g~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~--- 124 (454)
T 1cru_A 48 GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKS--- 124 (454)
T ss_dssp CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETT---
T ss_pred CEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCC---
Confidence 467777765443 2333431 234677999999 5665555443 1 122334443221
Q ss_pred CCCccCCCCceeEEEE-EeccCccccEEEEEEccCCCEEEEEeCCC
Q 003308 358 TSSACDAGTSYVHLYR-LQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (832)
Q Consensus 358 ~~s~~~~~~~~~~l~~-l~rG~t~a~I~~IaFSpDg~~LAsgS~Dg 402 (832)
. ..-...+.+++ +..+ ..+....|+|.|||++.++.++.+
T Consensus 125 ~----~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~~Gd~~ 165 (454)
T 1cru_A 125 T----DTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYTIGDQG 165 (454)
T ss_dssp T----TEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEEECCTT
T ss_pred C----CCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEEECCCC
Confidence 0 00001233333 3222 123478999999998777765543
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=44.94 E-value=75 Score=33.95 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=40.3
Q ss_pred CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe---ccCccccEEEEEEccC---CCEEE
Q 003308 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGLTNAVIQDISFSDD---SNWIM 396 (832)
Q Consensus 323 pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~---rG~t~a~I~~IaFSpD---g~~LA 396 (832)
.-..|+|+|||+++++ ..+|+ |+++| ..+ . ..+..+. .+ ......|+|+|| +.+|.
T Consensus 30 ~P~~ia~~pdG~l~V~-e~~g~-I~~~d-~~G------------~-~~~~~~~v~~~g--~~g~~gia~~pdf~~~g~ly 91 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT-ERPGR-LVLIS-PSG------------K-KLVASFDVANVG--EAGLLGLALHPEFPKKSWVY 91 (354)
T ss_dssp CEEEEEEEETTEEEEE-ETTTE-EEEEC-SSC------------E-EEEEECCCCCST--TCSEEEEEECTTTTTSCEEE
T ss_pred CCeEEEEcCCCeEEEE-eCCCE-EEEEe-CCC------------c-eEeeccceeecC--CCceeeEEeCCCCCcCCEEE
Confidence 4578999999996665 45576 66665 232 1 1222221 11 123789999998 55554
Q ss_pred EEeC----C----CcEEEEecC
Q 003308 397 ISSS----R----GTSHLFAIN 410 (832)
Q Consensus 397 sgS~----D----gTVhIwdl~ 410 (832)
++.. + ..|..|++.
T Consensus 92 v~~~~~~~~~~~~~~v~r~~~~ 113 (354)
T 3a9g_A 92 LYASYFAEGGHIRNRVIRGRLD 113 (354)
T ss_dssp EEEEEECGGGCEEEEEEEEEEC
T ss_pred EEEeccCCCCCcceEEEEEEEC
Confidence 4433 2 445555554
No 312
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=43.38 E-value=2.4e+02 Score=30.89 Aligned_cols=54 Identities=7% Similarity=0.159 Sum_probs=39.2
Q ss_pred CeEEEEECCCC--cEEEEeccC------CCCeEEEEEc---CC----CCEEEEEEcCCCEEEEEeCCCC
Q 003308 301 GMVIVRDIVSK--NVIAQFRAH------KSPISALCFD---PS----GILLVTASVQGHNINIFKIIPG 354 (832)
Q Consensus 301 G~V~IwDl~s~--~~l~~~~aH------~~pIs~LaFS---Pd----G~lLATaS~dGt~I~Iwdi~t~ 354 (832)
-+|.+||+.+. ++++++.-. .+-+..|+++ |+ +.+...++..+.-|-|+|+.++
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~ 191 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQ 191 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTT
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCC
Confidence 37999999999 998887621 3468899999 33 4455555554456889999987
No 313
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=41.78 E-value=1e+02 Score=34.99 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=41.3
Q ss_pred CeEEEEEcC-CCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe-ccC-ccccEEEEEE-------ccCC
Q 003308 323 PISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGL-TNAVIQDISF-------SDDS 392 (832)
Q Consensus 323 pIs~LaFSP-dG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~-rG~-t~a~I~~IaF-------SpDg 392 (832)
.-..|+|+| ++..|..+...++.|+++|+..+ .+..+- .+. .......|+| +++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---------------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G 204 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---------------MLSSPLNINTIPTNRIRSIAFNKKIEGYADEA 204 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---------------EEEEEECCTTSSCSBEEEEEECCCBTTTBCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---------------EEEEEEccCccccCCCcEEEEeecccccCCCC
Confidence 357899999 35545555555455888888765 223332 221 1123789999 9999
Q ss_pred CEEEEEeCCC
Q 003308 393 NWIMISSSRG 402 (832)
Q Consensus 393 ~~LAsgS~Dg 402 (832)
++|.++...+
T Consensus 205 ~~lyvad~~~ 214 (496)
T 3kya_A 205 EYMIVAIDYD 214 (496)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEeCCC
Confidence 9777776654
No 314
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=41.49 E-value=33 Score=40.52 Aligned_cols=96 Identities=17% Similarity=0.103 Sum_probs=52.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEc-C-CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 003308 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-Q-GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (832)
Q Consensus 299 ~~G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~-d-Gt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~r 376 (832)
..+.|.++|+........+.........|+++|++.+|..+.. . ++ |.++++... ....+. ..
T Consensus 473 ~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~-I~~~~~dG~------------~~~~l~--~~ 537 (699)
T 1n7d_A 473 VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGV------------DIYSLV--TE 537 (699)
T ss_dssp TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCC-EEBCCSSSC------------CCCEES--CS
T ss_pred cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCe-EEEEeCCCC------------CeeEEE--eC
Confidence 4567888888766544444332234477899996554444332 2 33 554444221 001111 11
Q ss_pred cCccccEEEEEEccCCCEEE-EEeCCCcEEEEecCC
Q 003308 377 GLTNAVIQDISFSDDSNWIM-ISSSRGTSHLFAINP 411 (832)
Q Consensus 377 G~t~a~I~~IaFSpDg~~LA-sgS~DgTVhIwdl~~ 411 (832)
+. .....|+|+|++++|. +-+..++|.++++..
T Consensus 538 ~l--~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 538 NI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp SC--SSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred CC--CCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 11 2256799999866554 444567888888853
No 315
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=40.68 E-value=56 Score=38.59 Aligned_cols=97 Identities=7% Similarity=-0.068 Sum_probs=50.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCcc
Q 003308 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (832)
Q Consensus 301 G~V~IwDl~s~~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~ 380 (832)
+.|.++++........+...-..-..|+|+|++..|..+......|.++++... ..+.+.... +. .
T Consensus 519 ~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~------------~~~~~~~~~-~~-~ 584 (699)
T 1n7d_A 519 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILEDE-KR-L 584 (699)
T ss_dssp CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS------------CCEEECCCS-SS-C
T ss_pred CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC------------ceEEEEecC-Cc-C
Confidence 567666665332211111112234679999987777777766666888887532 112221110 00 1
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003308 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (832)
Q Consensus 381 a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~ 412 (832)
.....|++..+ .++.+....++|..++..++
T Consensus 585 ~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 585 AHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 11345666544 34445555678888876543
No 316
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=40.42 E-value=3.3e+02 Score=28.14 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=44.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEE
Q 003308 319 AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (832)
Q Consensus 319 aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsg 398 (832)
.+...+..++|+|+|++++.+ .+|.+++-+|-. +. ....+ ..+. ...+..++++++++.++ +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~g-G~-----------tW~~~---~~~~-~~~~~~~~~~~~g~~~~-~ 221 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPG-QT-----------AWEPH---NRTT-SRRLHNMGFTPDGRLWM-I 221 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTT-CS-----------SCEEE---ECCS-SSCEEEEEECTTSCEEE-E
T ss_pred CCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCC-CC-----------ceeEC---CCCC-CCccceeEECCCCCEEE-E
Confidence 445678999999999988766 456644444420 10 01221 2222 33588999999998764 4
Q ss_pred eCCCcEEEEe
Q 003308 399 SSRGTSHLFA 408 (832)
Q Consensus 399 S~DgTVhIwd 408 (832)
+.+|.+.+.+
T Consensus 222 ~~~G~~~~s~ 231 (327)
T 2xbg_A 222 VNGGKIAFSD 231 (327)
T ss_dssp ETTTEEEEEE
T ss_pred eCCceEEEec
Confidence 5678776653
No 317
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=39.62 E-value=31 Score=35.54 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=40.6
Q ss_pred CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCC
Q 003308 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (832)
Q Consensus 323 pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~Dg 402 (832)
.+..|+|+|+|.+.|. .+|. ||.+.+....+. .+-....++-. .|-+. ...+.|.|+|.+.|+ .||
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~---Ly~~~~~t~~~~---~W~~s~t~IG~--~Gw~~--F~a~~fD~~G~LYav--~dG 107 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDK---IYKGTPPTHDND---NWMGRAKKIGN--GGWNQ--FQFLFFDPNGYLYAV--SKD 107 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTE---EEEESCCCSTTC---CHHHHCEEEEC--SCGGG--CSEEEECTTSCEEEE--ETT
T ss_pred cceeEEECCCccEEEE--eCCe---EEEECCCCCCcc---cccccccEecc--ccccc--ceEEEECCCCCEEEe--CCC
Confidence 5569999999998887 5554 666654311110 01011112111 01111 367899999999888 458
Q ss_pred cEEEEe
Q 003308 403 TSHLFA 408 (832)
Q Consensus 403 TVhIwd 408 (832)
.|.-++
T Consensus 108 ~iyr~~ 113 (236)
T 1tl2_A 108 KLYKAS 113 (236)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 665443
No 318
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=36.08 E-value=3.3e+02 Score=30.36 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=54.0
Q ss_pred CCCCeEEEEECCCC---cEEEEec---c------CCCCeEEEEEcCC----CCEEEEEEcCC-----------CEEEEEe
Q 003308 298 DNVGMVIVRDIVSK---NVIAQFR---A------HKSPISALCFDPS----GILLVTASVQG-----------HNINIFK 350 (832)
Q Consensus 298 ~~~G~V~IwDl~s~---~~l~~~~---a------H~~pIs~LaFSPd----G~lLATaS~dG-----------t~I~Iwd 350 (832)
...|.|++++.... .++..+. + .......|+|+|+ |.+.++-+.+. +.|.-|.
T Consensus 33 er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~ 112 (463)
T 2wg3_C 33 EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYT 112 (463)
T ss_dssp ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEE
T ss_pred eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEE
Confidence 45688999875432 2333332 1 1346788999996 77666544321 1233355
Q ss_pred CCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCC
Q 003308 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (832)
Q Consensus 351 i~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~Dg 402 (832)
+..+... . .+ ..+.+.++++......+.-..|+|.|||++.++.++.+
T Consensus 113 ~~~~~~~--~-~d-~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 113 VSRKNPH--Q-VD-LRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp BCTTCTT--S-BC-GGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EcCCCCC--c-cC-CCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 5432000 0 00 01224455554222334478999999998877766554
No 319
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=35.79 E-value=2.3e+02 Score=30.45 Aligned_cols=101 Identities=8% Similarity=0.071 Sum_probs=51.5
Q ss_pred cccCCCCeEEEEECCCCcE--EEEec----cCCCCeEEEEEcCC----CCEEEEEEc-CCCEEEEEeCCCCCCCCCCccC
Q 003308 295 PDADNVGMVIVRDIVSKNV--IAQFR----AHKSPISALCFDPS----GILLVTASV-QGHNINIFKIIPGILGTSSACD 363 (832)
Q Consensus 295 ~s~~~~G~V~IwDl~s~~~--l~~~~----aH~~pIs~LaFSPd----G~lLATaS~-dGt~I~Iwdi~t~~~~~~s~~~ 363 (832)
++....|.|++++..+++. +..+. ........|+|+|| |.+.++-+. ....|--|.+..+.... .
T Consensus 47 Vter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~----~ 122 (347)
T 3das_A 47 VSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSG----E 122 (347)
T ss_dssp EEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTT----C
T ss_pred EEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCccc----c
Confidence 3333478899988765543 33332 22356789999995 666554332 22223334443210000 0
Q ss_pred CCCceeEEEE-EeccCccccEEEEEEccCCCEEEEEeC
Q 003308 364 AGTSYVHLYR-LQRGLTNAVIQDISFSDDSNWIMISSS 400 (832)
Q Consensus 364 ~~~~~~~l~~-l~rG~t~a~I~~IaFSpDg~~LAsgS~ 400 (832)
.-...+.+++ +..+ ..+.-..|+|.|||.+.++.++
T Consensus 123 ~~~~~~~i~~~~p~~-~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 123 QLGAPDTVFRGIPKG-VIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp CBCCCEEEEEEECCC-SSCCCCCEEECTTSCEEEECBC
T ss_pred cCCCcEEEEEcCCCC-CCccCccccCCCCCCEEEEECC
Confidence 0011233333 3322 1223567999999987777554
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.00 E-value=90 Score=38.36 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=31.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCcee
Q 003308 382 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 417 (832)
Q Consensus 382 ~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~ 417 (832)
.|.+++..+|..++.+-+.|+++|||++.++....+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 478899999999999999999999999998765544
No 321
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=31.33 E-value=83 Score=32.37 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=39.0
Q ss_pred eEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCCc
Q 003308 324 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGT 403 (832)
Q Consensus 324 Is~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~DgT 403 (832)
-.++.|+|+|.+.|+ .||+ | +.+.+...+. +.|.....++-+ +|- ..+..|.|.|||.+.|+. |+.
T Consensus 90 F~a~~fD~~G~LYav--~dG~-i--yr~~pP~~~~---~~Wl~~a~~vg~--~gw--~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDK-L--YKASPPQSDT---DNWIARATEVGS--GGW--SGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTE-E--EEESCCCSTT---CCHHHHSEEEEC--SSG--GGEEEEEECTTSCEEEEE--TTE
T ss_pred ceEEEECCCCCEEEe--CCCE-E--EEeCCCcCCC---CceeccccEecc--CCC--CceEEEEECCCceEEEEe--CCc
Confidence 368999999999988 4586 3 3333321111 111111122111 121 248899999999998888 776
Q ss_pred E
Q 003308 404 S 404 (832)
Q Consensus 404 V 404 (832)
+
T Consensus 156 l 156 (236)
T 1tl2_A 156 F 156 (236)
T ss_dssp E
T ss_pred E
Confidence 3
No 322
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=30.06 E-value=4.9e+02 Score=29.98 Aligned_cols=97 Identities=10% Similarity=-0.046 Sum_probs=55.5
Q ss_pred CCeEEEEECCCCc-EEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccC
Q 003308 300 VGMVIVRDIVSKN-VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (832)
Q Consensus 300 ~G~V~IwDl~s~~-~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (832)
...|++.|+.... ....+.........|+|++.+..|.-++.....|..+++... . .....+..+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~------------~-~~~~v~~~~~ 83 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT------------E-SVQNVVVSGL 83 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------------CEEEECSSC
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCC------------C-ceEEEEeCCC
Confidence 3468888887643 122222333457899999987777777776665777776432 0 0111222232
Q ss_pred ccccEEEEEEccCCC-EEEEEeCCCcEEEEecCC
Q 003308 379 TNAVIQDISFSDDSN-WIMISSSRGTSHLFAINP 411 (832)
Q Consensus 379 t~a~I~~IaFSpDg~-~LAsgS~DgTVhIwdl~~ 411 (832)
.....||+.+.++ +..+-+..+.|.+.++..
T Consensus 84 --~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 84 --LSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp --SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred --CCcCeEEEEecCCEEEEEeCCCCEEEEEECCC
Confidence 2478999999655 445555678898888864
No 323
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=28.38 E-value=62 Score=40.51 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=30.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 003308 382 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (832)
Q Consensus 382 ~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~~g~~~~~ 418 (832)
.|.+++..+|.++|.+-+.|+++|||++.++....+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3667888899999999999999999999987665443
No 324
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=25.08 E-value=5.1e+02 Score=25.66 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=27.7
Q ss_pred eEEEEECCCCcEE--EEeccCCCCeEEEEEcCCCCEEEEEEcCC----CEEEEEeCCCC
Q 003308 302 MVIVRDIVSKNVI--AQFRAHKSPISALCFDPSGILLVTASVQG----HNINIFKIIPG 354 (832)
Q Consensus 302 ~V~IwDl~s~~~l--~~~~aH~~pIs~LaFSPdG~lLATaS~dG----t~I~Iwdi~t~ 354 (832)
.+.+||+.+.+-. ..+........++.+ ++++++.++.++ ..+.+||+.+.
T Consensus 176 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 176 SVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred eEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 4777887765422 222221222233333 677777776543 23778888765
No 325
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.90 E-value=1.5e+02 Score=36.47 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCC
Q 003308 323 PISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (832)
Q Consensus 323 pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~ 354 (832)
.|.+++..++..+|.|-+.|++ +|||++.++
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~ 267 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTN 267 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCE-EEEEETTTT
T ss_pred eEEEEeecCCCcEEEEEECCCE-EEEEECCCC
Confidence 4677888889999999999976 999999987
No 326
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=23.17 E-value=1.5e+02 Score=34.68 Aligned_cols=103 Identities=13% Similarity=0.029 Sum_probs=61.2
Q ss_pred eEEEEECCC----C-cEEEEeccCCCCeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCC--CCCCccCCCCceeEEEEE
Q 003308 302 MVIVRDIVS----K-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL--GTSSACDAGTSYVHLYRL 374 (832)
Q Consensus 302 ~V~IwDl~s----~-~~l~~~~aH~~pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~--~~~s~~~~~~~~~~l~~l 374 (832)
.|.|.|... + ..+..+..-.+| ..+.++|||++++.++.-...+.|+|+..-.. ... ..+.. . ....+.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksP-HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k-~~~~~-~-~~~ae~ 374 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNP-HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK-LADPR-D-VIVGEP 374 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSC-CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC-CSCGG-G-GEEECC
T ss_pred CeeEEccccccccCCceEEEEeCCCCC-cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc-ccCcc-c-ceEeec
Confidence 467777765 2 233444433333 35789999999999887766689999874200 000 00000 0 111222
Q ss_pred eccCccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 003308 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (832)
Q Consensus 375 ~rG~t~a~I~~IaFSpDg~~LAsgS~DgTVhIwdl~~ 411 (832)
.-|.. -.-.+|.++|.-..+--.|..|-.|++..
T Consensus 375 e~GlG---PlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 375 ELGLG---PLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp BCCSC---EEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred cCCCc---ccEEEECCCCceEeeeeecceEEEEeccH
Confidence 23432 46789999994444555799999999964
No 327
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=23.02 E-value=2.2e+02 Score=29.50 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCC
Q 003308 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (832)
Q Consensus 323 pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~Dg 402 (832)
.+..|.+.++++++|.+ .+|. ||....+ ..+ .. .+..+. ...+..++|.+++++++++. +|
T Consensus 123 ~~~~i~~~~~~~~~~~~-~~g~---v~~S~Dg----------G~t-W~--~~~~~~-~~~~~~~~~~~~~~~~~~g~-~G 183 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMIT-NVGA---IYRTKDS----------GKN-WQ--ALVQEA-IGVMRNLNRSPSGEYVAVSS-RG 183 (327)
T ss_dssp CEEEEEEEETTEEEEEE-TTCC---EEEESST----------TSS-EE--EEECSC-CCCEEEEEECTTSCEEEEET-TS
T ss_pred CeEEEEEECCCCEEEEe-CCcc---EEEEcCC----------CCC-CE--EeecCC-CcceEEEEEcCCCcEEEEEC-CC
Confidence 35667777788877765 4565 3433322 001 22 111222 23588999999999887664 44
Q ss_pred c
Q 003308 403 T 403 (832)
Q Consensus 403 T 403 (832)
.
T Consensus 184 ~ 184 (327)
T 2xbg_A 184 S 184 (327)
T ss_dssp S
T ss_pred c
Confidence 4
No 328
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=20.79 E-value=7.1e+02 Score=25.68 Aligned_cols=79 Identities=11% Similarity=-0.082 Sum_probs=48.3
Q ss_pred CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCC
Q 003308 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (832)
Q Consensus 323 pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~Dg 402 (832)
.-..|+|+|++..|.-++.....|..+|+... ..+.+. .+. ......|++..+ ..+.+-...+
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~------------~~~~~~---~~~-~~~P~glav~~~-~lywtd~~~~ 229 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT------------NRQAVV---KGS-LPHPFALTLFED-ILYWTDWSTH 229 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEE---CSC-CSCEEEEEEETT-EEEEEETTTT
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCCCC------------ceEEEe---cCC-CCCceEEEEeCC-EEEEEecCCC
Confidence 34789999988888888877676888887532 112222 211 123567777543 4445555667
Q ss_pred cEEEEecCCCCCceee
Q 003308 403 TSHLFAINPLGGSVNF 418 (832)
Q Consensus 403 TVhIwdl~~~g~~~~~ 418 (832)
.|..++..++.....+
T Consensus 230 ~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 230 SILACNKYTGEGLREI 245 (318)
T ss_dssp EEEEEETTTCCSCEEE
T ss_pred eEEEEECCCCCceEEE
Confidence 7888887655444444
No 329
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=20.14 E-value=1e+03 Score=27.25 Aligned_cols=79 Identities=11% Similarity=-0.079 Sum_probs=44.1
Q ss_pred CeEEEEEcCCCCEEEEEEcCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccCccccEEEEEEccCCCEEEEEeCCC
Q 003308 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (832)
Q Consensus 323 pIs~LaFSPdG~lLATaS~dGt~I~Iwdi~t~~~~~~s~~~~~~~~~~l~~l~rG~t~a~I~~IaFSpDg~~LAsgS~Dg 402 (832)
.-..|++++++..|.-+......|..+|+... ..+.+. .+.-. ....|++..| ....+-...+
T Consensus 172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~------------~~~~~~---~~~~~-~P~gi~~~~~-~ly~td~~~~ 234 (619)
T 3s94_A 172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT------------NRQAVV---KGSLP-HPFALTLFED-ILYWTDWSTH 234 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTCCEEEESSSCC------------EEC-------------CCCEEESSS-EEEEECTTTC
T ss_pred CCcEEEEEccCCEEEEEeCCCCeEEEecCCCC------------ccEEEE---eCCCC-CceEEEEeCC-EEEEecCCCC
Confidence 45789999988888888776665777766432 111111 11111 1346777766 4444444567
Q ss_pred cEEEEecCCCCCceee
Q 003308 403 TSHLFAINPLGGSVNF 418 (832)
Q Consensus 403 TVhIwdl~~~g~~~~~ 418 (832)
+|...+..++.....+
T Consensus 235 ~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 235 SILACNKYTGEGLREI 250 (619)
T ss_dssp SEEEEESSSCCCCEEC
T ss_pred EEEEEECCCCcccEEE
Confidence 7777777654443333
Done!