Query 003309
Match_columns 832
No_of_seqs 730 out of 5147
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 21:03:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0521 Putative GTPase activa 100.0 6.5E-89 1.4E-93 791.7 39.6 693 2-824 9-740 (785)
2 KOG0705 GTPase-activating prot 100.0 5.1E-60 1.1E-64 501.6 21.8 386 278-800 287-721 (749)
3 KOG1451 Oligophrenin-1 and rel 100.0 8.3E-46 1.8E-50 393.5 33.2 348 4-426 10-366 (812)
4 cd07606 BAR_SFC_plant The Bin/ 100.0 9.7E-40 2.1E-44 322.7 23.7 201 15-215 2-202 (202)
5 cd07602 BAR_RhoGAP_OPHN1-like 100.0 7.9E-39 1.7E-43 314.2 23.4 201 13-216 1-207 (207)
6 cd07601 BAR_APPL The Bin/Amphi 100.0 1.7E-38 3.6E-43 314.9 25.2 207 13-223 1-214 (215)
7 cd07603 BAR_ACAPs The Bin/Amph 100.0 1.6E-38 3.5E-43 315.5 23.6 199 13-216 1-200 (200)
8 cd07636 BAR_GRAF The Bin/Amphi 100.0 5.8E-38 1.3E-42 306.9 23.5 201 13-216 1-207 (207)
9 cd07633 BAR_OPHN1 The Bin/Amph 100.0 6.8E-38 1.5E-42 300.8 22.7 201 13-216 1-207 (207)
10 cd07639 BAR_ACAP1 The Bin/Amph 100.0 7.9E-38 1.7E-42 306.1 23.1 199 13-216 1-200 (200)
11 cd07638 BAR_ACAP2 The Bin/Amph 100.0 2.3E-37 4.9E-42 303.4 23.4 199 13-216 1-200 (200)
12 cd07634 BAR_GAP10-like The Bin 100.0 2.5E-37 5.5E-42 301.9 22.4 201 13-216 1-207 (207)
13 cd07637 BAR_ACAP3 The Bin/Amph 100.0 8.7E-37 1.9E-41 301.7 23.2 198 13-216 1-200 (200)
14 cd07635 BAR_GRAF2 The Bin/Amph 100.0 4.5E-36 9.8E-41 293.7 23.7 201 13-215 1-206 (207)
15 KOG0818 GTPase-activating prot 100.0 4.3E-37 9.4E-42 321.8 10.7 211 510-794 6-221 (669)
16 cd07631 BAR_APPL1 The Bin/Amph 100.0 3.4E-34 7.3E-39 277.5 25.3 207 13-223 1-214 (215)
17 cd07641 BAR_ASAP1 The Bin/Amph 100.0 1.3E-33 2.8E-38 271.6 23.0 203 13-219 1-215 (215)
18 KOG0703 Predicted GTPase-activ 100.0 9.3E-36 2E-40 300.7 7.8 116 499-641 12-127 (287)
19 cd07632 BAR_APPL2 The Bin/Amph 100.0 1.3E-32 2.8E-37 263.5 23.9 206 13-222 1-213 (215)
20 cd07604 BAR_ASAPs The Bin/Amph 100.0 4.3E-32 9.3E-37 271.5 24.4 206 13-219 1-215 (215)
21 PF01412 ArfGap: Putative GTPa 100.0 6.6E-34 1.4E-38 259.3 8.3 114 501-639 2-115 (116)
22 smart00105 ArfGap Putative GTP 100.0 1.6E-32 3.6E-37 248.2 10.7 109 510-642 1-109 (112)
23 cd07642 BAR_ASAP2 The Bin/Amph 100.0 1.3E-30 2.9E-35 253.1 23.7 203 13-219 1-215 (215)
24 cd07640 BAR_ASAP3 The Bin/Amph 100.0 3.9E-30 8.4E-35 243.1 21.8 206 13-219 1-213 (213)
25 KOG1117 Rho- and Arf-GTPase ac 100.0 1.8E-31 3.9E-36 294.7 9.5 261 289-686 188-448 (1186)
26 COG5347 GTPase-activating prot 100.0 1.4E-30 3.1E-35 272.6 9.5 118 500-640 8-125 (319)
27 PLN03119 putative ADP-ribosyla 99.9 2.5E-28 5.4E-33 262.3 10.5 121 496-643 7-127 (648)
28 PLN03131 hypothetical protein; 99.9 5.7E-28 1.2E-32 261.6 10.3 121 496-643 7-127 (705)
29 cd07609 BAR_SIP3_fungi The Bin 99.9 6E-26 1.3E-30 226.4 19.9 210 14-224 1-212 (214)
30 PLN03114 ADP-ribosylation fact 99.9 5.8E-25 1.2E-29 225.0 11.4 119 501-641 11-129 (395)
31 KOG0704 ADP-ribosylation facto 99.9 3.7E-25 8E-30 224.5 5.4 83 500-584 7-89 (386)
32 KOG0706 Predicted GTPase-activ 99.9 9.5E-25 2.1E-29 229.6 6.6 83 500-584 11-93 (454)
33 KOG4412 26S proteasome regulat 99.9 1.4E-22 3E-27 188.4 11.7 158 651-832 39-196 (226)
34 KOG4412 26S proteasome regulat 99.8 3.4E-21 7.3E-26 179.2 9.8 127 703-832 36-163 (226)
35 cd07307 BAR The Bin/Amphiphysi 99.8 1.8E-18 4E-23 174.3 22.8 192 23-215 2-194 (194)
36 KOG0509 Ankyrin repeat and DHH 99.8 6.3E-20 1.4E-24 202.0 10.0 155 652-831 80-235 (600)
37 PHA02791 ankyrin-like protein; 99.8 4.1E-19 8.8E-24 188.2 15.3 174 652-832 32-218 (284)
38 PHA02875 ankyrin repeat protei 99.8 6.5E-19 1.4E-23 199.9 14.4 177 651-832 36-226 (413)
39 KOG0509 Ankyrin repeat and DHH 99.8 4.2E-19 9.1E-24 195.5 11.1 159 648-831 42-201 (600)
40 cd01251 PH_centaurin_alpha Cen 99.8 8.8E-19 1.9E-23 156.7 10.6 93 295-428 1-101 (103)
41 cd01233 Unc104 Unc-104 pleckst 99.8 9.8E-19 2.1E-23 155.8 10.2 95 293-428 2-99 (100)
42 PHA02878 ankyrin repeat protei 99.8 9.2E-19 2E-23 202.2 12.9 178 652-832 39-259 (477)
43 cd01264 PH_melted Melted pleck 99.8 1.2E-18 2.5E-23 152.4 9.8 92 295-426 2-100 (101)
44 PHA02859 ankyrin repeat protei 99.8 1.4E-18 3E-23 177.4 12.0 154 651-831 22-182 (209)
45 KOG0508 Ankyrin repeat protein 99.8 3.5E-19 7.7E-24 187.7 6.9 150 653-829 87-236 (615)
46 PHA02989 ankyrin repeat protei 99.8 3.1E-18 6.7E-23 198.5 15.4 178 652-831 71-312 (494)
47 PHA02874 ankyrin repeat protei 99.8 3.5E-18 7.6E-23 195.0 14.7 172 650-831 35-213 (434)
48 PHA03095 ankyrin-like protein; 99.8 5.3E-18 1.2E-22 195.9 15.2 178 652-831 119-313 (471)
49 cd01236 PH_outspread Outspread 99.8 3.2E-18 6.9E-23 151.3 9.6 92 295-424 1-101 (104)
50 PHA02875 ankyrin repeat protei 99.8 9.5E-18 2.1E-22 190.3 15.9 176 652-832 4-192 (413)
51 PHA03100 ankyrin repeat protei 99.7 8.3E-18 1.8E-22 194.8 15.1 176 652-832 108-307 (480)
52 cd01265 PH_PARIS-1 PARIS-1 ple 99.7 6.3E-18 1.4E-22 148.9 10.0 91 296-427 2-94 (95)
53 PHA02716 CPXV016; CPX019; EVM0 99.7 9E-18 1.9E-22 196.6 14.1 128 703-832 210-390 (764)
54 PHA03095 ankyrin-like protein; 99.7 1.2E-17 2.5E-22 193.1 14.3 179 652-832 85-281 (471)
55 PHA03100 ankyrin repeat protei 99.7 1.8E-17 3.9E-22 192.0 15.5 173 657-832 80-274 (480)
56 KOG0508 Ankyrin repeat protein 99.7 3.8E-18 8.2E-23 180.0 8.5 164 652-832 44-207 (615)
57 cd01238 PH_Tec Tec pleckstrin 99.7 8.4E-18 1.8E-22 151.2 9.1 95 294-426 1-106 (106)
58 PHA02859 ankyrin repeat protei 99.7 1.2E-17 2.5E-22 170.6 11.0 146 652-817 53-203 (209)
59 PHA02874 ankyrin repeat protei 99.7 3.1E-17 6.8E-22 187.2 15.3 174 651-831 69-278 (434)
60 PHA02743 Viral ankyrin protein 99.7 9.2E-18 2E-22 164.9 9.3 125 706-832 21-152 (166)
61 PHA02795 ankyrin-like protein; 99.7 2.6E-17 5.5E-22 181.0 13.5 158 650-832 116-286 (437)
62 PHA02716 CPXV016; CPX019; EVM0 99.7 1.2E-17 2.6E-22 195.6 11.5 179 651-831 213-426 (764)
63 PHA02791 ankyrin-like protein; 99.7 2.9E-17 6.2E-22 174.2 13.0 164 661-832 9-184 (284)
64 PHA02798 ankyrin-like protein; 99.7 2.9E-17 6.4E-22 190.1 14.3 178 652-831 73-314 (489)
65 PHA02946 ankyin-like protein; 99.7 2.5E-17 5.4E-22 187.1 13.2 176 651-832 73-267 (446)
66 cd01247 PH_GPBP Goodpasture an 99.7 2.7E-17 5.9E-22 143.2 10.3 88 296-425 2-90 (91)
67 PHA02876 ankyrin repeat protei 99.7 3E-17 6.5E-22 197.9 13.6 179 652-832 275-467 (682)
68 PHA02989 ankyrin repeat protei 99.7 5.2E-17 1.1E-21 188.3 13.5 158 653-832 38-209 (494)
69 PHA02917 ankyrin-like protein; 99.7 1.2E-16 2.5E-21 188.6 16.0 177 651-829 33-252 (661)
70 PHA02878 ankyrin repeat protei 99.7 5.7E-17 1.2E-21 187.2 12.9 160 665-829 148-322 (477)
71 smart00721 BAR BAR domain. 99.7 2.4E-15 5.2E-20 157.4 23.4 201 16-217 29-238 (239)
72 KOG0512 Fetal globin-inducing 99.7 4E-17 8.7E-22 150.9 8.4 97 732-829 89-185 (228)
73 PHA02741 hypothetical protein; 99.7 5.7E-17 1.2E-21 160.0 9.9 131 699-831 15-155 (169)
74 KOG4177 Ankyrin [Cell wall/mem 99.7 5.2E-17 1.1E-21 193.3 10.6 176 652-831 442-629 (1143)
75 cd01257 PH_IRS Insulin recepto 99.7 9.2E-17 2E-21 141.6 9.4 94 293-425 2-100 (101)
76 KOG0510 Ankyrin repeat protein 99.7 9.7E-17 2.1E-21 179.8 11.2 173 649-832 224-401 (929)
77 PLN03192 Voltage-dependent pot 99.7 1.4E-16 3.1E-21 194.8 13.2 155 650-832 525-679 (823)
78 cd01260 PH_CNK Connector enhan 99.7 1.8E-16 3.8E-21 140.7 9.6 91 295-426 2-96 (96)
79 PHA02884 ankyrin repeat protei 99.7 5E-16 1.1E-20 164.6 14.6 137 626-818 12-149 (300)
80 PHA02946 ankyin-like protein; 99.7 2.4E-16 5.2E-21 179.1 13.1 168 661-829 49-231 (446)
81 cd01250 PH_centaurin Centaurin 99.7 1.9E-16 4.2E-21 140.0 9.6 93 295-425 1-93 (94)
82 cd07594 BAR_Endophilin_B The B 99.7 1.9E-14 4.1E-19 145.4 24.6 193 15-215 18-228 (229)
83 PHA02876 ankyrin repeat protei 99.7 4.8E-16 1E-20 187.5 15.4 177 652-832 180-399 (682)
84 PHA02736 Viral ankyrin protein 99.7 1.2E-16 2.5E-21 155.3 7.0 130 699-832 11-150 (154)
85 cd01235 PH_SETbf Set binding f 99.7 4.3E-16 9.3E-21 139.8 10.0 91 296-427 2-101 (101)
86 cd01245 PH_RasGAP_CG5898 RAS G 99.6 3.6E-16 7.8E-21 136.3 8.1 91 295-425 1-97 (98)
87 cd07615 BAR_Endophilin_A3 The 99.6 7.3E-14 1.6E-18 139.7 25.6 188 15-218 8-218 (223)
88 KOG0510 Ankyrin repeat protein 99.6 6E-16 1.3E-20 173.6 11.6 179 651-832 155-365 (929)
89 KOG0502 Integral membrane anky 99.6 2.7E-16 5.8E-21 150.8 7.0 159 667-830 112-280 (296)
90 cd01249 PH_oligophrenin Oligop 99.6 4.7E-16 1E-20 134.6 7.5 96 295-425 1-103 (104)
91 KOG0514 Ankyrin repeat protein 99.6 4.7E-16 1E-20 159.6 8.5 154 651-829 269-428 (452)
92 cd01266 PH_Gab Gab (Grb2-assoc 99.6 1.1E-15 2.4E-20 138.3 9.6 91 296-426 2-107 (108)
93 cd01252 PH_cytohesin Cytohesin 99.6 1.6E-15 3.4E-20 141.4 10.7 92 295-428 2-114 (125)
94 cd07593 BAR_MUG137_fungi The B 99.6 1.6E-13 3.4E-18 137.6 25.8 190 15-214 8-206 (215)
95 PHA02917 ankyrin-like protein; 99.6 1.6E-15 3.4E-20 179.0 13.3 152 653-832 334-510 (661)
96 cd07613 BAR_Endophilin_A1 The 99.6 1.4E-13 3.1E-18 137.4 25.0 191 15-218 8-218 (223)
97 cd07616 BAR_Endophilin_B1 The 99.6 1.2E-13 2.5E-18 138.8 24.1 192 15-214 18-227 (229)
98 PF03114 BAR: BAR domain; Int 99.6 1.4E-13 3E-18 142.8 25.9 195 15-217 27-229 (229)
99 PHA02730 ankyrin-like protein; 99.6 1.4E-15 3E-20 175.1 11.6 156 653-832 346-522 (672)
100 KOG0195 Integrin-linked kinase 99.6 1.1E-15 2.5E-20 151.8 8.9 114 717-832 11-124 (448)
101 PHA02795 ankyrin-like protein; 99.6 2.3E-15 5E-20 165.6 12.1 153 661-832 87-245 (437)
102 cd07617 BAR_Endophilin_B2 The 99.6 1.6E-13 3.5E-18 136.3 24.0 183 15-214 18-218 (220)
103 PHA02798 ankyrin-like protein; 99.6 1.7E-15 3.7E-20 175.4 11.6 145 688-832 49-210 (489)
104 KOG0505 Myosin phosphatase, re 99.6 6.2E-16 1.3E-20 167.1 6.6 155 652-832 42-255 (527)
105 cd07614 BAR_Endophilin_A2 The 99.6 3E-13 6.5E-18 135.5 25.1 187 15-217 8-217 (223)
106 cd07595 BAR_RhoGAP_Rich-like T 99.6 2.8E-13 6E-18 139.3 25.5 202 15-221 16-229 (244)
107 PHA02730 ankyrin-like protein; 99.6 5.7E-15 1.2E-19 170.0 13.3 112 718-832 357-486 (672)
108 PHA02743 Viral ankyrin protein 99.6 3.2E-15 6.9E-20 146.9 9.5 135 652-807 22-162 (166)
109 cd07619 BAR_Rich2 The Bin/Amph 99.6 5.3E-13 1.2E-17 135.2 25.5 195 15-221 16-233 (248)
110 cd07592 BAR_Endophilin_A The B 99.6 4.6E-13 1E-17 135.2 25.0 187 15-217 8-217 (223)
111 cd01244 PH_RasGAP_CG9209 RAS_G 99.6 7.1E-15 1.5E-19 128.9 9.1 88 297-425 5-97 (98)
112 cd01241 PH_Akt Akt pleckstrin 99.6 9.4E-15 2E-19 130.6 10.1 95 293-427 1-102 (102)
113 cd07618 BAR_Rich1 The Bin/Amph 99.6 9.6E-13 2.1E-17 133.9 25.6 195 15-221 16-231 (246)
114 cd01246 PH_oxysterol_bp Oxyste 99.6 9.3E-15 2E-19 128.4 9.5 90 295-426 1-91 (91)
115 PF12796 Ank_2: Ankyrin repeat 99.6 1.8E-14 3.8E-19 126.0 10.9 83 744-832 1-83 (89)
116 KOG0502 Integral membrane anky 99.6 2.1E-15 4.5E-20 144.8 4.3 101 730-832 150-250 (296)
117 KOG4214 Myotrophin and similar 99.5 1.7E-14 3.6E-19 119.8 8.6 103 653-813 5-107 (117)
118 KOG4177 Ankyrin [Cell wall/mem 99.5 1.6E-14 3.4E-19 172.5 9.6 176 652-832 409-597 (1143)
119 PHA02741 hypothetical protein; 99.5 4.4E-14 9.6E-19 139.3 11.3 96 733-830 14-120 (169)
120 TIGR00870 trp transient-recept 99.5 1.6E-14 3.6E-19 175.6 9.0 166 651-817 18-219 (743)
121 PF00169 PH: PH domain; Inter 99.5 1.1E-13 2.4E-18 124.1 11.5 97 293-427 1-103 (104)
122 cd01219 PH_FGD FGD (faciogenit 99.5 9.1E-14 2E-18 124.0 10.6 98 294-428 3-100 (101)
123 KOG0514 Ankyrin repeat protein 99.5 1.7E-14 3.7E-19 148.3 6.7 128 699-830 262-395 (452)
124 KOG0195 Integrin-linked kinase 99.5 1.1E-14 2.5E-19 144.7 4.7 139 654-815 4-142 (448)
125 KOG0930 Guanine nucleotide exc 99.5 6.7E-14 1.4E-18 138.4 9.4 94 293-428 260-376 (395)
126 PF15413 PH_11: Pleckstrin hom 99.5 1.7E-13 3.7E-18 124.4 10.9 112 295-426 1-112 (112)
127 PF12796 Ank_2: Ankyrin repeat 99.5 9.7E-14 2.1E-18 121.3 9.1 64 740-803 26-89 (89)
128 cd07608 BAR_ArfGAP_fungi The B 99.5 3.8E-12 8.2E-17 123.2 20.6 180 14-207 1-183 (192)
129 cd07620 BAR_SH3BP1 The Bin/Amp 99.5 1.8E-11 3.8E-16 123.1 24.4 191 15-218 16-239 (257)
130 PHA02884 ankyrin repeat protei 99.5 3.8E-13 8.3E-18 142.7 12.3 95 736-832 28-128 (300)
131 PF15409 PH_8: Pleckstrin homo 99.4 4.3E-13 9.3E-18 113.8 8.6 87 297-426 1-88 (89)
132 PHA02792 ankyrin-like protein; 99.4 3E-13 6.5E-18 154.3 10.2 115 717-831 349-476 (631)
133 KOG1118 Lysophosphatidic acid 99.4 3.9E-11 8.4E-16 120.9 23.2 185 15-215 27-234 (366)
134 PHA02736 Viral ankyrin protein 99.4 4.7E-13 1E-17 130.0 9.2 100 701-800 51-153 (154)
135 PLN03192 Voltage-dependent pot 99.4 5.8E-13 1.3E-17 163.2 11.7 140 651-816 559-699 (823)
136 cd01220 PH_CDEP Chondrocyte-de 99.4 1.4E-12 3E-17 115.1 10.8 97 293-428 2-98 (99)
137 KOG0507 CASK-interacting adapt 99.4 1.6E-13 3.5E-18 153.3 5.9 165 652-829 5-169 (854)
138 KOG0505 Myosin phosphatase, re 99.4 9.3E-13 2E-17 142.8 9.5 166 649-815 72-273 (527)
139 cd01263 PH_anillin Anillin Ple 99.4 1.6E-12 3.6E-17 118.1 8.7 95 295-426 3-122 (122)
140 KOG0512 Fetal globin-inducing 99.4 1.5E-12 3.3E-17 120.9 8.4 88 743-832 66-154 (228)
141 cd07600 BAR_Gvp36 The Bin/Amph 99.4 2.9E-11 6.2E-16 123.6 17.9 200 9-215 32-241 (242)
142 PF13857 Ank_5: Ankyrin repeat 99.3 1.4E-12 3E-17 102.9 4.8 55 759-813 1-56 (56)
143 TIGR00870 trp transient-recept 99.3 4E-12 8.7E-17 154.8 11.4 123 704-830 127-279 (743)
144 cd01253 PH_beta_spectrin Beta- 99.3 7.7E-12 1.7E-16 112.7 9.6 84 306-425 19-103 (104)
145 KOG0507 CASK-interacting adapt 99.3 2.5E-12 5.5E-17 143.9 7.6 175 652-832 51-245 (854)
146 KOG4214 Myotrophin and similar 99.3 5.3E-12 1.2E-16 105.1 7.5 87 743-832 5-91 (117)
147 cd01254 PH_PLD Phospholipase D 99.3 9.2E-12 2E-16 114.8 9.6 36 391-426 86-121 (121)
148 KOG3676 Ca2+-permeable cation 99.3 6.4E-12 1.4E-16 142.7 10.1 143 652-830 186-330 (782)
149 KOG1710 MYND Zn-finger and ank 99.3 7.7E-12 1.7E-16 124.9 9.4 92 734-827 39-131 (396)
150 PHA02792 ankyrin-like protein; 99.3 3.9E-12 8.4E-17 145.3 8.3 105 725-829 90-238 (631)
151 cd01237 Unc112 Unc-112 pleckst 99.3 9.2E-12 2E-16 108.5 8.5 82 307-426 17-102 (106)
152 cd00204 ANK ankyrin repeats; 99.3 2.3E-11 5.1E-16 112.3 11.2 121 704-828 6-126 (126)
153 PF13637 Ank_4: Ankyrin repeat 99.3 7.7E-12 1.7E-16 98.0 6.7 54 740-793 1-54 (54)
154 cd00204 ANK ankyrin repeats; 99.3 4E-11 8.6E-16 110.8 12.3 94 736-831 3-96 (126)
155 COG0666 Arp FOG: Ankyrin repea 99.3 1.3E-11 2.8E-16 126.8 9.7 107 722-830 88-202 (235)
156 cd01230 PH_EFA6 EFA6 Pleckstri 99.2 4.1E-11 8.8E-16 108.6 10.6 102 295-429 2-113 (117)
157 PF13857 Ank_5: Ankyrin repeat 99.2 7.7E-12 1.7E-16 98.7 4.8 51 730-780 6-56 (56)
158 cd07590 BAR_Bin3 The Bin/Amphi 99.2 5.3E-09 1.1E-13 105.9 24.9 199 16-220 13-216 (225)
159 KOG0515 p53-interacting protei 99.2 1.3E-11 2.9E-16 132.1 6.1 100 728-829 571-673 (752)
160 smart00233 PH Pleckstrin homol 99.2 1.3E-10 2.7E-15 103.0 11.5 97 294-427 2-101 (102)
161 PTZ00322 6-phosphofructo-2-kin 99.2 5.3E-11 1.1E-15 141.8 11.6 87 742-830 84-170 (664)
162 PF13637 Ank_4: Ankyrin repeat 99.2 3.9E-11 8.5E-16 94.0 6.6 54 773-828 1-54 (54)
163 KOG0515 p53-interacting protei 99.2 4.1E-11 8.9E-16 128.5 8.6 86 745-832 555-640 (752)
164 KOG3725 SH3 domain protein SH3 99.2 4.2E-09 9E-14 103.4 20.4 191 20-212 43-258 (375)
165 PTZ00322 6-phosphofructo-2-kin 99.1 2.1E-10 4.5E-15 136.7 8.4 97 719-815 94-197 (664)
166 KOG3676 Ca2+-permeable cation 99.0 1.4E-10 3E-15 132.0 5.4 94 737-832 181-297 (782)
167 cd00821 PH Pleckstrin homology 99.0 7E-10 1.5E-14 97.1 8.2 95 295-426 1-96 (96)
168 COG0666 Arp FOG: Ankyrin repea 99.0 1.6E-09 3.4E-14 111.3 11.6 97 734-832 67-171 (235)
169 cd07591 BAR_Rvs161p The Bin/Am 99.0 1.6E-07 3.4E-12 96.1 25.3 197 16-218 13-213 (224)
170 cd01218 PH_phafin2 Phafin2 Pl 99.0 5.1E-09 1.1E-13 92.8 10.9 100 293-432 4-103 (104)
171 KOG0690 Serine/threonine prote 99.0 1.4E-09 3E-14 111.5 8.2 132 290-461 12-148 (516)
172 KOG4369 RTK signaling protein 99.0 5.7E-10 1.2E-14 128.3 5.9 173 654-830 827-1016(2131)
173 cd07588 BAR_Amphiphysin The Bi 99.0 4E-07 8.6E-12 91.6 25.4 193 16-219 14-209 (211)
174 PF15410 PH_9: Pleckstrin homo 98.9 2.6E-09 5.7E-14 98.3 8.6 107 295-427 2-118 (119)
175 KOG0702 Predicted GTPase-activ 98.9 8.3E-10 1.8E-14 118.6 6.0 119 500-643 13-132 (524)
176 PF10455 BAR_2: Bin/amphiphysi 98.9 2E-07 4.4E-12 97.1 22.8 136 76-216 152-287 (289)
177 cd01256 PH_dynamin Dynamin ple 98.9 5.2E-09 1.1E-13 88.0 8.7 91 293-425 1-103 (110)
178 KOG4369 RTK signaling protein 98.9 1.8E-09 4E-14 124.3 7.1 173 653-830 760-948 (2131)
179 cd00900 PH-like Pleckstrin hom 98.9 7.9E-09 1.7E-13 91.0 9.5 92 296-426 2-99 (99)
180 cd07598 BAR_FAM92 The Bin/Amph 98.9 1.1E-06 2.5E-11 88.5 25.4 198 15-218 5-204 (211)
181 KOG0818 GTPase-activating prot 98.9 8.9E-09 1.9E-13 110.1 9.9 93 735-829 122-221 (669)
182 cd07599 BAR_Rvs167p The Bin/Am 98.9 1.4E-06 2.9E-11 89.5 25.6 196 15-212 3-212 (216)
183 cd00011 BAR_Arfaptin_like The 98.8 1.1E-06 2.4E-11 86.8 23.7 189 18-212 3-200 (203)
184 KOG1710 MYND Zn-finger and ank 98.8 9.7E-09 2.1E-13 103.1 8.7 91 740-832 12-103 (396)
185 PF06456 Arfaptin: Arfaptin-li 98.8 1.4E-06 3.1E-11 88.9 24.4 187 18-209 34-229 (229)
186 KOG0783 Uncharacterized conser 98.8 1.8E-09 3.9E-14 121.5 3.3 84 732-815 44-128 (1267)
187 cd07660 BAR_Arfaptin The Bin/A 98.8 1.2E-06 2.5E-11 86.2 22.5 188 18-212 3-197 (201)
188 PF08397 IMD: IRSp53/MIM homol 98.8 1.1E-06 2.3E-11 90.3 23.3 190 23-216 5-208 (219)
189 KOG4424 Predicted Rho/Rac guan 98.8 6.8E-07 1.5E-11 98.4 22.3 106 291-433 270-375 (623)
190 cd07611 BAR_Amphiphysin_I_II T 98.8 3.6E-06 7.7E-11 83.8 25.3 192 17-219 15-209 (211)
191 cd07612 BAR_Bin2 The Bin/Amphi 98.8 3.2E-06 6.9E-11 84.2 24.8 192 17-219 15-209 (211)
192 KOG0506 Glutaminase (contains 98.7 9.7E-09 2.1E-13 109.4 5.1 93 736-830 502-595 (622)
193 cd07659 BAR_PICK1 The Bin/Amph 98.6 1.1E-05 2.4E-10 78.4 23.1 186 21-211 9-209 (215)
194 KOG1090 Predicted dual-specifi 98.6 1.9E-08 4.2E-13 114.8 4.3 95 292-427 1633-1731(1732)
195 cd01261 PH_SOS Son of Sevenles 98.6 2.4E-07 5.1E-12 83.1 10.3 105 293-428 4-110 (112)
196 cd01234 PH_CADPS CADPS (Ca2+-d 98.6 4.8E-08 1E-12 83.1 4.5 35 393-427 76-110 (117)
197 cd01259 PH_Apbb1ip Apbb1ip (Am 98.5 1.9E-07 4.1E-12 81.6 6.8 34 394-427 68-108 (114)
198 PF13606 Ank_3: Ankyrin repeat 98.5 1.4E-07 3E-12 63.7 4.0 28 740-767 2-29 (30)
199 cd07605 I-BAR_IMD Inverse (I)- 98.5 5.2E-05 1.1E-09 76.9 24.0 189 29-217 21-220 (223)
200 cd07628 BAR_Atg24p The Bin/Amp 98.5 5E-05 1.1E-09 75.5 23.4 176 19-214 9-184 (185)
201 cd07624 BAR_SNX7_30 The Bin/Am 98.5 3.5E-05 7.6E-10 77.8 22.4 184 9-214 13-199 (200)
202 PF13606 Ank_3: Ankyrin repeat 98.4 2.4E-07 5.3E-12 62.5 4.1 30 772-801 1-30 (30)
203 cd07596 BAR_SNX The Bin/Amphip 98.4 8.3E-05 1.8E-09 76.4 25.0 193 12-214 9-217 (218)
204 PF14593 PH_3: PH domain; PDB: 98.4 1.5E-06 3.3E-11 76.8 9.9 91 291-430 11-102 (104)
205 PF00023 Ank: Ankyrin repeat H 98.4 3.1E-07 6.7E-12 63.8 4.4 31 740-770 2-32 (33)
206 PF09325 Vps5: Vps5 C terminal 98.4 0.00011 2.4E-09 76.6 24.9 189 21-214 31-235 (236)
207 cd01242 PH_ROK Rok (Rho- assoc 98.4 2.7E-06 5.8E-11 74.4 9.8 40 388-427 69-110 (112)
208 PF00023 Ank: Ankyrin repeat H 98.4 5.4E-07 1.2E-11 62.5 4.4 33 772-804 1-33 (33)
209 KOG0522 Ankyrin repeat protein 98.4 7.9E-07 1.7E-11 97.1 7.8 84 742-827 22-107 (560)
210 KOG3771 Amphiphysin [Intracell 98.4 5.4E-05 1.2E-09 82.4 21.3 190 22-221 38-229 (460)
211 PF06730 FAM92: FAM92 protein; 98.3 0.00037 8E-09 69.3 25.0 190 16-211 13-204 (219)
212 cd01243 PH_MRCK MRCK (myotonic 98.3 4.2E-06 9E-11 74.3 10.1 107 295-426 4-118 (122)
213 KOG0782 Predicted diacylglycer 98.3 9.7E-07 2.1E-11 95.9 7.2 97 732-830 891-989 (1004)
214 KOG0506 Glutaminase (contains 98.3 4.3E-07 9.4E-12 97.1 4.2 89 652-797 508-597 (622)
215 KOG0705 GTPase-activating prot 98.3 1.6E-06 3.5E-11 94.9 7.9 87 743-831 627-717 (749)
216 cd07589 BAR_DNMBP The Bin/Amph 98.3 0.00023 4.9E-09 71.6 22.8 178 16-209 7-186 (195)
217 cd07661 BAR_ICA69 The Bin/Amph 98.2 0.00039 8.5E-09 67.4 22.1 190 18-213 3-201 (204)
218 cd07627 BAR_Vps5p The Bin/Amph 98.2 0.00045 9.7E-09 70.8 24.3 188 13-212 10-213 (216)
219 KOG0522 Ankyrin repeat protein 98.2 1.8E-06 3.8E-11 94.4 6.6 74 722-795 37-110 (560)
220 cd01239 PH_PKD Protein kinase 98.2 5E-06 1.1E-10 73.1 7.7 96 294-426 1-117 (117)
221 cd07623 BAR_SNX1_2 The Bin/Amp 98.2 0.00081 1.7E-08 69.3 25.1 187 23-214 21-221 (224)
222 cd07664 BAR_SNX2 The Bin/Amphi 98.1 0.0014 3.1E-08 67.3 25.4 189 22-214 30-231 (234)
223 cd07646 I-BAR_IMD_IRSp53 Inver 98.1 0.0012 2.6E-08 65.8 23.1 198 18-216 12-222 (232)
224 cd07622 BAR_SNX4 The Bin/Amphi 98.1 0.0016 3.5E-08 65.5 24.3 176 23-214 23-198 (201)
225 PTZ00267 NIMA-related protein 98.1 3.1E-05 6.8E-10 89.7 13.0 100 292-427 376-476 (478)
226 cd07665 BAR_SNX1 The Bin/Amphi 98.0 0.0022 4.9E-08 65.6 24.0 189 22-214 30-231 (234)
227 cd07644 I-BAR_IMD_BAIAP2L2 Inv 98.0 0.0018 3.8E-08 63.2 21.3 200 12-213 4-208 (215)
228 KOG3640 Actin binding protein 97.9 1.2E-05 2.6E-10 93.0 6.4 99 292-428 989-1107(1116)
229 KOG0511 Ankyrin repeat protein 97.9 2.2E-05 4.7E-10 82.2 7.7 83 741-828 37-119 (516)
230 cd07645 I-BAR_IMD_BAIAP2L1 Inv 97.9 0.006 1.3E-07 60.3 23.4 203 13-216 5-220 (226)
231 KOG2384 Major histocompatibili 97.9 2.4E-05 5.3E-10 74.7 6.8 73 730-802 2-75 (223)
232 cd07625 BAR_Vps17p The Bin/Amp 97.9 0.0081 1.8E-07 61.4 25.4 190 11-212 22-227 (230)
233 cd07629 BAR_Atg20p The Bin/Amp 97.9 0.0047 1E-07 61.6 23.0 176 18-213 8-185 (187)
234 KOG2384 Major histocompatibili 97.9 2.2E-05 4.9E-10 75.0 6.1 66 763-830 2-68 (223)
235 KOG3609 Receptor-activated Ca2 97.8 2.6E-05 5.6E-10 90.3 7.2 120 651-832 26-155 (822)
236 cd07667 BAR_SNX30 The Bin/Amph 97.8 0.0047 1E-07 63.1 22.5 179 15-212 59-237 (240)
237 cd07607 BAR_SH3P_plant The Bin 97.8 0.01 2.2E-07 56.7 22.7 189 23-213 10-207 (209)
238 KOG2059 Ras GTPase-activating 97.8 3.5E-05 7.6E-10 86.9 7.0 96 293-427 565-664 (800)
239 KOG0932 Guanine nucleotide exc 97.8 2.3E-05 4.9E-10 85.8 5.0 112 287-432 500-621 (774)
240 KOG3751 Growth factor receptor 97.8 6.2E-05 1.4E-09 82.1 8.3 38 289-328 313-350 (622)
241 cd07630 BAR_SNX_like The Bin/A 97.7 0.016 3.4E-07 58.2 23.9 182 15-210 12-193 (198)
242 cd07663 BAR_SNX5 The Bin/Amphi 97.7 0.021 4.4E-07 57.6 23.7 198 2-211 14-212 (218)
243 KOG0783 Uncharacterized conser 97.7 1.8E-05 3.9E-10 90.2 2.0 65 766-832 45-110 (1267)
244 cd07621 BAR_SNX5_6 The Bin/Amp 97.6 0.024 5.1E-07 57.4 23.9 180 23-211 33-213 (219)
245 cd01258 PH_syntrophin Syntroph 97.6 0.00021 4.5E-09 63.4 8.0 34 392-425 72-107 (108)
246 KOG3876 Arfaptin and related p 97.6 0.008 1.7E-07 60.3 18.7 173 18-205 126-305 (341)
247 cd01262 PH_PDK1 3-Phosphoinosi 97.6 0.00026 5.5E-09 60.0 7.1 86 294-426 2-87 (89)
248 cd07666 BAR_SNX7 The Bin/Amphi 97.5 0.055 1.2E-06 55.8 25.0 178 16-212 63-240 (243)
249 KOG0511 Ankyrin repeat protein 97.5 0.00013 2.9E-09 76.4 6.0 56 775-832 38-93 (516)
250 cd01222 PH_clg Clg (common-sit 97.5 0.00084 1.8E-08 58.9 10.0 34 394-427 59-95 (97)
251 KOG3723 PH domain protein Melt 97.5 6.9E-05 1.5E-09 82.2 3.7 107 288-433 730-842 (851)
252 cd01224 PH_Collybistin Collybi 97.5 0.00098 2.1E-08 59.1 10.1 94 294-425 3-105 (109)
253 cd01226 PH_exo84 Exocyst compl 97.5 0.00078 1.7E-08 58.8 9.3 39 389-427 60-98 (100)
254 cd07662 BAR_SNX6 The Bin/Amphi 97.4 0.051 1.1E-06 54.5 22.7 196 4-211 16-212 (218)
255 KOG0782 Predicted diacylglycer 97.4 0.00021 4.5E-09 78.3 6.2 87 744-832 870-958 (1004)
256 KOG0248 Cytoplasmic protein Ma 97.4 0.00011 2.4E-09 82.3 3.3 96 291-428 247-342 (936)
257 cd07653 F-BAR_CIP4-like The F- 97.4 0.12 2.7E-06 54.3 26.2 159 22-181 6-193 (251)
258 cd07643 I-BAR_IMD_MIM Inverse 97.3 0.083 1.8E-06 52.9 22.1 108 30-137 24-136 (231)
259 PTZ00283 serine/threonine prot 97.3 0.0035 7.5E-08 73.0 14.7 37 392-428 453-490 (496)
260 KOG0520 Uncharacterized conser 97.3 8.1E-05 1.8E-09 88.1 1.1 98 730-829 598-701 (975)
261 PF12814 Mcp5_PH: Meiotic cell 97.3 0.0029 6.4E-08 58.5 10.9 35 393-427 87-121 (123)
262 cd07648 F-BAR_FCHO The F-BAR ( 97.2 0.17 3.6E-06 53.6 25.2 152 23-181 7-175 (261)
263 cd01240 PH_beta-ARK Beta adren 97.2 0.00039 8.4E-09 60.4 4.0 97 293-429 3-100 (116)
264 cd07674 F-BAR_FCHO1 The F-BAR 97.2 0.061 1.3E-06 56.8 21.5 92 24-116 8-99 (261)
265 cd07651 F-BAR_PombeCdc15_like 97.2 0.23 4.9E-06 51.7 25.3 94 23-116 7-100 (236)
266 KOG1739 Serine/threonine prote 97.2 0.00041 8.8E-09 75.1 4.6 94 293-428 24-117 (611)
267 PLN02866 phospholipase D 97.1 0.0026 5.7E-08 76.6 10.6 36 392-427 272-307 (1068)
268 cd01221 PH_ephexin Ephexin Ple 97.0 0.0052 1.1E-07 56.2 9.5 33 392-424 81-119 (125)
269 KOG0521 Putative GTPase activa 97.0 0.00063 1.4E-08 81.4 4.6 87 708-794 657-743 (785)
270 KOG0520 Uncharacterized conser 97.0 0.00048 1E-08 81.8 3.2 93 736-831 570-664 (975)
271 cd07647 F-BAR_PSTPIP The F-BAR 96.9 0.65 1.4E-05 48.4 26.6 156 23-179 7-183 (239)
272 cd07626 BAR_SNX9_like The Bin/ 96.9 0.13 2.7E-06 51.6 19.3 184 12-211 9-194 (199)
273 cd07658 F-BAR_NOSTRIN The F-BA 96.9 0.44 9.6E-06 49.6 23.9 107 24-132 8-118 (239)
274 PLN00188 enhanced disease resi 96.8 0.0049 1.1E-07 71.5 9.8 37 395-431 74-113 (719)
275 cd07649 F-BAR_GAS7 The F-BAR ( 96.8 0.78 1.7E-05 47.4 27.3 109 24-132 8-116 (233)
276 cd07637 BAR_ACAP3 The Bin/Amph 96.8 0.15 3.3E-06 51.2 18.9 184 22-226 3-189 (200)
277 KOG3651 Protein kinase C, alph 96.7 0.14 3.1E-06 52.7 17.8 188 20-215 138-343 (429)
278 cd07673 F-BAR_FCHO2 The F-BAR 96.7 1.1 2.4E-05 47.4 26.2 97 23-120 14-110 (269)
279 cd01223 PH_Vav Vav pleckstrin 96.7 0.012 2.6E-07 52.8 9.1 37 393-429 75-113 (116)
280 cd07610 FCH_F-BAR The Extended 96.6 0.46 1E-05 47.5 21.8 152 24-179 3-156 (191)
281 cd07676 F-BAR_FBP17 The F-BAR 96.6 1.2 2.6E-05 46.7 28.0 162 20-183 4-197 (253)
282 cd07597 BAR_SNX8 The Bin/Amphi 96.6 0.86 1.9E-05 47.6 23.9 135 9-144 17-166 (246)
283 cd07638 BAR_ACAP2 The Bin/Amph 96.6 0.34 7.4E-06 48.5 19.5 183 22-225 3-188 (200)
284 KOG2505 Ankyrin repeat protein 96.5 0.0025 5.5E-08 69.6 4.6 62 753-814 404-471 (591)
285 cd07650 F-BAR_Syp1p_like The F 96.4 0.65 1.4E-05 48.0 21.3 158 21-182 5-172 (228)
286 cd07639 BAR_ACAP1 The Bin/Amph 96.4 0.33 7.2E-06 48.5 18.3 114 22-139 3-117 (200)
287 cd07636 BAR_GRAF The Bin/Amphi 96.4 0.29 6.3E-06 49.1 17.9 126 21-178 2-129 (207)
288 cd07655 F-BAR_PACSIN The F-BAR 96.3 1.5 3.3E-05 46.2 24.0 85 29-113 13-101 (258)
289 KOG1117 Rho- and Arf-GTPase ac 96.3 0.0037 8.1E-08 72.2 4.3 96 291-430 85-180 (1186)
290 cd01232 PH_TRIO Trio pleckstri 96.1 0.062 1.3E-06 48.7 10.6 35 394-428 74-113 (114)
291 PF10456 BAR_3_WASP_bdg: WASP- 96.1 1.1 2.4E-05 46.1 21.0 191 12-212 32-232 (237)
292 smart00248 ANK ankyrin repeats 96.0 0.012 2.6E-07 37.8 4.0 27 740-766 2-28 (30)
293 cd07635 BAR_GRAF2 The Bin/Amph 95.9 0.61 1.3E-05 46.8 17.5 78 21-98 2-82 (207)
294 cd07680 F-BAR_PACSIN1 The F-BA 95.9 2.8 6.1E-05 43.9 24.4 86 25-110 9-98 (258)
295 smart00248 ANK ankyrin repeats 95.9 0.014 3E-07 37.5 4.1 29 772-800 1-29 (30)
296 cd07669 BAR_SNX33 The Bin/Amph 95.9 1.7 3.6E-05 43.2 19.9 186 16-211 7-202 (207)
297 cd07681 F-BAR_PACSIN3 The F-BA 95.7 3.1 6.8E-05 43.5 24.6 86 28-113 12-101 (258)
298 KOG3531 Rho guanine nucleotide 95.6 0.0036 7.8E-08 72.3 0.6 91 294-426 925-1018(1036)
299 cd07657 F-BAR_Fes_Fer The F-BA 95.6 3.4 7.4E-05 42.9 24.2 116 76-204 62-201 (237)
300 cd07603 BAR_ACAPs The Bin/Amph 95.5 1.7 3.8E-05 43.7 19.3 185 21-226 2-189 (200)
301 cd07668 BAR_SNX9 The Bin/Amphi 95.4 1.9 4.1E-05 42.9 18.4 186 16-211 7-202 (210)
302 cd07652 F-BAR_Rgd1 The F-BAR ( 95.4 2.9 6.3E-05 43.4 21.0 157 23-184 7-193 (234)
303 KOG2273 Membrane coat complex 95.2 2.4 5.1E-05 49.5 22.2 93 18-113 278-371 (503)
304 KOG2505 Ankyrin repeat protein 95.2 0.031 6.8E-07 61.4 5.9 53 738-793 428-480 (591)
305 cd07672 F-BAR_PSTPIP2 The F-BA 95.2 4.7 0.0001 42.0 23.4 85 29-114 13-98 (240)
306 cd01225 PH_Cool_Pix Cool (clon 95.2 0.092 2E-06 46.5 7.7 53 375-427 56-109 (111)
307 cd07670 BAR_SNX18 The Bin/Amph 95.1 3.9 8.5E-05 40.6 19.4 181 16-210 7-201 (207)
308 KOG3609 Receptor-activated Ca2 95.0 0.048 1E-06 64.0 6.9 84 711-801 66-159 (822)
309 KOG2856 Adaptor protein PACSIN 94.9 4.1 8.8E-05 43.6 20.0 184 34-225 27-245 (472)
310 cd07633 BAR_OPHN1 The Bin/Amph 94.7 4.1 8.9E-05 40.6 18.5 123 22-145 3-130 (207)
311 cd01228 PH_BCR-related BCR (br 94.7 0.12 2.5E-06 44.4 6.8 29 397-425 63-92 (96)
312 KOG1737 Oxysterol-binding prot 94.7 0.028 6E-07 66.6 4.1 95 295-433 79-174 (799)
313 cd07675 F-BAR_FNBP1L The F-BAR 94.6 6.6 0.00014 40.9 28.5 160 21-181 5-194 (252)
314 PF15406 PH_6: Pleckstrin homo 94.6 0.071 1.5E-06 46.8 5.4 29 396-424 82-110 (112)
315 cd01227 PH_Dbs Dbs (DBL's big 94.2 0.39 8.4E-06 44.7 9.7 37 394-430 80-118 (133)
316 KOG2996 Rho guanine nucleotide 94.2 2.7 5.8E-05 47.5 17.5 39 392-430 474-514 (865)
317 cd07685 F-BAR_Fes The F-BAR (F 94.0 8.2 0.00018 39.3 23.2 65 117-184 132-196 (237)
318 KOG1451 Oligophrenin-1 and rel 93.9 14 0.00031 42.1 22.4 64 166-237 189-252 (812)
319 cd07671 F-BAR_PSTPIP1 The F-BA 93.9 9.4 0.0002 39.8 25.5 88 26-114 10-97 (242)
320 cd07602 BAR_RhoGAP_OPHN1-like 93.9 4.5 9.7E-05 40.8 17.1 41 21-61 2-42 (207)
321 PF15408 PH_7: Pleckstrin homo 93.2 0.045 9.8E-07 45.3 1.5 31 395-425 64-95 (104)
322 cd07604 BAR_ASAPs The Bin/Amph 93.0 12 0.00026 38.2 20.2 117 22-140 3-121 (215)
323 cd07606 BAR_SFC_plant The Bin/ 92.8 11 0.00024 38.0 18.2 40 22-61 2-41 (202)
324 cd07601 BAR_APPL The Bin/Amphi 92.7 13 0.00027 37.9 20.1 42 22-63 3-44 (215)
325 KOG3543 Ca2+-dependent activat 92.7 0.037 8.1E-07 61.9 0.5 97 295-431 466-569 (1218)
326 cd07634 BAR_GAP10-like The Bin 92.4 5.6 0.00012 40.0 15.2 43 23-65 4-46 (207)
327 KOG3891 Secretory vesicle-asso 92.3 18 0.00039 38.5 22.3 143 77-221 108-257 (436)
328 KOG3531 Rho guanine nucleotide 92.2 0.14 3.1E-06 59.7 4.1 45 392-436 809-853 (1036)
329 PF03114 BAR: BAR domain; Int 92.0 14 0.0003 37.6 18.7 41 19-59 24-64 (229)
330 PF15404 PH_4: Pleckstrin homo 91.7 1.4 3E-05 43.5 9.9 24 402-425 160-183 (185)
331 smart00721 BAR BAR domain. 91.6 18 0.0004 37.2 19.6 173 20-202 26-208 (239)
332 cd01248 PH_PLC Phospholipase C 91.1 0.84 1.8E-05 41.6 7.4 33 393-425 78-114 (115)
333 cd07679 F-BAR_PACSIN2 The F-BA 91.0 22 0.00048 37.1 24.7 85 28-112 12-100 (258)
334 cd01231 PH_Lnk LNK-family Plec 90.9 0.99 2.1E-05 39.2 6.9 36 390-425 70-106 (107)
335 cd07641 BAR_ASAP1 The Bin/Amph 90.6 20 0.00044 36.0 18.0 115 23-139 4-120 (215)
336 cd07656 F-BAR_srGAP The F-BAR 90.3 25 0.00054 36.6 20.0 29 114-142 129-157 (241)
337 cd07307 BAR The Bin/Amphiphysi 90.0 20 0.00044 35.0 17.4 137 34-174 6-146 (194)
338 cd07590 BAR_Bin3 The Bin/Amphi 88.5 32 0.0007 35.3 21.0 170 22-209 12-190 (225)
339 PF08458 PH_2: Plant pleckstri 88.3 3.9 8.4E-05 36.5 8.8 38 391-428 67-104 (110)
340 PF06128 Shigella_OspC: Shigel 88.2 1.5 3.2E-05 43.9 6.9 89 741-832 180-278 (284)
341 KOG2070 Guanine nucleotide exc 84.4 77 0.0017 35.7 23.0 49 377-425 355-404 (661)
342 cd07598 BAR_FAM92 The Bin/Amph 84.1 52 0.0011 33.5 22.2 150 20-176 3-155 (211)
343 cd07673 F-BAR_FCHO2 The F-BAR 83.3 66 0.0014 34.1 19.0 108 19-135 35-149 (269)
344 cd01255 PH_TIAM TIAM Pleckstri 81.9 10 0.00022 35.3 8.6 41 391-431 110-158 (160)
345 KOG0517 Beta-spectrin [Cytoske 81.7 0.073 1.6E-06 66.7 -6.6 108 294-433 2300-2415(2473)
346 KOG0248 Cytoplasmic protein Ma 81.5 0.51 1.1E-05 54.0 0.4 100 286-430 252-351 (936)
347 cd05135 RasGAP_RASAL Ras GTPas 80.8 1.6 3.4E-05 47.6 3.8 26 293-318 303-333 (333)
348 PF15405 PH_5: Pleckstrin homo 80.6 2.7 5.8E-05 39.5 4.8 34 393-426 98-134 (135)
349 cd07631 BAR_APPL1 The Bin/Amph 80.4 69 0.0015 32.4 20.1 100 76-188 37-140 (215)
350 cd07648 F-BAR_FCHO The F-BAR ( 80.3 82 0.0018 33.1 18.7 153 18-182 27-197 (261)
351 KOG4302 Microtubule-associated 78.7 1.5E+02 0.0033 35.3 21.1 113 11-129 164-277 (660)
352 KOG4240 Multidomain protein, c 78.3 78 0.0017 39.4 17.0 35 396-430 895-931 (1025)
353 PF06160 EzrA: Septation ring 77.3 1.6E+02 0.0035 34.9 25.2 207 13-226 100-325 (560)
354 cd07599 BAR_Rvs167p The Bin/Am 76.6 92 0.002 31.7 18.4 179 21-208 2-193 (216)
355 cd07677 F-BAR_FCHSD2 The F-BAR 76.4 1E+02 0.0023 32.2 20.1 93 107-199 122-223 (260)
356 cd05394 RasGAP_RASA2 RASA2 (or 75.9 2.6 5.5E-05 45.3 3.5 27 292-318 282-312 (313)
357 KOG4807 F-actin binding protei 75.6 0.068 1.5E-06 56.7 -8.1 51 375-426 63-113 (593)
358 PF06128 Shigella_OspC: Shigel 75.2 5.4 0.00012 40.1 5.3 48 751-798 228-279 (284)
359 cd07614 BAR_Endophilin_A2 The 74.0 1.1E+02 0.0024 31.4 22.8 25 19-43 5-29 (223)
360 KOG0994 Extracellular matrix g 73.2 2.6E+02 0.0056 35.3 20.7 47 15-61 1543-1589(1758)
361 KOG3549 Syntrophins (type gamm 72.7 12 0.00027 39.7 7.4 40 392-431 350-390 (505)
362 cd07651 F-BAR_PombeCdc15_like 72.4 1.2E+02 0.0027 31.2 19.1 42 17-63 26-67 (236)
363 cd07593 BAR_MUG137_fungi The B 71.9 1.2E+02 0.0026 30.9 20.1 81 20-108 6-99 (215)
364 KOG3771 Amphiphysin [Intracell 71.7 1.8E+02 0.0039 32.9 18.8 51 155-213 156-206 (460)
365 cd05134 RasGAP_RASA3 RASA3 (or 70.7 3.5 7.6E-05 44.4 3.0 27 292-318 279-309 (310)
366 cd07686 F-BAR_Fer The F-BAR (F 70.3 1.4E+02 0.003 30.9 26.5 25 118-142 129-153 (234)
367 PRK04778 septation ring format 70.0 2.4E+02 0.0052 33.5 26.5 207 13-227 104-330 (569)
368 KOG1170 Diacylglycerol kinase 69.1 0.33 7.1E-06 56.5 -5.3 36 392-427 59-94 (1099)
369 KOG0592 3-phosphoinositide-dep 68.8 7.5 0.00016 44.3 5.2 87 292-426 450-536 (604)
370 KOG3520 Predicted guanine nucl 68.0 2.6E+02 0.0056 35.5 18.1 42 393-434 684-728 (1167)
371 cd05128 RasGAP_GAP1_like The G 67.8 3.4 7.5E-05 44.7 2.3 28 291-318 284-315 (315)
372 KOG2398 Predicted proline-seri 67.6 2.7E+02 0.0059 33.2 18.0 28 155-182 159-186 (611)
373 PF13805 Pil1: Eisosome compon 66.5 1.8E+02 0.0039 30.7 17.9 95 25-125 54-150 (271)
374 PF09602 PhaP_Bmeg: Polyhydrox 66.0 1.1E+02 0.0024 29.6 11.5 31 11-41 16-46 (165)
375 PRK12495 hypothetical protein; 65.6 3.8 8.3E-05 41.0 1.9 30 508-541 38-67 (226)
376 cd07595 BAR_RhoGAP_Rich-like T 64.8 1.8E+02 0.004 30.3 18.1 30 19-48 13-42 (244)
377 KOG3523 Putative guanine nucle 64.2 2.9E+02 0.0063 32.4 17.6 32 392-423 553-590 (695)
378 cd07632 BAR_APPL2 The Bin/Amph 63.9 1.7E+02 0.0037 29.6 19.8 120 24-146 5-129 (215)
379 PF08397 IMD: IRSp53/MIM homol 63.7 1.8E+02 0.0039 29.7 17.3 88 27-119 2-90 (219)
380 cd07678 F-BAR_FCHSD1 The F-BAR 63.6 2E+02 0.0043 30.3 24.8 36 107-142 121-156 (263)
381 cd07623 BAR_SNX1_2 The Bin/Amp 63.3 1.8E+02 0.004 29.8 22.4 106 25-134 16-124 (224)
382 PF06034 DUF919: Nucleopolyhed 62.3 62 0.0013 25.9 7.7 53 111-169 6-58 (62)
383 PF11929 DUF3447: Domain of un 61.2 14 0.0003 30.8 4.3 47 742-795 8-54 (76)
384 KOG3551 Syntrophins (type beta 60.7 11 0.00025 40.7 4.4 38 395-432 365-406 (506)
385 cd07664 BAR_SNX2 The Bin/Amphi 60.4 2.1E+02 0.0046 29.6 21.3 118 24-145 25-145 (234)
386 PRK11019 hypothetical protein; 60.2 2.8 6E-05 36.0 -0.1 39 511-550 35-75 (88)
387 PF11172 DUF2959: Protein of u 60.1 1.9E+02 0.0041 28.9 16.7 51 96-146 4-58 (201)
388 KOG3551 Syntrophins (type beta 59.3 16 0.00034 39.7 5.2 58 375-432 216-276 (506)
389 TIGR02419 C4_traR_proteo phage 59.1 3.3 7.3E-05 33.2 0.2 33 509-542 28-62 (63)
390 cd07654 F-BAR_FCHSD The F-BAR 58.3 2.5E+02 0.0054 29.7 26.9 93 19-111 3-105 (264)
391 KOG0977 Nuclear envelope prote 58.2 3.6E+02 0.0078 31.5 19.9 230 12-249 139-387 (546)
392 PF00643 zf-B_box: B-box zinc 58.2 7.4 0.00016 28.1 1.9 33 512-544 3-36 (42)
393 cd07591 BAR_Rvs161p The Bin/Am 57.8 2.3E+02 0.005 29.1 21.5 171 21-209 11-189 (224)
394 PF11929 DUF3447: Domain of un 54.7 18 0.00039 30.1 3.9 47 775-830 8-54 (76)
395 KOG1738 Membrane-associated gu 54.0 2.4 5.2E-05 48.7 -1.9 37 292-328 561-599 (638)
396 PF04129 Vps52: Vps52 / Sac2 f 53.9 4.2E+02 0.0091 31.0 22.3 32 13-45 3-34 (508)
397 KOG4236 Serine/threonine prote 52.0 15 0.00032 41.8 3.7 36 392-428 477-524 (888)
398 cd07642 BAR_ASAP2 The Bin/Amph 50.7 2.9E+02 0.0062 28.1 18.3 113 23-140 4-121 (215)
399 PF11781 RRN7: RNA polymerase 50.1 12 0.00026 26.3 1.8 25 512-539 8-32 (36)
400 PF11172 DUF2959: Protein of u 49.9 2.8E+02 0.0061 27.8 20.1 72 152-232 115-188 (201)
401 cd07686 F-BAR_Fer The F-BAR (F 49.9 3.1E+02 0.0068 28.3 25.6 80 51-136 35-121 (234)
402 PF04108 APG17: Autophagy prot 49.7 4.3E+02 0.0094 29.9 16.0 28 111-138 327-354 (412)
403 cd07588 BAR_Amphiphysin The Bi 49.4 3E+02 0.0065 28.0 20.3 49 155-211 138-186 (211)
404 PF04108 APG17: Autophagy prot 47.9 4.6E+02 0.01 29.7 29.6 25 159-183 296-320 (412)
405 COG1283 NptA Na+/phosphate sym 47.1 5.3E+02 0.011 30.1 18.3 74 102-177 349-423 (533)
406 PHA00080 DksA-like zinc finger 47.0 7.3 0.00016 32.2 0.3 33 510-543 29-63 (72)
407 PF03158 DUF249: Multigene fam 46.8 35 0.00075 33.6 4.9 43 745-793 148-190 (192)
408 cd07627 BAR_Vps5p The Bin/Amph 46.4 3.3E+02 0.0073 27.6 22.1 102 21-133 11-115 (216)
409 KOG4424 Predicted Rho/Rac guan 46.4 26 0.00057 40.2 4.6 53 376-428 542-596 (623)
410 PF00320 GATA: GATA zinc finge 46.3 16 0.00034 25.7 1.9 31 515-545 1-33 (36)
411 PF04740 LXG: LXG domain of WX 45.4 3.3E+02 0.0071 27.2 21.6 21 23-43 5-25 (204)
412 PRK13715 conjugal transfer pro 44.3 6.4 0.00014 32.6 -0.4 35 511-545 33-68 (73)
413 cd07611 BAR_Amphiphysin_I_II T 43.8 3.7E+02 0.0079 27.4 19.8 50 155-212 138-187 (211)
414 cd05395 RasGAP_RASA4 Ras GTPas 42.3 17 0.00037 39.7 2.4 25 294-318 302-331 (337)
415 KOG1729 FYVE finger containing 42.3 15 0.00033 39.0 1.9 41 393-433 106-146 (288)
416 KOG1264 Phospholipase C [Lipid 42.2 43 0.00093 40.0 5.5 56 376-431 855-914 (1267)
417 cd07657 F-BAR_Fes_Fer The F-BA 42.2 4.1E+02 0.009 27.5 19.2 12 51-62 35-46 (237)
418 PF08271 TF_Zn_Ribbon: TFIIB z 40.8 18 0.0004 26.4 1.6 24 514-538 2-25 (43)
419 KOG4407 Predicted Rho GTPase-a 40.7 3.6 7.9E-05 50.8 -3.3 109 293-427 923-1041(1973)
420 KOG4460 Nuclear pore complex, 40.5 6.4E+02 0.014 29.2 14.3 78 118-197 568-645 (741)
421 smart00401 ZnF_GATA zinc finge 40.4 28 0.00061 26.7 2.6 36 512-547 3-40 (52)
422 PF01286 XPA_N: XPA protein N- 39.8 12 0.00025 26.0 0.4 27 513-539 4-31 (34)
423 PF14523 Syntaxin_2: Syntaxin- 39.1 92 0.002 27.3 6.3 35 6-40 25-59 (102)
424 cd07659 BAR_PICK1 The Bin/Amph 38.2 4.4E+02 0.0095 26.7 14.6 50 186-235 57-106 (215)
425 PF01258 zf-dskA_traR: Prokary 35.9 5.5 0.00012 27.9 -1.7 29 514-542 5-34 (36)
426 KOG1264 Phospholipase C [Lipid 35.6 36 0.00078 40.6 3.6 36 291-328 473-508 (1267)
427 PF09712 PHA_synth_III_E: Poly 35.0 6E+02 0.013 27.3 25.9 56 128-183 137-192 (293)
428 TIGR00613 reco DNA repair prot 34.6 26 0.00057 36.3 2.3 34 508-541 143-177 (241)
429 PF09325 Vps5: Vps5 C terminal 34.2 5.2E+02 0.011 26.3 20.9 108 21-132 24-134 (236)
430 PRK00085 recO DNA repair prote 33.3 37 0.00079 35.4 3.1 34 508-541 145-179 (247)
431 KOG0994 Extracellular matrix g 33.3 1.1E+03 0.025 30.1 26.9 24 186-209 1643-1666(1758)
432 PF03158 DUF249: Multigene fam 33.3 71 0.0015 31.5 4.7 46 776-829 146-191 (192)
433 PF08580 KAR9: Yeast cortical 33.2 9.7E+02 0.021 29.2 27.0 210 9-219 24-265 (683)
434 KOG1924 RhoA GTPase effector D 33.1 9.8E+02 0.021 29.2 18.3 25 19-43 790-814 (1102)
435 COG1381 RecO Recombinational D 32.8 21 0.00046 37.4 1.3 31 509-539 151-182 (251)
436 KOG4047 Docking protein 1 (p62 32.3 23 0.00049 39.7 1.4 28 292-319 7-35 (429)
437 PF13949 ALIX_LYPXL_bnd: ALIX 32.2 6.4E+02 0.014 26.7 23.3 28 11-38 81-108 (296)
438 cd07171 NR_DBD_ER DNA-binding 31.3 27 0.00059 29.6 1.4 31 511-544 2-32 (82)
439 cd07160 NR_DBD_LXR DNA-binding 31.0 28 0.00061 30.8 1.5 31 511-544 17-47 (101)
440 cd07649 F-BAR_GAS7 The F-BAR ( 30.5 6.3E+02 0.014 26.1 22.5 25 115-139 120-144 (233)
441 cd07173 NR_DBD_AR DNA-binding 30.2 27 0.0006 29.6 1.3 30 512-544 3-32 (82)
442 cd07170 NR_DBD_ERR DNA-binding 30.2 27 0.00058 30.7 1.2 29 513-544 5-33 (97)
443 cd06968 NR_DBD_ROR DNA-binding 29.9 28 0.0006 30.5 1.2 31 511-544 4-34 (95)
444 KOG3973 Uncharacterized conser 29.4 7.7E+02 0.017 26.8 17.4 66 120-185 162-227 (465)
445 PF15518 L_protein_N: L protei 29.1 1.6E+02 0.0035 28.5 6.2 61 130-196 4-64 (183)
446 KOG3507 DNA-directed RNA polym 28.7 30 0.00064 27.0 1.0 27 513-545 21-48 (62)
447 KOG2751 Beclin-like protein [S 28.7 8.8E+02 0.019 27.3 15.3 122 77-206 108-242 (447)
448 KOG2856 Adaptor protein PACSIN 27.9 8E+02 0.017 27.0 11.6 58 115-172 141-207 (472)
449 PF15272 BBP1_C: Spindle pole 27.9 6.3E+02 0.014 25.3 18.6 44 97-144 36-79 (196)
450 KOG4217 Nuclear receptors of t 27.8 24 0.00052 39.2 0.6 32 509-543 266-297 (605)
451 PF14803 Nudix_N_2: Nudix N-te 27.6 21 0.00045 24.8 0.1 30 513-543 1-33 (34)
452 cd07658 F-BAR_NOSTRIN The F-BA 27.3 7.1E+02 0.015 25.8 16.3 118 16-139 25-146 (239)
453 cd07594 BAR_Endophilin_B The B 27.2 7.1E+02 0.015 25.7 18.4 24 157-180 134-157 (229)
454 cd07628 BAR_Atg24p The Bin/Amp 27.0 6.2E+02 0.014 25.0 14.3 51 12-62 9-67 (185)
455 KOG4674 Uncharacterized conser 26.8 1.8E+03 0.038 30.2 23.5 113 114-235 1051-1170(1822)
456 COG1734 DksA DnaK suppressor p 26.2 23 0.0005 32.4 0.1 31 513-543 81-112 (120)
457 PF10764 Gin: Inhibitor of sig 25.7 37 0.00079 25.4 1.1 25 514-539 1-25 (46)
458 KOG0250 DNA repair protein RAD 25.4 1.5E+03 0.032 28.8 27.9 47 153-199 341-388 (1074)
459 PF11365 DUF3166: Protein of u 25.0 1.6E+02 0.0035 25.8 5.0 40 7-46 1-40 (96)
460 KOG0976 Rho/Rac1-interacting s 24.7 1.3E+03 0.029 28.1 26.1 33 9-41 87-119 (1265)
461 PF06160 EzrA: Septation ring 24.6 1.2E+03 0.026 27.5 19.7 27 8-34 155-181 (560)
462 KOG0995 Centromere-associated 24.6 1.2E+03 0.026 27.4 18.2 16 27-42 164-179 (581)
463 cd07163 NR_DBD_TLX DNA-binding 23.9 33 0.00071 29.9 0.6 30 512-544 6-35 (92)
464 PF04136 Sec34: Sec34-like fam 23.9 6.6E+02 0.014 24.2 11.1 28 78-106 61-88 (157)
465 cd06966 NR_DBD_CAR DNA-binding 23.8 37 0.0008 29.7 0.9 28 514-544 2-29 (94)
466 KOG3362 Predicted BBOX Zn-fing 23.8 31 0.00068 32.1 0.5 33 510-543 116-149 (156)
467 cd07617 BAR_Endophilin_B2 The 23.7 8E+02 0.017 25.1 20.0 30 19-48 15-44 (220)
468 PF13119 DUF3973: Domain of un 23.6 35 0.00075 24.2 0.6 13 533-545 2-14 (41)
469 KOG4846 Nuclear receptor [Sign 23.4 42 0.00092 36.8 1.4 31 510-543 130-160 (538)
470 COG2174 RPL34A Ribosomal prote 23.4 44 0.00096 28.6 1.3 35 505-539 27-78 (93)
471 cd07172 NR_DBD_GR_PR DNA-bindi 22.9 46 0.00099 28.0 1.3 29 513-544 3-31 (78)
472 KOG0964 Structural maintenance 22.8 1.6E+03 0.035 28.3 21.6 128 5-134 669-803 (1200)
473 cd07161 NR_DBD_EcR DNA-binding 22.7 47 0.001 28.8 1.4 28 514-544 3-30 (91)
474 KOG0161 Myosin class II heavy 22.6 2.2E+03 0.047 29.8 24.8 43 159-202 1117-1159(1930)
475 PF08687 ASD2: Apx/Shroom doma 22.4 7.1E+02 0.015 26.3 10.1 33 109-141 190-222 (264)
476 PF03604 DNA_RNApol_7kD: DNA d 22.3 35 0.00075 23.4 0.4 22 514-538 2-23 (32)
477 cd07162 NR_DBD_PXR DNA-binding 22.2 49 0.0011 28.5 1.3 28 514-544 1-28 (87)
478 cd07157 2DBD_NR_DBD1 The first 21.7 39 0.00084 29.0 0.6 28 514-544 2-29 (86)
479 smart00030 CLb CLUSTERIN Beta 21.6 4.2E+02 0.0092 26.5 7.7 66 109-174 22-89 (206)
480 cd07169 NR_DBD_GCNF_like DNA-b 21.2 49 0.0011 28.6 1.2 31 511-544 5-35 (90)
481 cd06955 NR_DBD_VDR DNA-binding 21.1 44 0.00094 30.0 0.9 29 513-544 7-35 (107)
482 KOG3727 Mitogen inducible gene 21.1 27 0.00058 39.8 -0.6 52 375-426 402-457 (664)
483 cd07156 NR_DBD_VDR_like The DN 20.9 50 0.0011 27.2 1.1 27 515-544 1-27 (72)
484 TIGR01834 PHA_synth_III_E poly 20.8 1.1E+03 0.024 25.6 19.9 228 10-248 71-319 (320)
485 smart00055 FCH Fes/CIP4 homolo 20.8 4E+02 0.0087 22.3 6.9 43 21-63 9-51 (87)
486 cd07165 NR_DBD_DmE78_like DNA- 20.4 46 0.00099 28.2 0.8 27 515-544 1-27 (81)
487 PRK11637 AmiB activator; Provi 20.4 1.3E+03 0.027 26.2 22.3 11 155-165 116-126 (428)
488 cd06963 NR_DBD_GR_like The DNA 20.2 54 0.0012 27.1 1.2 27 515-544 1-27 (73)
489 PF04782 DUF632: Protein of un 20.0 1.1E+03 0.025 25.5 15.9 40 102-142 82-121 (312)
No 1
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=100.00 E-value=6.5e-89 Score=791.69 Aligned_cols=693 Identities=42% Similarity=0.596 Sum_probs=528.5
Q ss_pred CCcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHH
Q 003309 2 HFNKLDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKF 81 (832)
Q Consensus 2 ~~~~l~DSP~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f 81 (832)
++++++|||+||+++..+|+++..+++.++++++++..++++-..+..+..+|...+..+.....+. .+.+++|.+|
T Consensus 9 ~~e~lkdsp~fr~~~~~~ee~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~~~~d~~~~~~~~---~~~~~~l~~f 85 (785)
T KOG0521|consen 9 AEEFLKDSPQFRSTLDVFEEDAGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGKGLKDLFSLGQDE---EVISETLQKF 85 (785)
T ss_pred hHHHhhcChhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccCc---hhhhhHHHHH
Confidence 4689999999999999999999999999999999999988863333333445555554442211111 1236799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHH
Q 003309 82 TIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSA 161 (832)
Q Consensus 82 ~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~ 161 (832)
+..++|+..+++.|..++++.+..||.+|++.||.++++.||.|++++.+||.++.||.+++|++.+....|.+++|+.+
T Consensus 86 s~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v~~~kk~f~ka~~~~d~a~~k~~~l~k~~~~~~~~e~~~~l~~~ 165 (785)
T KOG0521|consen 86 SKVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEVKELKKLFEKASEEYDLALVKYSRLPKKRRSKVKTEVEEELAAA 165 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHhhHHHHHHHhhhhhhccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766678888899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 162 RSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERM 241 (832)
Q Consensus 162 r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~~~~~~r~~~~~~~~~l~~~~ 241 (832)
|++|+++++||+..++.++.++++++++.+++||++|..||++|++++.+|+||++++..++++++.+++.+++.+.+++
T Consensus 166 r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g~~l~~~m~p~~~~i~~~v~ql~~~~~~e~~am~~~~ 245 (785)
T KOG0521|consen 166 RRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQGEDLLSQMDPYIKKVATYVQQLREESDAEQRAMEQRY 245 (785)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhcccHhHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhcccCCCCCCCCCCCcccccccCcchhhHHHHHhhccCCcceeEEEEEEecCCCCCCCCceeEEEEeCCc
Q 003309 242 QEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRG 321 (832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~ 321 (832)
+++..+++.+..+-. ....|.++ +......+.|||+|+.++..+.|+||||.++ ++
T Consensus 246 q~l~~~~~~~~~~~~--~~~~~~~~---------------------~~~~~~~~~~~l~~k~~~~~~tw~r~~f~~q-~~ 301 (785)
T KOG0521|consen 246 QELRSASNLESRPKS--DSASPSGG---------------------NLKLGYRMEGYLRKKASNASKTWKRRWFSIQ-DG 301 (785)
T ss_pred HHHHHHhhhhhhccc--cccccccc---------------------cccchhhhhhhhhhhcccchhhHHhhhhhhh-cc
Confidence 998877665555411 11122221 1122334689999999888899999999999 55
Q ss_pred eEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccccccccccccccccCCcccCCcceEEEec
Q 003309 322 MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIIS 401 (832)
Q Consensus 322 ~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t 401 (832)
.+.|......... ....++..|+|+..++..+|||||+|++
T Consensus 302 ~l~~~~r~~~~~~---------------------------------------~~~~dL~~csvk~~~~~~drr~CF~iiS 342 (785)
T KOG0521|consen 302 QLGYQHRGADAEN---------------------------------------VLIEDLRTCSVKPDAEQRDRRFCFEIIS 342 (785)
T ss_pred ccccccccccccc---------------------------------------cccccchhccccCCcccccceeeEEEec
Confidence 5554433222100 1336789999998877779999999999
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHHHHHccCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCccccchhhhhhccccccc
Q 003309 402 PTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPT-SPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTS 480 (832)
Q Consensus 402 ~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~ 480 (832)
|+|+|+|||+|+.+..+||.+|+++|..+++...++...+. ...+..+..+++ .+..++ +.
T Consensus 343 ~tks~~lQAes~~d~~~Wi~~i~nsi~s~l~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~s----------------~~ 404 (785)
T KOG0521|consen 343 PTKSYLLQAESEKDCQDWISALQNSILSALNSAFLGQDSTGGRNTQSGHSSSAS--YSTITS----------------AN 404 (785)
T ss_pred CCcceEEecCchhHHHHHHHHHHHHHHHHHhccCcccccccCCCcccccccccc--cccccc----------------cc
Confidence 99999999999999999999999999999988776544321 111111111111 000000 00
Q ss_pred cccccccccccccccccccccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCC
Q 003309 481 AYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVK 560 (832)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~ 560 (832)
...++. .+...++..++..|||..|||||++.|+|+|+|+||++||+|||+||+||||+||||||+||
T Consensus 405 ~s~~~~----------~~~~~~~~~vq~~pgN~~c~Dcg~p~ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD-- 472 (785)
T KOG0521|consen 405 TSRERL----------NKGISVIEEVQSVPGNAQCCDCGAPEPTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLD-- 472 (785)
T ss_pred cccccc----------ccCcchhhhhhcCCchhhhhhcCCCCCchHhhhhchhhHhhccccccccCchhhhhhhhhhh--
Confidence 000000 01122578899999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhchHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcC
Q 003309 561 VWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRK 640 (832)
Q Consensus 561 ~~~~~~~~~~~~~gn~~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~ 640 (832)
.|+++++.+++++||..+|.|||+.+++-. ..+|.+..+...|++||++||+++.|...
T Consensus 473 ~~~~~l~~l~~~lgn~~~N~i~e~~l~~~~---------------------~~~~~~~~~~~~r~~~i~~kyve~~F~~k 531 (785)
T KOG0521|consen 473 VWEPELLLLFKNLGNKYVNEIYEALLPSYD---------------------SSKPTASSSRQAREAWIKAKYVERRFSVK 531 (785)
T ss_pred ccCcHHHHHHHHhCcchhhhhhhccccccc---------------------ccCCCCccchhhhhHhhhcccceeeEeec
Confidence 599999999999999999999999998721 35888888899999999999999999877
Q ss_pred CCCCcc--ccc--------------ccceeehhhhcCchhh-hHhhhhccccccccccchhhh----------hhhhHH-
Q 003309 641 PKDNQY--LHS--------------VAHQIWEGVRTNDKKA-VYRHIVNFEVDVNAVYEQVSC----------ISSLTL- 692 (832)
Q Consensus 641 ~~~~~~--~~~--------------~~~~L~~Av~~~d~~~-v~~lL~~~gadvN~~~~~~~~----------~~~l~~- 692 (832)
.+.... ... -+.+++.++..+.... |..++.....|.+........ ..+.+.
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~h~e~~ 611 (785)
T KOG0521|consen 532 EPQIKRLYLERLLEAIKSILESASASGVQISEGVSGSSREETVYHLIVSTLNDASIRSADFSVPDKSSADGSTTLHYEIL 611 (785)
T ss_pred ccchhhhhhhhhhhhhhhhhhhhhhhhhhHhhccccCCccccceeeeccCcccccccccccccccccccccccccchhhh
Confidence 654431 111 1223333443333333 555554443344443332110 001110
Q ss_pred --H------HHhhhhccccCCCCcccccccccCccccccccccCCCCCCCc--CCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 003309 693 --A------KAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTM--DDLEGCTLLHLACDSADIGMLELLLQY 762 (832)
Q Consensus 693 --~------~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~--~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ 762 (832)
. +.+. ......+.+.+.++.+.. .+.+++. .-..|.|+||.|+..|...++++|+++
T Consensus 612 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ 678 (785)
T KOG0521|consen 612 ECLKLLLFIKELL-VKASSDGECLPRIATALA------------HGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQN 678 (785)
T ss_pred hccccccchHHHH-HHhccCccchhhhhhhhc------------chhhhccchhhhcccchhhhhhccchHHHHHHHHhc
Confidence 0 0000 000011112222221111 1222222 234689999999999999999999999
Q ss_pred CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHH
Q 003309 763 GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVL 824 (832)
Q Consensus 763 gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv 824 (832)
|+++|..|..|+||||.+...|+...+.+|+++|+++++.+.+|.+||++|....+.|...+
T Consensus 679 ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~d~~~l 740 (785)
T KOG0521|consen 679 GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANADIVLL 740 (785)
T ss_pred CCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccccHHHH
Confidence 99999999999999999999999999999999999999999999999999988877443333
No 2
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-60 Score=501.60 Aligned_cols=386 Identities=32% Similarity=0.553 Sum_probs=291.8
Q ss_pred hhHHHHHhhccCCcceeEEEEEEecCCCCC-CCCceeEEEEeCCceEEEEecCCC-----------------CCCCCCCC
Q 003309 278 MIEAVMQSAAKGKVQTIRQGYLSKRSSNLR-GDWKRRFFVLDSRGMLYYYRKQCS-----------------KSSGSGSQ 339 (832)
Q Consensus 278 ~~~~~~~~~~~~~~~~~k~G~L~K~~~~~~-~~WkrRwfvL~~~~~l~yy~~~~~-----------------~~~~~~~~ 339 (832)
..+......+.|+..|+|||.|+||+++.. +.|||.|++|.+||+|.||.+-.+ +.+|....
T Consensus 287 ~~e~~adtigsGRAIPIKQg~LlKrSgk~L~keWKKKYVtlcsnG~LtYh~sL~dYM~niHgKEiDL~~tTikvpGK~pp 366 (749)
T KOG0705|consen 287 ALENHADTIGSGRAIPIKQGMLLKRSGKSLNKEWKKKYVTLCSNGVLTYHPSLGDYMKNIHGKEIDLLRTTIKVPGKRPP 366 (749)
T ss_pred chhhhhhhhcCCcccchhhhhHHHhcchHHHHHHhhhheeeccCcceeecccHHHHHHhcccceeeeeeeeeeccCccCc
Confidence 334455667889999999999999998743 899999999999999999966211 11111111
Q ss_pred C---ccccCcCccCCCcccccccccc-----------CCCCCC----------cccc----ccccccccccccccCCccc
Q 003309 340 L---SSQRNSSELGSGLLSRWLSSHY-----------HGGVHD----------EKSA----ARHTVNLLTSTIKVDADQS 391 (832)
Q Consensus 340 ~---~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~----------~~~~----~~~~i~l~~~~v~~~~~~~ 391 (832)
+ .+....+..-+|++..+-..+. .|++.+ +.++ .++.....+.+.+ .+
T Consensus 367 latsa~ap~Ss~~~NGl~Kdm~~~rSd~Gl~ss~~~Spgsissaittspkl~pPpSp~~nkKkh~RKksTnskh--nd-- 442 (749)
T KOG0705|consen 367 LATSACAPSSSSKSNGLSKDMEPRRSDVGLGSSDCTSPGSISSAITTSPKLHPPPSPHANKKKHSRKKSTNSKH--ND-- 442 (749)
T ss_pred cccccccccccccccccccccccccCCCCCCcccCCCCCCcccccccCccCCCCCCccchhhhhhhhccCCCCC--Cc--
Confidence 1 1112222222223311110000 011111 0000 0111111222222 12
Q ss_pred CCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhh
Q 003309 392 DLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVE 470 (832)
Q Consensus 392 ~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~ 470 (832)
+-.|||+||+.. .+|+|.|.+-||+++||+||+..|-..|+....... . .
T Consensus 443 EEde~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaSlq~cessk~------K---s-------------------- 493 (749)
T KOG0705|consen 443 EEDECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILASLQSCESSKS------K---S-------------------- 493 (749)
T ss_pred cccceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHHHhhhhhhcc------h---h--------------------
Confidence 336999999975 799999999999999999999999777654211000 0 0
Q ss_pred hhhccccccccccccccccccccccccccccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccc
Q 003309 471 EYTSERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHIS 550 (832)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s 550 (832)
+. + +....-.++.|+.++||..|+||+.++|.|||+|+|+++||+|+||||.||+|+|
T Consensus 494 ------~~---------~-------sqsea~a~qairn~rgn~~c~dc~~~n~~wAslnlg~l~cieCsgihr~lgt~lS 551 (749)
T KOG0705|consen 494 ------RL---------T-------SQSEAMALQAIRNMRGNSHCVDCGTPNPKWASLNLGVLMCIECSGIHRNLGTHLS 551 (749)
T ss_pred ------cc---------c-------hhhhHHHHHHHhcCcCCceeeecCCCCcccccccCCeEEEEEchhhhhhhhhhhh
Confidence 00 0 0011235788999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCCCCCHHHHHHHHHhchHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHH
Q 003309 551 KVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHA 630 (832)
Q Consensus 551 ~vrsl~ld~~~~~~~~~~~~~~~gn~~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~ 630 (832)
+||||.|| .|..|++.+|.++||+.||+|||..... ..||.|++.+++||.||+.
T Consensus 552 rvr~LeLD--dWPvEl~~Vm~aiGN~~AN~vWE~~~~G-----------------------~~KPs~~s~REEkErwIr~ 606 (749)
T KOG0705|consen 552 RVRSLELD--DWPVELLKVMSAIGNDLANSVWEGSSQG-----------------------QTKPSPDSSREEKERWIRA 606 (749)
T ss_pred hhhccccc--cCcHHHHHHHHHhhhhHHHHHhhhhccC-----------------------CcCCCccccHHHHHHHHHH
Confidence 99999999 8999999999999999999999995543 4799999999999999999
Q ss_pred HHhhhhhhcCCCCCcccccccceeehhhhcCchhhhHhhhhcccc--ccccccchhhhhhhhHHHHHhhhhccccCCCCc
Q 003309 631 KYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEV--DVNAVYEQVSCISSLTLAKAMLLNEQTSLERSS 708 (832)
Q Consensus 631 KY~~k~fv~~~~~~~~~~~~~~~L~~Av~~~d~~~v~~lL~~~ga--dvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~ 708 (832)
||+++.|..+.+... .+++++|+.|+...|+..++-|| .+|. .||..++
T Consensus 607 KYeqklFLaPl~~te--~~lgqqLl~A~~~~Dl~t~~lLL-Ahg~~~e~~~t~~-------------------------- 657 (749)
T KOG0705|consen 607 KYEQKLFLAPLPCTE--EPLGQQLLRAVAAEDLQTAILLL-AHGSREEVNETCG-------------------------- 657 (749)
T ss_pred HHHHHhhcCCCCCCC--CchHHHHHHHHHHHHHHHHHHHH-hccCchhhhcccc--------------------------
Confidence 999999999998876 78999999999999999887666 6665 3444333
Q ss_pred ccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHH
Q 003309 709 SSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMF 788 (832)
Q Consensus 709 ~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~ 788 (832)
+.+|+|+||+||..|++.+.++|+.+|+|+.++|..|+|+|.||-..|..+|
T Consensus 658 ----------------------------~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec 709 (749)
T KOG0705|consen 658 ----------------------------EGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQEC 709 (749)
T ss_pred ----------------------------CCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHH
Confidence 3479999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCC
Q 003309 789 AKLLLTRGADPR 800 (832)
Q Consensus 789 v~~Ll~~gad~~ 800 (832)
+.+||.+|+...
T Consensus 710 ~d~llq~gcp~e 721 (749)
T KOG0705|consen 710 IDVLLQYGCPDE 721 (749)
T ss_pred HHHHHHcCCCcc
Confidence 999999998643
No 3
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-46 Score=393.48 Aligned_cols=348 Identities=23% Similarity=0.359 Sum_probs=294.3
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC------CCCCCCccccCchH
Q 003309 4 NKLDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG------GHNDPISVAFGGPV 77 (832)
Q Consensus 4 ~~l~DSP~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~------~~~~~~~~~~~~~~ 77 (832)
||..|||+||..+.-+|.+++...+.++.++|.|+.++.++..++.++++|+++|++|.= .++|++.+ +.+
T Consensus 10 d~~ldsp~fre~l~~he~el~~tnkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~i---a~s 86 (812)
T KOG1451|consen 10 DCYLDSPDFRERLKCHEVELDRTNKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFI---ATS 86 (812)
T ss_pred ccccCChHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHH---HHH
Confidence 799999999999999999999999999999999999999999999999999999999842 35666644 489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHH
Q 003309 78 MTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEE 157 (832)
Q Consensus 78 l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~ 157 (832)
|..|+..++++++.|..|.-++...+++||++|+++.|.-.||.||+|||..++|++.|+|++.++.+| ...++|++.|
T Consensus 87 lkefa~ll~~ve~er~~~v~~Ase~li~PlekFRkEqIG~~KE~KkKydKe~ekfy~~LekHLhLSskk-esqlqeAD~Q 165 (812)
T KOG1451|consen 87 LKEFASLLNQVEDERMRMVGNASESLIEPLEKFRKEQIGTLKEEKKKYDKESEKFYQTLEKHLHLSSKK-ESQLQEADAQ 165 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhhhhHHHHhhhhhhhHHHHHHHHHHhccccch-hhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887 6678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 158 LHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAAL 237 (832)
Q Consensus 158 l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~~~~~~r~~~~~~~~~l 237 (832)
++..|++|.+++|+||.+++++|++++|+|||+|++|+++++.|||-|+++.+++.||.++++..+|++|..++....++
T Consensus 166 vd~~r~nFfe~SL~YV~~vQeVQErk~FefVEpllafl~slf~f~h~g~el~qDF~pfk~qlq~s~QnTrn~f~~Tr~E~ 245 (812)
T KOG1451|consen 166 VDTQRKNFFEASLQYVAEVQEVQERKRFEFVEPLLAFLYSLFSFFHVGSELHQDFKPFKDQLQTSVQNTRNNFNATRAEA 245 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHhhhhhHHHHHHHHHHHhhhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766655
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCCCCCCCcccccccCcchhhHHHHHhhccCCcceeEEEEEEecCCC-CCCCCceeEEE
Q 003309 238 NERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSN-LRGDWKRRFFV 316 (832)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~G~L~K~~~~-~~~~WkrRwfv 316 (832)
++.+.++++. |..+ ....+++++||||.+.+. +.++|.|.||+
T Consensus 246 EeLkKkmke~---------------p~e~---------------------k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~ 289 (812)
T KOG1451|consen 246 EELKKKMKES---------------PTED---------------------KRPTPSTKEGYLYMQEKSKIGKSWVKYYCV 289 (812)
T ss_pred HHHHHHHhhC---------------cccc---------------------cCCCCcccceeeeehhhhhccchhhhheeE
Confidence 5554443321 1100 011345689999999754 56799999999
Q ss_pred EeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccccccccccccccccCCcccCCcce
Q 003309 317 LDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFC 396 (832)
Q Consensus 317 L~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~ 396 (832)
...+...+-......++.+. ++ ....+.+..|+ +...++.|+|||
T Consensus 290 Y~retk~~TMvp~~qk~g~k---------------------------~g-------~~~~~~lKsC~-RRktdSIdKRFC 334 (812)
T KOG1451|consen 290 YSRETKIFTMVPANQKTGTK---------------------------MG-------QTATFKLKSCS-RRKTDSIDKRFC 334 (812)
T ss_pred eecccceEEEeecccCCCCc---------------------------CC-------CcceEEehhhc-cCccccccccee
Confidence 98765544333322222111 11 11224444454 456788999999
Q ss_pred EEEecCCc--eEEEEeCCHHHHHHHHHHHHHH
Q 003309 397 FRIISPTK--NYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 397 F~I~t~~r--t~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
|+|.+..| +.++||-||+|+..||+||.++
T Consensus 335 FDve~~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 335 FDVEVEERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred eeeeecccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 99998876 7999999999999999999766
No 4
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=9.7e-40 Score=322.75 Aligned_cols=201 Identities=69% Similarity=1.081 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHH
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
+|..+|++++.|+++++|++|.|+.|+++++.+|.++.+|+.+|.+|+++.+|++.++++|++|.+|+..++||.++++.
T Consensus 2 ~i~~~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~ 81 (202)
T cd07606 2 QLQELEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEV 81 (202)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999998889888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVT 174 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~ 174 (832)
|++++++.+++||++|+++||+.+||.||+|||++.+||+++.||++++|+++++.++|++++|..+|++|++++||||.
T Consensus 82 L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~~l~~~R~~F~~~~ldyv~ 161 (202)
T cd07606 82 LRSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEEDLGTTRSAFETARFDLMN 161 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003309 175 ALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPY 215 (832)
Q Consensus 175 ~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~ 215 (832)
+|+.++.+++|++|++|++||+||++||++||+++.+++||
T Consensus 162 ~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~py 202 (202)
T cd07606 162 RLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLEPY 202 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999986
No 5
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=100.00 E-value=7.9e-39 Score=314.24 Aligned_cols=201 Identities=23% Similarity=0.372 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhh-----C-CCCCCCccccCchHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG-----G-GHNDPISVAFGGPVMTKFTIALR 86 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~-----~-~~~~~~~~~~~~~~l~~f~~~l~ 86 (832)
|+.|..+|.+++.+++.+++|+|.|+.|+++...++.++..|+.+|.+|+ . .++|++. .+.+|.+|+..+.
T Consensus 1 R~~l~~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~---i~~~L~kF~~~l~ 77 (207)
T cd07602 1 RENLHEHEAELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIE---IAESLKEFGRLIE 77 (207)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHH---HHHHHHHHHHHHH
Confidence 78899999999999999999999999999998888899999999999997 2 2556554 3489999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHH
Q 003309 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFE 166 (832)
Q Consensus 87 ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~ 166 (832)
+|+++|+.|+++++..++.||++|+++||+.+|+.||+|||.+.+||+++.||++++|++++..++|++.+|..+|++|+
T Consensus 78 ei~~~r~~L~~q~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~~~~ea~~~l~~~r~~f~ 157 (207)
T cd07602 78 TVEDERDRMLENAEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKENQLQEADAQLDMERRNFH 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003309 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (832)
Q Consensus 167 ~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~ 216 (832)
+++||||.+|+.+|.+++|+||++|++||+||++|||+||+++.+++||+
T Consensus 158 ~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~py~ 207 (207)
T cd07602 158 QASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFKPYL 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999985
No 6
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=1.7e-38 Score=314.90 Aligned_cols=207 Identities=23% Similarity=0.343 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhh-----CCCCCCCccccCchHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG-----GGHNDPISVAFGGPVMTKFTIALRE 87 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~-----~~~~~~~~~~~~~~~l~~f~~~l~e 87 (832)
|..|..+|+++..|++.+++|+|.|+.|+++.+.++.++.+|+.+|.+|. .+.+|++.+ .+|.+|+..++|
T Consensus 1 ~~~l~~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~----~~l~kFs~~l~E 76 (215)
T cd07601 1 RSLLNVFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILV----STLKQFSKVVDE 76 (215)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHH----HHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999983 345666543 589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHH-hHHHHHHHHHHHHHH
Q 003309 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVA-AILEEELHSARSAFE 166 (832)
Q Consensus 88 i~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~-~e~~~~l~~~r~~f~ 166 (832)
|.+++..|++++++.++.||++|+++||+.+|+.||+|||++.+||+++.||++++|+++.+.. .|++++|..+|++|+
T Consensus 77 l~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~~~l~~~R~~F~ 156 (215)
T cd07601 77 LSTMHSTLSSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVNDEVYACRKKQH 156 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998865555 699999999999999
Q ss_pred HHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHH
Q 003309 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH-QMEPYINQVLTYA 223 (832)
Q Consensus 167 ~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~-~l~~~~~~l~~~~ 223 (832)
+++||||.+|+.+|.|++|+||++|++||+||.+|||+||+++. +++||+++++..+
T Consensus 157 ~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf~~~v~~~~ 214 (215)
T cd07601 157 QTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEFLSDINTSV 214 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999997 9999999998765
No 7
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=1.6e-38 Score=315.51 Aligned_cols=199 Identities=28% Similarity=0.464 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-hhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGY-DGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTY 91 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~-~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~ 91 (832)
|++|...|.+++.|++.|+|++|.|+.|+++ |+.| .++.+|+.+|++|+....|.. ..+++|.+|+.++++++++
T Consensus 1 R~~l~~~E~~~~~l~~~l~kl~K~~~~~~~a-g~~~~~a~~~F~~~L~~~~~~~~~d~---~i~~~l~kF~~~l~el~~~ 76 (200)
T cd07603 1 RASLEQVEADVSELETRLEKLLKLCNGMVDS-GKTYVNANSLFVNSLNDLSDYFRDDS---LVQNCLNKFIQALQEMNNF 76 (200)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccCCcH---HHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999996 5555 458999999999998764433 2458999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHH
Q 003309 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFS 171 (832)
Q Consensus 92 ~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld 171 (832)
+..|++++++.++.||++|+++||+.+||.||+||+++.+||++++||++++|+| |..++|++++|+++|++|++++||
T Consensus 77 ~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K-~~~~~Ea~~~L~~~Rk~f~~~sld 155 (200)
T cd07603 77 HTILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSK-PQEAEEATNILTATRSCFRHTALD 155 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 888999999999999999999999
Q ss_pred HHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003309 172 LVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (832)
Q Consensus 172 ~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~ 216 (832)
||.+|+.+|.++++++|++|++||+||++|||+|++++++++||+
T Consensus 156 yv~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~dl~py~ 200 (200)
T cd07603 156 YVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLEDLEPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCcC
Confidence 999999999999999999999999999999999999999999985
No 8
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=100.00 E-value=5.8e-38 Score=306.95 Aligned_cols=201 Identities=20% Similarity=0.338 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhh-----CC-CCCCCccccCchHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG-----GG-HNDPISVAFGGPVMTKFTIALR 86 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~-----~~-~~~~~~~~~~~~~l~~f~~~l~ 86 (832)
|..|+.+|..++.+.+.+++|+|.|+.|+++...++.++++|+.+|.+|+ .. ++|++.+ ..+|.+|+..++
T Consensus 1 r~~l~~~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I---~~~L~kF~~~L~ 77 (207)
T cd07636 1 RERLKSHEAELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICI---ARSLQEFAAVLR 77 (207)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHH---HHHHHHHHHHHH
Confidence 67899999999999999999999999999998888899999999999997 32 5555543 389999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHH
Q 003309 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFE 166 (832)
Q Consensus 87 ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~ 166 (832)
+|+++|+.|+++++..+++||++|+++||+.+||.||+|||.+++||++++|++++++++++..++|++++|..+|++|.
T Consensus 78 ei~~~r~~L~~qa~~~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k~K~~~~eEA~~~L~~~r~~F~ 157 (207)
T cd07636 78 NLEDERTRMIENASEVLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSKKKESQLHEADSQVDLVRQHFY 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999977778889999999999999999
Q ss_pred HHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003309 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (832)
Q Consensus 167 ~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~ 216 (832)
+++||||.+|+.+|.+++||||+.|++||+||++|||+||++++++.||.
T Consensus 158 ~~sLdYV~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~~y~ 207 (207)
T cd07636 158 EVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFSDFK 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999983
No 9
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=6.8e-38 Score=300.77 Aligned_cols=201 Identities=17% Similarity=0.246 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC------CCCCCCccccCchHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG------GHNDPISVAFGGPVMTKFTIALR 86 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~------~~~~~~~~~~~~~~l~~f~~~l~ 86 (832)
|..|+.+|.+|+.+++.|++|+|.|+.++++...++.++++|+.+|.+|.- .++|++.+ ..+|.+|+..+.
T Consensus 1 r~~l~~hE~ele~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I---~~sL~~F~~~L~ 77 (207)
T cd07633 1 RERLKCYEQELERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINI---AESFKEFAELLQ 77 (207)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHH---HHHHHHHHHHHH
Confidence 667999999999999999999999999999877777789999999999853 24555543 479999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHH
Q 003309 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFE 166 (832)
Q Consensus 87 ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~ 166 (832)
+|+++|+.|+++++.+++.||++|+++||+.+||.||+|||.+++||+++.|+++++.++++..++|++.+|...|++|.
T Consensus 78 ~ie~~r~~l~d~aq~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~k~a~~s~k~K~~e~eEA~~~L~~~r~~F~ 157 (207)
T cd07633 78 EVEEERMMMVQNASDLLIKPLENFRKEQIGFTKERKKKFEKDSEKFYSLLDRHVNLSSKKKESQLQEADLQVDKERQNFY 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999777777779999999999999999
Q ss_pred HHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003309 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (832)
Q Consensus 167 ~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~ 216 (832)
+.|||||.+|+.+|.+++||+|++|++||++|++|||+||++++++.||.
T Consensus 158 ~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~~y~ 207 (207)
T cd07633 158 ESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFLPYK 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999983
No 10
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=7.9e-38 Score=306.05 Aligned_cols=199 Identities=24% Similarity=0.314 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC-CCCCCCccccCchHHHHHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG-GHNDPISVAFGGPVMTKFTIALREIGTY 91 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~-~~~~~~~~~~~~~~l~~f~~~l~ei~~~ 91 (832)
|+.|...|.+++.|++.|+||+|.|+.|+++...++.++.+|+.+|.+|+. ..+|+. ++.+|.+|+.++++|.++
T Consensus 1 r~~i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~~D~~----i~~~l~kFs~~l~ei~~~ 76 (200)
T cd07639 1 RAAIEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGPKDPM----MAECLEKFSDGLNHILDS 76 (200)
T ss_pred CchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch----hHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999978888889999999999987 445543 568999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHH
Q 003309 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFS 171 (832)
Q Consensus 92 ~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld 171 (832)
+..|+++++..+++||++|+++||+.+||.||+|||.+.+||+++.|+++++|++ +..++|++++|..+|++|++++||
T Consensus 77 ~~~Ll~~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~~~~~k~k-~~e~~Ea~~~l~~~R~~F~~~~ld 155 (200)
T cd07639 77 HAELLEATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHNAETPRRK-AQEVEEAAAALLGARATFRDRALD 155 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999764 456799999999999999999999
Q ss_pred HHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003309 172 LVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (832)
Q Consensus 172 ~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~ 216 (832)
||.+|+.++.+|+|+||+.|++||+||++|||+||+++++++||+
T Consensus 156 YV~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell~~l~~y~ 200 (200)
T cd07639 156 YALQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEALSALHQYR 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999999999999999999985
No 11
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=2.3e-37 Score=303.40 Aligned_cols=199 Identities=24% Similarity=0.383 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC-CCCCCCccccCchHHHHHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG-GHNDPISVAFGGPVMTKFTIALREIGTY 91 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~-~~~~~~~~~~~~~~l~~f~~~l~ei~~~ 91 (832)
|+.|..+|++++.|++.++|++|.|+.|+++...++.++.+|+.+|.+|.. +.+|. +++++|.+|+..++||+++
T Consensus 1 r~~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~~De----~i~~~l~kF~~~l~ei~~~ 76 (200)
T cd07638 1 RAALEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYSSKDA----VIETSLTKFSDTLQEMINY 76 (200)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCcch----hhHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999977777889999999999964 33444 3568999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHH
Q 003309 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFS 171 (832)
Q Consensus 92 ~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld 171 (832)
++.|+++++..+++||++|+++||+.+||.||+|||.+.+||.++.||++++|+| +..++|++++|..+|++|++++||
T Consensus 77 ~~~L~~q~~~~l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~~k~k-~~e~eEa~~~l~~~r~~F~~~~ld 155 (200)
T cd07638 77 HTILFDQAQRSIKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQVQRNK-QHEVEEATNILTATRKCFRHIALD 155 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccCCcCc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999876 556799999999999999999999
Q ss_pred HHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003309 172 LVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (832)
Q Consensus 172 ~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~ 216 (832)
||.+|+.+|.+|+|+||++|++||+||.+||++||+++++++||+
T Consensus 156 Yv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~py~ 200 (200)
T cd07638 156 YVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELGPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999985
No 12
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=100.00 E-value=2.5e-37 Score=301.86 Aligned_cols=201 Identities=22% Similarity=0.333 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhh------CCCCCCCccccCchHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG------GGHNDPISVAFGGPVMTKFTIALR 86 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~------~~~~~~~~~~~~~~~l~~f~~~l~ 86 (832)
|..|+.+|.+++...+.|++|+|.|+.|++++..++.++.+|+.+|++|+ .+++|++.+ +.++.+|+..++
T Consensus 1 r~~l~~~e~~l~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i---~~~l~~Fs~~l~ 77 (207)
T cd07634 1 RERLQCHEIELERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISI---AQSLKEFARLLI 77 (207)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHH---HHHHHHHHHHHH
Confidence 56789999999999999999999999999998998999999999999998 345565443 478999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHH
Q 003309 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFE 166 (832)
Q Consensus 87 ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~ 166 (832)
+|.+++..|++++++.++.||++|+++||+.+||.||+|||.+++||++++|++++++++++..++|++++|..+|++|+
T Consensus 78 el~~~~~~L~~~~~~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~aleK~l~l~~~kk~~~~~ea~~~l~~~R~~F~ 157 (207)
T cd07634 78 AVEEERRRLIQNANDVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYSILEKHLNLSAKKKESHLQRADTQIDREHQNFY 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003309 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (832)
Q Consensus 167 ~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~ 216 (832)
+++||||.+|+.+|.+++||||+.|++||+||++|||+||+++++++||.
T Consensus 158 ~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~py~ 207 (207)
T cd07634 158 EASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFAPYK 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999983
No 13
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=8.7e-37 Score=301.75 Aligned_cols=198 Identities=26% Similarity=0.435 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch-hHHHHHHHHHHhhCC-CCCCCccccCchHHHHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYD-GDIAFASALETFGGG-HNDPISVAFGGPVMTKFTIALREIGT 90 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~-~~~~f~~~l~~f~~~-~~~~~~~~~~~~~l~~f~~~l~ei~~ 90 (832)
|+.|...|.+|+.|+..|+|++|.|+.|+++ |+.|. +.+.|+.++.+|... ..|.. ...+|.+|+.++++|++
T Consensus 1 r~~~~~~E~~~~~le~~l~kl~K~~~~~~d~-g~~~~~a~~~F~~~l~d~~~~~~gd~~----i~~~L~kF~~~l~ei~~ 75 (200)
T cd07637 1 RATIDEVETDVVEIEAKLDKLVKLCSGMIEA-GKAYATTNKLFVSGIRDLSQQCKKDEM----ISECLDKFGDSLQEMVN 75 (200)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchH----HHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999998 87775 478999999998763 33332 34689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHH
Q 003309 91 YKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARF 170 (832)
Q Consensus 91 ~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sl 170 (832)
++..|+++++..+++||++|+++||+.+||.||+||+++++||+++.|++++++ ++|..++|++++|+++|++|++++|
T Consensus 76 ~~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~-kk~~~l~Ea~~~L~~~Rk~f~~asL 154 (200)
T cd07637 76 YHMILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPR-HKPHEVEEATSTLTITRKCFRHLAL 154 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888774 5667789999999999999999999
Q ss_pred HHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003309 171 SLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (832)
Q Consensus 171 d~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~ 216 (832)
|||.+|+.+|.+|+|+||++|++||+||.+||++||+++++++||+
T Consensus 155 dyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~py~ 200 (200)
T cd07637 155 DYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 9999999999999999999999999999999999999999999985
No 14
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=100.00 E-value=4.5e-36 Score=293.68 Aligned_cols=201 Identities=21% Similarity=0.306 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhh-----CCCCCCCccccCchHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG-----GGHNDPISVAFGGPVMTKFTIALRE 87 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~-----~~~~~~~~~~~~~~~l~~f~~~l~e 87 (832)
|..|+.+|..++.+.+.|++|+|.|+.|+++...++.++.+|+.+|.+|+ ....|.. ...+.+|.+|+..+.+
T Consensus 1 r~~~~~~e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde--~~i~~sl~ef~~~~~e 78 (207)
T cd07635 1 RERIRAHEAELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDE--RCIDASLQEFSNFLKN 78 (207)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchh--HHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999998998899999999999997 3333322 1247899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHH
Q 003309 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQ 167 (832)
Q Consensus 88 i~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~ 167 (832)
+.+.+..|+.+++..++.||++|+++||+.+++.||+|||.+++||+++.||+++++++++..++|++.+|..+|++|++
T Consensus 79 l~d~r~~L~~~~~~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~EA~~~l~~~r~~F~~ 158 (207)
T cd07635 79 LEEQREIMALNVTETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEPQLQEADVQVEQNRQHFYE 158 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998666555789999999999999999
Q ss_pred HHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003309 168 ARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPY 215 (832)
Q Consensus 168 ~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~ 215 (832)
++||||.+|+.+|.+++|+||++|++||+||.+|||+||+++++++||
T Consensus 159 ~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~~y 206 (207)
T cd07635 159 LSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFNHY 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999998
No 15
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-37 Score=321.79 Aligned_cols=211 Identities=34% Similarity=0.579 Sum_probs=188.3
Q ss_pred CCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHHHHHHHhhhccc
Q 003309 510 CGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSR 589 (832)
Q Consensus 510 ~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~n~~~e~~~~~~ 589 (832)
.....|+|||.++|.|+|+|-|+++|.+|..+||+||.|||.||+|.-. .|+|+.+.++..+.|..+|+|||+.+-+.
T Consensus 6 l~~evC~DC~~~dp~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s--~W~pt~l~~V~tLn~~gaNsIWEh~Lld~ 83 (669)
T KOG0818|consen 6 LSSEVCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHT--PWPPTLLQMVETLNNNGANSIWEHSLLDP 83 (669)
T ss_pred hhhhhhcccCCCCCcceeecCceEehHhhhHHHhhhcchHHHHHHhccC--CCCHHHHHHHHHHHhcCcchhhhhhccCc
Confidence 4557999999999999999999999999999999999999999999987 89999999999999999999999999875
Q ss_pred cccccCCCCCCCCCCCcccccccCCCCCCCCHH-HHHHHHHHHHhhhhhhcCCCCC-c---ccccccceeehhhhcCchh
Q 003309 590 SAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSIS-VKEKFIHAKYAEKLFVRKPKDN-Q---YLHSVAHQIWEGVRTNDKK 664 (832)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~-~re~~I~~KY~~k~fv~~~~~~-~---~~~~~~~~L~~Av~~~d~~ 664 (832)
+..+. ++.||.|.+... .+++||++||+...|+...+.. . -..++.++|+..++.++.+
T Consensus 84 st~~s----------------g~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~~~~~rDdD~~~~~~LsrQLhasvRt~nle 147 (669)
T KOG0818|consen 84 ATIMS----------------GRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSVTAKDLSKQLHSSVRTGNLE 147 (669)
T ss_pred hhhhc----------------ccCCCCCcCCCCccHHHHHHHHHHheeeeccCCCCCcchhhHHHHHHHHHHHhhcccHH
Confidence 54432 368999998875 8999999999999999854322 2 2367889999999999999
Q ss_pred hhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHH
Q 003309 665 AVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLL 744 (832)
Q Consensus 665 ~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpL 744 (832)
..+++| ..|||+|..+++ .|.|||
T Consensus 148 t~LRll-~lGA~~N~~hpe-------------------------------------------------------kg~TpL 171 (669)
T KOG0818|consen 148 TCLRLL-SLGAQANFFHPE-------------------------------------------------------KGNTPL 171 (669)
T ss_pred HHHHHH-HcccccCCCCcc-------------------------------------------------------cCCchh
Confidence 999998 789999986554 489999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 003309 745 HLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 794 (832)
Q Consensus 745 h~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~ 794 (832)
|.|+..|+..-+++|+-+|||+++.|.+|.||+.+|-..||-++.+-|++
T Consensus 172 HvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e 221 (669)
T KOG0818|consen 172 HVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVE 221 (669)
T ss_pred HHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999888776654
No 16
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=100.00 E-value=3.4e-34 Score=277.54 Aligned_cols=207 Identities=21% Similarity=0.329 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC-----CCCCCCccccCchHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG-----GHNDPISVAFGGPVMTKFTIALRE 87 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~-----~~~~~~~~~~~~~~l~~f~~~l~e 87 (832)
|..+..||++...+.++..++.+.+..+..++++.+.++.+|+..|.+|.. ..+|.+ ...+|.+|+..+.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ls~a~~~~~~~l~~~~~~~f~~~~dDe~----i~~~L~kFs~~L~E 76 (215)
T cd07631 1 RSLLGVFEEDAAAISNYFNQLFQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEV----MSSTLQQFSKVIDE 76 (215)
T ss_pred CcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHH----HHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999862 234443 34799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHH-hHHHHHHHHHHHHHH
Q 003309 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVA-AILEEELHSARSAFE 166 (832)
Q Consensus 88 i~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~-~e~~~~l~~~r~~f~ 166 (832)
+++++..|+++++..++.||++|+++||+.+||.||+|||.+++||+++.||++++|+|+++.. .|++.++..+|++|+
T Consensus 77 l~~~~~~L~~q~~~sl~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~~F~ 156 (215)
T cd07631 77 LSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRKKQH 156 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999866 468889999999999
Q ss_pred HHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHH
Q 003309 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYE-LLHQMEPYINQVLTYA 223 (832)
Q Consensus 167 ~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~-~~~~l~~~~~~l~~~~ 223 (832)
+++||||.+|+.+|.||+++||++|++||+||.+|||+||+ +.++++||++++...+
T Consensus 157 ~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~f~~~l~~~~ 214 (215)
T cd07631 157 QTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLTNIGTSV 214 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999 6679999999998765
No 17
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=100.00 E-value=1.3e-33 Score=271.59 Aligned_cols=203 Identities=22% Similarity=0.324 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh-HHHHHHHHHHhhCCC--CCCCccccCchHHHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDG-DIAFASALETFGGGH--NDPISVAFGGPVMTKFTIALREIG 89 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~-~~~f~~~l~~f~~~~--~~~~~~~~~~~~l~~f~~~l~ei~ 89 (832)
|.+|..+|+.++.++..|+|++|.|+.++++ |..|.. +.+|+.+|++++... .|.. ..+.+|.+|+..++|+.
T Consensus 1 r~tv~~~ee~l~~~e~~L~Kl~K~~kam~~S-G~~yv~n~~~f~~~l~~Lg~~~~~~dd~---~i~~a~~kfs~~~~El~ 76 (215)
T cd07641 1 RNTVNVLEEALDQDRTALQKVKKSVKAIYNS-GQDHVQNEENYAQALDKFGSNFLSRDNP---DLGTAFVKFSTLTKELS 76 (215)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCCch---hHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999997 777764 689999999999854 3332 24589999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhHHHH-HHHHHHHHHhHHHHHHHHHHHhccc--CCchhHHh------HHHHHHHH
Q 003309 90 TYKEVLRSQVEHMLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKFLSLRK--GTKTDVAA------ILEEELHS 160 (832)
Q Consensus 90 ~~~~~l~~~~~~~~~~pL~~f~~~di~~~k-e~rk~fek~~~~yd~al~k~~~~~k--~k~~~~~~------e~~~~l~~ 160 (832)
+++..|++++++.+..||++|+|+||+.+| |.||.|||++++||+++.|..+.+| .|+.+..+ |++++|..
T Consensus 77 ~~~k~L~~~~~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r~e~~~~Eaa~~l~~ 156 (215)
T cd07641 77 TLLKNLLQGLSHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREHAKQHGMIRTEITGAEIAEEMEK 156 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcccchhccccchhHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999988 66666544 89999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003309 161 ARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQV 219 (832)
Q Consensus 161 ~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l 219 (832)
.|++|++.++||+.+|++++.|+++++|+.|++||+||.+||++|+++++++.||++.+
T Consensus 157 ~Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~k~l 215 (215)
T cd07641 157 ERRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999864
No 18
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-36 Score=300.67 Aligned_cols=116 Identities=46% Similarity=0.837 Sum_probs=108.3
Q ss_pred cccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHH
Q 003309 499 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA 578 (832)
Q Consensus 499 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~ 578 (832)
++..+..|.+.|+|.+|||||++.|+|||.|||||||+.|+||||+||||||||+|++|| .|++|+|+.|..+||..|
T Consensus 12 ~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD--~W~~eqv~~m~~~GN~~a 89 (287)
T KOG0703|consen 12 NKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLD--EWTDEQVDFMISMGNAKA 89 (287)
T ss_pred HHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeecc--ccCHHHHHHHHHHcchhh
Confidence 456788899999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCC
Q 003309 579 NSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKP 641 (832)
Q Consensus 579 n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~ 641 (832)
|++||+.+|.. ..+|.+++ .+|.|||+||+.++|+.+.
T Consensus 90 n~~~ea~~p~~----------------------~~~p~~d~---~~e~FIR~KYE~kkf~~~~ 127 (287)
T KOG0703|consen 90 NSYYEAKLPDP----------------------FRRPGPDD---LVEQFIRDKYERKKFLDPE 127 (287)
T ss_pred hhhccccCCcc----------------------ccCCChHH---HHHHHHHHHHhhhhhccch
Confidence 99999998873 46777766 7999999999999999875
No 19
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=100.00 E-value=1.3e-32 Score=263.51 Aligned_cols=206 Identities=19% Similarity=0.293 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC-----CCCCCCccccCchHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG-----GHNDPISVAFGGPVMTKFTIALRE 87 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~-----~~~~~~~~~~~~~~l~~f~~~l~e 87 (832)
|..+..||++...+.++..++.+.++.+..+.++.+.++...+.-|.+|.. +.+|.. ...+|.+|+..+.+
T Consensus 1 ~~l~~v~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~s~~l~~~~~~~~~~~~~D~~----v~~sL~kFs~~L~e 76 (215)
T cd07632 1 RSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEE----VISTLQYFAKVVDE 76 (215)
T ss_pred CcHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHH----HHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999998888888877743 334443 23689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhH-HHHHHHHHHHHHH
Q 003309 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAI-LEEELHSARSAFE 166 (832)
Q Consensus 88 i~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e-~~~~l~~~r~~f~ 166 (832)
|+++|..|+++++.+++.||++|+++||+.+||.||.|||.+++||+|+.||++++|+|+.+..++ +..+|..+|++|+
T Consensus 77 l~~~h~~L~dqaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~KnaqlskkK~~E~~eae~~~~l~~sRr~F~ 156 (215)
T cd07632 77 LNVLHSELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLPKKRENEKVKAEVAKEVAYSRRKQH 156 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987665433 4457999999999
Q ss_pred HHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Q 003309 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELL-HQMEPYINQVLTY 222 (832)
Q Consensus 167 ~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~-~~l~~~~~~l~~~ 222 (832)
++|||||.+||.+|.||+|++|++|++||+||.+|||+||+++ .+++.|+.++.+.
T Consensus 157 ~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~~~~~~~~~~~~~~~ 213 (215)
T cd07632 157 LSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINFFKKGAELFSKKLDSFLSSVSDM 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999 5688888887654
No 20
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=100.00 E-value=4.3e-32 Score=271.46 Aligned_cols=206 Identities=23% Similarity=0.336 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYK 92 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~ 92 (832)
|.+|..+|+.++.++..|+|+.|.|+.|+++...++.++.+|+++|++|++...+..++ ..+.+|.+|+..++|+.+++
T Consensus 1 r~~v~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~-~i~~~l~kF~~~l~El~~~~ 79 (215)
T cd07604 1 RNTVGALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEE-DLGAAFLKFSVFTKELAALF 79 (215)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccH-HHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999975555677899999999999865332222 24578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHHH-HHHHHHHHHhHHHHHHHHHHHhcccCC-------chhH-HhHHHHHHHHHHH
Q 003309 93 EVLRSQVEHMLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKFLSLRKGT-------KTDV-AAILEEELHSARS 163 (832)
Q Consensus 93 ~~l~~~~~~~~~~pL~~f~~~di~~~k-e~rk~fek~~~~yd~al~k~~~~~k~k-------~~~~-~~e~~~~l~~~r~ 163 (832)
..|+++++++++.||++|+++||+.++ |.||+|||++.+||.+..+..+.++.. .++. ..|++++|..+|+
T Consensus 80 ~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~~~l~~~R~ 159 (215)
T cd07604 80 KNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTEITGAEIAEEMEKERR 159 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999998 999999999999999987766554431 1111 2578899999999
Q ss_pred HHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003309 164 AFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQV 219 (832)
Q Consensus 164 ~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l 219 (832)
.|+++++|||.+|+.++.+++++||+++++||+||++||++|++++++++||++++
T Consensus 160 ~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~~~L 215 (215)
T cd07604 160 MFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999864
No 21
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=100.00 E-value=6.6e-34 Score=259.29 Aligned_cols=114 Identities=48% Similarity=0.908 Sum_probs=95.5
Q ss_pred cHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHHHH
Q 003309 501 KPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANS 580 (832)
Q Consensus 501 ~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~n~ 580 (832)
+.++.|++.|+|+.|||||+++|+|+|+|||||||+.|+|+||+||+|+|+||||+|| .|++++|+.|+.+||..+|+
T Consensus 2 ~~l~~l~~~~~N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d--~w~~~ev~~~~~~GN~~~n~ 79 (116)
T PF01412_consen 2 KILRELLKKPGNKVCADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMD--NWSPEEVQRMREGGNKRANS 79 (116)
T ss_dssp HHHHHHHCSTTCTB-TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS-----HHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHcCcCcCcCCCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhccccccC--CCCHHHHHHHHHHChHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhc
Q 003309 581 VWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVR 639 (832)
Q Consensus 581 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~ 639 (832)
+||+..++ ..+|.+.++...++.||+.||+++.|+.
T Consensus 80 ~~e~~~~~-----------------------~~~~~~~~~~~~~~~fI~~KY~~k~f~~ 115 (116)
T PF01412_consen 80 IWEANSPP-----------------------PKKPPPSSDQEKREQFIRAKYVEKAFIS 115 (116)
T ss_dssp HHTTTSTT-----------------------TTTHCTTSHHHHHHHHHHHHHTTHTTS-
T ss_pred HHHcCCCC-----------------------CCCCCCCCcHHHHHHHHHHHHHhhhhcc
Confidence 99998332 3577788888999999999999999975
No 22
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=99.98 E-value=1.6e-32 Score=248.19 Aligned_cols=109 Identities=59% Similarity=0.982 Sum_probs=99.5
Q ss_pred CCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHHHHHHHhhhccc
Q 003309 510 CGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSR 589 (832)
Q Consensus 510 ~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~n~~~e~~~~~~ 589 (832)
|||+.|||||+++|+|+|+|||||||++|||+||+||+|||+||||+|| .|++++|++|+.+||..+|++||+.+++.
T Consensus 1 ~~N~~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md--~w~~~~i~~~~~~GN~~~n~~~e~~~~~~ 78 (112)
T smart00105 1 PGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLD--TWTEEELRLLQKGGNENANSIWESNLDDF 78 (112)
T ss_pred CCCCcccCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccC--CCCHHHHHHHHHhhhHHHHHHHHhhCCcc
Confidence 6899999999999999999999999999999999999999999999999 79999999999999999999999999862
Q ss_pred cccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCCC
Q 003309 590 SAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPK 642 (832)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~~ 642 (832)
..+|.+.+....++.||+.||+++.|+...+
T Consensus 79 ----------------------~~~~~~~~~~~~~~~fI~~KY~~k~f~~~~~ 109 (112)
T smart00105 79 ----------------------SLKPPDSDDQQKYESFIAAKYEEKLFVPPES 109 (112)
T ss_pred ----------------------ccCCCCCchHHHHHHHHHHHHHhhhcccccc
Confidence 1344445567899999999999999987754
No 23
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=99.97 E-value=1.3e-30 Score=253.15 Aligned_cols=203 Identities=22% Similarity=0.332 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh-HHHHHHHHHHhhCC--CCCCCccccCchHHHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDG-DIAFASALETFGGG--HNDPISVAFGGPVMTKFTIALREIG 89 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~-~~~f~~~l~~f~~~--~~~~~~~~~~~~~l~~f~~~l~ei~ 89 (832)
|.+|..+|+.++..+..|.|+-|.++.++++ |..|.. +.+|+++|++++.. ..|.. ..+.+|.+|+..++|+.
T Consensus 1 ~~~~~~~ee~l~~d~~~l~~~kk~~k~~~~s-G~~yv~~~~~f~~~L~~LG~~~l~~dd~---~~~~~l~kf~~~~~El~ 76 (215)
T cd07642 1 RNTVVAIEEALDVDRTVLYKMKKSVKAIHTS-GLAHVENEEQYTQALEKFGSNCVCRDDP---DLGSAFLKFSVFTKELT 76 (215)
T ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccCCCcH---HHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999997 777764 68999999999984 32322 24689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhHHHH-HHHHHHHHHhHHHHHHHHHHHhccc--CCchhHH------hHHHHHHHH
Q 003309 90 TYKEVLRSQVEHMLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKFLSLRK--GTKTDVA------AILEEELHS 160 (832)
Q Consensus 90 ~~~~~l~~~~~~~~~~pL~~f~~~di~~~k-e~rk~fek~~~~yd~al~k~~~~~k--~k~~~~~------~e~~~~l~~ 160 (832)
+++..|++++++++..||++|+++||+.+| |.||.||+.+++||+++.|..+.++ .|+.+.. .|++++|..
T Consensus 77 ~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~ 156 (215)
T cd07642 77 ALFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIEKEKKEHAKMHGMIRTEISGAEIAEEMEK 156 (215)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccchhccchhhHHHHHHH
Confidence 999999999999999999999999999998 9999999999999999999888876 4444433 688899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003309 161 ARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQV 219 (832)
Q Consensus 161 ~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l 219 (832)
+|++|++.++||+.+|+.++.++++++|..+++|++||.+||++|++++++++||++.+
T Consensus 157 ~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~~~l 215 (215)
T cd07642 157 ERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999863
No 24
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=99.97 E-value=3.9e-30 Score=243.13 Aligned_cols=206 Identities=17% Similarity=0.232 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYK 92 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~ 92 (832)
|.++..+|+.++..+..|.++-|.|+.++.+-..+...+.+|+++|+.||...-....+ .+|..+.+|+...+|+..+.
T Consensus 1 r~tv~~lee~le~d~~~L~k~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l~~~~~-~~~t~fl~~av~tkel~al~ 79 (213)
T cd07640 1 RSTAAALEESLEGDQASLQRIKKIVKAIHNSGLNHVENEEQYTEALENLGNSHLSQNNH-ELSTGFLNLAVFTREVTALF 79 (213)
T ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhhcCCCc-HHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999988863334445689999999999753221122 25678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHHH-HHHHHHHHHhHHHHHHHHHHHhcccCCchh------HHhHHHHHHHHHHHHH
Q 003309 93 EVLRSQVEHMLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKFLSLRKGTKTD------VAAILEEELHSARSAF 165 (832)
Q Consensus 93 ~~l~~~~~~~~~~pL~~f~~~di~~~k-e~rk~fek~~~~yd~al~k~~~~~k~k~~~------~~~e~~~~l~~~r~~f 165 (832)
..|++++++.+.-||++|+|+||+.+| |.||.|||++++||+++.|..+.+|.+.-+ ...|+++++...|++|
T Consensus 80 k~L~qn~nniv~fpldsflK~dlr~~K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~~e~eEaae~l~~eRr~F 159 (213)
T cd07640 80 KNLVQNLNNIVSFPLDSLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLEKERREKQKQHGLIRLDMTDTAEDMQRERRNF 159 (213)
T ss_pred HHHHHhhhhhhccchHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHhccccccchhcccccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 999999999999999999999998877522 2478899999999999
Q ss_pred HHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003309 166 EQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQV 219 (832)
Q Consensus 166 ~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l 219 (832)
++.++||+.+++++|.|+++++|+.|++||+||.+|||+|+++++++.||++++
T Consensus 160 ql~acdYllkin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~pyik~l 213 (213)
T cd07640 160 QLHMCEYLLKAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGPFIEKL 213 (213)
T ss_pred HHHHHHHHHHHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 999999999999999999999999999999999999999999999999999864
No 25
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=1.8e-31 Score=294.74 Aligned_cols=261 Identities=30% Similarity=0.453 Sum_probs=210.4
Q ss_pred CCcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCC
Q 003309 289 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD 368 (832)
Q Consensus 289 ~~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (832)
+..+|.+.|||.-|+-+ .|-|.+|. .+.+.-|++..+-+.|. ||
T Consensus 188 pp~pP~raG~lelrg~k-----ak~f~~vs-p~~vqL~knlq~f~lgi---------------gi--------------- 231 (1186)
T KOG1117|consen 188 PPVPPPRAGWLELRGFK-----AKLFVAVS-PERVQLYKNLQSFPLGI---------------GI--------------- 231 (1186)
T ss_pred CCCCCCCccchhccccc-----cceeEEec-CceeeeecccccccCCc---------------ee---------------
Confidence 34568899999988322 23555666 56666667765543332 11
Q ss_pred ccccccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCC
Q 003309 369 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMGSG 448 (832)
Q Consensus 369 ~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~~~~~~~~~~~~~~~ 448 (832)
.-|.+..++|+.. ++ ..|+++||.|.|-|.|+++.+++.|++|+|.+|+..++..
T Consensus 232 ------t~I~m~~~nvk~v----dr-~sfdl~Tp~r~fsftaese~erq~w~ea~q~siAeTlSd~-------------- 286 (1186)
T KOG1117|consen 232 ------TFIYMEVSNVKEV----DR-RSFDLNTPYREFSFTAESETERQIWGEAPQPSIAETLSDY-------------- 286 (1186)
T ss_pred ------EEEeccccccccc----cc-ceeccCCceeeeeeeeccchhhhhhhhccCcccccccChH--------------
Confidence 2356667777642 33 4599999999999999999999999999998887554320
Q ss_pred CCCCCCCCCCCCCCccccchhhhhhccccccccccccccccccccccccccccHHHHHHccCCCCccccCCCCCCCeeec
Q 003309 449 HHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASL 528 (832)
Q Consensus 449 ~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~ 528 (832)
..-+.+.....|..|||||++.|+|||+
T Consensus 287 ----------------------------------------------------evaeriW~ne~nr~cadC~ssrPdwasi 314 (1186)
T KOG1117|consen 287 ----------------------------------------------------EVAERIWLNEENRECADCGSSRPDWASI 314 (1186)
T ss_pred ----------------------------------------------------HHHHHHHhccccccccccCCCCCccccc
Confidence 1225577888999999999999999999
Q ss_pred ccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHHHHHHHhhhccccccccCCCCCCCCCCCccc
Q 003309 529 NLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQ 608 (832)
Q Consensus 529 n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (832)
||+++||-.|+|-||+||.-+|||||++||...|+.+.+++|..+||.++|++|-+++++++..+.+
T Consensus 315 NL~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivlgn~~an~Fwa~nl~~~e~lh~d------------- 381 (1186)
T KOG1117|consen 315 NLCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVLGNPRANRFWAGNLPPNEHLHPD------------- 381 (1186)
T ss_pred ccceEEcccCCCccccCCCccccccccccCcccccchhhhhheeecCcccccccccCCCCccccCCC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999987654443
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCCCCCcccccccceeehhhhcCchhhhHhhhhccccccccccchhhh
Q 003309 609 LLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSC 686 (832)
Q Consensus 609 ~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~~~~~~~~~~~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~ 686 (832)
++...|..||..||....|....+......++..+|+.||..-|+..-..+| -.|++|++..+++..
T Consensus 382 ----------ssp~~r~~fi~~Kykeg~fRk~~~~~~~~sel~kalcaaV~~pdl~etma~l-~sga~v~~f~gd~~~ 448 (1186)
T KOG1117|consen 382 ----------SSPSTRRQFIKEKYKEGKFRKEHPVEICSSELPKALCAAVNVPDLLETMALL-FSGADVMCFTGDPVH 448 (1186)
T ss_pred ----------CCcchhhhHHHHHhhccccccccccccccccCChhheeeeeCCchhhHHHHh-hccccceeecCCCCC
Confidence 3445699999999999999999888777788899999999999988777776 469999987666533
No 26
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.4e-30 Score=272.62 Aligned_cols=118 Identities=45% Similarity=0.791 Sum_probs=106.2
Q ss_pred ccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHHH
Q 003309 500 EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFAN 579 (832)
Q Consensus 500 ~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~n 579 (832)
...+..|+..++|+.|||||+++|+|+|+||||||||+||||||+|||||||||||+|| .|++++++.|...||..||
T Consensus 8 ~~~l~~l~~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD--~wt~~~l~~m~~gGN~~a~ 85 (319)
T COG5347 8 RKLLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLD--NWTEEELRRMEVGGNSNAN 85 (319)
T ss_pred HHHHHHHhhccccCccccCCCCCCceEecccCeEEEeecchhhhccccceeeeeeeecc--cCCHHHHHHHHHhcchhhh
Confidence 45778899999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcC
Q 003309 580 SVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRK 640 (832)
Q Consensus 580 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~ 640 (832)
++||.+..... ..+........++++||+.||..+.|+..
T Consensus 86 ~~~e~~~~~~~---------------------~~~~k~~yd~~v~~~y~~~ky~~~~~~~~ 125 (319)
T COG5347 86 RFYEKNLLDQL---------------------LLPIKAKYDSSVAKKYIRKKYELKKFIDD 125 (319)
T ss_pred hHhccCCCccc---------------------ccccccccCHHHHHHHHHHHHHhhhcccc
Confidence 99998776410 13445566677899999999999999976
No 27
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=99.95 E-value=2.5e-28 Score=262.30 Aligned_cols=121 Identities=21% Similarity=0.449 Sum_probs=106.3
Q ss_pred ccccccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhch
Q 003309 496 CVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGN 575 (832)
Q Consensus 496 ~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn 575 (832)
..+++++++.|++.|||+.|+|||..+|.|||+|||||||++||||||+|| +|||||+|| .|++++|++|+.+||
T Consensus 7 qERnekILreLlklPgNk~CADCgs~~P~WASiNlGIFICi~CSGIHRsLG---hRVKSLSLD--kWT~EEVe~Mk~gGN 81 (648)
T PLN03119 7 EERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT---HRVKSVSMS--KFTSKEVEVLQNGGN 81 (648)
T ss_pred HHHHHHHHHHHhhCcCCCccccCCCCCCCceeeccceEEeccchhhhccCC---ceeeccccC--CCCHHHHHHHHHhch
Confidence 445788899999999999999999999999999999999999999999998 599999999 899999999999999
Q ss_pred HHHHHHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCCCC
Q 003309 576 AFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKD 643 (832)
Q Consensus 576 ~~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~~~ 643 (832)
.++|++||+++++.. .++.+......++.||+.||++|+|+.....
T Consensus 82 ~~AN~iyeanw~~~~----------------------~~~P~~sD~e~lr~FIR~KYVeKRF~~~~~~ 127 (648)
T PLN03119 82 QRAREIYLKNWDHQR----------------------QRLPENSNAERVREFIKNVYVQKKYAGANDA 127 (648)
T ss_pred HHHHHHHHhhccccc----------------------CCCCCCccHHHHHHHHHHHHhhhhccCcCCC
Confidence 999999999987621 2223334456778999999999999987654
No 28
>PLN03131 hypothetical protein; Provisional
Probab=99.95 E-value=5.7e-28 Score=261.61 Aligned_cols=121 Identities=21% Similarity=0.453 Sum_probs=105.8
Q ss_pred ccccccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhch
Q 003309 496 CVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGN 575 (832)
Q Consensus 496 ~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn 575 (832)
..+++++++.|++.|+|+.|+|||+++|.|||+|||||||++||||||+|| +|||||+|| .|+.++|+.|+.+||
T Consensus 7 qErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLg---hRVKSVTLD--~WtdeEV~~Mk~gGN 81 (705)
T PLN03131 7 EERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFT---HRVKSVSMS--KFTSQDVEALQNGGN 81 (705)
T ss_pred HHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccC---cccccccCC--CCCHHHHHHHHHhcc
Confidence 445778899999999999999999999999999999999999999999997 499999999 899999999999999
Q ss_pred HHHHHHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCCCC
Q 003309 576 AFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKD 643 (832)
Q Consensus 576 ~~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~~~ 643 (832)
.++|++||++++... .++.+......++.||+.||++|+|+.....
T Consensus 82 ~~AN~iyeanwd~~r----------------------~~lP~~sd~ekrr~FIR~KYVeKRFa~~~s~ 127 (705)
T PLN03131 82 QRAREIYLKDWDQQR----------------------QRLPDNSKVDKIREFIKDIYVDKKYAGGKTH 127 (705)
T ss_pred HHHHHHHHhhccccc----------------------CCCCCCccHHHHHHHHHHHHhhhhhhcCCCC
Confidence 999999999887521 1222344556788999999999999987643
No 29
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.94 E-value=6e-26 Score=226.43 Aligned_cols=210 Identities=14% Similarity=0.164 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH-hhCCCCCCCccccCchHHHHHHHHHHHHHHHH
Q 003309 14 KQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALET-FGGGHNDPISVAFGGPVMTKFTIALREIGTYK 92 (832)
Q Consensus 14 a~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~-f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~ 92 (832)
|++++|..+|+.+|+||+++++.|++++.++...-.....|...+.. ... .+..++......+|.+|++++++++...
T Consensus 1 As~nhf~~Qi~~iE~Wl~~~~~~~~k~~~~~~~~e~~~nsfl~~~~p~~~~-s~~vidqdYT~~al~~f~~~l~e~~~~l 79 (214)
T cd07609 1 ASVNHFDDQVDAIEKWLDGYVSSTKKLYSSLDELERVINSFLSHLLPPLLV-SGGVIDQDYTPLALKRFGDGLKDFWGGV 79 (214)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-ccchhCchhHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999988644433334455544443 111 1112223334468999999999999766
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHH
Q 003309 93 EVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSL 172 (832)
Q Consensus 93 ~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~ 172 (832)
.....+.+..+++||++|+++||+++||.||+||+.|++||++++||++++|+|+|..++|++.+|+++|++|.++||||
T Consensus 80 l~~~~~~~~~~~~pL~~f~k~~i~~~Ke~rk~Fd~~q~kyD~~L~r~~~~sk~K~p~~l~Eda~qL~e~Rk~Y~~aSLDy 159 (214)
T cd07609 80 LSALKGNDSLILDPLRSFVKSDIRPYKELRKNFEYYQRKYDSMLARYVAQSKTKEPSSLREDAFQLFEARKAYLKASLDL 159 (214)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66666677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Q 003309 173 VTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH-QMEPYINQVLTYAQ 224 (832)
Q Consensus 173 ~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~-~l~~~~~~l~~~~~ 224 (832)
|.+|+.++...+.-+|+.+.+.+......+......+. .+..+++.++.|.+
T Consensus 160 v~qi~~lq~~lDkllv~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~ri~~W~~ 212 (214)
T cd07609 160 VIAIPQLRLTLDKLLVDIITDLWREKKRTHDDSGSKFDPKWGEEMERIRGWSE 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccccHHHHHHHHHHHHHHh
Confidence 99999999999988888777766555554443333333 66667777776654
No 30
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional
Probab=99.92 E-value=5.8e-25 Score=224.98 Aligned_cols=119 Identities=33% Similarity=0.508 Sum_probs=96.9
Q ss_pred cHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHHHH
Q 003309 501 KPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANS 580 (832)
Q Consensus 501 ~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~n~ 580 (832)
++++.|+..|+|+.|+|||+++|+|+|+|||||||++|+||||+||+|||+|||++|| .|++++|++|+.+||.++|.
T Consensus 11 ~vfrkL~~kPgNk~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD--~Ws~eqL~~Mk~GGN~rA~~ 88 (395)
T PLN03114 11 SVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLD--SWSSEQLKMMIYGGNNRAQV 88 (395)
T ss_pred HHHHHHHhCcCCCcCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCC--CCCHHHHHHHHHhcCHHHHH
Confidence 5688899999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCC
Q 003309 581 VWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKP 641 (832)
Q Consensus 581 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~ 641 (832)
+|+..--... . ..+-.=.+....+-+.+..+++.+.+....
T Consensus 89 fF~qhG~~~~------~--------------~~~~KY~S~aA~~Yre~L~keVa~~~a~~~ 129 (395)
T PLN03114 89 FFKQYGWSDG------G--------------KTEAKYTSRAADLYKQILAKEVAKSKAEEE 129 (395)
T ss_pred HHHHcCCCCC------C--------------CcccccCCHHHHHHHHHHHHHHHHhhhccc
Confidence 9985321100 0 011111233455556688888888887443
No 31
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.91 E-value=3.7e-25 Score=224.48 Aligned_cols=83 Identities=39% Similarity=0.791 Sum_probs=76.6
Q ss_pred ccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHHH
Q 003309 500 EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFAN 579 (832)
Q Consensus 500 ~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~n 579 (832)
.+.|..++...+|+.|+||++++|+|||++|||+||.+|||+||+||||||+||||||| .|.+.+|+.|++.||.+++
T Consensus 7 rr~L~~lkp~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD--~wkeiel~kMeaGGN~~~~ 84 (386)
T KOG0704|consen 7 RRVLLELKPQDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMD--KWKEIELKKMEAGGNERFR 84 (386)
T ss_pred HHHHHhcCccccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecc--cccHHHHHHHHhccchhHH
Confidence 34555555556999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHh
Q 003309 580 SVWEE 584 (832)
Q Consensus 580 ~~~e~ 584 (832)
.+++.
T Consensus 85 eFL~s 89 (386)
T KOG0704|consen 85 EFLSS 89 (386)
T ss_pred HHHhh
Confidence 99875
No 32
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.90 E-value=9.5e-25 Score=229.56 Aligned_cols=83 Identities=46% Similarity=0.807 Sum_probs=80.1
Q ss_pred ccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHHH
Q 003309 500 EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFAN 579 (832)
Q Consensus 500 ~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~n 579 (832)
..++..|+..+.|+.|+|||+++|+|+|+.|||||||+||++||+||||||+|||..|| .|+.++|+.|+..||..|+
T Consensus 11 ~~vfkkLRs~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLD--sWs~~qLR~M~~GGN~nA~ 88 (454)
T KOG0706|consen 11 QTVFKKLRSQSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLD--SWSWEQLRRMQVGGNANAR 88 (454)
T ss_pred HHHHHHHhcCCCCceecccCCCCCCceeecceEEEEEecchhhhccccceEEEeecccc--cCCHHHHhHhhhcCchhHH
Confidence 46789999999999999999999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHh
Q 003309 580 SVWEE 584 (832)
Q Consensus 580 ~~~e~ 584 (832)
.++..
T Consensus 89 ~FFkq 93 (454)
T KOG0706|consen 89 VFFKQ 93 (454)
T ss_pred HHHHH
Confidence 99875
No 33
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.4e-22 Score=188.36 Aligned_cols=158 Identities=21% Similarity=0.264 Sum_probs=137.2
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCC
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS 730 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~ 730 (832)
...||+|+..|..+.|.-||...++.+|-.|.. |.+|+|+++..++...+. .|+-..+
T Consensus 39 Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDda---------------------GWtPlhia~s~g~~evVk-~Ll~r~~ 96 (226)
T KOG4412|consen 39 RTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDA---------------------GWTPLHIAASNGNDEVVK-ELLNRSG 96 (226)
T ss_pred CceeeeeeecCchhHHHHHHhcCCCCCCCcccc---------------------CCchhhhhhhcCcHHHHH-HHhcCCC
Confidence 356899999999988877776667777765444 478888888877555443 3445559
Q ss_pred CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 003309 731 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL 810 (832)
Q Consensus 731 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL 810 (832)
+++|..+..|.||||||+-.|..+++++|+++|+.++.+|..|.||||.|+.-|..+++++|+..|+.+|..|..|+|||
T Consensus 97 advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL 176 (226)
T KOG4412|consen 97 ADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPL 176 (226)
T ss_pred CCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHhhCCC
Q 003309 811 ELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 811 ~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|.|..-|| .++..+|+.+|+
T Consensus 177 ~~al~e~~--~d~a~lLV~~gA 196 (226)
T KOG4412|consen 177 HHALAEGH--PDVAVLLVRAGA 196 (226)
T ss_pred HHHHhccC--chHHHHHHHhcc
Confidence 99988888 778888988775
No 34
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.4e-21 Score=179.21 Aligned_cols=127 Identities=26% Similarity=0.266 Sum_probs=117.7
Q ss_pred cCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHHHH
Q 003309 703 SLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPLHRCI 781 (832)
Q Consensus 703 ~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-gadvn~~d~~g~TpLh~A~ 781 (832)
.++.+|+|+++..++..++.. ||...+..+|.+|..||||||+||..|+.++|+-|+.+ |+|+|+.++.|.||||||+
T Consensus 36 qD~Rt~LHwa~S~g~~eiv~f-Llsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAa 114 (226)
T KOG4412|consen 36 QDGRTPLHWACSFGHVEIVYF-LLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAA 114 (226)
T ss_pred ccCCceeeeeeecCchhHHHH-HHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhh
Confidence 357899999998888777554 45588899999999999999999999999999999999 9999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 782 LRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 782 ~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
..|+.+|+.+|+++|+.++++|..|.||||-|+..|. .+++++|+..|+
T Consensus 115 gK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGk--lkvie~Li~~~a 163 (226)
T KOG4412|consen 115 GKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGK--LKVIEYLISQGA 163 (226)
T ss_pred cCChhhHHHHHHhcCCCCcccccccCchhHHHHhccc--hhhHHHHHhcCC
Confidence 9999999999999999999999999999999999999 999999998764
No 35
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.82 E-value=1.8e-18 Score=174.26 Aligned_cols=192 Identities=30% Similarity=0.436 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~ 102 (832)
++.+++++++|+|.++.+++...+.......|+.+|.+++......... .++.++.+|+.+++++..++..+..++...
T Consensus 2 ~~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 80 (194)
T cd07307 2 LDELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNT-DLGEALEKFGKIQKELEEFRDQLEQKLENK 80 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999998888888899999999998865443321 245789999999999999999999999999
Q ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCC-chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003309 103 LNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT-KTDVAAILEEELHSARSAFEQARFSLVTALSNVEA 181 (832)
Q Consensus 103 ~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k-~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~ 181 (832)
++.||..|++.+++.+++.+|+|++.+.+||++++|+.++++++ .+..+.+++.++..+|..|...+.+|+..|+.+..
T Consensus 81 v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~ 160 (194)
T cd07307 81 VIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEE 160 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998765 67778899999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003309 182 KKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPY 215 (832)
Q Consensus 182 ~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~ 215 (832)
.+..+++..|..|+.+|..||+++++.++++.|+
T Consensus 161 ~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~~~ 194 (194)
T cd07307 161 KRKELFLSLLLSFIEAQSEFFKEVLKILEQLLPY 194 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCC
Confidence 9998999999999999999999999998887653
No 36
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.80 E-value=6.3e-20 Score=202.02 Aligned_cols=155 Identities=26% Similarity=0.306 Sum_probs=131.9
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
..||+|+-++++. |.+.|+++|+|||+..+.. +.||+|.|+..++ ..++.+|+.+|+
T Consensus 80 tlLHWAAiNNrl~-v~r~li~~gadvn~~gG~l--------------------~stPLHWAar~G~--~~vv~lLlqhGA 136 (600)
T KOG0509|consen 80 TLLHWAAINNRLD-VARYLISHGADVNAIGGVL--------------------GSTPLHWAARNGH--ISVVDLLLQHGA 136 (600)
T ss_pred cceeHHHHcCcHH-HHHHHHHcCCCccccCCCC--------------------CCCcchHHHHcCc--HHHHHHHHHcCC
Confidence 4566666665555 5567778999999876643 3466666665554 445567889999
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHH
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN-REGKTSL 810 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~-~~g~TpL 810 (832)
+++..|..|.||||+||..|++.+|-+||.+|+|+|.+|.+|+||||+|+..|+...+..||+.|++++.+| ..|.|||
T Consensus 137 dpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpL 216 (600)
T KOG0509|consen 137 DPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPL 216 (600)
T ss_pred CCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchH
Confidence 999999999999999999999999999999999999999999999999999999988999999999999998 8999999
Q ss_pred HHHHHcCCCcHHHHHHHhhCC
Q 003309 811 ELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 811 ~~A~~~g~~d~~iv~lLl~~g 831 (832)
|+|+..|+ ..++.+|++.|
T Consensus 217 Hwa~~~gN--~~~v~Ll~~g~ 235 (600)
T KOG0509|consen 217 HWAVVGGN--LTAVKLLLEGG 235 (600)
T ss_pred HHHHhcCC--cceEehhhhcC
Confidence 99999999 88888666644
No 37
>PHA02791 ankyrin-like protein; Provisional
Probab=99.80 E-value=4.1e-19 Score=188.21 Aligned_cols=174 Identities=15% Similarity=0.110 Sum_probs=139.6
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-----hhhhhhHHHHHhhhhc-----cccCCCCcccccccccCcccc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-----SCISSLTLAKAMLLNE-----QTSLERSSSSLTGNSSDRSSS 721 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-----~~~~~l~~~~~ll~~~-----~~~~~~~~~~l~~~~~~~~~~ 721 (832)
..|+.|+..++...| ++|++.|+++|..++.. ...++..+++.|+..+ .+..|.||+++|+..++...
T Consensus 32 TpLh~Aa~~g~~eiv-~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~ei- 109 (284)
T PHA02791 32 SALYYAIADNNVRLV-CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQT- 109 (284)
T ss_pred cHHHHHHHcCCHHHH-HHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH-
Confidence 568888888877655 55668899998765432 3345567777776533 33456788888877766544
Q ss_pred ccccccCCCCCCCcCCCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 003309 722 GSLNLAGTSEGQTMDDLEGC-TLLHLACDSADIGMLELLLQYGANINATD-SRGLTPLHRCILRGKAMFAKLLLTRGADP 799 (832)
Q Consensus 722 ~~lll~~~~~~~~~~d~~g~-TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 799 (832)
..+|+..|++++..+..|+ ||||+|+..|+.+++++|+.+|++. .| ..|.||||+|+..|+.+++++||++|+++
T Consensus 110 -vk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~ 186 (284)
T PHA02791 110 -VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTST 186 (284)
T ss_pred -HHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 4456677889998888885 8999999999999999999987654 23 25899999999999999999999999999
Q ss_pred CCCCCCCCcH-HHHHHHcCCCcHHHHHHHhhCCC
Q 003309 800 RAVNREGKTS-LELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 800 ~~~~~~g~Tp-L~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+.+|..|.|| ||+|+..|+ .++|++|+++|+
T Consensus 187 n~~d~~g~t~~L~~Aa~~~~--~e~v~lLl~~Ga 218 (284)
T PHA02791 187 NTNNSLLFIPDIKLAIDNKD--LEMLQALFKYDI 218 (284)
T ss_pred CcccCCCCChHHHHHHHcCC--HHHHHHHHHCCC
Confidence 9999999987 999999999 999999999885
No 38
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.79 E-value=6.5e-19 Score=199.87 Aligned_cols=177 Identities=18% Similarity=0.211 Sum_probs=141.0
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhcc------ccCCCCcccccccccC
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQ------TSLERSSSSLTGNSSD 717 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~------~~~~~~~~~l~~~~~~ 717 (832)
...|+.|+..++.+ ++++|++.|+++|..+..+ ...++...++.++.... ...+.||+++|+..+.
T Consensus 36 ~tpL~~A~~~~~~~-~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~ 114 (413)
T PHA02875 36 ISPIKLAMKFRDSE-AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKK 114 (413)
T ss_pred CCHHHHHHHcCCHH-HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCC
Confidence 35677788877776 4466668899888764433 33455666777665332 2346677777776554
Q ss_pred ccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 003309 718 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA 797 (832)
Q Consensus 718 ~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 797 (832)
. ....+|+..|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 115 ~--~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga 192 (413)
T PHA02875 115 L--DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA 192 (413)
T ss_pred H--HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 4 44555677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC-cHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 798 DPRAVNREGK-TSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 798 d~~~~~~~g~-TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+++..+..|. ||+|+|+..|+ .+++++|+++|+
T Consensus 193 ~~n~~~~~~~~t~l~~A~~~~~--~~iv~~Ll~~ga 226 (413)
T PHA02875 193 NIDYFGKNGCVAALCYAIENNK--IDIVRLFIKRGA 226 (413)
T ss_pred CCCcCCCCCCchHHHHHHHcCC--HHHHHHHHHCCc
Confidence 9999888774 78999999988 899999999875
No 39
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.78 E-value=4.2e-19 Score=195.55 Aligned_cols=159 Identities=24% Similarity=0.260 Sum_probs=138.9
Q ss_pred ccccceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCcccccccccc
Q 003309 648 HSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLA 727 (832)
Q Consensus 648 ~~~~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~ 727 (832)
+.....++.|++.|+++.|..++-..|.+||..|.++ ...++.++.+....+...|+
T Consensus 42 d~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g-----------------------~tlLHWAAiNNrl~v~r~li 98 (600)
T KOG0509|consen 42 DSSLDDIVKATQYGELETVKELVESEGESVNNPDREG-----------------------VTLLHWAAINNRLDVARYLI 98 (600)
T ss_pred chhhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCC-----------------------ccceeHHHHcCcHHHHHHHH
Confidence 3445678899999999999988854499999877765 34455566677777788899
Q ss_pred CCCCCCCcCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 003309 728 GTSEGQTMDD-LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREG 806 (832)
Q Consensus 728 ~~~~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g 806 (832)
+.|+++|..+ .-|.||||+||++|++.+|.+|+++|||++.+|..|.||||.|+..|+.-+|-+||..|+|++.+|.+|
T Consensus 99 ~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~g 178 (600)
T KOG0509|consen 99 SHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNG 178 (600)
T ss_pred HcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCC
Confidence 9999999987 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 807 KTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 807 ~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
+||||+|+..|+ ...+..||.-|
T Consensus 179 rTpLmwAaykg~--~~~v~~LL~f~ 201 (600)
T KOG0509|consen 179 RTPLMWAAYKGF--ALFVRRLLKFG 201 (600)
T ss_pred CCHHHHHHHhcc--cHHHHHHHHhc
Confidence 999999999998 44477777644
No 40
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.78 E-value=8.8e-19 Score=156.68 Aligned_cols=93 Identities=20% Similarity=0.524 Sum_probs=67.9
Q ss_pred EEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCC-CCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccc
Q 003309 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (832)
Q Consensus 295 k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (832)
|+|||.|+++...++||||||+|+ ++.|+||+++.+ .|.|
T Consensus 1 KeG~L~K~g~~~~k~wkkRwFvL~-~~~L~Yyk~~~d~~~~G-------------------------------------- 41 (103)
T cd01251 1 KEGFMEKTGPKHTEGFKKRWFTLD-DRRLMYFKDPLDAFAKG-------------------------------------- 41 (103)
T ss_pred CceeEEecCCCCCCCceeEEEEEe-CCEEEEECCCCCcCcCc--------------------------------------
Confidence 589999997765678999999999 677888877543 2222
Q ss_pred ccccccccc----cccc--CCc-ccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 374 RHTVNLLTS----TIKV--DAD-QSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 374 ~~~i~l~~~----~v~~--~~~-~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.|.|..+ +|.. ++. ..+..+||+|+||+|+|+|+|+|++||++||+||+.++.
T Consensus 42 --~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 42 --EVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred --EEEeeccccceeEeccCCccccccccceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 2333221 1211 111 223346999999999999999999999999999999874
No 41
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.77 E-value=9.8e-19 Score=155.83 Aligned_cols=95 Identities=27% Similarity=0.488 Sum_probs=72.9
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccc
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (832)
++|+|||.|+++. .++|+||||+|+ ++.|+||+++.+. .
T Consensus 2 v~k~G~L~Kkg~~-~k~WkkRwfvL~-~~~L~yyk~~~~~---------------------------------------~ 40 (100)
T cd01233 2 VSKKGYLNFPEET-NSGWTRRFVVVR-RPYLHIYRSDKDP---------------------------------------V 40 (100)
T ss_pred cceeEEEEeeCCC-CCCcEEEEEEEE-CCEEEEEccCCCc---------------------------------------c
Confidence 4689999999765 478999999999 6777777775431 1
Q ss_pred ccccccccccccccCCccc---CCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 373 ARHTVNLLTSTIKVDADQS---DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 373 ~~~~i~l~~~~v~~~~~~~---~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
+.+.|+|..+.+....+.. .+++||+|++++|+|+|+|+|++|+++||.+|+.+++
T Consensus 41 ~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 41 ERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred EeeEEEecccEEEEccchhhhcCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 2244666666665432221 2579999999999999999999999999999987653
No 42
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.77 E-value=9.2e-19 Score=202.15 Aligned_cols=178 Identities=22% Similarity=0.249 Sum_probs=131.6
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhh-------HHHHHhhhhccc---cCCCCcccccccccC----
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL-------TLAKAMLLNEQT---SLERSSSSLTGNSSD---- 717 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l-------~~~~~ll~~~~~---~~~~~~~~l~~~~~~---- 717 (832)
..||.|+..|+.+.|.. |++.|+|||..+..+....++ ..++.++..... ..+.++++.++..++
T Consensus 39 tPLh~A~~~g~~e~vk~-Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~ 117 (477)
T PHA02878 39 IPLHQAVEARNLDVVKS-LLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIF 117 (477)
T ss_pred chHHHHHHcCCHHHHHH-HHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHH
Confidence 45899999998887654 558999999987765333222 233333321111 111222222211111
Q ss_pred ---------------------------ccccccccccCCCCCCCcCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 003309 718 ---------------------------RSSSGSLNLAGTSEGQTMDDLE-GCTLLHLACDSADIGMLELLLQYGANINAT 769 (832)
Q Consensus 718 ---------------------------~~~~~~lll~~~~~~~~~~d~~-g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~ 769 (832)
.......+|+..|++++..+.. |.||||+|+..|+.+++++|+++|+++|..
T Consensus 118 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~ 197 (477)
T PHA02878 118 KIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP 197 (477)
T ss_pred HHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCc
Confidence 0112445677788999999888 999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc-CCCcHHHHHHHhhCCC
Q 003309 770 DSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES-NFADSEVLAILSDSHG 832 (832)
Q Consensus 770 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~-g~~d~~iv~lLl~~gg 832 (832)
|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++ .+++++|+++|+
T Consensus 198 d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~--~~iv~~Ll~~ga 259 (477)
T PHA02878 198 DKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKD--YDILKLLLEHGV 259 (477)
T ss_pred CCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCC--HHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999875 45 889999998774
No 43
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.77 E-value=1.2e-18 Score=152.38 Aligned_cols=92 Identities=18% Similarity=0.408 Sum_probs=69.2
Q ss_pred EEEEEEecCCC--CCCCCceeEEEEeCCceEEEEecCCC-CCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 295 RQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 295 k~G~L~K~~~~--~~~~WkrRwfvL~~~~~l~yy~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
.+|||.|+++. ..|+|+||||+|+ ++.|+||+.... .|.
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~-~~~L~y~K~~~~~~~~------------------------------------- 43 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLS-GAQLLFQKGKSKDDPD------------------------------------- 43 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEe-CCEEEEEeccCccCCC-------------------------------------
Confidence 48999999775 6789999999999 555677766432 111
Q ss_pred cccccccccccccccCCccc----CCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIKVDADQS----DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~~~----~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
.+.|+|..|......++. +++|||+|+||+|||+|+|+|++|+++||++|+.|
T Consensus 44 --~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 44 --DCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred --CceEEcccceEEeeccccccccccCcEEEEEcCCceEEEEeCCHHHHHHHHHHHHhh
Confidence 134667666543333321 34699999999999999999999999999999876
No 44
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.77 E-value=1.4e-18 Score=177.40 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=93.0
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCC
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS 730 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~ 730 (832)
...|+.|+..++...|..++ .. +|..+. .+.||+++++....+......+|+..|
T Consensus 22 ~~pL~~A~~~~~~~~vk~Li-~~---~n~~~~---------------------~g~TpLh~a~~~~~~~~eiv~~Ll~~g 76 (209)
T PHA02859 22 CNPLFYYVEKDDIEGVKKWI-KF---VNDCND---------------------LYETPIFSCLEKDKVNVEILKFLIENG 76 (209)
T ss_pred CcHHHHHHHhCcHHHHHHHH-Hh---hhccCc---------------------cCCCHHHHHHHcCCCCHHHHHHHHHCC
Confidence 34577777777777776655 22 232222 234555555444434444555566666
Q ss_pred CCCCcCC-CCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCCCCC
Q 003309 731 EGQTMDD-LEGCTLLHLACDS---ADIGMLELLLQYGANINATDSRGLTPLHRCIL--RGKAMFAKLLLTRGADPRAVNR 804 (832)
Q Consensus 731 ~~~~~~d-~~g~TpLh~Aa~~---g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~--~g~~~~v~~Ll~~gad~~~~~~ 804 (832)
++++..+ ..|.||||+|+.. ++.+++++|+++|+++|.+|..|.||||+|+. .++.+++++|+++|++++.+|.
T Consensus 77 advn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~ 156 (209)
T PHA02859 77 ADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF 156 (209)
T ss_pred CCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC
Confidence 6666665 3566777766542 35666666666677776666667777766654 3466677777766777666666
Q ss_pred CCCcHHHHH-HHcCCCcHHHHHHHhhCC
Q 003309 805 EGKTSLELA-VESNFADSEVLAILSDSH 831 (832)
Q Consensus 805 ~g~TpL~~A-~~~g~~d~~iv~lLl~~g 831 (832)
+|.||||.+ +..++ .+++++|+++|
T Consensus 157 ~g~t~Lh~~a~~~~~--~~iv~~Ll~~G 182 (209)
T PHA02859 157 DNNNILYSYILFHSD--KKIFDFLTSLG 182 (209)
T ss_pred CCCcHHHHHHHhcCC--HHHHHHHHHcC
Confidence 667777643 34444 66666666655
No 45
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.77 E-value=3.5e-19 Score=187.66 Aligned_cols=150 Identities=24% Similarity=0.366 Sum_probs=128.3
Q ss_pred eeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCCC
Q 003309 653 QIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEG 732 (832)
Q Consensus 653 ~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~ 732 (832)
.||.|...|+++ |+++|+.+|++||...... .+++.+++..+...+...|.+.|+|
T Consensus 87 pLWaAsaAGHl~-vVk~L~~~ga~VN~tT~TN-----------------------StPLraACfDG~leivKyLvE~gad 142 (615)
T KOG0508|consen 87 PLWAASAAGHLE-VVKLLLRRGASVNDTTRTN-----------------------STPLRAACFDGHLEIVKYLVEHGAD 142 (615)
T ss_pred hhhHHhccCcHH-HHHHHHHhcCccccccccC-----------------------CccHHHHHhcchhHHHHHHHHcCCC
Confidence 377777777766 5567779999999743322 3444555556666666667799999
Q ss_pred CCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 003309 733 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLEL 812 (832)
Q Consensus 733 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~ 812 (832)
+++.|..|.|.||+||+.|+.+++++|++.|||+|.++..|+|+||.++..|+.+++++|+.+|+-++. |..|.|||..
T Consensus 143 ~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~ 221 (615)
T KOG0508|consen 143 PEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLL 221 (615)
T ss_pred CcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998864 6669999999
Q ss_pred HHHcCCCcHHHHHHHhh
Q 003309 813 AVESNFADSEVLAILSD 829 (832)
Q Consensus 813 A~~~g~~d~~iv~lLl~ 829 (832)
|+..|+ .++|.+|++
T Consensus 222 Aa~tG~--~~iVe~L~~ 236 (615)
T KOG0508|consen 222 AAVTGH--TDIVERLLQ 236 (615)
T ss_pred Hhhhcc--hHHHHHHhc
Confidence 999999 889999984
No 46
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.77 E-value=3.1e-18 Score=198.45 Aligned_cols=178 Identities=17% Similarity=0.181 Sum_probs=140.4
Q ss_pred ceeehhhhcCc-----hhhhHhhhhccccccccccchhhhh----------hhhHHHHHhhhhccc------cCCCCccc
Q 003309 652 HQIWEGVRTND-----KKAVYRHIVNFEVDVNAVYEQVSCI----------SSLTLAKAMLLNEQT------SLERSSSS 710 (832)
Q Consensus 652 ~~L~~Av~~~d-----~~~v~~lL~~~gadvN~~~~~~~~~----------~~l~~~~~ll~~~~~------~~~~~~~~ 710 (832)
..|+.|+..+. ...++++|+++|+|+|..+..+... +++.+++.|+..+.+ ..|.||++
T Consensus 71 tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh 150 (494)
T PHA02989 71 TPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLH 150 (494)
T ss_pred CcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHH
Confidence 44565655443 3567888889999999887665322 345677777765443 34678888
Q ss_pred ccccccCccccccccccCCCCCCCc-CCCCCCcHHHHHHHcC----CHHHHHHHHHcCCCCCc-----------------
Q 003309 711 LTGNSSDRSSSGSLNLAGTSEGQTM-DDLEGCTLLHLACDSA----DIGMLELLLQYGANINA----------------- 768 (832)
Q Consensus 711 l~~~~~~~~~~~~lll~~~~~~~~~-~d~~g~TpLh~Aa~~g----~~~~v~~Ll~~gadvn~----------------- 768 (832)
+++...........+|+..|++++. .+..|.||||+|+..+ +.+++++|+++|+++|.
T Consensus 151 ~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~ 230 (494)
T PHA02989 151 MYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNK 230 (494)
T ss_pred HHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhch
Confidence 8776665556666777788888888 6788999999887654 78999999888887654
Q ss_pred ---------------------cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHH
Q 003309 769 ---------------------TDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAIL 827 (832)
Q Consensus 769 ---------------------~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lL 827 (832)
+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..|+ .++|++|
T Consensus 231 ~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~--~~iv~~L 308 (494)
T PHA02989 231 ILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGN--IDMLNRI 308 (494)
T ss_pred hhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC--HHHHHHH
Confidence 45569999999999999999999999999999999999999999999998 9999999
Q ss_pred hhCC
Q 003309 828 SDSH 831 (832)
Q Consensus 828 l~~g 831 (832)
++.+
T Consensus 309 L~~~ 312 (494)
T PHA02989 309 LQLK 312 (494)
T ss_pred HhcC
Confidence 9864
No 47
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.76 E-value=3.5e-18 Score=194.97 Aligned_cols=172 Identities=23% Similarity=0.323 Sum_probs=117.9
Q ss_pred ccceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhccccCCCCcccccccccCccccc
Q 003309 650 VAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSG 722 (832)
Q Consensus 650 ~~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~ 722 (832)
....|+.|+..|+.+.|. +|++.|+|+|..+..+ ...++..++++|+..+.+. ..++.... ....
T Consensus 35 ~~tpL~~A~~~g~~~iv~-~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~-----~~~~~~~~--~~~~ 106 (434)
T PHA02874 35 TTTPLIDAIRSGDAKIVE-LFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDT-----SILPIPCI--EKDM 106 (434)
T ss_pred CCCHHHHHHHcCCHHHHH-HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-----CcchhccC--CHHH
Confidence 346788899998888664 5569999999876554 2345556677776543221 11111111 1223
Q ss_pred cccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 003309 723 SLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV 802 (832)
Q Consensus 723 ~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~ 802 (832)
...++..|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 107 i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~ 186 (434)
T PHA02874 107 IKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK 186 (434)
T ss_pred HHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC
Confidence 33455667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 803 NREGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 803 ~~~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
+..|.||||+|+..|+ .+++++|++.|
T Consensus 187 ~~~g~tpL~~A~~~g~--~~iv~~Ll~~g 213 (434)
T PHA02874 187 DNNGESPLHNAAEYGD--YACIKLLIDHG 213 (434)
T ss_pred CCCCCCHHHHHHHcCC--HHHHHHHHhCC
Confidence 7777777777777777 77777777765
No 48
>PHA03095 ankyrin-like protein; Provisional
Probab=99.76 E-value=5.3e-18 Score=195.89 Aligned_cols=178 Identities=22% Similarity=0.173 Sum_probs=148.3
Q ss_pred ceeehhhhcC-chhhhHhhhhccccccccccchhhhhh---------hhHHHHHhhhhc-----cccCCCCccccccccc
Q 003309 652 HQIWEGVRTN-DKKAVYRHIVNFEVDVNAVYEQVSCIS---------SLTLAKAMLLNE-----QTSLERSSSSLTGNSS 716 (832)
Q Consensus 652 ~~L~~Av~~~-d~~~v~~lL~~~gadvN~~~~~~~~~~---------~l~~~~~ll~~~-----~~~~~~~~~~l~~~~~ 716 (832)
..|+.|+... ....++++|++.|+|+|..+..+.... ...+++.++..+ .+..+.++++.++...
T Consensus 119 tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~ 198 (471)
T PHA03095 119 TPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSF 198 (471)
T ss_pred CHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHC
Confidence 4567777433 245677888899999999777653322 334555555532 2345778888888776
Q ss_pred CccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 003309 717 DRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADI--GMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 794 (832)
Q Consensus 717 ~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~--~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~ 794 (832)
.........|+..|++++.+|..|.||||+||..|+. .+++.|+..|+++|.+|..|+||||+|+..|+.+++++||+
T Consensus 199 ~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~ 278 (471)
T PHA03095 199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIA 278 (471)
T ss_pred CCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 6666777778899999999999999999999999975 68899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 795 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 795 ~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
+|++++.+|.+|.||||+|+..|+ .+++++|++++
T Consensus 279 ~gad~n~~~~~g~tpl~~A~~~~~--~~~v~~LL~~~ 313 (471)
T PHA03095 279 LGADINAVSSDGNTPLSLMVRNNN--GRAVRAALAKN 313 (471)
T ss_pred cCCCCcccCCCCCCHHHHHHHhCC--HHHHHHHHHhC
Confidence 999999999999999999999999 99999999865
No 49
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.75 E-value=3.2e-18 Score=151.29 Aligned_cols=92 Identities=24% Similarity=0.456 Sum_probs=70.3
Q ss_pred EEEEEEecCCC--------CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCC
Q 003309 295 RQGYLSKRSSN--------LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV 366 (832)
Q Consensus 295 k~G~L~K~~~~--------~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (832)
++|||+|...+ ..|+||||||||+++++|+||+....
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~----------------------------------- 45 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMP----------------------------------- 45 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCC-----------------------------------
Confidence 47999999854 25799999999998899999865421
Q ss_pred CCccccccccccccccccccCCcc-cCCcceEEEecCCceEEEEeCCHHHHHHHHHHHH
Q 003309 367 HDEKSAARHTVNLLTSTIKVDADQ-SDLRFCFRIISPTKNYTLQAESALDQMDWIEKIT 424 (832)
Q Consensus 367 ~~~~~~~~~~i~l~~~~v~~~~~~-~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~ 424 (832)
.+.+.+.|+|..|......++ ..+.|||+|+||+|+|+|.|+|++|+++||++|.
T Consensus 46 ---~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 46 ---TTLPQGTIDMNQCTDVVDAEARTGQKFSICILTPDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred ---CcccceEEEccceEEEeecccccCCccEEEEECCCceEEEEeCCHHHHHHHHHHHH
Confidence 012235577776665443332 3456999999999999999999999999999986
No 50
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.75 E-value=9.5e-18 Score=190.32 Aligned_cols=176 Identities=16% Similarity=0.150 Sum_probs=144.5
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhccc-----cCCCCcccccccccCcc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQT-----SLERSSSSLTGNSSDRS 719 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~-----~~~~~~~~l~~~~~~~~ 719 (832)
..|+.|+..|+.+.+. .|++.|+|+|..+..+ ...++..+++.|+..+.. ..+.++++.++..++..
T Consensus 4 ~~L~~A~~~g~~~iv~-~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 4 VALCDAILFGELDIAR-RLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred hHHHHHHHhCCHHHHH-HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 4689999999887665 5558999999876544 234566777777765443 34567777777666555
Q ss_pred ccccccccCCCCCC-CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 003309 720 SSGSLNLAGTSEGQ-TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 798 (832)
Q Consensus 720 ~~~~lll~~~~~~~-~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 798 (832)
.+ ..|+..|+.. +..+.+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 83 ~v--~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~ 160 (413)
T PHA02875 83 AV--EELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC 160 (413)
T ss_pred HH--HHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence 43 3344455444 45567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 799 PRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 799 ~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 161 ~~~~d~~g~TpL~~A~~~g~--~eiv~~Ll~~ga 192 (413)
T PHA02875 161 LDIEDCCGCTPLIIAMAKGD--IAICKMLLDSGA 192 (413)
T ss_pred CCCCCCCCCCHHHHHHHcCC--HHHHHHHHhCCC
Confidence 99999999999999999998 999999999875
No 51
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.75 E-value=8.3e-18 Score=194.75 Aligned_cols=176 Identities=23% Similarity=0.325 Sum_probs=112.0
Q ss_pred ceeehhh--hcCchhhhHhhhhccccccccccchh-------hhhh--hhHHHHHhhhhccc-----cCCCCcccccccc
Q 003309 652 HQIWEGV--RTNDKKAVYRHIVNFEVDVNAVYEQV-------SCIS--SLTLAKAMLLNEQT-----SLERSSSSLTGNS 715 (832)
Q Consensus 652 ~~L~~Av--~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~--~l~~~~~ll~~~~~-----~~~~~~~~l~~~~ 715 (832)
..|+.|+ ..++.+ ++++|++.|+|+|..+..+ ...+ +..+++.++..+.+ ..+.||+++|+..
T Consensus 108 tpL~~A~~~~~~~~~-iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~ 186 (480)
T PHA03100 108 TPLLYAISKKSNSYS-IVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEK 186 (480)
T ss_pred chhhHHHhcccChHH-HHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHh
Confidence 4455566 444444 3344446677766655443 1123 44555555543322 2445555555554
Q ss_pred cCccccccccccCCCCCCCcCCCCC------CcHHHHHHHcCC--HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHH
Q 003309 716 SDRSSSGSLNLAGTSEGQTMDDLEG------CTLLHLACDSAD--IGMLELLLQYGANINATDSRGLTPLHRCILRGKAM 787 (832)
Q Consensus 716 ~~~~~~~~lll~~~~~~~~~~d~~g------~TpLh~Aa~~g~--~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~ 787 (832)
+ ......+|+..|++++..+..| .||||.|+..|+ .+++++|+++|+++|.+|..|.||||+|+..|+.+
T Consensus 187 ~--~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~ 264 (480)
T PHA03100 187 G--NIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPE 264 (480)
T ss_pred C--CHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 4 3333444555666666666666 677777777777 77777777777777777777777777777777777
Q ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 788 FAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 788 ~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
++++|+++|++++.+|..|.|||++|+..++ .+++++|+++|+
T Consensus 265 iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~--~~iv~~Ll~~g~ 307 (480)
T PHA03100 265 FVKYLLDLGANPNLVNKYGDTPLHIAILNNN--KEIFKLLLNNGP 307 (480)
T ss_pred HHHHHHHcCCCCCccCCCCCcHHHHHHHhCC--HHHHHHHHhcCC
Confidence 7777777777777777777777777777776 777777777664
No 52
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.74 E-value=6.3e-18 Score=148.90 Aligned_cols=91 Identities=25% Similarity=0.380 Sum_probs=71.4
Q ss_pred EEEEEecCCC-CCCCCceeEEEEeCC-ceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccc
Q 003309 296 QGYLSKRSSN-LRGDWKRRFFVLDSR-GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (832)
Q Consensus 296 ~G~L~K~~~~-~~~~WkrRwfvL~~~-~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (832)
+|||.|+++. ..++|+||||||+++ +.||||+++.+. .+
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~---------------------------------------~p 42 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDA---------------------------------------KP 42 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcc---------------------------------------cc
Confidence 6999999764 478999999999854 589999876431 23
Q ss_pred cccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 374 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 374 ~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
.+.|+|..+++...++ +++++|+|+|++|+|+|+|+|++||++||+||+.+.
T Consensus 43 ~G~I~L~~~~~~~~~~--~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~~ 94 (95)
T cd01265 43 LGRVDLSGAAFTYDPR--EEKGRFEIHSNNEVIALKASSDKQMNYWLQALQSKR 94 (95)
T ss_pred cceEECCccEEEcCCC--CCCCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhhc
Confidence 3557777666543322 347899999999999999999999999999998763
No 53
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.74 E-value=9e-18 Score=196.62 Aligned_cols=128 Identities=20% Similarity=0.152 Sum_probs=110.4
Q ss_pred cCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHH-----------------------------------
Q 003309 703 SLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLA----------------------------------- 747 (832)
Q Consensus 703 ~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~A----------------------------------- 747 (832)
..+.||+++|+..++....+..+|+..|++++.+|..|+||||+|
T Consensus 210 ~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i 289 (764)
T PHA02716 210 NHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYI 289 (764)
T ss_pred CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHH
Confidence 345788988887776555566677889999999999999999975
Q ss_pred --HHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc-------
Q 003309 748 --CDSADIGMLELLLQYGANINATDSRGLTPLHRCIL--RGKAMFAKLLLTRGADPRAVNREGKTSLELAVES------- 816 (832)
Q Consensus 748 --a~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~--~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~------- 816 (832)
+..|+.+++++|+++|+++|.+|..|+||||+|+. .++.+++++|+++|++++.+|..|.||||+|+..
T Consensus 290 ~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~l 369 (764)
T PHA02716 290 TLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNIL 369 (764)
T ss_pred HHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccc
Confidence 44578899999999999999999999999999864 4689999999999999999999999999998752
Q ss_pred -------CCCcHHHHHHHhhCCC
Q 003309 817 -------NFADSEVLAILSDSHG 832 (832)
Q Consensus 817 -------g~~d~~iv~lLl~~gg 832 (832)
++ .+++++|+++|+
T Consensus 370 d~~~~~~~~--~eVVklLL~~GA 390 (764)
T PHA02716 370 DPETDNDIR--LDVIQCLISLGA 390 (764)
T ss_pred cccccccCh--HHHHHHHHHCCC
Confidence 44 899999999875
No 54
>PHA03095 ankyrin-like protein; Provisional
Probab=99.74 E-value=1.2e-17 Score=193.07 Aligned_cols=179 Identities=20% Similarity=0.109 Sum_probs=152.6
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhh---------hhhHHHHHhhhhc-----cccCCCCcccccccccC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI---------SSLTLAKAMLLNE-----QTSLERSSSSLTGNSSD 717 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~---------~~l~~~~~ll~~~-----~~~~~~~~~~l~~~~~~ 717 (832)
..|+.|+..++...++++|++.|+|+|..+..+... .+..+++.|+..+ .+..+.+|+++++....
T Consensus 85 TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~ 164 (471)
T PHA03095 85 TPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRN 164 (471)
T ss_pred CHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 568889999987788899999999999988765322 2345566666533 33467888888887776
Q ss_pred ccccccccccCCCCCCCcCCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCH--HHHHHHH
Q 003309 718 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDS--ADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA--MFAKLLL 793 (832)
Q Consensus 718 ~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~--g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~--~~v~~Ll 793 (832)
.......+|+..|++++..|..|.||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+. .++..|+
T Consensus 165 ~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll 244 (471)
T PHA03095 165 ANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLL 244 (471)
T ss_pred CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHH
Confidence 666777788899999999999999999999875 778999999999999999999999999999999975 6889999
Q ss_pred hCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 794 TRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 794 ~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
..|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 245 ~~g~din~~d~~g~TpLh~A~~~~~--~~~v~~LL~~ga 281 (471)
T PHA03095 245 IAGISINARNRYGQTPLHYAAVFNN--PRACRRLIALGA 281 (471)
T ss_pred HcCCCCCCcCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 9999999999999999999999998 999999999875
No 55
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.74 E-value=1.8e-17 Score=191.97 Aligned_cols=173 Identities=24% Similarity=0.214 Sum_probs=147.4
Q ss_pred hhhcCchhhhHhhhhccccccccccchh-------h--hhhhhHHHHHhhhhccc-----cCCCCcccccccccCccccc
Q 003309 657 GVRTNDKKAVYRHIVNFEVDVNAVYEQV-------S--CISSLTLAKAMLLNEQT-----SLERSSSSLTGNSSDRSSSG 722 (832)
Q Consensus 657 Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~--~~~~l~~~~~ll~~~~~-----~~~~~~~~l~~~~~~~~~~~ 722 (832)
|+..++.+ ++++|++.|+++|..+..+ . ..++..+++.++..+.+ ..|.+++++++..+......
T Consensus 80 a~~~~~~~-iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~i 158 (480)
T PHA03100 80 YNLTDVKE-IVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKI 158 (480)
T ss_pred HHhhchHH-HHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHH
Confidence 77766665 5567779999999877654 2 44566677777764433 45677888777766435556
Q ss_pred cccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC------CcHHHHHHHcCC--HHHHHHHHh
Q 003309 723 SLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRG------LTPLHRCILRGK--AMFAKLLLT 794 (832)
Q Consensus 723 ~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g------~TpLh~A~~~g~--~~~v~~Ll~ 794 (832)
..+|+..|++++..|..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+ .+++++|++
T Consensus 159 v~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~ 238 (480)
T PHA03100 159 LKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS 238 (480)
T ss_pred HHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH
Confidence 667888899999999999999999999999999999999999999999988 899999999999 999999999
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 795 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 795 ~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 239 ~g~din~~d~~g~TpL~~A~~~~~--~~iv~~Ll~~ga 274 (480)
T PHA03100 239 YGVPINIKDVYGFTPLHYAVYNNN--PEFVKYLLDLGA 274 (480)
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 999999999999999999999998 999999999885
No 56
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.73 E-value=3.8e-18 Score=179.96 Aligned_cols=164 Identities=18% Similarity=0.182 Sum_probs=134.8
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
..|..|+++|+...|..+|..-++++.....-. .++.+..| .+.+.+++..++..++.+|+..|+
T Consensus 44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~-------------FDge~Ieg--appLWaAsaAGHl~vVk~L~~~ga 108 (615)
T KOG0508|consen 44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVR-------------FDGETIEG--APPLWAASAAGHLEVVKLLLRRGA 108 (615)
T ss_pred CceeeehhcCcHHHHHHHHHHhcCCccCCceEE-------------eCCcccCC--CchhhHHhccCcHHHHHHHHHhcC
Confidence 457889999998877767655788875421110 01122222 333445555555666667777889
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE 811 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~ 811 (832)
++|....-..|||-.||.-|+.++|++|+++|+|++..|..|.|.||+||..||.+|+++|++.|||+|.++..|.|+||
T Consensus 109 ~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH 188 (615)
T KOG0508|consen 109 SVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALH 188 (615)
T ss_pred ccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHH
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHhhCCC
Q 003309 812 LAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 812 ~A~~~g~~d~~iv~lLl~~gg 832 (832)
.+++.|+ .+|+++|+.+|+
T Consensus 189 ~caEsG~--vdivq~Ll~~ga 207 (615)
T KOG0508|consen 189 DCAESGS--VDIVQLLLKHGA 207 (615)
T ss_pred hhhhccc--HHHHHHHHhCCc
Confidence 9999999 999999999774
No 57
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.73 E-value=8.4e-18 Score=151.22 Aligned_cols=95 Identities=21% Similarity=0.373 Sum_probs=67.9
Q ss_pred eEEEEEEecCCCC----CCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 294 IRQGYLSKRSSNL----RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 294 ~k~G~L~K~~~~~----~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
+|+|||+||+.+. +++||+|||||+ ++.|+||+++.+.
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~-~~~L~Yyk~~~~~------------------------------------- 42 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLT-KSKLSYYEGDFEK------------------------------------- 42 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEc-CCEEEEECCCccc-------------------------------------
Confidence 4799999997442 359999999998 7788888775431
Q ss_pred ccccccccccccccccc-CCcc------cCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTSTIKV-DADQ------SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v~~-~~~~------~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
...+.+.|+|..+.... ..+. ..+.|||+|++++|+|+|+|+|++|+++||.||+.+
T Consensus 43 ~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 43 RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred ccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHhC
Confidence 01122445554443221 1111 135799999999999999999999999999999863
No 58
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.73 E-value=1.2e-17 Score=170.59 Aligned_cols=146 Identities=17% Similarity=0.185 Sum_probs=120.0
Q ss_pred ceeehhhhcC-chhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCccccccccc-CccccccccccCC
Q 003309 652 HQIWEGVRTN-DKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSS-DRSSSGSLNLAGT 729 (832)
Q Consensus 652 ~~L~~Av~~~-d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~-~~~~~~~lll~~~ 729 (832)
..|+.|+..+ ...+++++|++.|+|||..+.. .+.||+++++... .....+..+|+..
T Consensus 53 TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~--------------------~g~TpLh~a~~~~~~~~~eiv~~Ll~~ 112 (209)
T PHA02859 53 TPIFSCLEKDKVNVEILKFLIENGADVNFKTRD--------------------NNLSALHHYLSFNKNVEPEILKILIDS 112 (209)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCC--------------------CCCCHHHHHHHhCccccHHHHHHHHHC
Confidence 4577787654 3456778888999999986531 2356777665432 2344556667789
Q ss_pred CCCCCcCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCCcHHHH-HHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 003309 730 SEGQTMDDLEGCTLLHLACD--SADIGMLELLLQYGANINATDSRGLTPLHR-CILRGKAMFAKLLLTRGADPRAVNREG 806 (832)
Q Consensus 730 ~~~~~~~d~~g~TpLh~Aa~--~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~-A~~~g~~~~v~~Ll~~gad~~~~~~~g 806 (832)
|++++..|.+|.||||+|+. .++.+++++|+++|++++.+|..|.||||. |+..++.+++++|+++|++++.+|..|
T Consensus 113 gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g 192 (209)
T PHA02859 113 GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSG 192 (209)
T ss_pred CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Confidence 99999999999999999876 468999999999999999999999999995 567889999999999999999999999
Q ss_pred CcHHHHHHHcC
Q 003309 807 KTSLELAVESN 817 (832)
Q Consensus 807 ~TpL~~A~~~g 817 (832)
.|||++|+..+
T Consensus 193 ~tpl~la~~~~ 203 (209)
T PHA02859 193 YNCYDLIKFRN 203 (209)
T ss_pred CCHHHHHhhhh
Confidence 99999998764
No 59
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.73 E-value=3.1e-17 Score=187.17 Aligned_cols=174 Identities=20% Similarity=0.287 Sum_probs=107.5
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhh-----ccccCCCCcccccccccCcccccccc
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLN-----EQTSLERSSSSLTGNSSDRSSSGSLN 725 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~-----~~~~~~~~~~~l~~~~~~~~~~~~ll 725 (832)
...|+.|+..++... +++|++.|++++...... ......+.++.. ..+..+.|++++++..+... ...+
T Consensus 69 ~t~L~~A~~~~~~~i-v~~Ll~~g~~~~~~~~~~---~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~--~v~~ 142 (434)
T PHA02874 69 PHPLLTAIKIGAHDI-IKLLIDNGVDTSILPIPC---IEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLE--SIKM 142 (434)
T ss_pred CCHHHHHHHcCCHHH-HHHHHHCCCCCCcchhcc---CCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHH--HHHH
Confidence 356888998888764 456667888765422111 122333444332 22334556666655544333 3334
Q ss_pred ccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC------
Q 003309 726 LAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP------ 799 (832)
Q Consensus 726 l~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~------ 799 (832)
|+..|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|+++
T Consensus 143 Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~ 222 (434)
T PHA02874 143 LFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN 222 (434)
T ss_pred HHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCC
Confidence 55566777777777777777777777777777777777777777777777777777777777777777776554
Q ss_pred -------------------------CCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 800 -------------------------RAVNREGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 800 -------------------------~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
+.+|..|.||||+|+..+. +.+++++|+++|
T Consensus 223 g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~-~~~iv~~Ll~~g 278 (434)
T PHA02874 223 GFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPC-DIDIIDILLYHK 278 (434)
T ss_pred CCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCC-cHHHHHHHHHCc
Confidence 4445556666666665441 256777776655
No 60
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.73 E-value=9.2e-18 Score=164.92 Aligned_cols=125 Identities=20% Similarity=0.189 Sum_probs=105.4
Q ss_pred CCcccccccccCccccc--cccccCCCCCCCcCCCCCCcHHHHHHHcCCHH---HHHHHHHcCCCCCccC-CCCCcHHHH
Q 003309 706 RSSSSLTGNSSDRSSSG--SLNLAGTSEGQTMDDLEGCTLLHLACDSADIG---MLELLLQYGANINATD-SRGLTPLHR 779 (832)
Q Consensus 706 ~~~~~l~~~~~~~~~~~--~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~---~v~~Ll~~gadvn~~d-~~g~TpLh~ 779 (832)
.+.++.++..++..... ..++...++.++..|..|+||||+|+..|+.+ ++++|+.+|+++|.+| ..|.||||+
T Consensus 21 ~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~ 100 (166)
T PHA02743 21 QNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHI 100 (166)
T ss_pred CcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHH
Confidence 34455555444433222 22456788889999999999999999998865 4899999999999998 489999999
Q ss_pred HHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 780 CILRGKAMFAKLLLT-RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 780 A~~~g~~~~v~~Ll~-~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|+..|+.+++++|+. .|++++.+|..|.||||+|+..++ .+++++|+++|+
T Consensus 101 A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~--~~iv~~Ll~~ga 152 (166)
T PHA02743 101 AASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRD--RRMMEILRANGA 152 (166)
T ss_pred HHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 999999999999995 799999999999999999999998 999999999875
No 61
>PHA02795 ankyrin-like protein; Provisional
Probab=99.72 E-value=2.6e-17 Score=180.95 Aligned_cols=158 Identities=20% Similarity=0.159 Sum_probs=117.3
Q ss_pred ccceeehhhhc-CchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccC
Q 003309 650 VAHQIWEGVRT-NDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG 728 (832)
Q Consensus 650 ~~~~L~~Av~~-~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~ 728 (832)
....|+.++.. ++..+++++|+.+|||||..+. .++++ .+...+...+..+|+.
T Consensus 116 ~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~~-----------------------~t~lh--~A~~~~~~eIVk~Lls 170 (437)
T PHA02795 116 VQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIEC-----------------------LNAYF--RGICKKESSVVEFILN 170 (437)
T ss_pred ccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCCC-----------------------CCHHH--HHHHcCcHHHHHHHHh
Confidence 34455555551 2334455566677777765322 23333 3333333334444555
Q ss_pred CCCCC-CcC-----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 003309 729 TSEGQ-TMD-----DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV 802 (832)
Q Consensus 729 ~~~~~-~~~-----d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~ 802 (832)
.|++. +.. +..|.||+|.|+..++.+++++|+.+||++|.+|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus 171 ~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~ 250 (437)
T PHA02795 171 CGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAV 250 (437)
T ss_pred cCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence 55532 222 234889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHcCC------CcHHHHHHHhhCCC
Q 003309 803 NREGKTSLELAVESNF------ADSEVLAILSDSHG 832 (832)
Q Consensus 803 ~~~g~TpL~~A~~~g~------~d~~iv~lLl~~gg 832 (832)
|..|.||||+|+..|+ ...+++++|+++|+
T Consensus 251 d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga 286 (437)
T PHA02795 251 MSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL 286 (437)
T ss_pred CCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence 9999999999999884 12689999999774
No 62
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.72 E-value=1.2e-17 Score=195.62 Aligned_cols=179 Identities=18% Similarity=0.176 Sum_probs=134.0
Q ss_pred cceeehhhhcCch-hhhHhhhhccccccccccchhhhhhh----------hHHHHHhhhhcc-ccCCCCccccc---ccc
Q 003309 651 AHQIWEGVRTNDK-KAVYRHIVNFEVDVNAVYEQVSCISS----------LTLAKAMLLNEQ-TSLERSSSSLT---GNS 715 (832)
Q Consensus 651 ~~~L~~Av~~~d~-~~v~~lL~~~gadvN~~~~~~~~~~~----------l~~~~~ll~~~~-~~~~~~~~~l~---~~~ 715 (832)
...|+.|+..++. .+++++|++.|||||..+..+....+ ..+++.++.... ......+..++ .+.
T Consensus 213 ~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA 292 (764)
T PHA02716 213 ITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLA 292 (764)
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHH
Confidence 3568889988874 57888888999999998776633322 223333332211 11112233332 123
Q ss_pred cCccccccccccCCCCCCCcCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH-----------
Q 003309 716 SDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACD--SADIGMLELLLQYGANINATDSRGLTPLHRCIL----------- 782 (832)
Q Consensus 716 ~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~--~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~----------- 782 (832)
..+......+|+..|++++.+|..|+||||+|+. .++.+++++|+++|+++|.+|..|+||||+|+.
T Consensus 293 ~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~ 372 (764)
T PHA02716 293 RNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPE 372 (764)
T ss_pred HcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhcccccc
Confidence 3444555667778999999999999999999864 468999999999999999999999999999875
Q ss_pred ---cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH----HHcCCCcHHHHHHHhhCC
Q 003309 783 ---RGKAMFAKLLLTRGADPRAVNREGKTSLELA----VESNFADSEVLAILSDSH 831 (832)
Q Consensus 783 ---~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A----~~~g~~d~~iv~lLl~~g 831 (832)
.++.+++++|+++|++++.+|..|.||||.| ...++ .+++++|++.|
T Consensus 373 ~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~--~dIvklLis~~ 426 (764)
T PHA02716 373 TDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMY--YDIIDCLISDK 426 (764)
T ss_pred ccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcCh--HHHHHHHHhCc
Confidence 3689999999999999999999999999942 22345 89999999865
No 63
>PHA02791 ankyrin-like protein; Provisional
Probab=99.72 E-value=2.9e-17 Score=174.16 Aligned_cols=164 Identities=11% Similarity=0.064 Sum_probs=131.4
Q ss_pred CchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhccc---cCCCCcccccccccCccccccccccCCC
Q 003309 661 NDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQT---SLERSSSSLTGNSSDRSSSGSLNLAGTS 730 (832)
Q Consensus 661 ~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~---~~~~~~~~l~~~~~~~~~~~~lll~~~~ 730 (832)
-+..+++++|++.|++. .+..+ ...++..+++.|+..+.. ..+.||+++++..+... +..+|+..|
T Consensus 9 ~~~~~~~~~Lis~~a~~--~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~e--iV~lLL~~G 84 (284)
T PHA02791 9 WKSKQLKSFLSSKDAFK--ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTK--IVKILLFSG 84 (284)
T ss_pred cCHHHHHHHHHhCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHH--HHHHHHHCC
Confidence 35567888998888854 33333 334666777777764433 24567777776655443 445566788
Q ss_pred CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCc
Q 003309 731 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGL-TPLHRCILRGKAMFAKLLLTRGADPRAVN-REGKT 808 (832)
Q Consensus 731 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~-TpLh~A~~~g~~~~v~~Ll~~gad~~~~~-~~g~T 808 (832)
++++..|..|+||||+|+..|+.+++++|+.+|++++.++..|+ ||||+|+..|+.++|++|+++|++. .| ..|.|
T Consensus 85 advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~T 162 (284)
T PHA02791 85 MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLS 162 (284)
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCcc
Confidence 99999999999999999999999999999999999999998885 8999999999999999999997654 23 35899
Q ss_pred HHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 809 SLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 809 pL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|||+|+..|+ .+++++|+++|+
T Consensus 163 pLh~Aa~~g~--~eiv~lLL~~gA 184 (284)
T PHA02791 163 CIHITIKNGH--VDMMILLLDYMT 184 (284)
T ss_pred HHHHHHHcCC--HHHHHHHHHCCC
Confidence 9999999999 999999999885
No 64
>PHA02798 ankyrin-like protein; Provisional
Probab=99.72 E-value=2.9e-17 Score=190.06 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=135.4
Q ss_pred ceeehhhhc----CchhhhHhhhhccccccccccchhhhh----------hhhHHHHHhhhhccc-----cCCCCccccc
Q 003309 652 HQIWEGVRT----NDKKAVYRHIVNFEVDVNAVYEQVSCI----------SSLTLAKAMLLNEQT-----SLERSSSSLT 712 (832)
Q Consensus 652 ~~L~~Av~~----~d~~~v~~lL~~~gadvN~~~~~~~~~----------~~l~~~~~ll~~~~~-----~~~~~~~~l~ 712 (832)
..|+.++.. .....++++|+++|+|||..+..+... .+..+++.++..+.+ ..|.||++++
T Consensus 73 TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a 152 (489)
T PHA02798 73 TPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVY 152 (489)
T ss_pred ChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHH
Confidence 445555542 234677888889999999887665322 244566666654433 4567888887
Q ss_pred ccccC-ccccccccccCCCCCCCcCC-CCCCcHHHHHHHc----CCHHHHHHHHHcCCC---------------------
Q 003309 713 GNSSD-RSSSGSLNLAGTSEGQTMDD-LEGCTLLHLACDS----ADIGMLELLLQYGAN--------------------- 765 (832)
Q Consensus 713 ~~~~~-~~~~~~lll~~~~~~~~~~d-~~g~TpLh~Aa~~----g~~~~v~~Ll~~gad--------------------- 765 (832)
+..++ ....+..+|+..|++++..+ ..|.||||.++.. ++.+++++|+++|++
T Consensus 153 ~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~ 232 (489)
T PHA02798 153 LQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLY 232 (489)
T ss_pred HHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHh
Confidence 77665 34555566777888888874 5788999988754 467888888877764
Q ss_pred ------------------CCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHH
Q 003309 766 ------------------INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAIL 827 (832)
Q Consensus 766 ------------------vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lL 827 (832)
+|.+|..|+||||+|+..|+.+++++|+++|||++.+|..|.|||++|+..++ .++++.|
T Consensus 233 ~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~--~~iv~~l 310 (489)
T PHA02798 233 DNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENES--KFIFNSI 310 (489)
T ss_pred hcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCc--HHHHHHH
Confidence 44567789999999999999999999999999999999999999999999988 8999999
Q ss_pred hhCC
Q 003309 828 SDSH 831 (832)
Q Consensus 828 l~~g 831 (832)
++.+
T Consensus 311 L~~~ 314 (489)
T PHA02798 311 LNKK 314 (489)
T ss_pred HccC
Confidence 9876
No 65
>PHA02946 ankyin-like protein; Provisional
Probab=99.72 E-value=2.5e-17 Score=187.09 Aligned_cols=176 Identities=15% Similarity=0.150 Sum_probs=137.4
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchhhhhhh---------hHHHHHhhhhcc------ccCCCCcccccccc
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISS---------LTLAKAMLLNEQ------TSLERSSSSLTGNS 715 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~---------l~~~~~ll~~~~------~~~~~~~~~l~~~~ 715 (832)
...|+.|+..++.+ ++++|+++|+|||..+..+....+ ..+++.|+..+. +..+.+|++ ++..
T Consensus 73 ~TpLh~Aa~~g~~e-iv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~ 150 (446)
T PHA02946 73 NYPLHIASKINNNR-IVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTD 150 (446)
T ss_pred CCHHHHHHHcCCHH-HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHC
Confidence 35688888888765 556777999999998877633332 344555555333 234455664 3333
Q ss_pred cCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC--CHHHHHH
Q 003309 716 SDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD--IGMLELLLQYGANINATDSRGLTPLHRCILRG--KAMFAKL 791 (832)
Q Consensus 716 ~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~--~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g--~~~~v~~ 791 (832)
+ ......+|+..|++++..|..|+||||+|+..++ .+++++|+++|+++|.+|..|+||||+|+..| +.+++++
T Consensus 151 ~--~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~l 228 (446)
T PHA02946 151 P--SERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINL 228 (446)
T ss_pred C--ChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHH
Confidence 2 3334455667899999999999999999887654 78999999999999999999999999999986 8899999
Q ss_pred HHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 792 LLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 792 Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|+. |++++.+|..|.||||+|+..++ ..+++++|+++|+
T Consensus 229 Ll~-gadin~~d~~G~TpLh~A~~~~~-~~~~~~~Ll~~g~ 267 (446)
T PHA02946 229 LLP-STDVNKQNKFGDSPLTLLIKTLS-PAHLINKLLSTSN 267 (446)
T ss_pred HHc-CCCCCCCCCCCCCHHHHHHHhCC-hHHHHHHHHhCCC
Confidence 985 99999999999999999999876 2489999998764
No 66
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.72 E-value=2.7e-17 Score=143.19 Aligned_cols=88 Identities=28% Similarity=0.496 Sum_probs=69.8
Q ss_pred EEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccccc
Q 003309 296 QGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARH 375 (832)
Q Consensus 296 ~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (832)
+|||.|++ +..++|++|||||+ +|.|+||+++.+.. ..+++
T Consensus 2 ~G~L~K~~-~~~k~Wk~RwFvL~-~g~L~Yyk~~~~~~-------------------------------------~~~~G 42 (91)
T cd01247 2 NGVLSKWT-NYINGWQDRYFVLK-EGNLSYYKSEAEKS-------------------------------------HGCRG 42 (91)
T ss_pred ceEEEEec-cccCCCceEEEEEE-CCEEEEEecCccCc-------------------------------------CCCcE
Confidence 69999994 56789999999998 78888888764311 12346
Q ss_pred cccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHH
Q 003309 376 TVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 376 ~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~ 425 (832)
.|+|..|.+... + .++++|+|.++. ++|+|.|+|++|+++||+||+.
T Consensus 43 ~I~L~~~~i~~~--~-~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 43 SIFLKKAIIAAH--E-FDENRFDISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEECcccEEEcC--C-CCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 788888877643 2 236899997665 9999999999999999999974
No 67
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.71 E-value=3e-17 Score=197.89 Aligned_cols=179 Identities=19% Similarity=0.207 Sum_probs=133.6
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhh--------hHHHHHhhhh-----ccccCCCCcccccccccCc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISS--------LTLAKAMLLN-----EQTSLERSSSSLTGNSSDR 718 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~--------l~~~~~ll~~-----~~~~~~~~~~~l~~~~~~~ 718 (832)
..|+.|+..++...++++|+..|+|+|..+..+....+ ...++.++.. ..+..+.|++++++...+.
T Consensus 275 TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~ 354 (682)
T PHA02876 275 TPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRN 354 (682)
T ss_pred CHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCc
Confidence 56777887777777777777888888877665532222 2333334332 2233456777776654443
Q ss_pred cccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC-HHHHHHHHhCCC
Q 003309 719 SSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK-AMFAKLLLTRGA 797 (832)
Q Consensus 719 ~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~-~~~v~~Ll~~ga 797 (832)
.. ...+|+..|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..++++|+++|+
T Consensus 355 ~~-iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~ga 433 (682)
T PHA02876 355 KD-IVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGA 433 (682)
T ss_pred HH-HHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCC
Confidence 33 4455677888999999999999999999999999999999999999888889999999887665 467888999999
Q ss_pred CCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 798 DPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 798 d~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+++.+|..|.||||+|+..|+ ..+++++|++.|+
T Consensus 434 din~~d~~G~TpLh~Aa~~~~-~~~iv~lLl~~Ga 467 (682)
T PHA02876 434 NVNSKNKDLSTPLHYACKKNC-KLDVIEMLLDNGA 467 (682)
T ss_pred CCCcCCCCCChHHHHHHHhCC-cHHHHHHHHHCCC
Confidence 999999999999999988762 2789999988775
No 68
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.71 E-value=5.2e-17 Score=188.26 Aligned_cols=158 Identities=17% Similarity=0.181 Sum_probs=121.6
Q ss_pred eeehhhhcCc-hhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCccccccccc----Ccccccccccc
Q 003309 653 QIWEGVRTND-KKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSS----DRSSSGSLNLA 727 (832)
Q Consensus 653 ~L~~Av~~~d-~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~----~~~~~~~lll~ 727 (832)
.|+.++..++ ..+++++|+++|||||..+. +.||++.++... .+...+..+|+
T Consensus 38 ~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~----------------------~~tpL~~a~~~~~~~~~~~~~iv~~Ll 95 (494)
T PHA02989 38 ILLLYLKRKDVKIKIVKLLIDNGADVNYKGY----------------------IETPLCAVLRNREITSNKIKKIVKLLL 95 (494)
T ss_pred HHHHHHhcCCCChHHHHHHHHcCCCccCCCC----------------------CCCcHHHHHhccCcchhhHHHHHHHHH
Confidence 3545554443 56778888899999987431 235555433222 12233556788
Q ss_pred CCCCCCCcCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCCCC
Q 003309 728 GTSEGQTMDDLEGCTLLHLACDS---ADIGMLELLLQYGANI-NATDSRGLTPLHRCILR--GKAMFAKLLLTRGADPRA 801 (832)
Q Consensus 728 ~~~~~~~~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~gadv-n~~d~~g~TpLh~A~~~--g~~~~v~~Ll~~gad~~~ 801 (832)
..|++++.+|..|.||||.|+.. |+.+++++|+++|||+ +..|..|+||||+|+.. ++.++|++|+++|++++.
T Consensus 96 ~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~ 175 (494)
T PHA02989 96 KFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFE 175 (494)
T ss_pred HCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc
Confidence 89999999999999999988765 6789999999999999 78999999999998764 688999999999999998
Q ss_pred -CCCCCCcHHHHHHHcCC--CcHHHHHHHhhCCC
Q 003309 802 -VNREGKTSLELAVESNF--ADSEVLAILSDSHG 832 (832)
Q Consensus 802 -~~~~g~TpL~~A~~~g~--~d~~iv~lLl~~gg 832 (832)
.+..|.||||+|+..+. .+.+++++|+++|+
T Consensus 176 ~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga 209 (494)
T PHA02989 176 KTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGV 209 (494)
T ss_pred cccccCCChHHHHHhcccccccHHHHHHHHhCCC
Confidence 67889999999987651 23899999999875
No 69
>PHA02917 ankyrin-like protein; Provisional
Probab=99.70 E-value=1.2e-16 Score=188.58 Aligned_cols=177 Identities=14% Similarity=0.130 Sum_probs=131.5
Q ss_pred cceeehhhhc---CchhhhHhhhhccccccccccchhhhh-------hhh----HHHHHhhhhcc--ccCCCCccccccc
Q 003309 651 AHQIWEGVRT---NDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSL----TLAKAMLLNEQ--TSLERSSSSLTGN 714 (832)
Q Consensus 651 ~~~L~~Av~~---~d~~~v~~lL~~~gadvN~~~~~~~~~-------~~l----~~~~~ll~~~~--~~~~~~~~~l~~~ 714 (832)
...||.|+.. |+. .++++|++.|+|||..+..+... +++ .++..++.... +..+.+++ +..+
T Consensus 33 ~t~Lh~a~~~~~~~~~-~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~-~~~a 110 (661)
T PHA02917 33 NNALHAYLFNEHCNNV-EVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIF-SYMK 110 (661)
T ss_pred CcHHHHHHHhhhcCcH-HHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchH-HHHH
Confidence 3567876554 445 45566779999999877654222 222 12334443211 22222222 2344
Q ss_pred ccCccccccccccCCCCCCCcCCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCCccCC---CC-----------CcHHH
Q 003309 715 SSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLAC--DSADIGMLELLLQYGANINATDS---RG-----------LTPLH 778 (832)
Q Consensus 715 ~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa--~~g~~~~v~~Ll~~gadvn~~d~---~g-----------~TpLh 778 (832)
+.++......+|+..|++++..|..|+||||.|+ ..|+.+++++|+++||++|..|. .| .||||
T Consensus 111 ~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~ 190 (661)
T PHA02917 111 SKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLH 190 (661)
T ss_pred hhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHH
Confidence 4555556667778999999999999999999653 57899999999999999987654 24 59999
Q ss_pred HHHH-----------cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhh
Q 003309 779 RCIL-----------RGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSD 829 (832)
Q Consensus 779 ~A~~-----------~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~ 829 (832)
+|+. .++.++|++|+++|+|++.+|.+|.||||+|+..|+.+.++|++|++
T Consensus 191 ~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~ 252 (661)
T PHA02917 191 LYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK 252 (661)
T ss_pred HHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence 9986 46899999999999999999999999999999999866789999986
No 70
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.70 E-value=5.7e-17 Score=187.24 Aligned_cols=160 Identities=24% Similarity=0.246 Sum_probs=98.2
Q ss_pred hhHhhhhccccccccccch-h-------hhhhhhHHHHHhhhhccc-----cCCCCcccccccccCccccccccccCCCC
Q 003309 665 AVYRHIVNFEVDVNAVYEQ-V-------SCISSLTLAKAMLLNEQT-----SLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 665 ~v~~lL~~~gadvN~~~~~-~-------~~~~~l~~~~~ll~~~~~-----~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
+++++|++.|+|+|..+.. + ...+++.+++.|+..+.+ ..|.||+++|+..++.. ...+|+..|+
T Consensus 148 ~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~--iv~~Ll~~ga 225 (477)
T PHA02878 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKP--IVHILLENGA 225 (477)
T ss_pred HHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHH--HHHHHHHcCC
Confidence 4778888999999987765 3 223444555555543222 23455555555443332 3334455666
Q ss_pred CCCcCCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q 003309 732 GQTMDDLEGCTLLHLACDS-ADIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS 809 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~-g~~~~v~~Ll~~gadvn~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~Tp 809 (832)
+++.+|..|.||||+|+.. ++.+++++|+++|+++|.++. .|.||||+| .++.+++++|+++|+|++..|..|.||
T Consensus 226 ~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~Tp 303 (477)
T PHA02878 226 STDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTP 303 (477)
T ss_pred CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 6666666777777776654 566777777777777766664 566777776 356666777777777777777777777
Q ss_pred HHHHHHcCCCcHHHHHHHhh
Q 003309 810 LELAVESNFADSEVLAILSD 829 (832)
Q Consensus 810 L~~A~~~g~~d~~iv~lLl~ 829 (832)
||+|+..+. +.+++++|+.
T Consensus 304 L~~A~~~~~-~~~~~~~li~ 322 (477)
T PHA02878 304 LSSAVKQYL-CINIGRILIS 322 (477)
T ss_pred HHHHHHHcC-ccchHHHHHH
Confidence 777765432 2455555543
No 71
>smart00721 BAR BAR domain.
Probab=99.70 E-value=2.4e-15 Score=157.43 Aligned_cols=201 Identities=25% Similarity=0.374 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hhhcccchhHHHHHHHHHHhhCC--CCCCCcc-ccCchHHHHHHHHHHHHH
Q 003309 16 IQGLEESAEVLRERSLKFYKGCRKYT---EGLGEGYDGDIAFASALETFGGG--HNDPISV-AFGGPVMTKFTIALREIG 89 (832)
Q Consensus 16 i~~~E~~i~~l~~~l~kl~k~~~~~~---~~~~~~~~~~~~f~~~l~~f~~~--~~~~~~~-~~~~~~l~~f~~~l~ei~ 89 (832)
+..+|.+++.++.++++|+|.++.|+ .+..........|...+..+... ....... ...+.+|.+++..+.++.
T Consensus 29 f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 108 (239)
T smart00721 29 FEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEALKKLL 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999 66555555677888888887544 1121111 224568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCC-ch--hHHhHHHHHHHHHHHHHH
Q 003309 90 TYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT-KT--DVAAILEEELHSARSAFE 166 (832)
Q Consensus 90 ~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k-~~--~~~~e~~~~l~~~r~~f~ 166 (832)
..+..+ .++...++.|+.+|+..+++.++..+|++++.+.+||++..|+.++++++ ++ +++.+++.++..+|..|.
T Consensus 109 ~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe 187 (239)
T smart00721 109 QVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFE 187 (239)
T ss_pred hhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999999999999999999998886553 21 267889999999999999
Q ss_pred HHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 003309 167 QARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYIN 217 (832)
Q Consensus 167 ~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~ 217 (832)
....+++..|..+.......++..+.+|+.+|.+||+++++.+.++.|+++
T Consensus 188 ~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 188 ESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998887669999999999999999999999999999874
No 72
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.69 E-value=4e-17 Score=150.95 Aligned_cols=97 Identities=30% Similarity=0.323 Sum_probs=85.3
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE 811 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~ 811 (832)
.+|.+|.+|.||||-|+++|++++|+.|+..||+++++...||||||-||...+.+|+-+||.+|+|||+......||||
T Consensus 89 ~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLh 168 (228)
T KOG0512|consen 89 HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLH 168 (228)
T ss_pred cccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhH
Confidence 34557788999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred HHHHcCCCcHHHHHHHhh
Q 003309 812 LAVESNFADSEVLAILSD 829 (832)
Q Consensus 812 ~A~~~g~~d~~iv~lLl~ 829 (832)
+|+...+. ...+.+|+.
T Consensus 169 laa~~rn~-r~t~~~Ll~ 185 (228)
T KOG0512|consen 169 LAAGNRNS-RDTLELLLH 185 (228)
T ss_pred Hhhcccch-HHHHHHHhh
Confidence 99987652 456666654
No 73
>PHA02741 hypothetical protein; Provisional
Probab=99.69 E-value=5.7e-17 Score=159.98 Aligned_cols=131 Identities=21% Similarity=0.268 Sum_probs=113.3
Q ss_pred hccccCCCCcccccccccCccccccccc-c---CCCCCCCcCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCccC
Q 003309 699 NEQTSLERSSSSLTGNSSDRSSSGSLNL-A---GTSEGQTMDDLEGCTLLHLACDSAD----IGMLELLLQYGANINATD 770 (832)
Q Consensus 699 ~~~~~~~~~~~~l~~~~~~~~~~~~lll-~---~~~~~~~~~d~~g~TpLh~Aa~~g~----~~~v~~Ll~~gadvn~~d 770 (832)
...+..+.+++++++..++...+..++. . ..+++++.+|..|.||||+|+..|+ .+++++|+.+|+++|.++
T Consensus 15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~ 94 (169)
T PHA02741 15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE 94 (169)
T ss_pred hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence 3445567788888887777766554421 2 3468899999999999999999999 589999999999999998
Q ss_pred C-CCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 771 S-RGLTPLHRCILRGKAMFAKLLLT-RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 771 ~-~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
. .|+||||+|+..++.+++++|+. .|++++..|.+|.||||+|+..|+ .+++++|++.+
T Consensus 95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~--~~iv~~L~~~~ 155 (169)
T PHA02741 95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNED--VAMMQILREIV 155 (169)
T ss_pred cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCC--HHHHHHHHHHH
Confidence 5 89999999999999999999998 599999999999999999999998 89999998753
No 74
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.69 E-value=5.2e-17 Score=193.34 Aligned_cols=176 Identities=23% Similarity=0.329 Sum_probs=143.5
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhh-------hhhhHHHHHhhhhc-----cccCCCCcccccccccCcc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSC-------ISSLTLAKAMLLNE-----QTSLERSSSSLTGNSSDRS 719 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~-------~~~l~~~~~ll~~~-----~~~~~~~~~~l~~~~~~~~ 719 (832)
..++.|+..+....+..++...|+++|.....+.. .++.....+++... ....+-+++++++......
T Consensus 442 T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~ 521 (1143)
T KOG4177|consen 442 TPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVK 521 (1143)
T ss_pred ChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHH
Confidence 44677777776666667777889999987776633 44555555555422 2233445666655554444
Q ss_pred ccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 003309 720 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 799 (832)
Q Consensus 720 ~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 799 (832)
. ...+...|++++.++.+|.||||.||..|++.+|++||++|||++++|+.|+||||.||..|+.+|+.+|+++||++
T Consensus 522 ~--~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v 599 (1143)
T KOG4177|consen 522 V--AKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASV 599 (1143)
T ss_pred H--HHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCC
Confidence 3 34567789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 800 RAVNREGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 800 ~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
|..|.+|.|||++|+..|+ .+++++|+..+
T Consensus 600 na~d~~g~TpL~iA~~lg~--~~~~k~l~~~~ 629 (1143)
T KOG4177|consen 600 NAADLDGFTPLHIAVRLGY--LSVVKLLKVVT 629 (1143)
T ss_pred CcccccCcchhHHHHHhcc--cchhhHHHhcc
Confidence 9999999999999999999 88999998765
No 75
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.69 E-value=9.2e-17 Score=141.57 Aligned_cols=94 Identities=21% Similarity=0.364 Sum_probs=70.6
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCCc-----eEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCC
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRG-----MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH 367 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~~-----~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (832)
+.|+|||.|+ ++|+||||||+.+. .|.||+++.+....
T Consensus 2 v~k~GyL~K~-----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~-------------------------------- 44 (101)
T cd01257 2 VRKSGYLRKQ-----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQK-------------------------------- 44 (101)
T ss_pred ccEEEEEeEe-----cCcEeEEEEEecCCCCCCceEEEECChhhcccc--------------------------------
Confidence 4689999998 68999999999542 79999886532100
Q ss_pred CccccccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHH
Q 003309 368 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 368 ~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~ 425 (832)
...+.+.|.|..|.......+..++|+|+|.||+++|+|+|+|++|+++||.+|..
T Consensus 45 --~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 45 --GSAPKRVIPLESCFNINKRADAKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred --CCCceEEEEccceEEEeeccccccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 01234557777776543333334569999999999999999999999999999863
No 76
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.68 E-value=9.7e-17 Score=179.82 Aligned_cols=173 Identities=21% Similarity=0.229 Sum_probs=144.6
Q ss_pred cccceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccC
Q 003309 649 SVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG 728 (832)
Q Consensus 649 ~~~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~ 728 (832)
+....|+.|+..||.+.+..+| +.|+.+...--+ .......+.+..+.+|.||+|+++..++...+ -+|++
T Consensus 224 ~~~~pLhlAve~g~~e~lk~~L-~n~~~~a~~~~~------~~~q~kelv~~~d~dg~tpLH~a~r~G~~~sv--d~Ll~ 294 (929)
T KOG0510|consen 224 EKATPLHLAVEGGDIEMLKMCL-QNGKKIADVQLD------AMQQEKELVNDEDNDGCTPLHYAARQGGPESV--DNLLG 294 (929)
T ss_pred CCCcchhhhhhcCCHHHHHHHH-hCccccchhhhH------HHHHHHHHhhcccccCCchHHHHHHcCChhHH--HHHHH
Confidence 3456799999999999998887 555533221100 12233456688889999999999888776654 45778
Q ss_pred CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHH-cC-CCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC---CCC
Q 003309 729 TSEGQTMDDLEGCTLLHLACDSADIGMLELLLQ-YG-ANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR---AVN 803 (832)
Q Consensus 729 ~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~g-advn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~---~~~ 803 (832)
.|++++.++.++.||||.||..|+..+|+.||+ .| ...|..|..|.||||+|+..||..++++||+.||... ..|
T Consensus 295 ~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D 374 (929)
T KOG0510|consen 295 FGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEAD 374 (929)
T ss_pred cCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccc
Confidence 899999999999999999999999999999999 55 4688999999999999999999999999999999987 459
Q ss_pred CCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 804 REGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 804 ~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
.+|.||||+|+..|+ ..+|++|+.+|+
T Consensus 375 ~dg~TaLH~Aa~~g~--~~av~~Li~~Ga 401 (929)
T KOG0510|consen 375 SDGNTALHLAAKYGN--TSAVQKLISHGA 401 (929)
T ss_pred cCCchhhhHHHHhcc--HHHHHHHHHcCC
Confidence 999999999999999 999999999885
No 77
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.68 E-value=1.4e-16 Score=194.77 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=134.0
Q ss_pred ccceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCC
Q 003309 650 VAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGT 729 (832)
Q Consensus 650 ~~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~ 729 (832)
....|+.|+..|+...+..+ ++.|+|+|..+..+ .|++|+|+..++... ..+|+..
T Consensus 525 ~~~~L~~Aa~~g~~~~l~~L-l~~G~d~n~~d~~G---------------------~TpLh~Aa~~g~~~~--v~~Ll~~ 580 (823)
T PLN03192 525 MASNLLTVASTGNAALLEEL-LKAKLDPDIGDSKG---------------------RTPLHIAASKGYEDC--VLVLLKH 580 (823)
T ss_pred chhHHHHHHHcCCHHHHHHH-HHCCCCCCCCCCCC---------------------CCHHHHHHHcChHHH--HHHHHhc
Confidence 34668999999998766555 48999999866554 688888877665444 4456678
Q ss_pred CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q 003309 730 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS 809 (832)
Q Consensus 730 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~Tp 809 (832)
|++++.+|.+|.||||+|+..|+.+++++|+..++..+. ..|.+|||+|+..|+.+++++|+++|+|++.+|.+|.||
T Consensus 581 gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~Tp 658 (823)
T PLN03192 581 ACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATA 658 (823)
T ss_pred CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 999999999999999999999999999999998887653 457799999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcHHHHHHHhhCCC
Q 003309 810 LELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 810 L~~A~~~g~~d~~iv~lLl~~gg 832 (832)
||+|+..|+ .+++++|+++|+
T Consensus 659 Lh~A~~~g~--~~iv~~Ll~~GA 679 (823)
T PLN03192 659 LQVAMAEDH--VDMVRLLIMNGA 679 (823)
T ss_pred HHHHHHCCc--HHHHHHHHHcCC
Confidence 999999999 999999999885
No 78
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.67 E-value=1.8e-16 Score=140.75 Aligned_cols=91 Identities=27% Similarity=0.557 Sum_probs=69.9
Q ss_pred EEEEEEecCCC---CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 295 RQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 295 k~G~L~K~~~~---~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
++|||+|+++. ..+.|+||||||. ++.|+||+++.+.
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~-~~~L~yyk~~~~~--------------------------------------- 41 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLK-GTTLYWYRSKQDE--------------------------------------- 41 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEE-CCEEEEECCCCCC---------------------------------------
Confidence 58999999643 3458999999999 6777888775431
Q ss_pred cccccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
.+.+.|.|..++|... .+..++|||.|++|+ ++|+|+|+|++|+++||.+|++|
T Consensus 42 ~~~~~I~L~~~~v~~~-~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 42 KAEGLIFLSGFTIESA-KEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred ccceEEEccCCEEEEc-hhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 1123466666666543 234588999999998 99999999999999999999864
No 79
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.67 E-value=5e-16 Score=164.60 Aligned_cols=137 Identities=22% Similarity=0.286 Sum_probs=103.2
Q ss_pred HHHHHHHhhhhhhcCCCCCcccccccceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCC
Q 003309 626 KFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLE 705 (832)
Q Consensus 626 ~~I~~KY~~k~fv~~~~~~~~~~~~~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~ 705 (832)
-++|--|+--...-+..+. ......|+.|+..++.+ ++++|+++|+|+|..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~d~---~~~~~lL~~A~~~~~~e-ivk~LL~~GAdiN~~~~~---------------------- 65 (300)
T PHA02884 12 LLCRIFYIIFYIAIKKKNK---ICIANILYSSIKFHYTD-IIDAILKLGADPEAPFPL---------------------- 65 (300)
T ss_pred HHHHHHHHHHHHHhhccCc---CCCCHHHHHHHHcCCHH-HHHHHHHCCCCccccCcc----------------------
Confidence 3455555544442222221 12334577788777766 556667999999874320
Q ss_pred CCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHcC
Q 003309 706 RSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD-SRGLTPLHRCILRG 784 (832)
Q Consensus 706 ~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~g 784 (832)
.+..|.||||+|+..|+.+++++|+++|||+|..+ ..|.||||+|+..|
T Consensus 66 ------------------------------sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~ 115 (300)
T PHA02884 66 ------------------------------SENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHG 115 (300)
T ss_pred ------------------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcC
Confidence 13468999999999999999999999999999864 57999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 003309 785 KAMFAKLLLTRGADPRAVNREGKTSLELAVESNF 818 (832)
Q Consensus 785 ~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~ 818 (832)
+.+++++|+.+|++++.+|..|.||||+|+..++
T Consensus 116 ~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~ 149 (300)
T PHA02884 116 CLKCLEILLSYGADINIQTNDMVTPIELALMICN 149 (300)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCC
Confidence 9999999999999999999999999999988654
No 80
>PHA02946 ankyin-like protein; Provisional
Probab=99.67 E-value=2.4e-16 Score=179.07 Aligned_cols=168 Identities=15% Similarity=0.233 Sum_probs=138.3
Q ss_pred CchhhhHhhhhccccccccccchhh-------hhhhhHHHHHhhhhcc-----ccCCCCcccccccccCccccccccccC
Q 003309 661 NDKKAVYRHIVNFEVDVNAVYEQVS-------CISSLTLAKAMLLNEQ-----TSLERSSSSLTGNSSDRSSSGSLNLAG 728 (832)
Q Consensus 661 ~d~~~v~~lL~~~gadvN~~~~~~~-------~~~~l~~~~~ll~~~~-----~~~~~~~~~l~~~~~~~~~~~~lll~~ 728 (832)
+....++++|++.|+|||..+..+. ..++..+++.|+..+. +..+.||+++++...........+|+.
T Consensus 49 ~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~ 128 (446)
T PHA02946 49 GLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ 128 (446)
T ss_pred CCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence 3345677788899999999887763 3455677888877543 356788998877655555555667888
Q ss_pred CCCCCCc-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCC
Q 003309 729 TSEGQTM-DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRG--KAMFAKLLLTRGADPRAVNRE 805 (832)
Q Consensus 729 ~~~~~~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~~~~ 805 (832)
.|++++. .|.+|.|||| ||..|+.+++++|+..|++++.+|..|+||||+|+..+ +.+++++|+++|++++.+|.+
T Consensus 129 ~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~ 207 (446)
T PHA02946 129 YGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHD 207 (446)
T ss_pred cCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCC
Confidence 9999995 6889999998 66779999999999999999999999999999998755 468999999999999999999
Q ss_pred CCcHHHHHHHcCCCcHHHHHHHhh
Q 003309 806 GKTSLELAVESNFADSEVLAILSD 829 (832)
Q Consensus 806 g~TpL~~A~~~g~~d~~iv~lLl~ 829 (832)
|.||||+|+..|+.+.+++++|++
T Consensus 208 G~TpLH~Aa~~~~~~~~iv~lLl~ 231 (446)
T PHA02946 208 GNTPLHIVCSKTVKNVDIINLLLP 231 (446)
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHc
Confidence 999999999987445899999985
No 81
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.67 E-value=1.9e-16 Score=140.03 Aligned_cols=93 Identities=41% Similarity=0.740 Sum_probs=70.8
Q ss_pred EEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccccc
Q 003309 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 374 (832)
Q Consensus 295 k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (832)
|+|||.|+++...+.|++|||+|+ ++.|+||+.+... ...+.
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~-~~~l~~y~~~~~~-------------------------------------~~~~~ 42 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLK-NGQLTYHHRLKDY-------------------------------------DNAHV 42 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEe-CCeEEEEcCCccc-------------------------------------ccccc
Confidence 589999997655678999999999 6777777665321 01112
Q ss_pred ccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHH
Q 003309 375 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 375 ~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~ 425 (832)
..|++..+++....+..++++||+|++++++|+|+|+|++|+++||.||++
T Consensus 43 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 43 KEIDLRRCTVRHNGKQPDRRFCFEVISPTKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred eEEeccceEEecCccccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHhc
Confidence 346666666665444334789999999999999999999999999999975
No 82
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=99.67 E-value=1.9e-14 Score=145.40 Aligned_cols=193 Identities=14% Similarity=0.217 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh------------------HHHHHHHHHHhhCCCCCCCccccCch
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDG------------------DIAFASALETFGGGHNDPISVAFGGP 76 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~------------------~~~f~~~l~~f~~~~~~~~~~~~~~~ 76 (832)
-+..+|.+++..+.|+++|.+....|++. +..+.+ ...+..++.+.+....... ..|.
T Consensus 18 df~~le~~~d~~~~~~e~i~~~~~~~lqp-Np~~r~~~~~~~k~~~~~~~~~~~~e~Lg~~M~~~g~~lg~~S---~~g~ 93 (229)
T cd07594 18 HFENLLQRADKTKVWTEKILKQTEAVLQP-NPNVRVEDFIYEKLDRKKPDRLSNLEQLGQAMIEAGNDFGPGT---AYGS 93 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhhhHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHhhCCCCC---chHH
Confidence 45678999999999999999999999974 322222 2355556656655443332 3568
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHH
Q 003309 77 VMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEE 156 (832)
Q Consensus 77 ~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~ 156 (832)
+|.+||.+.+.|+..+..+...+...|+.||++|+..||+.+...||+.+..+.+||++..|+.+.+ .++....++.
T Consensus 94 aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~r~~kAk---~~~~~~~~e~ 170 (229)
T cd07594 94 ALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACKTRVKKAK---SAEAIEQAEQ 170 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CccchhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999976553 3343456678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003309 157 ELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPY 215 (832)
Q Consensus 157 ~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~ 215 (832)
++..+...|.++.=+....|..+... +.+.+..|..|+.||..||+++++++.++.+.
T Consensus 171 elr~Ae~kF~~~~E~a~~~M~~i~~~-~~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 228 (229)
T cd07594 171 DLRVAQSEFDRQAEITKLLLEGISST-HANHLRCLRDFVEAQMTYYAQCYQYMDDLQRQ 228 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999998888888888775 45899999999999999999999999988753
No 83
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.66 E-value=4.8e-16 Score=187.49 Aligned_cols=177 Identities=20% Similarity=0.210 Sum_probs=133.0
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhh-------hhhhhHHHHHhhh--------------------------
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVS-------CISSLTLAKAMLL-------------------------- 698 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~-------~~~~l~~~~~ll~-------------------------- 698 (832)
..|+.|+..|+.+ ++++|++.|+|+|..+..+. ..++..+++.++.
T Consensus 180 TpLh~Aa~~G~~~-iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~ 258 (682)
T PHA02876 180 TPIHYAAERGNAK-MVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLL 258 (682)
T ss_pred CHHHHHHHCCCHH-HHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHH
Confidence 5688899988876 55666699999998655432 1222333333221
Q ss_pred --------hccccCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCcc
Q 003309 699 --------NEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSA-DIGMLELLLQYGANINAT 769 (832)
Q Consensus 699 --------~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g-~~~~v~~Ll~~gadvn~~ 769 (832)
+..+..+.||+++++..++.. ....+|+..|++++..|..|.||||+|+..| +.+++++|+..|++++..
T Consensus 259 Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~-~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~ 337 (682)
T PHA02876 259 LYDAGFSVNSIDDCKNTPLHHASQAPSLS-RLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAA 337 (682)
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHhCCCHH-HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCc
Confidence 122234677888777655432 2345567788899999999999999999988 588899999999999988
Q ss_pred CCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 770 DSRGLTPLHRCILR-GKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 770 d~~g~TpLh~A~~~-g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|..|.||||+|+.. ++.+++.+|++.|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 338 d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~--~~iv~~Ll~~ga 399 (682)
T PHA02876 338 DRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNN--VVIINTLLDYGA 399 (682)
T ss_pred ccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCC--HHHHHHHHHCCC
Confidence 88899999998875 46788888888899999999899999999998888 888888888764
No 84
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.66 E-value=1.2e-16 Score=155.32 Aligned_cols=130 Identities=20% Similarity=0.233 Sum_probs=106.6
Q ss_pred hccccCCCCcccccccccCccccccccccCC-----CCCCCcCCCCCCcHHHHHHHcCCH---HHHHHHHHcCCCCCccC
Q 003309 699 NEQTSLERSSSSLTGNSSDRSSSGSLNLAGT-----SEGQTMDDLEGCTLLHLACDSADI---GMLELLLQYGANINATD 770 (832)
Q Consensus 699 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~-----~~~~~~~d~~g~TpLh~Aa~~g~~---~~v~~Ll~~gadvn~~d 770 (832)
+..+..|.||+++++..++ .+..+..... +..++..|..|.||||+|+..|+. +++++|+..|+++|.+|
T Consensus 11 ~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~ 88 (154)
T PHA02736 11 SEPDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE 88 (154)
T ss_pred HhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence 4455678899999887765 2211111111 112334688999999999999986 46899999999999998
Q ss_pred C-CCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 771 S-RGLTPLHRCILRGKAMFAKLLLT-RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 771 ~-~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
. .|+||||+|+..|+.+++++|+. .|++++.+|..|.||||+|+..|+ .+++++|+.+|+
T Consensus 89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~--~~i~~~Ll~~ga 150 (154)
T PHA02736 89 RVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHD--AKMMNILRAKGA 150 (154)
T ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 5 89999999999999999999998 499999999999999999999998 999999999875
No 85
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.65 E-value=4.3e-16 Score=139.78 Aligned_cols=91 Identities=29% Similarity=0.510 Sum_probs=66.9
Q ss_pred EEEEEecCCCCCCCCceeEEEEeC-CceEEEEecCCC-CCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccc
Q 003309 296 QGYLSKRSSNLRGDWKRRFFVLDS-RGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (832)
Q Consensus 296 ~G~L~K~~~~~~~~WkrRwfvL~~-~~~l~yy~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (832)
+|||.|+++ ..+.|+||||+|.+ ++.|+||+++.+ .|.
T Consensus 2 ~G~L~K~g~-~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~--------------------------------------- 41 (101)
T cd01235 2 EGYLYKRGA-LLKGWKPRWFVLDPDKHQLRYYDDFEDTAEK--------------------------------------- 41 (101)
T ss_pred eEEEEEcCC-CCCCccceEEEEECCCCEEEEecCCCCCccc---------------------------------------
Confidence 799999965 56799999999996 358888887643 222
Q ss_pred cccccccccccc-c------CCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 374 RHTVNLLTSTIK-V------DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 374 ~~~i~l~~~~v~-~------~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
+.|+|..++.. . .+....+.++|+|.++.|+|+|+|+|++|+++||.||+++|
T Consensus 42 -g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 42 -GCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred -eEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 23444332211 1 11223457889999999999999999999999999999875
No 86
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.64 E-value=3.6e-16 Score=136.33 Aligned_cols=91 Identities=21% Similarity=0.304 Sum_probs=70.0
Q ss_pred EEEEEEecCCCCCCCCceeEEEEeC---CceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 295 RQGYLSKRSSNLRGDWKRRFFVLDS---RGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 295 k~G~L~K~~~~~~~~WkrRwfvL~~---~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
+.|||.|++++..|.||+|||+|.. ++.+||++...+..
T Consensus 1 ~~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~-------------------------------------- 42 (98)
T cd01245 1 KKGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTK-------------------------------------- 42 (98)
T ss_pred CCCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCCC--------------------------------------
Confidence 3699999987657899999999973 48899988765421
Q ss_pred cccccccccccccccCCcc-cCCcceEEEecCCc--eEEEEeCCHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIKVDADQ-SDLRFCFRIISPTK--NYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~~-~~r~~~F~I~t~~r--t~~lqA~s~~e~~~Wi~ai~~ 425 (832)
+.+.|++..+.|++..+. ..|+|||+|+++.+ +|+++|++ +|+++||++|+.
T Consensus 43 -p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 43 -PIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred -ccceeeccccEEEEccccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 123356666666653232 37899999999986 89999999 999999999974
No 87
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=99.64 E-value=7.3e-14 Score=139.70 Aligned_cols=188 Identities=17% Similarity=0.270 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHH-----------------------HHHHHHHHhhCCCCCCCcc
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDI-----------------------AFASALETFGGGHNDPISV 71 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~-----------------------~f~~~l~~f~~~~~~~~~~ 71 (832)
-+..+|.+++..+.|+++|.|....|++. +..+.+.. .+..++.+++.......
T Consensus 8 ~f~~le~~~d~t~~~~~~l~~~t~~~Lqp-NP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS-- 84 (223)
T cd07615 8 DFQEMERKIDVTNKVVAELLSKTTEYLQP-NPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLRYGRELGEES-- 84 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHHhcccccCCCCCchhHHHHHHHHHHhhCCCCC--
Confidence 46789999999999999999999999995 44444333 44444444444332222
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHH
Q 003309 72 AFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVA 151 (832)
Q Consensus 72 ~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~ 151 (832)
..|.+|.+||.+.+.|+..+..+..++...|+.||++|+..||+.+...||+.+..+.+||++..|. .+. ..+
T Consensus 85 -~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~---~k~-~~e-- 157 (223)
T cd07615 85 -TFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQ---GKI-PDE-- 157 (223)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCC-cHH--
Confidence 3567899999999999999999999999999999999999999999999999999999999877664 221 223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 003309 152 AILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQ 218 (832)
Q Consensus 152 ~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~ 218 (832)
++..++..|..+.=+....|..+... +.+.+..|..|+.||..||+++.++|+++.+.+.+
T Consensus 158 -----E~~~A~~kfees~E~a~~~M~n~le~-e~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~~ 218 (223)
T cd07615 158 -----EIRQAVEKFEESKELAERSMFNFLEN-DVEQVSQLSVLIEAALDYHRQSTEILEDLQSKLQN 218 (223)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555444 67999999999999999999999999999888764
No 88
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.64 E-value=6e-16 Score=173.55 Aligned_cols=179 Identities=21% Similarity=0.220 Sum_probs=135.2
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchhhhh-------hhhHHHHHhhh----------hccccCCCCcccccc
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLL----------NEQTSLERSSSSLTG 713 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~-------~~l~~~~~ll~----------~~~~~~~~~~~~l~~ 713 (832)
.+.||.|+..+..+ +.++|++.|+|+-..+..+-+. +........+- +-.+..+.+|+++++
T Consensus 155 ~TpLh~A~~~~~~E-~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAv 233 (929)
T KOG0510|consen 155 FTPLHLAARKNKVE-AKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAV 233 (929)
T ss_pred CchhhHHHhcChHH-HHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhh
Confidence 34677777777777 6677778888876555444222 11111111111 222235568888888
Q ss_pred cccCccccccccccCCCCC-------------CCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Q 003309 714 NSSDRSSSGSLNLAGTSEG-------------QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRC 780 (832)
Q Consensus 714 ~~~~~~~~~~lll~~~~~~-------------~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A 780 (832)
..++.......|-.+.+.. ++..|.+|.||||+||..|+++.+..|+..|++++.++.++.||||.|
T Consensus 234 e~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~A 313 (929)
T KOG0510|consen 234 EGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFA 313 (929)
T ss_pred hcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHH
Confidence 7777666555443333322 345689999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHh-CC-CCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 781 ILRGKAMFAKLLLT-RG-ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 781 ~~~g~~~~v~~Ll~-~g-ad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+.+|+..+|+-||+ .| ...+..|..|.||||+|+..|| ..++++|++.|+
T Consensus 314 A~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH--~~v~qlLl~~GA 365 (929)
T KOG0510|consen 314 AIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGH--DRVVQLLLNKGA 365 (929)
T ss_pred HHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCH--HHHHHHHHhcCh
Confidence 99999999999998 54 5678889999999999999999 899999999885
No 89
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.64 E-value=2.7e-16 Score=150.84 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=120.9
Q ss_pred HhhhhccccccccccchhhhhhhhHHHHHhh----------hhccccCCCCcccccccccCccccccccccCCCCCCCcC
Q 003309 667 YRHIVNFEVDVNAVYEQVSCISSLTLAKAML----------LNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMD 736 (832)
Q Consensus 667 ~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll----------~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~ 736 (832)
...++.+|+..|.++.-+.+..++.+.+.-+ .+..+..|.||+.++++.++ +.+..+|+..|++++.-
T Consensus 112 ~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~--i~vV~fLL~~GAdp~~l 189 (296)
T KOG0502|consen 112 VSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKGH--IPVVQFLLNSGADPDAL 189 (296)
T ss_pred eeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHHhcCc--hHHHHHHHHcCCChhhh
Confidence 3445577777777665554444444433211 13333455677776666554 44556677888888888
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 003309 737 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES 816 (832)
Q Consensus 737 d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~ 816 (832)
.....|+|.+|+..|..++|++||.++.|||..|.+|.|||.||++.+|.+||+.||..||+++..+..|.+++.+|+..
T Consensus 190 gk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAVal 269 (296)
T KOG0502|consen 190 GKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVAL 269 (296)
T ss_pred hhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHhhC
Q 003309 817 NFADSEVLAILSDS 830 (832)
Q Consensus 817 g~~d~~iv~lLl~~ 830 (832)
|+ .+|+..++.
T Consensus 270 Gy---r~Vqqvie~ 280 (296)
T KOG0502|consen 270 GY---RIVQQVIEK 280 (296)
T ss_pred hh---HHHHHHHHH
Confidence 87 377777664
No 90
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.63 E-value=4.7e-16 Score=134.61 Aligned_cols=96 Identities=26% Similarity=0.499 Sum_probs=69.1
Q ss_pred EEEEEEecCCC-CCCCCceeEEEEeC-CceEEEE---ecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 295 RQGYLSKRSSN-LRGDWKRRFFVLDS-RGMLYYY---RKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 295 k~G~L~K~~~~-~~~~WkrRwfvL~~-~~~l~yy---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
|+||||+|.++ .+.+|.|.||+.+. ++.+.+. ....... .|.+.
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~-----------------------------~g~v~-- 49 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDM-----------------------------KGAVA-- 49 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEeccccccccc-----------------------------Ccccc--
Confidence 58999999865 44589999999885 3443221 1100000 11111
Q ss_pred cccccccccccccccccCCcccCCcceEEEecCCc--eEEEEeCCHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK--NYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~r--t~~lqA~s~~e~~~Wi~ai~~ 425 (832)
..+.|+|..|++++ .++.||||||+|+++.+ +++|||+|+.++..||+||++
T Consensus 50 ---~~e~~~l~sc~~r~-~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~dg 103 (104)
T cd01249 50 ---QDETLTLKSCSRRK-TESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMDG 103 (104)
T ss_pred ---cceEEeeeeccccc-cCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhcC
Confidence 12457888999985 67789999999999987 899999999999999999864
No 91
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.63 E-value=4.7e-16 Score=159.65 Aligned_cols=154 Identities=23% Similarity=0.262 Sum_probs=120.6
Q ss_pred cceeehhhhcCchhhhHhhhhcccc-ccccccchhhhhhhhHHHHHhhhhccccCCCCccccccccc---Cccccccccc
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEV-DVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSS---DRSSSGSLNL 726 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~ga-dvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~---~~~~~~~lll 726 (832)
+.+||.+|...|...|..|| +.|+ |||..+..| .+|.+|++... ..+..+++-|
T Consensus 269 NTALHYsVSHaNF~VV~~LL-DSgvC~VD~qNrAG---------------------YtpiMLaALA~lk~~~d~~vV~~L 326 (452)
T KOG0514|consen 269 NTALHYAVSHANFDVVSILL-DSGVCDVDQQNRAG---------------------YTPVMLAALAKLKQPADRTVVERL 326 (452)
T ss_pred CeeeeeeecccchHHHHHHh-ccCccccccccccc---------------------ccHHHHHHHHhhcchhhHHHHHHH
Confidence 57899999999998776665 6665 998866655 34444433221 1122222223
Q ss_pred cCCCCCCCcC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCC
Q 003309 727 AGTSEGQTMD-DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR-GADPRAVNR 804 (832)
Q Consensus 727 ~~~~~~~~~~-d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~~~ 804 (832)
-..| |+|.+ ...|+|+|++|+.+|+.++|+.||..|||||.+|.+|.|+|+.||.+||.+||++||.. ++|+...|.
T Consensus 327 F~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~ 405 (452)
T KOG0514|consen 327 FKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDV 405 (452)
T ss_pred Hhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecC
Confidence 3332 34443 45799999999999999999999999999999999999999999999999999999986 899999999
Q ss_pred CCCcHHHHHHHcCCCcHHHHHHHhh
Q 003309 805 EGKTSLELAVESNFADSEVLAILSD 829 (832)
Q Consensus 805 ~g~TpL~~A~~~g~~d~~iv~lLl~ 829 (832)
+|.|+|.+|...|| .||.-||-.
T Consensus 406 DgSTAl~IAleagh--~eIa~mlYa 428 (452)
T KOG0514|consen 406 DGSTALSIALEAGH--REIAVMLYA 428 (452)
T ss_pred CCchhhhhHHhcCc--hHHHHHHHH
Confidence 99999999999999 777777643
No 92
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.63 E-value=1.1e-15 Score=138.33 Aligned_cols=91 Identities=24% Similarity=0.441 Sum_probs=65.7
Q ss_pred EEEEEecCCC---CCCCCceeEEEEeCCce------EEEEecCCC-CCCCCCCCCccccCcCccCCCccccccccccCCC
Q 003309 296 QGYLSKRSSN---LRGDWKRRFFVLDSRGM------LYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG 365 (832)
Q Consensus 296 ~G~L~K~~~~---~~~~WkrRwfvL~~~~~------l~yy~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (832)
+|||.|+++. .+++|+||||||+++++ |+||+++.+ ++.
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~------------------------------- 50 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLE------------------------------- 50 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCccc-------------------------------
Confidence 7999999653 24699999999997665 788887543 222
Q ss_pred CCCccccccccccccccccccC-----CcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHH
Q 003309 366 VHDEKSAARHTVNLLTSTIKVD-----ADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 366 ~~~~~~~~~~~i~l~~~~v~~~-----~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
+.|+|..+.+... .......|.|.|.++.|+|+|.|+|++||++||.+|+..
T Consensus 51 ---------g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 51 ---------FVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred ---------eEEECCccEEEcccccccccCcccceEEEEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 3355544433211 111123578999999999999999999999999999764
No 93
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.63 E-value=1.6e-15 Score=141.39 Aligned_cols=92 Identities=30% Similarity=0.659 Sum_probs=70.4
Q ss_pred EEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccccc
Q 003309 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 374 (832)
Q Consensus 295 k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (832)
|+|||.|+++. .+.|+||||+|. ++.|+||+++.+. .+.
T Consensus 2 k~G~L~K~~~~-~~~WkkRwfvL~-~~~L~yyk~~~~~---------------------------------------~~~ 40 (125)
T cd01252 2 REGWLLKQGGR-VKTWKRRWFILT-DNCLYYFEYTTDK---------------------------------------EPR 40 (125)
T ss_pred cEEEEEEeCCC-CCCeEeEEEEEE-CCEEEEEcCCCCC---------------------------------------Cce
Confidence 68999999654 578999999999 5677888765421 123
Q ss_pred ccccccccccccCCcccCCcceEEEecCC---------------------ceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 375 HTVNLLTSTIKVDADQSDLRFCFRIISPT---------------------KNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 375 ~~i~l~~~~v~~~~~~~~r~~~F~I~t~~---------------------rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
+.|.|..+.|... ++..+++||+|.+++ ++|+|+|+|++|+.+||.||+.+|.
T Consensus 41 g~I~L~~~~v~~~-~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 41 GIIPLENVSIREV-EDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred EEEECCCcEEEEc-ccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 4466666666543 334578999998765 5899999999999999999999875
No 94
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=99.62 E-value=1.6e-13 Score=137.57 Aligned_cols=190 Identities=21% Similarity=0.289 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---------hhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHH
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGY---------DGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIAL 85 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~---------~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l 85 (832)
-+..+|.+++..+..+++|.+.+..|++.+.+.. .....+..++...+....+.. ..|.+|.+||++.
T Consensus 8 df~~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS---~~G~aL~~~G~a~ 84 (215)
T cd07593 8 EFLELEKEIELRKEGMERLHRSTEAYVEYLSKKKPLLDDKDKCLPVEALGLVMINHGEEFPQDS---EYGSCLSKLGRAH 84 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCChHHHHHHHHHHHHhhCCCCC---hHHHHHHHHHHHH
Confidence 3567999999999999999999999999655542 124567777777766553332 3578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHH
Q 003309 86 REIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAF 165 (832)
Q Consensus 86 ~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f 165 (832)
..|+..+..+...+...|+.||++|+. |++.+...||+.+..|.+||++.+|+.+.++.. ...+.++..++..|
T Consensus 85 ~kia~~q~~f~~~~~~~~l~pL~~~l~-~~k~i~k~RKkLe~rRLdyD~~ksk~~kak~~~-----~~~eeElr~Ae~kf 158 (215)
T cd07593 85 CKIGTLQEEFADRLSDTFLANIERSLA-EMKEYHSARKKLESRRLAYDAALTKSQKAKKED-----SRLEEELRRAKAKY 158 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHH
Confidence 999999999999999999999999995 899999999999999999999999988775542 34567888999999
Q ss_pred HHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003309 166 EQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (832)
Q Consensus 166 ~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~ 214 (832)
..+.=+....|..+... +.+.+..|..|+.||..||++++++|.++..
T Consensus 159 ees~E~a~~~M~~i~~~-e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~ 206 (215)
T cd07593 159 EESSEDVEARMVAIKES-EADQYRDLTDLLDAELDYHQQSLDVLREVRQ 206 (215)
T ss_pred HHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998999999988776 4589999999999999999999999988754
No 95
>PHA02917 ankyrin-like protein; Provisional
Probab=99.62 E-value=1.6e-15 Score=179.03 Aligned_cols=152 Identities=21% Similarity=0.208 Sum_probs=120.5
Q ss_pred eeehhhhcCch-hhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCC
Q 003309 653 QIWEGVRTNDK-KAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 653 ~L~~Av~~~d~-~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
.++.++..|+. ..++++|++.|||||..+..+ .+ +. ......++..+|...|+
T Consensus 334 ~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g---------------------~~----~~-~~~~~~~i~~LL~~~ga 387 (661)
T PHA02917 334 ILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHG---------------------YF----RN-INIDSYTMKYLLKKEGG 387 (661)
T ss_pred HHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccc---------------------cc----hh-hcCCHHHHHHHHHhcCC
Confidence 34556666653 357888999999999754433 11 11 12223344556666777
Q ss_pred CCCcCCCCCCcHHHHHHHcC-----------------------CHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHH
Q 003309 732 GQTMDDLEGCTLLHLACDSA-----------------------DIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMF 788 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g-----------------------~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~ 788 (832)
+++..+.+|.||||.|+..+ ..+++++|+.+|||+|.+|..|+||||+|+..++.++
T Consensus 388 ~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~ 467 (661)
T PHA02917 388 DAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSL 467 (661)
T ss_pred CccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHH
Confidence 77777778999999987543 3567899999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCcHHHHHHH-cCCCcHHHHHHHhhCCC
Q 003309 789 AKLLLTRGADPRAVNREGKTSLELAVE-SNFADSEVLAILSDSHG 832 (832)
Q Consensus 789 v~~Ll~~gad~~~~~~~g~TpL~~A~~-~g~~d~~iv~lLl~~gg 832 (832)
+++|+++|++++.+|..|.||||+|+. .++ .+++++|+.+|+
T Consensus 468 v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~--~~iv~~LL~~ga 510 (661)
T PHA02917 468 VSLLLESGSDVNIRSNNGYTCIAIAINESRN--IELLKMLLCHKP 510 (661)
T ss_pred HHHHHHCcCCCCCCCCCCCCHHHHHHHhCCC--HHHHHHHHHcCC
Confidence 999999999999999999999999996 666 899999998764
No 96
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=99.62 E-value=1.4e-13 Score=137.35 Aligned_cols=191 Identities=18% Similarity=0.286 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCC--------------------CCccccC
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHND--------------------PISVAFG 74 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~--------------------~~~~~~~ 74 (832)
-+..+|..++.++.|+.+|++....|.+. +.++.+...+..++.+..+.... .-.-+..
T Consensus 8 ~f~~le~k~D~t~~~~~~i~~~t~~~LQP-Npa~r~k~~~~~~~~K~~g~~K~~~~p~~~~~Lg~~M~~~G~elg~dS~~ 86 (223)
T cd07613 8 DFKEMERKVDVTSRAVMEIMTKTIEYLQP-NPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDECNF 86 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHhhccccCCCCCChHhHHHHHHHHHHhhCCCCChH
Confidence 46789999999999999999999999987 66666666666666554221100 0011235
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHH
Q 003309 75 GPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAIL 154 (832)
Q Consensus 75 ~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~ 154 (832)
|.+|.+||.+.+.|+..+..+..++...|+.||++|...||+.+...||+.+..+.+||.+..|..+. .
T Consensus 87 G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~----~------- 155 (223)
T cd07613 87 GPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKI----P------- 155 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCCC----c-------
Confidence 67899999999999999999999999999999999999999999999999999999999877665221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 003309 155 EEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQ 218 (832)
Q Consensus 155 ~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~ 218 (832)
+.++..+...|..+.=+....|..+... +.+.+..|..|+.||..||+++++++.++.+.+.+
T Consensus 156 eeElr~A~~kFees~E~a~~~M~n~l~~-e~e~~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07613 156 DEELRQALEKFDESKEIAESSMFNLLEM-DIEQVSQLSALVQAQLEYHKQATQILQQVTVKLED 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666665666566655554 56899999999999999999999999999887764
No 97
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=99.62 E-value=1.2e-13 Score=138.83 Aligned_cols=192 Identities=16% Similarity=0.218 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH------------------HHHHHHhhCCCCCCCccccCch
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAF------------------ASALETFGGGHNDPISVAFGGP 76 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f------------------~~~l~~f~~~~~~~~~~~~~~~ 76 (832)
-+..+|.+++.++.|.++|++....|++. +..+.+...+ .+++.+++...... ...|.
T Consensus 18 df~~l~~~~d~t~~~~~~i~~~t~~~LqP-Np~~r~e~~~~~k~~~~~~~~~~~~~~Lg~~M~~~g~~~g~~---S~~G~ 93 (229)
T cd07616 18 HLENLLSKAECTKHWTEKIMKQTEVLLQP-NPNARIEEFVYEKLDRKAPSRMNNPELLGQYMIDAGNEFGPG---TAYGN 93 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCC---CcHHH
Confidence 45788999999999999999999999987 6555544333 33333333333222 23568
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHH
Q 003309 77 VMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEE 156 (832)
Q Consensus 77 ~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~ 156 (832)
+|.+||++.++|+..+..++..+...|+.||++|+..||+.+...||+.+..|.+||.+..|+.+.+ .++.-...+.
T Consensus 94 aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~kAk---~~~~~~~~e~ 170 (229)
T cd07616 94 ALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLKKAK---VAEARAAAEQ 170 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cchhhcchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999976543 3343334577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003309 157 ELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (832)
Q Consensus 157 ~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~ 214 (832)
++..++..|..+.=+....|..+.. .+.+.+..|..|+.||..||+++++++.++..
T Consensus 171 elr~ae~efees~E~a~~~m~~i~~-~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~~ 227 (229)
T cd07616 171 ELRITQSEFDRQAEITRLLLEGISS-THAHHLRCLNDFVEAQMTYYAQCYQYMLDLQK 227 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999999888777776666654 36799999999999999999999999988764
No 98
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.62 E-value=1.4e-13 Score=142.79 Aligned_cols=195 Identities=30% Similarity=0.446 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHH-------HHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHH
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDI-------AFASALETFGGGHNDPISVAFGGPVMTKFTIALRE 87 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~-------~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~e 87 (832)
.+..+++++..++.++.+|.+.++.|+++......... .|+.+|.+++....+... .+.++.+|+.+..+
T Consensus 27 ~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~l~~~~~~~~~ 103 (229)
T PF03114_consen 27 EFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSS---LGNALEKFGEAMQE 103 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccch---hhhHHHHHHHHHHH
Confidence 46778889999999999999999999998777666666 889999888776544332 35789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHH
Q 003309 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQ 167 (832)
Q Consensus 88 i~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~ 167 (832)
|...+..+..++...++.||.+|+ .+++.++..++++++.+.+||.+..++.++++++..... +.++..++..|..
T Consensus 104 i~~~~~~~~~~~~~~vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~---~~~l~~a~~~f~~ 179 (229)
T PF03114_consen 104 IEEARKELESQIESTVIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSK---EEKLEEAKEEFEA 179 (229)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---HHHHHHHHHHHHH
Confidence 999999999999999999999999 889999999999999999999999999999876544322 6789999999999
Q ss_pred HHHHHHHHHHhhhhhchhhHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 003309 168 ARFSLVTALSNVEAKKRFEFL-EAVSGTMDAHLRYFKQGYELLHQMEPYIN 217 (832)
Q Consensus 168 ~sld~~~~l~~~~~~~~~e~l-~~l~~~~~a~~~ff~~g~~~~~~l~~~~~ 217 (832)
...++...|..+..... +++ ..+..|+.+|..||+++++.+.++.|.+.
T Consensus 180 ~~~~l~~~l~~l~~~~~-~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l~ 229 (229)
T PF03114_consen 180 LNEELKEELPKLFAKRQ-DILEPCLQSFIEAQLQYFQQLYQILEELQPQLA 229 (229)
T ss_dssp HHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999987765 666 99999999999999999999999998763
No 99
>PHA02730 ankyrin-like protein; Provisional
Probab=99.62 E-value=1.4e-15 Score=175.10 Aligned_cols=156 Identities=13% Similarity=0.096 Sum_probs=123.8
Q ss_pred eeehhhhcCc--hhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCc--cccccccccC
Q 003309 653 QIWEGVRTND--KKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDR--SSSGSLNLAG 728 (832)
Q Consensus 653 ~L~~Av~~~d--~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~--~~~~~lll~~ 728 (832)
-|+.-+..++ ...++++|+++|||||.. . .|.||++.++...+. ...+..+|+.
T Consensus 346 ~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~---------------------~G~TpLH~Aa~~nnn~i~~eIvelLIs 403 (672)
T PHA02730 346 MLINYLHYGDMVSIPILRCMLDNGATMDKT-T---------------------DNNYPLHDYFVNNNNIVDVNVVRFIVE 403 (672)
T ss_pred HHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-C---------------------CCCcHHHHHHHHcCCcchHHHHHHHHH
Confidence 4455566564 467889999999999963 2 246778777666542 2344444555
Q ss_pred CCC--CCCcCCCCCCcHHHH---HHHcC---------CHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 003309 729 TSE--GQTMDDLEGCTLLHL---ACDSA---------DIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 794 (832)
Q Consensus 729 ~~~--~~~~~d~~g~TpLh~---Aa~~g---------~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~ 794 (832)
.|+ +++..|..|.||||. |...+ ..+++++|+.+||++|++|..|.||||+|+..++.+++++|++
T Consensus 404 ~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~ 483 (672)
T PHA02730 404 NNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLE 483 (672)
T ss_pred cCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 554 789999999999994 33232 2357999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC-CCCcHHHHHHHc--CCCcHHHHHHHhhCCC
Q 003309 795 RGADPRAVNR-EGKTSLELAVES--NFADSEVLAILSDSHG 832 (832)
Q Consensus 795 ~gad~~~~~~-~g~TpL~~A~~~--g~~d~~iv~lLl~~gg 832 (832)
+||+++.+|. .|.||||+|+.. ++ .+++++|+++|+
T Consensus 484 ~GAdIN~~d~~~g~TaL~~Aa~~~~~~--~eIv~~LLs~ga 522 (672)
T PHA02730 484 YGASVNTTSRSIINTAIQKSSYRRENK--TKLVDLLLSYHP 522 (672)
T ss_pred CCCCCCCCCCcCCcCHHHHHHHhhcCc--HHHHHHHHHcCC
Confidence 9999999997 599999999875 56 899999999874
No 100
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.61 E-value=1.1e-15 Score=151.80 Aligned_cols=114 Identities=29% Similarity=0.374 Sum_probs=101.7
Q ss_pred CccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 003309 717 DRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 796 (832)
Q Consensus 717 ~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 796 (832)
+....+.+.|-....+.|..|..|.+|||+||..|+..+|++||.+|+.||..+....||||+|+..||.++|..||++.
T Consensus 11 gna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~k 90 (448)
T KOG0195|consen 11 GNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRK 90 (448)
T ss_pred CCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHh
Confidence 33344455566777789999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 797 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 797 ad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+|+|+.|..|.||||+||-.|. ..|.+=|+..|+
T Consensus 91 advnavnehgntplhyacfwgy--dqiaedli~~ga 124 (448)
T KOG0195|consen 91 ADVNAVNEHGNTPLHYACFWGY--DQIAEDLISCGA 124 (448)
T ss_pred cccchhhccCCCchhhhhhhcH--HHHHHHHHhccc
Confidence 9999999999999999999998 788888888775
No 101
>PHA02795 ankyrin-like protein; Provisional
Probab=99.61 E-value=2.3e-15 Score=165.61 Aligned_cols=153 Identities=10% Similarity=-0.031 Sum_probs=123.2
Q ss_pred CchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCCCCCcCCCCC
Q 003309 661 NDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEG 740 (832)
Q Consensus 661 ~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g 740 (832)
.+..+++++|+.+|+++|.... ++ ..+....++++.++....+......+|+..|++++.. ++
T Consensus 87 ~~~k~~~~~l~s~~~~~~~~~~-------------~~--~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~ 149 (437)
T PHA02795 87 ITYKDIISALVSKNYMEDIFSI-------------II--KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--EC 149 (437)
T ss_pred cchHHHHHHHHhcccccchhhh-------------hh--hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CC
Confidence 3445566666677777662110 00 1223356778888876778888888899999999885 46
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCC-cc-----CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 003309 741 CTLLHLACDSADIGMLELLLQYGANIN-AT-----DSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV 814 (832)
Q Consensus 741 ~TpLh~Aa~~g~~~~v~~Ll~~gadvn-~~-----d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~ 814 (832)
.||||.|+..|+.+++++|+.+|++.+ .. +..|.||+|.|+..++.+++++|+++||+++.+|..|.||||+|+
T Consensus 150 ~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa 229 (437)
T PHA02795 150 LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAI 229 (437)
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHH
Confidence 899999999999999999999998543 22 134789999999999999999999999999999999999999999
Q ss_pred HcCCCcHHHHHHHhhCCC
Q 003309 815 ESNFADSEVLAILSDSHG 832 (832)
Q Consensus 815 ~~g~~d~~iv~lLl~~gg 832 (832)
..|+ .+++++|+++|+
T Consensus 230 ~~g~--~eiVelLL~~GA 245 (437)
T PHA02795 230 YAGY--IDLVSWLLENGA 245 (437)
T ss_pred HcCC--HHHHHHHHHCCC
Confidence 9999 999999999885
No 102
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=99.61 E-value=1.6e-13 Score=136.25 Aligned_cols=183 Identities=12% Similarity=0.184 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHH------------------HHHHHHHhhCCCCCCCccccCch
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIA------------------FASALETFGGGHNDPISVAFGGP 76 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~------------------f~~~l~~f~~~~~~~~~~~~~~~ 76 (832)
-+..+|.+++.++.|+++|++....|++. +..+.+... +.+++..++...... ...|.
T Consensus 18 df~~l~~~~D~tk~~~~~i~~~t~~~LqP-Np~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g~~---s~~G~ 93 (220)
T cd07617 18 HFENLLARADSTKNWTEKILRQTEVLLQP-NPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTEAANDFGPG---TPYGK 93 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCC---CchHH
Confidence 46788999999999999999999999987 655555333 333333333333222 23578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHH
Q 003309 77 VMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEE 156 (832)
Q Consensus 77 ~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~ 156 (832)
+|.+||.+.++|+..+..+...+...|+.||++|+..||+.+...||+.+..|.+||.+..|..+. +.
T Consensus 94 aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~ka------------e~ 161 (220)
T cd07617 94 TLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKA------------EH 161 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------HH
Confidence 999999999999999999999999999999999999999999999999999999999998885331 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003309 157 ELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (832)
Q Consensus 157 ~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~ 214 (832)
++..+...|..+.=.+...|..+... +.+.|..|..|+.||..||++++++|.++.+
T Consensus 162 elr~A~~kf~~~~E~a~~~M~~il~~-~~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~ 218 (220)
T cd07617 162 ELRVAQTEFDRQAEVTRLLLEGISST-HVNHLRCLHEFVEAQATYYAQCYRHMLDLQK 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666666543333334444433 5689999999999999999999999998865
No 103
>PHA02798 ankyrin-like protein; Provisional
Probab=99.61 E-value=1.7e-15 Score=175.35 Aligned_cols=145 Identities=18% Similarity=0.184 Sum_probs=118.7
Q ss_pred hhhHHHHHhhhhccc-----cCCCCcccccccc---cCccccccccccCCCCCCCcCCCCCCcHHHHHHHcC---CHHHH
Q 003309 688 SSLTLAKAMLLNEQT-----SLERSSSSLTGNS---SDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSA---DIGML 756 (832)
Q Consensus 688 ~~l~~~~~ll~~~~~-----~~~~~~~~l~~~~---~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g---~~~~v 756 (832)
....+++.|+..+.+ ..|.||++.++.. ..+......+|+..|+++|..|..|.||||+|+..+ +.+++
T Consensus 49 ~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv 128 (489)
T PHA02798 49 PSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEIL 128 (489)
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHH
Confidence 355777777764443 3566777765432 123355666788899999999999999999999875 68999
Q ss_pred HHHHHcCCCCCccCCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcC--CCcHHHHHHHhhC
Q 003309 757 ELLLQYGANINATDSRGLTPLHRCILRGK---AMFAKLLLTRGADPRAVN-REGKTSLELAVESN--FADSEVLAILSDS 830 (832)
Q Consensus 757 ~~Ll~~gadvn~~d~~g~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~~-~~g~TpL~~A~~~g--~~d~~iv~lLl~~ 830 (832)
++|+++||+++..|..|.||||+|+..|+ .+++++|+++|++++..+ ..|.||||.++..+ ..+.+++++|+++
T Consensus 129 ~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~ 208 (489)
T PHA02798 129 LFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDN 208 (489)
T ss_pred HHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHC
Confidence 99999999999999999999999999988 999999999999999885 57899999998864 3578999999998
Q ss_pred CC
Q 003309 831 HG 832 (832)
Q Consensus 831 gg 832 (832)
|+
T Consensus 209 Ga 210 (489)
T PHA02798 209 GF 210 (489)
T ss_pred CC
Confidence 85
No 104
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.60 E-value=6.2e-16 Score=167.15 Aligned_cols=155 Identities=24% Similarity=0.244 Sum_probs=130.9
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
-.++.|+..+|...|..+| ..|+++|..+.++ -|.+| -++......++.+|+..|+
T Consensus 42 a~~l~A~~~~d~~ev~~ll-~~ga~~~~~n~Dg---------------------lTalh--q~~id~~~e~v~~l~e~ga 97 (527)
T KOG0505|consen 42 AVFLEACSRGDLEEVRKLL-NRGASPNLCNVDG---------------------LTALH--QACIDDNLEMVKFLVENGA 97 (527)
T ss_pred HHHHhccccccHHHHHHHh-ccCCCccccCCcc---------------------chhHH--HHHhcccHHHHHHHHHhcC
Confidence 4578899999999998887 7889888877665 23333 3333444456677889999
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC-----------------------------------------
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD----------------------------------------- 770 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d----------------------------------------- 770 (832)
++|..|..|+||||.|+..|++.++++|+.+||++-+.+
T Consensus 98 ~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~m 177 (527)
T KOG0505|consen 98 NVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTM 177 (527)
T ss_pred CccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHH
Confidence 999999999999999999999999999999988743322
Q ss_pred ------------------CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 771 ------------------SRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 771 ------------------~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
..|.|.||+|+..|..++.++|+.+|.+++++|.+|+||||.|+..|+ .+++++|+++||
T Consensus 178 l~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~--~~~~elL~~~ga 255 (527)
T KOG0505|consen 178 LDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQ--EDACELLVEHGA 255 (527)
T ss_pred HHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhh--HhHHHHHHHhhc
Confidence 347788999999999999999999999999999999999999999999 899999999885
No 105
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=99.60 E-value=3e-13 Score=135.53 Aligned_cols=187 Identities=18% Similarity=0.285 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH-----------------------HHhhCCCCCCCcc
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASAL-----------------------ETFGGGHNDPISV 71 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l-----------------------~~f~~~~~~~~~~ 71 (832)
.+..+|..++.++.|+.+|++....|.+. +..+.+...+...+ .+.|....+..
T Consensus 8 ~f~~le~~~d~t~~~~~~l~~~t~~~LqP-Np~~R~~~~~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS-- 84 (223)
T cd07614 8 DFKEMEKKVDLTSKAVTEVLARTIEYLQP-NPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKELGDES-- 84 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CchHhHHHHHHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhCCCCC--
Confidence 46789999999999999999999999996 55554444444444 44444333322
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHH
Q 003309 72 AFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVA 151 (832)
Q Consensus 72 ~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~ 151 (832)
..|.+|.+||++.+.|+..+..+...+...|+.||++|++.||+.+...||+.+..+.+||.+..|+ .|. +
T Consensus 85 -~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~---~k~--~--- 155 (223)
T cd07614 85 -NFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLDFDYKKKRQ---GKI--P--- 155 (223)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCC--c---
Confidence 3567899999999999999999999999999999999999999999999999999999999877764 221 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 003309 152 AILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYIN 217 (832)
Q Consensus 152 ~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~ 217 (832)
+.+|..+...|..+.=+....|..+... +.+.++.|..|+.||..||++++++|.++.+.+.
T Consensus 156 ---eeelr~a~ekFees~E~a~~~M~~il~~-e~e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07614 156 ---DEELRQAMEKFEESKEVAETSMHNLLET-DIEQVSQLSALVDAQLDYHRQAVQILDELAEKLK 217 (223)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456666667777777777777777666 5699999999999999999999999988766554
No 106
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=99.60 E-value=2.8e-13 Score=139.29 Aligned_cols=202 Identities=18% Similarity=0.236 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh--------HHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHH
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDG--------DIAFASALETFGGGHNDPISVAFGGPVMTKFTIALR 86 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~--------~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ 86 (832)
-+..+|.+++.++.|+.+++|....+.+. +..... ...+..++.+.+....+.. ..+.+|.+||.+.+
T Consensus 16 ~~~~lE~~~d~~k~~~~~~~k~~~~~lq~-n~~~~~ekr~rk~p~~~Lg~~M~~~g~~l~~~s---~lg~~L~~~g~a~~ 91 (244)
T cd07595 16 ELLQIEKRVEAVKDACQNIHKKLISCLQG-QSGEDKDKRLKKLPEYGLAQSMLESSKELPDDS---LLGKVLKLCGEAQN 91 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCC-CcHHHHhhhhccCcHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHH
Confidence 35669999999999999999965555543 332222 2345555555555443222 24679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCc----hhHHhHHHHHHHHHH
Q 003309 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTK----TDVAAILEEELHSAR 162 (832)
Q Consensus 87 ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~----~~~~~e~~~~l~~~r 162 (832)
.|+..+..+...+...|+.||++|+..+|+.+...||+.++.+.+||++..|+.+..|... +.+......++..+.
T Consensus 92 ~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae 171 (244)
T cd07595 92 TLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAE 171 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccccccccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987754321 223334456777777
Q ss_pred HHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003309 163 SAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLT 221 (832)
Q Consensus 163 ~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~ 221 (832)
..|.++.-+++..|..+-.+ +.+++..|..|+.+|..||++++++++++.|.++....
T Consensus 172 ~k~e~~~e~~~~~M~~~l~~-E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~ 229 (244)
T cd07595 172 LKLEQCRDALATDMYEFLAK-EAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQIE 229 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877666 67999999999999999999999999998888876554
No 107
>PHA02730 ankyrin-like protein; Provisional
Probab=99.59 E-value=5.7e-15 Score=170.02 Aligned_cols=112 Identities=14% Similarity=0.069 Sum_probs=97.1
Q ss_pred ccccccccccCCCCCCCcCCCCCCcHHHHHHHcCC----HHHHHHHHHcCC--CCCccCCCCCcHHHH---HHHcC----
Q 003309 718 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD----IGMLELLLQYGA--NINATDSRGLTPLHR---CILRG---- 784 (832)
Q Consensus 718 ~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~----~~~v~~Ll~~ga--dvn~~d~~g~TpLh~---A~~~g---- 784 (832)
....+..+|+..|++++.. ..|.||||+|+..++ .+++++|+.+|+ ++|.+|..|.||||. |...+
T Consensus 357 v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~ 435 (672)
T PHA02730 357 VSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYH 435 (672)
T ss_pred CcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhcccccc
Confidence 4455667888899999985 799999999998875 899999999998 699999999999994 33332
Q ss_pred -----CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 785 -----KAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 785 -----~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
..+++++|+.+|++++.+|..|.||||+|+..++ .+++++|+++|+
T Consensus 436 ~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~--~eive~LI~~GA 486 (672)
T PHA02730 436 CYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNN--IQFARRLLEYGA 486 (672)
T ss_pred ccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCC--HHHHHHHHHCCC
Confidence 2357999999999999999999999999999998 999999999886
No 108
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.59 E-value=3.2e-15 Score=146.87 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=113.5
Q ss_pred ceeehhhhcCchhhhH---hhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCcccc-cccccc
Q 003309 652 HQIWEGVRTNDKKAVY---RHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSS-GSLNLA 727 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~---~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~-~~lll~ 727 (832)
..|+.|++.++...+. ++|.+.|+++|..+..+ .+++++++..+....+ ...+|+
T Consensus 22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g---------------------~t~Lh~Aa~~g~~~~~~~i~~Ll 80 (166)
T PHA02743 22 NTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHG---------------------RQCTHMVAWYDRANAVMKIELLV 80 (166)
T ss_pred cHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCC---------------------CcHHHHHHHhCccCHHHHHHHHH
Confidence 4688899999986444 45668888888755443 6788888776654432 245677
Q ss_pred CCCCCCCcCC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q 003309 728 GTSEGQTMDD-LEGCTLLHLACDSADIGMLELLLQ-YGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNRE 805 (832)
Q Consensus 728 ~~~~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~-~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~ 805 (832)
..|++++.+| ..|.||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+..++.+++++|+.+|++++.++..
T Consensus 81 ~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~ 160 (166)
T PHA02743 81 NMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSI 160 (166)
T ss_pred HcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccC
Confidence 8899999998 589999999999999999999995 79999999999999999999999999999999999999999887
Q ss_pred CC
Q 003309 806 GK 807 (832)
Q Consensus 806 g~ 807 (832)
|.
T Consensus 161 ~~ 162 (166)
T PHA02743 161 GL 162 (166)
T ss_pred Cc
Confidence 75
No 109
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.59 E-value=5.3e-13 Score=135.25 Aligned_cols=195 Identities=17% Similarity=0.264 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhH--------HHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHH
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGD--------IAFASALETFGGGHNDPISVAFGGPVMTKFTIALR 86 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~--------~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ 86 (832)
-+..+|.+++..+.|+.++.|....|.+. +..+.+. ..+.+++.+++....+.. .+|.+|.++|.+.+
T Consensus 16 ~~~~le~r~D~~k~~~~~i~kk~~~~LQp-np~~r~ekr~~k~P~~~L~q~M~~~g~elg~~s---~lg~aL~~~gea~~ 91 (248)
T cd07619 16 DLLQVEKRLELVKQVSHSTHKKLTACLQG-QQGVDADKRSKKLPLTTLAQCMVEGAAVLGDDS---LLGKMLKLCGETED 91 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHhccCCCHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHH
Confidence 46789999999999999999999999986 4344332 357778877777554332 35689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCC-----------chhHHh---
Q 003309 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT-----------KTDVAA--- 152 (832)
Q Consensus 87 ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k-----------~~~~~~--- 152 (832)
.|+..+..+..++...|+.||++|+.+||+.+...||++++.+.+||++..|+.+.+++. +.+.++
T Consensus 92 kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~e~ 171 (248)
T cd07619 92 KLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALREEM 171 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCCccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997765421 223333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003309 153 -ILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLT 221 (832)
Q Consensus 153 -e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~ 221 (832)
+++..+..+|-.+...++.++. +..++++++..|+.+|..|+++++++++++.|.|+....
T Consensus 172 E~ae~~~e~~kd~~~~~m~~~l~--------~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~ 233 (248)
T cd07619 172 EEAANRMEICRDQLSADMYSFVA--------KEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQE 233 (248)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777777776 677999999999999999999999999999999988764
No 110
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=99.59 E-value=4.6e-13 Score=135.21 Aligned_cols=187 Identities=20% Similarity=0.303 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhH-----------------------HHHHHHHHHhhCCCCCCCcc
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGD-----------------------IAFASALETFGGGHNDPISV 71 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~-----------------------~~f~~~l~~f~~~~~~~~~~ 71 (832)
-+..+|.+++..+.|+++|.+....|++. +..+.+. ..+.+++.+.+....+..
T Consensus 8 df~~le~~~d~~~~~~~~l~~~~~~~lqp-NP~~r~~~~~~~~~~K~~g~~~~~~~p~~~~~Lg~~M~~~g~elg~~S-- 84 (223)
T cd07592 8 EFLEMERKTDATSKLVEDLIPKTKEYLQP-NPAARAKLAMQNTYSKIRGQAKSTKYPQPEGLLGEVMLKYGRELGEDS-- 84 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CchHhHHHHHHHHHHHHhccCcccCCCCcccHHHHHHHHHHhhcCCCC--
Confidence 45789999999999999999999999964 4333332 344444444444332222
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHH
Q 003309 72 AFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVA 151 (832)
Q Consensus 72 ~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~ 151 (832)
..|.+|.+||.+..+|+..+..+...+...|+.||+.|+..||+.+...||+.+..+.+||.+..|+. |.
T Consensus 85 -~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdyD~~k~k~~---k~------ 154 (223)
T cd07592 85 -NFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDYDYKKRKQG---KG------ 154 (223)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC------
Confidence 35678999999999999999999999999999999999999999999999999999999998887752 21
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 003309 152 AILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYIN 217 (832)
Q Consensus 152 ~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~ 217 (832)
.+.++..+...|..+.=+....|..+... +.+.+..|..|+.||..||+++++.+.++.+.+.
T Consensus 155 --~eeEl~~Ae~kfe~s~E~a~~~M~~il~~-e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~ 217 (223)
T cd07592 155 --PDEELKQAEEKFEESKELAENSMFNLLEN-DVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQ 217 (223)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24567777777877777777777777663 5699999999999999999999999988877665
No 111
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.57 E-value=7.1e-15 Score=128.87 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=62.6
Q ss_pred EEEEecCCC---CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccc
Q 003309 297 GYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (832)
Q Consensus 297 G~L~K~~~~---~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (832)
|.|.||+.. ..++||||||+|+ +..|+||+.+...+.|+
T Consensus 5 ~~~~kr~~~~~~~~~n~KkRwF~Lt-~~~L~Y~k~~~~~~~g~------------------------------------- 46 (98)
T cd01244 5 LQQVDRSRLAWKKVLHFKKRYFQLT-TTHLSWAKDVQCKKSAL------------------------------------- 46 (98)
T ss_pred cEEEEcccCCCccCcCCceeEEEEC-CCEEEEECCCCCceeee-------------------------------------
Confidence 456666522 3468999999999 67888887765544443
Q ss_pred ccccccccc--ccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHH
Q 003309 374 RHTVNLLTS--TIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 374 ~~~i~l~~~--~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~ 425 (832)
|+|... ..........+.|+|+|++|+|+|+|||+|++|+++||.||+.
T Consensus 47 ---I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 47 ---IKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred ---EEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCCHHHHHHHHHHHhc
Confidence 333222 1111222234568999999999999999999999999999975
No 112
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.57 E-value=9.4e-15 Score=130.56 Aligned_cols=95 Identities=21% Similarity=0.394 Sum_probs=62.4
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEec-CCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRK-QCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
++|+|||.|+++ ..+.|++|||+|++++.|+||++ +.+...+.
T Consensus 1 v~k~G~L~K~g~-~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~----------------------------------- 44 (102)
T cd01241 1 VVKEGWLHKRGE-YIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFL----------------------------------- 44 (102)
T ss_pred CcEEEEEEeecC-CCCCCeeEEEEEeCCCeEEEEecCCCccCccc-----------------------------------
Confidence 368999999955 56799999999996676555544 33221111
Q ss_pred cccccccccccccccCCcccCCcceEEEe------cCCceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIKVDADQSDLRFCFRII------SPTKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~~~~r~~~F~I~------t~~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
.+...+.+..|.+.. .+ ..++++|.|. ++.| +|+|+|++||++||.||+.++
T Consensus 45 i~l~~~~v~~~~~~~-~~-~~~~~~F~i~~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v~ 102 (102)
T cd01241 45 PPLNNFSVAECQLMK-TE-RPRPNTFIIRCLQWTTVIER--TFHVESPEEREEWIHAIQTVA 102 (102)
T ss_pred cccCCeEEeeeeeee-cc-CCCcceEEEEeccCCcccCE--EEEeCCHHHHHHHHHHHHhhC
Confidence 111223444455532 22 3567899997 2345 457999999999999998763
No 113
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=99.57 E-value=9.6e-13 Score=133.91 Aligned_cols=195 Identities=15% Similarity=0.207 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh--------HHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHH
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDG--------DIAFASALETFGGGHNDPISVAFGGPVMTKFTIALR 86 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~--------~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ 86 (832)
-+..+|.+++..+.|+.++.|....|.+. +..+.+ ...+.+++.+.+....... ..|.+|..+|.+.+
T Consensus 16 ~~~~le~r~D~~k~~~~~i~k~~~~~lqp-np~~r~ek~~kk~p~~~Lgq~M~e~~~~lg~~s---~~g~aL~~~gea~~ 91 (246)
T cd07618 16 DLLQIERRLDTVRSVSHNVHKRLIACFQG-QVGTDAEKRHKKLPLTALAQNMQEGSAQLGEES---LIGKMLDTCGDAEN 91 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHhccCCHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHH
Confidence 46779999999999999999999988765 322222 3566777777776554432 35679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCC---------c----hhHHhH
Q 003309 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT---------K----TDVAAI 153 (832)
Q Consensus 87 ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k---------~----~~~~~e 153 (832)
.|+..+..+...+...|+.||++|+.+||+.+...||++++.+.+||.+..|+.+..++. + .+.+.+
T Consensus 92 kla~~~~~~d~~ie~~fl~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~e~ 171 (246)
T cd07618 92 KLAFELSQHEVLLEKDILDPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKIDMLKEEMDE 171 (246)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHHHHHhccccCccccccccchhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997665311 1 112345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003309 154 LEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLT 221 (832)
Q Consensus 154 ~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~ 221 (832)
+..++..+|-.|...++.++ -++.+++..+..||.+|..||++++++++++.|.|+.+..
T Consensus 172 a~~k~E~~kD~~~~dm~~~l--------~~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~~~ 231 (246)
T cd07618 172 AGNKVEQCKDQLAADMYNFA--------SKEGEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQD 231 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667766666665554 3688999999999999999999999999999998888763
No 114
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.57 E-value=9.3e-15 Score=128.36 Aligned_cols=90 Identities=30% Similarity=0.557 Sum_probs=68.9
Q ss_pred EEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccccc
Q 003309 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 374 (832)
Q Consensus 295 k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (832)
++|||+|+++ ..+.|+||||+|. ++.|+||+.+.... ..+.
T Consensus 1 ~~G~L~k~~~-~~~~W~~r~~vl~-~~~L~~~~~~~~~~-------------------------------------~~~~ 41 (91)
T cd01246 1 VEGWLLKWTN-YLKGWQKRWFVLD-NGLLSYYKNKSSMR-------------------------------------GKPR 41 (91)
T ss_pred CeEEEEEecc-cCCCceeeEEEEE-CCEEEEEecCccCC-------------------------------------CCce
Confidence 4899999965 4478999999999 77888887764310 1223
Q ss_pred ccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHH
Q 003309 375 HTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 375 ~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
+.|.|..+++... ..++++|.|.+++ ++|+|+|+|++|+.+||.||+.|
T Consensus 42 ~~i~l~~~~~~~~---~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 42 GTILLSGAVISED---DSDDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred EEEEeceEEEEEC---CCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence 4566666665432 2347999999998 99999999999999999999864
No 115
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.56 E-value=1.8e-14 Score=126.01 Aligned_cols=83 Identities=35% Similarity=0.557 Sum_probs=78.1
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHH
Q 003309 744 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEV 823 (832)
Q Consensus 744 Lh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~i 823 (832)
||+||..|+++++++|++.+.+++. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~ 74 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGN--LEI 74 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTH--HHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCC--HHH
Confidence 7999999999999999999998887 8999999999999999999999999999999999999999999998 999
Q ss_pred HHHHhhCCC
Q 003309 824 LAILSDSHG 832 (832)
Q Consensus 824 v~lLl~~gg 832 (832)
+++|+++|.
T Consensus 75 ~~~Ll~~g~ 83 (89)
T PF12796_consen 75 VKLLLEHGA 83 (89)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHcCC
Confidence 999999874
No 116
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.55 E-value=2.1e-15 Score=144.79 Aligned_cols=101 Identities=27% Similarity=0.264 Sum_probs=71.3
Q ss_pred CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q 003309 730 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS 809 (832)
Q Consensus 730 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~Tp 809 (832)
..-+|..|..|.|||++|+.+|++++|++||..|||++.......++|.+|+..|..++|++||.++.|+|..|.+|.||
T Consensus 150 ~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTp 229 (296)
T KOG0502|consen 150 NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTP 229 (296)
T ss_pred hccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCce
Confidence 34456667777777777777777777777777777777666666677777777777777777777777777777777777
Q ss_pred HHHHHHcCCCcHHHHHHHhhCCC
Q 003309 810 LELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 810 L~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|-+|++.|| .++|+.|+..|+
T Consensus 230 LlyAvrgnh--vkcve~Ll~sGA 250 (296)
T KOG0502|consen 230 LLYAVRGNH--VKCVESLLNSGA 250 (296)
T ss_pred eeeeecCCh--HHHHHHHHhcCC
Confidence 777777776 667777776664
No 117
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.55 E-value=1.7e-14 Score=119.81 Aligned_cols=103 Identities=33% Similarity=0.515 Sum_probs=92.3
Q ss_pred eeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCCC
Q 003309 653 QIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEG 732 (832)
Q Consensus 653 ~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~ 732 (832)
.+.+++++|+..+|.+.+ ..|.|||-..
T Consensus 5 ~~~W~vkNG~~DeVk~~v-~~g~nVn~~~--------------------------------------------------- 32 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSV-NEGLNVNEIY--------------------------------------------------- 32 (117)
T ss_pred hHhhhhccCcHHHHHHHH-HccccHHHHh---------------------------------------------------
Confidence 466799999999999988 4578887532
Q ss_pred CCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 003309 733 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLEL 812 (832)
Q Consensus 733 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~ 812 (832)
.|++|||+||-.|..+++++|+..||+++.+|..|-|||..|+..||.+||++||..||+-..+..+|.+.+..
T Consensus 33 ------ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~ea 106 (117)
T KOG4214|consen 33 ------GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEA 106 (117)
T ss_pred ------CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhh
Confidence 48999999999999999999999999999999999999999999999999999999999999998898777654
Q ss_pred H
Q 003309 813 A 813 (832)
Q Consensus 813 A 813 (832)
+
T Consensus 107 t 107 (117)
T KOG4214|consen 107 T 107 (117)
T ss_pred c
Confidence 3
No 118
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.53 E-value=1.6e-14 Score=172.49 Aligned_cols=176 Identities=22% Similarity=0.310 Sum_probs=139.5
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhh--------HHHHHhhh-----hccccCCCCcccccccccCc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL--------TLAKAMLL-----NEQTSLERSSSSLTGNSSDR 718 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l--------~~~~~ll~-----~~~~~~~~~~~~l~~~~~~~ 718 (832)
..||.+...++..- +++++..|+++|..+..+-...+. ..+..++. +.....|.|++++++..++.
T Consensus 409 Tplh~aa~~~~~~~-v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~ 487 (1143)
T KOG4177|consen 409 TPLHVAAHYGNPRV-VKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHT 487 (1143)
T ss_pred ceeeehhhccCcce-EEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCc
Confidence 45676776666654 455567888888866655222222 22222222 33334667888877776666
Q ss_pred cccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 003309 719 SSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 798 (832)
Q Consensus 719 ~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 798 (832)
..+ .+++..++..+.....|.|+||.|...+...+++.++++|++++.++..|.||||.|+.+|+..+|++||++|+|
T Consensus 488 ~~~--~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd 565 (1143)
T KOG4177|consen 488 EVV--QLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD 565 (1143)
T ss_pred hHH--HHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcc
Confidence 553 455666678888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 799 PRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 799 ~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
++.++..|+||||.|+..|+ .+|+.+|+++||
T Consensus 566 v~ak~~~G~TPLH~Aa~~G~--~~i~~LLlk~GA 597 (1143)
T KOG4177|consen 566 VNAKDKLGYTPLHQAAQQGH--NDIAELLLKHGA 597 (1143)
T ss_pred ccccCCCCCChhhHHHHcCh--HHHHHHHHHcCC
Confidence 99999999999999999999 999999999986
No 119
>PHA02741 hypothetical protein; Provisional
Probab=99.53 E-value=4.4e-14 Score=139.34 Aligned_cols=96 Identities=25% Similarity=0.277 Sum_probs=87.4
Q ss_pred CCcCCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCCC
Q 003309 733 QTMDDLEGCTLLHLACDSADIGMLELLLQ------YGANINATDSRGLTPLHRCILRGK----AMFAKLLLTRGADPRAV 802 (832)
Q Consensus 733 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~------~gadvn~~d~~g~TpLh~A~~~g~----~~~v~~Ll~~gad~~~~ 802 (832)
++.+|..|.||||+||..|+.+++++|+. .|++++.+|..|+||||+|+..|+ .+++++|+.+|++++.+
T Consensus 14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~ 93 (169)
T PHA02741 14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ 93 (169)
T ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence 34567889999999999999999999854 368999999999999999999999 58999999999999999
Q ss_pred CC-CCCcHHHHHHHcCCCcHHHHHHHhhC
Q 003309 803 NR-EGKTSLELAVESNFADSEVLAILSDS 830 (832)
Q Consensus 803 ~~-~g~TpL~~A~~~g~~d~~iv~lLl~~ 830 (832)
+. .|.||||+|+..++ .+++++|++.
T Consensus 94 ~~~~g~TpLh~A~~~~~--~~iv~~Ll~~ 120 (169)
T PHA02741 94 EMLEGDTALHLAAHRRD--HDLAEWLCCQ 120 (169)
T ss_pred CcCCCCCHHHHHHHcCC--HHHHHHHHhC
Confidence 85 89999999999998 9999999973
No 120
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.52 E-value=1.6e-14 Score=175.64 Aligned_cols=166 Identities=22% Similarity=0.234 Sum_probs=122.8
Q ss_pred cceeehhhhcCchhhhHhhhhcc--ccccccccchhhh--------hhhhHHHHHhhhhcc-ccCCCCcccccccccCcc
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNF--EVDVNAVYEQVSC--------ISSLTLAKAMLLNEQ-TSLERSSSSLTGNSSDRS 719 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~--gadvN~~~~~~~~--------~~~l~~~~~ll~~~~-~~~~~~~~~l~~~~~~~~ 719 (832)
.+.++.|++.||...|.++| +. ++|+|..+..+.. +.+..+++.|+.... +..|.|+++.++......
T Consensus 18 ~~~~l~A~~~g~~~~v~~lL-~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~ 96 (743)
T TIGR00870 18 EKAFLPAAERGDLASVYRDL-EEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDA 96 (743)
T ss_pred HHHHHHHHHcCCHHHHHHHh-ccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHH
Confidence 46788899999999888777 55 7888876665422 334456666655443 556777887765422222
Q ss_pred cc-ccccccCCCCC------C----CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC--------------CCCC
Q 003309 720 SS-GSLNLAGTSEG------Q----TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD--------------SRGL 774 (832)
Q Consensus 720 ~~-~~lll~~~~~~------~----~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d--------------~~g~ 774 (832)
.. ...++...+.. + ...+..|.||||+||..|+.++|++|+++||+++..+ ..|.
T Consensus 97 v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~ 176 (743)
T TIGR00870 97 VEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGE 176 (743)
T ss_pred HHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccc
Confidence 11 11122222211 1 1123569999999999999999999999999999753 2589
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 003309 775 TPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 817 (832)
Q Consensus 775 TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g 817 (832)
||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..+
T Consensus 177 tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~ 219 (743)
T TIGR00870 177 SPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN 219 (743)
T ss_pred cHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999886
No 121
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.51 E-value=1.1e-13 Score=124.11 Aligned_cols=97 Identities=33% Similarity=0.659 Sum_probs=73.6
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccc
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (832)
++++|||.|++ ...+.|++|||+|. ++.|+||+++... ....
T Consensus 1 ~~~~G~L~~~~-~~~~~wk~r~~vL~-~~~L~~~~~~~~~------------------------------------~~~~ 42 (104)
T PF00169_consen 1 CIKEGWLLKKS-SSRKKWKKRYFVLR-DSYLLYYKSSKDK------------------------------------SDSK 42 (104)
T ss_dssp EEEEEEEEEEE-SSSSSEEEEEEEEE-TTEEEEESSTTTT------------------------------------TESS
T ss_pred CEEEEEEEEEC-CCCCCeEEEEEEEE-CCEEEEEecCccc------------------------------------ccee
Confidence 36899999996 45678999999999 5667777765420 0112
Q ss_pred ccccccccccccccCCcc-----cCCcceEEEecCCc-eEEEEeCCHHHHHHHHHHHHHHH
Q 003309 373 ARHTVNLLTSTIKVDADQ-----SDLRFCFRIISPTK-NYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 373 ~~~~i~l~~~~v~~~~~~-----~~r~~~F~I~t~~r-t~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
+...|++..+.|...... ..+++||+|.++.+ +|+|+|+|++|+..||.+|+.++
T Consensus 43 ~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 43 PKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp ESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 334566766666543333 46789999999986 99999999999999999999886
No 122
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.51 E-value=9.1e-14 Score=123.97 Aligned_cols=98 Identities=19% Similarity=0.307 Sum_probs=71.9
Q ss_pred eEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccc
Q 003309 294 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (832)
Q Consensus 294 ~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (832)
+|+|||.|.+.. .+.|+.|||+|-++ +|.|++.... .. ......
T Consensus 3 ikeG~L~K~~~~-~~~~k~RyffLFnd-~Ll~~~~~~~---~~-------------------------------~~~y~~ 46 (101)
T cd01219 3 LKEGSVLKISST-TEKTEERYLFLFND-LLLYCVPRKM---IG-------------------------------GSKFKV 46 (101)
T ss_pred ccceEEEEEecC-CCCceeEEEEEeCC-EEEEEEcccc---cC-------------------------------CCcEEE
Confidence 689999999654 45799999999977 4444443210 00 111223
Q ss_pred cccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 374 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 374 ~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
...|++..+.|.. .++.+.+++|.|.+++|+|+|+|+|++|+++||.||+.+|.
T Consensus 47 ~~~i~l~~~~v~~-~~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 47 RARIDVSGMQVCE-GDNLERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEEecccEEEEe-CCCCCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 4556776666653 33456789999999999999999999999999999999985
No 123
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.51 E-value=1.7e-14 Score=148.25 Aligned_cols=128 Identities=25% Similarity=0.274 Sum_probs=107.6
Q ss_pred hccccCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCCCCccCC-C
Q 003309 699 NEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDS-----ADIGMLELLLQYGANINATDS-R 772 (832)
Q Consensus 699 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~-----g~~~~v~~Ll~~gadvn~~d~-~ 772 (832)
+-.+.+|.|.+|+++...+-.. +.+||-..-.+++.++.-|.||+++|+.. .+..+|+.|... .|||++-. .
T Consensus 262 NlaDsNGNTALHYsVSHaNF~V-V~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVNaKAsQ~ 339 (452)
T KOG0514|consen 262 NLADSNGNTALHYAVSHANFDV-VSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVNAKASQH 339 (452)
T ss_pred hhhcCCCCeeeeeeecccchHH-HHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcchhhhhh
Confidence 6677788888888876655444 33344444568999999999999998865 457888888765 57887765 6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhC
Q 003309 773 GLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS 830 (832)
Q Consensus 773 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~ 830 (832)
|.|+|++|+.+|+.++|+.||..|||+|++|.+|.|+|+.|+++|| .|||++||..
T Consensus 340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGh--kEivklLLA~ 395 (452)
T KOG0514|consen 340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGH--KEIVKLLLAV 395 (452)
T ss_pred cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhCh--HHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999 9999999874
No 124
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.50 E-value=1.1e-14 Score=144.70 Aligned_cols=139 Identities=24% Similarity=0.254 Sum_probs=116.0
Q ss_pred eehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCCCC
Q 003309 654 IWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQ 733 (832)
Q Consensus 654 L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~ 733 (832)
+|.-++.|+...|.-.|-+..-|.|..+.. +.+++++++..++... ...|+..|+.+
T Consensus 4 if~wcregna~qvrlwld~tehdln~gddh---------------------gfsplhwaakegh~ai--vemll~rgarv 60 (448)
T KOG0195|consen 4 IFGWCREGNAFQVRLWLDDTEHDLNVGDDH---------------------GFSPLHWAAKEGHVAI--VEMLLSRGARV 60 (448)
T ss_pred hhhhhhcCCeEEEEEEecCccccccccccc---------------------CcchhhhhhhcccHHH--HHHHHhccccc
Confidence 455677788777776775666677764433 4567777666555444 44566778888
Q ss_pred CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 003309 734 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 813 (832)
Q Consensus 734 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A 813 (832)
|..+....||||+|+.+|+.++|+.||.+.+|||+.+..|+|||||||..|.-.+++-|+..||.+++.|..|.|||..|
T Consensus 61 n~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka 140 (448)
T KOG0195|consen 61 NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA 140 (448)
T ss_pred ccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 003309 814 VE 815 (832)
Q Consensus 814 ~~ 815 (832)
.-
T Consensus 141 kp 142 (448)
T KOG0195|consen 141 KP 142 (448)
T ss_pred ch
Confidence 43
No 125
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=6.7e-14 Score=138.41 Aligned_cols=94 Identities=29% Similarity=0.613 Sum_probs=72.0
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCC-CCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSK-SSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
+.++|||+|.+++..++||||||+|. +..|||+.-..++ |.|.
T Consensus 260 pdREGWLlKlgg~rvktWKrRWFiLt-dNCLYYFe~tTDKEPrGI----------------------------------- 303 (395)
T KOG0930|consen 260 PDREGWLLKLGGNRVKTWKRRWFILT-DNCLYYFEYTTDKEPRGI----------------------------------- 303 (395)
T ss_pred ccccceeeeecCCcccchhheeEEee-cceeeeeeeccCCCCCcc-----------------------------------
Confidence 56899999998887789999999999 5667777654433 3332
Q ss_pred cccccccccccccccCCcccCCcceEEEecCC----------------------ceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIKVDADQSDLRFCFRIISPT----------------------KNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~----------------------rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
|.|-.-+|+ ..+++.++|||+|..|+ -.|.++|.|.+|+++||.+|+.+|+
T Consensus 304 -----IpLeNlsir-~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 304 -----IPLENLSIR-EVEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred -----eecccccee-eccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 344444454 35667889999998743 2599999999999999999999886
No 126
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.49 E-value=1.7e-13 Score=124.42 Aligned_cols=112 Identities=26% Similarity=0.433 Sum_probs=54.4
Q ss_pred EEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccccc
Q 003309 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 374 (832)
Q Consensus 295 k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (832)
|+|||+|++....++||+|||+|..+++|.||+.+.....+.+...... .....+-.+ .. ...
T Consensus 1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~---~~~~~~~~~--------~~------~~~ 63 (112)
T PF15413_consen 1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESS---RVIRKGDWS--------IS------RRS 63 (112)
T ss_dssp EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS-------------TT----SB-SEEEE-----------------GG
T ss_pred CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchh---ceEeecccC--------cc------ccc
Confidence 6899999966657899999999997789999988433222211100000 000000000 00 000
Q ss_pred ccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHH
Q 003309 375 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 375 ~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
..+...... .+... .-...|.|.||+|+|+|.|+|.+|+.+||+||+.|
T Consensus 64 ~~~~~~~~~-~~~~~--~~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 64 SRIQGIKDK-NPFGE--IHLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp GT-EEEES--T--SS---SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred ccccccccC-CcccC--cCCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 000000000 11111 11356999999999999999999999999999875
No 127
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.49 E-value=9.7e-14 Score=121.31 Aligned_cols=64 Identities=41% Similarity=0.606 Sum_probs=59.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 003309 740 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 803 (832)
Q Consensus 740 g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~ 803 (832)
|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus 26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 26 GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 7789999999999999999999999999999999999999999999999999999999999875
No 128
>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of uncharacterized fungal proteins containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and an Arf GTPase Activating Protein (GAP) domain. These proteins may play roles in Arf-mediated functions involving membrane dynamics. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.49 E-value=3.8e-12 Score=123.23 Aligned_cols=180 Identities=19% Similarity=0.233 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHH-HHHHHHHHHHHHHH
Q 003309 14 KQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVM-TKFTIALREIGTYK 92 (832)
Q Consensus 14 a~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l-~~f~~~l~ei~~~~ 92 (832)
+++..+|+++..++..+++++|....+.+... ..+..+|...|.+++...... +++ ..|....+++..+.
T Consensus 1 at~~~le~kt~~mr~~~Kkl~kr~~~~~ea~~--~~~~~~f~~ll~~~~~~~~~~-------~al~~yf~~~~~~~~~~~ 71 (192)
T cd07608 1 ATLSNLERKTRLLRSYLKRLIKRIVKLIEAQD--QLVDLEFNELLSEAKFKNDFN-------VALDSYFDPFLLNLAFFL 71 (192)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcccccc-------HHHHHHhhHHHHHHHHHH
Confidence 46889999999999999999999999999754 345678888888887642211 233 56788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhH-hhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHH
Q 003309 93 EVLRSQVEHMLNDRLLQYVN-IDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFS 171 (832)
Q Consensus 93 ~~l~~~~~~~~~~pL~~f~~-~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld 171 (832)
.......+..+++|+..+.. .||+++...||.||..+.+|++.++||++.+.+++ +.+..+..-|+.|+...||
T Consensus 72 ~~~~~~lq~~~iep~~~~y~~~dik~~~~kkK~FEeeSKdYYs~l~kYLsn~~~~k-----~~DSK~l~KRk~FEL~RFD 146 (192)
T cd07608 72 RDVCQDLQLKKIEPLLKIYSINDIKELSDKKKDFEEESKDYYSWLSKYLSNESDKK-----RPDSKLLAKRKTFELSRFD 146 (192)
T ss_pred HHHHHHHHHHHHhhhhhccccchHHHHHHHhhhHHHHhHHHHHHHHHHhccccccc-----CcchHHHHHHHHHHHHHhh
Confidence 88888999999999999999 99999999999999999999999999999874221 3456788999999999999
Q ss_pred HHHHHHhhhh-hchhhHHHHHHHHHHHHHHHHHHHHH
Q 003309 172 LVTALSNVEA-KKRFEFLEAVSGTMDAHLRYFKQGYE 207 (832)
Q Consensus 172 ~~~~l~~~~~-~~~~e~l~~l~~~~~a~~~ff~~g~~ 207 (832)
|...|+++.. ++.-++++.+..|...|...+.....
T Consensus 147 Y~~~mqdl~ggr~~qell~~L~kf~~~q~~~~~~~~~ 183 (192)
T cd07608 147 YLNYLQDLHGGRKEQELLSILTKFINQQYDSIALTSN 183 (192)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHhHhh
Confidence 9999999984 55668999999999998877764433
No 129
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.47 E-value=1.8e-11 Score=123.08 Aligned_cols=191 Identities=12% Similarity=0.135 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh--------HHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHH-
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDG--------DIAFASALETFGGGHNDPISVAFGGPVMTKFTIAL- 85 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~--------~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l- 85 (832)
-+..+|.+++..++.+..+.|....|.+. +..+.+ ...+++++.+++....+.. ..+.+| .++..+
T Consensus 16 dl~~iEkrvD~~k~~~~~i~kkl~~~LQp-n~~~~aekr~kKlpe~~Ls~~M~es~keLg~dS---~lg~aL-e~~~~~e 90 (257)
T cd07620 16 DLVLVEQRVEPAKKAAQLIHKKLQGCLQS-QPGLEAEKRMKKLPLMALSISMAESFKDFDAES---SIRRVL-EMCCFMQ 90 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHhhhccHhHHHHHHHHHHhhCCCcc---hHHHHH-HHHHHHH
Confidence 46778999999999999999888888875 223322 2456677777776554432 245678 566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccc---------------------
Q 003309 86 REIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRK--------------------- 144 (832)
Q Consensus 86 ~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k--------------------- 144 (832)
+.|......+...++..|++||.++.++||+.+...||++.+.+.+||.+..||.+..|
T Consensus 91 ~~LA~~l~~~E~~Ve~~vl~PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~ 170 (257)
T cd07620 91 NMLANILADFEMKVEKDVLQPLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRA 170 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccCCcccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999955432
Q ss_pred CC---chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 003309 145 GT---KTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQ 218 (832)
Q Consensus 145 ~k---~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~ 218 (832)
.| ..+.++++.+.+...|-.|...+++|+. ++.+++..++.|+.+|..|++++.++++.+.|-|++
T Consensus 171 ~K~~~lkeE~eea~~K~E~~kd~~~a~Mynfl~--------kE~e~a~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~ 239 (257)
T cd07620 171 NKGEPLKEEEEECWRKLEQCKDQYSADLYHFAT--------KEDSYANYFIRLLELQAEYHKNSLEFLDKNITELKE 239 (257)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2345678888899999999999999888 788999999999999999999999999887776654
No 130
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.45 E-value=3.8e-13 Score=142.73 Aligned_cols=95 Identities=22% Similarity=0.164 Sum_probs=84.9
Q ss_pred CCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCccC----CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCcH
Q 003309 736 DDLEGCTL-LHLACDSADIGMLELLLQYGANINATD----SRGLTPLHRCILRGKAMFAKLLLTRGADPRAV-NREGKTS 809 (832)
Q Consensus 736 ~d~~g~Tp-Lh~Aa~~g~~~~v~~Ll~~gadvn~~d----~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-~~~g~Tp 809 (832)
+|..|+|+ ||.|+..|+.+++++|+++||++|.++ ..|.||||+|+..|+.+++++|+++||+++.+ +..|.||
T Consensus 28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp 107 (300)
T PHA02884 28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP 107 (300)
T ss_pred cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence 46667665 556677799999999999999999974 58999999999999999999999999999986 4679999
Q ss_pred HHHHHHcCCCcHHHHHHHhhCCC
Q 003309 810 LELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 810 L~~A~~~g~~d~~iv~lLl~~gg 832 (832)
||+|+..|+ .+++++|+++|+
T Consensus 108 Lh~Aa~~~~--~eivklLL~~GA 128 (300)
T PHA02884 108 LYISVLHGC--LKCLEILLSYGA 128 (300)
T ss_pred HHHHHHcCC--HHHHHHHHHCCC
Confidence 999999998 999999999875
No 131
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.43 E-value=4.3e-13 Score=113.77 Aligned_cols=87 Identities=29% Similarity=0.514 Sum_probs=70.3
Q ss_pred EEEEecCCCCCCCCceeEEEEe-CCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccccc
Q 003309 297 GYLSKRSSNLRGDWKRRFFVLD-SRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARH 375 (832)
Q Consensus 297 G~L~K~~~~~~~~WkrRwfvL~-~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (832)
|||.|+..+..++|+||||+|+ .+|.|.||.++.+. ..++
T Consensus 1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~---------------------------------------~~rG 41 (89)
T PF15409_consen 1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSG---------------------------------------KLRG 41 (89)
T ss_pred CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCCC---------------------------------------eeEe
Confidence 8999987777889999999994 48999999976431 2345
Q ss_pred cccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHH
Q 003309 376 TVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 376 ~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
.|++..+.+... . +..+|+|.+....|+|.|.|++|++.|+.||+.|
T Consensus 42 si~v~~a~is~~--~--~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 42 SIDVSLAVISAN--K--KSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred EEEccceEEEec--C--CCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 677777766542 2 2457999999999999999999999999999875
No 132
>PHA02792 ankyrin-like protein; Provisional
Probab=99.43 E-value=3e-13 Score=154.29 Aligned_cols=115 Identities=20% Similarity=0.210 Sum_probs=95.9
Q ss_pred CccccccccccCCCCCCCcCCCCC--CcHHHHHHHcCCH---HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHH
Q 003309 717 DRSSSGSLNLAGTSEGQTMDDLEG--CTLLHLACDSADI---GMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKL 791 (832)
Q Consensus 717 ~~~~~~~lll~~~~~~~~~~d~~g--~TpLh~Aa~~g~~---~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~ 791 (832)
.+......+|+..|++++.+|..| .||||+|+..... +++++|+.+|||+|.+|..|+||||+|+..++.+++++
T Consensus 349 ~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivel 428 (631)
T PHA02792 349 NRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEW 428 (631)
T ss_pred cCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHH
Confidence 344455566778899999998775 6999998876654 46889999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCcHHHHHHHc--C-C-----CcHHHHHHHhhCC
Q 003309 792 LLTRGADPRAVNREGKTSLELAVES--N-F-----ADSEVLAILSDSH 831 (832)
Q Consensus 792 Ll~~gad~~~~~~~g~TpL~~A~~~--g-~-----~d~~iv~lLl~~g 831 (832)
|+++|++++.+|..|.|||++|+.. + . ...+++++|+++|
T Consensus 429 LLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~ 476 (631)
T PHA02792 429 LIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKL 476 (631)
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999762 1 1 0135688888765
No 133
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.42 E-value=3.9e-11 Score=120.86 Aligned_cols=185 Identities=21% Similarity=0.297 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHh-----------------------hCCCCCCCcc
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETF-----------------------GGGHNDPISV 71 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f-----------------------~~~~~~~~~~ 71 (832)
...++|.+|+.....+.+|...|..|++. +.++.+.-....++.+. +....+..+
T Consensus 27 dF~eme~~vdvt~~~v~~i~~~tteylqp-npa~rakl~~~n~lsKvrG~~k~~~ypq~e~~Lg~~mik~gkeLg~dSs- 104 (366)
T KOG1118|consen 27 DFLEMEKEVDVTSKGVTKILAKTTEYLQP-NPASRAKLAMLNTLSKVRGQVKEKGYPQTEGLLGDVMIKHGKELGDDSS- 104 (366)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhHHhcCC-ChhhhhHHHHHHHHHHhcccccCCCCccchhHHHHHHHHHHHhcCCCcc-
Confidence 35789999999999999999999999995 56665544444444444 332222221
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHH
Q 003309 72 AFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVA 151 (832)
Q Consensus 72 ~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~ 151 (832)
.|.+|...|+++.+|....+.|.+.+...|++||+++-..+++.+...||+.|-.|.+||....| +.|- +.+.+
T Consensus 105 --~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkkk---~~K~-~dEel 178 (366)
T KOG1118|consen 105 --FGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKKK---QGKI-KDEEL 178 (366)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHH---hccC-ChHHH
Confidence 34578889999999999999999999999999999998999999999999999999999965544 3333 35667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003309 152 AILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPY 215 (832)
Q Consensus 152 ~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~ 215 (832)
+.+.+.+++.+..++..++++.. .++|.+++|..++++|..|+++..++++.|+..
T Consensus 179 rqA~eKfEESkE~aE~sM~nlle--------~d~eqvsqL~~Li~aqLdfhrqs~~iL~~l~~~ 234 (366)
T KOG1118|consen 179 RQALEKFEESKELAEDSMFNLLE--------NDVEQVSQLSALIQAQLDFHRQSTQILQELQMK 234 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999888877 688999999999999999999999998776543
No 134
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.42 E-value=4.7e-13 Score=130.00 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=86.8
Q ss_pred cccCCCCcccccccccCccc-cccccccCCCCCCCcCC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHH
Q 003309 701 QTSLERSSSSLTGNSSDRSS-SGSLNLAGTSEGQTMDD-LEGCTLLHLACDSADIGMLELLLQ-YGANINATDSRGLTPL 777 (832)
Q Consensus 701 ~~~~~~~~~~l~~~~~~~~~-~~~lll~~~~~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~-~gadvn~~d~~g~TpL 777 (832)
.+..+.+++++++..+.... ....+|+..|++++.++ ..|.||||+|+..|+.+++++|+. .|++++.+|..|.|||
T Consensus 51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL 130 (154)
T PHA02736 51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPY 130 (154)
T ss_pred hcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHH
Confidence 35567889998887665433 23456778899999998 489999999999999999999998 4999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCC
Q 003309 778 HRCILRGKAMFAKLLLTRGADPR 800 (832)
Q Consensus 778 h~A~~~g~~~~v~~Ll~~gad~~ 800 (832)
|+|+..|+.+++++|+.+|++++
T Consensus 131 ~~A~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 131 YVACERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred HHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999875
No 135
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.41 E-value=5.8e-13 Score=163.17 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=115.3
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCC
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS 730 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~ 730 (832)
...||.|+..|+.+. +++|+++|+|+|..+..+ .||+++|+..++...+..++ ..+
T Consensus 559 ~TpLh~Aa~~g~~~~-v~~Ll~~gadin~~d~~G---------------------~TpL~~A~~~g~~~iv~~L~--~~~ 614 (823)
T PLN03192 559 RTPLHIAASKGYEDC-VLVLLKHACNVHIRDANG---------------------NTALWNAISAKHHKIFRILY--HFA 614 (823)
T ss_pred CCHHHHHHHcChHHH-HHHHHhcCCCCCCcCCCC---------------------CCHHHHHHHhCCHHHHHHHH--hcC
Confidence 356888888887664 456778999999876554 67787777776666554443 333
Q ss_pred CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CcH
Q 003309 731 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREG-KTS 809 (832)
Q Consensus 731 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g-~Tp 809 (832)
+..+ ...|.+|||.||..|+.+++++|+++|+|+|.+|..|+||||+|+..|+.+++++|+++||+++..|..| .||
T Consensus 615 ~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~ 692 (823)
T PLN03192 615 SISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSP 692 (823)
T ss_pred cccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCH
Confidence 3332 3457899999999999999999999999999999999999999999999999999999999999999988 999
Q ss_pred HHHHHHc
Q 003309 810 LELAVES 816 (832)
Q Consensus 810 L~~A~~~ 816 (832)
++++...
T Consensus 693 ~~l~~~~ 699 (823)
T PLN03192 693 TELRELL 699 (823)
T ss_pred HHHHHHH
Confidence 9988654
No 136
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.41 E-value=1.4e-12 Score=115.08 Aligned_cols=97 Identities=24% Similarity=0.322 Sum_probs=69.0
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccc
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (832)
-+++|+|.|.+++ +.|+| ||+|-+|-++|+....... ..-.
T Consensus 2 ~ikEG~L~K~~~k--~~~~R-~~FLFnD~LlY~~~~~~~~------------------------------------~~y~ 42 (99)
T cd01220 2 FIRQGCLLKLSKK--GLQQR-MFFLFSDLLLYTSKSPTDQ------------------------------------NSFR 42 (99)
T ss_pred eeeEEEEEEEeCC--CCceE-EEEEccceEEEEEeecCCC------------------------------------ceEE
Confidence 3789999999653 35664 5555558888875543210 0112
Q ss_pred ccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 373 ~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.++.|.+....|....+..+.+|||+|.++.++|+|+|.|++|+++||.+|+.||.
T Consensus 43 ~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 43 ILGHLPLRGMLTEESEHEWGVPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEEEEEcCceEEeeccCCcCCceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 33556676666654333335689999999999999999999999999999999985
No 137
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.41 E-value=1.6e-13 Score=153.27 Aligned_cols=165 Identities=21% Similarity=0.164 Sum_probs=132.2
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
+.|..|++.+|...|.++|...+.. .+ ..+.-.+..-.+.++..+.|.++.++..++..+ ..+|+...+
T Consensus 5 qel~~a~ka~d~~tva~ll~~~~~r------~~---~l~~~trsds~n~qd~~gfTalhha~Lng~~~i--s~llle~ea 73 (854)
T KOG0507|consen 5 QELIDACKAGDYDTVALLLSSKKGR------SG---LLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQI--SKLLLDYEA 73 (854)
T ss_pred hhHHHhhhcccHHHHHHhccCCCCC------CC---CCCCCCCCccccccCccchhHHHHHHhcCchHH--HHHHhcchh
Confidence 5688899999999999998554431 11 000000011113344455666666665555444 456677777
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE 811 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~ 811 (832)
-+++.|..|.+|||+|++.|+.+++++||..+..+|+.+..|.||||.|++.||.+++.+||.+|+|+-++|..+.|+|.
T Consensus 74 ~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ld 153 (854)
T KOG0507|consen 74 LLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLD 153 (854)
T ss_pred hhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHhh
Q 003309 812 LAVESNFADSEVLAILSD 829 (832)
Q Consensus 812 ~A~~~g~~d~~iv~lLl~ 829 (832)
+|++.|. .++|++|+.
T Consensus 154 lA~qfgr--~~Vvq~ll~ 169 (854)
T KOG0507|consen 154 LASRFGR--AEVVQMLLQ 169 (854)
T ss_pred HHHHhhh--hHHHHHHhh
Confidence 9999999 999999986
No 138
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.38 E-value=9.3e-13 Score=142.79 Aligned_cols=166 Identities=22% Similarity=0.274 Sum_probs=125.8
Q ss_pred cccceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhccc-----cCCCCccccccc--
Q 003309 649 SVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQT-----SLERSSSSLTGN-- 714 (832)
Q Consensus 649 ~~~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~-----~~~~~~~~l~~~-- 714 (832)
+-...||.++-..+.. |+++|++.|++||..+..+ ++-+++.++.+++....+ ..+..|.-++..
T Consensus 72 DglTalhq~~id~~~e-~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea 150 (527)
T KOG0505|consen 72 DGLTALHQACIDDNLE-MVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEA 150 (527)
T ss_pred ccchhHHHHHhcccHH-HHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcc
Confidence 3346677776665555 5567779999999977654 566777888877763333 233333332211
Q ss_pred ----------ccCcccc------------ccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCC
Q 003309 715 ----------SSDRSSS------------GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSR 772 (832)
Q Consensus 715 ----------~~~~~~~------------~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~ 772 (832)
..+..+. -....+..|...+.++..|.|+||.|+..|..++.++||+.|.+++.+|.+
T Consensus 151 ~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~d 230 (527)
T KOG0505|consen 151 TLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYD 230 (527)
T ss_pred hhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccccccc
Confidence 1111111 011233477888888888999999999999999999999999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 003309 773 GLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 815 (832)
Q Consensus 773 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~ 815 (832)
||||||.|+..|+.+++++|+++|++.+..+..|.||+.+|..
T Consensus 231 gWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de 273 (527)
T KOG0505|consen 231 GWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE 273 (527)
T ss_pred CCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence 9999999999999999999999999999999999999999864
No 139
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.37 E-value=1.6e-12 Score=118.11 Aligned_cols=95 Identities=19% Similarity=0.394 Sum_probs=67.5
Q ss_pred EEEEEEe-cCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccc
Q 003309 295 RQGYLSK-RSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (832)
Q Consensus 295 k~G~L~K-~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (832)
-.|||.. +..+..++|+||||+|. ++.|+|++.+.+.. ...+
T Consensus 3 ~~GfL~~~q~~~~~k~W~RRWFvL~-g~~L~y~k~p~d~~------------------------------------~~~P 45 (122)
T cd01263 3 YHGFLTMFEDTSGFGAWHRRWCALE-GGEIKYWKYPDDEK------------------------------------RKGP 45 (122)
T ss_pred cceeEEEEeccCCCCCceEEEEEEe-CCEEEEEcCCCccc------------------------------------cCCc
Confidence 4699985 44456689999999999 78899988765411 1223
Q ss_pred cccccccccccccC----CcccCCcceEEEec--CC-----------------ce-EEEEeCCHHHHHHHHHHHHHH
Q 003309 374 RHTVNLLTSTIKVD----ADQSDLRFCFRIIS--PT-----------------KN-YTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 374 ~~~i~l~~~~v~~~----~~~~~r~~~F~I~t--~~-----------------rt-~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
.+.|+|..|.+... .+...|+++|.|.. |. |+ ++|.|||++|+++||.||+.+
T Consensus 46 lg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 46 TGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred eEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 45677777766432 13446789999853 22 33 679999999999999999853
No 140
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.37 E-value=1.5e-12 Score=120.92 Aligned_cols=88 Identities=33% Similarity=0.360 Sum_probs=83.2
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcH
Q 003309 743 LLHLACDSADIGMLELLLQYGAN-INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADS 821 (832)
Q Consensus 743 pLh~Aa~~g~~~~v~~Ll~~gad-vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~ 821 (832)
-+.+|+..+.+..|+.||.-.++ ||.+|.+|.||||.|+++||.+||..|+..||+++.+...|+||||-||..++ .
T Consensus 66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN--~ 143 (228)
T KOG0512|consen 66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN--F 143 (228)
T ss_pred HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc--h
Confidence 46789999999999999988776 89999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHhhCCC
Q 003309 822 EVLAILSDSHG 832 (832)
Q Consensus 822 ~iv~lLl~~gg 832 (832)
+++-+||++|+
T Consensus 144 ~va~~LLqhga 154 (228)
T KOG0512|consen 144 EVAGRLLQHGA 154 (228)
T ss_pred hHHHHHHhccC
Confidence 99999999885
No 141
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.36 E-value=2.9e-11 Score=123.64 Aligned_cols=200 Identities=18% Similarity=0.169 Sum_probs=144.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--hhHHHHHHHHH--------HhhCCCCCCCccccCchHH
Q 003309 9 SPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGY--DGDIAFASALE--------TFGGGHNDPISVAFGGPVM 78 (832)
Q Consensus 9 SP~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~--~~~~~f~~~l~--------~f~~~~~~~~~~~~~~~~l 78 (832)
.|-++.++..+-..+..--.||.+..+-...=..-.+..- ..-+.|..+|. .|+....+. -..+|.+|
T Consensus 32 P~n~~es~~~~~~~~~~k~~~l~~~t~~~e~~~~l~~~~~~~~~pkTl~~aLs~~m~~~~~~l~~~~~~~--~s~lg~aL 109 (242)
T cd07600 32 PPNLTESISDFSKTIGSKVSELSKATSPTEAQKVLLGTPAPAKLPKTLNHALSRAALASSLELKSLEPED--EDPLSKAL 109 (242)
T ss_pred CCCchHHHHHHHHhhHHHHHHHhhcCChhhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHHhCccCCCC--CCHHHHHH
Confidence 6778888888877777666666655533331111010000 00123333332 333321111 12356899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHH
Q 003309 79 TKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEEL 158 (832)
Q Consensus 79 ~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l 158 (832)
.+||.+..+|...+..+...+...|+.||+.|+.+||+.+...||+.+..|.+||.+..++.+.++. ++..+...++
T Consensus 110 ~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~ka~~~---~k~~~~~~e~ 186 (242)
T cd07600 110 GKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKSAEPA---EKQEAARVEV 186 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998666432 2222334456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003309 159 HSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPY 215 (832)
Q Consensus 159 ~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~ 215 (832)
..+...|..+.=+-+..|..+-.. .++++.|..|+.+|..||+++.+.+.++.+.
T Consensus 187 E~aEdef~~a~E~a~~~M~~il~~--~e~i~~L~~fv~AQl~Yh~~~~e~L~~l~~~ 241 (242)
T cd07600 187 ETAEDEFVSATEEAVELMKEVLDN--PEPLQLLKELVKAQLAYHKTAAELLEELLSV 241 (242)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 667777777776777777777433 7899999999999999999999999888653
No 142
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.32 E-value=1.4e-12 Score=102.92 Aligned_cols=55 Identities=45% Similarity=0.715 Sum_probs=25.5
Q ss_pred HHHcC-CCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 003309 759 LLQYG-ANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 813 (832)
Q Consensus 759 Ll~~g-advn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A 813 (832)
||++| +++|.+|..|.||||+|+..|+.++|++|++.|++++.+|.+|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 45666 67777777777777777777777777777777777777777777777765
No 143
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.32 E-value=4e-12 Score=154.81 Aligned_cols=123 Identities=18% Similarity=0.136 Sum_probs=101.7
Q ss_pred CCCCcccccccccCccccccccccCCCCCCCcCC--------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 003309 704 LERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDD--------------LEGCTLLHLACDSADIGMLELLLQYGANINAT 769 (832)
Q Consensus 704 ~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d--------------~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~ 769 (832)
.|.||+++|+..++... ..+|+..|++++.++ ..|.||||+|+..|+.+++++|+++|+|+|.+
T Consensus 127 ~G~TpLhlAa~~~~~ei--VklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~ 204 (743)
T TIGR00870 127 PGITALHLAAHRQNYEI--VKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA 204 (743)
T ss_pred CCCcHHHHHHHhCCHHH--HHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhH
Confidence 46788888777765544 445666788887653 35899999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHcC---------CHHHHHHHHhCCCCC-------CCCCCCCCcHHHHHHHcCCCcHHHHHHHhhC
Q 003309 770 DSRGLTPLHRCILRG---------KAMFAKLLLTRGADP-------RAVNREGKTSLELAVESNFADSEVLAILSDS 830 (832)
Q Consensus 770 d~~g~TpLh~A~~~g---------~~~~v~~Ll~~gad~-------~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~ 830 (832)
|..|+||||+|+..+ ...+.++++..++.. +..|.+|.||||+|+..|+ .+++++|++.
T Consensus 205 d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~--~~l~~lLL~~ 279 (743)
T TIGR00870 205 DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGR--IVLFRLKLAI 279 (743)
T ss_pred hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCC--ccHHHHHHHH
Confidence 999999999999986 334667777665554 6779999999999999999 8999999983
No 144
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.31 E-value=7.7e-12 Score=112.71 Aligned_cols=84 Identities=18% Similarity=0.367 Sum_probs=57.8
Q ss_pred CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccccccccccccccc
Q 003309 306 LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIK 385 (832)
Q Consensus 306 ~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~ 385 (832)
..+.|++|||+|+ ++.|+||+.+...... ......|++..+.+.
T Consensus 19 ~~~~Wk~r~~vL~-~~~L~~ykd~~~~~~~-----------------------------------~~~~~~i~l~~~~i~ 62 (104)
T cd01253 19 SNRSWDNVYGVLC-GQSLSFYKDEKMAAEN-----------------------------------VHGEPPVDLTGAQCE 62 (104)
T ss_pred CCCCcceEEEEEe-CCEEEEEecCcccccC-----------------------------------CCCCCcEeccCCEEE
Confidence 3568999999999 5677777765321000 000012455455554
Q ss_pred cCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHH
Q 003309 386 VDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 386 ~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~ 425 (832)
...+...++++|.|.+++ ++|+|||+|+++|.+||.+|+.
T Consensus 63 ~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 63 VASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred ecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 443444678999997665 8999999999999999999975
No 145
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.31 E-value=2.5e-12 Score=143.86 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=114.7
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhc-----cccCCCCcccccccccCcc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNE-----QTSLERSSSSLTGNSSDRS 719 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~-----~~~~~~~~~~l~~~~~~~~ 719 (832)
..|++|+-+|+...+ +||++..+-++..+..+ ++.+++.+++.++... .+..+.+++++++..++..
T Consensus 51 Talhha~Lng~~~is-~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~d 129 (854)
T KOG0507|consen 51 TLLHHAVLNGQNQIS-KLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLE 129 (854)
T ss_pred hHHHHHHhcCchHHH-HHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchH
Confidence 568888888887755 45557666665555433 4556666666666533 2234455666555544433
Q ss_pred ccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--------CccCCCCCcHHHHHHHcCCHHHHHH
Q 003309 720 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANI--------NATDSRGLTPLHRCILRGKAMFAKL 791 (832)
Q Consensus 720 ~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadv--------n~~d~~g~TpLh~A~~~g~~~~v~~ 791 (832)
+..+|+..++++-+++..+.|+|-+|++.|..++|++|+....++ ..++..+-+|||.|+.+||.+|++.
T Consensus 130 --vv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ 207 (854)
T KOG0507|consen 130 --VVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQA 207 (854)
T ss_pred --HHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHH
Confidence 334456666777777777777777777777777777777652221 1233455677888888888888888
Q ss_pred HHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 792 LLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 792 Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|+..|.++|.....| |+||.|+.+|. .++|.+|++.|+
T Consensus 208 ll~ag~din~~t~~g-talheaalcgk--~evvr~ll~~gi 245 (854)
T KOG0507|consen 208 LLEAGFDINYTTEDG-TALHEAALCGK--AEVVRFLLEIGI 245 (854)
T ss_pred HHhcCCCcccccccc-hhhhhHhhcCc--chhhhHHHhhcc
Confidence 888888888776654 78888888877 778888877663
No 146
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.31 E-value=5.3e-12 Score=105.05 Aligned_cols=87 Identities=22% Similarity=0.288 Sum_probs=81.8
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHH
Q 003309 743 LLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSE 822 (832)
Q Consensus 743 pLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~ 822 (832)
-+.+++.+|.++-|+..+..|.+||..- .|++|||+|+..|+.+++++|+..||+++.+|..|-|||..|+..|| ..
T Consensus 5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH--~~ 81 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGH--RD 81 (117)
T ss_pred hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhh--HH
Confidence 4678999999999999999999988654 89999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHhhCCC
Q 003309 823 VLAILSDSHG 832 (832)
Q Consensus 823 iv~lLl~~gg 832 (832)
+|++||..|+
T Consensus 82 cVklLL~~GA 91 (117)
T KOG4214|consen 82 CVKLLLQNGA 91 (117)
T ss_pred HHHHHHHcCc
Confidence 9999999885
No 147
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.30 E-value=9.2e-12 Score=114.75 Aligned_cols=36 Identities=19% Similarity=0.458 Sum_probs=33.1
Q ss_pred cCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHH
Q 003309 391 SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 391 ~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
..+++.|.|.+++|+|.|.|+|+.++.+||++|+.|
T Consensus 86 ~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 86 TGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred CCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 456899999999999999999999999999999864
No 148
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.30 E-value=6.4e-12 Score=142.70 Aligned_cols=143 Identities=24% Similarity=0.221 Sum_probs=112.4
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
.+||.||.+.|.+-|. +|++.|||||+..-... .+.+...... ...
T Consensus 186 SaLHiAIv~~~~~~V~-lLl~~gADV~aRa~G~F-----------F~~~dqk~~r----------------------k~T 231 (782)
T KOG3676|consen 186 SALHIAIVNRDAELVR-LLLAAGADVHARACGAF-----------FCPDDQKASR----------------------KST 231 (782)
T ss_pred chHHHHHHhccHHHHH-HHHHcCCchhhHhhccc-----------cCcccccccc----------------------ccc
Confidence 4699999999998775 55599999998422110 0000000000 000
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCcH
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD--PRAVNREGKTS 809 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~~~~g~Tp 809 (832)
+..-.-..|..||-+||..++.+++++|+++|||+|++|..|+|.||..+..-..++..++|++|++ ...+|..|.||
T Consensus 232 ~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTP 311 (782)
T KOG3676|consen 232 NYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTP 311 (782)
T ss_pred CCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCh
Confidence 0000123589999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHcCCCcHHHHHHHhhC
Q 003309 810 LELAVESNFADSEVLAILSDS 830 (832)
Q Consensus 810 L~~A~~~g~~d~~iv~lLl~~ 830 (832)
|.+|+..|. .+|.+.+++.
T Consensus 312 LtLAaklGk--~emf~~ile~ 330 (782)
T KOG3676|consen 312 LTLAAKLGK--KEMFQHILER 330 (782)
T ss_pred HHHHHHhhh--HHHHHHHHHh
Confidence 999999999 9999998875
No 149
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.30 E-value=7.7e-12 Score=124.92 Aligned_cols=92 Identities=32% Similarity=0.441 Sum_probs=84.5
Q ss_pred CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 003309 734 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINA-TDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLEL 812 (832)
Q Consensus 734 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~-~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~ 812 (832)
|..|..|.|||..|+..|+.++|++||+.|||||. ++..+.||||+|+..|+.++.++|++.|+.+...|.-|+|+-.+
T Consensus 39 n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqm 118 (396)
T KOG1710|consen 39 NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQM 118 (396)
T ss_pred hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHH
Confidence 44577899999999999999999999999999986 45679999999999999999999999999999999999999999
Q ss_pred HHHcCCCcHHHHHHH
Q 003309 813 AVESNFADSEVLAIL 827 (832)
Q Consensus 813 A~~~g~~d~~iv~lL 827 (832)
|+--|| .++|.++
T Consensus 119 AAFVG~--H~CV~iI 131 (396)
T KOG1710|consen 119 AAFVGH--HECVAII 131 (396)
T ss_pred HHHhcc--hHHHHHH
Confidence 999999 7777665
No 150
>PHA02792 ankyrin-like protein; Provisional
Probab=99.30 E-value=3.9e-12 Score=145.30 Aligned_cols=105 Identities=18% Similarity=0.136 Sum_probs=79.0
Q ss_pred cccCCCCCCCcCCCCCCcHHHHHHH-cCCHHHHHHHHHcCCC------------------------------------CC
Q 003309 725 NLAGTSEGQTMDDLEGCTLLHLACD-SADIGMLELLLQYGAN------------------------------------IN 767 (832)
Q Consensus 725 ll~~~~~~~~~~d~~g~TpLh~Aa~-~g~~~~v~~Ll~~gad------------------------------------vn 767 (832)
+|+..|+++|.++..|.||||+|+. .++++++++||++||| +|
T Consensus 90 ~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 169 (631)
T PHA02792 90 LLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTD 169 (631)
T ss_pred HHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccc
Confidence 3344455555555555555555533 3555555555555554 34
Q ss_pred ccCCCCCcHHHHHHHcC-------CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhh
Q 003309 768 ATDSRGLTPLHRCILRG-------KAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSD 829 (832)
Q Consensus 768 ~~d~~g~TpLh~A~~~g-------~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~ 829 (832)
..|..|.||||+|+..+ +.+++++|+.+|++++.+|..|.||||+|+...+.+.||+++|++
T Consensus 170 ~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~ 238 (631)
T PHA02792 170 YDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFD 238 (631)
T ss_pred cCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHh
Confidence 56677999999999999 899999999999999999999999999999998657999999986
No 151
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.29 E-value=9.2e-12 Score=108.49 Aligned_cols=82 Identities=16% Similarity=0.350 Sum_probs=63.6
Q ss_pred CCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccccccccccccccccc
Q 003309 307 RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKV 386 (832)
Q Consensus 307 ~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~ 386 (832)
.++||||||+|+ ++.|+||+++.+. ...+...+++..|.|.+
T Consensus 17 ~K~~KrrwF~lk-~~~L~YyK~kee~-------------------------------------~~~p~i~lnl~gcev~~ 58 (106)
T cd01237 17 LKGYKQYWFTFR-DTSISYYKSKEDS-------------------------------------NGAPIGQLNLKGCEVTP 58 (106)
T ss_pred hhhheeEEEEEe-CCEEEEEccchhc-------------------------------------CCCCeEEEecCceEEcc
Confidence 467999999999 7888888776541 11223457777888865
Q ss_pred CCcccCCcceEEEecCC----ceEEEEeCCHHHHHHHHHHHHHH
Q 003309 387 DADQSDLRFCFRIISPT----KNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 387 ~~~~~~r~~~F~I~t~~----rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
+..-..+.|+|.+.+|. ++|+|.|+||+++..||+|++.|
T Consensus 59 dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rla 102 (106)
T cd01237 59 DVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLA 102 (106)
T ss_pred cccccccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHh
Confidence 43223557999999988 99999999999999999999866
No 152
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.28 E-value=2.3e-11 Score=112.33 Aligned_cols=121 Identities=33% Similarity=0.456 Sum_probs=103.0
Q ss_pred CCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc
Q 003309 704 LERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILR 783 (832)
Q Consensus 704 ~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~ 783 (832)
.+.++++.++..+.. .....+...+.+.+..+..|.||||.|+..++.+++++|+..|++++..+..|.||+|+|+..
T Consensus 6 ~g~t~l~~a~~~~~~--~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~ 83 (126)
T cd00204 6 DGRTPLHLAASNGHL--EVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN 83 (126)
T ss_pred CCCCHHHHHHHcCcH--HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 455666666655544 334445566677688888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHh
Q 003309 784 GKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILS 828 (832)
Q Consensus 784 g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl 828 (832)
++.+++++|+..|.+++..+..|.||+++|...++ .+++++|+
T Consensus 84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~Ll 126 (126)
T cd00204 84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH--LEVVKLLL 126 (126)
T ss_pred CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCC--HHHHHHhC
Confidence 99999999999999999999999999999999987 88998875
No 153
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.28 E-value=7.7e-12 Score=98.04 Aligned_cols=54 Identities=44% Similarity=0.648 Sum_probs=37.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHH
Q 003309 740 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 793 (832)
Q Consensus 740 g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll 793 (832)
|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 567777777777777777777777777777777777777777777777777775
No 154
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.27 E-value=4e-11 Score=110.78 Aligned_cols=94 Identities=38% Similarity=0.586 Sum_probs=89.3
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 003309 736 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 815 (832)
Q Consensus 736 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~ 815 (832)
.|.+|.||||+|+..|+.+++++|+..|++++..+..|.||||+|+..+..+++++|+..|++++..+..|.||+|+|+.
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~ 82 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR 82 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHhhCC
Q 003309 816 SNFADSEVLAILSDSH 831 (832)
Q Consensus 816 ~g~~d~~iv~lLl~~g 831 (832)
.++ .+++++|++.+
T Consensus 83 ~~~--~~~~~~L~~~~ 96 (126)
T cd00204 83 NGN--LDVVKLLLKHG 96 (126)
T ss_pred cCc--HHHHHHHHHcC
Confidence 998 99999999864
No 155
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.27 E-value=1.3e-11 Score=126.84 Aligned_cols=107 Identities=36% Similarity=0.450 Sum_probs=99.6
Q ss_pred ccccccCCCCCCCcCCCCCCcHHHHHHHcCC-----HHHHHHHHHcCC---CCCccCCCCCcHHHHHHHcCCHHHHHHHH
Q 003309 722 GSLNLAGTSEGQTMDDLEGCTLLHLACDSAD-----IGMLELLLQYGA---NINATDSRGLTPLHRCILRGKAMFAKLLL 793 (832)
Q Consensus 722 ~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~-----~~~v~~Ll~~ga---dvn~~d~~g~TpLh~A~~~g~~~~v~~Ll 793 (832)
....+...+++++.++.+|.||||+|+..|+ .+++++||+.|+ +.+.+|..|+||||+|+..|+.+++.+|+
T Consensus 88 ~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll 167 (235)
T COG0666 88 IVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLL 167 (235)
T ss_pred HHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHH
Confidence 3356788899999999999999999999999 999999999999 56666999999999999999999999999
Q ss_pred hCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhC
Q 003309 794 TRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS 830 (832)
Q Consensus 794 ~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~ 830 (832)
+.|++++.++..|.||+++|+..++ .+++.+|++.
T Consensus 168 ~~~~~~~~~~~~g~t~l~~a~~~~~--~~~~~~l~~~ 202 (235)
T COG0666 168 EAGADPNSRNSYGVTALDPAAKNGR--IELVKLLLDK 202 (235)
T ss_pred hcCCCCcccccCCCcchhhhcccch--HHHHHHHHhc
Confidence 9999999999999999999999998 8999998875
No 156
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.25 E-value=4.1e-11 Score=108.60 Aligned_cols=102 Identities=19% Similarity=0.352 Sum_probs=72.3
Q ss_pred EEEEEEecC---------CCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCC
Q 003309 295 RQGYLSKRS---------SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG 365 (832)
Q Consensus 295 k~G~L~K~~---------~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (832)
|+|+|..+- +..++.|+++||||+ ++.|++|+.......+.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~-g~~L~~yKDe~~~~~~~----------------------------- 51 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILR-GLVLYLQKDEHKPGKSL----------------------------- 51 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEE-CCEEEEEccCccccccc-----------------------------
Confidence 578886432 112468999999999 57777777764311100
Q ss_pred CCCccccccccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 366 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 366 ~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
........|.|..+.+.+..+...|++.|.|.+++ +.|.|||.+++||+.||.+|+.+++.
T Consensus 52 ---~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 52 ---SETELKNAISIHHALATRASDYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred ---ccccccceEEeccceeEeeccccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 00011134566666655566777899999999986 89999999999999999999998763
No 157
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.24 E-value=7.7e-12 Score=98.68 Aligned_cols=51 Identities=39% Similarity=0.479 Sum_probs=34.0
Q ss_pred CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Q 003309 730 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRC 780 (832)
Q Consensus 730 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A 780 (832)
..+++..|..|.||||+||..|+.+++++|++.|++++.+|..|+||||+|
T Consensus 6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 489999999999999999999999999999999999999999999999997
No 158
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.21 E-value=5.3e-09 Score=105.93 Aligned_cols=199 Identities=14% Similarity=0.231 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHH
Q 003309 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVL 95 (832)
Q Consensus 16 i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l 95 (832)
....|.....+++...+|.|.+++|.+++.-...++..++..|..+.....+.. +......+.....++......+
T Consensus 13 fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~~~~~~~~~~----~~~~~e~y~~~~~~l~~~~~~~ 88 (225)
T cd07590 13 LEREVQKLQQLESTTKKLYKDMKKYIEAVLALSKAEQRLSQDLASGPLCEDNDE----LRNLVEALDSVTTQLDKTVQEL 88 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCChH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888889999999999999888888888999999988754322211 1124566666777777777788
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCC--ch--hHHhHHHHHHHHHHHHHHHHHHH
Q 003309 96 RSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT--KT--DVAAILEEELHSARSAFEQARFS 171 (832)
Q Consensus 96 ~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k--~~--~~~~e~~~~l~~~r~~f~~~sld 171 (832)
+..++.+++.||.+|+.. ++.+++.-++-+....+||.+..++.++..++ .+ .++..++.++..++..|....-.
T Consensus 89 ~~~~~~~vl~Pl~~~~s~-f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~ 167 (225)
T cd07590 89 VNLIQKTFIEPLKRLRSV-FPSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIK 167 (225)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999987 89999999999999999999999998775332 33 67788899999999999999999
Q ss_pred HHHHHHhhhhhchhhHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003309 172 LVTALSNVEAKKRFEFLEA-VSGTMDAHLRYFKQGYELLHQMEPYINQVL 220 (832)
Q Consensus 172 ~~~~l~~~~~~~~~e~l~~-l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~ 220 (832)
+...|..+-..+ +.|+.+ +-+|+.+|..||..++..+.++.++++.-.
T Consensus 168 L~~ELP~l~~~r-~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d~~~ 216 (225)
T cd07590 168 LLEELPKFYNGR-TDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLDNPI 216 (225)
T ss_pred HHHHhHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999998887654 355655 558999999999999999999998887643
No 159
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=1.3e-11 Score=132.11 Aligned_cols=100 Identities=28% Similarity=0.353 Sum_probs=82.8
Q ss_pred CCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCC
Q 003309 728 GTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN-REG 806 (832)
Q Consensus 728 ~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~-~~g 806 (832)
..-.|+...+.+|-||||-|++.||.+||++||++|++||+.|.+||||||.|+..++..+++.|++.|+-|-+.. .++
T Consensus 571 ~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDm 650 (752)
T KOG0515|consen 571 YEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDM 650 (752)
T ss_pred HhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccc
Confidence 3345677788899999999999999999999999999999999999999999999999999999999998876554 567
Q ss_pred CcHHHHHHH--cCCCcHHHHHHHhh
Q 003309 807 KTSLELAVE--SNFADSEVLAILSD 829 (832)
Q Consensus 807 ~TpL~~A~~--~g~~d~~iv~lLl~ 829 (832)
.||..-+-. .|. ..+.++|-.
T Consensus 651 eTa~eKCee~eeGY--~~CsqyL~~ 673 (752)
T KOG0515|consen 651 ETAAEKCEEMEEGY--DQCSQYLYG 673 (752)
T ss_pred cchhhhcchhhhhH--HHHHHHHHH
Confidence 888776643 344 677777753
No 160
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.20 E-value=1.3e-10 Score=103.00 Aligned_cols=97 Identities=30% Similarity=0.640 Sum_probs=70.0
Q ss_pred eEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccc
Q 003309 294 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (832)
Q Consensus 294 ~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (832)
+++|||.++.......|++|||+|.+ +.|+||+....... ..+
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~-~~l~~~~~~~~~~~------------------------------------~~~ 44 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFN-STLLYYKSEKAKKD------------------------------------YKP 44 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEEC-CEEEEEeCCCcccc------------------------------------CCC
Confidence 57999999965345689999999994 66666665432100 112
Q ss_pred cccccccccccccCCcc--cCCcceEEEecCCc-eEEEEeCCHHHHHHHHHHHHHHH
Q 003309 374 RHTVNLLTSTIKVDADQ--SDLRFCFRIISPTK-NYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 374 ~~~i~l~~~~v~~~~~~--~~r~~~F~I~t~~r-t~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
...|.+..+.+....+. ....++|.|.++++ +|+|+|+|++|+..|+.+|+.++
T Consensus 45 ~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 45 KGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 23456666655433222 13579999999988 99999999999999999998875
No 161
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.20 E-value=5.3e-11 Score=141.80 Aligned_cols=87 Identities=39% Similarity=0.528 Sum_probs=60.4
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcH
Q 003309 742 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADS 821 (832)
Q Consensus 742 TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~ 821 (832)
+.|+.|+..|+.+++++|+.+|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~--~ 161 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF--R 161 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc--H
Confidence 34666666777777777777777777766667777777777777777777777777777777777777777777666 6
Q ss_pred HHHHHHhhC
Q 003309 822 EVLAILSDS 830 (832)
Q Consensus 822 ~iv~lLl~~ 830 (832)
+++++|+++
T Consensus 162 ~iv~~Ll~~ 170 (664)
T PTZ00322 162 EVVQLLSRH 170 (664)
T ss_pred HHHHHHHhC
Confidence 677777665
No 162
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.19 E-value=3.9e-11 Score=94.03 Aligned_cols=54 Identities=35% Similarity=0.529 Sum_probs=46.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHh
Q 003309 773 GLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILS 828 (832)
Q Consensus 773 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl 828 (832)
|+||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+ .+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~--~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGN--IDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT---HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccC--HHHHHHHC
Confidence 7899999999999999999999999999999999999999999999 99999996
No 163
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=4.1e-11 Score=128.45 Aligned_cols=86 Identities=22% Similarity=0.295 Sum_probs=81.9
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHH
Q 003309 745 HLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVL 824 (832)
Q Consensus 745 h~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv 824 (832)
.-|+..|.+++|+..+..--|+...+..|-||||-|+..||.+||++||+.|+++|..|.+||||||+|+.+++ ..++
T Consensus 555 LDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNn--v~~c 632 (752)
T KOG0515|consen 555 LDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNN--VPMC 632 (752)
T ss_pred HhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCc--hHHH
Confidence 44889999999999999888999999999999999999999999999999999999999999999999999988 9999
Q ss_pred HHHhhCCC
Q 003309 825 AILSDSHG 832 (832)
Q Consensus 825 ~lLl~~gg 832 (832)
+.|+++||
T Consensus 633 kqLVe~Ga 640 (752)
T KOG0515|consen 633 KQLVESGA 640 (752)
T ss_pred HHHHhccc
Confidence 99999886
No 164
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=99.16 E-value=4.2e-09 Score=103.41 Aligned_cols=191 Identities=14% Similarity=0.194 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHh--------------hCCCCCCCcc-ccCchHHHHHHHH
Q 003309 20 EESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETF--------------GGGHNDPISV-AFGGPVMTKFTIA 84 (832)
Q Consensus 20 E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f--------------~~~~~~~~~~-~~~~~~l~~f~~~ 84 (832)
=+..+..++|-++|++....+.+. +..-..+.-|-+.|..= +..-..+..+ ...|.+|.++++.
T Consensus 43 L~rAd~Tk~wTekil~qtEvlLQP-NP~aR~EEf~YEKLdrK~psR~nN~ElL~qyM~dAg~efGptTpYG~aLiKvaet 121 (375)
T KOG3725|consen 43 LQRADKTKDWTEKILSQTEVLLQP-NPTARMEEFFYEKLDRKKPSRQNNLELLSQYMTDAGEEFGPTTPYGSALIKVAET 121 (375)
T ss_pred HHHhhhhhHHHHHHHHhhheecCC-CcchhHHHHHHHHHhccCccccCCHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 346677889999999888877765 44333344444444211 1100011111 2346789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCC----------chhHHhHH
Q 003309 85 LREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT----------KTDVAAIL 154 (832)
Q Consensus 85 l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k----------~~~~~~e~ 154 (832)
.+.+......|+......++.||.+|+..|.+.+...||-....+.+.|++..|..+.+..- ....+..+
T Consensus 122 ekrlG~AeReli~taa~nfLtPlRnFlEGD~KTI~KERklLqnkRLDLDAcKsRLKKAKaae~q~~rN~~~s~~~~ie~a 201 (375)
T KOG3725|consen 122 EKRLGQAERELIGTAATNFLTPLRNFLEGDMKTIQKERKLLQNKRLDLDACKSRLKKAKAAELQTVRNSKTSGGFTIEQA 201 (375)
T ss_pred HHHhhHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhhcccChHHHHHHHHHhhhhhhhccccccccCcchHhHH
Confidence 99999999999999999999999999999999999999999999999999998854433110 11124567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003309 155 EEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (832)
Q Consensus 155 ~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l 212 (832)
+++|..+...|.+.+ +....|-+-....+...|.+|.+|+.+|.+||.|+|++|-++
T Consensus 202 EqelRvaQ~EFDrQa-EiTrLLLEGIsstH~nhLrCL~dFVeaQmtyYAQcyq~MlDL 258 (375)
T KOG3725|consen 202 EQELRVAQAEFDRQA-EITRLLLEGISSTHNNHLRCLRDFVEAQMTYYAQCYQLMLDL 258 (375)
T ss_pred HHHHHHHHHHHhHHH-HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999998887 777666666666667889999999999999999999988654
No 165
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.07 E-value=2.1e-10 Score=136.72 Aligned_cols=97 Identities=26% Similarity=0.373 Sum_probs=87.8
Q ss_pred cccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhC---
Q 003309 719 SSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR--- 795 (832)
Q Consensus 719 ~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~--- 795 (832)
......+|+..|++++..|..|.||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+.+
T Consensus 94 ~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~ 173 (664)
T PTZ00322 94 DAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQC 173 (664)
T ss_pred CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCc
Confidence 34445566778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----CCCCCCCCCCCCcHHHHHHH
Q 003309 796 ----GADPRAVNREGKTSLELAVE 815 (832)
Q Consensus 796 ----gad~~~~~~~g~TpL~~A~~ 815 (832)
|++++..+..|.+|+..+..
T Consensus 174 ~~~~ga~~~~~~~~g~~~~~~~~~ 197 (664)
T PTZ00322 174 HFELGANAKPDSFTGKPPSLEDSP 197 (664)
T ss_pred ccccCCCCCccccCCCCccchhhh
Confidence 99999999989888776543
No 166
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.05 E-value=1.4e-10 Score=131.98 Aligned_cols=94 Identities=30% Similarity=0.426 Sum_probs=85.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcc---------C--------------CCCCcHHHHHHHcCCHHHHHHHH
Q 003309 737 DLEGCTLLHLACDSADIGMLELLLQYGANINAT---------D--------------SRGLTPLHRCILRGKAMFAKLLL 793 (832)
Q Consensus 737 d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~---------d--------------~~g~TpLh~A~~~g~~~~v~~Ll 793 (832)
...|.||||+|+.+.+.++|++||+.||||+++ | ..|..||.+||..++.+|+++|+
T Consensus 181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl 260 (782)
T KOG3676|consen 181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL 260 (782)
T ss_pred hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence 447999999999999999999999999999863 1 24778999999999999999999
Q ss_pred hCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 794 TRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 794 ~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
++|||++++|.+|+|.||..+..-. .++..+++++||
T Consensus 261 ~~gAd~~aqDS~GNTVLH~lVi~~~--~~My~~~L~~ga 297 (782)
T KOG3676|consen 261 AHGADPNAQDSNGNTVLHMLVIHFV--TEMYDLALELGA 297 (782)
T ss_pred hcCCCCCccccCCChHHHHHHHHHH--HHHHHHHHhcCC
Confidence 9999999999999999999998855 889999999886
No 167
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.03 E-value=7e-10 Score=97.08 Aligned_cols=95 Identities=37% Similarity=0.715 Sum_probs=65.9
Q ss_pred EEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccccc
Q 003309 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 374 (832)
Q Consensus 295 k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (832)
++|||.++.......|++|||+|.++.+.+ |....... ...+.
T Consensus 1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~-~~~~~~~~------------------------------------~~~~~ 43 (96)
T cd00821 1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLY-YKKKSSKK------------------------------------SYKPK 43 (96)
T ss_pred CcchhhhhhChhhCCccEEEEEEECCEEEE-EECCCCCc------------------------------------CCCCc
Confidence 379999886443367999999999555544 44432200 01122
Q ss_pred ccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHH
Q 003309 375 HTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 375 ~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
..|.+..+.+.........+++|.|++.+ +.|+|+|+|++|+..|+.+|+.+
T Consensus 44 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 44 GSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred ceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhcC
Confidence 44666666665433333357999999988 99999999999999999999753
No 168
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.02 E-value=1.6e-09 Score=111.28 Aligned_cols=97 Identities=35% Similarity=0.501 Sum_probs=89.7
Q ss_pred CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC-----HHHHHHHHhCCC---CCCCCCCC
Q 003309 734 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK-----AMFAKLLLTRGA---DPRAVNRE 805 (832)
Q Consensus 734 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~-----~~~v~~Ll~~ga---d~~~~~~~ 805 (832)
...+..+.+++|.++..+...++.+|+..|++++.+|..|.||||+|+..++ .+++++|++.|+ +.+.+|..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~ 146 (235)
T COG0666 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED 146 (235)
T ss_pred ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence 3456678999999999999999999999999999999999999999999999 999999999999 66677999
Q ss_pred CCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 806 GKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 806 g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|.||||+|+..|+ .+++.+|++.|+
T Consensus 147 g~tpl~~A~~~~~--~~~~~~ll~~~~ 171 (235)
T COG0666 147 GNTPLHWAALNGD--ADIVELLLEAGA 171 (235)
T ss_pred CCchhHHHHHcCc--hHHHHHHHhcCC
Confidence 9999999999999 799999998764
No 169
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=99.00 E-value=1.6e-07 Score=96.06 Aligned_cols=197 Identities=22% Similarity=0.324 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHH-HHHH
Q 003309 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGT-YKEV 94 (832)
Q Consensus 16 i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~-~~~~ 94 (832)
.+..|.....++...++|.|.++.|.+++.....++..++++|.+|.....+.. +-.....|.....++.. ....
T Consensus 13 F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~lY~p~~~~~----~~~~~~~y~~~v~~l~~~~~~e 88 (224)
T cd07591 13 FEFEERRYRTMEKASTKLQKEAKGYLDSLRALTSSQARIAETISSFYGDAGDKD----GAMLSQEYKQAVEELDAETVKE 88 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc----HhHHHHHHHHHHHHHHHHHHHH
Confidence 466788888999999999999999999999999999999999998865433221 00123455555566543 2334
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcc--cCCchhHHhHHHHHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLR--KGTKTDVAAILEEELHSARSAFEQARFSL 172 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~--k~k~~~~~~e~~~~l~~~r~~f~~~sld~ 172 (832)
+...+...++.|+..|++. +++++..=++-+....+||.+..++.++. +++++.++..++.+|..++..|...--.+
T Consensus 89 l~~~~~~~V~~Pl~~~~~~-~~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~L 167 (224)
T cd07591 89 LDGPYRQTVLDPIGRFNSY-FPEINEAIKKRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQL 167 (224)
T ss_pred HHhHHHHHHHHHHHHHHHH-hhhHHHHHHHHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445788999999999876 88898888888889999999999988774 33456778889999999999999999999
Q ss_pred HHHHHhhhhhchhhHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 003309 173 VTALSNVEAKKRFEFLEAV-SGTMDAHLRYFKQGYELLHQMEPYINQ 218 (832)
Q Consensus 173 ~~~l~~~~~~~~~e~l~~l-~~~~~a~~~ff~~g~~~~~~l~~~~~~ 218 (832)
...|..+-... +.|+.++ -+|+..|.+||.+++..|.++..++..
T Consensus 168 k~ELP~l~~~r-~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~~ 213 (224)
T cd07591 168 KTELPQLVDLR-IPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLDA 213 (224)
T ss_pred HHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 99999887654 4566655 489999999999999999998888765
No 170
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.96 E-value=5.1e-09 Score=92.79 Aligned_cols=100 Identities=23% Similarity=0.317 Sum_probs=70.4
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccc
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (832)
.+++|-|.|-. ++..+.|||+|-+|-++|-...... ..-.
T Consensus 4 li~eG~L~K~~---rk~~~~R~ffLFnD~LvY~~~~~~~-------------------------------------~~~~ 43 (104)
T cd01218 4 LVGEGVLTKMC---RKKPKQRQFFLFNDILVYGNIVISK-------------------------------------KKYN 43 (104)
T ss_pred EEecCcEEEee---cCCCceEEEEEecCEEEEEEeecCC-------------------------------------ceee
Confidence 46899999985 4567889999997766652110000 0001
Q ss_pred ccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHHHc
Q 003309 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS 432 (832)
Q Consensus 373 ~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 432 (832)
....+++..+.|....+..+-+++|.|.++.|+|+++|+|++|..+||++|+.||...+.
T Consensus 44 ~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~kSf~v~A~s~~eK~eWl~~i~~ai~~~l~ 103 (104)
T cd01218 44 KQHILPLEGVQVESIEDDGIERNGWIIKTPTKSFAVYAATETEKREWMLHINKCVTDLLE 103 (104)
T ss_pred EeeEEEccceEEEecCCcccccceEEEecCCeEEEEEcCCHHHHHHHHHHHHHHHHHHhc
Confidence 113345555555433333455799999999999999999999999999999999988764
No 171
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.96 E-value=1.4e-09 Score=111.47 Aligned_cols=132 Identities=23% Similarity=0.332 Sum_probs=80.3
Q ss_pred CcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEec-CCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCC
Q 003309 290 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRK-QCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD 368 (832)
Q Consensus 290 ~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (832)
...++|+|||+||+.. .++|+.|||+|.++|.|.=|+. +.+. +
T Consensus 12 ~~~vvkEgWlhKrGE~-IknWRpRYF~l~~DG~~~Gyr~kP~~~-----------------------------------~ 55 (516)
T KOG0690|consen 12 QEDVVKEGWLHKRGEH-IKNWRPRYFLLFNDGTLLGYRSKPKEV-----------------------------------Q 55 (516)
T ss_pred hhhhHHhhhHhhcchh-hhcccceEEEEeeCCceEeeccCCccC-----------------------------------C
Confidence 3557899999999654 4589999999999887655544 3321 1
Q ss_pred ccccccccccccccccccCCcccCCcceEEEecCCc----eEEEEeCCHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCC
Q 003309 369 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK----NYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSP 444 (832)
Q Consensus 369 ~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~r----t~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~~~~~~~~~~~ 444 (832)
..+.+...+.+..|..- ..+..|++.|-|-.-+- ..+|.++|++++++|++|||.+.....+..... -.++|
T Consensus 56 ~~p~pLNnF~v~~cq~m--~~erPrPntFiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l~q~e~~~--tn~~p 131 (516)
T KOG0690|consen 56 PTPEPLNNFMVRDCQTM--KTERPRPNTFIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRLKQEELMD--TNGNP 131 (516)
T ss_pred CCcccccchhhhhhhhh--hccCCCCceEEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhhhhhhhcc--cCCCc
Confidence 11122222334445442 23345789999877653 367899999999999999997764443322111 12233
Q ss_pred CCCCCCCCCCCCCCCCC
Q 003309 445 MGSGHHRSASDSSSFES 461 (832)
Q Consensus 445 ~~~~~~~~~s~~~s~~~ 461 (832)
.+..+....++|..+.+
T Consensus 132 ~~~~d~~~~s~s~d~~~ 148 (516)
T KOG0690|consen 132 EGEMDVNMGSPSDDFGS 148 (516)
T ss_pred cccccccCCCCCccccc
Confidence 34444455555544443
No 172
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.96 E-value=5.7e-10 Score=128.34 Aligned_cols=173 Identities=19% Similarity=0.199 Sum_probs=121.1
Q ss_pred eehhhhcCchhhhHhhhhccccccccccch-------hhhhhhhHHHHHhhhhcc-------ccCCCCcccccccccCcc
Q 003309 654 IWEGVRTNDKKAVYRHIVNFEVDVNAVYEQ-------VSCISSLTLAKAMLLNEQ-------TSLERSSSSLTGNSSDRS 719 (832)
Q Consensus 654 L~~Av~~~d~~~v~~lL~~~gadvN~~~~~-------~~~~~~l~~~~~ll~~~~-------~~~~~~~~~l~~~~~~~~ 719 (832)
.+.-++.|....|+.+|+..|++-.+++-. ..++++..++++++..+. ...+..|++++...++..
T Consensus 827 ~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~ 906 (2131)
T KOG4369|consen 827 MLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQA 906 (2131)
T ss_pred eEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccH
Confidence 344455666666777777888765443221 245666677777666431 123456666666665555
Q ss_pred ccccccccCCCCCCCcC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 003309 720 SSGSLNLAGTSEGQTMD-DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 798 (832)
Q Consensus 720 ~~~~lll~~~~~~~~~~-d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 798 (832)
.. ++|+..|.++|.. ..+-+|+|-+|+..|..++|.+||.+.+++..+-..|.|||+-++..|.+++-++||..|||
T Consensus 907 at--~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad 984 (2131)
T KOG4369|consen 907 AT--LSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD 984 (2131)
T ss_pred HH--HHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccc
Confidence 44 4445555555543 23567888899989999999999988888888888889999988888999999999999988
Q ss_pred CCCCC--CCCCcHHHHHHHcCCCcHHHHHHHhhC
Q 003309 799 PRAVN--REGKTSLELAVESNFADSEVLAILSDS 830 (832)
Q Consensus 799 ~~~~~--~~g~TpL~~A~~~g~~d~~iv~lLl~~ 830 (832)
+|..- ....|+|-+++..|| ...|.+|+..
T Consensus 985 ~nasPvp~T~dtalti~a~kGh--~kfv~~lln~ 1016 (2131)
T KOG4369|consen 985 TNASPVPNTWDTALTIPANKGH--TKFVPKLLNG 1016 (2131)
T ss_pred cccCCCCCcCCccceeecCCCc--hhhhHHhhCC
Confidence 87642 344588888888888 7888888864
No 173
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=98.95 E-value=4e-07 Score=91.56 Aligned_cols=193 Identities=13% Similarity=0.167 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHH
Q 003309 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVL 95 (832)
Q Consensus 16 i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l 95 (832)
....|.....++...++|.|..+.|.+++.....++..|++++.++....... -..+..........+..+
T Consensus 14 Fe~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~lY~p~~~~---------~~~~~~v~e~~d~~~~~l 84 (211)
T cd07588 14 FDEHVNNFNKQQASANRLQKDLKNYLNSVRAMKQASKTLSETLKELYEPDWPG---------REHLASIFEQLDLLWNDL 84 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc---------HHHHHHHHHHHHHHHHHH
Confidence 45667778888889999999999999999988889999999998886532111 122233334444455567
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccC--CchhHHhHHHHHHHHHHHHHHHHHHHHH
Q 003309 96 RSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKG--TKTDVAAILEEELHSARSAFEQARFSLV 173 (832)
Q Consensus 96 ~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~--k~~~~~~e~~~~l~~~r~~f~~~sld~~ 173 (832)
...+...++.||..|+.. ++.++..=++=+....+||++..++.++..+ ++..++..++.+|..++..|...--.+.
T Consensus 85 ~~~l~~~Vl~Pl~~~~s~-f~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak~~Ye~lN~~L~ 163 (211)
T cd07588 85 EEKLSDQVLGPLTAYQSQ-FPEVKKRIAKRGRKLVDYDSARHNLEALKAKKKVDDQKLTKAEEELQQAKKVYEELNTELH 163 (211)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHhHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777889999999999876 7777777777777888999999999877533 4566788999999999999999999999
Q ss_pred HHHHhhhhhchhhHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003309 174 TALSNVEAKKRFEFLE-AVSGTMDAHLRYFKQGYELLHQMEPYINQV 219 (832)
Q Consensus 174 ~~l~~~~~~~~~e~l~-~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l 219 (832)
..|..+-... +.|+. .+-+++.+|..||.....+..+|..-++.+
T Consensus 164 ~ELP~L~~~r-i~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~~l 209 (211)
T cd07588 164 EELPALYDSR-IAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMDGL 209 (211)
T ss_pred HHhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9888876653 35555 455899999999999988888777666554
No 174
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=98.94 E-value=2.6e-09 Score=98.29 Aligned_cols=107 Identities=21% Similarity=0.436 Sum_probs=62.8
Q ss_pred EEEEEEecC------CC---CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCC
Q 003309 295 RQGYLSKRS------SN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG 365 (832)
Q Consensus 295 k~G~L~K~~------~~---~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (832)
|+|||..+- +. ..++|+.-|+||+ ++.|++|+.......+. ....
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~-g~~L~~~k~~~~~~~~~-------------------------~~~~ 55 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQ-GGQLYFYKDEKSPASST-------------------------PPDI 55 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEE-TTEEEEESSHHHHCCT--------------------------BS--
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEE-CCEEEEEccCcccccCC-------------------------cccc
Confidence 689997543 11 3468999999999 67888887732110000 0000
Q ss_pred CCCccccccccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 366 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 366 ~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
..-+...+...|.|..+......+...|+|+|.|.+++ ..|.|||.|++||.+||.+|+-+-
T Consensus 56 ~~~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 56 QSVENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp -SS--E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred cccccCcceeEEEecceEEEeCcccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 00011223345777766666666777899999999875 799999999999999999998763
No 175
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=98.94 E-value=8.3e-10 Score=118.58 Aligned_cols=119 Identities=26% Similarity=0.531 Sum_probs=100.3
Q ss_pred ccHHHHHHccCCCCccccCCCCCC-CeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHH
Q 003309 500 EKPIDVLRRVCGNDRCADCGAPEP-DWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA 578 (832)
Q Consensus 500 ~~~~~~~~~~~~n~~c~dc~~~~p-~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~ 578 (832)
|+.+..+.++|+|+.|++|....+ +|+++.-|.++|..|+|.-|.| ..-.+|+|+.|- .++..++..++..||..+
T Consensus 13 ek~iR~l~kLP~NrrC~nCnsl~~~t~~~~~~g~fv~~~~sg~ls~l-~~ahRvksiSmt--tft~qevs~lQshgNq~~ 89 (524)
T KOG0702|consen 13 EKEIRRLLKLPENRRCINCNSLVAATYVVYTVGSFVCTMCSGLLSGL-NPAHRVKSISMT--TFTDQEVSFLQSHGNQVC 89 (524)
T ss_pred HHHHHHHhcCCCCCceeeccccccceEEEeeccceeeeccchhhccC-CCccccceeeee--eccccchHHHhhcchhhh
Confidence 778889999999999999999988 9999999999999999999998 567899999998 688888999999999999
Q ss_pred HHHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCCCC
Q 003309 579 NSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKD 643 (832)
Q Consensus 579 n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~~~ 643 (832)
..||-........ .-|...++..+|+ |++.||+.++|..+...
T Consensus 90 k~i~fkl~D~q~S---------------------~vPD~rn~~~~ke-f~q~~y~~kr~~v~~n~ 132 (524)
T KOG0702|consen 90 KEIWFKLFDFQRS---------------------NVPDSRNPQKVKE-FQQEKYVKKRYYVPKNQ 132 (524)
T ss_pred hhhhhcchhhhhc---------------------cCCCcccchhhHH-HHhhhhccceeecCccc
Confidence 9999887765322 2333344445555 99999999999765543
No 176
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=98.93 E-value=2e-07 Score=97.09 Aligned_cols=136 Identities=23% Similarity=0.314 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHH
Q 003309 76 PVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILE 155 (832)
Q Consensus 76 ~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~ 155 (832)
.+|.+|+.++.+|...|..+...+...|..||+..+..++..+...||+.+..|..||.+..++.+.. +|+...++.
T Consensus 152 ~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~~~---~pekee~~r 228 (289)
T PF10455_consen 152 KALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNTDFKKANKARKKVENSRLQFDAARANLKNKA---KPEKEEQLR 228 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---CcccCHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999876632 233333455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003309 156 EELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (832)
Q Consensus 156 ~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~ 216 (832)
.++..+--.|-.+.=+-+..|..+-..- ++++.|..|+.+|..||+++.+.|.++-+.+
T Consensus 229 ~~lE~aEDeFv~aTeeAv~~Mk~vl~~~--e~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l 287 (289)
T PF10455_consen 229 VELEQAEDEFVSATEEAVEVMKEVLDNS--EPLRLLKELVKAQLEYHKKAAEALSELLKSL 287 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677777889999999999999987764 6799999999999999999999998875543
No 177
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.92 E-value=5.2e-09 Score=88.05 Aligned_cols=91 Identities=22% Similarity=0.344 Sum_probs=62.7
Q ss_pred eeEEEEEEecCCCC-CCCCceeEEEEeCCceEEEEecCCCC-CCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 293 TIRQGYLSKRSSNL-RGDWKRRFFVLDSRGMLYYYRKQCSK-SSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 293 ~~k~G~L~K~~~~~-~~~WkrRwfvL~~~~~l~yy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
+|+.|||.....++ +++=|+|||||. +..||||+..+++ +.+.
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt-~~~L~wykd~eeKE~kyi---------------------------------- 45 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLT-SESLSWYKDDEEKEKKYM---------------------------------- 45 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEe-cceeeeecccccccccce----------------------------------
Confidence 36789998876554 345799999999 5666666665443 3322
Q ss_pred ccccccccccccccccCCcc--cCCcceEEEecCC--------ceEEEEeCCHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQ--SDLRFCFRIISPT--------KNYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~--~~r~~~F~I~t~~--------rt~~lqA~s~~e~~~Wi~ai~~ 425 (832)
|.|....++. .++ ..++|||++..|+ +++.|.|+|.+|.+.|-..+-.
T Consensus 46 ------lpLdnLk~Rd-ve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasflr 103 (110)
T cd01256 46 ------LPLDGLKLRD-IEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFLR 103 (110)
T ss_pred ------eeccccEEEe-ecccccCCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHHHHh
Confidence 2333333331 222 4678999999865 6899999999999999876643
No 178
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.90 E-value=1.8e-09 Score=124.29 Aligned_cols=173 Identities=18% Similarity=0.202 Sum_probs=108.6
Q ss_pred eeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhccc------cCCCCcccccccccCcc
Q 003309 653 QIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQT------SLERSSSSLTGNSSDRS 719 (832)
Q Consensus 653 ~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~------~~~~~~~~l~~~~~~~~ 719 (832)
.|-.|++.|+ ++++.+|+..|+++...+..+ +..++..++..|+-+... ..+.+++.++|. ++.
T Consensus 760 ~LT~acaggh-~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs--ggr 836 (2131)
T KOG4369|consen 760 NLTSACAGGH-REEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS--GGR 836 (2131)
T ss_pred cccccccCcc-HHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC--CCc
Confidence 3444544444 445566668899888877765 334555555555542222 234455555443 344
Q ss_pred ccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCC--CCCcHHHHHHHcCCHHHHHHHHhCCC
Q 003309 720 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS--RGLTPLHRCILRGKAMFAKLLLTRGA 797 (832)
Q Consensus 720 ~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~--~g~TpLh~A~~~g~~~~v~~Ll~~ga 797 (832)
..++.+|+..|++-..++....|||.+|...|.+++|++||..|+.||.+.. .|-.||++|...||.+.++.||+.|.
T Consensus 837 ~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gs 916 (2131)
T KOG4369|consen 837 TRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGS 916 (2131)
T ss_pred chHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccc
Confidence 4444556677777777777778888888888888888888888877776543 46777777777777777777777776
Q ss_pred CCCCCC-CCCCcHHHHHHHcCCCcHHHHHHHhhC
Q 003309 798 DPRAVN-REGKTSLELAVESNFADSEVLAILSDS 830 (832)
Q Consensus 798 d~~~~~-~~g~TpL~~A~~~g~~d~~iv~lLl~~ 830 (832)
|+|..- -+.+|+|-+|+-.|. .++|.+||.+
T Consensus 917 diNaqIeTNrnTaltla~fqgr--~evv~lLLa~ 948 (2131)
T KOG4369|consen 917 DINAQIETNRNTALTLALFQGR--PEVVFLLLAA 948 (2131)
T ss_pred hhccccccccccceeeccccCc--chHHHHHHHH
Confidence 666432 233456666666655 5566666543
No 179
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.89 E-value=7.9e-09 Score=90.98 Aligned_cols=92 Identities=29% Similarity=0.525 Sum_probs=61.1
Q ss_pred EEEEEecCCCC---CCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccc
Q 003309 296 QGYLSKRSSNL---RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (832)
Q Consensus 296 ~G~L~K~~~~~---~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (832)
+|||.+++... ...|++|||+|.+ ..|+||+........ .
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~-~~l~~~~~~~~~~~~---------------------------------~--- 44 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFD-DGLLLYKSDDKKEIK---------------------------------P--- 44 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEEC-CEEEEEEcCCCCcCC---------------------------------C---
Confidence 69999886654 3689999999995 555555554321100 0
Q ss_pred ccccccccccccccCCcccCCcceEEEecC---CceEEEEeCCHHHHHHHHHHHHHH
Q 003309 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISP---TKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 373 ~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~---~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
..+.+....+....+...++++|.|+.. .+.++|+|+|++|++.|+.+|+.+
T Consensus 45 --~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 45 --GSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred --CEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 0122222223222222246799999988 789999999999999999999753
No 180
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.87 E-value=1.1e-06 Score=88.51 Aligned_cols=198 Identities=15% Similarity=0.146 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHH
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
.++...+.|+.+++.+.++......|+....++-.....|+.++..++... + +. +...|..|++.+..+.+++..
T Consensus 5 ~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E-~---~~-L~~~L~~lae~~~~i~d~~q~ 79 (211)
T cd07598 5 QTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTE-N---PS-LKQGLKNFAECLAALQDYRQA 79 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc-C---HH-HHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999999999998888888877777667788999998887754 1 21 346899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchh--HHhHHHHHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTD--VAAILEEELHSARSAFEQARFSL 172 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~--~~~e~~~~l~~~r~~f~~~sld~ 172 (832)
-..++...|++||..|..- ++.+++.+|..-.++..--..+.+...++-+.+++ .+.+++.+|..++..|...+-.+
T Consensus 80 qv~~l~~~v~epLk~Y~~l-~k~~k~~~K~~~~ar~~~~~~~~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~r~s~~l 158 (211)
T cd07598 80 EVERLEAKVVQPLALYGTI-CKHARDDLKNTFTARNKELKQLKQLEKLRQKNPSDRQIISQAESELQKASVDANRSTKEL 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876 57777666643333322222222222222212222 34578999999999999999999
Q ss_pred HHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 003309 173 VTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQ 218 (832)
Q Consensus 173 ~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~ 218 (832)
-..|..++..+--+|=..+.+||.++..|+.+..+++...-..+..
T Consensus 159 ~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~ 204 (211)
T cd07598 159 EEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQN 204 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999988777888888899999999999998887665444443
No 181
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.86 E-value=8.9e-09 Score=110.09 Aligned_cols=93 Identities=30% Similarity=0.404 Sum_probs=84.2
Q ss_pred cCCCCCCcH------HHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Q 003309 735 MDDLEGCTL------LHLACDSADIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGK 807 (832)
Q Consensus 735 ~~d~~g~Tp------Lh~Aa~~g~~~~v~~Ll~~gadvn~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~ 807 (832)
.+|.+|.|. ||..++.|+.+..-.||..||++|..+. .|.||||+|+..|+..-+++|+-+|||++..|.+|.
T Consensus 122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~Gm 201 (669)
T KOG0818|consen 122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGM 201 (669)
T ss_pred CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCC
Confidence 456666665 8999999999999999999999999876 599999999999999999999999999999999999
Q ss_pred cHHHHHHHcCCCcHHHHHHHhh
Q 003309 808 TSLELAVESNFADSEVLAILSD 829 (832)
Q Consensus 808 TpL~~A~~~g~~d~~iv~lLl~ 829 (832)
||+.+|...|| .++.+-|++
T Consensus 202 tP~~~AR~~gH--~~laeRl~e 221 (669)
T KOG0818|consen 202 TPVDYARQGGH--HELAERLVE 221 (669)
T ss_pred cHHHHHHhcCc--hHHHHHHHH
Confidence 99999999999 777777765
No 182
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=98.85 E-value=1.4e-06 Score=89.48 Aligned_cols=196 Identities=20% Similarity=0.212 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCC-cc-cc--Cc---hHHHHHHHHHHH
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPI-SV-AF--GG---PVMTKFTIALRE 87 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~-~~-~~--~~---~~l~~f~~~l~e 87 (832)
.+..++.++..++..+++|.|.++.|.++.......+..|+.++..+........ .+ .. +. ....++...+++
T Consensus 3 ~f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 82 (216)
T cd07599 3 QFEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLARLSRYVKALEE 82 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCcCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999987777778899999988754221111 11 00 11 234556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHh-cccC-----CchhHHhHHHHHHHHH
Q 003309 88 IGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLS-LRKG-----TKTDVAAILEEELHSA 161 (832)
Q Consensus 88 i~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~-~~k~-----k~~~~~~e~~~~l~~~ 161 (832)
+.......+..+...++.|+..+..- +++++..=++=+....+||.+..|+.+ +.++ ++..++..++.+|..+
T Consensus 83 l~~~~~~~l~~i~~~V~~P~~~~~~~-~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a 161 (216)
T cd07599 83 LKKELLEELEFFEERVILPAKELKKY-IKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEA 161 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHH
Confidence 65544444567889999999999985 788887777778888999999999888 6544 2455677889999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 003309 162 RSAFEQARFSLVTALSNVEAKKRFEFLEAVS-GTMDAHLRYFKQGYELLHQM 212 (832)
Q Consensus 162 r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~-~~~~a~~~ff~~g~~~~~~l 212 (832)
+..|...--.+...|..+-.... +|++++. .|+..|.+||...++.+..+
T Consensus 162 ~~~y~~lN~~Lk~eLP~l~~~~~-~~~~~~~~~~~~~ql~~~~~~~~~l~~~ 212 (216)
T cd07599 162 KEEYEALNELLKSELPKLLALAD-EFLPPLFKSFYYIQLNIYYTLHEYLQEF 212 (216)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999889888888877654 7888766 78899999999998877543
No 183
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=98.85 E-value=1.1e-06 Score=86.76 Aligned_cols=189 Identities=18% Similarity=0.149 Sum_probs=157.7
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHH
Q 003309 18 GLEESAEVLRE---RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 18 ~~E~~i~~l~~---~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
.+|.+|+.|+. .+..|++..+.|...+-.....+..|.+.|.+.+.-.... -+..|..||++++-+......
T Consensus 3 eL~akle~l~~~~~~y~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~~~-----a~~~f~~~~~a~r~~~k~g~~ 77 (203)
T cd00011 3 ELELQLELLRETKRKYESVLQLGRALTAHLYSLSQTQHALGDAFADLSQKDPEL-----AGEEFGYNAEAQKLLCKNGET 77 (203)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH-----HHHHHHHHHHHHHHHHHhHHH
Confidence 35566665554 6888999999999888888888899999998887632211 135689999999999998888
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCc------hhHHhHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTK------TDVAAILEEELHSARSAFEQA 168 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~------~~~~~e~~~~l~~~r~~f~~~ 168 (832)
|+.. -..|..-|..|+..-|..-...-++|+.++.+|++++.+...++..-. ..+.+.+...+..+|..|.+.
T Consensus 78 ll~~-l~~~~~~l~T~~~kai~DT~lTI~~ye~aR~EY~a~~l~~ke~~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~kL 156 (203)
T cd00011 78 LLGA-VNFFVSSINTLVTKAIEDTLLTVKQYEAARLEYDAYRLDLKELSLEPRDDTAGTRGRLRSAQATFQEHRDKFEKL 156 (203)
T ss_pred HHHH-HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhHHHHHHHHHHhcccCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 8754 456788899999999999999999999999999999999888865443 345567788999999999999
Q ss_pred HHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003309 169 RFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (832)
Q Consensus 169 sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l 212 (832)
..|.+.+|..+..++--.+-.+|..|..+...||......|+++
T Consensus 157 r~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~ 200 (203)
T cd00011 157 RGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQT 200 (203)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999998887888899999999999999998888764
No 184
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.83 E-value=9.7e-09 Score=103.10 Aligned_cols=91 Identities=26% Similarity=0.256 Sum_probs=83.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCC
Q 003309 740 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV-NREGKTSLELAVESNF 818 (832)
Q Consensus 740 g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-~~~g~TpL~~A~~~g~ 818 (832)
-..||.-+...|..+.+..||..--++|..|..|.+||.+|+..|+.++|++||+.|+|+|.. +..+.||||+|+..|+
T Consensus 12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn 91 (396)
T KOG1710|consen 12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN 91 (396)
T ss_pred hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence 467999999999999999999876679999999999999999999999999999999999975 4678999999999999
Q ss_pred CcHHHHHHHhhCCC
Q 003309 819 ADSEVLAILSDSHG 832 (832)
Q Consensus 819 ~d~~iv~lLl~~gg 832 (832)
.+|.++|+++|+
T Consensus 92 --~dvcrllldaGa 103 (396)
T KOG1710|consen 92 --QDVCRLLLDAGA 103 (396)
T ss_pred --chHHHHHHhccC
Confidence 889999999985
No 185
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=98.82 E-value=1.4e-06 Score=88.93 Aligned_cols=187 Identities=17% Similarity=0.186 Sum_probs=153.6
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHH
Q 003309 18 GLEESAEVLR---ERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 18 ~~E~~i~~l~---~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
+++.+|+.++ ..+..+++.++.|...+......+..|.+.|.+.+.....+ . .+..|..+|++++-+......
T Consensus 34 eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~---~-l~~~f~~~~~~~~~~~~~~~~ 109 (229)
T PF06456_consen 34 ELDAKLELLRDTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKSP---A-LGEEFSANGEAQRSLAKQGET 109 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-C---C-GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCH---H-HHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554 46888999999999988888888899999999887632111 1 346799999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCch------hHHhHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKT------DVAAILEEELHSARSAFEQA 168 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~------~~~~e~~~~l~~~r~~f~~~ 168 (832)
|+.. -..|+.-|..|+..-|...+..-|+|+.++.+||+++.+...++....| ...+.+...+..+|..|.+.
T Consensus 110 L~~~-l~~~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY~ay~~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~k~rf~kL 188 (229)
T PF06456_consen 110 LLKA-LKRFLSDLNTFRNKAIPDTLLTIKKYEDARFEYDAYRLWLKEMSDELDPDTAKQEPKFRVAQGNYQEAKERFDKL 188 (229)
T ss_dssp HHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSTSSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhcccchHHHHHHHHHHHHHHHHHH
Confidence 8865 4566779999999999999999999999999999999999888744322 34467778899999999999
Q ss_pred HHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 169 RFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELL 209 (832)
Q Consensus 169 sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~ 209 (832)
..|.+.+|..+..++--.+-.+|..|..+...||....+.|
T Consensus 189 r~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~~l 229 (229)
T PF06456_consen 189 RSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQAL 229 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhC
Confidence 99999999999999888888999999999999999887654
No 186
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.82 E-value=1.8e-09 Score=121.52 Aligned_cols=84 Identities=33% Similarity=0.478 Sum_probs=80.1
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL 810 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL 810 (832)
-+|..|..|+|+||+|+..|...++++||++|+|++.+|. .|+||||.|..+|+++|+-+||.+|+.+.++|.+|.+||
T Consensus 44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglspl 123 (1267)
T KOG0783|consen 44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPL 123 (1267)
T ss_pred hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHH
Confidence 3677899999999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred HHHHH
Q 003309 811 ELAVE 815 (832)
Q Consensus 811 ~~A~~ 815 (832)
+.-++
T Consensus 124 q~~~r 128 (1267)
T KOG0783|consen 124 QFLSR 128 (1267)
T ss_pred HHHhh
Confidence 98877
No 187
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=98.82 E-value=1.2e-06 Score=86.20 Aligned_cols=188 Identities=17% Similarity=0.174 Sum_probs=153.4
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHH
Q 003309 18 GLEESAEVLRE---RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 18 ~~E~~i~~l~~---~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
++|.+++.|+. .+..+++.++.|....-.....++.|.+.|...+.-..+. ...+..|++..+-+...-..
T Consensus 3 eLeaklE~L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p~l------~~af~~~aet~k~l~kng~~ 76 (201)
T cd07660 3 ELEAQIEVLRDTQRKYESVLRLARALASQFYQMLQTQKALGDAFADLSQKSPEL------QEEFTYNAETQKLLCKNGET 76 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH------HHHHHHHHHHHHHHHHhHHH
Confidence 45666665554 6889999999999988888888899999998887632221 34688889988888887666
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccC----CchhHHhHHHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKG----TKTDVAAILEEELHSARSAFEQARF 170 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~----k~~~~~~e~~~~l~~~r~~f~~~sl 170 (832)
|. ..-+.|+.-|..|+..-|..-...-++|+.++-+||+++.....+.-. .+..+.+.+..++..+|..|.+..-
T Consensus 77 Ll-~al~~f~s~l~T~~~kai~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~~~~~l~r~~~~q~~~~~~k~kf~KLR~ 155 (201)
T cd07660 77 LL-GALNFFVSSLNTLVNKTMEDTLMTVKQYESARIEYDAYRNDLEALNLGPRDAATSARLEEAQRRFQAHKDKYEKLRN 155 (201)
T ss_pred HH-HHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhHhHHHHhccHHHcccCCCccchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 66 455678888999999999999999999999999999998766554322 2344556778889999999999999
Q ss_pred HHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003309 171 SLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (832)
Q Consensus 171 d~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l 212 (832)
|.+.+|..+..++--.+..+|..|.+|...||..+.+.+++.
T Consensus 156 DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L~~~ 197 (201)
T cd07660 156 DVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQKQLEQT 197 (201)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999998887888999999999999999988887653
No 188
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=98.81 E-value=1.1e-06 Score=90.30 Aligned_cols=190 Identities=16% Similarity=0.140 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC---CCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG---HNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQV 99 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~---~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~ 99 (832)
++.++=.+++|++.+++|..++.....+...|.++|..++.. ... ...+|.+|.+++..++.|+..+..+...+
T Consensus 5 ~~~~~P~~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~---s~~lG~~L~~~s~~~r~i~~~~~~~~~~~ 81 (219)
T PF08397_consen 5 MEDFNPAWENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASNSRG---SKELGDALMQISEVHRRIENELEEVFKAF 81 (219)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc---cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667889999999999999888888889999999998741 112 23467899999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHH----HHhcccCCc---h-h--HHhHHHHHHHHHHHHHHHHH
Q 003309 100 EHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREK----FLSLRKGTK---T-D--VAAILEEELHSARSAFEQAR 169 (832)
Q Consensus 100 ~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k----~~~~~k~k~---~-~--~~~e~~~~l~~~r~~f~~~s 169 (832)
...++.||++.++.|.+.+....|.|++.....-..+.| ..++.|+.. + . .+.+.-.++......++. .
T Consensus 82 ~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele~-~ 160 (219)
T PF08397_consen 82 HSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRKGKDDQKYELKEALQDVTERQSELEE-F 160 (219)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHHH-H
Confidence 999999999999999999998888888876666555555 344444432 1 1 223443445555555544 3
Q ss_pred HHHHHHHHhhhhhchhh-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003309 170 FSLVTALSNVEAKKRFE-FLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (832)
Q Consensus 170 ld~~~~l~~~~~~~~~e-~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~ 216 (832)
.....+-..++++++|- |++.++.+++....|+.++.+++++.-+-+
T Consensus 161 ~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w 208 (219)
T PF08397_consen 161 EKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDW 208 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34445566678888887 589999999999999999998886644433
No 189
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=98.80 E-value=6.8e-07 Score=98.40 Aligned_cols=106 Identities=22% Similarity=0.403 Sum_probs=75.1
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
...+|+|-|.|.+.+ +.+-..||++|-++-++|..... ...++ +
T Consensus 270 reLiKEG~l~Kis~k-~~~~qeRylfLFNd~~lyc~~r~--~~~~~---------------------------------k 313 (623)
T KOG4424|consen 270 RELIKEGQLQKISAK-NGTTQERYLFLFNDILLYCKPRK--RLPGS---------------------------------K 313 (623)
T ss_pred HHHhhccceeeeecc-CCCcceeEEEEehhHHHhhhhhh--hcccc---------------------------------e
Confidence 456899999999765 56789999999976666653332 11111 1
Q ss_pred ccccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
...+..+.+..+.++ ..+..++++.|.|..+.|...|||-|+++..+||.+|+.+|....+.
T Consensus 314 ~~~r~~~s~~~~~v~-~~~~~~~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~ 375 (623)
T KOG4424|consen 314 YEVRARCSISHMQVQ-EDDNEELPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAIDKHKQC 375 (623)
T ss_pred eccceeeccCcchhc-ccccccCCceEEEecccceEEeecCchhhHHHHHHHHHHHHHHHHHH
Confidence 111122333334443 23445678999999999999999999999999999999999877765
No 190
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=98.79 E-value=3.6e-06 Score=83.84 Aligned_cols=192 Identities=13% Similarity=0.131 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHH-HHHHHHHHH
Q 003309 17 QGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALR-EIGTYKEVL 95 (832)
Q Consensus 17 ~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~-ei~~~~~~l 95 (832)
...|.....+++-.++|.|.++.|.++++-...++..|++++.+|....-..-+. ....+.... -+.++...+
T Consensus 15 e~~errf~~lE~~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~e~Y~p~~~g~~~------~~~~~~~~d~~~~dl~~~l 88 (211)
T cd07611 15 EEYVQNFKRQETEGTRLQRELRAYLAAIKGMQEASKKLTESLHEVYEPDWYGRDD------VKTIGEKCDLLWEDFHQKL 88 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccch------HHHHHhhHHHHHHHHHHHH
Confidence 4456667778888889999999999998888888999999999987532111000 111122221 222344444
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcc--cCCchhHHhHHHHHHHHHHHHHHHHHHHHH
Q 003309 96 RSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLR--KGTKTDVAAILEEELHSARSAFEQARFSLV 173 (832)
Q Consensus 96 ~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~--k~k~~~~~~e~~~~l~~~r~~f~~~sld~~ 173 (832)
++ .++.|++.|+.. ++.+++.-++=+....+||++..++.++. +.++..++..++++|..++..|...--.+.
T Consensus 89 v~----~vl~P~~~~~s~-f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk 163 (211)
T cd07611 89 VD----GALLTLDTYLGQ-FPDIKNRIAKRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQ 163 (211)
T ss_pred HH----HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 379999999876 78887777777778889999999998773 455667788999999999999988888888
Q ss_pred HHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003309 174 TALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQV 219 (832)
Q Consensus 174 ~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l 219 (832)
..|..+-..+=-=+.-.+=+++..|..||.....+..+|..-|+.+
T Consensus 164 ~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~~l 209 (211)
T cd07611 164 EELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMTKL 209 (211)
T ss_pred HHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8887765543222444556888999999988877777766666544
No 191
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=98.79 E-value=3.2e-06 Score=84.21 Aligned_cols=192 Identities=14% Similarity=0.154 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHH
Q 003309 17 QGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLR 96 (832)
Q Consensus 17 ~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~ 96 (832)
...|.....+++-.++|.|.++.|.++++-...++..|++++.+|.....+..+ -+..+.+...+ ....+.
T Consensus 15 e~~e~rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~Y~~~~~~~~------~~~~v~e~~d~---~~~~~~ 85 (211)
T cd07612 15 EQCAMNLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDIYEPDWDGHE------DLGAIVEGEDL---LWNDYE 85 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCccc------HHHHHHhccHH---HHHHHH
Confidence 344556666777788888888888888777777889999999998654322211 12222222222 555666
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcc--cCCchhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003309 97 SQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLR--KGTKTDVAAILEEELHSARSAFEQARFSLVT 174 (832)
Q Consensus 97 ~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~--k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~ 174 (832)
..+..+++.||..|+.. +..+++.-++=+....+||++..++..+. ++++..++..++++|..++..|...--++..
T Consensus 86 ~~~~~~vL~pi~~~~s~-f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~L~~ 164 (211)
T cd07612 86 AKLHDQALRTMESYMAQ-FPDVKERVAKRGRKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINRELRE 164 (211)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778899999999876 78888777777778889999999987773 4556777889999999999999999988888
Q ss_pred HHHhhhhhchhhHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003309 175 ALSNVEAKKRFEFL-EAVSGTMDAHLRYFKQGYELLHQMEPYINQV 219 (832)
Q Consensus 175 ~l~~~~~~~~~e~l-~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l 219 (832)
.|..+-..+ +.++ -.+-+++..|..||.....++.+|..-++.+
T Consensus 165 ELP~L~~~R-i~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~~l 209 (211)
T cd07612 165 ELPILYDSR-IGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMKKL 209 (211)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888876553 3444 4555889999999999888887777666554
No 192
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.73 E-value=9.7e-09 Score=109.41 Aligned_cols=93 Identities=24% Similarity=0.346 Sum_probs=87.2
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHH
Q 003309 736 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR-GADPRAVNREGKTSLELAV 814 (832)
Q Consensus 736 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~~~~g~TpL~~A~ 814 (832)
++.++..++++|+..|.+..++.+.-.|.|++..|.+.+|+||+|+..|+++++++||+. +.+++.+|..|+|||+-|.
T Consensus 502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~ 581 (622)
T KOG0506|consen 502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK 581 (622)
T ss_pred ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence 345678889999999999999999999999999999999999999999999999999986 8999999999999999999
Q ss_pred HcCCCcHHHHHHHhhC
Q 003309 815 ESNFADSEVLAILSDS 830 (832)
Q Consensus 815 ~~g~~d~~iv~lLl~~ 830 (832)
..+| .+++++|.+.
T Consensus 582 ~F~h--~~v~k~L~~~ 595 (622)
T KOG0506|consen 582 HFKH--KEVVKLLEEA 595 (622)
T ss_pred hcCc--HHHHHHHHHH
Confidence 9999 9999999764
No 193
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=98.65 E-value=1.1e-05 Score=78.43 Aligned_cols=186 Identities=17% Similarity=0.155 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (832)
Q Consensus 21 ~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~ 100 (832)
++++..+..++.++...+.+....-.....+++|.++|..++.-...+ .....+..|++..+.+...-..|+. .-
T Consensus 9 e~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~~p----~l~eeF~~~ae~hR~l~k~G~~ll~-ai 83 (215)
T cd07659 9 EELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREPQP----AASEAFTKFGEAHRSIEKFGIELLK-TL 83 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCh----hHHHHHHHhHHHHHHHHHhHHHHHH-Hh
Confidence 344555567889999999998887777777889999998887632111 1235689999999999998888874 45
Q ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccc--------CCchhHHhHHHHHH-------HHHHHHH
Q 003309 101 HMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRK--------GTKTDVAAILEEEL-------HSARSAF 165 (832)
Q Consensus 101 ~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k--------~k~~~~~~e~~~~l-------~~~r~~f 165 (832)
.-|+.-|..+++.-|..-+..-|+|+.++-.||+...+...+.- .-+.-.+.....+. ..+|..|
T Consensus 84 ~~~~s~l~T~l~KaipDT~lTikkY~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf 163 (215)
T cd07659 84 KPMLSDLGTYLNKAIPDTKLTIKKYADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARARF 163 (215)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999877631 10111222222333 7899999
Q ss_pred HHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 166 EQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (832)
Q Consensus 166 ~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 211 (832)
.+.+-|...+|..+..++--.+..+|..|+.|...||..+++.+.+
T Consensus 164 ~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~~ 209 (215)
T cd07659 164 AKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLKE 209 (215)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999988889999999999999999999988753
No 194
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.63 E-value=1.9e-08 Score=114.83 Aligned_cols=95 Identities=26% Similarity=0.462 Sum_probs=69.9
Q ss_pred ceeEEEEEEecCCCCCCCCceeEEEEeCCc-eEEEEecCCCC-CCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRG-MLYYYRKQCSK-SSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~-~l~yy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
..+.+|||+||+ ...|.||.|||||+.+. .++||+...+. |.|
T Consensus 1633 Nr~~eG~LyKrG-A~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG---------------------------------- 1677 (1732)
T KOG1090|consen 1633 NRIPEGYLYKRG-AKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKG---------------------------------- 1677 (1732)
T ss_pred ccCcccchhhcc-hhhcccccceeEecCCccceeeecccccccccc----------------------------------
Confidence 345699999994 45678999999999754 68888776542 222
Q ss_pred cccccccccccccc-c-ccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTST-I-KVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 370 ~~~~~~~i~l~~~~-v-~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
.|+|.... | -..+...|++--|++.|.+|+|.|+|.+-.+.++|++.||.++
T Consensus 1678 ------~IdLaevesv~~~~~k~vdekgffdlktt~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1678 ------CIDLAEVESVALIGPKTVDEKGFFDLKTTNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred ------hhhhhhhhhhcccCccccCccceeeeehhhHHHHHHhccchHHHHHHHHHHHhh
Confidence 23332111 1 0123455666679999999999999999999999999999876
No 195
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.63 E-value=2.4e-07 Score=83.13 Aligned_cols=105 Identities=16% Similarity=0.252 Sum_probs=70.1
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCC-CCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
-+++|-|.|-+.. ++.++.|+|+|-++-++|..++... ..+|.. ...-
T Consensus 4 lI~EG~L~ki~~~-~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~------------------------------~~~y 52 (112)
T cd01261 4 FIMEGTLTRVGPS-KKAKHERHVFLFDGLMVLCKSNHGQPRLPGAS------------------------------SAEY 52 (112)
T ss_pred ccccCcEEEEecc-cCCcceEEEEEecCeEEEEEeccCcccccccc------------------------------cceE
Confidence 4689999988543 3578999999996666665544321 111110 0011
Q ss_pred cccccccccccccccCCcccCCcceEEEecC-CceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~-~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
...+.+++....|.-.++..+-++.|.|++. ++++.|+|.|++|..+||++|..+|.
T Consensus 53 ~~k~~~~l~~~~V~d~~d~~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 53 RLKEKFFMRKVDINDKPDSSEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEEEEeeeeeEEEEcCCCcccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 2234455555555433444445799999985 78999999999999999999998874
No 196
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.59 E-value=4.8e-08 Score=83.06 Aligned_cols=35 Identities=9% Similarity=0.270 Sum_probs=30.5
Q ss_pred CcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 393 LRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 393 r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
-+|-|..+-.+-+..|..+.|.|+.-||+||=.|-
T Consensus 76 g~~ff~avkegd~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 76 GRHFFNAVKEGDELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred chhhhheeccCcEEEEeccchHHHHHHHHHHHHHc
Confidence 36778888888999999999999999999987653
No 197
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.54 E-value=1.9e-07 Score=81.58 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=27.9
Q ss_pred cceEEEecCC------c-eEEEEeCCHHHHHHHHHHHHHHH
Q 003309 394 RFCFRIISPT------K-NYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 394 ~~~F~I~t~~------r-t~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
.|||-|..+. + .-+||||+++.+..||.||+-+.
T Consensus 68 d~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 68 DYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred CceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 5888887653 2 36899999999999999998665
No 198
>PF13606 Ank_3: Ankyrin repeat
Probab=98.50 E-value=1.4e-07 Score=63.68 Aligned_cols=28 Identities=43% Similarity=0.718 Sum_probs=16.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 003309 740 GCTLLHLACDSADIGMLELLLQYGANIN 767 (832)
Q Consensus 740 g~TpLh~Aa~~g~~~~v~~Ll~~gadvn 767 (832)
|+||||+||..|+.+++++||++|+|||
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 5555555555555555555555555554
No 199
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=98.49 E-value=5.2e-05 Score=76.92 Aligned_cols=189 Identities=16% Similarity=0.130 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 29 RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLL 108 (832)
Q Consensus 29 ~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~ 108 (832)
.+++++..+++|..++.-+..+...|.++|...+..-.+......+|.+|.++...++.+++....+...+...++.||+
T Consensus 21 ~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe 100 (223)
T cd07605 21 VLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELASQSRGSQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPLE 100 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57889999999998888888888999999988864211111233567889999999999999999998899999999999
Q ss_pred HHhHhhhHHHHHHHHHHHHHhH----HHHHHHHHHHhcccC-------CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 109 QYVNIDLHEVKEARKCFDKASL----LYDQAREKFLSLRKG-------TKTDVAAILEEELHSARSAFEQARFSLVTALS 177 (832)
Q Consensus 109 ~f~~~di~~~ke~rk~fek~~~----~yd~al~k~~~~~k~-------k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~ 177 (832)
+=++.|.+.+....|+|.+... +++.+.....++.|+ +.++.+.++-+++-.....++..--+-+...-
T Consensus 101 ~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al 180 (223)
T cd07605 101 KKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQGLRDAL 180 (223)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887777665 455444444444333 24444455444555555544444434343333
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 003309 178 NVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYIN 217 (832)
Q Consensus 178 ~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~ 217 (832)
.-+.++---||+.++.+++....||..+..++.+.-|..+
T Consensus 181 ~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~~l~~w~ 220 (223)
T cd07605 181 LEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLSTRLPLWQ 220 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 3333333467899999999999999999999877555444
No 200
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.48 E-value=5e-05 Score=75.54 Aligned_cols=176 Identities=18% Similarity=0.242 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHH
Q 003309 19 LEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQ 98 (832)
Q Consensus 19 ~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~ 98 (832)
+++.++.|+..|.++-|....++.........-..|...+..++....+. ++.+|..|+..+..+......+...
T Consensus 9 i~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~-----L~~~l~~~~~~~~~~s~~~~~l~~~ 83 (185)
T cd07628 9 IREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGE-----ITEPFKIFSESLSQFSTSLRVLNKY 83 (185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh-----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444433333334457888888887754331 4578999999999999999999989
Q ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003309 99 VEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSN 178 (832)
Q Consensus 99 ~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~ 178 (832)
+...|..||..++.- +.-+|..-|.=+..+.+|+.+.+ |+ ...++..++..|+...-+...-+..
T Consensus 84 ~~~~f~~~Lkd~~~y-~~s~k~~lk~R~~kq~d~e~l~e-~l-------------l~~~ve~a~~~~e~f~~~~~~E~~r 148 (185)
T cd07628 84 TDENYLTSLKDLLHY-ILSLKNLIKLRDQKQLDYEELSD-YL-------------LTDEVENAKETSDAFNKEVLKEYPN 148 (185)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHH-HH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 67777777777788888876543 33 3446778888998888888889999
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003309 179 VEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (832)
Q Consensus 179 ~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~ 214 (832)
.+..+..++-+.|.+|...|..||+++.+.++.+.|
T Consensus 149 F~~~k~~elk~~l~~~a~~qi~~y~~~~~~W~~~~~ 184 (185)
T cd07628 149 FERIKKQEIKDSLGALADGHIDFYQGLVEDWEKVEP 184 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999888877653
No 201
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.47 E-value=3.5e-05 Score=77.84 Aligned_cols=184 Identities=18% Similarity=0.255 Sum_probs=137.5
Q ss_pred ChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHH
Q 003309 9 SPMF---RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIAL 85 (832)
Q Consensus 9 SP~F---Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l 85 (832)
+|.| +..+..|++.+..+++....++|.-+.+... ...|..++..++....+ ++.+|..|+.+.
T Consensus 13 d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~-------~~efg~~~~~ls~~E~~------L~~~L~~~~~~~ 79 (200)
T cd07624 13 SPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDE-------LKEYSPIFQLWSASETE------LAPLLEGVSSAV 79 (200)
T ss_pred CccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcchh------HHHHHHHHHHHH
Confidence 4555 3445556666666666666666555554443 44688888888765332 357899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHH
Q 003309 86 REIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAF 165 (832)
Q Consensus 86 ~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f 165 (832)
..+......+.......|..||..++.- +.-+|..-+.=+..+.+|+.+.+-... ++ .+...++.+++..|
T Consensus 80 ~~~~~~~~~l~~~~~~~f~e~Lkey~~y-~~svk~~l~~R~~~q~~~e~~~e~L~~-k~-------~~l~~ev~~a~~~~ 150 (200)
T cd07624 80 ERCTAALEVLLSDHEFVFLPPLREYLLY-SDAVKDVLKRRDQFQIEYELSVEELNK-KR-------LELLKEVEKLQDKL 150 (200)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHHHH
Confidence 9999999999988889999999998664 555555555555678888765554222 21 11566788899999
Q ss_pred HHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003309 166 EQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (832)
Q Consensus 166 ~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~ 214 (832)
+.+.-++..-+..++..+..++-..|.+|...|..||+++.+.++.+-|
T Consensus 151 e~~~~~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~~p 199 (200)
T cd07624 151 ECANADLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAWEEVLP 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999899999999999999999999999999999999988877654
No 202
>PF13606 Ank_3: Ankyrin repeat
Probab=98.44 E-value=2.4e-07 Score=62.47 Aligned_cols=30 Identities=43% Similarity=0.575 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 003309 772 RGLTPLHRCILRGKAMFAKLLLTRGADPRA 801 (832)
Q Consensus 772 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 801 (832)
.|+||||+|+..|+.++|++||++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 489999999999999999999999999874
No 203
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.44 E-value=8.3e-05 Score=76.42 Aligned_cols=193 Identities=20% Similarity=0.198 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHH
Q 003309 12 FRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTY 91 (832)
Q Consensus 12 FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~ 91 (832)
+|..|..+|..+..+.+.+..++|..+.+... ...|..+|..++....... .-++..+.+|+..+..+...
T Consensus 9 ~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~-------~~elg~~~~~Ls~~e~~~~--~~l~~~~~~~~~~~~~~~~~ 79 (218)
T cd07596 9 AKDYILKLEEQLKKLSKQAQRLVKRRRELGSA-------LGEFGKALIKLAKCEEEVG--GELGEALSKLGKAAEELSSL 79 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhccccc--hhhHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666665555544 4468888888876432211 12456899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHh-------cccCC--chh-------HHhHHH
Q 003309 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLS-------LRKGT--KTD-------VAAILE 155 (832)
Q Consensus 92 ~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~-------~~k~k--~~~-------~~~e~~ 155 (832)
...+.......+..||..++.- +..+++.=+.=+....+|+.+.....+ +.... .+. .+.+++
T Consensus 80 ~~~~~~~~~~~~~e~L~~y~~~-~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e 158 (218)
T cd07596 80 SEAQANQELVKLLEPLKEYLRY-CQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAE 158 (218)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999754 555665555544455555444333322 22111 112 234566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003309 156 EELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (832)
Q Consensus 156 ~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~ 214 (832)
.++..++..|...+-.....+..++..+..+|-..+..|+..|..|+++..+.++.+.|
T Consensus 159 ~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~~ 217 (218)
T cd07596 159 SALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLLP 217 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 67778888888888888888888988888899999999999999999999999887643
No 204
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.43 E-value=1.5e-06 Score=76.77 Aligned_cols=91 Identities=23% Similarity=0.383 Sum_probs=61.6
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..++++|++.|+.+ .. +++|||+|.+...|+|.+.....
T Consensus 11 e~Il~~g~v~K~kg-l~--~kkR~liLTd~PrL~Yvdp~~~~-------------------------------------- 49 (104)
T PF14593_consen 11 ELILKQGYVKKRKG-LF--AKKRQLILTDGPRLFYVDPKKMV-------------------------------------- 49 (104)
T ss_dssp --EEEEEEEEEEET-TE--EEEEEEEEETTTEEEEEETTTTE--------------------------------------
T ss_pred CeEEEEEEEEEeec-eE--EEEEEEEEccCCEEEEEECCCCe--------------------------------------
Confidence 56789999999944 33 89999999976699988765331
Q ss_pred cccccccccccc-ccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTS-TIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 371 ~~~~~~i~l~~~-~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
..+.|.+..+ .+.. .+ .-.|.|.||+|+|+|.. .+.+...|+++|+.++...
T Consensus 50 --~KGeI~~~~~l~v~~--k~---~~~F~I~tp~RtY~l~d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 50 --LKGEIPWSKELSVEV--KS---FKTFFIHTPKRTYYLED-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp --EEEEE--STT-EEEE--CS---SSEEEEEETTEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred --ECcEEecCCceEEEE--cc---CCEEEEECCCcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence 1234554422 2221 11 23699999999999998 5567889999999988654
No 205
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.43 E-value=3.1e-07 Score=63.75 Aligned_cols=31 Identities=45% Similarity=0.642 Sum_probs=17.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCccC
Q 003309 740 GCTLLHLACDSADIGMLELLLQYGANINATD 770 (832)
Q Consensus 740 g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d 770 (832)
|.||||+||..|+.+++++||++|++++.+|
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 5555555555555555555555555555544
No 206
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=98.40 E-value=0.00011 Score=76.58 Aligned_cols=189 Identities=19% Similarity=0.265 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (832)
Q Consensus 21 ~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~ 100 (832)
+.++.|+..|+++.+.+..++....+...+...|..++..++....+ ..++..|.+|++....+......+..+..
T Consensus 31 ~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~----~~l~~~l~~l~~~~~~~~~~~~~~a~~~~ 106 (236)
T PF09325_consen 31 DYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEE----KSLSEALSQLAEAFEKISELLEEQANQEE 106 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34455555555555555555554444444455688888888765322 12357899999999999999999988889
Q ss_pred HHHHHHHHHHhHhhhHHHHHH-------HHHHHHHhHHHHHHHHHHHhcccC--CchhHH-------hHHHHHHHHHHHH
Q 003309 101 HMLNDRLLQYVNIDLHEVKEA-------RKCFDKASLLYDQAREKFLSLRKG--TKTDVA-------AILEEELHSARSA 164 (832)
Q Consensus 101 ~~~~~pL~~f~~~di~~~ke~-------rk~fek~~~~yd~al~k~~~~~k~--k~~~~~-------~e~~~~l~~~r~~ 164 (832)
..|..||..++.- +..+|+. ...|+.....++....++.++... ..++++ .+++..+..++..
T Consensus 107 ~~l~~~L~ey~~~-~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~ 185 (236)
T PF09325_consen 107 ETLGEPLREYLRY-IESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDE 185 (236)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998554 4444433 233444444555444444444333 123333 3445556677778
Q ss_pred HHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003309 165 FEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (832)
Q Consensus 165 f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~ 214 (832)
|...+-..-..+..++..+..+|-..|..|+..|..|+++..+.|+.+-|
T Consensus 186 ~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~ 235 (236)
T PF09325_consen 186 FEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLP 235 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 88888777888888888888899999999999999999999999887644
No 207
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.37 E-value=2.7e-06 Score=74.35 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=34.7
Q ss_pred CcccCCcceEEEecCC--ceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 388 ADQSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 388 ~~~~~r~~~F~I~t~~--rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
.+..|.++-|.|.... ++.+|-|+|+.|.+.|+.+|..-|
T Consensus 69 a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 69 ADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred cCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence 4566889999998865 899999999999999999997655
No 208
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.36 E-value=5.4e-07 Score=62.52 Aligned_cols=33 Identities=45% Similarity=0.609 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 003309 772 RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNR 804 (832)
Q Consensus 772 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~ 804 (832)
+|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 489999999999999999999999999998873
No 209
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.36 E-value=7.9e-07 Score=97.06 Aligned_cols=84 Identities=32% Similarity=0.404 Sum_probs=56.1
Q ss_pred cHHHHHHHcCCHHHHHHHH--HcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCC
Q 003309 742 TLLHLACDSADIGMLELLL--QYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFA 819 (832)
Q Consensus 742 TpLh~Aa~~g~~~~v~~Ll--~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~ 819 (832)
-|||+++.....+-.+.++ +.+..++..|..|+||||+|+..|+.+.++.|+.+||++..+|++|++|||-|+..|+
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~- 100 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN- 100 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC-
Confidence 3577777666654443322 2244567777777777777777777777777777777777777777777777777776
Q ss_pred cHHHHHHH
Q 003309 820 DSEVLAIL 827 (832)
Q Consensus 820 d~~iv~lL 827 (832)
.+++..+
T Consensus 101 -~q~i~~v 107 (560)
T KOG0522|consen 101 -EQIITEV 107 (560)
T ss_pred -HHHHHHH
Confidence 4444433
No 210
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=5.4e-05 Score=82.40 Aligned_cols=190 Identities=15% Similarity=0.167 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~ 101 (832)
.+..++.--++|.|..+.|+.+..-...++..|++++.++....... ...+....+ ....++..+...+..
T Consensus 38 ~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p~~~g------~~~l~~v~~---~~d~l~~d~~~~l~d 108 (460)
T KOG3771|consen 38 NFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEPDWPG------RDYLQAVAD---NDDLLWKDLDQKLVD 108 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc------HHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33444445567777777777776666666788999998775531111 111222222 223355667778889
Q ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccC--CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 102 MLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKG--TKTDVAAILEEELHSARSAFEQARFSLVTALSNV 179 (832)
Q Consensus 102 ~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~--k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~ 179 (832)
.++.||++|+.. +..++..-++=.....|||+++.+|.++.++ ++..++..++.+|..+++.|+..--++...|-.+
T Consensus 109 ~vl~pl~~~~~~-fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~kd~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L 187 (460)
T KOG3771|consen 109 QVLLPLDTYLGQ-FPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKKDEAKLAKAEEELEKAQQVFEELNNELLEELPAL 187 (460)
T ss_pred hhhhhHHHhhhh-chhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876 4555555555555566899999888766433 3444456688899999999999988888888876
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003309 180 EAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLT 221 (832)
Q Consensus 180 ~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~ 221 (832)
=..+=-=|+-.+-.++..|..||..+..+...|..-+..|.+
T Consensus 188 ~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~d 229 (460)
T KOG3771|consen 188 YSSRVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLFD 229 (460)
T ss_pred HHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 544322345566688899999998885555554444444443
No 211
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=98.33 E-value=0.00037 Score=69.31 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHH
Q 003309 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVL 95 (832)
Q Consensus 16 i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l 95 (832)
.+..++.|...++.+-.+-...-.|+-.+.++=.....|+..+..|.....-+. ...|.+|++.+..+.+|+...
T Consensus 13 ~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l-----~~~L~~fae~la~vqDYRqa~ 87 (219)
T PF06730_consen 13 TKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNL-----KLGLKNFAECLAKVQDYRQAE 87 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccH-----hhHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555556666655555555688888888866422222 247999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhH--HhHHHHHHHHHHHHHHHHHHHHH
Q 003309 96 RSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDV--AAILEEELHSARSAFEQARFSLV 173 (832)
Q Consensus 96 ~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~--~~e~~~~l~~~r~~f~~~sld~~ 173 (832)
+.+++..+++||..|-.. ++..++.-|.+.+++.+=-..+.++-.++.+.+... +..++.+|..+...-..+.-.+-
T Consensus 88 v~RlE~KVv~pL~~Y~~~-cK~~r~elK~~~~ar~kEikq~~~Leklr~k~psdr~~isqae~el~kas~~~~rt~~~Le 166 (219)
T PF06730_consen 88 VERLEAKVVEPLSQYGTI-CKHARDELKKFNKARNKEIKQLKQLEKLRQKNPSDRQIISQAESELQKASVDATRTTKQLE 166 (219)
T ss_pred HHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999643 566666555666555543333333333333322222 45567778877777777777788
Q ss_pred HHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 174 TALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (832)
Q Consensus 174 ~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 211 (832)
..|..++.++=-++-..+.+|+.....|.-++.|++..
T Consensus 167 e~i~~FEkqKl~DlK~i~sdFv~iEM~fHaKALEv~T~ 204 (219)
T PF06730_consen 167 ETIDNFEKQKLKDLKKIFSDFVTIEMVFHAKALEVYTA 204 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887766677777889999999999999888754
No 212
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.33 E-value=4.2e-06 Score=74.34 Aligned_cols=107 Identities=18% Similarity=0.369 Sum_probs=61.6
Q ss_pred EEEEEEecCC-CCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccc
Q 003309 295 RQGYLSKRSS-NLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (832)
Q Consensus 295 k~G~L~K~~~-~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (832)
.+|||..... +.+++|+|+|+||. +..+++|....++.. .... .....+... |...
T Consensus 4 ~EGwvkvP~~~~~krGW~r~~vVv~-~~Kl~lYd~e~~k~~-~p~~-------------~~~~vLdlr------D~~f-- 60 (122)
T cd01243 4 YEGHVKIPKPGGVKKGWQRALVVVC-DFKLFLYDIAEDRAS-QPSV-------------VISQVLDMR------DPEF-- 60 (122)
T ss_pred ceeeEeccCCCCcccCceEEEEEEe-CCEEEEEeCCccccC-CccC-------------ceeEEEEcC------CCCE--
Confidence 5899975433 45679999999999 455556665443210 0000 000000000 0000
Q ss_pred cccccccccccccCCcccCCcceEEEec-------CCceEEEEeCCHHHHHHHHHHHHHH
Q 003309 374 RHTVNLLTSTIKVDADQSDLRFCFRIIS-------PTKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 374 ~~~i~l~~~~v~~~~~~~~r~~~F~I~t-------~~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
.--.+..+.+ ...+..|.++-|.|.+ +..+.+|-|+|+.|.+.|+.|++..
T Consensus 61 -sV~~VtasDv-i~a~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 61 -SVSSVLESDV-IHASKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred -EEEEecHHHc-cccCcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 0001111122 2345668899999976 3478999999999999999998753
No 213
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.32 E-value=9.7e-07 Score=95.86 Aligned_cols=97 Identities=25% Similarity=0.424 Sum_probs=86.5
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGAN--INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS 809 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gad--vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~Tp 809 (832)
++-.++.+..|.||+|+..|+-++|+++|++|.. +++.|..|.|+||-|+..++..++.+|++.||.+...|..|.||
T Consensus 891 ~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp 970 (1004)
T KOG0782|consen 891 SLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTP 970 (1004)
T ss_pred ceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCCh
Confidence 3444567789999999999999999999999874 67788999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcHHHHHHHhhC
Q 003309 810 LELAVESNFADSEVLAILSDS 830 (832)
Q Consensus 810 L~~A~~~g~~d~~iv~lLl~~ 830 (832)
-.-|-..|. .++..+|-.+
T Consensus 971 ~eraqqa~d--~dlaayle~r 989 (1004)
T KOG0782|consen 971 QERAQQAGD--PDLAAYLESR 989 (1004)
T ss_pred HHHHHhcCC--chHHHHHhhh
Confidence 999998876 7888887653
No 214
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.31 E-value=4.3e-07 Score=97.12 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=77.6
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
-.++.|++.||+..+.++++ .|.|++.
T Consensus 508 i~~~~aa~~GD~~alrRf~l-~g~D~~~---------------------------------------------------- 534 (622)
T KOG0506|consen 508 INVMYAAKNGDLSALRRFAL-QGMDLET---------------------------------------------------- 534 (622)
T ss_pred hhhhhhhhcCCHHHHHHHHH-hcccccc----------------------------------------------------
Confidence 35777889999999988874 3666543
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA 797 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 797 (832)
.|.+.+|+||.||..|+++++++||.. +.+++.+|.+|+|||.-|...+|.+++++|-++-.
T Consensus 535 ----~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 535 ----KDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY 597 (622)
T ss_pred ----cccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence 567889999999999999999999987 89999999999999999999999999999988644
No 215
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.28 E-value=1.6e-06 Score=94.89 Aligned_cols=87 Identities=29% Similarity=0.380 Sum_probs=77.6
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCC--CC--ccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 003309 743 LLHLACDSADIGMLELLLQYGAN--IN--ATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNF 818 (832)
Q Consensus 743 pLh~Aa~~g~~~~v~~Ll~~gad--vn--~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~ 818 (832)
-|.-|+...++..+-+||.+|.. +| ..+..|+|+||+||..|++.+..+|+=+|+|+.++|..|.|||.||...|.
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s 706 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS 706 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence 36678888889999999999864 33 345578999999999999999999999999999999999999999999998
Q ss_pred CcHHHHHHHhhCC
Q 003309 819 ADSEVLAILSDSH 831 (832)
Q Consensus 819 ~d~~iv~lLl~~g 831 (832)
.+++.+|+++|
T Consensus 707 --qec~d~llq~g 717 (749)
T KOG0705|consen 707 --QECIDVLLQYG 717 (749)
T ss_pred --HHHHHHHHHcC
Confidence 99999999987
No 216
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=98.28 E-value=0.00023 Score=71.58 Aligned_cols=178 Identities=13% Similarity=0.165 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHH-HHHH
Q 003309 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGT-YKEV 94 (832)
Q Consensus 16 i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~-~~~~ 94 (832)
.+..|.....++..++++.|.++.|++++......+..+++++.++........ ......|.....++.+ ....
T Consensus 7 fd~~e~rF~~~e~~~~~l~kd~k~Y~~~~~~~~~~~~~~~~~~~d~y~~~~~~~-----~~~~~~~~~~~~~~~~~~~~e 81 (195)
T cd07589 7 FDELEKKFGSLEKQVQLVVRNVELYLQHVQESVLVKVLALEVVLDLYPSNHPRL-----ESKWERFRRVVRGISSKALPE 81 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999999999999999999887776666778888877755321111 1234566667766665 4567
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVT 174 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~ 174 (832)
+...+...++.|+..++.- +++++..=++=+....+||....+..+ +..++.++..++..|...--.+..
T Consensus 82 ~~~~i~~~V~~Pl~~~~~~-~~~~~k~I~KR~~KllDYdr~~~~~~k---------~~k~e~~l~~a~~~y~~lN~~L~~ 151 (195)
T cd07589 82 FKSRVRKLVIEPLSSLLKL-FSGPQKLIQKRYDKLLDYERYKEKKER---------GGKVDEELEEAANQYEALNAQLKE 151 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHhhhhccHHHHHHHHHh---------hcchHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999876 677766666666677889987777544 223567899999999999999999
Q ss_pred HHHhhhhhchhhHHH-HHHHHHHHHHHHHHHHHHHH
Q 003309 175 ALSNVEAKKRFEFLE-AVSGTMDAHLRYFKQGYELL 209 (832)
Q Consensus 175 ~l~~~~~~~~~e~l~-~l~~~~~a~~~ff~~g~~~~ 209 (832)
.|..+-.... .++. .+.+|+..|.+||...++.+
T Consensus 152 ELP~l~~~~~-~~l~~~~~s~~~~Q~~~~~~~~~~~ 186 (195)
T cd07589 152 ELPKFNQLTA-QLLETCLKSFVELQRDLYDTLLKRA 186 (195)
T ss_pred HhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888877654 5555 55689999999999887764
No 217
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=98.24 E-value=0.00039 Score=67.39 Aligned_cols=190 Identities=14% Similarity=0.165 Sum_probs=138.9
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHH
Q 003309 18 GLEESAEVLRE---RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 18 ~~E~~i~~l~~---~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
++|.+|+.++. .+..+.|.++.|..-+-.....+..+...|.+.+...... .+..+...+.++..-+..+..
T Consensus 3 ELdakielfrsvq~t~~~Llk~i~~yq~~l~~lsq~e~~LG~fl~e~~~~d~t~-----ag~~m~~t~KaL~~sg~qrl~ 77 (204)
T cd07661 3 ELDAKLELFRSVQDTCLELLKIIDNYQERLCILSQEENVLGKFLKEQGKIDKTT-----AGKMMAATGKALSFSSQQRLA 77 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhh-----hccHHHHHHHHHHHhHHHHHH
Confidence 46677776655 5778888888888877777777788888888776532111 134455555555443333322
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccC------CchhHHhHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKG------TKTDVAAILEEELHSARSAFEQA 168 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~------k~~~~~~e~~~~l~~~r~~f~~~ 168 (832)
.... -..|.+-+..|+..-|..-...-+.||.++.+||+++.-....+.. +..++.+.+..++...|..|++.
T Consensus 78 ~r~p-l~~f~~~v~Tf~~rai~Dtl~Ti~~~E~aR~EY~a~~~~mk~~s~eldP~~~~~l~kfr~aQ~qvr~~K~kfdkL 156 (204)
T cd07661 78 LRVP-LLRLYQEVETFRERAIADTLQTIQRMEKCRTEYRAALLWMKSVSQELDPDTYKQLEKFRKAQAQVRSAKERFDKL 156 (204)
T ss_pred HHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 3577888999999999999999999999999999999988555543 34556778889999999999999
Q ss_pred HHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003309 169 RFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQME 213 (832)
Q Consensus 169 sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~ 213 (832)
..|.+.++..+...+.=-+=..|+.|-.+...||.+....+..+.
T Consensus 157 k~Dv~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~~~~i~ 201 (204)
T cd07661 157 KMDVCQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRTMATIH 201 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876644445667788888888888777776553
No 218
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=98.23 E-value=0.00045 Score=70.80 Aligned_cols=188 Identities=14% Similarity=0.146 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYK 92 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~ 92 (832)
|..|..+|.++..+.+.++.+++.=+.+... ...|+.++..++..... . -++.+|.+|++....+....
T Consensus 10 k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~-------~~efa~~~~~L~~~E~~---~-~l~~~l~~~a~~~~~~~~~~ 78 (216)
T cd07627 10 KQYLDSLESQLKQLYKSLELVSSQRKELASA-------TEEFAETLEALSSLELS---K-SLSDLLAALAEVQKRIKESL 78 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcc---h-HhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544443 45688888888764211 1 13468999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHHHHHHH-------HHHHHhHHHHHHHHHHHhcccC-C-chhH-------HhHHHH
Q 003309 93 EVLRSQVEHMLNDRLLQYVNIDLHEVKEARK-------CFDKASLLYDQAREKFLSLRKG-T-KTDV-------AAILEE 156 (832)
Q Consensus 93 ~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk-------~fek~~~~yd~al~k~~~~~k~-k-~~~~-------~~e~~~ 156 (832)
.....+....|..||..++.- +.-+|..=. .|+.....++.+..+..++... + .+++ +++++.
T Consensus 79 ~~~a~~e~~~l~~~L~ey~r~-~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~ 157 (216)
T cd07627 79 ERQALQDVLTLGVTLDEYIRS-IGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAER 157 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 888878788888899888654 444443322 2333333333333222222111 1 1233 345666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003309 157 ELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (832)
Q Consensus 157 ~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l 212 (832)
....+++.|...+-..-..|..++..+-.+|-..|..|+.++..++++..+.++.+
T Consensus 158 ~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f 213 (216)
T cd07627 158 RASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETF 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788899999998888899999988888999999999999999999998887654
No 219
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.22 E-value=1.8e-06 Score=94.41 Aligned_cols=74 Identities=27% Similarity=0.348 Sum_probs=65.6
Q ss_pred ccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 003309 722 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 795 (832)
Q Consensus 722 ~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ 795 (832)
...++......++..|..|.||||+|+..|+...++.|+.+||++..+|..||+|||-|+..|+..++..+|.+
T Consensus 37 ~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 37 EQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred HHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 33344446778888999999999999999999999999999999999999999999999999999888777654
No 220
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.20 E-value=5e-06 Score=73.14 Aligned_cols=96 Identities=17% Similarity=0.309 Sum_probs=56.3
Q ss_pred eEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccc
Q 003309 294 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (832)
Q Consensus 294 ~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (832)
+|+||+.--+.. -+.|||+|+.|+.+++-+|......++-..+ +
T Consensus 1 lkEGWmVHyT~~-d~~rKRhYWrLDsK~Itlf~~e~~skyyKeI-----------------------------------P 44 (117)
T cd01239 1 LKEGWMVHYTSS-DNRRKKHYWRLDSKAITLYQEESGSRYYKEI-----------------------------------P 44 (117)
T ss_pred CccceEEEEecC-ccceeeeEEEecCCeEEEEEcCCCCeeeEEe-----------------------------------e
Confidence 379999755433 3679999999996666555444333221110 1
Q ss_pred ccc-ccccccccccCCcccCCcceEEEecCCceEEEEeCC--------------------HHHHHHHHHHHHHH
Q 003309 374 RHT-VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAES--------------------ALDQMDWIEKITGV 426 (832)
Q Consensus 374 ~~~-i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s--------------------~~e~~~Wi~ai~~~ 426 (832)
..+ +.+..+.... .....+.+||||+|.+.+|+.+.+. .+..+.|-.||++|
T Consensus 45 LsEIl~V~~~~~~~-~~~~~~~hcFEi~T~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 45 LAEILSVSSNNGDS-VLAKHPPHCFEIRTTTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred hHHheEEeccCCCc-CCCCCCCcEEEEEecCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 011 1111111110 1123568999999999999998752 34457788888754
No 221
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=98.19 E-value=0.00081 Score=69.25 Aligned_cols=187 Identities=14% Similarity=0.154 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~ 102 (832)
|+.|+..|+++.+.+..++..-.+...+...|+.++..++...... -++.+|.++|+....+.......-.+....
T Consensus 21 i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~----~Ls~al~~la~~~~ki~~~~~~qa~~d~~~ 96 (224)
T cd07623 21 IENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHT----SLSRALSQLAEVEEKIEQLHGEQADTDFYI 96 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555443333334556888888887743211 145789999999999999988888888888
Q ss_pred HHHHHHHHhHhhhHHHH---HHH----HHHHHHhHHHHHHHHHHHhcccCCchhHH-------hHHHHHHHHHHHHHHHH
Q 003309 103 LNDRLLQYVNIDLHEVK---EAR----KCFDKASLLYDQAREKFLSLRKGTKTDVA-------AILEEELHSARSAFEQA 168 (832)
Q Consensus 103 ~~~pL~~f~~~di~~~k---e~r----k~fek~~~~yd~al~k~~~~~k~k~~~~~-------~e~~~~l~~~r~~f~~~ 168 (832)
+..||..++.- |..++ ..| ..+.....++.....+...+.....++++ .+++.....+++.|...
T Consensus 97 l~e~L~eY~r~-i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~i 175 (224)
T cd07623 97 LAELLKDYIGL-IGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEI 175 (224)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888653 33222 222 22333333334444433333222233333 44556677788889888
Q ss_pred HHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003309 169 RFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (832)
Q Consensus 169 sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~ 214 (832)
+--.-..|..++..+-.+|-..|..|+..+..|.++..++++.+-|
T Consensus 176 s~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~p 221 (224)
T cd07623 176 SKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLP 221 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888888988888899999999999999999999999887655
No 222
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=98.13 E-value=0.0014 Score=67.31 Aligned_cols=189 Identities=14% Similarity=0.159 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~ 101 (832)
.|+.|+..|+++.+.+..++..-.+...+...|+.++..++...... .++.+|..+++....+...+.....+...
T Consensus 30 yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~----~ls~~l~~laev~~ki~~~~~~qa~~d~~ 105 (234)
T cd07664 30 QFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHT----ALSRALSQLAEVEEKIDQLHQDQAFADFY 105 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc----hHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35556666666666666665543444444567888888887743221 24568899999988888888888888888
Q ss_pred HHHHHHHHHhHh--hhHHHHHHHHH----HHHHhHHHHHHHHHHHhcccCCchhHHhHH-------HHHHHHHHHHHHHH
Q 003309 102 MLNDRLLQYVNI--DLHEVKEARKC----FDKASLLYDQAREKFLSLRKGTKTDVAAIL-------EEELHSARSAFEQA 168 (832)
Q Consensus 102 ~~~~pL~~f~~~--di~~~ke~rk~----fek~~~~yd~al~k~~~~~k~k~~~~~~e~-------~~~l~~~r~~f~~~ 168 (832)
.|..||..++.- -++.+-..|.+ +.....++.....+...+....+++++.++ +.....+++.|...
T Consensus 106 ~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~I 185 (234)
T cd07664 106 LFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQI 185 (234)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999888653 22333233332 222222233222222222222234444444 44555667777777
Q ss_pred HHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003309 169 RFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (832)
Q Consensus 169 sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~ 214 (832)
+-..=..|..++..+--+|-..+..|+.++..+=++..++++.+-|
T Consensus 186 s~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~p 231 (234)
T cd07664 186 SKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLP 231 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7666667777877777788999999999999988888888777655
No 223
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=98.11 E-value=0.0012 Score=65.80 Aligned_cols=198 Identities=17% Similarity=0.142 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC-CCCCCccccCchHHHHHHHHHHHHHHHHHHHH
Q 003309 18 GLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG-HNDPISVAFGGPVMTKFTIALREIGTYKEVLR 96 (832)
Q Consensus 18 ~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~-~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~ 96 (832)
-|-.-++.+.=-+..++...+.|..++..+..+...|.++|...+.. ..... ...+|.+|.+.++..++|......+.
T Consensus 12 ~yk~imeqfnP~lrnlv~~G~~Y~kal~a~~~a~~~y~dAl~Kige~A~~s~g-SkeLG~~L~~m~~~hr~i~~~le~~l 90 (232)
T cd07646 12 VYKTIMEQFNPSLRNFIAMGKNYEKALASVTFAAKGYFDALVKMGELASESQG-SKELGDVLFQMAEVHRQIQNQLEEML 90 (232)
T ss_pred HHHHHHHccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555677777777777777776666778999999888642 11111 23467889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHH----hHHHHHHHHHHHhcccCC----chhHHhHHHHHHHH---HHHHH
Q 003309 97 SQVEHMLNDRLLQYVNIDLHEVKEARKCFDKA----SLLYDQAREKFLSLRKGT----KTDVAAILEEELHS---ARSAF 165 (832)
Q Consensus 97 ~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~----~~~yd~al~k~~~~~k~k----~~~~~~e~~~~l~~---~r~~f 165 (832)
..+...++.||++=++-|++-+....|+|.-. .+.|+.+.+...+++|+. .+..-.+-+.+.-+ .|+.=
T Consensus 91 k~Fh~eli~pLE~k~E~D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~k~~~ky~~ke~q~~~~~~~~q~e 170 (232)
T cd07646 91 KSFHNELLTQLEQKVELDSRYLTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQGSKNPQKYSDKELQYIEAISNKQGE 170 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888554 345666666665666552 22222222222221 11110
Q ss_pred HHHHHHHHHHHHhhhhhchhh-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003309 166 EQARFSLVTALSNVEAKKRFE-FLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (832)
Q Consensus 166 ~~~sld~~~~l~~~~~~~~~e-~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~ 216 (832)
.++=..--.+=..+++++++- +++.=+.+.+...+|+.+|.+++.+--|..
T Consensus 171 le~f~~~~~k~Al~EErRRycflvdk~C~~~~~~~~yh~k~~~lL~~kl~~W 222 (232)
T cd07646 171 LENYVSDGYKTALTEERRRYCFLVEKQCAVAKNSIAYHSKGKELLTQKLPSW 222 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 000001111223355555554 467888999999999999999986644433
No 224
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=98.09 E-value=0.0016 Score=65.52 Aligned_cols=176 Identities=11% Similarity=0.129 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~ 102 (832)
++.|...|..+.|....++.........-..|...+..++.... .++.+|.+.|.++..+......+... ...
T Consensus 23 ~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~------~l~~~le~~g~~~d~~~~~~~~~~~~-~~~ 95 (201)
T cd07622 23 SDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEK------EMGDGLQKAGHYMDSYAASIDNGLED-EEL 95 (201)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------hHHHHHHHHHHHHHHHHHHHHHHHHh-hhh
Confidence 44444444444444444443333333333567777777766431 23456777777776666655554433 467
Q ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003309 103 LNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAK 182 (832)
Q Consensus 103 ~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~ 182 (832)
|..||..++.- ..-++..-|.=+..|.+|+.+.+..... ..+.+.++..++..+....-+...-+..++..
T Consensus 96 f~e~LkEy~~y-a~slk~vlk~r~~~q~~~e~~~~~L~~k--------~~~l~~~ve~a~~~~e~f~~~~~~E~~rF~~~ 166 (201)
T cd07622 96 IADQLKEYLFF-ADSLRAVCKKHELLQYDLEKAEDALANK--------KQQGEEAVKEAKDELNEFVKKALEDVERFKKQ 166 (201)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998654 4555555556666677777655443222 23477789999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003309 183 KRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (832)
Q Consensus 183 ~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~ 214 (832)
|..++-+.|.+|...|..||+++.+.+..++.
T Consensus 167 K~~dlk~~l~~~A~~qi~~~~~~~~~W~~~~~ 198 (201)
T cd07622 167 KVRDLKEILISYAKLQIKLAKKGLQTWTNIKE 198 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998877654
No 225
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=98.05 E-value=3.1e-05 Score=89.68 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=63.2
Q ss_pred ceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
.+.+.|||+|.+... .|++|||.+.++++...+....+. .+.. ...
T Consensus 376 Dv~~~G~l~k~~~~~--~wk~ry~~l~~~~l~~~~~~~~~~-~~~~-------------------------------~~~ 421 (478)
T PTZ00267 376 DVTHGGYLYKYSSDM--RWKKRYFYIGNGQLRISLSENPEN-DGVA-------------------------------PKS 421 (478)
T ss_pred CcccceEEeccCCCc--chhhheEEecCCceEEEecccccc-CCCC-------------------------------Ccc
Confidence 346799999996543 499999999977766665533221 0100 000
Q ss_pred cccccccccccccccCCcccCCcceEEEec-CCceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIKVDADQSDLRFCFRIIS-PTKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t-~~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
. .-..+..++..+......+++||.|.+ ..+.+.|+|+|++||++||.+||.++
T Consensus 422 ~--~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 422 V--NLETVNDVFPVPEVYSQKHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred c--cHHHhcccccccHHhcCCCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHh
Confidence 0 001112222211112335689999966 56889999999999999999999886
No 226
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=98.02 E-value=0.0022 Score=65.65 Aligned_cols=189 Identities=13% Similarity=0.098 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~ 101 (832)
.|+.|+..|+++.|....++..-.+...+...|+.++..++....+. .++.+|..+++....+...+...-.+...
T Consensus 30 ~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~----~Ls~als~laev~~~i~~~~~~qa~qd~~ 105 (234)
T cd07665 30 EVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNT----ALSRALSQLAEVEEKIEQLHQEQANNDFF 105 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666655543444444556888888877643222 14468999999999999998888888889
Q ss_pred HHHHHHHHHhHh--hhHHHHHHHHHHHHHhHHHHHHHHH----HHhcccCCchhHHhHHHH-------HHHHHHHHHHHH
Q 003309 102 MLNDRLLQYVNI--DLHEVKEARKCFDKASLLYDQAREK----FLSLRKGTKTDVAAILEE-------ELHSARSAFEQA 168 (832)
Q Consensus 102 ~~~~pL~~f~~~--di~~~ke~rk~fek~~~~yd~al~k----~~~~~k~k~~~~~~e~~~-------~l~~~r~~f~~~ 168 (832)
+|..||..++.- -|+.+-+.|.+--.....-++-+.| ...+....+++++..++. .+..+++.|.+.
T Consensus 106 ~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~i 185 (234)
T cd07665 106 LLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYERDFERI 185 (234)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998653 2333334444333333333332222 222222223455554444 455566666666
Q ss_pred HHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003309 169 RFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (832)
Q Consensus 169 sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~ 214 (832)
+--.=..|..++..+--+|=..+..|+.++...=++..++++.+-|
T Consensus 186 s~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qke~ie~We~flp 231 (234)
T cd07665 186 SATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFLP 231 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5444455566665555566666777777777777776666655543
No 227
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=98.00 E-value=0.0018 Score=63.23 Aligned_cols=200 Identities=12% Similarity=0.193 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHH
Q 003309 12 FRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTY 91 (832)
Q Consensus 12 FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~ 91 (832)
.|.+...|-.-++.+.=.+.+++-..+.|..++.-+..+...|-+++...|-.-........+|.+|..+++..++|...
T Consensus 4 ~r~t~~~Yk~imeqFNP~lrnlv~lGk~Y~kA~~a~t~aa~~Yf~Al~KiGe~A~~s~~s~~LG~vLmqisev~r~i~~~ 83 (215)
T cd07644 4 YRSTISIYKSIMEQFNPALENLVYLGNNYLRAFHALSEAAEVYFSAIAKIGEQALQSLTSQSLGEILIQMSETQRKLSAD 83 (215)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888999999999999888777777778889999888752111111223677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhH----HHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHH
Q 003309 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASL----LYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQ 167 (832)
Q Consensus 92 ~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~----~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~ 167 (832)
.+..+..+-.-++.||++=++-|.+-+...+|+|+-... .||.+......++|+.+.. ..|..+-+...+..-+
T Consensus 84 le~~lk~FH~ell~~LEkk~elD~kyi~~s~KkYq~E~r~k~dsleK~~selkk~rrk~qkn-~~e~kE~~~~lq~~~~- 161 (215)
T cd07644 84 LEVVFQTFHVDLLQHMDKNTKLDMQFIEDSRRVYELEYRHRAANLEKCMSELWRMERQRDRN-VREMKENVNRLRQSMQ- 161 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCC-chhhHHHHHHHHHHHH-
Confidence 888888999999999999999999999999999987754 4565555444444443211 1233222222222211
Q ss_pred HHHHHHHHHHhhhhhchhhH-HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003309 168 ARFSLVTALSNVEAKKRFEF-LEAVSGTMDAHLRYFKQGYELLHQME 213 (832)
Q Consensus 168 ~sld~~~~l~~~~~~~~~e~-l~~l~~~~~a~~~ff~~g~~~~~~l~ 213 (832)
.-++=-.+=..+++++++-| ++.-+.+-..+..|.++|.+++++--
T Consensus 162 ~f~~~~~k~Al~eErRRy~Flvek~c~~~k~~~~yh~ka~~ll~~kl 208 (215)
T cd07644 162 AFLKESQRAAELEEKRRYRFLAEKHYLLNNTFLQFQSRARGMLQTRV 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11111133344666666665 56778888889999999999986543
No 228
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.94 E-value=1.2e-05 Score=92.97 Aligned_cols=99 Identities=15% Similarity=0.318 Sum_probs=70.9
Q ss_pred ceeEEEEEEecC-CCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 292 QTIRQGYLSKRS-SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 292 ~~~k~G~L~K~~-~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
.+.-.|+|+.-. +...+.|.||||+|. +|.+.|.+.+.+.. .
T Consensus 989 dVEYrGFLtmfed~sgfGaWhRyWc~L~-gg~I~fWk~PdDEk------------------------------------r 1031 (1116)
T KOG3640|consen 989 DVEYRGFLTMFEDGSGFGAWHRYWCALH-GGEIKFWKYPDDEK------------------------------------R 1031 (1116)
T ss_pred ceeeeeeeeeeeccCCCchhhhhhHHhc-CCeeeeecCcchhc------------------------------------c
Confidence 356689987554 234567999999999 78888887776521 2
Q ss_pred ccccccccccccccccCCcc-----cCCcceEEEec-------------CCc-eEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQ-----SDLRFCFRIIS-------------PTK-NYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~-----~~r~~~F~I~t-------------~~r-t~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
-.+.+.|+|..|+-.. .+. -.|++.|.|.+ ..| ...|.|+|.+|++.|+.+|+.+.-
T Consensus 1032 K~Pig~IDLt~CTsq~-ie~a~rdicar~ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1032 KVPIGQIDLTKCTSQS-IEEARRDICARPNTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred cCcceeeehhhhhccc-cccchhhhccCCceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 2345778998888643 222 24567799883 114 578999999999999999998864
No 229
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.94 E-value=2.2e-05 Score=82.22 Aligned_cols=83 Identities=27% Similarity=0.333 Sum_probs=68.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCc
Q 003309 741 CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD 820 (832)
Q Consensus 741 ~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d 820 (832)
.--|..||+.|.++.|+.|++.|.+||+.|.....||.+|+..||.++|++||++||-...-..+|.-. |+++.+
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLn---- 111 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALN---- 111 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhh----
Confidence 345899999999999999999999999999999999999999999999999999999776555566443 444443
Q ss_pred HHHHHHHh
Q 003309 821 SEVLAILS 828 (832)
Q Consensus 821 ~~iv~lLl 828 (832)
..|-.+|+
T Consensus 112 d~IR~mll 119 (516)
T KOG0511|consen 112 DRIRRMLL 119 (516)
T ss_pred HHHHHHHH
Confidence 23444554
No 230
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=97.91 E-value=0.006 Score=60.28 Aligned_cols=203 Identities=12% Similarity=0.119 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC-CCCCCccccCchHHHHHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG-HNDPISVAFGGPVMTKFTIALREIGTY 91 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~-~~~~~~~~~~~~~l~~f~~~l~ei~~~ 91 (832)
|-+..-+-.-++.+.=.|.+++-..+.|..++.-+..+...|-++|...+.. ..... ...+|.+|..+++..+++...
T Consensus 5 ~lt~~~ykni~eqfnP~lrnLv~lGk~Y~KA~~a~~~A~~~y~dal~Kige~A~~s~~-SkeLG~~L~qi~ev~r~i~~~ 83 (226)
T cd07645 5 KLTESTYKNVMEQFNPGLRNLINLGKNYEKAVNAMVLAGKAYYDGVAKIGEIAAVSPV-SKELGHVLMEISDVHKKLNDS 83 (226)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHHHH
Confidence 3444555556677777788888888888888777777778899999888752 12222 234678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhH----HHHHHHHHHHhcccCC----chhHHhHHHHH---HHH
Q 003309 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASL----LYDQAREKFLSLRKGT----KTDVAAILEEE---LHS 160 (832)
Q Consensus 92 ~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~----~yd~al~k~~~~~k~k----~~~~~~e~~~~---l~~ 160 (832)
...++..+-.-++.||++=++-|++-+....|+|..... .+|.+.+...+++++. .+.+-.+-+.+ ...
T Consensus 84 le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq~E~k~k~dsLeK~~seLKK~RRKsqg~kn~~kye~Ke~~~~e~~~ 163 (226)
T cd07645 84 LEENFKKFHREIIAELERKTDLDVKYMTATLKRYQTEHKNKLDSLEKSQADLKKIRRKSQGRRNASKYEHKENEYLETVT 163 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence 898998999999999999999999999999999987755 4555554445555543 22211111111 111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhh-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003309 161 ARSAFEQARFSLVTALSNVEAKKRFE-FLEAVSGTMDAHLRYFKQGYELLHQMEPYI 216 (832)
Q Consensus 161 ~r~~f~~~sld~~~~l~~~~~~~~~e-~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~ 216 (832)
.|+.=.+.-..--.+=..+++++++- +++.-+.+.+....|+.+|.+++.+--|..
T Consensus 164 ~~q~el~~f~~~~~k~AL~EErRRycFlvdkhC~~~~~~~~yh~k~~~lL~~klp~W 220 (226)
T cd07645 164 SRQSDIQKFIADGCREALLEEKRRFCFLVDKHCSFSNHIHYFHQQAAELLNSKLPVW 220 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence 11111011001111222345555554 467889999999999999999996644433
No 231
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.90 E-value=2.4e-05 Score=74.71 Aligned_cols=73 Identities=21% Similarity=0.183 Sum_probs=66.3
Q ss_pred CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 003309 730 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYG-ANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV 802 (832)
Q Consensus 730 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~g-advn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~ 802 (832)
+.++|.+|..|+|||+.|+..|+.+.+.+|+.+| +.|.+.|..|.+++.+|-..|+.++|..|.++-.+-...
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p 75 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHP 75 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCc
Confidence 4678999999999999999999999999999999 899999999999999999999999999999875544333
No 232
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.90 E-value=0.0081 Score=61.36 Aligned_cols=190 Identities=15% Similarity=0.117 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHH
Q 003309 11 MFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGT 90 (832)
Q Consensus 11 ~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~ 90 (832)
.||..|+.|.--...+...+++++|.=+.+... ...|..++..++...... -++.++.++|+....+.+
T Consensus 22 ~~rp~vk~~y~~~~~l~~~~~~lvk~rr~La~~-------~~dfg~~l~~Ls~~E~~~----~L~~a~~kLg~v~~~v~d 90 (230)
T cd07625 22 EFRPLVKSIYLTAQDLQEKLLRVSKARKQLSLE-------EADFGQKLIQLSVEETHH----GLGNLYEKFGKVLTAVGD 90 (230)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhcccc----hHHHHHHHHHHHHHHHhh
Confidence 599999999999999999999999888877665 346888888886643211 245789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHHHH---HHH-HHHHHHhHHHHHHHHHHHhcccC-----CchhHHhHHHHHHHHH
Q 003309 91 YKEVLRSQVEHMLNDRLLQYVNIDLHEVK---EAR-KCFDKASLLYDQAREKFLSLRKG-----TKTDVAAILEEELHSA 161 (832)
Q Consensus 91 ~~~~l~~~~~~~~~~pL~~f~~~di~~~k---e~r-k~fek~~~~yd~al~k~~~~~k~-----k~~~~~~e~~~~l~~~ 161 (832)
++..--+....+|.+||..++.. +..+| ..| +-|...+.--.++..|..++.|- -.|+++.|+..+|.++
T Consensus 91 l~~~QA~~d~~tl~d~L~~~~~~-~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA 169 (230)
T cd07625 91 IDSIQATVDMATLYDGLEWISRD-AYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEA 169 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHH
Confidence 99988888889999999998654 33333 222 22332222222333333322222 1366666666666654
Q ss_pred -------HHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003309 162 -------RSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (832)
Q Consensus 162 -------r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l 212 (832)
+..|...+-+....+..+...+.-+|-..+..|+..+..+-++-..+|+.+
T Consensus 170 ~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~lE~~ 227 (230)
T cd07625 170 TKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSLLERI 227 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555555555555555566666666666665555555444
No 233
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.88 E-value=0.0047 Score=61.55 Aligned_cols=176 Identities=15% Similarity=0.094 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHH
Q 003309 18 GLEESAEVLRERSL-KFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLR 96 (832)
Q Consensus 18 ~~E~~i~~l~~~l~-kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~ 96 (832)
.+|+.++.++..|. .+.|..+.++.........-..|...+..|+...... .++..|.+||.++.........|.
T Consensus 8 ~~e~~~~~~~~~L~~~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~~E~~~----~L~~~le~~g~a~D~~~~~~~~l~ 83 (187)
T cd07629 8 DIEAETKKYEQLLHGGMEKVNRRITKRLGDLAEDMADLGGRFNAFSLEEQKS----ELAEALEKVGQAVDSTYLATEALV 83 (187)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443 3444444444332222222345777777776643221 245789999999999999889999
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHH-HHHHHH
Q 003309 97 SQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQAR-FSLVTA 175 (832)
Q Consensus 97 ~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~s-ld~~~~ 175 (832)
..+...|.+||..++.- +.-++..-|.-+..+..|+. +.+++ ..++.++.+.|...+ -..-..
T Consensus 84 ~~l~~~f~EpL~E~~~y-~~s~k~vlk~R~~K~~Q~e~-l~~~L--------------~e~~~~~~~~~~~~~~~~~~~e 147 (187)
T cd07629 84 GSLYYNINEPLSESAQF-AGVVRELLKYRKLKHVQYEM-TKDSL--------------LESALVAASDDLVISSTIKQKD 147 (187)
T ss_pred HHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998664 45555555555555666654 33333 122234444555553 566677
Q ss_pred HHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003309 176 LSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQME 213 (832)
Q Consensus 176 l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~ 213 (832)
|...+..+..++=+.+.+|...|..|+.++.+.+++++
T Consensus 148 l~rF~~ek~~dl~~~l~~~a~~~~~~a~~~~~~W~~~~ 185 (187)
T cd07629 148 LPRFQREREADLREILKNYSKYHKDWAKQNLEAWKEAK 185 (187)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888889999999999999999999988887764
No 234
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.88 E-value=2.2e-05 Score=74.96 Aligned_cols=66 Identities=26% Similarity=0.280 Sum_probs=62.6
Q ss_pred CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhC
Q 003309 763 GANINATDSRGLTPLHRCILRGKAMFAKLLLTRG-ADPRAVNREGKTSLELAVESNFADSEVLAILSDS 830 (832)
Q Consensus 763 gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~ 830 (832)
+.++|++|..|||||+.|+..|..+.|.+|+.+| +.|...|..|.+++.+|-+.|+ .+++.+|.+.
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~--~~fvh~lfe~ 68 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGA--QAFVHSLFEN 68 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcCh--HHHHHHHHHH
Confidence 5689999999999999999999999999999999 9999999999999999999999 8999998774
No 235
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.85 E-value=2.6e-05 Score=90.30 Aligned_cols=120 Identities=23% Similarity=0.179 Sum_probs=95.0
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCC
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS 730 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~ 730 (832)
....+.|+..||...|.+.|...+. ..
T Consensus 26 e~~fL~a~E~gd~~~V~k~l~~~~~-----------------------------------------------------~~ 52 (822)
T KOG3609|consen 26 EKGFLLAHENGDVPLVAKALEYKAV-----------------------------------------------------SK 52 (822)
T ss_pred hHHHHHHHHcCChHHHHHHHHhccc-----------------------------------------------------cc
Confidence 3567789999999999998844322 11
Q ss_pred CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC----------C
Q 003309 731 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP----------R 800 (832)
Q Consensus 731 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~----------~ 800 (832)
-++|+.|.-|+++||.|..+.+.+++++|++++..+ ..+|.+|+..|..++|++++.+-... .
T Consensus 53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~ 125 (822)
T KOG3609|consen 53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANS 125 (822)
T ss_pred cchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCc
Confidence 245566777999999999999999999999987665 35899999999999999999874332 1
Q ss_pred CCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 801 AVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 801 ~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
..-..+.|||.+||..++ .||+++|+++|+
T Consensus 126 ~~ft~ditPliLAAh~Nn--yEil~~Ll~kg~ 155 (822)
T KOG3609|consen 126 PHFTPDITPLMLAAHLNN--FEILQCLLTRGH 155 (822)
T ss_pred ccCCCCccHHHHHHHhcc--hHHHHHHHHcCC
Confidence 223456799999999998 999999999875
No 236
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.84 E-value=0.0047 Score=63.11 Aligned_cols=179 Identities=14% Similarity=0.182 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHH
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
.+..|++.+..+++...+++|.-..+... -..|+..+........ .++..|..|+.++.++......
T Consensus 59 y~d~l~~~l~~ieki~~Rv~kr~~~l~~d-------~~e~~~~f~~ws~lE~------~l~~~L~~~a~~~~~~s~~l~~ 125 (240)
T cd07667 59 YLDTFALKLGTIDRIAQRIIKEEIEYLVE-------LREYGPVYSTWSGLEG------ELAEPLEGVSACIGNCSTALEE 125 (240)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444432 2345555555544221 1345789999999999888888
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVT 174 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~ 174 (832)
+...+...|+.+|..++-- +..+|..=|.=|..|.+|+.+++-. .+++ +.++..+.++.++...++-..-+...
T Consensus 126 l~~~~~~~yl~~Lke~~~Y-~~slk~vlK~RdqkQ~d~E~l~E~l-~~rr----e~~~kLe~~ie~~~~~ve~f~~~~~~ 199 (240)
T cd07667 126 LTEDMTEDFLPVLREYILY-SESMKNVLKKRDQVQAEYEAKLEAV-ALRK----EERPKVPTDVEKCQDRVECFNADLKA 199 (240)
T ss_pred HHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888878899999998765 6677777788889999999866654 4332 33555666788888888888888888
Q ss_pred HHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003309 175 ALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (832)
Q Consensus 175 ~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l 212 (832)
.+...+..|..|+-..+.+|...|..||+.+.+.++.+
T Consensus 200 E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~~ 237 (240)
T cd07667 200 DMERWQNNKRQDFRQLLMGMADKNIQYYEKCLTAWESI 237 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887765
No 237
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=97.83 E-value=0.01 Score=56.66 Aligned_cols=189 Identities=12% Similarity=0.165 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~ 102 (832)
...-++.=+.|++.+..++..-.+.......|++--.+|+..... ....++.+-..||.+.+.++..+..|+.-+...
T Consensus 10 TRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~~--~~~~LsrAa~~yG~a~~~mEkEre~l~r~l~~Q 87 (209)
T cd07607 10 TRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENPS--VNTALSRASLHYGSARNQMEKERENLHRVLSEQ 87 (209)
T ss_pred HHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCCC--cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334455566777777777765445444567888888888875322 112244567889999999999999999999999
Q ss_pred HHHHHHHHhHh-hhHHHHHHHHHHHHHhHHHHHHHHHHHh-cccCC----chh---HHhHHHHHHHHHHHHHHHHHHHHH
Q 003309 103 LNDRLLQYVNI-DLHEVKEARKCFDKASLLYDQAREKFLS-LRKGT----KTD---VAAILEEELHSARSAFEQARFSLV 173 (832)
Q Consensus 103 ~~~pL~~f~~~-di~~~ke~rk~fek~~~~yd~al~k~~~-~~k~k----~~~---~~~e~~~~l~~~r~~f~~~sld~~ 173 (832)
+.+||...+.. -|...+....+||+.+++-++.-..... ..|.+ .++ +++.++..|.+.+...--..-+-.
T Consensus 88 V~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~M~~LGKEA~ 167 (209)
T cd07607 88 VAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSMNTLGKEAT 167 (209)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999998654 4567788889999999998866555432 23333 222 456778888888888877778888
Q ss_pred HHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003309 174 TALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQME 213 (832)
Q Consensus 174 ~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~ 213 (832)
..|..++.+.---.+..|+..+.+--+|+++..+++++++
T Consensus 168 aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~ 207 (209)
T cd07607 168 SAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLH 207 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999988776667799999999999999999999998875
No 238
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.80 E-value=3.5e-05 Score=86.90 Aligned_cols=96 Identities=17% Similarity=0.397 Sum_probs=66.0
Q ss_pred eeEEEEEEecCCC----CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCC
Q 003309 293 TIRQGYLSKRSSN----LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD 368 (832)
Q Consensus 293 ~~k~G~L~K~~~~----~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (832)
+.|+|.+.|+..+ .++.+|||||-|. +.-|.|.+.+...+.+.++.
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT-~~~Ls~~Ksp~~q~~~~Ipl----------------------------- 614 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLT-TEELSYAKSPGKQPIYTIPL----------------------------- 614 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEec-cceeEEecCCccCcccceeH-----------------------------
Confidence 3455556666532 2368999999999 67788877776654333210
Q ss_pred ccccccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 369 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 369 ~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
..| .+.-+.+..+-+.+++|+||+++|+.+|||.+-.|..+|+.+|..+.
T Consensus 615 ------~nI---~avEklee~sF~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs 664 (800)
T KOG2059|consen 615 ------SNI---RAVEKLEEKSFKMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVS 664 (800)
T ss_pred ------HHH---HHHHHhhhhccCCCceEEEEecCcceeEecCCchHHHHHHHHHHHHh
Confidence 101 11112223344668999999999999999999999999999998775
No 239
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=2.3e-05 Score=85.80 Aligned_cols=112 Identities=25% Similarity=0.401 Sum_probs=70.8
Q ss_pred ccCCcceeEEEEEEecC---------CCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccc
Q 003309 287 AKGKVQTIRQGYLSKRS---------SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRW 357 (832)
Q Consensus 287 ~~~~~~~~k~G~L~K~~---------~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (832)
..+.+.+-|+|+|..+- ...+++||.-|-+|+ |++.|+.+.+-++....+
T Consensus 500 ~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~Lk--G~vLYlqkDey~p~kals------------------- 558 (774)
T KOG0932|consen 500 PDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLK--GMVLYLQKDEYKPGKALS------------------- 558 (774)
T ss_pred CCCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHh--hheEEeeccccCcccchh-------------------
Confidence 34456678999996442 225678999999997 555555554433322110
Q ss_pred cccccCCCCCCccccccccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHHHHc
Q 003309 358 LSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLS 432 (832)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 432 (832)
.+.+.+. ..++-..++ +..+...++|.|.+.|.+ |.|.|||.|.+||++||.-|+-+-+ +++
T Consensus 559 -----e~~lkna-----vsvHHALAt--~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA-~fS 621 (774)
T KOG0932|consen 559 -----ESDLKNA-----VSVHHALAT--PATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAA-AFS 621 (774)
T ss_pred -----hhhhhhh-----hhhhhhhcC--CCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHH-hcc
Confidence 0000000 112222222 345667889999999876 8999999999999999999986644 443
No 240
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=97.78 E-value=6.2e-05 Score=82.11 Aligned_cols=38 Identities=32% Similarity=0.677 Sum_probs=30.0
Q ss_pred CCcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEec
Q 003309 289 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRK 328 (832)
Q Consensus 289 ~~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~ 328 (832)
..+.+.++|+||.|+ ..+|+|||.||||+..|+ ||..+
T Consensus 313 s~~~pei~GfL~~K~-dgkKsWKk~yf~LR~SGL-Yys~K 350 (622)
T KOG3751|consen 313 SSSPPEIQGFLYLKE-DGKKSWKKHYFVLRRSGL-YYSTK 350 (622)
T ss_pred cCCCccccceeeecc-cccccceeEEEEEecCcc-eEccC
Confidence 356789999999994 457899999999997775 44444
No 241
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.73 E-value=0.016 Score=58.23 Aligned_cols=182 Identities=18% Similarity=0.147 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHH
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
.|..+|..+..+.+.++++++.=+.+... ...|+.++..+++....+. ..++..|.++++....+......
T Consensus 12 yl~~l~~~lk~~~~~~~~lv~~rk~la~~-------~~~fs~al~~L~~~E~~~~--~~l~~~l~~lse~~e~i~~~~~~ 82 (198)
T cd07630 12 MNTKLSANMKEAAEKFLKIVNTEQRLANA-------LGHLSSSLQLCVGLDEASV--VALNRLCTKLSEALEEAKENIEV 82 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcccccch--HhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445444444444444444444443 3457788877776432221 02356788999998888888888
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVT 174 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~ 174 (832)
.-.+...+|..||..++.- |..+|+.--+=-++-..|+.+.. .+.|.+ +.+...++.....++..|...+---=.
T Consensus 83 ~a~~d~~~Lg~~L~~Y~r~-i~a~K~~l~~R~~~~~~~~~a~k---~l~Kar-~~k~~~ae~~~~~a~~~fe~iS~~~k~ 157 (198)
T cd07630 83 VAGNNENTLGLTLDLYSRY-SESEKDMLFRRTCKLIEFENASK---ALEKAK-PQKKEQAEEAKKKAETEFEEISSLAKK 157 (198)
T ss_pred HHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHhH-HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999998888654 44444332222233334444322 223333 223344666777788888888866666
Q ss_pred HHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003309 175 ALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH 210 (832)
Q Consensus 175 ~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~ 210 (832)
.|..++.++-.+|=..|..|+.++...-+..++++.
T Consensus 158 EL~rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~ 193 (198)
T cd07630 158 ELERFHRQRVLELQSALVCYAESQIKNAKEAAAVLT 193 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777766667777777777777777766666654
No 242
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=97.67 E-value=0.021 Score=57.64 Aligned_cols=198 Identities=15% Similarity=0.147 Sum_probs=117.1
Q ss_pred CCcccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHH
Q 003309 2 HFNKLDDS-PMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTK 80 (832)
Q Consensus 2 ~~~~l~DS-P~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~ 80 (832)
++.+.+|+ |+|-.... .++.++..|+++.+.+..++..-.+...+...|+.+|..... ++.. -++.+|.+
T Consensus 14 ~~~~~ke~D~~Fe~~k~----~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~~--ee~t---~L~kals~ 84 (218)
T cd07663 14 LFSGVKEVDEFFEQEKT----FLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVAA--EEPT---VIKKYLLK 84 (218)
T ss_pred HHhccccchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cccc---hHHHHHHH
Confidence 34567775 45533322 234445555555555555555433333334557777766532 2221 13467788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHH
Q 003309 81 FTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHS 160 (832)
Q Consensus 81 f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~ 160 (832)
+++....+...+...-.+....+.++|..++.. +..+|+.=-+=-++-..|+.|-....+.+ -+...+.+++..+.+
T Consensus 85 lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~-~~A~K~ll~rR~ral~~~e~A~~~L~KaR--~k~kev~~aE~~~~e 161 (218)
T cd07663 85 VAELFEKLRKVEDRVASDQDLKLTELLRYYMLN-IEAAKDLLYRRARALADYENSNKALDKAR--LKSKDVKQAEAHQQE 161 (218)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHH
Confidence 888887777777766666666777777766543 33333222111222334444332222221 123446678888999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 161 ARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (832)
Q Consensus 161 ~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 211 (832)
+.+.|.+.+---=..|..++.++--+|=..++.|+..+...-+..++++..
T Consensus 162 a~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~~ 212 (218)
T cd07663 162 CCQKFEKLSESAKQELISFKRRRVAAFRKNLIEMTELEIKHAKNNVSLLQS 212 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998777777888887777777788888888887777777766643
No 243
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.66 E-value=1.8e-05 Score=90.16 Aligned_cols=65 Identities=26% Similarity=0.305 Sum_probs=60.9
Q ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 766 INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNR-EGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 766 vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~-~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
.|.+|..|+|+||+|+..+..++++.||.+|+|++.+|. .|+||||-|+.+|+ .+++.+||.+|.
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~--idca~lLL~~g~ 110 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGN--IDCASLLLSKGR 110 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhch--HHHHHHHHhcCC
Confidence 678999999999999999999999999999999999996 59999999999999 999999998773
No 244
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=97.65 E-value=0.024 Score=57.44 Aligned_cols=180 Identities=15% Similarity=0.126 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~ 102 (832)
++.++..|+++.+.+..++..-.+...+...|+.++..+++... . .++..|.++++....+...+...-.+-.-.
T Consensus 33 l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~--t---~L~~~ls~lae~~ek~~~l~~r~A~~d~l~ 107 (219)
T cd07621 33 LVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEP--T---PLDKFLLKVAETFEKLRKLEGRVASDEDLK 107 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--c---hHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 34444445555555555554433333345578888888877532 1 234667888888777776666665555556
Q ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCC-chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003309 103 LNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT-KTDVAAILEEELHSARSAFEQARFSLVTALSNVEA 181 (832)
Q Consensus 103 ~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k-~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~ 181 (832)
+..+|..++. .+...|.-|......|-...+-...+.|++ .+..+.+++.....+++.|.+.+---=..|..++.
T Consensus 108 L~e~L~~Y~r----~~~A~K~~l~rR~ral~~~q~A~k~L~KaR~k~~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~ 183 (219)
T cd07621 108 LSDTLRYYMR----DTQAAKDLLYRRLRCLANYENANKNLEKARAKNKDVHAAEAAQQEACEKFESMSESAKQELLDFKT 183 (219)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666544 344444455544433322222222232222 34567788889999999999998666677888888
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 182 KKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (832)
Q Consensus 182 ~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 211 (832)
++--+|=..++.|...+...-+..++++.+
T Consensus 184 ~Rv~~fk~~lve~aE~~ik~Ak~~~~~l~~ 213 (219)
T cd07621 184 RRVAAFRKNLVELAELEIKHAKAQIQLLKN 213 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888777777766644
No 245
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.64 E-value=0.00021 Score=63.44 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=30.7
Q ss_pred CCcceEEEecCC--ceEEEEeCCHHHHHHHHHHHHH
Q 003309 392 DLRFCFRIISPT--KNYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 392 ~r~~~F~I~t~~--rt~~lqA~s~~e~~~Wi~ai~~ 425 (832)
.+.+||-|-+.. .+.+|..|+..|+..|..||+.
T Consensus 72 ~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 72 QRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 577999999887 5899999999999999999974
No 246
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=97.57 E-value=0.008 Score=60.27 Aligned_cols=173 Identities=17% Similarity=0.243 Sum_probs=109.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHH
Q 003309 18 GLEESAEVLRE---RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 18 ~~E~~i~~l~~---~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
+||.+|+.|++ .+..++++.+.+...+-.....+.++.++|..+..-... +.- -+..-++..+-+..--..
T Consensus 126 ElEaQie~Lrd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFadLs~K~~e-lq~-----eft~nseTqr~l~knget 199 (341)
T KOG3876|consen 126 ELEAQIEVLRDTKRKYESVLALARAFSHHLTQMVETQHALGDSFADLSQKSPE-LQE-----EFTYNSETQRLLGKNGET 199 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHH-HHH-----HhCcCHHHHHHHhhhHHH
Confidence 57777777766 466667777776665555555677888888776542111 100 011113444444444344
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccC--Cch--hHHhHHHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKG--TKT--DVAAILEEELHSARSAFEQARF 170 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~--k~~--~~~~e~~~~l~~~r~~f~~~sl 170 (832)
|+ .+-+.|+..+..+++.-|..--..-++||.++.+||+...-...+.-. ..+ ..+.++...+.+.|..|++..-
T Consensus 200 Ll-~alnfFIsSvnTl~nkTi~DTL~Ti~qyEsARiEyDayR~Dle~~~l~P~~~~t~~~le~aq~~~q~hkekYeKlrn 278 (341)
T KOG3876|consen 200 LL-GALNFFISSVNTLVNKTIEDTLMTIKQYESARIEYDAYRTDLEELTLGPRDALTKNLLEGAQEKFQAHKEKYEKLRN 278 (341)
T ss_pred HH-HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHhcCCccccccccccHHHHHHHHHHHHHHHHhhh
Confidence 43 566778888888888888887888888999999998877776555221 111 1234555667788889999998
Q ss_pred HHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHH
Q 003309 171 SLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQG 205 (832)
Q Consensus 171 d~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g 205 (832)
|...+|.-+++.+ +..|+.|+..||.+
T Consensus 279 DvaiKmkfLeENr--------IkVmh~QL~llhnA 305 (341)
T KOG3876|consen 279 DVAIKMKFLEENR--------IKVMHKQLELLHNA 305 (341)
T ss_pred hHHHHHHHHHhhh--------HHHHHHHHHHHHHH
Confidence 8888887776543 34455565555554
No 247
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.57 E-value=0.00026 Score=59.99 Aligned_cols=86 Identities=19% Similarity=0.311 Sum_probs=59.3
Q ss_pred eEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccc
Q 003309 294 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 373 (832)
Q Consensus 294 ~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (832)
++.|.+.||.+ . .++||=++|.+...|+|.+.......
T Consensus 2 l~~g~v~Kr~g-l--f~kkR~LiLTd~PrL~yvdp~~~~~K--------------------------------------- 39 (89)
T cd01262 2 LKIGAVKKRKG-L--FAKKRQLILTNGPRLIYVDPVKKVVK--------------------------------------- 39 (89)
T ss_pred ceeeeeeehhc-c--ccceeeEEEecCceEEEEcCCcCeEE---------------------------------------
Confidence 57899999955 3 57999999998888888766433211
Q ss_pred cccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHH
Q 003309 374 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 374 ~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
++|.......++...+ ...|.|.||+|+|+|. +-+.....|+.+|+.+
T Consensus 40 -geIp~s~~~l~v~~~~---~~~F~I~Tp~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 40 -GEIPWSDVELRVEVKN---SSHFFVHTPNKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred -eEecccccceEEEEec---CccEEEECCCceEEEE-CCCCCHHHHHHHHHHH
Confidence 2233322112211111 2469999999999995 6678899999999875
No 248
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.53 E-value=0.055 Score=55.82 Aligned_cols=178 Identities=13% Similarity=0.189 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHH
Q 003309 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVL 95 (832)
Q Consensus 16 i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l 95 (832)
+..|++.+..+++...+++|.-..|.+. ...|...+...+....+ ++..|..|+.++..+.......
T Consensus 63 ~d~L~~~L~~ieki~~Rl~kr~~ey~~~-------~~~fgk~~~lws~~E~~------L~~~L~~~a~~~d~~~~~~~~~ 129 (243)
T cd07666 63 VEAFSQKINVLDKISQRIYKEQREYFEE-------LKEYGPIYTLWSASEEE------LADSLKGMASCIDRCCKATDKR 129 (243)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHhccchh------hhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433332 33455555554443222 3467899999998877777777
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 96 RSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTA 175 (832)
Q Consensus 96 ~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~ 175 (832)
..+....|..||..++-- +..+|..=+.=+..|.+|+...+-....+ +++ .++..++.+....-+.++-+.=.-
T Consensus 130 ~~~l~~~f~~~Lkeyv~y-~~slK~vlk~R~~~Q~~le~k~e~l~k~~----~dr-~~~~~ev~~~e~kve~a~~~~k~e 203 (243)
T cd07666 130 MKGLSEQLLPVIHEYVLY-SETLMGVIKRRDQIQAELDSKVEALANKK----ADR-DLLKEEIEKLEDKVECANNALKAD 203 (243)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778999999998543 33334322222688888887666544432 222 233444444444444445555567
Q ss_pred HHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003309 176 LSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (832)
Q Consensus 176 l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l 212 (832)
+...+..+.-+|-..+++|+..|..+++++...++.+
T Consensus 204 ~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~~~~We~f 240 (243)
T cd07666 204 WERWKQNMQTDLRSAFTDMAENNISYYEECLATWESF 240 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888999999999999999999998876654
No 249
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.52 E-value=0.00013 Score=76.44 Aligned_cols=56 Identities=21% Similarity=0.270 Sum_probs=53.5
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 775 TPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 775 TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
--|..||+.|..+.|+.|++.|.++|.+|....+||.+|...|| ..+|++|+++||
T Consensus 38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGH--e~vvklLLenGA 93 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGH--EDVVKLLLENGA 93 (516)
T ss_pred HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCc--HHHHHHHHHcCC
Confidence 35889999999999999999999999999999999999999999 899999999986
No 250
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.51 E-value=0.00084 Score=58.86 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=30.9
Q ss_pred cceEEEecCC---ceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 394 RFCFRIISPT---KNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 394 ~~~F~I~t~~---rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
+++|.|++.+ ++|.|||.|+++.+.||++|+.+|
T Consensus 59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 7999997754 799999999999999999999886
No 251
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=97.50 E-value=6.9e-05 Score=82.18 Aligned_cols=107 Identities=21% Similarity=0.413 Sum_probs=67.2
Q ss_pred cCCcceeEEEEEEecCCC--CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCC
Q 003309 288 KGKVQTIRQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG 365 (832)
Q Consensus 288 ~~~~~~~k~G~L~K~~~~--~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (832)
++.+.+..+|-|.-+.|. +.+.|+-|||+|.+..+.|...+... .
T Consensus 730 n~~gqp~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~---------------------------------d 776 (851)
T KOG3723|consen 730 NQDGQPLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKD---------------------------------D 776 (851)
T ss_pred cCCCCchhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCC---------------------------------C
Confidence 344566789998654344 45789999999996555542211110 0
Q ss_pred CCCcccccccccccccc-ccc-cC--CcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 366 VHDEKSAARHTVNLLTS-TIK-VD--ADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 366 ~~~~~~~~~~~i~l~~~-~v~-~~--~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
. +.. .|++... +|+ .. .....-+-.|||.|.++||+|.|.+++..++|++.++-|.+.+-..
T Consensus 777 S-~~~-----~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~IavAHa~~r 842 (851)
T KOG3723|consen 777 S-DDC-----PIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAVAHAKER 842 (851)
T ss_pred C-CCC-----CccHHHhhhHHHHHhhhhhcccchhhheeecCceEEeecccccCHHHHHHHHHHHHHHHHHH
Confidence 0 111 1333211 122 11 0111224579999999999999999999999999999888766543
No 252
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.49 E-value=0.00098 Score=59.09 Aligned_cols=94 Identities=16% Similarity=0.245 Sum_probs=61.2
Q ss_pred eEEEEEEecCCCCCCCC-ceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccc
Q 003309 294 IRQGYLSKRSSNLRGDW-KRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (832)
Q Consensus 294 ~k~G~L~K~~~~~~~~W-krRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (832)
+.+|=|.+.+.+ ++| +.|+|+|-+..++|+.++.-. + ..-.
T Consensus 3 i~~Gel~~~s~~--~g~~q~R~~FLFD~~LI~CKkd~~r---~---------------------------------~~~~ 44 (109)
T cd01224 3 FLQGEATRQKQN--KGWNSSRVLFLFDHQMVLCKKDLIR---R---------------------------------DHLY 44 (109)
T ss_pred eEeeeEEEEecc--cCCcccEEEEEecceEEEEeccccc---C---------------------------------CcEE
Confidence 578888887532 223 358999996666665443211 0 0112
Q ss_pred ccccccccccccccCCcccCC------cceEEEecCC--ceEEEEeCCHHHHHHHHHHHHH
Q 003309 373 ARHTVNLLTSTIKVDADQSDL------RFCFRIISPT--KNYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 373 ~~~~i~l~~~~v~~~~~~~~r------~~~F~I~t~~--rt~~lqA~s~~e~~~Wi~ai~~ 425 (832)
..+.|++..+.|...++..+. ++.|.|+... +.|.|+|.|+++...||+||..
T Consensus 45 yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 45 YKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 235566766666543333222 6889999866 6799999999999999999863
No 253
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.49 E-value=0.00078 Score=58.81 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=35.4
Q ss_pred cccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 389 DQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 389 ~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
+...-+++|.|+++.+++.+||+|+++..+||..|+.|+
T Consensus 60 D~~~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 60 DRENAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred CCcCcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHh
Confidence 444568999999999999999999999999999999987
No 254
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=97.45 E-value=0.051 Score=54.51 Aligned_cols=196 Identities=14% Similarity=0.103 Sum_probs=118.1
Q ss_pred cccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHH
Q 003309 4 NKLDDS-PMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFT 82 (832)
Q Consensus 4 ~~l~DS-P~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~ 82 (832)
.+++|+ |+|-....+ ++.++..|+++...+..++............|+.++..++.. + .. -+...|.+++
T Consensus 16 ~~~kd~D~wFe~ek~~----l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~-e-~t---~L~~~l~~la 86 (218)
T cd07662 16 SGVKDVDDFFEHERTF----LLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQ-D-ST---DICKFFLKVS 86 (218)
T ss_pred hcccchhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c-ch---hHHHHHHHHH
Confidence 455664 555444333 345556666666666666665444444556788888877764 1 11 1345677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHH
Q 003309 83 IALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSAR 162 (832)
Q Consensus 83 ~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r 162 (832)
+....+...+...-..-...+..-|..++.. +..+|+.=-+=-++-..|+.|-....+.+-+ ...+.+++..+.+++
T Consensus 87 ev~eki~~l~~~~A~~e~l~L~e~L~~Y~r~-~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~--~kev~~aE~~~~~a~ 163 (218)
T cd07662 87 ELFDKTRKIEARVAADEDLKLSDLLKYYLRE-SQAAKDLLYRRSRSLVDYENANKALDKARAK--NKDVLQAETTQQLCC 163 (218)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHH
Confidence 8777777766666554445555555555432 3333332222222233444443332222211 234577888899999
Q ss_pred HHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 163 SAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (832)
Q Consensus 163 ~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 211 (832)
+.|.+.|---=..|..++.++-.+|=..|+.|+..+....+.-++++..
T Consensus 164 ~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~ 212 (218)
T cd07662 164 QKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQS 212 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999776677777877777777778888888777777777776644
No 255
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=97.43 E-value=0.00021 Score=78.27 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=75.2
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCcHHHHHHHcCCCcH
Q 003309 744 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD--PRAVNREGKTSLELAVESNFADS 821 (832)
Q Consensus 744 Lh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~~~~g~TpL~~A~~~g~~d~ 821 (832)
|..|+..+.+--++-+-.+|.++-.++..-.+.||+|+..|+.++|+++|++|.. +++.|..|.|+||-|+..++ .
T Consensus 870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~--r 947 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN--R 947 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc--h
Confidence 5567777776666666677888888899999999999999999999999999865 56788999999999999988 8
Q ss_pred HHHHHHhhCCC
Q 003309 822 EVLAILSDSHG 832 (832)
Q Consensus 822 ~iv~lLl~~gg 832 (832)
.|..+|+++|+
T Consensus 948 ~vc~~lvdaga 958 (1004)
T KOG0782|consen 948 AVCQLLVDAGA 958 (1004)
T ss_pred HHHHHHHhcch
Confidence 89999999885
No 256
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=97.37 E-value=0.00011 Score=82.27 Aligned_cols=96 Identities=24% Similarity=0.495 Sum_probs=67.8
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
....|.||+.+-++. .+.|+|||||++ +|...||+.+.+. +.
T Consensus 247 e~~ekSgy~~~~~s~-~k~lkrr~~v~k-~gqi~~y~~~~~~-----------------------------------~~- 288 (936)
T KOG0248|consen 247 ETMEKSGYWTQLTSR-IKSLKRRYVVFK-NGQISFYRKHNNR-----------------------------------DE- 288 (936)
T ss_pred chhhcccchhcchHH-HHHHHhHheeec-cceEEEEEcCCCc-----------------------------------cc-
Confidence 445789999988643 468999999999 6666666665431 11
Q ss_pred ccccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.+...+++...++. ....-.+.|++++...+|+|.++|+--..+|+..++.+|.
T Consensus 289 -~p~s~~d~~s~~~~---~~~~~s~~fqli~~t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 289 -EPASKIDIRSVTKL---EQQGAAYAFQLITSTDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred -cccCccccccccee---eccchhHHhhhhhhceeEEEeccChhhhhhhHHHHHHHHH
Confidence 11123344332221 1223357899999999999999999999999999999986
No 257
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=97.36 E-value=0.12 Score=54.27 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCC------CCCccccCchHHHHHHHHHHHHHHHHHHH
Q 003309 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHN------DPISVAFGGPVMTKFTIALREIGTYKEVL 95 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~------~~~~~~~~~~~l~~f~~~l~ei~~~~~~l 95 (832)
+++.+..+++.=++.|+.+..-+.+-...+..|+..|..+..... +..... +..++..+-..+..++..|..+
T Consensus 6 ~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s-~~~aw~~i~~e~~~~a~~H~~~ 84 (251)
T cd07653 6 QFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFS-SVKAFRSILNEVNDIAGQHELI 84 (251)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544444445677777766543211 111111 1245666667777778889999
Q ss_pred HHHHHHHHHHHHHHHhHhh---------------------hHHHHHHHHHHHHHhHHHHHHHHHHHhcccCC--chhHHh
Q 003309 96 RSQVEHMLNDRLLQYVNID---------------------LHEVKEARKCFDKASLLYDQAREKFLSLRKGT--KTDVAA 152 (832)
Q Consensus 96 ~~~~~~~~~~pL~~f~~~d---------------------i~~~ke~rk~fek~~~~yd~al~k~~~~~k~k--~~~~~~ 152 (832)
...+...+..||..|+++- ++.+..+|+.|++...+.+.+..++....+.. .+..++
T Consensus 85 a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~e 164 (251)
T cd07653 85 AENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVE 164 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHH
Confidence 8889999999998886542 23455566666666666666666665443221 112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003309 153 ILEEELHSARSAFEQARFSLVTALSNVEA 181 (832)
Q Consensus 153 e~~~~l~~~r~~f~~~sld~~~~l~~~~~ 181 (832)
-+...+......+..+-=+|...|..+..
T Consensus 165 K~~~k~~k~~~~~~~a~~~Y~~~l~~~N~ 193 (251)
T cd07653 165 KAKANANLKTQAAEEAKNEYAAQLQKFNK 193 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555566665555543
No 258
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=97.30 E-value=0.083 Score=52.91 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCC-CCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 30 SLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGH-NDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLL 108 (832)
Q Consensus 30 l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~-~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~ 108 (832)
++.++..+++|...+.....+...|.++|...+..- ........+|.+|.++..-.+.|+..+..+...+...++.||+
T Consensus 24 ~~d~v~ka~K~~saL~a~~~A~~~f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe 103 (231)
T cd07643 24 WEDFVSKATKLHSQLRATIVATSAFLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQ 103 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 555666666666666666666788999998876421 1111123467899999999999999999999999999999999
Q ss_pred HHhHhhhHHH----HHHHHHHHHHhHHHHHHHH
Q 003309 109 QYVNIDLHEV----KEARKCFDKASLLYDQARE 137 (832)
Q Consensus 109 ~f~~~di~~~----ke~rk~fek~~~~yd~al~ 137 (832)
+=++++.+.+ |+..|.|++.+.+.-.+..
T Consensus 104 ~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~ 136 (231)
T cd07643 104 EKIEEWKKVANQLDKDHAKEYKKARQEIKKKSS 136 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999888 7888889999887764444
No 259
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=97.28 E-value=0.0035 Score=72.96 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=32.8
Q ss_pred CCcceEEEec-CCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 392 DLRFCFRIIS-PTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 392 ~r~~~F~I~t-~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
+.+|.|-|.+ ++|.+.|||.|++||+.||.+||.++.
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 453 NAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 4689999965 679999999999999999999998864
No 260
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.28 E-value=8.1e-05 Score=88.15 Aligned_cols=98 Identities=27% Similarity=0.383 Sum_probs=66.7
Q ss_pred CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC------CCC
Q 003309 730 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR------AVN 803 (832)
Q Consensus 730 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~------~~~ 803 (832)
+-....-|.+|.-.+|+++..|..-.+.+.+..|..++.+|..||||||+|+..|+..++..|+..|++.. ..+
T Consensus 598 ~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~ 677 (975)
T KOG0520|consen 598 GSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPET 677 (975)
T ss_pred ccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCC
Confidence 33344456667777777554444334444446678888888888888888888888888888887766543 234
Q ss_pred CCCCcHHHHHHHcCCCcHHHHHHHhh
Q 003309 804 REGKTSLELAVESNFADSEVLAILSD 829 (832)
Q Consensus 804 ~~g~TpL~~A~~~g~~d~~iv~lLl~ 829 (832)
..|.|+-.+|...|+ ..+--+|-+
T Consensus 678 p~g~ta~~la~s~g~--~gia~~lse 701 (975)
T KOG0520|consen 678 PGGKTAADLARANGH--KGIAGYLSE 701 (975)
T ss_pred CCCCchhhhhhcccc--cchHHHHhh
Confidence 568888888888887 566665543
No 261
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.25 E-value=0.0029 Score=58.49 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=32.0
Q ss_pred CcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 393 LRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 393 r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
-.++|.|.+++|++-|.|+|.++.+-|+.+|+..+
T Consensus 87 ~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 87 HNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred cceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999998655
No 262
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=97.21 E-value=0.17 Score=53.59 Aligned_cols=152 Identities=13% Similarity=0.149 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~ 102 (832)
++.|.++++.-++.|+.+.+-+.+-..-+..|+..|..+.....+.....-..+++..+-.....+...|..|..++. .
T Consensus 7 ~~~L~~r~k~g~~~~~el~~f~keRa~IEe~Yak~L~kLakk~~~~~~~gt~~~~w~~i~~~~e~~a~~H~~l~~~L~-~ 85 (261)
T cd07648 7 FDVLYHNMKHGQIAVKELADFLRERATIEETYSKALNKLAKQASNSSQLGTFAPLWLVLRVSTEKLSELHLQLVQKLQ-E 85 (261)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 356777777777788877777666666678888888877543222211222234566777777778888888888875 5
Q ss_pred HHHHHHHHhHhhhHHHHHHH-----------------HHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHH
Q 003309 103 LNDRLLQYVNIDLHEVKEAR-----------------KCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAF 165 (832)
Q Consensus 103 ~~~pL~~f~~~di~~~ke~r-----------------k~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f 165 (832)
++.+|..|+.+--+.-|..+ +..+++..+|+++-..+-.+.+... ...++..++...
T Consensus 86 ~~~~l~~~~~~~~k~rK~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~------s~k~~eK~~~K~ 159 (261)
T cd07648 86 LIKDVQKYGEEQHKKHKKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARCLELERLRRENA------SPKEIEKAEAKL 159 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CHHHHHHHHHHH
Confidence 77888888765444433332 2235556666655555544433221 122334444444
Q ss_pred HHHHHHHHHHHHhhhh
Q 003309 166 EQARFSLVTALSNVEA 181 (832)
Q Consensus 166 ~~~sld~~~~l~~~~~ 181 (832)
..+.-||-..+..++.
T Consensus 160 ~ka~~~Y~~~v~~~~~ 175 (261)
T cd07648 160 KKAQDEYKALVEKYNN 175 (261)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555566555555543
No 263
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=97.19 E-value=0.00039 Score=60.36 Aligned_cols=97 Identities=18% Similarity=0.363 Sum_probs=62.6
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccc
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (832)
.+.+||+.|-++.+...|+||||-|-+|.+=+|-.+...++ .++
T Consensus 3 cIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~~------------------eLi------------------ 46 (116)
T cd01240 3 CIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANKP------------------ELI------------------ 46 (116)
T ss_pred eEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccccCC------------------cEE------------------
Confidence 47899999999888889999999999877655422211110 000
Q ss_pred ccccccccccccccCCcccCCcceEEEecC-CceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 373 ~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~-~rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
....| ...+ ++.....-..|..|... ++.++|+++++-+..+|..-|+.+-..
T Consensus 47 ~M~~i--~~V~--~e~~~iK~~~CI~ik~k~~~k~vlt~~d~i~l~qW~~elr~a~r~ 100 (116)
T cd01240 47 TMDQI--EDVS--VEFQQIKEENCILLKIRDEKKIVLTNSDEIELKQWKKELRDAHRE 100 (116)
T ss_pred Eeehh--hhcc--hhheeeccCceEEEEEcCCceEEEecCCcHHHHHHHHHHHHHHHH
Confidence 00001 1011 00011122478888765 578999999999999999999888643
No 264
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=97.19 E-value=0.061 Score=56.81 Aligned_cols=92 Identities=9% Similarity=0.096 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 24 EVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHML 103 (832)
Q Consensus 24 ~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~ 103 (832)
+.|-..++.=...|+.+.+-+.+-...+..|+..|..+.....+.....-..+++..+-.....+.+.|..|...+. .+
T Consensus 8 ~~l~~r~k~g~~~~kel~~flkeRa~IEe~Yak~L~klak~~~~~~e~Gtl~~~w~~~~~~~E~~a~~H~~l~~~L~-~~ 86 (261)
T cd07674 8 DVLYHNMKHGQISTKELADFVRERAAIEETYSKSMSKLSKMASNGSPLGTFAPMWEVFRVSSDKLALCHLELMRKLN-DL 86 (261)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45666677777778887777777666678899999888764444333333445778888888888888888888887 45
Q ss_pred HHHHHHHhHhhhH
Q 003309 104 NDRLLQYVNIDLH 116 (832)
Q Consensus 104 ~~pL~~f~~~di~ 116 (832)
+.++..|.++.++
T Consensus 87 ~~~i~~~~~~~~k 99 (261)
T cd07674 87 IKDINRYGDEQVK 99 (261)
T ss_pred HHHHHHHHHHHHH
Confidence 5788888765433
No 265
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=97.17 E-value=0.23 Score=51.73 Aligned_cols=94 Identities=10% Similarity=0.064 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~ 102 (832)
++.|.++++.-++.|+.+..-..+-...+..|+..|..+...........-..+++..+-.....++..|..+..++...
T Consensus 7 ~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~gsl~~a~~~i~~e~e~~a~~H~~~a~~L~~~ 86 (236)
T cd07651 7 FDVIQTRIKDSLRTLEELRSFYKERASIEEEYAKRLEKLSRKSLGGSEEGGLKNSLDTLRLETESMAKSHLKFAKQIRQD 86 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777877777666666667888998888765322211111133567777788888888999999999999
Q ss_pred HHHHHHHHhHhhhH
Q 003309 103 LNDRLLQYVNIDLH 116 (832)
Q Consensus 103 ~~~pL~~f~~~di~ 116 (832)
+..||..|.+.--+
T Consensus 87 v~~~l~~~~~~~~~ 100 (236)
T cd07651 87 LEEKLAAFASSYTQ 100 (236)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999666433
No 266
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=97.15 E-value=0.00041 Score=75.10 Aligned_cols=94 Identities=26% Similarity=0.445 Sum_probs=69.9
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccc
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (832)
+...|+|.|+ -+...+|+-|||+|. +|-|.||++..+...|.
T Consensus 24 ~e~~G~lskw-tnyi~gwqdRyv~lk-~g~Lsyykse~E~~hGc------------------------------------ 65 (611)
T KOG1739|consen 24 VERCGVLSKW-TNYIHGWQDRYVVLK-NGALSYYKSEDETEHGC------------------------------------ 65 (611)
T ss_pred hhhcceeeee-ecccccccceEEEEc-ccchhhhhhhhhhhccc------------------------------------
Confidence 3468999999 455668999999999 66677777776644432
Q ss_pred ccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 373 ~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
++.|.+....+.....+ . ..|.|.+..-.+++.|.....++.|+.+|+--..
T Consensus 66 -Rgsi~l~ka~i~ahEfD-e--~rfdIsvn~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 66 -RGSICLSKAVITAHEFD-E--CRFDISVNDNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred -ceeeEeccCCcccccch-h--heeeeEeccceeeehhcCcHHHHHHHHHHHHHhh
Confidence 34566666666653332 2 3399999999999999999999999999986543
No 267
>PLN02866 phospholipase D
Probab=97.06 E-value=0.0026 Score=76.57 Aligned_cols=36 Identities=25% Similarity=0.517 Sum_probs=33.2
Q ss_pred CCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 392 DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 392 ~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
.-+|.|.|.+.+|++.|.|.|...+..|+.+|+.+.
T Consensus 272 ~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~ 307 (1068)
T PLN02866 272 PLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAG 307 (1068)
T ss_pred CCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHH
Confidence 447899999999999999999999999999999875
No 268
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.99 E-value=0.0052 Score=56.15 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=26.9
Q ss_pred CCcceEEEe------cCCceEEEEeCCHHHHHHHHHHHH
Q 003309 392 DLRFCFRII------SPTKNYTLQAESALDQMDWIEKIT 424 (832)
Q Consensus 392 ~r~~~F~I~------t~~rt~~lqA~s~~e~~~Wi~ai~ 424 (832)
..++.|.|. ...+.+.|+|+|+.|+..||+||.
T Consensus 81 ~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 81 GRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 347889996 233679999999999999999873
No 269
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=96.98 E-value=0.00063 Score=81.44 Aligned_cols=87 Identities=29% Similarity=0.223 Sum_probs=74.8
Q ss_pred cccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHH
Q 003309 708 SSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAM 787 (832)
Q Consensus 708 ~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~ 787 (832)
...++.+...+......+|+..|+++|..|..|+||||.+...|+...+.+|+++||+.++.|..|.+||++|....+.+
T Consensus 657 ~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~d 736 (785)
T KOG0521|consen 657 CSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANAD 736 (785)
T ss_pred cchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcccc
Confidence 34455566666677777888999999999999999999999999999999999999999999999999999998877777
Q ss_pred HHHHHHh
Q 003309 788 FAKLLLT 794 (832)
Q Consensus 788 ~v~~Ll~ 794 (832)
++-+|.-
T Consensus 737 ~~~l~~l 743 (785)
T KOG0521|consen 737 IVLLLRL 743 (785)
T ss_pred HHHHHhh
Confidence 7665543
No 270
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.95 E-value=0.00048 Score=81.80 Aligned_cols=93 Identities=20% Similarity=0.198 Sum_probs=78.3
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHH
Q 003309 736 DDLEGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPLHRCILRGKAMFAKLLLT-RGADPRAVNREGKTSLELA 813 (832)
Q Consensus 736 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~~~~g~TpL~~A 813 (832)
....|+|.||+++..+..-+++.+++- |...+..|..|...+|+ |..++.+++-+|+. .|..++++|..|+||||+|
T Consensus 570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA 648 (975)
T KOG0520|consen 570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA 648 (975)
T ss_pred CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence 345789999999999999999999985 66666777777778888 56677887777765 5899999999999999999
Q ss_pred HHcCCCcHHHHHHHhhCC
Q 003309 814 VESNFADSEVLAILSDSH 831 (832)
Q Consensus 814 ~~~g~~d~~iv~lLl~~g 831 (832)
+..|+ ..++.-|.+.|
T Consensus 649 a~~G~--e~l~a~l~~lg 664 (975)
T KOG0520|consen 649 AFRGR--EKLVASLIELG 664 (975)
T ss_pred hhcCH--HHHHHHHHHhc
Confidence 99999 88998888655
No 271
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.94 E-value=0.65 Score=48.41 Aligned_cols=156 Identities=12% Similarity=0.155 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~ 102 (832)
.+.|-++++.=++.|+.+.+-+.+-...+..|+..|..+.....+.....-..+++..|-.....++..|..+..++...
T Consensus 7 ~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLak~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~la~~L~~~ 86 (239)
T cd07647 7 FDTLLQRLKEGKKMCKELEDFLKQRAKAEEDYGKALLKLSKSAGPGDEIGTLKSSWDSLRKETENVANAHIQLAQSLREE 86 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777666665667888888888765432222222223456677777777777788887777775
Q ss_pred HHHHHHHHhHhhh---------------------HHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHH
Q 003309 103 LNDRLLQYVNIDL---------------------HEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSA 161 (832)
Q Consensus 103 ~~~pL~~f~~~di---------------------~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~ 161 (832)
+ ..|..|.+.-. +.+..+|++|+..-.+.+.+..+|...+....+..+.-+...+..+
T Consensus 87 v-~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~ 165 (239)
T cd07647 87 A-EKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQC 165 (239)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 4 55666654322 3344556666666666666666665555433333333444445555
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 003309 162 RSAFEQARFSLVTALSNV 179 (832)
Q Consensus 162 r~~f~~~sld~~~~l~~~ 179 (832)
+..-..+-=+|-..+..+
T Consensus 166 ~~~~~~a~~~Y~~~v~~l 183 (239)
T cd07647 166 KTSAEEADSAYKSSIGCL 183 (239)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 544555555565554444
No 272
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=96.90 E-value=0.13 Score=51.60 Aligned_cols=184 Identities=12% Similarity=0.131 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCC--CCCCccccCchHHHHHHHHHHHHH
Q 003309 12 FRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGH--NDPISVAFGGPVMTKFTIALREIG 89 (832)
Q Consensus 12 FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~--~~~~~~~~~~~~l~~f~~~l~ei~ 89 (832)
|...++.+++.|..|........|.+..... +.-..+..+|..++... +......-+..+|...|+.+..|+
T Consensus 9 f~~f~~~md~svk~l~~~~~~~~kk~~~~~k------keyqk~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~Ig 82 (199)
T cd07626 9 FKKFVKSMDDSVKNLINIAQEQAKKHQGPYK------KEYQKIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEIG 82 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554444444422111 01134445555554321 111122234567888999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHH
Q 003309 90 TYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQAR 169 (832)
Q Consensus 90 ~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~s 169 (832)
..+..--.+.-..+.+-|..+ ++.+-..+.-|.. .-.++.|.....+.....++ ...++.+.++.|...+
T Consensus 83 ~l~~eQa~~D~~~l~E~L~eY----~gll~~~pdi~~~----~k~al~K~kE~~r~~~egk~--~~~e~~ev~~r~d~IS 152 (199)
T cd07626 83 ELFAEQPKHDLIPLLDGLHEY----KGLLSTFPDIIGV----HKGAVQKVKECERLVDEGKM--SSAELEEVKRRTDVIS 152 (199)
T ss_pred HHHHHhhHhhHHHHHHHHHHH----HhHHHhhhHHHHH----HHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHH
Confidence 887655433333333333222 2221111111111 11111111111000000000 2236667889999999
Q ss_pred HHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 170 FSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (832)
Q Consensus 170 ld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 211 (832)
.-....|+.++..+..+|-..+..|+..|..||++-.+-+++
T Consensus 153 ~~~~aE~~~F~~eRv~Dfk~~m~~yLe~qI~fyqqI~~kl~~ 194 (199)
T cd07626 153 YALLAEINHFHRERVRDFKSMMRNYLQQQIEFYQKIAAKLEE 194 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999988888899999999999999999987666543
No 273
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=96.85 E-value=0.44 Score=49.57 Aligned_cols=107 Identities=18% Similarity=0.128 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC----CCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 24 EVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG----GHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQV 99 (832)
Q Consensus 24 ~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~----~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~ 99 (832)
+.|...++.=.+.|+.+++-+.+-...+..|+..|..+.. ...+.. .-...++..|......+...|..+..++
T Consensus 8 ~~l~~~~~~G~~~ckel~~f~kERa~IE~~YAK~L~kLa~k~~k~~~~~~--Gtl~~aw~~~~~e~e~~a~~H~~la~~L 85 (239)
T cd07658 8 EELRRYVKQGGDFCKELATVLQERAELELNYAKGLSKLSGKLSKASKSVS--GTLSSAWTCVAEEMESEADIHRNLGSAL 85 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666555555556777877776642 111211 2234567888888899999999999999
Q ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHH
Q 003309 100 EHMLNDRLLQYVNIDLHEVKEARKCFDKASLLY 132 (832)
Q Consensus 100 ~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~y 132 (832)
...+..||..|+++..+.-|+....|++++...
T Consensus 86 ~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~ 118 (239)
T cd07658 86 TEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLL 118 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999886555555555555555533
No 274
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=96.82 E-value=0.0049 Score=71.51 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=31.4
Q ss_pred ceEEEec---CCceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 395 FCFRIIS---PTKNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 395 ~~F~I~t---~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
|.|.|.. .++...|-|-|.+|...||+||+.||....
T Consensus 74 yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~ 113 (719)
T PLN00188 74 YVLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQHQ 113 (719)
T ss_pred EEEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhhc
Confidence 6677765 347899999999999999999999998653
No 275
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.82 E-value=0.78 Score=47.42 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 24 EVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHML 103 (832)
Q Consensus 24 ~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~ 103 (832)
+.|-..++.=.+.|+.+.+.+.+-...+..|+..|..+............+.+++..|-.....+...|..|...+...+
T Consensus 8 ~vl~~~~k~g~~~~~el~~fl~ERa~IEe~Yak~L~klak~~~~~~e~Gtl~~sw~~~~~e~E~~a~~H~~la~~L~~ev 87 (233)
T cd07649 8 EILLQKQLKGKQMQKEMAEFIRERIKIEEEYAKNLSKLSQSSLAAQEEGTLGEAWAQVKKSLADEAEVHLKFSSKLQSEV 87 (233)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666665555555567788888777543222222223446788899999999999999999999999
Q ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHhHHH
Q 003309 104 NDRLLQYVNIDLHEVKEARKCFDKASLLY 132 (832)
Q Consensus 104 ~~pL~~f~~~di~~~ke~rk~fek~~~~y 132 (832)
..||..|.++..+..+..-..|++++...
T Consensus 88 ~~~l~~f~~~~~k~~k~~e~~~~k~~K~~ 116 (233)
T cd07649 88 EKPLLNFRENFKKDMKKLDHHIADLRKQL 116 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986666666666666665544
No 276
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.77 E-value=0.15 Score=51.22 Aligned_cols=184 Identities=17% Similarity=0.200 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~ 101 (832)
.|+.+|.-+..|-..+.+++...+..+.+..+|..+...|.++..|....+.+++. ++++++++......+.+ ...
T Consensus 3 ~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~---i~~~L~kF~~~l~ei~~-~~~ 78 (200)
T cd07637 3 TIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEM---ISECLDKFGDSLQEMVN-YHM 78 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH---HHHHHHHHHHHHHHHHH-HHH
Confidence 57888899999999999999888888888999999999999998888777766664 56788888887666653 456
Q ss_pred HHHHHHHHHhHhhhHHHH-HHHHHHHHHhHHHHHHHHHH-HhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 102 MLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKF-LSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNV 179 (832)
Q Consensus 102 ~~~~pL~~f~~~di~~~k-e~rk~fek~~~~yd~al~k~-~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~ 179 (832)
.+...++..+.+-|..+. +--+.|...+..||.+..+| .++.|.......+ ..++.++-.....+
T Consensus 79 ~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~kk--~~~l~Ea~~~L~~~----------- 145 (200)
T cd07637 79 ILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRHK--PHEVEEATSTLTIT----------- 145 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHH-----------
Confidence 677777777777777663 56667999999999999998 6666643222212 12343332222221
Q ss_pred hhhchhhHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 003309 180 EAKKRFEFLEAVSGTMDAHLR-YFKQGYELLHQMEPYINQVLTYAQQS 226 (832)
Q Consensus 180 ~~~~~~e~l~~l~~~~~a~~~-ff~~g~~~~~~l~~~~~~l~~~~~~~ 226 (832)
+-.+....++|+.+... -.++.+++++.+-.|++...++.++-
T Consensus 146 ----Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG 189 (200)
T cd07637 146 ----RKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQG 189 (200)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 12556677777755433 34788888888888888877776553
No 277
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=96.68 E-value=0.14 Score=52.69 Aligned_cols=188 Identities=12% Similarity=0.088 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 20 EESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQV 99 (832)
Q Consensus 20 E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~ 99 (832)
++.++.....++.++...+.|..+.-+.++.++.|-+.|-.++.. .+-+. -+.++..||+..+-|+..-..+...+
T Consensus 138 leeLE~tae~Ykglveh~~~ml~a~y~lsqt~k~FGd~F~~i~vh--EpQq~--AsEAF~~Fgd~HR~ieK~g~~~~k~i 213 (429)
T KOG3651|consen 138 LEELEETAEFYKGLVEHFGDMLQAQYKLSQTQKEFGDIFCDIAVH--EPQQT--ASEAFSSFGDKHRMIEKKGSESAKPI 213 (429)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc--Ccchh--HHHHHHHHHHHHHHHHHhccchhhhh
Confidence 355666666777787777777766444333334444444333321 11111 23578999999999998877777666
Q ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhH----HhH--------------HHHHHHHH
Q 003309 100 EHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDV----AAI--------------LEEELHSA 161 (832)
Q Consensus 100 ~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~----~~e--------------~~~~l~~~ 161 (832)
... +.-|+.+++..|..-+-.-|+|-...-.|-+.--|...+- +.+. ++| .-.=-.++
T Consensus 214 kpm-lsDL~tYlnkaiPDTrLTikkYlDvKfeYLSYCLKvKEMD---DEE~~f~AlqEPLYRVeTGNYEYRliLRCRQea 289 (429)
T KOG3651|consen 214 KPM-LSDLQTYLNKAIPDTRLTIKKYLDVKFEYLSYCLKVKEMD---DEEVEFVALQEPLYRVETGNYEYRLILRCRQEA 289 (429)
T ss_pred hHH-HHHHHHHHhccCCcchhhhHHhhhhhHHHHHHHHhhhhcc---chhhceeeecCceeEeecCCeeeehhHHHHHHH
Confidence 554 4568888888888777677777666656655444422221 1110 000 01123578
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003309 162 RSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPY 215 (832)
Q Consensus 162 r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~ 215 (832)
|..|.+.+-|.+.+|..+..+.-.++..+|..++.....+++.+++.+.+...|
T Consensus 290 RarF~kmR~DVleKmELLdqKHv~Di~~qL~~l~~tmak~~~~c~~~L~~~~~f 343 (429)
T KOG3651|consen 290 RARFMKMRDDVLEKMELLDQKHVRDIAQQLAILAKTMAKCQQECAEILKERIDF 343 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999988888999999999999999999999998765433
No 278
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.68 E-value=1.1 Score=47.41 Aligned_cols=97 Identities=11% Similarity=0.131 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~ 102 (832)
++.|-..++.=...|+.+.+-+.+-...+..|+..|..+.....+.....-..+++..+-.....++..|..|..++..
T Consensus 14 ~~~L~~r~k~g~~~~kel~~f~keRa~iEe~Yak~L~kLak~~~~~~~~Gt~~~~~~~~~~e~e~~a~~H~~la~~L~~- 92 (269)
T cd07673 14 FDVLYHNMKHGQISTKELSDFIRERATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLANCHLELVRKLQE- 92 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3455556666666777777666665556778888888776543332222223455777777788888889999888885
Q ss_pred HHHHHHHHhHhhhHHHHH
Q 003309 103 LNDRLLQYVNIDLHEVKE 120 (832)
Q Consensus 103 ~~~pL~~f~~~di~~~ke 120 (832)
++.+|..|.++..+.-|.
T Consensus 93 ~~~~l~~~~~~~~k~rK~ 110 (269)
T cd07673 93 LIKEVQKYGEEQVKSHKK 110 (269)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 678899998766544443
No 279
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.68 E-value=0.012 Score=52.83 Aligned_cols=37 Identities=8% Similarity=0.331 Sum_probs=32.3
Q ss_pred CcceEEEecCC--ceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 393 LRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 393 r~~~F~I~t~~--rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
-.|+|.|++.+ ..|+|.|.|++++..||++|.-|+.+
T Consensus 75 ~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 75 WKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred eEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 46789999866 56999999999999999999988764
No 280
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=96.64 E-value=0.46 Score=47.52 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCC--ccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 24 EVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPI--SVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (832)
Q Consensus 24 ~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~--~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~ 101 (832)
+.|.++++.-+..|+.+.+-..+-...+..|+..|..+........ .+.-...++..+......+...+..+...+..
T Consensus 3 ~~l~~~~~~g~~~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~~~~~~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~ 82 (191)
T cd07610 3 ELLEKRTELGLDLLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKPESGKTSLGTSWNSLREETESAATVHEELSEKLSQ 82 (191)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666555555556788888877654221111 10112356677777778888889999888999
Q ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 102 MLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNV 179 (832)
Q Consensus 102 ~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~ 179 (832)
.+.+|+..|.+..=..-+......++....|..+..+..+ + ..+.-.+...++...+..|......-+..++.+
T Consensus 83 ~i~~~~~~~~~~~~~~rk~~~~~~~~~~k~~~~~~~~~~k---k-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 156 (191)
T cd07610 83 LIREPLEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAK---K-ADEEYREQVEKLNPAQSEYEEEKLNKIQAEQER 156 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h-hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999887753222344444445555555444333222 1 122233444556666666666554444444443
No 281
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.61 E-value=1.2 Score=46.74 Aligned_cols=162 Identities=12% Similarity=0.182 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC------CCCCCccccCchHHHHHHHHHHH---HHH
Q 003309 20 EESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG------HNDPISVAFGGPVMTKFTIALRE---IGT 90 (832)
Q Consensus 20 E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~------~~~~~~~~~~~~~l~~f~~~l~e---i~~ 90 (832)
-++.+.+.+|...=++.|.++..-..+-..-+..|+..|..+..- ..+...+.. ....-|...+.+ ++.
T Consensus 4 ~D~~~~l~k~~~~Gi~~~~~i~~f~kERa~IEkeYakkL~~L~kKy~~kk~~~~~~~~~~--t~~~aw~~~l~e~~~~A~ 81 (253)
T cd07676 4 WDQFDNLEKHTQWGIEVLEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKY--TSCRAFLMTLNEMNDYAG 81 (253)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc--hHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777766666555567888888766421 111111111 223445444444 457
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH---------------------hhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCC--c
Q 003309 91 YKEVLRSQVEHMLNDRLLQYVN---------------------IDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT--K 147 (832)
Q Consensus 91 ~~~~l~~~~~~~~~~pL~~f~~---------------------~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k--~ 147 (832)
.|..+-.++...++.||..++. .-++.+..+||+|++.-.+-++|..+|......- .
T Consensus 82 ~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~s 161 (253)
T cd07676 82 QHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVT 161 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 7888888888888888765544 2334556677777777777777777775554332 1
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 003309 148 TDVAAILEEELHSARSAFEQARFSLVTALSNVEAKK 183 (832)
Q Consensus 148 ~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~ 183 (832)
+..++-+...+.........+-=+|...|+.+...+
T Consensus 162 k~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q 197 (253)
T cd07676 162 KADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQ 197 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122223344455555555555556666666665444
No 282
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.59 E-value=0.86 Score=47.64 Aligned_cols=135 Identities=15% Similarity=0.128 Sum_probs=81.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCc-------cccCchHHHHH
Q 003309 9 SPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPIS-------VAFGGPVMTKF 81 (832)
Q Consensus 9 SP~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~-------~~~~~~~l~~f 81 (832)
.|.|........+.|..+...+.++......++.-..........|+.+|..|+........ ...+...|...
T Consensus 17 p~~~~~~~~~~r~~I~~l~~~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 96 (246)
T cd07597 17 PPDFQEQWANSRERIRRLLESWTKLRVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSL 96 (246)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHH
Confidence 46777777777777777777777777766666664333333456788888888764332211 11122234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHH--------HHHHHhHHHHHHHHHHHhccc
Q 003309 82 TIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARK--------CFDKASLLYDQAREKFLSLRK 144 (832)
Q Consensus 82 ~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk--------~fek~~~~yd~al~k~~~~~k 144 (832)
+.-+..+......-.......++++|..|++- +.-+++.-. ++.....+++..-.|+.+++-
T Consensus 97 s~~~~~~s~~~~~~a~~~~~~vlE~Lk~~~d~-l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~ 166 (246)
T cd07597 97 SKHFQLLSDLSEDEARAEEDGVLEKLKLQLDL-LVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRA 166 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444444456778899999999886 555555544 444555666666666666543
No 283
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.56 E-value=0.34 Score=48.51 Aligned_cols=183 Identities=18% Similarity=0.162 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~ 101 (832)
+|+.+|.-...|-..+.+++...+..+.+...|+.+...|..+..+..... ++ =.-.+.+++++......+. ....
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~-~~--De~i~~~l~kF~~~l~ei~-~~~~ 78 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYS-SK--DAVIETSLTKFSDTLQEMI-NYHT 78 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-Cc--chhhHHHHHHHHHHHHHHH-HHHH
Confidence 578889999999999999999888888888899988888887766654322 12 2245677777777666655 3456
Q ss_pred HHHHHHHHHhHhhhHHH-HHHHHHHHHHhHHHHHHHHH-HHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 102 MLNDRLLQYVNIDLHEV-KEARKCFDKASLLYDQAREK-FLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNV 179 (832)
Q Consensus 102 ~~~~pL~~f~~~di~~~-ke~rk~fek~~~~yd~al~k-~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~ 179 (832)
.+.+.++.-+..-|..+ ++--+.+...+..||.+..+ |+++.|.....+.+ +.++.++......+.
T Consensus 79 ~L~~q~~~~l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~~k~k--~~e~eEa~~~l~~~r---------- 146 (200)
T cd07638 79 ILFDQAQRSIKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQVQRNK--QHEVEEATNILTATR---------- 146 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccCCcCc--hHHHHHHHHHHHHHH----------
Confidence 66777776666666655 35556677777778766654 56677766555433 233444433222221
Q ss_pred hhhchhhHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHH
Q 003309 180 EAKKRFEFLEAVSGTMDAHLRY-FKQGYELLHQMEPYINQVLTYAQQ 225 (832)
Q Consensus 180 ~~~~~~e~l~~l~~~~~a~~~f-f~~g~~~~~~l~~~~~~l~~~~~~ 225 (832)
+ .|-...++|+.+.... .++=+++++.+-.|++...++.++
T Consensus 147 ---~--~F~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~q 188 (200)
T cd07638 147 ---K--CFRHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQ 188 (200)
T ss_pred ---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 2333444444433222 245566666666666665555543
No 284
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.53 E-value=0.0025 Score=69.61 Aligned_cols=62 Identities=26% Similarity=0.273 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCCCCc------cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 003309 753 IGMLELLLQYGANINA------TDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV 814 (832)
Q Consensus 753 ~~~v~~Ll~~gadvn~------~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~ 814 (832)
...+++|.+++++.|. .+..-.|+||+|+..|...||.+||+.|+|+.++|..|.||..++.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 5677888888877653 3445668899999999999999999999999999999999988876
No 285
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.40 E-value=0.65 Score=47.95 Aligned_cols=158 Identities=13% Similarity=0.154 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCC--CCCccccCchHHHHHHHHHHHHHHHHHHHHHH
Q 003309 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHN--DPISVAFGGPVMTKFTIALREIGTYKEVLRSQ 98 (832)
Q Consensus 21 ~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~--~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~ 98 (832)
+.++.|..+|....+.|+.+.+-+.+-...+..|+..|..+..... .........+++..+-.....+...|..|..+
T Consensus 5 ~a~~~l~~Rl~~~~~~~~el~~~~kERa~IE~~Yak~L~kLakk~~~~~~~e~g~~~~~w~~i~~e~e~~a~~H~~la~~ 84 (228)
T cd07650 5 EATEILRIRLSQIKLVNTELADWLQERRRLERQYVQGLRKLARRNEPLNKSLLGVFQNPWLTIESETEFIAASHGELAQR 84 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888777766667899999988865321 11111111245677777888888899999999
Q ss_pred HHHHHHHHHHHHhHhh--------hHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHH
Q 003309 99 VEHMLNDRLLQYVNID--------LHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARF 170 (832)
Q Consensus 99 ~~~~~~~pL~~f~~~d--------i~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sl 170 (832)
+...+..||..|.+.. +..+...-|.|+..+..-+....+..+++ ......+...|.++|..+...+-
T Consensus 85 l~~~ve~~l~~~~~~~~~~~~l~~~q~l~~~~k~~~e~~k~~~Kl~kk~~k~~----~~~~~~~~~~l~~~~~~We~~~~ 160 (228)
T cd07650 85 IETDVEEPLRDFATSTEFMNTLDDDQNLSNLAKELDESQKKWDKLKKKHSKAS----SKAVSAAVSDLEEARQQWDSQAP 160 (228)
T ss_pred HHHHHHHHHHHHHhcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999996552 11233334444444333332222221111 11112225678899999999998
Q ss_pred HHHHHHHhhhhh
Q 003309 171 SLVTALSNVEAK 182 (832)
Q Consensus 171 d~~~~l~~~~~~ 182 (832)
.++..++.+...
T Consensus 161 ~~~e~fQ~leee 172 (228)
T cd07650 161 FLFELLQAIDEE 172 (228)
T ss_pred HHHHHHHHHHHH
Confidence 888888888665
No 286
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.40 E-value=0.33 Score=48.54 Aligned_cols=114 Identities=14% Similarity=0.115 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~ 101 (832)
.|+.+|.-+++|-..+++++...+..+.+...+..+-..|..+..+.-.....++. .+.++.++......+.+ ...
T Consensus 3 ~i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~~D~~---i~~~l~kFs~~l~ei~~-~~~ 78 (200)
T cd07639 3 AIEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGPKDPM---MAECLEKFSDGLNHILD-SHA 78 (200)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch---hHHHHHHHHHHHHHHHH-HHH
Confidence 68889999999999999999876666667778888887786665554433333432 56666666665554432 223
Q ss_pred HHHHHHHHHhHhhhHHH-HHHHHHHHHHhHHHHHHHHHH
Q 003309 102 MLNDRLLQYVNIDLHEV-KEARKCFDKASLLYDQAREKF 139 (832)
Q Consensus 102 ~~~~pL~~f~~~di~~~-ke~rk~fek~~~~yd~al~k~ 139 (832)
.+++..+.-+..-|..+ ++--+.+...+..||.+..+|
T Consensus 79 ~Ll~~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~ 117 (200)
T cd07639 79 ELLEATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESL 117 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhH
Confidence 44444555444444433 344445556666666655554
No 287
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=96.39 E-value=0.29 Score=49.07 Aligned_cols=126 Identities=16% Similarity=0.155 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHH-HHHHHHH
Q 003309 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYK-EVLRSQV 99 (832)
Q Consensus 21 ~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~-~~l~~~~ 99 (832)
++|...|..|+++.|.|++++..-. .+.+++..+.. +-..|..+++++.-.- ..-....
T Consensus 2 ~~l~~~E~~le~~~k~ik~liK~~k-------~~i~A~k~~~~-------------a~~~Fa~sL~~f~~~~~gd~~~dD 61 (207)
T cd07636 2 ERLKSHEAELDKTNKFIKELIKDGK-------SLIAALKNLSS-------------AKRKFADSLNEFKFQCIGDAETDD 61 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------------HHHHHHHHHHHHHhhcCCCccccc
Confidence 4678889999999999999998633 34444444322 2334555555444110 0000111
Q ss_pred HHHHHHHHHHHhHhhhHHHHHHHHH-HHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003309 100 EHMLNDRLLQYVNIDLHEVKEARKC-FDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSN 178 (832)
Q Consensus 100 ~~~~~~pL~~f~~~di~~~ke~rk~-fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~ 178 (832)
...+..+|.+|... |.++.+.|.. ++.++...-.-|.++.. +.=..+.+.||.|.+.+-+|...+..
T Consensus 62 e~~I~~~L~kF~~~-L~ei~~~r~~L~~qa~~~l~~~L~~F~k-----------edi~~~Ke~kK~FdK~se~~~~al~k 129 (207)
T cd07636 62 EICIARSLQEFAAV-LRNLEDERTRMIENASEVLITPLEKFRK-----------EQIGAAKEAKKKYDKETEKYCAVLEK 129 (207)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhHhhhhhHHHHHHHH
Confidence 22344555555554 4444444333 33334444333333321 11124556777777777777665544
No 288
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=96.31 E-value=1.5 Score=46.17 Aligned_cols=85 Identities=9% Similarity=0.046 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC----CCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 29 RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG----HNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLN 104 (832)
Q Consensus 29 ~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~----~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~ 104 (832)
+++.=++.|+.+..-..+-..-+..|+..|..+..- ..+...+.-+..++..+-.....++..|..+..++...+.
T Consensus 13 r~~~G~~~~~el~~f~kERa~IE~~Yak~L~kLakk~~~~~~~~~e~gsl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~ 92 (258)
T cd07655 13 RIEDGHKLCDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLIEKGPEYGTLETAWKGLLSEAERLSELHLSIRDKLLNDVV 92 (258)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334443333333333345666666555421 1111111112346677777788888899999999999999
Q ss_pred HHHHHHhHh
Q 003309 105 DRLLQYVNI 113 (832)
Q Consensus 105 ~pL~~f~~~ 113 (832)
.||..|.++
T Consensus 93 ~~i~~~~~e 101 (258)
T cd07655 93 EEVKTWQKE 101 (258)
T ss_pred HHHHHHHHH
Confidence 999888753
No 289
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=96.28 E-value=0.0037 Score=72.19 Aligned_cols=96 Identities=14% Similarity=0.314 Sum_probs=65.2
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
.++++.|||.|-+.....-..|||.-+......|| .++...
T Consensus 85 sp~~~~gwldk~~pqg~~~~qkr~vkf~~~s~~yf-~~~k~p-------------------------------------- 125 (1186)
T KOG1117|consen 85 SPVIKSGWLDKLSPQGEYPFQKRWVKFDGSSLEYF-LSPKDP-------------------------------------- 125 (1186)
T ss_pred CchhhcchhhccCcCcccccCccceecCCCCcccc-CCCCCC--------------------------------------
Confidence 45789999999977666678999999885554444 332210
Q ss_pred ccccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
...+.|.+...+... ... ...|+|++..|+++|.++++.++..|++.++++....
T Consensus 126 -y~k~~i~va~is~v~--~~g--d~kfevitn~r~fvfr~e~~~~r~~w~s~l~s~~~~Q 180 (1186)
T KOG1117|consen 126 -YSKGPIPVAAISAVR--NFG--DNKFEVITNQRTFVFRQESEGERFIWVSPLQSALKEQ 180 (1186)
T ss_pred -CCCCceeeehhhhhh--hcc--CceEEEEecceEEEEecCCcccceeeechhhhcchhh
Confidence 011112222222211 111 2449999999999999999999999999999887544
No 290
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.12 E-value=0.062 Score=48.72 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=28.3
Q ss_pred cceEEEec--CC---ceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 394 RFCFRIIS--PT---KNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 394 ~~~F~I~t--~~---rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
+.+|+|.+ +. .+|++||.|.++.++|+..|+.+..
T Consensus 74 ~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 74 PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 45677754 43 6899999999999999999987653
No 291
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=96.12 E-value=1.1 Score=46.15 Aligned_cols=191 Identities=12% Similarity=0.085 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch-------h-HHHHHHHHHHhhCC--CCCCCccccCchHHHHH
Q 003309 12 FRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYD-------G-DIAFASALETFGGG--HNDPISVAFGGPVMTKF 81 (832)
Q Consensus 12 FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~-------~-~~~f~~~l~~f~~~--~~~~~~~~~~~~~l~~f 81 (832)
.=..+...|.+++.+...++.+-+.++.+.+...+... . -.++..+|..++.. .+.......+..+|...
T Consensus 32 ~~ld~~~ve~~~e~f~~F~k~Md~sv~~l~~~~~~~~kk~~~~~kkE~qkiG~af~~Ls~afe~d~~~~~~~L~~Al~~t 111 (237)
T PF10456_consen 32 KPLDPQDVESQVESFKKFTKSMDDSVKQLSSVANEFAKKHQGPFKKEYQKIGQAFQSLSQAFELDQQQASMPLTNALKHT 111 (237)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS--SSHCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHhcCCchhhhHHHHHHHHH
Confidence 34456777888888888766666666665554333221 1 13444555544432 12212122234567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHH
Q 003309 82 TIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSA 161 (832)
Q Consensus 82 ~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~ 161 (832)
|+.+..|+.+...--.+ . ..||. +.|..|+-.-..|.-.-..+.+++.|+....|-....+ -...++...
T Consensus 112 g~~y~~Ig~l~~~Qpk~---D-~~pl~----d~L~~Y~GlL~~~pdii~~hk~A~~k~ke~~kl~~e~K--~~~~~~~~v 181 (237)
T PF10456_consen 112 GDTYEEIGDLFAEQPKN---D-LIPLL----DCLKEYRGLLSNFPDIISVHKGALQKVKECEKLSDEGK--MSQQEAEEV 181 (237)
T ss_dssp HHHHHHHHHHHHTSGGG---T-HHHHH----HHHHHHHHHHHTHHHHHHHHHHHHHHCTCHHHHHHTTS--S-HHHHHHH
T ss_pred HHHHHHHHHHHHhcccc---c-hHHHH----HHHHHHhhhHhhCccHHHHHHHHHHHHHHHHHHHhccC--CCHHHHHHH
Confidence 88888887764321100 0 11222 22455666666777777777777776543322100000 114567778
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003309 162 RSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (832)
Q Consensus 162 r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l 212 (832)
++.-...+.-....|+-++..+..+|-..|-.|+..|..||++..+.|++.
T Consensus 182 ~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~~kLe~a 232 (237)
T PF10456_consen 182 QRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIAEKLEQA 232 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888889988888999999999999999999987777553
No 292
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=95.96 E-value=0.012 Score=37.83 Aligned_cols=27 Identities=44% Similarity=0.746 Sum_probs=14.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 003309 740 GCTLLHLACDSADIGMLELLLQYGANI 766 (832)
Q Consensus 740 g~TpLh~Aa~~g~~~~v~~Ll~~gadv 766 (832)
|.||||+|+..++.+++++|+.+|.++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 445555555555555555555554443
No 293
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=95.94 E-value=0.61 Score=46.83 Aligned_cols=78 Identities=12% Similarity=0.071 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHH--HHH-HHHHHHHHHHHHHHHH
Q 003309 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVM--TKF-TIALREIGTYKEVLRS 97 (832)
Q Consensus 21 ~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l--~~f-~~~l~ei~~~~~~l~~ 97 (832)
+.+...+..|+++.|.+++++..-..+..+.+.|..+-..|..+..+.-..++++... .+| +.+++++.++...+.+
T Consensus 2 ~~~~~~e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d 81 (207)
T cd07635 2 ERIRAHEAELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEE 81 (207)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999998644433445666666666665554443222222222 222 4666777776666654
Q ss_pred H
Q 003309 98 Q 98 (832)
Q Consensus 98 ~ 98 (832)
+
T Consensus 82 ~ 82 (207)
T cd07635 82 Q 82 (207)
T ss_pred H
Confidence 4
No 294
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=95.88 E-value=2.8 Score=43.92 Aligned_cols=86 Identities=6% Similarity=0.011 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC----CCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 25 VLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG----HNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (832)
Q Consensus 25 ~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~----~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~ 100 (832)
.+.+|++.=.+.|+.+.+-+.+-..-+..|+..|..+... .++...+.-+..++..+-..+..++..|..+..++.
T Consensus 9 ~~~kr~~~g~~~~~dl~~f~kERA~IE~~Yak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~ia~~H~~la~~L~ 88 (258)
T cd07680 9 RTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLL 88 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444444467788888776541 111111111223566666677777778888888888
Q ss_pred HHHHHHHHHH
Q 003309 101 HMLNDRLLQY 110 (832)
Q Consensus 101 ~~~~~pL~~f 110 (832)
..++.++.++
T Consensus 89 ~e~~e~~r~~ 98 (258)
T cd07680 89 NEDLEKVKNW 98 (258)
T ss_pred HhHHHHHHHH
Confidence 8888888433
No 295
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=95.88 E-value=0.014 Score=37.52 Aligned_cols=29 Identities=45% Similarity=0.609 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 003309 772 RGLTPLHRCILRGKAMFAKLLLTRGADPR 800 (832)
Q Consensus 772 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 800 (832)
.|.||||+|+..++.+++++|+.+|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 37899999999999999999999888764
No 296
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=95.88 E-value=1.7 Score=43.24 Aligned_cols=186 Identities=12% Similarity=0.139 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh--------HHHHHHHHHHhhCCC--CCCCccccCchHHHHHHHHH
Q 003309 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDG--------DIAFASALETFGGGH--NDPISVAFGGPVMTKFTIAL 85 (832)
Q Consensus 16 i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~--------~~~f~~~l~~f~~~~--~~~~~~~~~~~~l~~f~~~l 85 (832)
+..+|++|+.+...++++-..++.+.+..++...- -...-.+|..++... +.......+..++...|+.+
T Consensus 7 ~~~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~kkEyqkiG~af~~LsqaFe~d~~~~s~~L~~Av~~tG~~y 86 (207)
T cd07669 7 LQDVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAISHSFQLDPPYSSEALNNAISHTGRTY 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Confidence 56778888888888887777777666543333211 123334444443321 11111122345677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHH
Q 003309 86 REIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAF 165 (832)
Q Consensus 86 ~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f 165 (832)
.+|+.....--.+.-.-+.+-|.. |+-.--.|--+-.-+-.|+.|.....|-....++ ...+....++.-
T Consensus 87 ~~IG~~faeQpk~D~~pl~d~L~~--------Y~GlL~~fPDii~v~K~A~~KvkE~~k~~~e~Km--~~~~~~~v~~R~ 156 (207)
T cd07669 87 EAVGEMFAEQPKNDLFQMLDTLSL--------YQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRM--DQDEADGIRKRC 156 (207)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHH--------HhCcccCCccHHHHHHHHHHHHHHHHHhhHHhhh--hhhHHHHHHhhh
Confidence 888877554332222222222222 2221122222233333333332111111000000 122344455555
Q ss_pred HHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 166 EQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (832)
Q Consensus 166 ~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 211 (832)
.-.+.-....|+-++..+..++-..|-.|++.|..||++-.+-+++
T Consensus 157 ~~isya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kle~ 202 (207)
T cd07669 157 RVVGFALQAEMNHFHQRRELDFKQMMQHYLRQQIIFYQRVSQQLEK 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777888877778899999999999999999987766643
No 297
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=95.75 E-value=3.1 Score=43.46 Aligned_cols=86 Identities=12% Similarity=0.097 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC----CCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 28 ERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG----HNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHML 103 (832)
Q Consensus 28 ~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~----~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~ 103 (832)
++++.=.+.|+.+...+.+-...+..|+..|..+..- .+......-+..++.-|-.....++..|..+..++..-+
T Consensus 12 kR~~dG~~~C~el~~f~~eRA~IE~~YAk~L~~lakk~~~~~e~g~eyGTL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~ 91 (258)
T cd07681 12 KRIEDGYRLCNDLVSCFQERAKIEKGYAQQLSDWARKWRGIVEKGPQYGTLEKAWHAFLTAAERLSEIHLELRENLVGED 91 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666665555444567888888777541 121111122345678888888889999999999998888
Q ss_pred HHHHHHHhHh
Q 003309 104 NDRLLQYVNI 113 (832)
Q Consensus 104 ~~pL~~f~~~ 113 (832)
.+|+..+-++
T Consensus 92 ~e~ir~~QKe 101 (258)
T cd07681 92 SEKVRAWQKE 101 (258)
T ss_pred HHHHHHHHHH
Confidence 9999775444
No 298
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=95.65 E-value=0.0036 Score=72.25 Aligned_cols=91 Identities=22% Similarity=0.476 Sum_probs=64.2
Q ss_pred eEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCC-CCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccc
Q 003309 294 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (832)
Q Consensus 294 ~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (832)
+-.|||+.+=++ ..+|+|-|.|.. +-.||+|++..+ .+..
T Consensus 925 qLsg~Llrkfkn-ssgwqkLwvvft-~fcl~fyKS~qD~~~la------------------------------------- 965 (1036)
T KOG3531|consen 925 QLSGYLLRKFKN-SSGWQKLWVVFT-NFCLFFYKSHQDSEPLA------------------------------------- 965 (1036)
T ss_pred hhhHHHHHHhhc-cccceeeeeeec-ceeeEeecccccccccc-------------------------------------
Confidence 457898766343 348999999999 566666665433 2221
Q ss_pred cccccccccccccc--CCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHH
Q 003309 373 ARHTVNLLTSTIKV--DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 373 ~~~~i~l~~~~v~~--~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
.+.|+..++.+ +++...+.|.|.+.-.+..|+|.|||.-..+.|+++|+.+
T Consensus 966 ---slPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffraes~yt~~rw~evi~~a 1018 (1036)
T KOG3531|consen 966 ---SLPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFRAESYYTFERWMEVITDA 1018 (1036)
T ss_pred ---cccccccccCCCCCCCCcchhheeeeehhhhHHHHhhhhhhhhhhHHHHhhcC
Confidence 12234333332 3455677899999999999999999999999999998755
No 299
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=95.60 E-value=3.4 Score=42.86 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---------------------HHHhHhhhHHHHHHHHHHHHHhHH
Q 003309 76 PVMTKFTIALREIGTY---KEVLRSQVEHMLNDRL---------------------LQYVNIDLHEVKEARKCFDKASLL 131 (832)
Q Consensus 76 ~~l~~f~~~l~ei~~~---~~~l~~~~~~~~~~pL---------------------~~f~~~di~~~ke~rk~fek~~~~ 131 (832)
+...-|...+.++... +..+...+...++.+| ++-+..-+.++..+||.|++...+
T Consensus 62 ~~~~sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e 141 (237)
T cd07657 62 PISKSWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLED 141 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466666555554 4455555555555555 333444456778889999999999
Q ss_pred HHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHH
Q 003309 132 YDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQ 204 (832)
Q Consensus 132 yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~ 204 (832)
.+.|..||-....+.+.. ..++..+|..|..+....-. -+. +++-.|..+=..+..||.+
T Consensus 142 ~e~Ar~k~e~a~~~~~~~-----~~~~eKak~k~~~~~~k~~~-------akN-eY~l~l~~aN~~q~~yY~~ 201 (237)
T cd07657 142 YKAAKSKFEEAVVKGGRG-----GRKLDKARDKYQKACRKLHL-------CHN-DYVLALLEAQEHEEDYRTL 201 (237)
T ss_pred HHHHHHHHHHHHhhcccc-----hhhHHHHHHHHHHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHh
Confidence 999999987665433211 22344455555444332222 111 4555555555666677754
No 300
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.54 E-value=1.7 Score=43.71 Aligned_cols=185 Identities=16% Similarity=0.125 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (832)
Q Consensus 21 ~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~ 100 (832)
.+|+..|.-++.+-..+++++...+..+.+...+..+-..|..+..+.-.....++ ..+.+++++......+. ...
T Consensus 2 ~~l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~---~i~~~l~kF~~~l~el~-~~~ 77 (200)
T cd07603 2 ASLEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDS---LVQNCLNKFIQALQEMN-NFH 77 (200)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH---HHHHHHHHHHHHHHHHH-HHH
Confidence 36788899999999999999988677667778888888888776555443332332 34677777777666555 344
Q ss_pred HHHHHHHHHHhHhhhHHH-HHHHHHHHHHhHHHHHHHHHHH-hcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003309 101 HMLNDRLLQYVNIDLHEV-KEARKCFDKASLLYDQAREKFL-SLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSN 178 (832)
Q Consensus 101 ~~~~~pL~~f~~~di~~~-ke~rk~fek~~~~yd~al~k~~-~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~ 178 (832)
..+.+.++..+..-|..+ ++--+.|...+..||.+..+|- ++.|.-...+.. ..++.++...
T Consensus 78 ~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K--~~~~~Ea~~~-------------- 141 (200)
T cd07603 78 TILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSK--PQEAEEATNI-------------- 141 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--HHHHHHHHHH--------------
Confidence 566667777776666655 3555667888888888888864 444443333222 2233333221
Q ss_pred hhhhchhhHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 003309 179 VEAKKRFEFLEAVSGTMDAHLR-YFKQGYELLHQMEPYINQVLTYAQQS 226 (832)
Q Consensus 179 ~~~~~~~e~l~~l~~~~~a~~~-ff~~g~~~~~~l~~~~~~l~~~~~~~ 226 (832)
+..- +-.|....++|+..... -.++.+++++.|-.|+....++.++-
T Consensus 142 L~~~-Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~qG 189 (200)
T cd07603 142 LTAT-RSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQG 189 (200)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 1111 12556677777765443 34788888888888887777766553
No 301
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=95.43 E-value=1.9 Score=42.88 Aligned_cols=186 Identities=13% Similarity=0.131 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh--------HHHHHHHHHHhhCC--CCCCCccccCchHHHHHHHHH
Q 003309 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDG--------DIAFASALETFGGG--HNDPISVAFGGPVMTKFTIAL 85 (832)
Q Consensus 16 i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~--------~~~f~~~l~~f~~~--~~~~~~~~~~~~~l~~f~~~l 85 (832)
+..+|++|+.+...++++-..++.+.+..++...- -+..-.+|..++.. .+.......+..++...|..+
T Consensus 7 ~~~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaFe~d~~~~~~~L~~Ai~~tg~~y 86 (210)
T cd07668 7 LVEIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSTSGYQGETDLNDAITEAGKTY 86 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHH
Confidence 45677888888877777777776666543333211 12233344443331 111111122445678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHH
Q 003309 86 REIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAF 165 (832)
Q Consensus 86 ~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f 165 (832)
.+|+.....--.+.-.-+.+-|..| +=.--.|--+-.-+-.|+.|.....|-....++ ...+....+++-
T Consensus 87 ~~IG~~faeQpk~Dl~pl~d~L~~Y--------~G~L~~fPDIi~v~KgA~~KvkE~~k~~~egkm--~~~~~~~v~~R~ 156 (210)
T cd07668 87 EEIASLVAEQPKKDLHFLMETNHEY--------KGFLGCFPDIIGAHKGAIEKVKESDKLVATSKI--TLQDKQNMVKRV 156 (210)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHH--------hCccccCccHHHHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHhhh
Confidence 8888875543322222222222222 111111222222222333332111111000000 122445566666
Q ss_pred HHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 166 EQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (832)
Q Consensus 166 ~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 211 (832)
.-.+.-....|+-++..+..++-..|-.|+..|..||++-.+.+++
T Consensus 157 dviSya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kl~~ 202 (210)
T cd07668 157 STMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQ 202 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777778888877778899999999999999999987776644
No 302
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=95.39 E-value=2.9 Score=43.35 Aligned_cols=157 Identities=10% Similarity=0.029 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCC------CCCCccccCchHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGH------NDPISVAFGGPVMTKFTIALREIGTYKEVLR 96 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~------~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~ 96 (832)
++.|-.+++.-++.|+.+..-+.+-..-+..|+..|..+.... .+.. ......++..+-.....+...+..+.
T Consensus 7 ~~~Ll~rlK~~~~~~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~~~~~~~-~gs~~~a~~~il~~~e~lA~~h~~~a 85 (234)
T cd07652 7 LSTLLDRLKQSIASAKEFATFLKKRAAIEEEHARGLKKLARTTLDTYKRPDHK-QGSFSNAYHSSLEFHEKLADNGLRFA 85 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666665555555666777666553211 1111 11122344445455555555666666
Q ss_pred HHHHHHHHHHHHHHhHh---------------------hhHHHHHHHHHHHHHhHHHHHHHHH--HHhc-ccCCchhHHh
Q 003309 97 SQVEHMLNDRLLQYVNI---------------------DLHEVKEARKCFDKASLLYDQAREK--FLSL-RKGTKTDVAA 152 (832)
Q Consensus 97 ~~~~~~~~~pL~~f~~~---------------------di~~~ke~rk~fek~~~~yd~al~k--~~~~-~k~k~~~~~~ 152 (832)
..+. .+.+||..+.++ -+..+..+|++|+....+||.+... +... -..+.+....
T Consensus 86 ~~L~-~~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~~~~~~~~~~~k~~~~~~ 164 (234)
T cd07652 86 KALN-EMSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYDSLADDLERVKTGDPGKKLKFGLKGNKSAA 164 (234)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccchhhHH
Confidence 5554 466666655332 1223444555555555555544432 1110 0011111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 003309 153 ILEEELHSARSAFEQARFSLVTALSNVEAKKR 184 (832)
Q Consensus 153 e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~ 184 (832)
..+. ++...-+.+--||..+++..+..+.
T Consensus 165 ~~Ee---~~~~K~~~A~~~Y~~~v~~~n~~q~ 193 (234)
T cd07652 165 QHED---ELLRKVQAADQDYASKVNAAQALRQ 193 (234)
T ss_pred HhHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 4555556667788777777766543
No 303
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=2.4 Score=49.55 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHH-H
Q 003309 18 GLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVL-R 96 (832)
Q Consensus 18 ~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l-~ 96 (832)
...++++.++..+.++.+.....+.....+......|...+..++....... .....+..+......+....... .
T Consensus 278 e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~---~l~~~~~~~~~~~~~~~~~~e~~~~ 354 (503)
T KOG2273|consen 278 EKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELGKALAQLSALEGETD---ELSEALSGLAKVIESLSKLLEKLTA 354 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH---HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5556677777777777777666555434433334455555555544221110 12356777777777777777777 6
Q ss_pred HHHHHHHHHHHHHHhHh
Q 003309 97 SQVEHMLNDRLLQYVNI 113 (832)
Q Consensus 97 ~~~~~~~~~pL~~f~~~ 113 (832)
.+-...+..++..|++-
T Consensus 355 ~~~~~~~~~~l~~~i~~ 371 (503)
T KOG2273|consen 355 EKDSKKLAEQLREYIRY 371 (503)
T ss_pred hhhHHHhHHHHHHHHHH
Confidence 66667777777777654
No 304
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.22 E-value=0.031 Score=61.39 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=44.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHH
Q 003309 738 LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 793 (832)
Q Consensus 738 ~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll 793 (832)
..--|+||+|+..|...+|.+||+.|+|+..+|..|+||..++. +.++-..++
T Consensus 428 ~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~ 480 (591)
T KOG2505|consen 428 YLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI 480 (591)
T ss_pred cccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence 34679999999999999999999999999999999999999886 444444333
No 305
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=95.20 E-value=4.7 Score=41.95 Aligned_cols=85 Identities=9% Similarity=0.127 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCC-CCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 29 RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGH-NDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRL 107 (832)
Q Consensus 29 ~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~-~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL 107 (832)
.++.=.+.|+.+.+-..+-..-+..|+..|..+..-. .......-+..++..|-..+..++..|..+..++...+ .||
T Consensus 13 r~~~g~~~~~el~~f~kERA~IE~~YaK~L~kLskk~~~g~~E~GTl~~sw~~~~~E~e~~a~~H~~la~~L~~~~-~~~ 91 (240)
T cd07672 13 HLNDGRKNCKEFEDFLKERASIEEKYGKELLNLSKKKPCGQTEINTLKRSLDVFKQQIDNVGQSHIQLAQTLRDEA-KKM 91 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3333334444444443333344567888887765421 11111111335677788888888888999988888754 488
Q ss_pred HHHhHhh
Q 003309 108 LQYVNID 114 (832)
Q Consensus 108 ~~f~~~d 114 (832)
..|....
T Consensus 92 ~~f~~~q 98 (240)
T cd07672 92 EDFRERQ 98 (240)
T ss_pred HHHHHHH
Confidence 8885543
No 306
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.20 E-value=0.092 Score=46.53 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=38.4
Q ss_pred ccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 375 HTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 375 ~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
+++.+...+|....+....++.|+|..+- -+..+-|.|.+|..+||..++..+
T Consensus 56 GkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~~ 109 (111)
T cd01225 56 GKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNANN 109 (111)
T ss_pred eeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhhc
Confidence 34555555554323344567999999886 578888899999999999998643
No 307
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.12 E-value=3.9 Score=40.60 Aligned_cols=181 Identities=10% Similarity=0.050 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh--------HHHHHHHHHHhhCC--CCCCCccccCchHHHHHHHHH
Q 003309 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDG--------DIAFASALETFGGG--HNDPISVAFGGPVMTKFTIAL 85 (832)
Q Consensus 16 i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~--------~~~f~~~l~~f~~~--~~~~~~~~~~~~~l~~f~~~l 85 (832)
+..+|++|+.+....+++-..++.+....++...- -...-.+|..++.. .+....+..+..++...|+.+
T Consensus 7 ~~~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaF~~d~~~~s~~L~~Av~~tg~~y 86 (207)
T cd07670 7 LQDVESRIDGFKAFTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQAFELDQQAFSAGLNQAIAFTGEAY 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHccCCcccchHHHHHHHHHHHHH
Confidence 45677777777777777776666665543333211 12222334333331 122222223445677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhH----HHHHHHHH
Q 003309 86 REIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAI----LEEELHSA 161 (832)
Q Consensus 86 ~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e----~~~~l~~~ 161 (832)
.+|+.....--.+.-.-+.+-|.. |+=.--+|--+-..+-.|+.|.. +.+++.+ ...+....
T Consensus 87 ~~IG~~faeQpk~Dl~Pl~d~L~~--------Y~G~L~~fPDii~v~KgA~~KvK------E~~k~~~egkm~~~~~~~v 152 (207)
T cd07670 87 EAIGELFAEQPRQDLDPVMDLLAL--------YQGHLANFPDIIHVQKGALTKVK------ESKKHVEEGKMELQKADGI 152 (207)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHH--------HhCccccCCchHHHhHHHHHHHH------HHHHHHHhhccchhhHHHH
Confidence 888876544322222222222211 11111122222222223333311 1111111 01233345
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003309 162 RSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH 210 (832)
Q Consensus 162 r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~ 210 (832)
++.-.-.++-....|+-.+..+..+|-..|..|+..|..||++..+-++
T Consensus 153 ~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~~QI~Fyq~v~~kl~ 201 (207)
T cd07670 153 QDRCNIISFATLAEIHHFHKIRVRDFKSQMQHFLQQQIRFFQKVTQKLE 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555666777777777778888999999999999988766554
No 308
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.98 E-value=0.048 Score=64.03 Aligned_cols=84 Identities=24% Similarity=0.142 Sum_probs=60.2
Q ss_pred ccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---------C-ccCCCCCcHHHHH
Q 003309 711 LTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANI---------N-ATDSRGLTPLHRC 780 (832)
Q Consensus 711 l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadv---------n-~~d~~g~TpLh~A 780 (832)
+..+..+.+.....+|+..+... .-+|.+|+..|.+++|++++.+-... + ..-..+-|||.+|
T Consensus 66 l~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLA 138 (822)
T KOG3609|consen 66 LHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLA 138 (822)
T ss_pred eecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHH
Confidence 33344445555555555554333 45899999999999999999873322 1 1123467999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCC
Q 003309 781 ILRGKAMFAKLLLTRGADPRA 801 (832)
Q Consensus 781 ~~~g~~~~v~~Ll~~gad~~~ 801 (832)
|..++.||+++||.+|+.+..
T Consensus 139 Ah~NnyEil~~Ll~kg~~i~~ 159 (822)
T KOG3609|consen 139 AHLNNFEILQCLLTRGHCIPI 159 (822)
T ss_pred HHhcchHHHHHHHHcCCCCCC
Confidence 999999999999999998754
No 309
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=94.92 E-value=4.1 Score=43.58 Aligned_cols=184 Identities=12% Similarity=0.144 Sum_probs=94.1
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHhh----CCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 34 YKGCRKYTEGLGEGYDGDIAFASALETFG----GGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQ 109 (832)
Q Consensus 34 ~k~~~~~~~~~~~~~~~~~~f~~~l~~f~----~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~ 109 (832)
.++|.++++.+.+--.-+++|+..|.... ..++-..+..-...+-.-|-.....+...+..+-+++.+...+.+.+
T Consensus 27 ~rlc~Dl~~~~qERA~IEk~YaqqL~~wakkWr~lvekgpqyGt~e~aW~~~~teaerlS~lH~evKd~L~nd~~e~ikt 106 (472)
T KOG2856|consen 27 HRLCNDLMNCSQERARIEKAYAQQLTDWAKKWRQLVEKGPQYGTVEKAWNAFMTEAERLSELHLEVKDNLINDDVEKIKT 106 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44555555554444344566777775542 22222222211122345555555566667777777777777777777
Q ss_pred HhHhh--------hHHHHHHHHHHHHHhH-------HHHHHHHHHHhcccCC----------------chhHHhHHHHHH
Q 003309 110 YVNID--------LHEVKEARKCFDKASL-------LYDQAREKFLSLRKGT----------------KTDVAAILEEEL 158 (832)
Q Consensus 110 f~~~d--------i~~~ke~rk~fek~~~-------~yd~al~k~~~~~k~k----------------~~~~~~e~~~~l 158 (832)
+.++. +++.++.-.-|+|+|+ +.+++..+|.++-|.- .|+.+......+
T Consensus 107 wqK~a~H~~vm~G~KE~ke~ED~FrKAQKPWaK~l~evE~ak~~yh~ack~EksA~~re~n~kaDsSvspeq~kKlqdrv 186 (472)
T KOG2856|consen 107 WQKEAYHKQVMGGFKETKEAEDGFRKAQKPWAKLLKEVEAAKKAYHAACKEEKSALTREQNAKADSSVSPEQLKKLQDRV 186 (472)
T ss_pred HHhhhhHHHHhcchhhhHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCCHHHHHHHHHHH
Confidence 65543 4566666667777765 3344444444332221 333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 003309 159 HSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQ 225 (832)
Q Consensus 159 ~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~~~~~ 225 (832)
...+..-++.--+|-..|.++..-+- .||..+..-|++|-+.=.+=-.|++++...+++
T Consensus 187 eK~k~evqktkekYektl~el~~yt~--------~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~v~~ 245 (472)
T KOG2856|consen 187 EKCKQEVQKTKEKYEKTLAELNKYTP--------VYMEDMEQVFEQCQQFEEKRLQFFKEILLKVQR 245 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555543222 355555556665544434444556665554444
No 310
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.72 E-value=4.1 Score=40.61 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchH---HHHHHHHHHHHHHHHHHHHHH
Q 003309 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPV---MTKFTIALREIGTYKEVLRSQ 98 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~---l~~f~~~l~ei~~~~~~l~~~ 98 (832)
.+..-+.-|+++.+.+++++.--..+..+.+.|+.+-..|..+..|.-..+++++. =...+++++++......+.+
T Consensus 3 ~l~~hE~ele~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~- 81 (207)
T cd07633 3 RLKCYEQELERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEE- 81 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHH-
Confidence 34455667889999999888764555566788888888887776665444433332 14467777777776666553
Q ss_pred HHHHHHHHHHHHhHhhhHHH-HHHHHHHHHHhHHHHHHHHHH-HhcccC
Q 003309 99 VEHMLNDRLLQYVNIDLHEV-KEARKCFDKASLLYDQAREKF-LSLRKG 145 (832)
Q Consensus 99 ~~~~~~~pL~~f~~~di~~~-ke~rk~fek~~~~yd~al~k~-~~~~k~ 145 (832)
-...+++..+.-+..-|..+ |+--+.|.....+||...++| .++.|.
T Consensus 82 ~r~~l~d~aq~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~k~ 130 (207)
T cd07633 82 ERMMMVQNASDLLIKPLENFRKEQIGFTKERKKKFEKDSEKFYSLLDRH 130 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 34455555555555445444 355556666666666666663 344444
No 311
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.70 E-value=0.12 Score=44.44 Aligned_cols=29 Identities=34% Similarity=0.582 Sum_probs=25.1
Q ss_pred EEE-ecCCceEEEEeCCHHHHHHHHHHHHH
Q 003309 397 FRI-ISPTKNYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 397 F~I-~t~~rt~~lqA~s~~e~~~Wi~ai~~ 425 (832)
|.+ .+++++|.|.|.|..|+.+||++|+.
T Consensus 63 ~~~~~~~~KSf~~~asS~~Er~eW~~hI~~ 92 (96)
T cd01228 63 FRIHNKNGKSYTFLLSSDYERSEWRESIQK 92 (96)
T ss_pred hhccccCCceEEEEecCHHHHHHHHHHHHH
Confidence 444 45889999999999999999999975
No 312
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=94.69 E-value=0.028 Score=66.58 Aligned_cols=95 Identities=21% Similarity=0.334 Sum_probs=62.5
Q ss_pred EEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccccc
Q 003309 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 374 (832)
Q Consensus 295 k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (832)
.+|||+|+ .+..++|.+|||+|. +|.+.||...... .....
T Consensus 79 ~~g~l~k~-~n~~~~~~~r~f~l~-~g~ls~~~~~~~~-------------------------------------~~~~~ 119 (799)
T KOG1737|consen 79 LEGILLKW-RNYSKGPSSRWFVLS-GGLLSYYFDNSFS-------------------------------------KTTCG 119 (799)
T ss_pred ccceeecc-ccccCCcccceEEec-CcceeeeccCCcc-------------------------------------ccCCC
Confidence 58999999 556778999999999 9999998765431 11122
Q ss_pred ccccccccccccCCcccCCcceEEEec-CCceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 375 HTVNLLTSTIKVDADQSDLRFCFRIIS-PTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 375 ~~i~l~~~~v~~~~~~~~r~~~F~I~t-~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
+.+.+....+.. ..... +-++. ...+|+..+-++.++..|+.+++.+-..+...
T Consensus 120 ~~~~~~~a~i~~---~~~~~--~~~~~~~~q~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (799)
T KOG1737|consen 120 GGINLVTAWIQN---GERMD--ICSVDGSCQIYLVELSKKLQRQGWLHALELAPLIAVEQ 174 (799)
T ss_pred Cccccccccccc---CCCcc--cchhhcccchhhhhhhHHHhhcchhhhhhhccchhhhc
Confidence 334444444321 11111 22221 25789999999999999999999885544444
No 313
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.65 E-value=6.6 Score=40.94 Aligned_cols=160 Identities=13% Similarity=0.209 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC------CCCCCCccccC-chHHHHHHHHHHHHHHHHH
Q 003309 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG------GHNDPISVAFG-GPVMTKFTIALREIGTYKE 93 (832)
Q Consensus 21 ~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~------~~~~~~~~~~~-~~~l~~f~~~l~ei~~~~~ 93 (832)
.+.+.+..|...=++-+..+..-..+-..-+..|+..|..+.. ...+.. +.+. ..++..+-..+.++...++
T Consensus 5 Dqf~~~~k~~~~Gi~~l~~~~~F~keRa~IE~eYakkL~~L~Kky~~KK~~~~e~-p~~t~~~s~~~~L~~~~~~a~q~e 83 (252)
T cd07675 5 DQFDNLDKHTQWGIDFLERYAKFVKERLEIEQNYAKQLRNLVKKYCPKRSSKDEE-PRFTSCLSFYNILNELNDYAGQRE 83 (252)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCC-ccccHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444444433333333334566666655432 111111 1111 1123333333444445566
Q ss_pred HHHHHHHHHHHHHHHHH---------------------hHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhH--
Q 003309 94 VLRSQVEHMLNDRLLQY---------------------VNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDV-- 150 (832)
Q Consensus 94 ~l~~~~~~~~~~pL~~f---------------------~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~-- 150 (832)
.+-.++...+..||.++ ++.-++.+..+||+|++.-.+-+.|..+|..+........
T Consensus 84 ~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~ 163 (252)
T cd07675 84 VVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSD 163 (252)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHH
Confidence 66666655555555444 3344556677788888888888888888877665532222
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003309 151 AAILEEELHSARSAFEQARFSLVTALSNVEA 181 (832)
Q Consensus 151 ~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~ 181 (832)
..-+..++.........+-=+|...|+.+..
T Consensus 164 ~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~ 194 (252)
T cd07675 164 VEKAKQQLNLRTHMADESKNEYAAQLQNFNG 194 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444555555555555566666666543
No 314
>PF15406 PH_6: Pleckstrin homology domain
Probab=94.62 E-value=0.071 Score=46.77 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=25.2
Q ss_pred eEEEecCCceEEEEeCCHHHHHHHHHHHH
Q 003309 396 CFRIISPTKNYTLQAESALDQMDWIEKIT 424 (832)
Q Consensus 396 ~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~ 424 (832)
-|.+...+...+|+|.|..||+.||.+|.
T Consensus 82 kF~f~~~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 82 KFHFKIKGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred eEEEEeCCceeeeecCCHHHhccHHHHhh
Confidence 36666688999999999999999999885
No 315
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.22 E-value=0.39 Score=44.74 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=31.4
Q ss_pred cceEEEecCC--ceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 394 RFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 394 ~~~F~I~t~~--rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
+.+|+|.+.. .+|+|||.|++..+.|+..|...+..-
T Consensus 80 ~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 80 TKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQ 118 (133)
T ss_pred ccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 5679997754 589999999999999999999888644
No 316
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=94.21 E-value=2.7 Score=47.52 Aligned_cols=39 Identities=10% Similarity=0.293 Sum_probs=31.6
Q ss_pred CCcceEEEecC-Cc-eEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 392 DLRFCFRIISP-TK-NYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 392 ~r~~~F~I~t~-~r-t~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
.+++.|-||.. ++ -|.|.+.+++-...||+++.-|+.++
T Consensus 474 ~ws~~f~lI~tqg~ngl~fy~Kte~~kkkWmeqfema~SNi 514 (865)
T KOG2996|consen 474 TWSYGFYLIHTQGRNGLEFYCKTEDLKKKWMEQFEMAKSNI 514 (865)
T ss_pred eeeeeEEEEEEcCCcceEEEEecHHHHHHHHHHHHHHHhcC
Confidence 36788988864 33 69999999999999999998877543
No 317
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=93.96 E-value=8.2 Score=39.33 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 003309 117 EVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKR 184 (832)
Q Consensus 117 ~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~ 184 (832)
++..+|+.|+..-.++++|..||...++.+..+++. +....+++|-+...- +|+..|+..+..++
T Consensus 132 eveK~Kk~Y~~~c~~~e~AR~K~ekas~~K~~~K~~--EKy~~m~~KL~~~hN-~YlL~I~~An~~kd 196 (237)
T cd07685 132 DIEKLKSQYRSLAKDSAQAKRKYQEASKDKDRDKAK--EKYVKSLWKLYALHN-EYVLAVRAAQLHHQ 196 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHH--HHHHHHHHHHHhhhh-HHHHHHHHHHHHHH
Confidence 677899999999999999999999887766555444 334455555554444 88888888876655
No 318
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=93.93 E-value=14 Score=42.14 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 166 EQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAAL 237 (832)
Q Consensus 166 ~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~~~~~~r~~~~~~~~~l 237 (832)
+.-+|++|.-+- .||-.+..|.+--....+.-....++++-.+++-......+|++.++-++++
T Consensus 189 Erk~FefVEpll--------afl~slf~f~h~g~el~qDF~pfk~qlq~s~QnTrn~f~~Tr~E~EeLkKkm 252 (812)
T KOG1451|consen 189 ERKRFEFVEPLL--------AFLYSLFSFFHVGSELHQDFKPFKDQLQTSVQNTRNNFNATRAEAEELKKKM 252 (812)
T ss_pred HHhhhhhHHHHH--------HHHHHHHHHhhhhHHHHhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence 344456665432 3455555565555555454445556666666666666666666664443333
No 319
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=93.89 E-value=9.4 Score=39.77 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 26 LRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLND 105 (832)
Q Consensus 26 l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~ 105 (832)
+-+.++.=...|+.+.+-..+-...+..|+..|..+...........-+..++..|-..+..++..|..+..++... +.
T Consensus 10 l~~r~~~g~~~c~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~-~~ 88 (242)
T cd07671 10 LLQRLLDGRKMCKDVEELLKQRAQAEERYGKELVQIARKAGGQTEINTLKASFDQLKQQIENIGNSHIQLAGMLREE-LK 88 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 33334333444444444433333345677777777654322211111123456666666777777787777777776 46
Q ss_pred HHHHHhHhh
Q 003309 106 RLLQYVNID 114 (832)
Q Consensus 106 pL~~f~~~d 114 (832)
||..|....
T Consensus 89 ~l~~f~~~q 97 (242)
T cd07671 89 SLEEFRERQ 97 (242)
T ss_pred HHHHHHHHH
Confidence 677775553
No 320
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=93.86 E-value=4.5 Score=40.81 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHh
Q 003309 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETF 61 (832)
Q Consensus 21 ~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f 61 (832)
+.|...|.-++++.+.+++++...+....+...+..+...|
T Consensus 2 ~~l~~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F 42 (207)
T cd07602 2 ENLHEHEAELERTNKAIKELIKECKNLISATKNLSKAQRSF 42 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788889999999999999986343333334444444333
No 321
>PF15408 PH_7: Pleckstrin homology domain
Probab=93.24 E-value=0.045 Score=45.33 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=25.1
Q ss_pred ceEEEecCC-ceEEEEeCCHHHHHHHHHHHHH
Q 003309 395 FCFRIISPT-KNYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 395 ~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~ 425 (832)
|.|-..+++ +...+-|+|.+-|+.||++++.
T Consensus 64 ~G~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 64 FGFLMYSPSRRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred EEEEEecCCcchhhhhhhHHHHHHHHHHHhcC
Confidence 566666776 5677889999999999999864
No 322
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=92.97 E-value=12 Score=38.19 Aligned_cols=117 Identities=14% Similarity=0.064 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~ 101 (832)
+|..++..++..--.+.++.........+...+..+...|.....+.-... .+..-...+.++.++......+. ....
T Consensus 3 ~v~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~-~~~~~~~i~~~l~kF~~~l~El~-~~~~ 80 (215)
T cd07604 3 TVGALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKA-LSREEEDLGAAFLKFSVFTKELA-ALFK 80 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccc-cCcccHHHHHHHHHHHHHHHHHH-HHHH
Confidence 567788888888877778777655555566777777777766544432221 11112245666666666655554 3344
Q ss_pred HHHHHHHHHhHhhhHHHH-HHHHHH-HHHhHHHHHHHHHHH
Q 003309 102 MLNDRLLQYVNIDLHEVK-EARKCF-DKASLLYDQAREKFL 140 (832)
Q Consensus 102 ~~~~pL~~f~~~di~~~k-e~rk~f-ek~~~~yd~al~k~~ 140 (832)
.+.+.+++-+..-+..+. +-=+.+ ......||.+...|-
T Consensus 81 ~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye 121 (215)
T cd07604 81 NLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYE 121 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 555555555555454443 212334 356667776665543
No 323
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.79 E-value=11 Score=37.97 Aligned_cols=40 Identities=13% Similarity=-0.022 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHh
Q 003309 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETF 61 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f 61 (832)
+|+.+|.-+..+-..+.+++......+.+...+..+-..|
T Consensus 2 ~i~~~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~F 41 (202)
T cd07606 2 QLQELEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAF 41 (202)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888899998888888887555444444444444444
No 324
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.75 E-value=13 Score=37.91 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC
Q 003309 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG 63 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~ 63 (832)
.|+.++.-...|.+.+++++...+..+.+.+.++.+-..|..
T Consensus 3 ~l~~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~ 44 (215)
T cd07601 3 LLNVFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSK 44 (215)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888999988888888755555555555555444433
No 325
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=92.72 E-value=0.037 Score=61.86 Aligned_cols=97 Identities=20% Similarity=0.387 Sum_probs=61.6
Q ss_pred EEEEEEecCCCCCCCCceeEEEEeCCce----EEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGM----LYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 295 k~G~L~K~~~~~~~~WkrRwfvL~~~~~----l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..||||--+.+.-|.||||||+|-.-.. +.-|+ +.+
T Consensus 466 hsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyr----------------------------------------ekk 505 (1218)
T KOG3543|consen 466 HSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYR----------------------------------------EKK 505 (1218)
T ss_pred cceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhh----------------------------------------hcc
Confidence 5899998877766789999999974111 01111 111
Q ss_pred ccccccccccccccccCCccc---CCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQS---DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~---~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
..|.+-|.|...+|...+... .-++-|.-+-.+-+..|..+++.|+.-|++|+=.|-..++
T Consensus 506 aepqel~qldgytvdytdp~pglqgg~~ffnavkegdtvifasddeqdr~lwvqamyratgqsy 569 (1218)
T KOG3543|consen 506 AEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEGDTVIFASDDEQDRHLWVQAMYRATGQSY 569 (1218)
T ss_pred cChHHHhhccCeeeccCCCCCccccchHHHHHhccCceEEeccCchhhhhHHHHHHHHhhCCcC
Confidence 222233445555554322211 1234477777788999999999999999999987765444
No 326
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=92.40 E-value=5.6 Score=40.02 Aligned_cols=43 Identities=7% Similarity=-0.098 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCC
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGH 65 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~ 65 (832)
+..-+.-|+++.|-.++++..-+.+..+.+.+..+-..|..+.
T Consensus 4 l~~~e~~l~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL 46 (207)
T cd07634 4 LQCHEIELERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSL 46 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667888888888888753443344455555555554433
No 327
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.26 E-value=18 Score=38.53 Aligned_cols=143 Identities=10% Similarity=0.103 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchh------H
Q 003309 77 VMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTD------V 150 (832)
Q Consensus 77 ~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~------~ 150 (832)
.|...|.++.--...+.-+... -..|.+-+..|+...|..-...-.+.++.|.+|-.+|.=....+..-+|+ +
T Consensus 108 mm~atgkal~fssqqrla~r~p-l~r~~~ev~vF~~RAI~Dt~qTi~~meq~RTEYRgaLlWMK~~SqELDPdt~k~meK 186 (436)
T KOG3891|consen 108 MMIATGKALCFSSQQRLALRIP-LSRFYQEVSVFRERAISDTSQTINRMEQCRTEYRGALLWMKDVSQELDPDTDKQMEK 186 (436)
T ss_pred HHHHHhHHhhhhHHHHHHHhhh-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCcchhhHHHH
Confidence 5666666664433333333322 24567778889999999988999999999999999998877776555444 4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003309 151 AAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVS-GTMDAHLRYFKQGYELLHQMEPYINQVLT 221 (832)
Q Consensus 151 ~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~-~~~~a~~~ff~~g~~~~~~l~~~~~~l~~ 221 (832)
-+++..++..++++|....+|.+.++..+-..+. -++.+++ .|......|+++....++.|...+.-+..
T Consensus 187 FRkaQt~Vr~aK~nfDklkmD~~QKVDLL~AsRc-NllSh~Lt~YqteL~~f~~Kta~tf~ti~ea~~~y~~ 257 (436)
T KOG3891|consen 187 FRKAQTQVRSAKENFDKLKMDVCQKVDLLGASRC-NLLSHVLTTYQTELLEFWSKTARTFETIHEACIGYNP 257 (436)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHhHhhHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5678889999999999999999999888887765 5565544 55566677777777777666555544443
No 328
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=92.15 E-value=0.14 Score=59.71 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=39.3
Q ss_pred CCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHHHccCCC
Q 003309 392 DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAP 436 (832)
Q Consensus 392 ~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~~~ 436 (832)
.-++||.|.+..++.+..|.+.++.+.|+.-++.+|..+....++
T Consensus 809 s~p~~~ti~~~qk~i~vsast~~~sk~~~~~r~~~i~~~~k~~~~ 853 (1036)
T KOG3531|consen 809 SVPHCFTISGAQKQIYVSASTRRESKKWEFDRRKAIDLAPKKSSP 853 (1036)
T ss_pred cCCceEEEeccceEEEEeccchhhhhhhhhccchhhhhccccCCC
Confidence 457999999999999999999999999999999999777665443
No 329
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=92.02 E-value=14 Score=37.57 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 003309 19 LEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALE 59 (832)
Q Consensus 19 ~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~ 59 (832)
++.+.+.++..++.+-+.++.++..+.....+...+..+..
T Consensus 24 ~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 64 (229)
T PF03114_consen 24 IDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQK 64 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 35567777777777777777777765554444444444443
No 330
>PF15404 PH_4: Pleckstrin homology domain
Probab=91.73 E-value=1.4 Score=43.54 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.8
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHH
Q 003309 402 PTKNYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 402 ~~rt~~lqA~s~~e~~~Wi~ai~~ 425 (832)
++|+++|-|-|..|++.||-+|..
T Consensus 160 ~gks~VF~ARSRqERD~WV~~I~~ 183 (185)
T PF15404_consen 160 SGKSMVFMARSRQERDLWVLAINT 183 (185)
T ss_pred CCcEEEEEeccHHHHHHHHHHHHh
Confidence 468999999999999999999864
No 331
>smart00721 BAR BAR domain.
Probab=91.56 E-value=18 Score=37.21 Aligned_cols=173 Identities=16% Similarity=0.097 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccc---hhHHHHHHHHHHhhCCCCCCCcc---ccCchHHHHHHHHHHHHHHHHH
Q 003309 20 EESAEVLRERSLKFYKGCRKYTEGLGEGY---DGDIAFASALETFGGGHNDPISV---AFGGPVMTKFTIALREIGTYKE 93 (832)
Q Consensus 20 E~~i~~l~~~l~kl~k~~~~~~~~~~~~~---~~~~~f~~~l~~f~~~~~~~~~~---~~~~~~l~~f~~~l~ei~~~~~ 93 (832)
+++.+.++..++.+-+.+++++..+.... .+......+...|.....+.... ...-.....++.++..++....
T Consensus 26 D~~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (239)
T smart00721 26 DEDFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEALK 105 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHHH
Confidence 56777888888888888887777644433 23333333333333322222111 0011123446677777666655
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccC----CchhHHhHHHHHHHHHHHHHHHHH
Q 003309 94 VLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKG----TKTDVAAILEEELHSARSAFEQAR 169 (832)
Q Consensus 94 ~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~----k~~~~~~e~~~~l~~~r~~f~~~s 169 (832)
.+.. ....+......|+..-+..+...=+.+.+...+++..+--|-+.+.+ +........+ .+..++..+..+-
T Consensus 106 ~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~-kl~~~e~el~~ak 183 (239)
T smart00721 106 KLLQ-VEESLSQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDE-KLAKAEEELRKAK 183 (239)
T ss_pred HHHh-hHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhh-hhhhHHHHHHHHH
Confidence 5542 22333444445555444444455566666677777766666554422 1111111112 5666666666655
Q ss_pred HHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHH
Q 003309 170 FSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYF 202 (832)
Q Consensus 170 ld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff 202 (832)
-.|-.. ..++++.|..++..-..||
T Consensus 184 ~~fe~~--------~~~l~~~l~~l~~~~~~~~ 208 (239)
T smart00721 184 QEFEES--------NAQLVEELPQLVASRVDFF 208 (239)
T ss_pred HHHHHH--------HHHHHHHHHHHHHhhHHhH
Confidence 444431 2244444444444444433
No 332
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.06 E-value=0.84 Score=41.62 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=28.1
Q ss_pred CcceEEEecCC----ceEEEEeCCHHHHHHHHHHHHH
Q 003309 393 LRFCFRIISPT----KNYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 393 r~~~F~I~t~~----rt~~lqA~s~~e~~~Wi~ai~~ 425 (832)
...||.|+... ++++|-|+|+++++.|+..|+.
T Consensus 78 e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 78 EERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 35799998754 5899999999999999998863
No 333
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=91.03 E-value=22 Score=37.11 Aligned_cols=85 Identities=7% Similarity=0.032 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC----CCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 28 ERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG----HNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHML 103 (832)
Q Consensus 28 ~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~----~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~ 103 (832)
++++.=.+.|+++...+.+--..+..|+..|..+..- ++......-+..++.-|-.....+...|..|...+..-.
T Consensus 12 kR~~DG~~~C~dl~~~~~ERA~IE~~Yak~L~~~akkw~~~ie~gpeyGTl~~aw~~~~~Eae~~s~~H~~l~~~L~~e~ 91 (258)
T cd07679 12 KRIDDGHRLCNDLMNCLHERARIEKVYAQQLTEWAKRWRQLVEKGPQYGTVEKAWCALMSEAEKVSELHLEVKASLMNED 91 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666665555444567888888777532 221111111223455555555666666666666655555
Q ss_pred HHHHHHHhH
Q 003309 104 NDRLLQYVN 112 (832)
Q Consensus 104 ~~pL~~f~~ 112 (832)
..++.++-+
T Consensus 92 ~e~ir~wQK 100 (258)
T cd07679 92 FEKIKNWQK 100 (258)
T ss_pred HHHHHHHHH
Confidence 566655433
No 334
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=90.88 E-value=0.99 Score=39.18 Aligned_cols=36 Identities=8% Similarity=0.231 Sum_probs=30.1
Q ss_pred ccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHH
Q 003309 390 QSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 390 ~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~ 425 (832)
-.|+.+.|-|...+ -.|+|.|.+++++++|+..|+.
T Consensus 70 mPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 70 MPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred ccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 34567889997654 5799999999999999999874
No 335
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=90.65 E-value=20 Score=36.00 Aligned_cols=115 Identities=16% Similarity=0.112 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~ 102 (832)
|..++..|+-+-....++.....-.+.+...++++-..|..+.++.-+.++. .-=...+.++..+......+. .....
T Consensus 4 v~~~ee~l~~~e~~L~Kl~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~-~dd~~i~~a~~kfs~~~~El~-~~~k~ 81 (215)
T cd07641 4 VNVLEEALDQDRTALQKVKKSVKAIYNSGQDHVQNEENYAQALDKFGSNFLS-RDNPDLGTAFVKFSTLTKELS-TLLKN 81 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCchhHHHHHHHHHHHHHHHH-HHHHH
Confidence 4556666665554444544443334556678888888887776665443311 111345667777766666555 45566
Q ss_pred HHHHHHHHhHhhhHHH-HHHHHHHH-HHhHHHHHHHHHH
Q 003309 103 LNDRLLQYVNIDLHEV-KEARKCFD-KASLLYDQAREKF 139 (832)
Q Consensus 103 ~~~pL~~f~~~di~~~-ke~rk~fe-k~~~~yd~al~k~ 139 (832)
+.+.+++.+..-|..+ |+--|.|. .....||.+..-|
T Consensus 82 L~~~~~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDy 120 (215)
T cd07641 82 LLQGLSHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDY 120 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHH
Confidence 7777777776666543 45555555 5556666666655
No 336
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=90.34 E-value=25 Score=36.60 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 003309 114 DLHEVKEARKCFDKASLLYDQAREKFLSL 142 (832)
Q Consensus 114 di~~~ke~rk~fek~~~~yd~al~k~~~~ 142 (832)
-+.++..++|.|++...+...|..||..+
T Consensus 129 ~~~eL~k~kK~Y~~~~~ea~~A~~K~~~a 157 (241)
T cd07656 129 VLNELQTAMKTYHTYHAESKSAERKLKEA 157 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888777777544
No 337
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=90.00 E-value=20 Score=35.01 Aligned_cols=137 Identities=18% Similarity=0.102 Sum_probs=65.8
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003309 34 YKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNI 113 (832)
Q Consensus 34 ~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~ 113 (832)
-+.+++++......+........+...|+....+..... ++.....++.++..+......+. .....+.+.+...+-.
T Consensus 6 ~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~~l~~~~~~~~~l~-~~~~~~~~~~~~~v~~ 83 (194)
T cd07307 6 EKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKEL-PDLSNTDLGEALEKFGKIQKELE-EFRDQLEQKLENKVIE 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 333445554433333333444445555554332222111 11111135566666666655554 3445555555555555
Q ss_pred hhHHHH-HHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhH---HHHHHHHHHHHHHHHHHHHHH
Q 003309 114 DLHEVK-EARKCFDKASLLYDQAREKFLSLRKGTKTDVAAI---LEEELHSARSAFEQARFSLVT 174 (832)
Q Consensus 114 di~~~k-e~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e---~~~~l~~~r~~f~~~sld~~~ 174 (832)
-|..+. ..-+.+.+...+|+.+...|-+...+ ...++. ....+..+...+..+.-.|..
T Consensus 84 pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k--~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~ 146 (194)
T cd07307 84 PLKEYLKKDLKEIKKRRKKLDKARLDYDAAREK--LKKLRKKKKDSSKLAEAEEELQEAKEKYEE 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccCChhHHHHHHHHHHHHHHHHHH
Confidence 566665 55566667777777776666544321 111111 223455566666555544443
No 338
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=88.45 E-value=32 Score=35.30 Aligned_cols=170 Identities=14% Similarity=0.179 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~ 101 (832)
..+.-+..+.++-+.++++...+.++..+......+-..+.....+.. ...+.+. +.++......+...++.
T Consensus 12 ~fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~~~-~~~~~~~-------~~~~~e~y~~~~~~l~~ 83 (225)
T cd07590 12 ELEREVQKLQQLESTTKKLYKDMKKYIEAVLALSKAEQRLSQDLASGP-LCEDNDE-------LRNLVEALDSVTTQLDK 83 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-cCCCChH-------HHHHHHHHHHHHHHHHH
Confidence 445556667778888888887755544444444444444444333321 1112222 22334444445555554
Q ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHhH---HHHHHHHHHHhcccCCchhHHh------HHHHHHHHHHHHHHHHHHHH
Q 003309 102 MLNDRLLQYVNIDLHEVKEARKCFDKASL---LYDQAREKFLSLRKGTKTDVAA------ILEEELHSARSAFEQARFSL 172 (832)
Q Consensus 102 ~~~~pL~~f~~~di~~~ke~rk~fek~~~---~yd~al~k~~~~~k~k~~~~~~------e~~~~l~~~r~~f~~~sld~ 172 (832)
++..-+..+.+.-|.|+++....|-.++. +-+..+--|-+.+.+ -++++ ..+..|..++..+..+.-+|
T Consensus 84 ~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~--~~kl~~K~~k~~~~~KL~kae~el~~Ak~~y 161 (225)
T cd07590 84 TVQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAK--VEKLAEKEKTGPNLAKLEQAEKALAAARADF 161 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHhCccCChhHHHHHHHHHHHHHHHHHH
Confidence 44333444555556777777777766443 334444445433321 11222 11367888888888887666
Q ss_pred HHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 173 VTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELL 209 (832)
Q Consensus 173 ~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~ 209 (832)
-. ..-++++.|=.++..-..||.-.++.|
T Consensus 162 e~--------~N~~L~~ELP~l~~~r~~f~~p~Fqsl 190 (225)
T cd07590 162 EK--------QNIKLLEELPKFYNGRTDYFQPCFEAL 190 (225)
T ss_pred HH--------HHHHHHHHhHHHHHHccHHHHHHHHHH
Confidence 54 233678888888888888888776666
No 339
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=88.27 E-value=3.9 Score=36.53 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=33.6
Q ss_pred cCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 391 SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 391 ~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.+.++.|.|.|..+...|.|+|..+.+.|++.|+.-..
T Consensus 67 ~~~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~ 104 (110)
T PF08458_consen 67 GEERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLS 104 (110)
T ss_pred CceEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999887654
No 340
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=88.17 E-value=1.5 Score=43.92 Aligned_cols=89 Identities=18% Similarity=0.211 Sum_probs=59.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCcHHHHHHH--cCCHHHHHHHHhCC-CCCCC---CCCCCCcHH
Q 003309 741 CTLLHLACDSADIGMLELLLQY----GANINATDSRGLTPLHRCIL--RGKAMFAKLLLTRG-ADPRA---VNREGKTSL 810 (832)
Q Consensus 741 ~TpLh~Aa~~g~~~~v~~Ll~~----gadvn~~d~~g~TpLh~A~~--~g~~~~v~~Ll~~g-ad~~~---~~~~g~TpL 810 (832)
.++|-+|..++..+++-+||.+ ..|+-.. ..+.--+-|+.. ..+..+++.+|.+| ++||. +-+.|.|-|
T Consensus 180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~-~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtML 258 (284)
T PF06128_consen 180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM-EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTML 258 (284)
T ss_pred HHHHHHHhcccHHHHHHHHHhhcceecchhhhc-CcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHH
Confidence 4677777777777888888764 1222111 112223444433 34567888888888 77774 356788899
Q ss_pred HHHHHcCCCcHHHHHHHhhCCC
Q 003309 811 ELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 811 ~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+-|+.++. .+++.+||.+||
T Consensus 259 DNA~Ky~~--~emi~~Llk~GA 278 (284)
T PF06128_consen 259 DNAMKYKN--SEMIAFLLKYGA 278 (284)
T ss_pred HhHHhcCc--HHHHHHHHHcCc
Confidence 99988887 889999988875
No 341
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=84.41 E-value=77 Score=35.71 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=32.9
Q ss_pred ccccccccccCCcccCCcceEEEecCCc-eEEEEeCCHHHHHHHHHHHHH
Q 003309 377 VNLLTSTIKVDADQSDLRFCFRIISPTK-NYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 377 i~l~~~~v~~~~~~~~r~~~F~I~t~~r-t~~lqA~s~~e~~~Wi~ai~~ 425 (832)
+.+....|....+....+..|+|..+.- .....+..+.+..+|+++++.
T Consensus 355 lp~tG~iV~klEdte~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 355 LPTTGMIVTKLEDTENHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred cccceeEEeehhhhhcccccccccccchhheeeccCChHHHHHHHHHhhh
Confidence 3333334433223334456799988764 466789999999999999985
No 342
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=84.11 E-value=52 Score=33.48 Aligned_cols=150 Identities=11% Similarity=0.107 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHH---
Q 003309 20 EESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLR--- 96 (832)
Q Consensus 20 E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~--- 96 (832)
|.++..+++.+..+-+...++......+......+.++..+|.....+.... . .+ .+..++..+.+....+.
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~-E-~~---~L~~~L~~lae~~~~i~d~~ 77 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADT-E-NP---SLKQGLKNFAECLAALQDYR 77 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-c-CH---HHHHHHHHHHHHHHHHHHHH
Confidence 6788888899999988888888776655555677777777776654443322 1 22 23444555554433333
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 97 SQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTAL 176 (832)
Q Consensus 97 ~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l 176 (832)
+.-...+...+-+.++.-+.-++..|..|...+..++..+.+..++.|-+... ......+.++.....++..||-..-
T Consensus 78 q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~~~~ar~~~~~~~~~leklk~~~--~~d~~~i~eaE~~l~~a~~d~~r~s 155 (211)
T cd07598 78 QAEVERLEAKVVQPLALYGTICKHARDDLKNTFTARNKELKQLKQLEKLRQKN--PSDRQIISQAESELQKASVDANRST 155 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556666777777777888888666666666666544433332111 1123345567777777777665533
No 343
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=83.29 E-value=66 Score=34.09 Aligned_cols=108 Identities=10% Similarity=0.049 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCcc-ccCchHHHHHHHHHHHHHHHHHHHHH
Q 003309 19 LEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISV-AFGGPVMTKFTIALREIGTYKEVLRS 97 (832)
Q Consensus 19 ~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~-~~~~~~l~~f~~~l~ei~~~~~~l~~ 97 (832)
+-+....-+.+-++|.|.++.+... . ....|..++..+....+..... ...+..|. +.++++..+......
T Consensus 35 ~keRa~iEe~Yak~L~kLak~~~~~-~----~~Gt~~~~~~~~~~e~e~~a~~H~~la~~L~---~~~~~l~~~~~~~~k 106 (269)
T cd07673 35 IRERATIEEAYSRSMTKLAKSASNY-S----QLGTFAPVWDVFKTSTEKLANCHLELVRKLQ---ELIKEVQKYGEEQVK 106 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccC-C----CcChHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3344444455666777777765432 1 1235777776665433222111 11112222 233444444433321
Q ss_pred H------HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHH
Q 003309 98 Q------VEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQA 135 (832)
Q Consensus 98 ~------~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~a 135 (832)
. .........+.+ ..-.+.+..+|++|+..-.+++.+
T Consensus 107 ~rK~~ke~~~~~~~~~~~~-~~~~~~~~KaK~~Y~~~c~e~e~~ 149 (269)
T cd07673 107 SHKKTKEEVAGTLEAVQNI-QSITQALQKSKENYNAKCLEQERL 149 (269)
T ss_pred HHHhHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111223333333 333456667778887777777654
No 344
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=81.89 E-value=10 Score=35.28 Aligned_cols=41 Identities=17% Similarity=0.401 Sum_probs=35.2
Q ss_pred cCCcceEEEec--------CCceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 391 SDLRFCFRIIS--------PTKNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 391 ~~r~~~F~I~t--------~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
.+-.+.|+|++ |.++|.||+.+.|-+...|.+|++.+....
T Consensus 110 ~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre~~ 158 (160)
T cd01255 110 MESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRESV 158 (160)
T ss_pred cccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 35578999987 568999999999999999999999887654
No 345
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=81.67 E-value=0.073 Score=66.67 Aligned_cols=108 Identities=17% Similarity=0.281 Sum_probs=72.0
Q ss_pred eEEEEEEecC-------CCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCC
Q 003309 294 IRQGYLSKRS-------SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV 366 (832)
Q Consensus 294 ~k~G~L~K~~-------~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (832)
..+|+|+.+- +..+++|..-||++. .+.+.+|+..+....+. -..++|.
T Consensus 2300 ~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~-e~el~fykD~k~~~a~v----------------------e~~~r~e- 2355 (2473)
T KOG0517|consen 2300 QLEGFLYRKHLLGALEIKASNRSWDNVYCRIR-EKELGFYKDAKKDLASV----------------------ELLVRGE- 2355 (2473)
T ss_pred HHHhHHHHHHHHhhhhhhhhcccHHHHHHHHH-hccchhhcccCcccccc----------------------hhhccCC-
Confidence 4689986442 124578999999999 56666666654321110 0011111
Q ss_pred CCccccccccccccccccccCCcccCCcceEEEecC-CceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 367 HDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 367 ~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~-~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
..+.+..+.|.+..+..++.+.|.+..+ +.-|.|||..+++|..|+.++..++++++.-
T Consensus 2356 --------~~lel~~a~i~~a~dy~kkk~v~~l~~~~gae~llq~k~ee~m~sWL~~~a~~~~~~lk~ 2415 (2473)
T KOG0517|consen 2356 --------PPLELDMAAIEVASDYHKKKHVFLLQLPPGAEHLLQAKDEEEMESWLRALAVKRAEALKL 2415 (2473)
T ss_pred --------cchhcchhHHHHHHHHHHHhHhhhhcCCchHHHHHhhccHHHHHHHHHHHHHHHHHHhhh
Confidence 1233445566555667778889998764 5789999999999999999999999877643
No 346
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=81.51 E-value=0.51 Score=54.00 Aligned_cols=100 Identities=11% Similarity=-0.104 Sum_probs=61.3
Q ss_pred hccCCcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCC
Q 003309 286 AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG 365 (832)
Q Consensus 286 ~~~~~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (832)
.+.+...+.+-|+|.++.. +.|.|++|||++. ++.+.||+.+.+.+.+...
T Consensus 252 Sgy~~~~~s~~k~lkrr~~-v~k~gqi~~y~~~-~~~~~~p~s~~d~~s~~~~--------------------------- 302 (936)
T KOG0248|consen 252 SGYWTQLTSRIKSLKRRYV-VFKNGQISFYRKH-NNRDEEPASKIDIRSVTKL--------------------------- 302 (936)
T ss_pred ccchhcchHHHHHHHhHhe-eeccceEEEEEcC-CCccccccCccccccccee---------------------------
Confidence 3455566678899998854 4568999999999 5666666666554333210
Q ss_pred CCCccccccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 366 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 366 ~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
--..|+.-.........+.| ...++.+-++...-.++||.+.+..-...
T Consensus 303 ------------~~~~~s~~fqli~~t~~~~~----~~~s~~lt~dw~~iL~~~iKv~~~~~~a~ 351 (936)
T KOG0248|consen 303 ------------EQQGAAYAFQLITSTDKMNF----MTESERTTHDWVTILSAAIKATTLREMAS 351 (936)
T ss_pred ------------eccchhHHhhhhhhceeEEE----eccChhhhhhhHHHHHHHHHHHhccchhh
Confidence 00111111100011112223 35678899999999999999998775433
No 347
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=80.83 E-value=1.6 Score=47.62 Aligned_cols=26 Identities=42% Similarity=0.829 Sum_probs=19.4
Q ss_pred eeEEEEEEecCCC-----CCCCCceeEEEEe
Q 003309 293 TIRQGYLSKRSSN-----LRGDWKRRFFVLD 318 (832)
Q Consensus 293 ~~k~G~L~K~~~~-----~~~~WkrRwfvL~ 318 (832)
.+|+|++.||... .+..||||||.|.
T Consensus 303 ~~~eg~~~~r~~~~~~~~~~~~fkk~~f~l~ 333 (333)
T cd05135 303 TVKEGYLHKRKTEGPQLLTRFAFKKRYFWLS 333 (333)
T ss_pred hhhhhHhhhccccCCCCcccccccceeeecC
Confidence 4789999998731 2336999999873
No 348
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=80.58 E-value=2.7 Score=39.50 Aligned_cols=34 Identities=32% Similarity=0.419 Sum_probs=24.6
Q ss_pred CcceEEEecCC---ceEEEEeCCHHHHHHHHHHHHHH
Q 003309 393 LRFCFRIISPT---KNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 393 r~~~F~I~t~~---rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
.-|-|.|..-+ .+|+|.|+|+.++++|++.|..+
T Consensus 98 ~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 98 SLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp SEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 34677776654 46899999999999999999764
No 349
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=80.44 E-value=69 Score=32.39 Aligned_cols=100 Identities=12% Similarity=0.122 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHH-HHHHhHHHHHHHHHHHhcccCCchhHHhHH
Q 003309 76 PVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKC-FDKASLLYDQAREKFLSLRKGTKTDVAAIL 154 (832)
Q Consensus 76 ~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~-fek~~~~yd~al~k~~~~~k~k~~~~~~e~ 154 (832)
.+-..|+..+.++...+-.+.. -+..+..+|++|.+. |.++.+.|.. ++.++...-.-+.+|. .+.
T Consensus 37 ~a~~~~~~~l~~~~~~~f~~~~-dDe~i~~~L~kFs~~-L~El~~~~~~L~~q~~~sl~~pL~~F~-----------ked 103 (215)
T cd07631 37 AATHLTSKLLKEYEKQRFPLGG-DDEVMSSTLQQFSKV-IDELSSCHAVLSTQLADAMMFPITQFK-----------ERD 103 (215)
T ss_pred HHHHHHHHHHHHHHHhcCCcCC-CcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence 3456677777776655444543 333477788888776 6666554443 3334444444333332 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hhhhchhhHH
Q 003309 155 EEELHSARSAFEQARFSLVTALSN---VEAKKRFEFL 188 (832)
Q Consensus 155 ~~~l~~~r~~f~~~sld~~~~l~~---~~~~~~~e~l 188 (832)
=.+..++|+.|.+++-+|...+.. +..+++.|.+
T Consensus 104 L~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~ 140 (215)
T cd07631 104 LKEILTLKEVFQIASNDHDAAINRYSRLSKRRENEKV 140 (215)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCchHH
Confidence 235677888888888888776654 3344555544
No 350
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=80.27 E-value=82 Score=33.14 Aligned_cols=153 Identities=13% Similarity=0.128 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCcc-ccCchHHHHHHHHHHHHHHHHHHHH
Q 003309 18 GLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISV-AFGGPVMTKFTIALREIGTYKEVLR 96 (832)
Q Consensus 18 ~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~-~~~~~~l~~f~~~l~ei~~~~~~l~ 96 (832)
.+-+....-+.+-++|.|.++++.... + ...|..++..+....+..... ......| .+.++++..+...+.
T Consensus 27 f~keRa~IEe~Yak~L~kLakk~~~~~-~----~gt~~~~w~~i~~~~e~~a~~H~~l~~~L---~~~~~~l~~~~~~~~ 98 (261)
T cd07648 27 FLRERATIEETYSKALNKLAKQASNSS-Q----LGTFAPLWLVLRVSTEKLSELHLQLVQKL---QELIKDVQKYGEEQH 98 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-C----cCcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 344555555567778888888765432 2 123445554444322211100 0011122 223334444433333
Q ss_pred HH------HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHH----h-------HHHHHHH
Q 003309 97 SQ------VEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVA----A-------ILEEELH 159 (832)
Q Consensus 97 ~~------~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~----~-------e~~~~l~ 159 (832)
.. ....+...+.. +...+..+..+|++|+..-.+++.+..... ..++.+++ . ..-..+.
T Consensus 99 k~rK~~k~~~~~~~k~~~~-~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~---s~k~~eK~~~K~~ka~~~Y~~~v~~~~ 174 (261)
T cd07648 99 KKHKKVKEEESGTAEAVQA-IQTTTAALQKAKEAYHARCLELERLRRENA---SPKEIEKAEAKLKKAQDEYKALVEKYN 174 (261)
T ss_pred HHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 11112222222 233356677899999999888887643221 12222222 1 1122355
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 003309 160 SARSAFEQARFSLVTALSNVEAK 182 (832)
Q Consensus 160 ~~r~~f~~~sld~~~~l~~~~~~ 182 (832)
..|..|...+-..+..+++++..
T Consensus 175 ~~~~~~~~~m~~~~~~~Q~lEe~ 197 (261)
T cd07648 175 NIRADFETKMTDSCKRFQEIEES 197 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666554
No 351
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.74 E-value=1.5e+02 Score=35.34 Aligned_cols=113 Identities=15% Similarity=0.263 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhH-HHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHH
Q 003309 11 MFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGD-IAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIG 89 (832)
Q Consensus 11 ~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~-~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~ 89 (832)
.||+.|+.++++-..--..+..+....+.+.+.+|--.... ..|-..|..+.... ...+....|.++...++++.
T Consensus 164 elr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~----~~~is~etl~~L~~~v~~l~ 239 (660)
T KOG4302|consen 164 ELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQ----SRSISDETLDRLDKMVKKLK 239 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcc----cccCCHHHHHHHHHHHHHHH
Confidence 57888888877666665566666666677777666643321 34444443333211 13344567899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHh
Q 003309 90 TYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKAS 129 (832)
Q Consensus 90 ~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~ 129 (832)
+.+....+.++... ..+.+|=+. +..-.+.+..|....
T Consensus 240 ~~k~qr~~kl~~l~-~~~~~LWn~-l~ts~Ee~~~f~~~t 277 (660)
T KOG4302|consen 240 EEKKQRLQKLQDLR-TKLLELWNL-LDTSDEERQRFVHVT 277 (660)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHh-ccCCHHHHHHHcccc
Confidence 88777665544333 333333222 233347777776555
No 352
>KOG4240 consensus Multidomain protein, contains SPEC repeats, PH, SH3, and separate rac-specific and rho-specific guanine nucleotide exchange factor domains [Signal transduction mechanisms]
Probab=78.34 E-value=78 Score=39.36 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=29.1
Q ss_pred eEEEecCC--ceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 396 CFRIISPT--KNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 396 ~F~I~t~~--rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
-|+|.... -.|.++|.|-+-...||.-|+.++++.
T Consensus 895 kf~~~~g~~~~~~~~~a~~~~~K~~W~~~ir~~~~~~ 931 (1025)
T KOG4240|consen 895 KFELWVGRTESVIDLKASNHETKQKWVKEIREVLQER 931 (1025)
T ss_pred EEEEeccCCCcceeeecCCcchhhhhccchHHHHHHH
Confidence 37775433 379999999999999999999999765
No 353
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=77.31 E-value=1.6e+02 Score=34.85 Aligned_cols=207 Identities=13% Similarity=0.121 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYK 92 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~ 92 (832)
+..++..++.++.++..++.+....+.+.+.-.+.......+.+-+..+.....+.. .-.|+++..+-..+..++..+
T Consensus 100 ~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~--~~~G~a~~~Le~~L~~ie~~F 177 (560)
T PF06160_consen 100 KQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHS--FSYGPAIEELEKQLENIEEEF 177 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhchhHHHHHHHHHHHHHHH
Confidence 456677777777777777777777776666433322222333333333322111110 012344444444444444443
Q ss_pred HHHHHHHH-----------HHH---HHHHHHHhHhhhHHH-H----HHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhH
Q 003309 93 EVLRSQVE-----------HML---NDRLLQYVNIDLHEV-K----EARKCFDKASLLYDQAREKFLSLRKGTKTDVAAI 153 (832)
Q Consensus 93 ~~l~~~~~-----------~~~---~~pL~~f~~~di~~~-k----e~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e 153 (832)
..+..-+. ..+ +.-|...++. |+++ + +.-.+++..+..|..+...--.+....-++.+..
T Consensus 178 ~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~-IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~ 256 (560)
T PF06160_consen 178 SEFEELTENGDYLEAREILEKLKEETDELEEIMED-IPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQ 256 (560)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Confidence 33321111 111 1222222222 3322 2 4445556666667666666545554444445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 003309 154 LEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQS 226 (832)
Q Consensus 154 ~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~~~~~~ 226 (832)
...++..+...-...-++=+....+-. . +-++.|.+.|......++...+.++.+..++..+....+..
T Consensus 257 i~~~l~~~~~~L~~l~l~~~~~~~~~i---~-~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l 325 (560)
T PF06160_consen 257 IEEQLEEALALLKNLELDEVEEENEEI---E-ERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKEL 325 (560)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 666666666555444444443222211 1 22566666666666666666666666666666655544433
No 354
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=76.59 E-value=92 Score=31.71 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCch-HHHHH---HHHHHHHHHHHHHHH
Q 003309 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGP-VMTKF---TIALREIGTYKEVLR 96 (832)
Q Consensus 21 ~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~-~l~~f---~~~l~ei~~~~~~l~ 96 (832)
++++.++..+..+.+.++.++........+......+...|.....+...+...+. ....+ ......+..+. ..+
T Consensus 2 ~~f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~~~~~~~~~~~~~~~~~~~~y~-~~~ 80 (216)
T cd07599 2 EQFEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLARLSRYV-KAL 80 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCcCcCCCCCcHHHHHHHHHHH-HHH
Confidence 46778888888888888888887444333334444444444433333332211111 11111 11223334443 233
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHH---HHHHHHHhcccCC-----chhH-HhHHHHHHHHHHHHHHH
Q 003309 97 SQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYD---QAREKFLSLRKGT-----KTDV-AAILEEELHSARSAFEQ 167 (832)
Q Consensus 97 ~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd---~al~k~~~~~k~k-----~~~~-~~e~~~~l~~~r~~f~~ 167 (832)
..+...+..-+..|.+.-+.|+++.+..|...+..-. ..+--|-+...+- +... ....+..|..+.+.+..
T Consensus 81 ~~l~~~~~~~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~ 160 (216)
T cd07599 81 EELKKELLEELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEE 160 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHH
Confidence 3445556666676777777888888877776655432 2222233332211 1110 12335678888888877
Q ss_pred HHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 003309 168 ARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYEL 208 (832)
Q Consensus 168 ~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~ 208 (832)
+.-+|.. || -.+.+.|=.++..-..|+......
T Consensus 161 a~~~y~~-lN-------~~Lk~eLP~l~~~~~~~~~~~~~~ 193 (216)
T cd07599 161 AKEEYEA-LN-------ELLKSELPKLLALADEFLPPLFKS 193 (216)
T ss_pred HHHHHHH-HH-------HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7766655 22 234444444555555555444333
No 355
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=76.43 E-value=1e+02 Score=32.22 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=51.6
Q ss_pred HHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCc-----hhHHhHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 003309 107 LLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTK-----TDVAAILEEELHSARSAF----EQARFSLVTALS 177 (832)
Q Consensus 107 L~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~-----~~~~~e~~~~l~~~r~~f----~~~sld~~~~l~ 177 (832)
|+.-+..-+.++...||.|+..-...+.+..|--...|++. -..++-....+.+-+..+ ..+.=||+..|+
T Consensus 122 lq~El~~~~~EL~KaKK~Y~~~cq~~e~~ReK~~~e~K~~~s~~qs~~slqK~~~K~~~k~~e~n~k~~~ARNeYLl~L~ 201 (260)
T cd07677 122 IQAELQETVKDLAKGKKKYFETEQMAHAVREKADIEAKSKLSLFQSRISLQKASVKLKARRSECNSKATHARNDYLLTLA 201 (260)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33434455567777788888777766666666532223210 001111122333333333 378889999999
Q ss_pred hhhhhchhhHHHHHHHHHHHHH
Q 003309 178 NVEAKKRFEFLEAVSGTMDAHL 199 (832)
Q Consensus 178 ~~~~~~~~e~l~~l~~~~~a~~ 199 (832)
.....++-=+...|-+.|...-
T Consensus 202 aaNa~~~kYY~~DLp~l~~~~d 223 (260)
T cd07677 202 AANAHQDRYYQTDLVNIMKALD 223 (260)
T ss_pred HHHHHHHHhhhccHHHHHHHhc
Confidence 9887776555555555555443
No 356
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=75.94 E-value=2.6 Score=45.25 Aligned_cols=27 Identities=26% Similarity=0.593 Sum_probs=21.1
Q ss_pred ceeEEEEEEecCCC----CCCCCceeEEEEe
Q 003309 292 QTIRQGYLSKRSSN----LRGDWKRRFFVLD 318 (832)
Q Consensus 292 ~~~k~G~L~K~~~~----~~~~WkrRwfvL~ 318 (832)
.++|+|+|.||..+ .++.||||||.|.
T Consensus 282 ~~~~e~~~~~r~~~~~~~~~~~~kkr~~~l~ 312 (313)
T cd05394 282 VHLKEGEMYKRAQGRTRIGKKNFKKRWFCLT 312 (313)
T ss_pred hhhHHHHHHhhccCCCccccccchhheeecC
Confidence 34789999999733 3468999999986
No 357
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=75.62 E-value=0.068 Score=56.68 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=40.2
Q ss_pred ccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHH
Q 003309 375 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 375 ~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
+.|+|..|+-.. .-...+.|.|.|-+.+-.|.|.|-+.--+..||.|+...
T Consensus 63 ~~~~LR~C~~v~-e~a~q~nY~~~i~~~~~~~tL~~~~s~Ir~~~~~A~~kT 113 (593)
T KOG4807|consen 63 GEIDLRSCTDVT-EYAVQRNYGFQIHTKDAVYTLSAMTSGIRRNWIEALRKT 113 (593)
T ss_pred ccccHHHHHHHH-HHHHHhccceeecccchhhhhHHHHHHHHHHHHHHHHhc
Confidence 457777776432 223457899999999999999999999999999998743
No 358
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=75.21 E-value=5.4 Score=40.09 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHcC-CCCCc---cCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 003309 751 ADIGMLELLLQYG-ANINA---TDSRGLTPLHRCILRGKAMFAKLLLTRGAD 798 (832)
Q Consensus 751 g~~~~v~~Ll~~g-advn~---~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 798 (832)
.+..++++.|.+| ++||. +-+.|.|-|.-|..+++.+++.+||++||-
T Consensus 228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 4578999999998 57875 356799999999999999999999999984
No 359
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=73.99 E-value=1.1e+02 Score=31.37 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 19 LEESAEVLRERSLKFYKGCRKYTEG 43 (832)
Q Consensus 19 ~E~~i~~l~~~l~kl~k~~~~~~~~ 43 (832)
++.+...++..++.+.+.+.+++..
T Consensus 5 ld~~f~~le~~~d~t~~~~~~l~~~ 29 (223)
T cd07614 5 LDDDFKEMEKKVDLTSKAVTEVLAR 29 (223)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888777777665
No 360
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=73.17 E-value=2.6e+02 Score=35.27 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHh
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETF 61 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f 61 (832)
..+.++++....++|-+.+.+.+..+++++.++-.++.....+++..
T Consensus 1543 ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a 1589 (1758)
T KOG0994|consen 1543 RAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGA 1589 (1758)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567778888888888888888888888877766666666666554
No 361
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=72.71 E-value=12 Score=39.74 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=34.5
Q ss_pred CCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 392 DLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 392 ~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
.|++||.|.+.. ...+|..|.+.|...|=.++|.|+-.-.
T Consensus 350 ~R~~CF~~qs~~ge~~yfsVEl~seLa~wE~sfq~Atf~eV 390 (505)
T KOG3549|consen 350 SRQHCFLLQSSGGEPRYFSVELRSELARWENSFQAATFTEV 390 (505)
T ss_pred cccceEEEEcCCCCceEEEEehhhHHHHHHHHHhhHHhHHH
Confidence 567999999864 7899999999999999999999985433
No 362
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=72.40 E-value=1.2e+02 Score=31.24 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC
Q 003309 17 QGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG 63 (832)
Q Consensus 17 ~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~ 63 (832)
..|-+....-+.+-++|.|.++++... .+ ...|..++..+..
T Consensus 26 ~f~keRa~iE~eYak~L~kLakk~~~~-~~----~gsl~~a~~~i~~ 67 (236)
T cd07651 26 SFYKERASIEEEYAKRLEKLSRKSLGG-SE----EGGLKNSLDTLRL 67 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCC-CC----cchHHHHHHHHHH
Confidence 344455555566777888888776542 11 1246666666654
No 363
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=71.94 E-value=1.2e+02 Score=30.92 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhh---CCCCCCCccccCchHH----------HHHHHHHH
Q 003309 20 EESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFG---GGHNDPISVAFGGPVM----------TKFTIALR 86 (832)
Q Consensus 20 E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~---~~~~~~~~~~~~~~~l----------~~f~~~l~ 86 (832)
.++...|+..++...+.+..++.. ...|.+++..-. ...+.......+|.+| ..||.+|.
T Consensus 6 ~ddf~~le~~~d~~~~~~~~l~~~-------~~~y~~~l~k~~~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G~aL~ 78 (215)
T cd07593 6 SEEFLELEKEIELRKEGMERLHRS-------TEAYVEYLSKKKPLLDDKDKCLPVEALGLVMINHGEEFPQDSEYGSCLS 78 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhccCccccccccCChHHHHHHHHHHHHhhCCCCChHHHHHH
Confidence 456677777777777777766665 334566665553 1111222223344455 33555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003309 87 EIGTYKEVLRSQVEHMLNDRLL 108 (832)
Q Consensus 87 ei~~~~~~l~~~~~~~~~~pL~ 108 (832)
.++.....+-. ++..|..++.
T Consensus 79 ~~G~a~~kia~-~q~~f~~~~~ 99 (215)
T cd07593 79 KLGRAHCKIGT-LQEEFADRLS 99 (215)
T ss_pred HHHHHHHHHHH-HHHHHHHHHH
Confidence 55555544442 3444444433
No 364
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.74 E-value=1.8e+02 Score=32.86 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003309 155 EEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQME 213 (832)
Q Consensus 155 ~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~ 213 (832)
+..+..++..|..+.-+|-. ...++++.|=.++.....||.-.++.+-.++
T Consensus 156 ~~k~~KAeeEl~~Aq~~fE~--------lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q 206 (460)
T KOG3771|consen 156 EAKLAKAEEELEKAQQVFEE--------LNNELLEELPALYSSRVGFFVPTFQSLFNLQ 206 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhhhhcchHHHHHHHH
Confidence 34555666666655533322 1225666666777777777765555554433
No 365
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=70.68 E-value=3.5 Score=44.35 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=20.3
Q ss_pred ceeEEEEEEecCCC----CCCCCceeEEEEe
Q 003309 292 QTIRQGYLSKRSSN----LRGDWKRRFFVLD 318 (832)
Q Consensus 292 ~~~k~G~L~K~~~~----~~~~WkrRwfvL~ 318 (832)
.++|+|+|.||..+ .++.||||||.|.
T Consensus 279 ~~~~~~~~~~r~~~~~~~~~~~~k~r~~~lt 309 (310)
T cd05134 279 ILLKEGFMIKRAQGRKRFGMKNFKKRWFRLT 309 (310)
T ss_pred chhhhhhHHHhcccCCcccccchhheeeecC
Confidence 35789999986522 2357999999986
No 366
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=70.35 E-value=1.4e+02 Score=30.93 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhc
Q 003309 118 VKEARKCFDKASLLYDQAREKFLSL 142 (832)
Q Consensus 118 ~ke~rk~fek~~~~yd~al~k~~~~ 142 (832)
+..+|+.|+......+++..|+...
T Consensus 129 l~K~K~~Y~~~~~~~e~ar~K~~~a 153 (234)
T cd07686 129 LEKLKCSYRQLTKEVNSAKEKYKDA 153 (234)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555433
No 367
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=69.96 E-value=2.4e+02 Score=33.51 Aligned_cols=207 Identities=10% Similarity=0.089 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHH
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYK 92 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~ 92 (832)
|..++..++.++.++..++.+......+.+.-.+.........+-+.++.....+.. .-.|+++..+-..+.+++..+
T Consensus 104 ~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~--~~~G~a~~~le~~l~~~e~~f 181 (569)
T PRK04778 104 KHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANR--FSFGPALDELEKQLENLEEEF 181 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ccccchHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777776533322222333344444433211111 113455555555555555554
Q ss_pred HHHHHH--------HH---HHH---HHHHHHHhHhhhH-HHHHHH----HHHHHHhHHHHHHHHHHHhcccCCchhHHhH
Q 003309 93 EVLRSQ--------VE---HML---NDRLLQYVNIDLH-EVKEAR----KCFDKASLLYDQAREKFLSLRKGTKTDVAAI 153 (832)
Q Consensus 93 ~~l~~~--------~~---~~~---~~pL~~f~~~di~-~~ke~r----k~fek~~~~yd~al~k~~~~~k~k~~~~~~e 153 (832)
..+..- +. ..+ +.-|...+.. |+ -+++.+ .+++..+.-|..+..+--.+....-+..+..
T Consensus 182 ~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~-iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~ 260 (569)
T PRK04778 182 SQFVELTESGDYVEAREILDQLEEELAALEQIMEE-IPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQD 260 (569)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHH
Confidence 444311 11 111 2233333333 42 223433 4556677777777776555555444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003309 154 LEEELHSARSAFEQARFSLVTALSN-VEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSR 227 (832)
Q Consensus 154 ~~~~l~~~r~~f~~~sld~~~~l~~-~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~~~~~~r 227 (832)
...++..+...-...-++-+..... ++ +-++.|.+-+..-..-++......+.+..++..+....+...
T Consensus 261 l~~~i~~~~~~l~~l~l~~~~~~~~~i~-----~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~ 330 (569)
T PRK04778 261 LKEQIDENLALLEELDLDEAEEKNEEIQ-----ERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELK 330 (569)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5555555554443333333322111 21 225566666666666666666666666666666655444433
No 368
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=69.07 E-value=0.33 Score=56.54 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=30.9
Q ss_pred CCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 392 DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 392 ~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
+-+..|-|++|-|+..++|++..||..||.+++..-
T Consensus 59 n~~~sf~vi~~~rk~r~~adn~ke~e~wi~~~kt~q 94 (1099)
T KOG1170|consen 59 NPRPSFCVITPVRKHRLCADNRKEMEKWINQSKTPQ 94 (1099)
T ss_pred CCCCCeeEecccHHhhhhccchhHHHHhhccccchh
Confidence 335668899999999999999999999999887553
No 369
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=68.77 E-value=7.5 Score=44.30 Aligned_cols=87 Identities=23% Similarity=0.326 Sum_probs=55.7
Q ss_pred ceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
.+.|+|+|.|+.+-+. +||.|.|.+.+.+.|+........|
T Consensus 450 ~i~k~~~l~k~~~lf~---rkr~lllTn~~rll~~~~~~~~lk~------------------------------------ 490 (604)
T KOG0592|consen 450 LILKEGALEKRQGLFA---RKRMLLLTNGPRLLYVDPQNLVLKG------------------------------------ 490 (604)
T ss_pred hHHhHHHHHhhhhhhh---ceeEEEecCCCeEEEEecccceecc------------------------------------
Confidence 3567888888844333 5799999999999998754332211
Q ss_pred cccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
.|....+.. ... .....|-|-||+|+|+|-- =+.....|-.+|...
T Consensus 491 ----eip~~~~~~-~e~---~n~~~~~i~TP~k~~~l~d-~~~~as~w~~ai~~~ 536 (604)
T KOG0592|consen 491 ----EIPWSPDLR-VEL---KNSSTFFIHTPNKVYYLED-PEQRASVWCKAIETV 536 (604)
T ss_pred ----ccccCcccc-eee---ccCcceEEECCccceeccC-cccchhHHHHhhhhh
Confidence 122221111 111 1234599999999999875 344677899999887
No 370
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=67.96 E-value=2.6e+02 Score=35.50 Aligned_cols=42 Identities=26% Similarity=0.368 Sum_probs=32.9
Q ss_pred CcceEEEecC---CceEEEEeCCHHHHHHHHHHHHHHHHHHHccC
Q 003309 393 LRFCFRIISP---TKNYTLQAESALDQMDWIEKITGVIASLLSSQ 434 (832)
Q Consensus 393 r~~~F~I~t~---~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~ 434 (832)
.+--|-|.+. -..|.|.|-|.+|++.||+.|+.++.+.-.+.
T Consensus 684 ~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~~ 728 (1167)
T KOG3520|consen 684 EKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRNE 728 (1167)
T ss_pred ccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCccc
Confidence 3444666554 26799999999999999999999998765553
No 371
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=67.79 E-value=3.4 Score=44.72 Aligned_cols=28 Identities=29% Similarity=0.666 Sum_probs=21.1
Q ss_pred cceeEEEEEEecCCC----CCCCCceeEEEEe
Q 003309 291 VQTIRQGYLSKRSSN----LRGDWKRRFFVLD 318 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~----~~~~WkrRwfvL~ 318 (832)
..++|+|++.||..+ .++.||||||.|.
T Consensus 284 ~~~~k~g~~~~~~~~~~~~~~~~~k~r~~~lt 315 (315)
T cd05128 284 PVVLKEGFMIKRAQGRGRLGRKNFKKRYFRLT 315 (315)
T ss_pred chhhhhhhhHhhcccCCCccccchhheeeecC
Confidence 346799999888633 3468999999873
No 372
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.55 E-value=2.7e+02 Score=33.21 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003309 155 EEELHSARSAFEQARFSLVTALSNVEAK 182 (832)
Q Consensus 155 ~~~l~~~r~~f~~~sld~~~~l~~~~~~ 182 (832)
-..+..+|+.|++-+-+.+.+++.++..
T Consensus 159 ~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~ 186 (611)
T KOG2398|consen 159 VAKLEKVRKDWEQEMTDLCLKFQEIEES 186 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777877777888777776544
No 373
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=66.48 E-value=1.8e+02 Score=30.72 Aligned_cols=95 Identities=17% Similarity=0.245 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 25 VLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLN 104 (832)
Q Consensus 25 ~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~ 104 (832)
.+...|.+|+|.-|.++.++..+...-...+..|...|...++.+ .....+.+..+.|+.+....+.+.. ..+-
T Consensus 54 e~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl-----~DIsDklgvLl~e~ge~e~~~a~~~-d~yR 127 (271)
T PF13805_consen 54 ELSRKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDL-----SDISDKLGVLLYEIGELEDQYADRL-DQYR 127 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 455778999999998888766666556778888888887643322 3567888888888888877776543 2333
Q ss_pred HHHHHH--hHhhhHHHHHHHHHH
Q 003309 105 DRLLQY--VNIDLHEVKEARKCF 125 (832)
Q Consensus 105 ~pL~~f--~~~di~~~ke~rk~f 125 (832)
..|..+ ..+.|.+.++.|++.
T Consensus 128 ~~LK~IR~~E~sl~p~R~~r~~l 150 (271)
T PF13805_consen 128 IHLKSIRNREESLQPSRDRRRKL 150 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhHHH
Confidence 334443 233455655555544
No 374
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=66.02 E-value=1.1e+02 Score=29.57 Aligned_cols=31 Identities=10% Similarity=0.187 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 11 MFRKQIQGLEESAEVLRERSLKFYKGCRKYT 41 (832)
Q Consensus 11 ~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~ 41 (832)
.|+.++..+.+....++++..+.+|.-++.+
T Consensus 16 ~~~~sls~~~~~~kqve~~~l~~lkqqqd~i 46 (165)
T PF09602_consen 16 QWSQSLSLFASFMKQVEQQTLKKLKQQQDWI 46 (165)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888777777744443
No 375
>PRK12495 hypothetical protein; Provisional
Probab=65.62 E-value=3.8 Score=40.96 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=24.6
Q ss_pred ccCCCCccccCCCCCCCeeecccceeecccchhh
Q 003309 508 RVCGNDRCADCGAPEPDWASLNLGVLVCIECSGV 541 (832)
Q Consensus 508 ~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~ 541 (832)
..+.+..|.+||.+-|. + =|+.+|..|..+
T Consensus 38 atmsa~hC~~CG~PIpa---~-pG~~~Cp~CQ~~ 67 (226)
T PRK12495 38 ATMTNAHCDECGDPIFR---H-DGQEFCPTCQQP 67 (226)
T ss_pred cccchhhcccccCcccC---C-CCeeECCCCCCc
Confidence 34689999999999993 2 599999999644
No 376
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=64.79 E-value=1.8e+02 Score=30.28 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 003309 19 LEESAEVLRERSLKFYKGCRKYTEGLGEGY 48 (832)
Q Consensus 19 ~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~ 48 (832)
+.++...+++.++.+.+.+..++..+....
T Consensus 13 l~d~~~~lE~~~d~~k~~~~~~~k~~~~~l 42 (244)
T cd07595 13 LSDELLQIEKRVEAVKDACQNIHKKLISCL 42 (244)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence 456777888889888888888887533333
No 377
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=64.16 E-value=2.9e+02 Score=32.35 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=25.0
Q ss_pred CCcceEEEec----CC--ceEEEEeCCHHHHHHHHHHH
Q 003309 392 DLRFCFRIIS----PT--KNYTLQAESALDQMDWIEKI 423 (832)
Q Consensus 392 ~r~~~F~I~t----~~--rt~~lqA~s~~e~~~Wi~ai 423 (832)
.+++.|.+.- .+ -.|.|+|+|+.||+.||.|+
T Consensus 553 ~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al 590 (695)
T KOG3523|consen 553 SRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISAL 590 (695)
T ss_pred cccceEEEehhhccCCCceeeeecCCchHHHHHHHHhc
Confidence 4567777643 22 36999999999999999986
No 378
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=63.88 E-value=1.7e+02 Score=29.56 Aligned_cols=120 Identities=12% Similarity=0.089 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC---CCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 24 EVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG---HNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (832)
Q Consensus 24 ~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~---~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~ 100 (832)
..++.---.+..-++.+.+++...|.++..++.+-...... .+....+ ++..=...+.+++++......+. ...
T Consensus 5 ~v~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~s~~l~~~~~~~~~--~~~~D~~v~~sL~kFs~~L~el~-~~h 81 (215)
T cd07632 5 SVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFA--LGKGDEEVISTLQYFAKVVDELN-VLH 81 (215)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCC--CCCCcHHHHHHHHHHHHHHHHHH-HHH
Confidence 34455555666666777777777777777766666555432 2222211 11122344566777766665554 445
Q ss_pred HHHHHHHHHHhHhhhHHH-HHHHHHHHHHhHHHHHHHHHH-HhcccCC
Q 003309 101 HMLNDRLLQYVNIDLHEV-KEARKCFDKASLLYDQAREKF-LSLRKGT 146 (832)
Q Consensus 101 ~~~~~pL~~f~~~di~~~-ke~rk~fek~~~~yd~al~k~-~~~~k~k 146 (832)
..+++.++.-+..-|..+ ++--+.|....+.||...++| .++.|..
T Consensus 82 ~~L~dqaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~Kna 129 (215)
T cd07632 82 SELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYS 129 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 566666665555555544 345555666667777666664 4445444
No 379
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=63.66 E-value=1.8e+02 Score=29.74 Aligned_cols=88 Identities=13% Similarity=0.113 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHhhhcccc-hhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 27 RERSLKFYKGCRKYTEGLGEGY-DGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLND 105 (832)
Q Consensus 27 ~~~l~kl~k~~~~~~~~~~~~~-~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~ 105 (832)
+..++++.-..++++.. +..| .+-.+.+.+...|..........+...+.-..+|.++.+|...+..+-.+....
T Consensus 2 ~~i~~~~~P~~e~lv~~-~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~r~i~~~~~~~--- 77 (219)
T PF08397_consen 2 QNIMEDFNPAWENLVSL-GKKYQKALRAMSQAAAAFFDALQKIGDMASNSRGSKELGDALMQISEVHRRIENELEEV--- 77 (219)
T ss_dssp HHHHHTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred hhHHhhcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34566777777788875 4434 334555555555544322111111112235677888888888777666544433
Q ss_pred HHHHHhHhhhHHHH
Q 003309 106 RLLQYVNIDLHEVK 119 (832)
Q Consensus 106 pL~~f~~~di~~~k 119 (832)
.+.|..+-|.|+.
T Consensus 78 -~~~~~~~li~pLe 90 (219)
T PF08397_consen 78 -FKAFHSELIQPLE 90 (219)
T ss_dssp -HHHHHHHTHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 3344444444444
No 380
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=63.63 E-value=2e+02 Score=30.32 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=26.3
Q ss_pred HHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 003309 107 LLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSL 142 (832)
Q Consensus 107 L~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~ 142 (832)
++.=+..-++++...||.|++...+=..|..||..+
T Consensus 121 lQ~eL~~~~keL~ksKK~Y~~~~~ea~~A~~K~~e~ 156 (263)
T cd07678 121 AQAELLETVKELSKSKKLYGQLERVSEVAKEKAADV 156 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444556677888999998888888888888633
No 381
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=63.33 E-value=1.8e+02 Score=29.78 Aligned_cols=106 Identities=8% Similarity=0.044 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 003309 25 VLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVL---RSQVEH 101 (832)
Q Consensus 25 ~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l---~~~~~~ 101 (832)
.-+..|+.|-...+.+.............++.++.+|+.....+.. +...+. .+.++..+++....+ ......
T Consensus 16 ~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~-~E~~~~---Ls~al~~la~~~~ki~~~~~~qa~ 91 (224)
T cd07623 16 EKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSN-CEEHTS---LSRALSQLAEVEEKIEQLHGEQAD 91 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccchh---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555566655455555567788888888765433221 222222 355555555554443 333344
Q ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHH
Q 003309 102 MLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQ 134 (832)
Q Consensus 102 ~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~ 134 (832)
.-..++...++.-++-+.-.|.-|.....-|..
T Consensus 92 ~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~ 124 (224)
T cd07623 92 TDFYILAELLKDYIGLIGAIKDVFHERVKVWQN 124 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666667777777777888888877666543
No 382
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=62.35 E-value=62 Score=25.85 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=38.4
Q ss_pred hHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHH
Q 003309 111 VNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQAR 169 (832)
Q Consensus 111 ~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~s 169 (832)
++..+..+-..|++..-.+.-|+ |...+.| .|.++++.+..|.+.|..|..-.
T Consensus 6 L~~QLd~I~~~K~~l~ik~~H~E----kl~kitK--~p~El~~i~~kl~~~R~~FLn~~ 58 (62)
T PF06034_consen 6 LTQQLDEINQMKRQLTIKSQHWE----KLKKITK--NPKELQEIEKKLQELRQNFLNFG 58 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHhccC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777888777776664 5555665 47778999999999999996543
No 383
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=61.25 E-value=14 Score=30.78 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=39.7
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 003309 742 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 795 (832)
Q Consensus 742 TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ 795 (832)
..|..|+..|+.++++.+++.+ .++ ...+..|+..-+.+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 4689999999999999999765 222 4579999999999999999986
No 384
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=60.70 E-value=11 Score=40.68 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=29.7
Q ss_pred ceEEEecCC----ceEEEEeCCHHHHHHHHHHHHHHHHHHHc
Q 003309 395 FCFRIISPT----KNYTLQAESALDQMDWIEKITGVIASLLS 432 (832)
Q Consensus 395 ~~F~I~t~~----rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 432 (832)
..|-+-|.. .++.|.+||..|+..|...|-..+..+.+
T Consensus 365 lsFa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch~Aae 406 (506)
T KOG3551|consen 365 LSFATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCHEAAE 406 (506)
T ss_pred EEEEEecccccceEEEEEEeccHHHHHHHHHHHHHHHHHHHH
Confidence 456666655 58999999999999999988777655544
No 385
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=60.42 E-value=2.1e+02 Score=29.58 Aligned_cols=118 Identities=10% Similarity=0.057 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHH---HHHHHH
Q 003309 24 EVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV---LRSQVE 100 (832)
Q Consensus 24 ~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~---l~~~~~ 100 (832)
+..+.+++.|-...+++...+.........++.++.+|+.....+... ..++.| +.++..+.+.... +.....
T Consensus 25 ~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~-E~~~~l---s~~l~~laev~~ki~~~~~~qa 100 (234)
T cd07664 25 EEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNS-EDHTAL---SRALSQLAEVEEKIDQLHQDQA 100 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cccchH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554444444577888888887754443322 233334 4444444444333 333333
Q ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccC
Q 003309 101 HMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKG 145 (832)
Q Consensus 101 ~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~ 145 (832)
..-.-.+...+++.|+-+.-.|--|.....-|.....--..+.|+
T Consensus 101 ~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kk 145 (234)
T cd07664 101 FADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKK 145 (234)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666788889999999999998888877655554444443
No 386
>PRK11019 hypothetical protein; Provisional
Probab=60.22 E-value=2.8 Score=36.00 Aligned_cols=39 Identities=26% Similarity=0.629 Sum_probs=28.7
Q ss_pred CCCccccCCCCCC--CeeecccceeecccchhhhhccCCccc
Q 003309 511 GNDRCADCGAPEP--DWASLNLGVLVCIECSGVHRNLGVHIS 550 (832)
Q Consensus 511 ~n~~c~dc~~~~p--~w~s~n~g~~~c~~Csg~hr~lg~~~s 550 (832)
+-..|.+||.+-| .|.-+. |+..|++|...+-..+.|..
T Consensus 35 syg~C~~CG~~Ip~~Rl~A~P-~a~~Cv~Cq~~~E~~~k~~~ 75 (88)
T PRK11019 35 SLTECEECGEPIPEARRKAIP-GVRLCVACQQEKDLQQAAFS 75 (88)
T ss_pred cCCeeCcCCCcCcHHHHhhcC-CccccHHHHHHHHHHHhHhc
Confidence 4579999999866 444333 78899999998876655544
No 387
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=60.07 E-value=1.9e+02 Score=28.91 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHH--hHhhh--HHHHHHHHHHHHHhHHHHHHHHHHHhcccCC
Q 003309 96 RSQVEHMLNDRLLQY--VNIDL--HEVKEARKCFDKASLLYDQAREKFLSLRKGT 146 (832)
Q Consensus 96 ~~~~~~~~~~pL~~f--~~~di--~~~ke~rk~fek~~~~yd~al~k~~~~~k~k 146 (832)
+..+++.+..-.+++ =|.|| ..|.++|...+.+++.|.++|+++.++..-.
T Consensus 4 l~gCqsaYY~amEkvG~hKRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ 58 (201)
T PF11172_consen 4 LTGCQSAYYSAMEKVGVHKRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFD 58 (201)
T ss_pred HHHhHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 345555566666665 23333 5788999999999999999999999887654
No 388
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=59.27 E-value=16 Score=39.66 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=40.4
Q ss_pred ccccccccccccCC-cccCCcceEEEecCC--ceEEEEeCCHHHHHHHHHHHHHHHHHHHc
Q 003309 375 HTVNLLTSTIKVDA-DQSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIASLLS 432 (832)
Q Consensus 375 ~~i~l~~~~v~~~~-~~~~r~~~F~I~t~~--rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 432 (832)
..|.|..|-+-... ...-...||||-+|+ -|++|.|.+.++.+.|..||..++..++.
T Consensus 216 k~IpLKm~yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~ll~ 276 (506)
T KOG3551|consen 216 KTIPLKMAYVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNTLLT 276 (506)
T ss_pred cccchhhHHHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhhHHH
Confidence 34556555543211 111124579999997 58999999999999999999988765543
No 389
>TIGR02419 C4_traR_proteo phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA.
Probab=59.12 E-value=3.3 Score=33.19 Aligned_cols=33 Identities=30% Similarity=0.661 Sum_probs=23.8
Q ss_pred cCCCCccccCCCCCC--Ceeecccceeecccchhhh
Q 003309 509 VCGNDRCADCGAPEP--DWASLNLGVLVCIECSGVH 542 (832)
Q Consensus 509 ~~~n~~c~dc~~~~p--~w~s~n~g~~~c~~Csg~h 542 (832)
.++...|.|||.+-| .|.- .-|+..|+.|...+
T Consensus 28 ~~s~g~C~~Cg~~Ip~~Rl~a-~p~~~~Cv~Cq~~~ 62 (63)
T TIGR02419 28 GPSLRECEDCGEPIPEARREA-LPGVTRCVSCQEIL 62 (63)
T ss_pred CCCCCeeccCCCcChHHHHhh-cCCcCCcHHHHhhc
Confidence 467789999999766 3322 23788999997654
No 390
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=58.28 E-value=2.5e+02 Score=29.68 Aligned_cols=93 Identities=6% Similarity=-0.044 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC-------CCCCCccccCchHHHHHH---HHHHHH
Q 003309 19 LEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG-------HNDPISVAFGGPVMTKFT---IALREI 88 (832)
Q Consensus 19 ~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~-------~~~~~~~~~~~~~l~~f~---~~l~ei 88 (832)
+-++++.|..|.+.=+....+|.+-..+-...+..|+..|..+... ..+...+.....++.-|. ..+..+
T Consensus 3 ~~Eq~~~L~~~~~~~i~lLedi~~F~reRa~IE~EYa~~L~kLakky~~Kk~~~~~~~~~~~~~s~~~~W~~~L~qt~~~ 82 (264)
T cd07654 3 HLEQLSKLQAKHQTECDLLEDIRTYSQKKAAIEREYGQALQKLASQFLKREWPGSGELKPEDDRSGYTVWGAWLEGLDAV 82 (264)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccccchHHHHHHHHHHHHHHH
Confidence 3456677777766555444444433333333456788887665321 011111111112333333 344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 003309 89 GTYKEVLRSQVEHMLNDRLLQYV 111 (832)
Q Consensus 89 ~~~~~~l~~~~~~~~~~pL~~f~ 111 (832)
..-+..+.......+..+|..+.
T Consensus 83 A~~~~~~ae~l~~~i~~~l~~l~ 105 (264)
T cd07654 83 AQSRQNRCEAYRRYISEPAKTGR 105 (264)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Confidence 55566666666677777765554
No 391
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=58.24 E-value=3.6e+02 Score=31.51 Aligned_cols=230 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHH
Q 003309 12 FRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTY 91 (832)
Q Consensus 12 FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~ 91 (832)
+|..+..++..+..++.-+.-+....+.+.+...........+-..|.......+++...- -..-.+....+.+|.-.
T Consensus 139 ~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr--~d~~n~~q~Lleel~f~ 216 (546)
T KOG0977|consen 139 AREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR--VDLQNRVQTLLEELAFL 216 (546)
T ss_pred hHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHH-HHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHH--------------H
Q 003309 92 KEVLRSQVEHMLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILE--------------E 156 (832)
Q Consensus 92 ~~~l~~~~~~~~~~pL~~f~~~di~~~k-e~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~--------------~ 156 (832)
....-..+......+-.......=..|+ +.......++..||.....+..-=..--..+++++. +
T Consensus 217 ~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rE 296 (546)
T KOG0977|consen 217 KRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYARE 296 (546)
T ss_pred HhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH---
Q 003309 157 ELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELL-HQMEPYINQVLTYAQQSRERSNY--- 232 (832)
Q Consensus 157 ~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~-~~l~~~~~~l~~~~~~~r~~~~~--- 232 (832)
++...|..- -++=.+|.+++.+. -.++..+..+.-|..==++.|+.. .+.+.-+..|...++....++++
T Consensus 297 El~~~R~~i----~~Lr~klselE~~n--~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD 370 (546)
T KOG0977|consen 297 ELRRIRSRI----SGLRAKLSELESRN--SALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLD 370 (546)
T ss_pred HHHHHHhcc----cchhhhhccccccC--hhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred HHHHHHHHHHHHHhhhh
Q 003309 233 EQAALNERMQEYKRQID 249 (832)
Q Consensus 233 ~~~~l~~~~~~~~~~~~ 249 (832)
-+..|..++..|++.++
T Consensus 371 ~ki~Ld~EI~~YRkLLe 387 (546)
T KOG0977|consen 371 TKISLDAEIAAYRKLLE 387 (546)
T ss_pred hHhHHHhHHHHHHHHhc
No 392
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=58.19 E-value=7.4 Score=28.10 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=27.7
Q ss_pred CCccccCCCCCCCeeecccceeecccchhh-hhc
Q 003309 512 NDRCADCGAPEPDWASLNLGVLVCIECSGV-HRN 544 (832)
Q Consensus 512 n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~-hr~ 544 (832)
+..|..|+.....+-..+-++++|..|... |+.
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~ 36 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG 36 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT
T ss_pred CccCccCCccceEEEecCCCCccCccCCCCCCCC
Confidence 467888888778888999999999999988 885
No 393
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=57.79 E-value=2.3e+02 Score=29.11 Aligned_cols=171 Identities=12% Similarity=0.050 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (832)
Q Consensus 21 ~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~ 100 (832)
.+.+..+..+..+-+.+++++..+.....+...+..+-..++....+...+...+ .... +.......+..+.
T Consensus 11 ~~F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~lY~p~~~~-~~~~-------~~~~y~~~v~~l~ 82 (224)
T cd07591 11 REFEFEERRYRTMEKASTKLQKEAKGYLDSLRALTSSQARIAETISSFYGDAGDK-DGAM-------LSQEYKQAVEELD 82 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cHhH-------HHHHHHHHHHHHH
Confidence 4556777778888888888887644433333444444444444333333322111 1111 1111122222333
Q ss_pred HHHHHHHHH-HhHhhhHHHHHHHHHHHHHhHHH---HHHHHHHHhcccCCchhHHh----HHHHHHHHHHHHHHHHHHHH
Q 003309 101 HMLNDRLLQ-YVNIDLHEVKEARKCFDKASLLY---DQAREKFLSLRKGTKTDVAA----ILEEELHSARSAFEQARFSL 172 (832)
Q Consensus 101 ~~~~~pL~~-f~~~di~~~ke~rk~fek~~~~y---d~al~k~~~~~k~k~~~~~~----e~~~~l~~~r~~f~~~sld~ 172 (832)
..+..-+.. +-+.-+.|+.+..+.|...+..- +..+--|-+.+.+ -++++ ..+..|..+.+.+..+.-+|
T Consensus 83 ~~~~~el~~~~~~~V~~Pl~~~~~~~~~i~k~IkKR~~KllDYD~~~~k--~~kl~~K~~kd~~kL~kae~el~~a~~~Y 160 (224)
T cd07591 83 AETVKELDGPYRQTVLDPIGRFNSYFPEINEAIKKRNHKLLDYDAARAK--VRKLIDKPSEDPTKLPRAEKELDEAKEVY 160 (224)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHhhHHHHHHH--HHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 333333333 44455566666666666554432 2222233322211 11111 12356777777777776555
Q ss_pred HHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 173 VTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELL 209 (832)
Q Consensus 173 ~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~ 209 (832)
-. + +-.+.+.|=.++..-..||.-..+.+
T Consensus 161 e~-l-------N~~Lk~ELP~l~~~r~~~l~~~f~s~ 189 (224)
T cd07591 161 ET-L-------NDQLKTELPQLVDLRIPYLDPSFEAF 189 (224)
T ss_pred HH-H-------HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44 2 22455566666666666665554444
No 394
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=54.72 E-value=18 Score=30.07 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=38.0
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhC
Q 003309 775 TPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS 830 (832)
Q Consensus 775 TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~ 830 (832)
.-|..|...|+.++++.+++.+ .++ ...+..|+..-+ -++++.|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~--n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHN--NEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhh--HHHHHHHHHh
Confidence 4688999999999999999765 221 357899999877 7899999874
No 395
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=53.99 E-value=2.4 Score=48.73 Aligned_cols=37 Identities=27% Similarity=0.589 Sum_probs=25.6
Q ss_pred ceeEEEEEEecCCC--CCCCCceeEEEEeCCceEEEEec
Q 003309 292 QTIRQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRK 328 (832)
Q Consensus 292 ~~~k~G~L~K~~~~--~~~~WkrRwfvL~~~~~l~yy~~ 328 (832)
+...+|||+++..+ ....|+|-||+|.++-++.|...
T Consensus 561 ~G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~ 599 (638)
T KOG1738|consen 561 RGDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNH 599 (638)
T ss_pred cchhhccchhhccchHHHHHhhhheeeecCchhhhhhhh
Confidence 34579999987544 23469999999996555555433
No 396
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=53.92 E-value=4.2e+02 Score=30.96 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003309 13 RKQIQGLEESAEVLRERSLKFYKGCRKYTEGLG 45 (832)
Q Consensus 13 Ra~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~ 45 (832)
+++|..+..+.+.+.+.-.++ +.|....+.+.
T Consensus 3 ~~si~dy~~e~~~~~~Lh~~i-~~cd~~L~~le 34 (508)
T PF04129_consen 3 RESIQDYLKESENFADLHNQI-QECDSILESLE 34 (508)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 467778888777777766666 56777776533
No 397
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=52.04 E-value=15 Score=41.85 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=26.2
Q ss_pred CCcceEEEecCCceEEEEeCC------------HHHHHHHHHHHHHHHH
Q 003309 392 DLRFCFRIISPTKNYTLQAES------------ALDQMDWIEKITGVIA 428 (832)
Q Consensus 392 ~r~~~F~I~t~~rt~~lqA~s------------~~e~~~Wi~ai~~~i~ 428 (832)
..++||||.|.. +.+|-.++ .+-.+.|-.||+.+..
T Consensus 477 ~~phcFEI~T~~-~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alM 524 (888)
T KOG4236|consen 477 TNPHCFEIRTAT-TVYFVGENPSSTPGGESGVGLDAAQGWETAIQQALM 524 (888)
T ss_pred CCCceEEEEeee-EEEEecCCCCCCccccccccchhhccCchhhhhccc
Confidence 347999999988 55566666 3337889998887653
No 398
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=50.71 E-value=2.9e+02 Score=28.12 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=60.5
Q ss_pred HHHHHHHHH---HHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSL---KFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQV 99 (832)
Q Consensus 23 i~~l~~~l~---kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~ 99 (832)
|..++..|+ ..+..+++++.+ .+.+...++++-..|..+.+++-+.++. .-=...+.++-.+......|. ..
T Consensus 4 ~~~~ee~l~~d~~~l~~~kk~~k~---~~~sG~~yv~~~~~f~~~L~~LG~~~l~-~dd~~~~~~l~kf~~~~~El~-~l 78 (215)
T cd07642 4 VVAIEEALDVDRTVLYKMKKSVKA---IHTSGLAHVENEEQYTQALEKFGSNCVC-RDDPDLGSAFLKFSVFTKELT-AL 78 (215)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcccC-CCcHHHHHHHHHHHHHHHHHH-HH
Confidence 344555544 345556666666 3345667777777777665555433211 111344566666666555554 34
Q ss_pred HHHHHHHHHHHhHhhhHHH-HHHHHHH-HHHhHHHHHHHHHHH
Q 003309 100 EHMLNDRLLQYVNIDLHEV-KEARKCF-DKASLLYDQAREKFL 140 (832)
Q Consensus 100 ~~~~~~pL~~f~~~di~~~-ke~rk~f-ek~~~~yd~al~k~~ 140 (832)
...+.+.+++.+..-+..+ |+--|.+ +....-||.+..-|-
T Consensus 79 ~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE 121 (215)
T cd07642 79 FKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYE 121 (215)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4555666666665555443 3344444 355555666555553
No 399
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=50.12 E-value=12 Score=26.29 Aligned_cols=25 Identities=32% Similarity=0.860 Sum_probs=21.2
Q ss_pred CCccccCCCCCCCeeecccceeecccch
Q 003309 512 NDRCADCGAPEPDWASLNLGVLVCIECS 539 (832)
Q Consensus 512 n~~c~dc~~~~p~w~s~n~g~~~c~~Cs 539 (832)
|..|..|++. |...+=|-+.|.+|-
T Consensus 8 ~~~C~~C~~~---~~~~~dG~~yC~~cG 32 (36)
T PF11781_consen 8 NEPCPVCGSR---WFYSDDGFYYCDRCG 32 (36)
T ss_pred CCcCCCCCCe---EeEccCCEEEhhhCc
Confidence 4569999988 778888999999993
No 400
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=49.90 E-value=2.8e+02 Score=27.77 Aligned_cols=72 Identities=17% Similarity=0.286 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHH
Q 003309 152 AILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQG--YELLHQMEPYINQVLTYAQQSRER 229 (832)
Q Consensus 152 ~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g--~~~~~~l~~~~~~l~~~~~~~r~~ 229 (832)
+..+.+|..+|..|.+ ++..|...+.+ +++++.-++.+.-|-+-- ..-+..|++.+..+...+......
T Consensus 115 ~~S~~kL~~tr~~Y~~----L~~aM~~Ae~k-----m~PVL~~~~D~vL~LKHNLNA~AI~sL~~e~~~~~~di~~Li~~ 185 (201)
T PF11172_consen 115 RASEQKLAETRRRYAQ----LIKAMRRAESK-----MQPVLAAFRDQVLYLKHNLNAQAIASLQGEFSSIESDISQLIKE 185 (201)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHh-----cChHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999954 56677777666 567777788888887422 223355666677666666555544
Q ss_pred HHH
Q 003309 230 SNY 232 (832)
Q Consensus 230 ~~~ 232 (832)
.+.
T Consensus 186 m~~ 188 (201)
T PF11172_consen 186 MER 188 (201)
T ss_pred HHH
Confidence 433
No 401
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=49.89 E-value=3.1e+02 Score=28.34 Aligned_cols=80 Identities=10% Similarity=0.165 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhCCC----CCCCccccCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHhhhHHHHHHHH
Q 003309 51 DIAFASALETFGGGH----NDPISVAFGGPVMTKFTIALREIGTYKE---VLRSQVEHMLNDRLLQYVNIDLHEVKEARK 123 (832)
Q Consensus 51 ~~~f~~~l~~f~~~~----~~~~~~~~~~~~l~~f~~~l~ei~~~~~---~l~~~~~~~~~~pL~~f~~~di~~~ke~rk 123 (832)
++.|+..|..+.... .+... ..+.+..-|...+.+++..-. .+...++..+...|..++ ...+..||
T Consensus 35 EkEYA~~L~~L~kq~~kk~~~~~~--~~s~v~~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~----~~~~~~~k 108 (234)
T cd07686 35 DKEYASTLQNLCNQVDKESTSQLD--YVSNVSKSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMI----KDKQQVKK 108 (234)
T ss_pred HHHHHHHHHHHHHHhcccCccccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHH
Confidence 567777776654321 11111 122333566666666665543 444444444444444443 33466677
Q ss_pred HHHHHhHHHHHHH
Q 003309 124 CFDKASLLYDQAR 136 (832)
Q Consensus 124 ~fek~~~~yd~al 136 (832)
.|.....+...-+
T Consensus 109 ~~~~~~~kl~~e~ 121 (234)
T cd07686 109 SYIGVHQQIEAEM 121 (234)
T ss_pred HHHHHHHHHHHHH
Confidence 7666655554443
No 402
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=49.74 E-value=4.3e+02 Score=29.90 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=22.1
Q ss_pred hHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 003309 111 VNIDLHEVKEARKCFDKASLLYDQAREK 138 (832)
Q Consensus 111 ~~~di~~~ke~rk~fek~~~~yd~al~k 138 (832)
+...+..+.+.+..|+.....|++.+..
T Consensus 327 i~~~~~~l~~L~~~Y~~F~~aY~~LL~E 354 (412)
T PF04108_consen 327 IQAYIDELEQLCEFYEGFLSAYDSLLLE 354 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667889999999999999986665
No 403
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=49.44 E-value=3e+02 Score=27.99 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 155 EEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (832)
Q Consensus 155 ~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 211 (832)
+..|..+...+..+.-+|-. + .-++++.|=.++..-..||.-.++.+-.
T Consensus 138 e~KL~kae~el~~Ak~~Ye~-l-------N~~L~~ELP~L~~~ri~f~~p~F~sl~~ 186 (211)
T cd07588 138 DQKLTKAEEELQQAKKVYEE-L-------NTELHEELPALYDSRIAFYVDTLQSIFA 186 (211)
T ss_pred HhhHHHHHHHHHHHHHHHHH-H-------HHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 45677777777666655543 2 2256666777777777777766665533
No 404
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=47.92 E-value=4.6e+02 Score=29.69 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
Q 003309 159 HSARSAFEQARFSLVTALSNVEAKK 183 (832)
Q Consensus 159 ~~~r~~f~~~sld~~~~l~~~~~~~ 183 (832)
...-..|....-.|+..+.++..+.
T Consensus 296 ~~~l~~~~~~l~~yl~~~~~~~~~~ 320 (412)
T PF04108_consen 296 LEELRKFGERLPSYLAAFHDFEERW 320 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445556776666666543
No 405
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=47.12 E-value=5.3e+02 Score=30.15 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=37.8
Q ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHh-cccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 102 MLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLS-LRKGTKTDVAAILEEELHSARSAFEQARFSLVTALS 177 (832)
Q Consensus 102 ~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~-~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~ 177 (832)
.+...+.++++. ..+.-+.=.++|.+-..|+..+.+|+. ++++.=.++..+.-.++..+=.++++.. |++.+|-
T Consensus 349 ~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE~Ig-Diie~l~ 423 (533)
T COG1283 349 QMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLEHIG-DIIERLL 423 (533)
T ss_pred HHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence 444555566655 344444455566677777788888864 4554322222222223333334555555 5555433
No 406
>PHA00080 DksA-like zinc finger domain containing protein
Probab=46.99 E-value=7.3 Score=32.18 Aligned_cols=33 Identities=24% Similarity=0.746 Sum_probs=23.8
Q ss_pred CCCCccccCCCCCC--Ceeecccceeecccchhhhh
Q 003309 510 CGNDRCADCGAPEP--DWASLNLGVLVCIECSGVHR 543 (832)
Q Consensus 510 ~~n~~c~dc~~~~p--~w~s~n~g~~~c~~Csg~hr 543 (832)
++...|.+||.+-| .|.-+. |+..|++|...+-
T Consensus 29 ~~~~~C~~Cg~~Ip~~Rl~a~P-~~~~Cv~Cq~~~E 63 (72)
T PHA00080 29 PSATHCEECGDPIPEARREAVP-GCRTCVSCQEILE 63 (72)
T ss_pred CCCCEecCCCCcCcHHHHHhCC-CccCcHHHHHHHH
Confidence 45678999999765 443333 6788999988754
No 407
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=46.83 E-value=35 Score=33.56 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=20.7
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHH
Q 003309 745 HLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 793 (832)
Q Consensus 745 h~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll 793 (832)
..|+..|-...+--.|++|.+++. +.|..|+.++|..++.+++
T Consensus 148 ~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi 190 (192)
T PF03158_consen 148 EKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFI 190 (192)
T ss_pred HHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence 344555555544444455544432 4455555555555544443
No 408
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=46.41 E-value=3.3e+02 Score=27.65 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (832)
Q Consensus 21 ~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~ 100 (832)
..|+.|+..|+++.+.+..++.. ...++.++.+|+.....+.. .... ...+..+..+......+.....
T Consensus 11 ~~i~~Le~~Lk~l~~~~~~l~~~-------r~ela~~~~efa~~~~~L~~-~E~~---~~l~~~l~~~a~~~~~~~~~~~ 79 (216)
T cd07627 11 QYLDSLESQLKQLYKSLELVSSQ-------RKELASATEEFAETLEALSS-LELS---KSLSDLLAALAEVQKRIKESLE 79 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-hhcc---hHhHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999888887775 34688888888775433321 1122 2344555555555555544333
Q ss_pred HHHHH---HHHHHhHhhhHHHHHHHHHHHHHhHHHH
Q 003309 101 HMLND---RLLQYVNIDLHEVKEARKCFDKASLLYD 133 (832)
Q Consensus 101 ~~~~~---pL~~f~~~di~~~ke~rk~fek~~~~yd 133 (832)
..-.+ .|...++..++-+.-.|.-|......+.
T Consensus 80 ~~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~ 115 (216)
T cd07627 80 RQALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQ 115 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 3444577777777778888877766543
No 409
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=46.38 E-value=26 Score=40.20 Aligned_cols=53 Identities=19% Similarity=0.383 Sum_probs=37.7
Q ss_pred cccccccccccC--CcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 376 TVNLLTSTIKVD--ADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 376 ~i~l~~~~v~~~--~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.|.+..|.+..+ ....|..+.|.++-....|+|.|++++-.+.|++.+..|..
T Consensus 542 ~iPl~~~~v~~pe~~~~~D~~~~~k~~~s~~~~~~~a~~~q~qq~wl~~l~~A~~ 596 (623)
T KOG4424|consen 542 TIPLPGVEVTIPEFVRREDLFHVFKLVQSHLSWHLAADDEQLQQRWLEVLLLAVS 596 (623)
T ss_pred ccccCccccCCCcccccchhcchhhhhhhcceeeeccCCHHHHHHHHHHHHhhhc
Confidence 355666666532 12235556666677778999999999999999999887753
No 410
>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....
Probab=46.34 E-value=16 Score=25.66 Aligned_cols=31 Identities=26% Similarity=0.726 Sum_probs=22.4
Q ss_pred cccCCCC-CCCeeeccccee-ecccchhhhhcc
Q 003309 515 CADCGAP-EPDWASLNLGVL-VCIECSGVHRNL 545 (832)
Q Consensus 515 c~dc~~~-~p~w~s~n~g~~-~c~~Csg~hr~l 545 (832)
|..|+.. .|.|-....|.. +|-.|---+|.-
T Consensus 1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~ 33 (36)
T PF00320_consen 1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKY 33 (36)
T ss_dssp -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHH
T ss_pred CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHh
Confidence 8899987 599999999988 999996666543
No 411
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=45.43 E-value=3.3e+02 Score=27.22 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 003309 23 AEVLRERSLKFYKGCRKYTEG 43 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~ 43 (832)
+..+....+.+.+.++.+.+.
T Consensus 5 ~~el~~~~~~~~~~~~~~~~~ 25 (204)
T PF04740_consen 5 VSELHSQAESTNSSLKELKEQ 25 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544
No 412
>PRK13715 conjugal transfer protein TraR; Provisional
Probab=44.28 E-value=6.4 Score=32.59 Aligned_cols=35 Identities=29% Similarity=0.653 Sum_probs=23.2
Q ss_pred CCCccccCCCCCCCeee-cccceeecccchhhhhcc
Q 003309 511 GNDRCADCGAPEPDWAS-LNLGVLVCIECSGVHRNL 545 (832)
Q Consensus 511 ~n~~c~dc~~~~p~w~s-~n~g~~~c~~Csg~hr~l 545 (832)
+...|.|||.+-|.==- .-=|+..|++|...+-.-
T Consensus 33 ~~~~C~~Cg~~Ip~~Rl~a~p~~~~Cv~Cq~~~E~~ 68 (73)
T PRK13715 33 PVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 (73)
T ss_pred CcccHhhcCCcCCHHHHhcCCCcCCCHHHHHHHHHH
Confidence 34689999997662111 112788999998876543
No 413
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=43.84 E-value=3.7e+02 Score=27.37 Aligned_cols=50 Identities=10% Similarity=0.289 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003309 155 EEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (832)
Q Consensus 155 ~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l 212 (832)
+..|..+...+..|.-+|-. +|. .+.+.|=.++..-..||.-.++.+-.+
T Consensus 138 e~KL~kAe~el~~Ak~~ye~-lN~-------~Lk~ELP~L~~~Ri~f~~psFeal~~~ 187 (211)
T cd07611 138 EGRIAKAEEEFQKAQKVFEE-FNV-------DLQEELPSLWSRRVGFYVNTFKNVSSL 187 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHhhhHHhhhhHHHHHHH
Confidence 45677777777666644433 222 455666666667777776666665433
No 414
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=42.32 E-value=17 Score=39.68 Aligned_cols=25 Identities=24% Similarity=0.712 Sum_probs=17.2
Q ss_pred eEEEEEE-ecCCC----CCCCCceeEEEEe
Q 003309 294 IRQGYLS-KRSSN----LRGDWKRRFFVLD 318 (832)
Q Consensus 294 ~k~G~L~-K~~~~----~~~~WkrRwfvL~ 318 (832)
.|+|.++ ||..+ ..+.||||||.|.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 331 (337)
T cd05395 302 VKEGFLFLHRTKGKGPLMTSPFKKLYFTLT 331 (337)
T ss_pred HHHHHHHHHhccCCCCccccchhhheeeee
Confidence 3566665 66522 2368999999997
No 415
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=42.30 E-value=15 Score=39.00 Aligned_cols=41 Identities=32% Similarity=0.550 Sum_probs=36.6
Q ss_pred CcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 393 LRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 393 r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
-+.+..|.+..+.+.+-|.+..|+.+|+..|..+....++.
T Consensus 106 ~~~~~~~~S~~ks~~~~~as~~ek~e~~~~i~~~~~~~l~~ 146 (288)
T KOG1729|consen 106 VRNGWQILSALKSFTVLAASQTEKNEWQNHITECVEDLLSK 146 (288)
T ss_pred cccchhhhcccchhhhhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999888875
No 416
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=42.21 E-value=43 Score=40.00 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=39.2
Q ss_pred cccccccccccCC-cccCCcceEEEec---CCceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 376 TVNLLTSTIKVDA-DQSDLRFCFRIIS---PTKNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 376 ~i~l~~~~v~~~~-~~~~r~~~F~I~t---~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
..++..+.|...+ ...++.|.|.|.. ..-.|.|.|+|.||..+|+.+|+.+-..+-
T Consensus 855 i~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a~ 914 (1267)
T KOG1264|consen 855 ILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKAD 914 (1267)
T ss_pred cccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHhh
Confidence 3444455554333 3346678888754 235799999999999999999998866543
No 417
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=42.20 E-value=4.1e+02 Score=27.51 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhh
Q 003309 51 DIAFASALETFG 62 (832)
Q Consensus 51 ~~~f~~~l~~f~ 62 (832)
+..|+..|..+.
T Consensus 35 E~EYA~~L~~L~ 46 (237)
T cd07657 35 DREYASTLGSLA 46 (237)
T ss_pred HHHHHHHHHHHH
Confidence 345566665543
No 418
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=40.81 E-value=18 Score=26.37 Aligned_cols=24 Identities=38% Similarity=0.840 Sum_probs=17.6
Q ss_pred ccccCCCCCCCeeecccceeecccc
Q 003309 514 RCADCGAPEPDWASLNLGVLVCIEC 538 (832)
Q Consensus 514 ~c~dc~~~~p~w~s~n~g~~~c~~C 538 (832)
.|..||+.. .-..-.-|-++|..|
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~C 25 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNC 25 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCC
Confidence 588899865 233345788899999
No 419
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=40.68 E-value=3.6 Score=50.78 Aligned_cols=109 Identities=13% Similarity=0.175 Sum_probs=62.9
Q ss_pred eeEEEEEEecC---------CCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccC
Q 003309 293 TIRQGYLSKRS---------SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYH 363 (832)
Q Consensus 293 ~~k~G~L~K~~---------~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (832)
..|+||||-+. +.....|++-|.+|.++.++.|.......+-... .. . .
T Consensus 923 ~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aa-s~-----a----------------s 980 (1973)
T KOG4407|consen 923 SEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAA-SL-----A----------------S 980 (1973)
T ss_pred hhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhh-hh-----c----------------c
Confidence 36899997332 1123469999999997666666555443211000 00 0 0
Q ss_pred CCCCCccccccccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 364 GGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 364 ~~~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
+.. .... ..+-+..|-+...-.+..|+..|.+.+.. -.+.|||++-++|-.|++.++...
T Consensus 981 ~~~-st~t---ts~c~nscltdI~ysetkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~St 1041 (1973)
T KOG4407|consen 981 SSC-STAT---TSECLNSCLTDIQYSETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSST 1041 (1973)
T ss_pred ccc-cccc---CccccccchhhhhhhhhhhhhHHHhHHHHHHhHhhccCccccccchhhhhhhcc
Confidence 000 0000 11222333332212334567889999887 679999999999999999886554
No 420
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.51 E-value=6.4e+02 Score=29.22 Aligned_cols=78 Identities=10% Similarity=0.125 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHH
Q 003309 118 VKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDA 197 (832)
Q Consensus 118 ~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a 197 (832)
++-.|.+|-+.+..--..+.++..+-+.++.+.+++.+ ++.+.|+...+.+--+..++.++.++.+ .++..+-..|+.
T Consensus 568 ~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~-~~~eer~~i~e~a~~La~R~eea~e~qe-~L~~~~~~L~~~ 645 (741)
T KOG4460|consen 568 TQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLS-YCREERKSLREMAERLADRYEEAKEKQE-DLMNRMKKLLHS 645 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHhc
Confidence 44556666666666656666665443333333333322 2334444444444455566667766665 455555555543
No 421
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=40.42 E-value=28 Score=26.70 Aligned_cols=36 Identities=25% Similarity=0.609 Sum_probs=29.1
Q ss_pred CCccccCCCC-CCCeeecccce-eecccchhhhhccCC
Q 003309 512 NDRCADCGAP-EPDWASLNLGV-LVCIECSGVHRNLGV 547 (832)
Q Consensus 512 n~~c~dc~~~-~p~w~s~n~g~-~~c~~Csg~hr~lg~ 547 (832)
...|..|+.. .|.|-.-..|. ++|-.|---.+.-|.
T Consensus 3 ~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~ 40 (52)
T smart00401 3 GRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGG 40 (52)
T ss_pred CCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCC
Confidence 5689999986 58999888997 999999766665443
No 422
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=39.81 E-value=12 Score=26.02 Aligned_cols=27 Identities=30% Similarity=0.812 Sum_probs=16.6
Q ss_pred CccccCCCC-CCCeeecccceeecccch
Q 003309 513 DRCADCGAP-EPDWASLNLGVLVCIECS 539 (832)
Q Consensus 513 ~~c~dc~~~-~p~w~s~n~g~~~c~~Cs 539 (832)
..|.+||.+ .-+|-.-+|+..||..|-
T Consensus 4 ~~C~eC~~~f~dSyL~~~F~~~VCD~CR 31 (34)
T PF01286_consen 4 PKCDECGKPFMDSYLLNNFDLPVCDKCR 31 (34)
T ss_dssp EE-TTT--EES-SSCCCCTS-S--TTT-
T ss_pred chHhHhCCHHHHHHHHHhCCcccccccc
Confidence 479999997 457999999999999994
No 423
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=39.12 E-value=92 Score=27.27 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=22.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 6 LDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKY 40 (832)
Q Consensus 6 l~DSP~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~ 40 (832)
-.|+|.+|..|...-+++..+-+.+...++....+
T Consensus 25 ~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 25 PRDSQELREKIHQLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37999999999877777776655555555444443
No 424
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=38.25 E-value=4.4e+02 Score=26.66 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 186 EFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQA 235 (832)
Q Consensus 186 e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~~~~~~r~~~~~~~~ 235 (832)
+.=+.+..|-.+|-.+.+.|..++..+.|++.++.+++.+.....-...+
T Consensus 57 ~l~eeF~~~ae~hR~l~k~G~~ll~ai~~~~s~l~T~l~KaipDT~lTik 106 (215)
T cd07659 57 AASEAFTKFGEAHRSIEKFGIELLKTLKPMLSDLGTYLNKAIPDTKLTIK 106 (215)
T ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhhCchHHHHHH
Confidence 66678888999999999999999999999999999999887665544433
No 425
>PF01258 zf-dskA_traR: Prokaryotic dksA/traR C4-type zinc finger; InterPro: IPR000962 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents domains identified in zinc finger-containing members of the DksA/TraR family. DksA is a critical component of the rRNA transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. In delta-dksA mutants, rRNA promoters are unresponsive to changes in amino acid availability, growth rate, or growth phase. In vitro, DksA binds to RNAP, reduces open complex lifetime, inhibits rRNA promoter activity, and amplifies effects of ppGpp and the initiating NTP on rRNA transcription [, ]. The dksA gene product suppresses the temperature-sensitive growth and filamentation of a dnaK deletion mutant of Escherichia coli. Gene knockout [] and deletion [] experiments have shown the gene to be non-essential, mutations causing a mild sensitivity to UV light, but not affecting DNA recombination []. In Pseudomonas aeruginosa, dksA is a novel regulator involved in the post-transcriptional control of extracellular virulence factor production []. The proteins contain a C-terminal region thought to fold into a 4-cysteine zinc finger. Other proteins found to contain a similar zinc finger domain include: the traR gene products encoded on the E. coli F and R100 plasmids [, ] the traR gene products encoded on Salmonella spp. plasmids pED208 and pSLT the dnaK suppressor hypothetical proteins from bacteria and bacteriophage FHL4, LIM proteins from Homo sapiens (Human) and Mus musculus (Mouse) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2GVI_A 2KQ9_A 2KGO_A 1TJL_I.
Probab=35.93 E-value=5.5 Score=27.91 Aligned_cols=29 Identities=34% Similarity=0.802 Sum_probs=16.1
Q ss_pred ccccCCCCCCCe-eecccceeecccchhhh
Q 003309 514 RCADCGAPEPDW-ASLNLGVLVCIECSGVH 542 (832)
Q Consensus 514 ~c~dc~~~~p~w-~s~n~g~~~c~~Csg~h 542 (832)
.|.+||.+-|.= .-..=|..+|+.|++.|
T Consensus 5 ~C~~CGe~I~~~Rl~~~p~~~~C~~C~~~~ 34 (36)
T PF01258_consen 5 ICEDCGEPIPEERLVAVPGATLCVECQERR 34 (36)
T ss_dssp B-TTTSSBEEHHHHHHCTTECS-HHHHHHH
T ss_pred CccccCChHHHHHHHhCCCcEECHHHhCcc
Confidence 499999853310 11112678899998765
No 426
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=35.58 E-value=36 Score=40.58 Aligned_cols=36 Identities=28% Similarity=0.625 Sum_probs=28.7
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEec
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRK 328 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~ 328 (832)
..++|+|.||.+ .++.+.|.+.||||. +..|+|...
T Consensus 473 ~nsvk~GiLy~k-d~vdheWt~h~fvlt-~~kl~ys~e 508 (1267)
T KOG1264|consen 473 KNSVKQGILYMK-DPVDHEWTRHYFVLT-DAKLSYSDE 508 (1267)
T ss_pred hhhhhcceEEEe-cCCCCceeeeEEEEe-cceeEeehh
Confidence 345799999998 556788999999999 677777543
No 427
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=35.03 E-value=6e+02 Score=27.29 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 003309 128 ASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKK 183 (832)
Q Consensus 128 ~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~ 183 (832)
....|+..+.+.++.+.-......++--.+|..+-..|..++.+|...+.++..+-
T Consensus 137 ~~~~~~~~~~~~l~~P~lG~~Re~q~~~~~l~~a~~~~~~a~~ey~~~l~~~~~~a 192 (293)
T PF09712_consen 137 WKEQYRETLGRWLQMPALGPSREHQEQLQALFDAWMEYQRASQEYQAQLSEAWMKA 192 (293)
T ss_pred HHHHHHHHHHHHHcCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999998876665555566666788889999999999999988876543
No 428
>TIGR00613 reco DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair.
Probab=34.59 E-value=26 Score=36.30 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=27.9
Q ss_pred ccCCCCccccCCCCCC-Ceeecccceeecccchhh
Q 003309 508 RVCGNDRCADCGAPEP-DWASLNLGVLVCIECSGV 541 (832)
Q Consensus 508 ~~~~n~~c~dc~~~~p-~w~s~n~g~~~c~~Csg~ 541 (832)
-.|.-..|+.||..++ .+.|..-|-++|..|.+.
T Consensus 143 ~~p~l~~C~~cg~~~~~~~fs~~~gg~~C~~c~~~ 177 (241)
T TIGR00613 143 YALDLDKCAVCGSKEDLIYFSMTYGGALCRQCGEK 177 (241)
T ss_pred CCcccCccCCCCCcCCCceEchhcCeEEChhhCcc
Confidence 3467789999998654 688899999999999764
No 429
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=34.23 E-value=5.2e+02 Score=26.31 Aligned_cols=108 Identities=16% Similarity=0.147 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVE 100 (832)
Q Consensus 21 ~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~ 100 (832)
+.....+.+++++-...+.+.............++.++.+|+......... ... ...+..+..+......+.....
T Consensus 24 ~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~-E~~---~~l~~~l~~l~~~~~~~~~~~~ 99 (236)
T PF09325_consen 24 EWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKS-EEE---KSLSEALSQLAEAFEKISELLE 99 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCC---chhHHHHHHHHHHHHHHHHHHH
Confidence 345566667777776666666665666666678888888887754333322 222 2345556666665555443322
Q ss_pred ---HHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHH
Q 003309 101 ---HMLNDRLLQYVNIDLHEVKEARKCFDKASLLY 132 (832)
Q Consensus 101 ---~~~~~pL~~f~~~di~~~ke~rk~fek~~~~y 132 (832)
..-...|..-+++-++-+...|.-|......+
T Consensus 100 ~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~ 134 (236)
T PF09325_consen 100 EQANQEEETLGEPLREYLRYIESVKEALNRRDKKL 134 (236)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344446666666667777776654443
No 430
>PRK00085 recO DNA repair protein RecO; Reviewed
Probab=33.31 E-value=37 Score=35.37 Aligned_cols=34 Identities=38% Similarity=0.606 Sum_probs=27.8
Q ss_pred ccCCCCccccCCCCCC-Ceeecccceeecccchhh
Q 003309 508 RVCGNDRCADCGAPEP-DWASLNLGVLVCIECSGV 541 (832)
Q Consensus 508 ~~~~n~~c~dc~~~~p-~w~s~n~g~~~c~~Csg~ 541 (832)
-.|.-..|+-||.+.. .|.+..-|-++|..|...
T Consensus 145 ~~p~l~~C~~Cg~~~~~~~f~~~~gg~~c~~c~~~ 179 (247)
T PRK00085 145 YGLDLDHCAVCGAPGDHRYFSPKEGGAVCSECGDP 179 (247)
T ss_pred CccchhhHhcCCCCCCceEEecccCCcccccccCc
Confidence 3466679999999854 789999999999999733
No 431
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=33.29 E-value=1.1e+03 Score=30.06 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 186 EFLEAVSGTMDAHLRYFKQGYELL 209 (832)
Q Consensus 186 e~l~~l~~~~~a~~~ff~~g~~~~ 209 (832)
+.++....-+..+..--+++.+.+
T Consensus 1643 ~~a~~~a~sa~~~A~~a~q~~~~l 1666 (1758)
T KOG0994|consen 1643 KQAEKTAGSAKEQALSAEQGLEIL 1666 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555445555544
No 432
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=33.27 E-value=71 Score=31.48 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=40.7
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhh
Q 003309 776 PLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSD 829 (832)
Q Consensus 776 pLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~ 829 (832)
-|..|+..|-...+.-.|++|.+++. +.|..|+..+| ..|+.+++.
T Consensus 146 hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynh--RkIL~yfi~ 191 (192)
T PF03158_consen 146 HLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNH--RKILDYFIR 191 (192)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhH--HHHHHHhhc
Confidence 47789999999999999999998864 79999999999 889998874
No 433
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=33.24 E-value=9.7e+02 Score=29.16 Aligned_cols=210 Identities=10% Similarity=0.067 Sum_probs=103.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCC---cccc-CchHHHHHHHH
Q 003309 9 SPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPI---SVAF-GGPVMTKFTIA 84 (832)
Q Consensus 9 SP~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~---~~~~-~~~~l~~f~~~ 84 (832)
-|.+-..++.+...++.+..|+.+=......+.+++.+.=.+-..|..-++.+....++.. ++.. +...+..+.+.
T Consensus 24 i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm 103 (683)
T PF08580_consen 24 IPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEVYVSAIEDLQLREDIANSLFDLIEEVSQM 103 (683)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccccccccccccccHHHHHHHHHHH
Confidence 5778888888999999999999998888888877766554455677777777644333221 1111 01111222222
Q ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHhHhhhHHHHHHHH-HHHHH-hH-----HHHHHHHHHH--hcccCC
Q 003309 85 LREIGTYKEVLR---------SQVEHMLNDRLLQYVNIDLHEVKEARK-CFDKA-SL-----LYDQAREKFL--SLRKGT 146 (832)
Q Consensus 85 l~ei~~~~~~l~---------~~~~~~~~~pL~~f~~~di~~~ke~rk-~fek~-~~-----~yd~al~k~~--~~~k~k 146 (832)
.-++-.....+- ..+...++.-|..-+++-++.+-+... +|.-- +. +.++..++.- ...-.+
T Consensus 104 ~~~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~~~~~~~~~ 183 (683)
T PF08580_consen 104 ELDVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMPSSTNSSNK 183 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhccccCCCCcC
Confidence 211111111111 123345555566666665555543331 11111 11 2344444431 110011
Q ss_pred c---hhHH--hHH---HHHHHHHHHHHHHHHHHHH-HHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHH
Q 003309 147 K---TDVA--AIL---EEELHSARSAFEQARFSLV-TALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELL-HQMEPYI 216 (832)
Q Consensus 147 ~---~~~~--~e~---~~~l~~~r~~f~~~sld~~-~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~-~~l~~~~ 216 (832)
. |-.. .|. +.---.+|..=.+++|||+ -+|.+++.+-. .++..+++.+.....--.+.|+.| .+++..-
T Consensus 184 ~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~-~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK 262 (683)
T PF08580_consen 184 RFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRAE-SIFPSACEELEDRYERLEKKWKKLEKEAESLK 262 (683)
T ss_pred CcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111 111 1111256777788999997 57777777653 555666666555444443333333 3344333
Q ss_pred HHH
Q 003309 217 NQV 219 (832)
Q Consensus 217 ~~l 219 (832)
+++
T Consensus 263 ~EL 265 (683)
T PF08580_consen 263 KEL 265 (683)
T ss_pred HHh
Confidence 333
No 434
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=33.08 E-value=9.8e+02 Score=29.19 Aligned_cols=25 Identities=8% Similarity=0.294 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 19 LEESAEVLRERSLKFYKGCRKYTEG 43 (832)
Q Consensus 19 ~E~~i~~l~~~l~kl~k~~~~~~~~ 43 (832)
|++.|.+++--+-....+|..+-.+
T Consensus 790 fse~vnniKP~i~avt~ACEE~rkS 814 (1102)
T KOG1924|consen 790 FSEQVNNIKPDIVAVTAACEELRKS 814 (1102)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHhh
Confidence 7888888888888888888876653
No 435
>COG1381 RecO Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=32.81 E-value=21 Score=37.37 Aligned_cols=31 Identities=32% Similarity=0.694 Sum_probs=27.2
Q ss_pred cCCCCccccCCCCC-CCeeecccceeecccch
Q 003309 509 VCGNDRCADCGAPE-PDWASLNLGVLVCIECS 539 (832)
Q Consensus 509 ~~~n~~c~dc~~~~-p~w~s~n~g~~~c~~Cs 539 (832)
.|.=..|+.||.+. |...|.-.|-++|.+|+
T Consensus 151 ~~~l~~Ca~cg~~~~~~~~s~~~~~~~C~~~~ 182 (251)
T COG1381 151 GPNLTSCARCGTPVDPVYFSPKSGGFLCSKCA 182 (251)
T ss_pred ccchHHHhCcCCcCCCcceeeccCcccchhcc
Confidence 35667899999985 57999999999999998
No 436
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=32.26 E-value=23 Score=39.74 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=21.8
Q ss_pred ceeEEEEEEecCCCC-CCCCceeEEEEeC
Q 003309 292 QTIRQGYLSKRSSNL-RGDWKRRFFVLDS 319 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~-~~~WkrRwfvL~~ 319 (832)
..+|+|+++.+..++ .|.|.++|.+|..
T Consensus 7 ~~~k~g~~~~~~~r~~~k~~~~~~~~L~~ 35 (429)
T KOG4047|consen 7 CLVKDGVPDNHRNKFKVKNVRDDGAELGS 35 (429)
T ss_pred cccccCccchhhhhhccccccccceeeec
Confidence 356899998776543 4689999999984
No 437
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=32.18 E-value=6.4e+02 Score=26.75 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 11 MFRKQIQGLEESAEVLRERSLKFYKGCR 38 (832)
Q Consensus 11 ~FRa~i~~~E~~i~~l~~~l~kl~k~~~ 38 (832)
.||..|..++..++.-...=..+.+...
T Consensus 81 ~l~~~l~~~~~~L~~A~~sD~~~~~~~~ 108 (296)
T PF13949_consen 81 SLRKELQKYREYLEQASESDSQLRSKLE 108 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4666666666666555544444443333
No 438
>cd07171 NR_DBD_ER DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers. DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ER interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Estrogen receptor is a transcription regulator that mediates the biological effects of hormone estrogen. The binding of estrogen to the receptor triggers the dimerization and the binding of the receptor dimer to estrogen response element, which is a palindromic inverted repeat: 5'GGTCAnnnTGACC-3', of target genes. Through ER, estrogen regulates development, reproduction and homeostasis. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, ER has a central well-conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserv
Probab=31.35 E-value=27 Score=29.63 Aligned_cols=31 Identities=23% Similarity=0.553 Sum_probs=25.6
Q ss_pred CCCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 511 ~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
.|..|.-||.+. ....||+..|..|.++.|-
T Consensus 2 ~~~~C~VCg~~~---~g~hyGv~sC~aC~~FFRR 32 (82)
T cd07171 2 DTHFCAVCSDYA---SGYHYGVWSCEGCKAFFKR 32 (82)
T ss_pred CCCCCeecCCcC---cceEECceeehhhHHhHHH
Confidence 356799999754 3578999999999999984
No 439
>cd07160 NR_DBD_LXR DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. LXR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. LXR operates as cholesterol sensor which protects cells from cholesterol overload by stimulating reverse cholesterol transport from peripheral tissues to the liver and its excretion in the bile. Oxidized cholesterol derivatives or oxysterols were identified as specific ligands for LXRs. LXR functions as a heterodimer with the retinoid X receptor (RXR) which may be activated by either LXR agonist or 9-cis retinoic acid, a specific RXR ligand. The LXR/RXR complex binds to a liver X receptor response element (LXRE) in the promoter region of target genes. The ideal LXRE seq
Probab=31.03 E-value=28 Score=30.84 Aligned_cols=31 Identities=35% Similarity=0.860 Sum_probs=26.1
Q ss_pred CCCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 511 ~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
++..|.-||.+.- ..+||+..|..|.++.|-
T Consensus 17 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 47 (101)
T cd07160 17 GNEVCSVCGDKAS---GFHYNVLSCEGCKGFFRR 47 (101)
T ss_pred CCCCCeecCCcCc---ceEECcceehhhhhhhhh
Confidence 5678999998643 568999999999999984
No 440
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.46 E-value=6.3e+02 Score=26.12 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHH
Q 003309 115 LHEVKEARKCFDKASLLYDQAREKF 139 (832)
Q Consensus 115 i~~~ke~rk~fek~~~~yd~al~k~ 139 (832)
.+.+..+|+.|...-.+.|.+....
T Consensus 120 ~~~~~kaKk~y~~~cke~e~~~~~~ 144 (233)
T cd07649 120 YAAVEKARKALLERQKDLEGKTQQL 144 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888999998888888865543
No 441
>cd07173 NR_DBD_AR DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers. DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. To regulate gene expression, AR interacts with a palindrome of the core sequence 5'-TGTTCT-3' with a 3-bp spacer. It also binds to the direct repeat 5'-TGTTCT-3' hexamer in some androgen controlled genes. AR is activated by the androgenic hormones, testosterone or dihydrotestosterone, which are responsible for primary and for secondary male characteristics, respectively. The primary mechanism of action of ARs is by direct regulation of gene transcription. The binding of androgen results in a conformational change in the androgen receptor which causes its transport from the cytosol into the cell nucleus, and dimerization. The receptor dimer binds to a hormone response element of AR regulated genes and modul
Probab=30.23 E-value=27 Score=29.62 Aligned_cols=30 Identities=23% Similarity=0.606 Sum_probs=25.0
Q ss_pred CCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 512 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 512 n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
...|.-||.+.- ..+||+..|..|.++.|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (82)
T cd07173 3 QKTCLICGDEAS---GCHYGALTCGSCKVFFKR 32 (82)
T ss_pred CCCCeecCCcCc---ceEECcchhhhHHHHHHH
Confidence 456999997643 578999999999999984
No 442
>cd07170 NR_DBD_ERR DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers. DNA-binding domain of estrogen related receptors (ERRs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ERR interacts with the palindromic inverted repeat, 5'GGTCAnnnTGACC-3', upstream of the target gene and modulates the rate of transcriptional initiation. The estrogen receptor-related receptors (ERRs) are transcriptional regulators, which are closely related to the estrogen receptor (ER) family. Although ERRs lack the ability to bind to estrogen and are so-called orphan receptors, they share target genes, co-regulators and promoters with the estrogen receptor (ER) family. By targeting the same set of genes, ERRs seem to interfere with the classic ER-mediated estrogen response in various ways. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription
Probab=30.19 E-value=27 Score=30.73 Aligned_cols=29 Identities=24% Similarity=0.619 Sum_probs=24.3
Q ss_pred CccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 513 DRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 513 ~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
..|.-||.+.- ..+||+..|..|.++.|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (97)
T cd07170 5 RLCLVCGDIAS---GYHYGVASCEACKAFFKR 33 (97)
T ss_pred CCCeecCCcCc---ceEECceeehhhhHHHHH
Confidence 46999997653 468999999999999984
No 443
>cd06968 NR_DBD_ROR DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers. DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ROR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. RORS are key regulators of many physiological processes during embryonic development. RORs bind as monomers to specific ROR response elements (ROREs) consisting of the consensus core motif AGGTCA preceded by a 5-bp A/T-rich sequence. There are three subtypes of retinoid-related orphan receptors (RORs), alpha, beta, and gamma, which differ only in N-terminal sequence and are distributed in distinct tissues. RORalpha plays a key role in the development of the cerebellum particularly in the regulation of the maturation and survival of Purkinje cells. RORbe
Probab=29.88 E-value=28 Score=30.54 Aligned_cols=31 Identities=29% Similarity=0.715 Sum_probs=25.5
Q ss_pred CCCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 511 ~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
.+..|.-||.+. ...+||+..|..|.++.|-
T Consensus 4 ~~~~C~VCg~~~---~g~hyGv~sC~aC~~FFRR 34 (95)
T cd06968 4 EVIPCKICGDKS---SGIHYGVITCEGCKGFFRR 34 (95)
T ss_pred cccCCcccCCcC---cceEECceeehhhHHhhHH
Confidence 356799999865 3568999999999999984
No 444
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=29.40 E-value=7.7e+02 Score=26.81 Aligned_cols=66 Identities=11% Similarity=0.020 Sum_probs=38.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 003309 120 EARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRF 185 (832)
Q Consensus 120 e~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~ 185 (832)
..++-|++++.+.|.++.|....-..++.=+..-.++...+..+.-+..+-||..+...+..+.++
T Consensus 162 n~~~lfe~i~~kl~~ai~kv~p~~~~~PLlKkpl~~a~w~~iE~~~~~~~~ey~~Rr~ll~sRL~v 227 (465)
T KOG3973|consen 162 NEWKLFETIRQKLDGAIKKVSPSQRSHPLLKKPLDEATWPEIEKQCESFSREYYNRRLLLNSRLKV 227 (465)
T ss_pred hHHHHHHHHHHHHHhHHhcCCHhhcCCchhcCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999998853221111100000012233344444455566777777777776663
No 445
>PF15518 L_protein_N: L protein N-terminus; PDB: 2XI5_D 2XI7_D.
Probab=29.13 E-value=1.6e+02 Score=28.45 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHH
Q 003309 130 LLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMD 196 (832)
Q Consensus 130 ~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~ 196 (832)
..|++.+.|-.+ .+.++...+...+|.++|+.|... ++|..|+ ++.|.++-+.+.+++++-
T Consensus 4 ~~~~q~~~RI~~---~rda~vaKDI~~DLl~~RHnYFgr--elC~~l~-IEYRNDVp~~DIlLd~~P 64 (183)
T PF15518_consen 4 QKYNQFRARINA---ARDAEVAKDIDVDLLMARHNYFGR--ELCKALN-IEYRNDVPLDDILLDVLP 64 (183)
T ss_dssp HHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHHHHHH--HHHHHHT-----SS--HHHHHHHHST
T ss_pred HHHHHHHHHHHh---cCChHHhhhhhHHHHHHHhHHHHH--HHHHHhC-chhhcCCcHHHHHHHHcC
Confidence 456666666444 346788888889999999999766 4555544 489999888888776654
No 446
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=28.74 E-value=30 Score=26.98 Aligned_cols=27 Identities=41% Similarity=0.731 Sum_probs=18.3
Q ss_pred CccccCCCCCCCeeecc-cceeecccchhhhhcc
Q 003309 513 DRCADCGAPEPDWASLN-LGVLVCIECSGVHRNL 545 (832)
Q Consensus 513 ~~c~dc~~~~p~w~s~n-~g~~~c~~Csg~hr~l 545 (832)
-.|+|||+.+. |. --++-|-+| -||.|
T Consensus 21 YiCgdC~~en~----lk~~D~irCReC--G~RIl 48 (62)
T KOG3507|consen 21 YICGDCGQENT----LKRGDVIRCREC--GYRIL 48 (62)
T ss_pred EEecccccccc----ccCCCcEehhhc--chHHH
Confidence 57999999752 11 136779999 56654
No 447
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=28.72 E-value=8.8e+02 Score=27.31 Aligned_cols=122 Identities=13% Similarity=0.141 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCC----
Q 003309 77 VMTKFTIALREIGTYKEVLRSQVE------HMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT---- 146 (832)
Q Consensus 77 ~l~~f~~~l~ei~~~~~~l~~~~~------~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k---- 146 (832)
.+..++...+........+..|.+ ..-.+-|.+.++..+..+.+.++.|+++ +++.-+..+.-
T Consensus 108 ~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~-------l~~Le~~~~~~~~~~ 180 (447)
T KOG2751|consen 108 NTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKAC-------LQRLEQQNQDVSEED 180 (447)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcCcccchHH
Confidence 455666666665555555544322 2233444455555555555555555444 34433333331
Q ss_pred ---chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 003309 147 ---KTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGY 206 (832)
Q Consensus 147 ---~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~ 206 (832)
+.+.+.+.+..|....+.-...--|+-..+.+.+.++. ++.+....|+..+..|-.+-.
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~-~~~e~~~~~~~ey~~~~~q~~ 242 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAE-RLNEEEDQYWREYNNFQRQLI 242 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Confidence 11222334445555566666666666677777776654 777777777777666655543
No 448
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=27.91 E-value=8e+02 Score=26.97 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHhc------cc---CCchhHHhHHHHHHHHHHHHHHHHHHHH
Q 003309 115 LHEVKEARKCFDKASLLYDQAREKFLSL------RK---GTKTDVAAILEEELHSARSAFEQARFSL 172 (832)
Q Consensus 115 i~~~ke~rk~fek~~~~yd~al~k~~~~------~k---~k~~~~~~e~~~~l~~~r~~f~~~sld~ 172 (832)
|+++..+|+.|-.+...=-+|+.+-.+. +. +|=.++.+....++...|..|+++--++
T Consensus 141 l~evE~ak~~yh~ack~EksA~~re~n~kaDsSvspeq~kKlqdrveK~k~evqktkekYektl~el 207 (472)
T KOG2856|consen 141 LKEVEAAKKAYHAACKEEKSALTREQNAKADSSVSPEQLKKLQDRVEKCKQEVQKTKEKYEKTLAEL 207 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777888777776666666664322 21 1123344556667777888887765544
No 449
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=27.86 E-value=6.3e+02 Score=25.33 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccc
Q 003309 97 SQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRK 144 (832)
Q Consensus 97 ~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k 144 (832)
...+..+...-.++..+-|.+++..|+-|+ .|+....||..+++
T Consensus 36 ~~~e~~~~~KY~~lR~ElI~ELkqsKklyd----nYYkL~~KY~~LK~ 79 (196)
T PF15272_consen 36 ELQETSYKEKYQQLRQELINELKQSKKLYD----NYYKLYSKYQELKK 79 (196)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 345567777788888888999999999988 46777789999987
No 450
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=27.83 E-value=24 Score=39.25 Aligned_cols=32 Identities=31% Similarity=0.670 Sum_probs=27.1
Q ss_pred cCCCCccccCCCCCCCeeecccceeecccchhhhh
Q 003309 509 VCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHR 543 (832)
Q Consensus 509 ~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr 543 (832)
.++.+.||-||.. -++.-|||--|..|-|+-.
T Consensus 266 ~~~e~~CAVCgDn---AaCqHYGvRTCEGCKGFFK 297 (605)
T KOG4217|consen 266 LSAEGLCAVCGDN---AACQHYGVRTCEGCKGFFK 297 (605)
T ss_pred CCccceeeecCCh---HHhhhcCccccccchHHHH
Confidence 3467899999987 4688999999999999864
No 451
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=27.63 E-value=21 Score=24.79 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=14.8
Q ss_pred CccccCCCCCCCeee---cccceeecccchhhhh
Q 003309 513 DRCADCGAPEPDWAS---LNLGVLVCIECSGVHR 543 (832)
Q Consensus 513 ~~c~dc~~~~p~w~s---~n~g~~~c~~Csg~hr 543 (832)
++|..||.+- ++.. -+.--.+|..|.-||-
T Consensus 1 kfC~~CG~~l-~~~ip~gd~r~R~vC~~Cg~IhY 33 (34)
T PF14803_consen 1 KFCPQCGGPL-ERRIPEGDDRERLVCPACGFIHY 33 (34)
T ss_dssp -B-TTT--B--EEE--TT-SS-EEEETTTTEEE-
T ss_pred CccccccChh-hhhcCCCCCccceECCCCCCEEe
Confidence 4788899852 1211 2445678999988883
No 452
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=27.32 E-value=7.1e+02 Score=25.75 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCcc-ccCchHHHHHHHHHHHHHHHHHH
Q 003309 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISV-AFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 16 i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~-~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
+..|.+....-+.+-++|.|.++++....+... ..|..++..|....+..... ...+..|. .+..+.|..++..
T Consensus 25 ~~f~kERa~IE~~YAK~L~kLa~k~~k~~~~~~---Gtl~~aw~~~~~e~e~~a~~H~~la~~L~--~ev~~~l~~~~~~ 99 (239)
T cd07658 25 ATVLQERAELELNYAKGLSKLSGKLSKASKSVS---GTLSSAWTCVAEEMESEADIHRNLGSALT--EEAIKPLRQVLDE 99 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 344555666666677778877776643322211 34556665554432221100 00001111 1222333333333
Q ss_pred HHHH---HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 003309 95 LRSQ---VEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKF 139 (832)
Q Consensus 95 l~~~---~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~ 139 (832)
+... +.. -...+++-+..-.+....+|+.|.....+.|.+..++
T Consensus 100 ~~k~rK~~~~-~~~k~qk~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~ 146 (239)
T cd07658 100 QHKTRKPVEN-EVDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQV 146 (239)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 111 1222222233334455678999999888888888776
No 453
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=27.22 E-value=7.1e+02 Score=25.69 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 003309 157 ELHSARSAFEQARFSLVTALSNVE 180 (832)
Q Consensus 157 ~l~~~r~~f~~~sld~~~~l~~~~ 180 (832)
+...+|+..+..+|||=..-..++
T Consensus 134 ~i~k~RKkLe~rRLd~D~~k~r~~ 157 (229)
T cd07594 134 TISKERKLLENKRLDLDACKTRVK 157 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677778888888877666665
No 454
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.04 E-value=6.2e+02 Score=25.01 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch-------hHHH-HHHHHHHhh
Q 003309 12 FRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYD-------GDIA-FASALETFG 62 (832)
Q Consensus 12 FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~-------~~~~-f~~~l~~f~ 62 (832)
++..+..|++.+..+.+...+++|.-..+...+.+... .+.. +..+|..|+
T Consensus 9 i~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~ 67 (185)
T cd07628 9 IREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFS 67 (185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHH
Confidence 46778889999999988888888777665544333221 1223 556666665
No 455
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=26.77 E-value=1.8e+03 Score=30.18 Aligned_cols=113 Identities=16% Similarity=0.223 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhH--HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHH
Q 003309 114 DLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDV--AAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAV 191 (832)
Q Consensus 114 di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~--~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l 191 (832)
.+..-.+....+-+.+..|..+.+.+..+++...... +.+.....-+.+..+.+---.+.. .++-|+.-
T Consensus 1051 el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~---------~~~~L~~q 1121 (1822)
T KOG4674|consen 1051 ELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKK---------RIESLEKQ 1121 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 3444455666666666777777777777766532211 122333333444444333322222 23445555
Q ss_pred HHHHHHHHHHHHHHHH--HHhhhH---HHHHHHHHHHHHHHHHHHHHHH
Q 003309 192 SGTMDAHLRYFKQGYE--LLHQME---PYINQVLTYAQQSRERSNYEQA 235 (832)
Q Consensus 192 ~~~~~a~~~ff~~g~~--~~~~l~---~~~~~l~~~~~~~r~~~~~~~~ 235 (832)
....++|+.-...-.. ...... .-+.++..+++..++.++....
T Consensus 1122 NslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~ 1170 (1822)
T KOG4674|consen 1122 NSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLD 1170 (1822)
T ss_pred HHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHH
Confidence 5556666655543322 111112 2244455555555555544433
No 456
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms]
Probab=26.15 E-value=23 Score=32.45 Aligned_cols=31 Identities=29% Similarity=0.706 Sum_probs=20.3
Q ss_pred CccccCCCCCCC-eeecccceeecccchhhhh
Q 003309 513 DRCADCGAPEPD-WASLNLGVLVCIECSGVHR 543 (832)
Q Consensus 513 ~~c~dc~~~~p~-w~s~n~g~~~c~~Csg~hr 543 (832)
.+|.+||.+-|. =--..=+..+|++|...|-
T Consensus 81 G~Ce~cG~~Ip~~RL~A~P~A~~Ci~cQ~~~E 112 (120)
T COG1734 81 GICEECGEPIPEARLEARPTARLCIECQERAE 112 (120)
T ss_pred cchhccCCcCCHHHHhhCcchHHHHHHHHHHH
Confidence 589999996441 0011125789999988764
No 457
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=25.73 E-value=37 Score=25.39 Aligned_cols=25 Identities=24% Similarity=0.777 Sum_probs=19.1
Q ss_pred ccccCCCCCCCeeecccceeecccch
Q 003309 514 RCADCGAPEPDWASLNLGVLVCIECS 539 (832)
Q Consensus 514 ~c~dc~~~~p~w~s~n~g~~~c~~Cs 539 (832)
.|.=|+.+.++ .-.=+|.|+|.+|-
T Consensus 1 ~CiiC~~~~~~-GI~I~~~fIC~~CE 25 (46)
T PF10764_consen 1 KCIICGKEKEE-GIHIYGKFICSDCE 25 (46)
T ss_pred CeEeCCCcCCC-CEEEECeEehHHHH
Confidence 48889998887 33446899999993
No 458
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=25.38 E-value=1.5e+03 Score=28.84 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhchhhHHHHHHHHHHHHH
Q 003309 153 ILEEELHSARSAFEQARFSLVTALSNVE-AKKRFEFLEAVSGTMDAHL 199 (832)
Q Consensus 153 e~~~~l~~~r~~f~~~sld~~~~l~~~~-~~~~~e~l~~l~~~~~a~~ 199 (832)
++-..+...|+.|...--.|-..-+.++ .+.+.+.++..+.-++++.
T Consensus 341 ~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 341 EARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555444444433333333 2445567777777777766
No 459
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=25.04 E-value=1.6e+02 Score=25.83 Aligned_cols=40 Identities=35% Similarity=0.488 Sum_probs=35.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003309 7 DDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGE 46 (832)
Q Consensus 7 ~DSP~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~ 46 (832)
+|+-..|..+.+.|++.+.++..|.+|-+.-+.++..+++
T Consensus 1 E~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~k 40 (96)
T PF11365_consen 1 EDSAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNK 40 (96)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667789999999999999999999999988888887555
No 460
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=24.72 E-value=1.3e+03 Score=28.10 Aligned_cols=33 Identities=12% Similarity=0.312 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 9 SPMFRKQIQGLEESAEVLRERSLKFYKGCRKYT 41 (832)
Q Consensus 9 SP~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~ 41 (832)
.-.+|.-++.+|+++...+..|..|.-.|...-
T Consensus 87 triyRrdv~llEddlk~~~sQiriLQn~c~~lE 119 (1265)
T KOG0976|consen 87 TRIYRRDVNLLEDDLKHHESQIRILQNKCLRLE 119 (1265)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999888888887777543
No 461
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.61 E-value=1.2e+03 Score=27.54 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 8 DSPMFRKQIQGLEESAEVLRERSLKFY 34 (832)
Q Consensus 8 DSP~FRa~i~~~E~~i~~l~~~l~kl~ 34 (832)
.+-.|=.++..+|++++.++..+.++.
T Consensus 155 ~~~~~G~a~~~Le~~L~~ie~~F~~f~ 181 (560)
T PF06160_consen 155 HSFSYGPAIEELEKQLENIEEEFSEFE 181 (560)
T ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777666666
No 462
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.58 E-value=1.2e+03 Score=27.39 Aligned_cols=16 Identities=6% Similarity=-0.049 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 003309 27 RERSLKFYKGCRKYTE 42 (832)
Q Consensus 27 ~~~l~kl~k~~~~~~~ 42 (832)
=.||-.+++.-..+++
T Consensus 164 lhWlvdlI~~~t~~v~ 179 (581)
T KOG0995|consen 164 LHWLVDLIRINTALVE 179 (581)
T ss_pred HHHHHHHHHHhHHHhh
Confidence 3577777766666665
No 463
>cd07163 NR_DBD_TLX DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers. DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. TLX interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. TLX is an orphan receptor that is expressed by neural stem/progenitor cells in the adult brain of the subventricular zone (SVZ) and the dentate gyrus (DG). It plays a key role in neural development by promoting cell cycle progression and preventing apoptosis in the developing brain. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, TLX has a central well conserved DNA-binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=23.94 E-value=33 Score=29.87 Aligned_cols=30 Identities=27% Similarity=0.697 Sum_probs=25.1
Q ss_pred CCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 512 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 512 n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
+..|.-||.+.- ..+||+..|..|.++.|-
T Consensus 6 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (92)
T cd07163 6 DIPCKVCGDRSS---GKHYGIYACDGCSGFFKR 35 (92)
T ss_pred CCCCcccCCcCc---ccEECceeeeeeeeEEee
Confidence 567999997643 468999999999999984
No 464
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=23.91 E-value=6.6e+02 Score=24.18 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 78 MTKFTIALREIGTYKEVLRSQVEHMLNDR 106 (832)
Q Consensus 78 l~~f~~~l~ei~~~~~~l~~~~~~~~~~p 106 (832)
|..+++.+.+...+...|. .+...+..|
T Consensus 61 L~~~ae~I~~~L~yF~~Ld-~itr~Ln~p 88 (157)
T PF04136_consen 61 LEELAEEISEKLQYFEELD-PITRRLNSP 88 (157)
T ss_pred HHHHHHHHHHHhHHHhhHH-HHHHHHcCC
Confidence 5556666666555555544 333444444
No 465
>cd06966 NR_DBD_CAR DNA-binding domain of constitutive androstane receptor (CAR) is composed of two C4-type zinc fingers. DNA-binding domain (DBD) of constitutive androstane receptor (CAR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. CAR DBD interacts with CAR response element, a perfect repeat of two AGTTCA motifs with a 4 bp spacer upstream of the target gene, and modulates the rate of transcriptional initiation. The constitutive androstane receptor (CAR) is a ligand-regulated transcription factor that responds to a diverse array of chemically distinct ligands, including many endogenous compounds and clinical drugs. It functions as a heterodimer with RXR. The CAR/RXR heterodimer binds many common response elements in the promoter regions of a diverse set of target genes involved in the metabolism, transport, and ultimately, elimination of these molecules from the body. CAR is a closest mammalian
Probab=23.83 E-value=37 Score=29.67 Aligned_cols=28 Identities=25% Similarity=0.681 Sum_probs=23.2
Q ss_pred ccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 514 RCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 514 ~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
.|.-||.+.- ..+||+..|..|.++.|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aC~~FFRR 29 (94)
T cd06966 2 ICGVCGDKAL---GYNFNAITCESCKAFFRR 29 (94)
T ss_pred CCeeCCCcCc---ceEECcceeeeehheehh
Confidence 5888997543 558999999999999984
No 466
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=23.76 E-value=31 Score=32.10 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=24.9
Q ss_pred CCCCccccCCCCCCCeeecccceeecc-cchhhhh
Q 003309 510 CGNDRCADCGAPEPDWASLNLGVLVCI-ECSGVHR 543 (832)
Q Consensus 510 ~~n~~c~dc~~~~p~w~s~n~g~~~c~-~Csg~hr 543 (832)
|--..|+-||-. .-++++|.|.-.|. .|-++|-
T Consensus 116 P~r~fCaVCG~~-S~ysC~~CG~kyCsv~C~~~Hn 149 (156)
T KOG3362|consen 116 PLRKFCAVCGYD-SKYSCVNCGTKYCSVRCLKTHN 149 (156)
T ss_pred CcchhhhhcCCC-chhHHHhcCCceeechhhhhcc
Confidence 445799999944 45888999988874 6877774
No 467
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=23.72 E-value=8e+02 Score=25.13 Aligned_cols=30 Identities=17% Similarity=-0.065 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 003309 19 LEESAEVLRERSLKFYKGCRKYTEGLGEGY 48 (832)
Q Consensus 19 ~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~ 48 (832)
++.+...|+..++.+.+.+.+++..+....
T Consensus 15 ld~df~~l~~~~D~tk~~~~~i~~~t~~~L 44 (220)
T cd07617 15 LDAHFENLLARADSTKNWTEKILRQTEVLL 44 (220)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888889988888888777644443
No 468
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=23.59 E-value=35 Score=24.23 Aligned_cols=13 Identities=38% Similarity=0.940 Sum_probs=10.7
Q ss_pred eecccchhhhhcc
Q 003309 533 LVCIECSGVHRNL 545 (832)
Q Consensus 533 ~~c~~Csg~hr~l 545 (832)
+-|+.||.+|-.-
T Consensus 2 yYCi~Cs~~h~e~ 14 (41)
T PF13119_consen 2 YYCINCSEIHHEK 14 (41)
T ss_pred EEEEEhHHhHHhh
Confidence 5799999999753
No 469
>KOG4846 consensus Nuclear receptor [Signal transduction mechanisms]
Probab=23.42 E-value=42 Score=36.79 Aligned_cols=31 Identities=29% Similarity=0.684 Sum_probs=26.5
Q ss_pred CCCCccccCCCCCCCeeecccceeecccchhhhh
Q 003309 510 CGNDRCADCGAPEPDWASLNLGVLVCIECSGVHR 543 (832)
Q Consensus 510 ~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr 543 (832)
.+-..|--||.+...+ -|||+.|..|-|+-|
T Consensus 130 ~~~~lCkVCgDkASGf---HYGV~aCEGCKGFFR 160 (538)
T KOG4846|consen 130 KAISLCKVCGDKASGF---HYGVTACEGCKGFFR 160 (538)
T ss_pred ceeEeehhhccccccc---eeceeecccchHHHH
Confidence 3556799999987766 599999999999987
No 470
>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]
Probab=23.41 E-value=44 Score=28.58 Aligned_cols=35 Identities=26% Similarity=0.556 Sum_probs=24.7
Q ss_pred HHHccCCCCccccCCCCC---C--------------Ceeecccceeecccch
Q 003309 505 VLRRVCGNDRCADCGAPE---P--------------DWASLNLGVLVCIECS 539 (832)
Q Consensus 505 ~~~~~~~n~~c~dc~~~~---p--------------~w~s~n~g~~~c~~Cs 539 (832)
..++.|+-..|++||.+- | .-.+-.||-.+|..|.
T Consensus 27 ~~kK~~~~p~C~~cg~pL~Gi~r~RP~e~~r~skt~krp~RpYGG~lc~~c~ 78 (93)
T COG2174 27 YEKKKPTIPKCAICGRPLGGIPRGRPREFRRLSKTKKRPERPYGGYLCANCV 78 (93)
T ss_pred eeeccCCCCcccccCCccCCccCCCcHHHHhccccccCcCCCcCceecHHHH
Confidence 346788999999999741 1 1124458889999884
No 471
>cd07172 NR_DBD_GR_PR DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers. DNA-binding domains of glucocorticoid receptor (GR) and progesterone receptor (PR) are composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinate a single zinc atom. The DBD from both receptors interact with the same hormone response element (HRE), which is an imperfect palindrome GGTACAnnnTGTTCT, upstream of target genes and modulates the rate of transcriptional initiation. GR is a transcriptional regulator that mediates the biological effects of glucocorticoids and PR regulates genes controlled by progesterone. GR is expressed in almost every cell in the body and regulates genes controlling a wide variety of processes including the development, metabolism, and immune response of the organism. PR functions in a variety of biological processes including development of the mammary gland, regulating cell cycle progression, p
Probab=22.88 E-value=46 Score=27.96 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=23.9
Q ss_pred CccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 513 DRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 513 ~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
..|.-||.+. ...+||+..|..|.++.|-
T Consensus 3 ~~C~VCg~~a---~g~hyGv~sC~aC~~FFRR 31 (78)
T cd07172 3 KICLVCSDEA---SGCHYGVLTCGSCKVFFKR 31 (78)
T ss_pred CCCeecCCcC---cceEECceeehhhHHhHHH
Confidence 4589999754 3569999999999999984
No 472
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.78 E-value=1.6e+03 Score=28.28 Aligned_cols=128 Identities=19% Similarity=0.132 Sum_probs=66.5
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC---CCCCCccccCchHHHHH
Q 003309 5 KLDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG---HNDPISVAFGGPVMTKF 81 (832)
Q Consensus 5 ~l~DSP~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~---~~~~~~~~~~~~~l~~f 81 (832)
.+++--.||..+..+.+.++..+.-+..+.....++...+.++.....+|......+... ...... ....+|..-
T Consensus 669 ~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~--~v~~s~~~k 746 (1200)
T KOG0964|consen 669 LLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKS--RVQESLEPK 746 (1200)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHhhHH
Confidence 455666788888888888888888777776666666665555554444555444443321 111110 111345555
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHhHhhhHHHHHHHHHHHHHhHHHHH
Q 003309 82 TIALREIGTYKEVLRSQVEH---MLNDRL-LQYVNIDLHEVKEARKCFDKASLLYDQ 134 (832)
Q Consensus 82 ~~~l~ei~~~~~~l~~~~~~---~~~~pL-~~f~~~di~~~ke~rk~fek~~~~yd~ 134 (832)
+..+.++...+..+..+.+. -+..-+ .++-.++...++...+..++.+.++.+
T Consensus 747 ~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~ 803 (1200)
T KOG0964|consen 747 GKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRA 803 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555555555443322 222222 233334444555555555555555543
No 473
>cd07161 NR_DBD_EcR DNA-binding domain of Ecdysone receptor (ECR) family is composed of two C4-type zinc fingers. DNA-binding domain of Ecdysone receptor (EcR) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. EcR interacts with highly degenerate pseudo-palindromic response elements, resembling inverted repeats of 5'-AGGTCA-3' separated by 1 bp, upstream of the target gene and modulates the rate of transcriptional initiation. EcR is present only in invertebrates and regulates the expression of a large number of genes during development and reproduction. EcR functions as a heterodimer by partnering with ultraspiracle protein (USP), the ortholog of the vertebrate retinoid X receptor (RXR). The natural ligands of EcR are ecdysteroids, the endogenous steroidal hormones found in invertebrates. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, EcRs h
Probab=22.74 E-value=47 Score=28.81 Aligned_cols=28 Identities=29% Similarity=0.712 Sum_probs=23.4
Q ss_pred ccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 514 RCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 514 ~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
.|.-||.+.- ..+||+..|..|.++.|-
T Consensus 3 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 30 (91)
T cd07161 3 LCLVCGDRAS---GYHYNALTCEGCKGFFRR 30 (91)
T ss_pred CCeeCCCcCc---ceEECceeehhhHHHHHH
Confidence 4889997644 468999999999999984
No 474
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=22.65 E-value=2.2e+03 Score=29.76 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHH
Q 003309 159 HSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYF 202 (832)
Q Consensus 159 ~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff 202 (832)
..+|.....+.-|+...+..++...+ +.......-........
T Consensus 1117 r~~r~K~ek~r~dL~~ele~l~~~Le-e~~~~t~~q~e~~~k~e 1159 (1930)
T KOG0161|consen 1117 RASRAKAERQRRDLSEELEELKEELE-EQGGTTAAQLELNKKRE 1159 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Confidence 45556666666777777777766554 44444444444333333
No 475
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=22.38 E-value=7.1e+02 Score=26.26 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=21.2
Q ss_pred HHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 003309 109 QYVNIDLHEVKEARKCFDKASLLYDQAREKFLS 141 (832)
Q Consensus 109 ~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~ 141 (832)
..+.......++.|.++++....-...+.+|+.
T Consensus 190 ~~L~~Q~edAk~LKe~~drRe~~v~~iL~~~L~ 222 (264)
T PF08687_consen 190 RLLQRQLEDAKELKENLDRRERVVSEILARYLS 222 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC
Confidence 345555667777777777777766666666654
No 476
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=22.31 E-value=35 Score=23.36 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=13.4
Q ss_pred ccccCCCCCCCeeecccceeecccc
Q 003309 514 RCADCGAPEPDWASLNLGVLVCIEC 538 (832)
Q Consensus 514 ~c~dc~~~~p~w~s~n~g~~~c~~C 538 (832)
.|++||+... --....+-|.+|
T Consensus 2 ~C~~Cg~~~~---~~~~~~irC~~C 23 (32)
T PF03604_consen 2 ICGECGAEVE---LKPGDPIRCPEC 23 (32)
T ss_dssp BESSSSSSE----BSTSSTSSBSSS
T ss_pred CCCcCCCeeE---cCCCCcEECCcC
Confidence 5889998644 112334678888
No 477
>cd07162 NR_DBD_PXR DNA-binding domain of pregnane X receptor (PXRs) is composed of two C4-type zinc fingers. DNA-binding domain (DBD)of pregnane X receptor (PXR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. PXR DBD interacts with the PXR response element, a perfect repeat of two AGTTCA motifs with a 4 bp spacer upstream of the target gene, and modulates the rate of transcriptional initiation. The pregnane X receptor (PXR) is a ligand-regulated transcription factor that responds to a diverse array of chemically distinct ligands, including many endogenous compounds and clinical drugs. PXR functions as a heterodimer with retinoic X receptor-alpha (RXRa) and binds to a variety of promoter regions of a diverse set of target genes involved in the metabolism, transport, and ultimately, elimination of these molecules from the body. Like other nuclear receptors, PXR has a central well conserved DNA-binding
Probab=22.17 E-value=49 Score=28.45 Aligned_cols=28 Identities=25% Similarity=0.723 Sum_probs=22.8
Q ss_pred ccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 514 RCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 514 ~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
.|.-||.+.- ..+||+..|..|.++.|-
T Consensus 1 ~C~VCg~~~~---g~hygv~sC~aC~~FFRR 28 (87)
T cd07162 1 ICRVCGDRAT---GYHFNAMTCEGCKGFFRR 28 (87)
T ss_pred CCcccCCcCc---ceEECcceehhhHHHHHh
Confidence 3778887654 458999999999999984
No 478
>cd07157 2DBD_NR_DBD1 The first DNA-binding domain (DBD) of the 2DBD nuclear receptors is composed of two C4-type zinc fingers. The first DNA-binding domain (DBD) of the 2DBD nuclear receptors(NRs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. NRs interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. Theses proteins contain two DBDs in tandem, probably resulted from an ancient recombination event. The 2DBD-NRs are found only in flatworm species, mollusks and arthropods. Their biological function is unknown.
Probab=21.65 E-value=39 Score=29.01 Aligned_cols=28 Identities=32% Similarity=0.786 Sum_probs=23.3
Q ss_pred ccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 514 RCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 514 ~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
.|.-||.+. ...+||+..|..|.++.|-
T Consensus 2 ~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 29 (86)
T cd07157 2 TCQVCGEPA---AGFHHGAYVCEACKKFFMR 29 (86)
T ss_pred CCcccCCcC---cccEECcceeeEeeeEEec
Confidence 488899764 3569999999999999984
No 479
>smart00030 CLb CLUSTERIN Beta chain.
Probab=21.57 E-value=4.2e+02 Score=26.46 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=43.2
Q ss_pred HHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchh--HHhHHHHHHHHHHHHHHHHHHHHHH
Q 003309 109 QYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTD--VAAILEEELHSARSAFEQARFSLVT 174 (832)
Q Consensus 109 ~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~--~~~e~~~~l~~~r~~f~~~sld~~~ 174 (832)
+=|++.|..||+.|---|+..++.-..+...-..+|+|+.. .++|.+..|.+....-..+++++..
T Consensus 22 ~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vCnetm~alWe 89 (206)
T smart00030 22 KEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNETMMALWE 89 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556677788888888888887776666655555554322 1256777787777766666666654
No 480
>cd07169 NR_DBD_GCNF_like DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers. DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. This domain interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. GCNF is a transcription factor expressed in post-meiotic stages of developing male germ cells. In vitro, GCNF has the ability to bind to direct repeat elements of 5'-AGGTCA.AGGTCA-3', as well as to an extended half-site sequence 5'-TCA.AGGTCA-3'. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, GCNF has a central well conserved DNA-binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=21.22 E-value=49 Score=28.63 Aligned_cols=31 Identities=26% Similarity=0.749 Sum_probs=25.3
Q ss_pred CCCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 511 ~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
.+..|.-||.+. ...+||+..|..|.++.|-
T Consensus 5 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 35 (90)
T cd07169 5 EQRTCLICGDRA---TGLHYGIISCEGCKGFFKR 35 (90)
T ss_pred cCCCCeecCCcC---cceEECcceehhhHHHHHH
Confidence 345699999764 4568999999999999984
No 481
>cd06955 NR_DBD_VDR DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers. DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. VDR interacts with a VDR response element, a direct repeat of GGTTCA DNA site with 3 bp spacer upstream of the target gene, and modulates the rate of transcriptional initiation. VDR is a member of the nuclear receptor (NR) superfamily that functions as classical endocrine receptors. VDR controls a wide range of biological activities including calcium metabolism, cell proliferation and differentiation, and immunomodulation. VDR is a high-affinity receptor for the biologically most active Vitamin D metabolite, 1alpha,25-dihydroxyvitamin D3 (1alpha,25(OH)2D3). The binding of the ligand to the receptor induces a conformational change of the ligand binding domain (LBD) with consequent dissociation of core
Probab=21.14 E-value=44 Score=30.01 Aligned_cols=29 Identities=24% Similarity=0.730 Sum_probs=24.4
Q ss_pred CccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 513 DRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 513 ~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
..|.-||.+.- ..+||+..|..|.++.|-
T Consensus 7 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (107)
T cd06955 7 RICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (107)
T ss_pred CCCeecCCcCc---ccEECcceeeeecceecc
Confidence 56999997644 568999999999999984
No 482
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.07 E-value=27 Score=39.84 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=32.1
Q ss_pred ccccccccccccCCcccCCc---ceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHH
Q 003309 375 HTVNLLTSTIKVDADQSDLR---FCFRIISPT-KNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 375 ~~i~l~~~~v~~~~~~~~r~---~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
+.|+++.|.+.+......-. ||.....+. --++|.|++|.....||.|-+-|
T Consensus 402 ~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WMAaCrLA 457 (664)
T KOG3727|consen 402 ISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWMAACRLA 457 (664)
T ss_pred CchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHHHHhhHh
Confidence 44666666654433322223 333323333 46899999999999999876544
No 483
>cd07156 NR_DBD_VDR_like The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers. The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. This domain interacts with specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. This family includes three types of nuclear receptors: vitamin D receptors (VDR), constitutive androstane receptor (CAR) and pregnane X receptor (PXR). VDR regulates calcium metabolism, cellular proliferation and differentiation. PXR and CAR function as sensors of toxic byproducts of cell metabolism and of exogenous chemicals, to facilitate their elimination. The DNA binding activity is regulated by their corresponding ligands. VDR is activated by Vitamin D; CAR and PXR respond to a diverse array of chemi
Probab=20.87 E-value=50 Score=27.19 Aligned_cols=27 Identities=26% Similarity=0.792 Sum_probs=21.6
Q ss_pred cccCCCCCCCeeecccceeecccchhhhhc
Q 003309 515 CADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 515 c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
|.-||.+.- ..+||+..|..|.++.|-
T Consensus 1 C~VC~~~~~---g~hygv~sC~aC~~FFRR 27 (72)
T cd07156 1 CGVCGDRAT---GYHFNAMTCEGCKGFFRR 27 (72)
T ss_pred CCccCccCc---ccEECcceehhhhhhhch
Confidence 566776544 358999999999999884
No 484
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=20.78 E-value=1.1e+03 Score=25.63 Aligned_cols=228 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcccchhH-HHHHHHHHHhhCCCCCC--CccccCchHHHHHHH
Q 003309 10 PMFRKQIQGLEESAEV---LRERSLKFYKGCRKYTEGLGEGYDGD-IAFASALETFGGGHNDP--ISVAFGGPVMTKFTI 83 (832)
Q Consensus 10 P~FRa~i~~~E~~i~~---l~~~l~kl~k~~~~~~~~~~~~~~~~-~~f~~~l~~f~~~~~~~--~~~~~~~~~l~~f~~ 83 (832)
|.|..... ...+.. ++.|++.+. ..+.........+ ..|.+.+..|-..--+. ...+-.++.......
T Consensus 71 ~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 144 (320)
T TIGR01834 71 PQFANGFA--PGAVQGYLQLQTWIEQYE----ATTQALQGDMDGQGQCYIKELMRFWQLPLSGWQSSVSPLGPLPTGDLH 144 (320)
T ss_pred HHHHhhcc--cccccchhhHHHHHHHHH----HHHHHHHhcccchhhhHHHHHHHHHcCCcchhhhhcccccccchhhHH
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHH--
Q 003309 84 ALREIGTY--KEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELH-- 159 (832)
Q Consensus 84 ~l~ei~~~--~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~-- 159 (832)
++.++... +..+..+...-+..|.--.-.+.-..+...=+.+.+++..+-.....+..+--+.-.....+.+....
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~L~~P~lG~~Re~q~~~~~l~~a~~~yq~a~~ey~~~~~~~~~ks~e~~~~~l~~~~~~g 224 (320)
T TIGR01834 145 AWLDLNNLYGDQLYRKNLSSFLSMPALGYSREMQSQLQRLFRDWMEYQQAMADYQLLEADIGYKSFAALMSDLLARAKSG 224 (320)
T ss_pred hHhhhccccHHHHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHH
Q 003309 160 ---SARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQM--------EPYINQVLTYAQQSRE 228 (832)
Q Consensus 160 ---~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l--------~~~~~~l~~~~~~~r~ 228 (832)
.+-+.|...=++-+...-.--.... +|....-.++.++..|=.+.-++++.. +.-++++...+..++.
T Consensus 225 ~~v~s~re~~d~W~~~ae~~~~e~~~S~-efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR 303 (320)
T TIGR01834 225 KPVKTAKALYDLWVIAAEEAYAEVFASE-ENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRR 303 (320)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 003309 229 RSNYEQAALNERMQEYKRQI 248 (832)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~ 248 (832)
+. +.|++.+.++....
T Consensus 304 ~v----r~L~k~l~~l~~~~ 319 (320)
T TIGR01834 304 EV----KSLKKRLGDLEANP 319 (320)
T ss_pred HH----HHHHHHHHHhhhcC
No 485
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=20.78 E-value=4e+02 Score=22.25 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC
Q 003309 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG 63 (832)
Q Consensus 21 ~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~ 63 (832)
.-++.|..+++.=++.|+.+..-+.+-...+..|+..|..+..
T Consensus 9 ~g~~~L~~~~~~~~~~~~~~~~f~~~Ra~iE~eYak~L~kL~~ 51 (87)
T smart00055 9 DGFEALLSRLKNGLRLLEDLKKFIRERAKIEEEYAKKLQKLSK 51 (87)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556655666666665555555556788888887765
No 486
>cd07165 NR_DBD_DmE78_like DNA-binding domain of Drosophila ecdysone-induced protein 78 (E78) like is composed of two C4-type zinc fingers. DNA-binding domain of proteins similar to Drosophila ecdysone-induced protein 78 (E78) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. E78 interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Drosophila ecdysone-induced protein 78 (E78) is a transcription factor belonging to the nuclear receptor superfamily. E78 is a product of the ecdysone-inducible gene found in an early late puff locus at position 78C during the onset of Drosophila metamorphosis. An E78 orthologue from the Platyhelminth Schistosoma mansoni (SmE78) has also been identified. It is the first E78 orthologue known outside of the molting animals--the Ecdysozoa. The SmE78 may be involved in transduction of an ecdysone signal in S. mansoni,
Probab=20.44 E-value=46 Score=28.17 Aligned_cols=27 Identities=33% Similarity=0.818 Sum_probs=21.9
Q ss_pred cccCCCCCCCeeecccceeecccchhhhhc
Q 003309 515 CADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 515 c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
|.-||.+.- ..+||+..|..|.++.|-
T Consensus 1 C~VCg~~~~---g~hyG~~sC~aC~~FFRR 27 (81)
T cd07165 1 CKVCGDKAS---GYHYGVTSCEGCKGFFRR 27 (81)
T ss_pred CCccCccCc---ceEECchhhhhHHHHHHh
Confidence 566887543 468999999999999995
No 487
>PRK11637 AmiB activator; Provisional
Probab=20.36 E-value=1.3e+03 Score=26.18 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 003309 155 EEELHSARSAF 165 (832)
Q Consensus 155 ~~~l~~~r~~f 165 (832)
+.++...+..+
T Consensus 116 q~~l~~~~~~l 126 (428)
T PRK11637 116 EQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 488
>cd06963 NR_DBD_GR_like The DNA binding domain of GR_like nuclear receptors is composed of two C4-type zinc fingers. The DNA binding domain of GR_like nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. This family of NRs includes four types of nuclear hormone receptors: glucocorticoid receptor (GR), mineralocorticoid receptor (MR), progesterone receptor (PR), and androgen receptor (AR). The receptors bind to common DNA elements containing a partial palindrome of the core sequence 5'-TGTTCT-3' with a 3bp spacer. These four receptors regulate some of the most fundamental physiological functions such as the stress response, metabolism, electrolyte homeostasis, immune function, growth, development, and reproduction. The NRs in this family have high sequence homology and sha
Probab=20.17 E-value=54 Score=27.12 Aligned_cols=27 Identities=30% Similarity=0.710 Sum_probs=21.6
Q ss_pred cccCCCCCCCeeecccceeecccchhhhhc
Q 003309 515 CADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 515 c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
|.-||.+. ...+||+..|..|.++.|-
T Consensus 1 C~VCg~~a---~~~hygv~sC~aCk~FFRR 27 (73)
T cd06963 1 CLICGDEA---SGCHYGVLTCGSCKVFFKR 27 (73)
T ss_pred CcccCccC---cceEECceeehhhhHhHHH
Confidence 56677654 3568999999999999984
No 489
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=20.05 E-value=1.1e+03 Score=25.48 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=23.7
Q ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 003309 102 MLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSL 142 (832)
Q Consensus 102 ~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~ 142 (832)
.....|+++.--+-|-|.|. |.-|+.+..||........+
T Consensus 82 shssTLdkLyaWEKKLY~EV-Ka~E~~r~~yeKK~~~Lr~~ 121 (312)
T PF04782_consen 82 SHSSTLDKLYAWEKKLYDEV-KAEEKLRIEYEKKCKQLRKQ 121 (312)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHH
Confidence 34445556655554444444 46788888888655555444
Done!