Query 003309
Match_columns 832
No_of_seqs 730 out of 5147
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 20:48:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q13_A DCC-interacting protein 100.0 3E-57 1E-61 505.2 41.1 360 4-434 11-381 (385)
2 4h8s_A DCC-interacting protein 100.0 1.1E-56 3.7E-61 504.4 40.0 365 3-434 33-404 (407)
3 3jue_A Arfgap with coiled-coil 100.0 1.7E-53 5.6E-58 470.4 23.8 289 494-831 27-324 (368)
4 1dcq_A PYK2-associated protein 100.0 5.1E-51 1.8E-55 435.4 21.5 256 499-832 4-262 (278)
5 2b0o_E UPLC1; arfgap, structur 100.0 3.2E-50 1.1E-54 434.1 21.5 251 499-831 29-282 (301)
6 3lvq_E ARF-GAP with SH3 domain 100.0 1.4E-50 4.9E-55 468.1 19.4 252 499-832 10-264 (497)
7 2q12_A DIP13 alpha, DCC-intera 100.0 9.2E-40 3.1E-44 345.0 31.0 239 4-246 11-256 (265)
8 2iqj_A Stromal membrane-associ 100.0 6.8E-37 2.3E-41 280.1 7.9 120 496-642 11-130 (134)
9 2crr_A Stromal membrane-associ 100.0 1.6E-36 5.4E-41 280.2 7.9 119 497-642 14-132 (141)
10 2olm_A Nucleoporin-like protei 100.0 1.4E-35 4.8E-40 273.5 7.9 121 497-642 10-130 (140)
11 2owa_A Arfgap-like finger doma 100.0 1.8E-31 6E-36 244.4 8.3 110 500-637 24-133 (138)
12 2crw_A ARF GAP 3, ADP-ribosyla 100.0 1E-30 3.6E-35 241.7 6.4 89 499-588 16-104 (149)
13 3dwd_A ADP-ribosylation factor 100.0 1.6E-30 5.5E-35 237.2 6.5 86 498-585 24-109 (147)
14 3lju_X ARF-GAP with dual PH do 100.0 2.9E-30 1E-34 284.9 8.4 121 497-642 19-139 (386)
15 2p57_A GTPase-activating prote 100.0 2E-29 6.9E-34 230.4 6.7 86 499-585 24-109 (144)
16 3sub_A ADP-ribosylation factor 100.0 2.4E-29 8.2E-34 232.5 5.9 88 499-588 8-96 (163)
17 4gpm_A Engineered protein OR26 99.9 2.2E-27 7.5E-32 233.0 13.0 158 649-832 3-160 (169)
18 3o47_A ADP-ribosylation factor 99.9 3.3E-24 1.1E-28 233.2 7.1 88 498-587 23-110 (329)
19 1ihb_A P18-INK4C(INK6), cyclin 99.9 7E-23 2.4E-27 198.7 13.0 157 649-832 4-161 (162)
20 2y1l_E Darpin-8.4; hydrolase-i 99.9 7.4E-22 2.5E-26 193.3 13.6 155 651-831 15-169 (169)
21 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.5E-21 8.5E-26 186.6 13.5 152 652-830 4-155 (156)
22 4b93_B Ankyrin repeat domain-c 99.9 1.2E-21 4E-26 207.5 12.2 164 652-817 54-229 (269)
23 3hra_A Ankyrin repeat family p 99.9 3E-21 1E-25 194.1 14.3 177 652-831 7-201 (201)
24 3twr_A Tankyrase-2; ankyrin re 99.9 9.7E-22 3.3E-26 191.4 9.5 156 651-832 9-164 (165)
25 2rfa_A Transient receptor pote 99.8 2.3E-21 7.8E-26 199.8 12.7 176 652-831 5-220 (232)
26 1awc_B Protein (GA binding pro 99.8 2.7E-21 9.1E-26 186.0 11.8 150 651-827 3-152 (153)
27 3v31_A Ankyrin repeat family A 99.8 2.5E-21 8.7E-26 188.9 11.7 154 652-831 5-158 (167)
28 2f8y_A Notch homolog 1, transl 99.8 7.1E-21 2.4E-25 194.7 15.5 176 652-832 27-215 (223)
29 3f6q_A Integrin-linked protein 99.8 1.3E-21 4.3E-26 193.5 9.3 158 650-832 5-162 (179)
30 3v30_A DNA-binding protein rfx 99.8 3.2E-21 1.1E-25 189.2 11.7 154 652-831 4-158 (172)
31 2rfm_A Putative ankyrin repeat 99.8 2.6E-21 9E-26 193.5 10.9 154 652-831 37-190 (192)
32 1oy3_D Transcription factor in 99.8 6.6E-21 2.3E-25 201.9 14.5 106 725-832 143-249 (282)
33 3ljn_A Hypothetical protein; a 99.8 3.3E-21 1.1E-25 213.0 12.1 179 651-832 54-268 (364)
34 1yyh_A HN1;, notch 1, ankyrin 99.8 1.1E-20 3.8E-25 197.8 15.4 174 652-830 59-245 (253)
35 2etb_A Transient receptor pote 99.8 1.5E-21 5.2E-26 204.5 8.4 175 653-831 5-244 (256)
36 2rlo_A Centaurin-gamma 1; spli 99.8 6.4E-21 2.2E-25 177.8 11.0 117 291-432 2-128 (128)
37 4hbd_A KN motif and ankyrin re 99.8 5.7E-21 2E-25 203.0 11.8 157 652-832 113-274 (276)
38 2dzn_A Probable 26S proteasome 99.8 2.5E-20 8.4E-25 191.2 15.3 127 703-831 70-198 (228)
39 4gpm_A Engineered protein OR26 99.8 1.6E-20 5.4E-25 184.1 12.6 113 718-832 15-127 (169)
40 1s70_B 130 kDa myosin-binding 99.8 1.7E-20 5.9E-25 200.9 13.7 156 651-832 41-256 (299)
41 1d9s_A Cyclin-dependent kinase 99.8 4.1E-21 1.4E-25 180.9 7.4 123 705-832 12-135 (136)
42 3aji_A 26S proteasome non-ATPa 99.8 3.6E-20 1.2E-24 190.5 15.0 176 651-831 41-228 (231)
43 1wi1_A Calcium-dependent activ 99.8 2.3E-20 7.8E-25 168.4 11.1 95 293-428 8-110 (126)
44 3t8k_A Uncharacterized protein 99.8 2.7E-21 9.2E-26 192.7 5.4 153 652-829 8-175 (186)
45 1ikn_D Protein (I-kappa-B-alph 99.8 9.1E-21 3.1E-25 196.0 9.2 157 652-832 47-208 (236)
46 2jab_A H10-2-G3; HER2, darpin, 99.8 5.9E-20 2E-24 172.9 13.9 122 651-831 15-136 (136)
47 3jxi_A Vanilloid receptor-rela 99.8 6.2E-21 2.1E-25 200.2 7.5 177 652-832 7-249 (260)
48 4b93_B Ankyrin repeat domain-c 99.8 3.1E-20 1.1E-24 196.4 12.7 176 652-832 13-209 (269)
49 1yyh_A HN1;, notch 1, ankyrin 99.8 3.9E-20 1.3E-24 193.6 12.7 178 652-832 12-214 (253)
50 1k1a_A B-cell lymphoma 3-encod 99.8 9.7E-20 3.3E-24 188.3 15.4 175 652-831 48-239 (241)
51 3b7b_A Euchromatic histone-lys 99.8 1.4E-19 4.9E-24 186.8 15.9 164 652-818 46-222 (237)
52 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1E-19 3.6E-24 159.2 12.6 92 739-832 1-92 (93)
53 2fo1_E LIN-12 protein; beta-ba 99.8 6.7E-20 2.3E-24 203.5 14.0 179 651-832 167-370 (373)
54 3aji_A 26S proteasome non-ATPa 99.8 3.7E-20 1.3E-24 190.4 10.3 177 652-832 8-196 (231)
55 2da0_A 130-kDa phosphatidylino 99.8 1.5E-19 5.1E-24 164.8 12.5 100 290-433 7-106 (114)
56 3utm_A Tankyrase-1; tankyrase, 99.8 1.5E-19 5.3E-24 197.5 14.9 177 651-832 59-304 (351)
57 1k1a_A B-cell lymphoma 3-encod 99.8 3.9E-20 1.3E-24 191.3 9.3 179 652-832 11-207 (241)
58 4g8k_A 2-5A-dependent ribonucl 99.8 8.6E-20 3E-24 199.4 12.3 153 652-832 170-325 (337)
59 1ycs_B 53BP2, P53BP2; ankyrin 99.8 1.7E-20 5.8E-25 194.8 6.3 153 652-831 7-162 (239)
60 2pnn_A Transient receptor pote 99.8 3.9E-20 1.3E-24 195.8 8.8 126 703-832 99-257 (273)
61 2xai_A ASB-9, ankyrin repeat a 99.8 1.6E-19 5.4E-24 190.0 11.9 174 652-832 5-190 (261)
62 2f8y_A Notch homolog 1, transl 99.8 3.2E-19 1.1E-23 182.4 13.7 167 663-832 3-182 (223)
63 1wdy_A 2-5A-dependent ribonucl 99.8 5.3E-19 1.8E-23 187.1 15.5 177 652-832 74-277 (285)
64 1ikn_D Protein (I-kappa-B-alph 99.8 2.2E-19 7.6E-24 185.5 12.0 155 652-832 10-175 (236)
65 4g8k_A 2-5A-dependent ribonucl 99.8 4.2E-19 1.4E-23 193.9 13.8 177 652-832 61-297 (337)
66 3d9h_A CDNA FLJ77766, highly s 99.8 5.3E-19 1.8E-23 188.6 13.0 174 652-832 61-246 (285)
67 1n0r_A 4ANK, 4 ankyrin repeats 99.8 7.2E-19 2.5E-23 162.1 11.9 124 705-832 2-125 (126)
68 1bi7_B P16INK4A, MTS1, multipl 99.8 2E-19 7E-24 173.5 7.9 125 703-832 10-135 (156)
69 2xai_A ASB-9, ankyrin repeat a 99.8 5.3E-19 1.8E-23 185.9 11.8 174 651-832 37-221 (261)
70 1n11_A Ankyrin; clathrin, BAND 99.8 1.7E-18 5.8E-23 196.1 16.5 176 652-832 181-368 (437)
71 3kea_A K1L; tropism, ANK repea 99.8 2E-19 6.8E-24 192.0 8.1 175 652-832 33-219 (285)
72 2rsg_A Collagen type IV alpha- 99.8 5.7E-19 1.9E-23 155.0 9.5 92 293-426 1-92 (94)
73 1v88_A Oxysterol binding prote 99.8 1.3E-18 4.3E-23 161.7 11.8 95 291-428 6-124 (130)
74 2d9x_A Oxysterol binding prote 99.8 9.6E-19 3.3E-23 161.1 10.6 104 289-433 4-109 (120)
75 2rfm_A Putative ankyrin repeat 99.8 1.5E-18 5E-23 173.4 12.8 130 699-832 29-158 (192)
76 3v31_A Ankyrin repeat family A 99.8 1.2E-18 4.3E-23 169.7 11.9 124 705-832 3-126 (167)
77 3b7b_A Euchromatic histone-lys 99.8 1.7E-18 5.9E-23 178.7 13.6 176 652-832 13-201 (237)
78 2vge_A RELA-associated inhibit 99.8 1.4E-19 4.9E-24 186.6 4.8 142 668-831 2-146 (229)
79 2fo1_E LIN-12 protein; beta-ba 99.8 6.8E-19 2.3E-23 195.4 10.6 177 652-832 127-337 (373)
80 3utm_A Tankyrase-1; tankyrase, 99.8 2.6E-18 8.7E-23 187.8 15.0 173 652-831 93-332 (351)
81 1oy3_D Transcription factor in 99.8 1.7E-18 5.7E-23 183.4 12.6 164 652-818 47-270 (282)
82 2dhk_A TBC1 domain family memb 99.8 4.4E-18 1.5E-22 156.4 13.5 102 291-433 6-109 (119)
83 3d9h_A CDNA FLJ77766, highly s 99.8 2.1E-18 7.2E-23 184.0 12.8 173 651-831 93-276 (285)
84 3eu9_A Huntingtin-interacting 99.8 2.4E-18 8.3E-23 177.2 12.7 176 652-832 44-234 (240)
85 1bi7_B P16INK4A, MTS1, multipl 99.8 1.4E-18 4.8E-23 167.6 10.0 138 651-813 13-151 (156)
86 1x1f_A Signal-transducing adap 99.8 3.9E-18 1.3E-22 161.7 12.1 97 291-428 16-113 (149)
87 2y1l_E Darpin-8.4; hydrolase-i 99.8 3E-18 1E-22 167.5 11.8 121 708-832 17-137 (169)
88 3c5r_A BARD-1, BRCA1-associate 99.8 2.3E-19 7.9E-24 168.9 3.5 125 703-831 8-132 (137)
89 2d9v_A Pleckstrin homology dom 99.7 5.9E-18 2E-22 158.0 13.0 108 289-428 4-114 (130)
90 1v5p_A Pleckstrin homology dom 99.7 2.2E-18 7.5E-23 159.3 9.8 100 294-428 16-120 (126)
91 2coc_A FYVE, rhogef and PH dom 99.7 4E-18 1.4E-22 153.5 11.1 94 293-427 8-105 (112)
92 3c5r_A BARD-1, BRCA1-associate 99.7 5.6E-18 1.9E-22 159.4 12.6 100 730-832 1-100 (137)
93 3kea_A K1L; tropism, ANK repea 99.7 1.4E-18 4.8E-23 185.3 9.4 169 656-831 5-184 (285)
94 3f6q_A Integrin-linked protein 99.7 5.5E-18 1.9E-22 167.3 13.0 124 706-832 6-129 (179)
95 1wdy_A 2-5A-dependent ribonucl 99.7 5.9E-18 2E-22 179.0 13.7 154 652-830 7-170 (285)
96 3v30_A DNA-binding protein rfx 99.7 5E-18 1.7E-22 166.2 12.1 124 706-832 3-126 (172)
97 1n11_A Ankyrin; clathrin, BAND 99.7 7.1E-18 2.4E-22 191.0 14.6 177 651-832 48-236 (437)
98 1ihb_A P18-INK4C(INK6), cyclin 99.7 3E-18 1E-22 165.8 9.8 121 707-832 7-127 (162)
99 1wgq_A FYVE, rhogef and PH dom 99.7 8.9E-18 3E-22 151.7 11.9 96 291-427 6-102 (109)
100 3twr_A Tankyrase-2; ankyrin re 99.7 1.2E-17 4E-22 162.4 13.3 123 707-832 10-132 (165)
101 1awc_B Protein (GA binding pro 99.7 4.9E-18 1.7E-22 163.0 10.4 105 725-832 20-124 (153)
102 1pls_A Pleckstrin homology dom 99.7 1.6E-17 5.6E-22 151.0 13.3 99 292-431 4-104 (113)
103 3eu9_A Huntingtin-interacting 99.7 1.1E-17 3.7E-22 172.3 13.6 176 652-832 11-201 (240)
104 1sw6_A Regulatory protein SWI6 99.7 9.9E-19 3.4E-23 190.4 6.1 32 731-762 192-227 (327)
105 2p0d_A RHO GTPase-activating p 99.7 9.7E-18 3.3E-22 156.1 11.7 111 291-430 10-126 (129)
106 1wjm_A Beta-spectrin III; PH d 99.7 7.2E-18 2.5E-22 155.9 10.1 105 291-429 6-118 (123)
107 2z0v_A SH3-containing GRB2-lik 99.7 1.7E-16 5.9E-21 163.7 21.5 191 15-220 16-228 (240)
108 2dn6_A KIAA0640 protein; PH do 99.7 1.8E-17 6.2E-22 151.1 12.5 101 291-432 6-107 (115)
109 4hbd_A KN motif and ankyrin re 99.7 3.5E-18 1.2E-22 181.4 8.7 152 654-831 80-240 (276)
110 1d9s_A Cyclin-dependent kinase 99.7 6.6E-18 2.3E-22 158.8 9.5 100 730-832 2-102 (136)
111 3cxb_B Pleckstrin homology dom 99.7 1.7E-17 5.7E-22 150.5 11.7 95 295-429 2-102 (112)
112 2cod_A Centaurin-delta 1; ARF 99.7 2.5E-17 8.7E-22 150.3 13.0 97 289-429 4-100 (115)
113 2cof_A Protein KIAA1914; PH do 99.7 4.6E-18 1.6E-22 153.0 7.8 95 291-428 6-101 (107)
114 1bd8_A P19INK4D CDK4/6 inhibit 99.7 9.8E-18 3.4E-22 161.2 10.1 119 708-830 5-123 (156)
115 1fao_A Dual adaptor of phospho 99.7 1.8E-17 6.2E-22 153.9 11.5 98 291-429 16-113 (126)
116 1upq_A PEPP1; PH domain, phosp 99.7 2.7E-17 9.3E-22 151.9 12.6 99 291-429 9-110 (123)
117 3aaa_C Myotrophin, protein V-1 99.7 1.3E-17 4.4E-22 153.8 10.1 115 706-827 8-122 (123)
118 3deo_A Signal recognition part 99.7 4.6E-18 1.6E-22 168.6 7.5 121 705-830 44-181 (183)
119 2l6b_A NR1C; ankyrin, consensu 99.7 1.1E-17 3.6E-22 152.3 9.2 96 735-832 4-99 (115)
120 1u5d_A SKAP55, SRC kinase-asso 99.7 1.8E-17 6.1E-22 149.2 10.5 99 292-430 2-107 (108)
121 2rfa_A Transient receptor pote 99.7 2.4E-17 8.1E-22 169.6 12.7 142 687-832 13-182 (232)
122 1s70_B 130 kDa myosin-binding 99.7 8.4E-18 2.9E-22 179.9 9.5 174 651-828 74-284 (299)
123 3ehr_A Osteoclast-stimulating 99.7 2.7E-18 9.1E-23 175.8 5.4 130 699-832 67-197 (222)
124 2i5f_A Pleckstrin; PH domain, 99.7 3.4E-17 1.2E-21 147.7 12.1 97 291-427 5-108 (109)
125 2dkp_A Pleckstrin homology dom 99.7 3.4E-17 1.2E-21 152.4 12.0 99 290-428 18-119 (128)
126 3aj4_A Pleckstrin homology dom 99.7 2.9E-17 1E-21 149.1 11.0 103 291-427 3-110 (112)
127 1v89_A Hypothetical protein KI 99.7 4.5E-17 1.5E-21 149.1 12.2 98 290-428 5-112 (118)
128 1sw6_A Regulatory protein SWI6 99.7 6.8E-18 2.3E-22 183.8 7.8 161 667-830 35-227 (327)
129 1ycs_B 53BP2, P53BP2; ankyrin 99.7 1.5E-17 5.1E-22 172.5 10.1 124 704-832 4-127 (239)
130 1v5u_A SBF1, SET binding facto 99.7 2.7E-17 9.4E-22 150.4 10.6 97 291-427 6-110 (117)
131 1unq_A RAC-alpha serine/threon 99.7 2.6E-17 8.8E-22 152.6 10.5 102 291-432 6-114 (125)
132 3ui2_A Signal recognition part 99.7 9.7E-18 3.3E-22 174.6 8.4 120 706-830 46-182 (244)
133 2dzn_A Probable 26S proteasome 99.7 5.5E-17 1.9E-21 166.1 13.5 157 652-831 4-163 (228)
134 3rcp_A Pleckstrin homology dom 99.7 1.9E-17 6.5E-22 147.9 8.6 93 295-429 1-94 (103)
135 4a6h_A Phosphatidylinositol 4, 99.7 2.9E-17 9.8E-22 150.0 9.9 97 293-427 6-117 (120)
136 3aaa_C Myotrophin, protein V-1 99.7 5.1E-17 1.7E-21 149.8 11.6 94 737-832 4-97 (123)
137 2lul_A Tyrosine-protein kinase 99.7 5.7E-17 2E-21 157.4 12.3 99 291-428 13-121 (164)
138 2yry_A Pleckstrin homology dom 99.7 8.9E-17 3E-21 148.2 13.1 99 290-428 19-120 (122)
139 2etb_A Transient receptor pote 99.7 1.6E-17 5.4E-22 173.8 8.8 129 701-831 39-204 (256)
140 1fgy_A GRP1; PH domain, signal 99.7 6.4E-17 2.2E-21 150.2 11.8 96 292-429 4-121 (127)
141 1x05_A Pleckstrin; PH domain, 99.7 4.8E-17 1.7E-21 151.6 10.9 99 290-428 15-120 (129)
142 2d9y_A Pleckstrin homology dom 99.7 6.7E-17 2.3E-21 147.8 11.4 97 291-427 9-108 (117)
143 2w2x_D 1-phosphatidylinositol- 99.7 3.3E-17 1.1E-21 151.5 9.2 102 291-429 10-120 (124)
144 1btk_A Bruton'S tyrosine kinas 99.7 5E-17 1.7E-21 158.3 10.9 34 395-428 99-132 (169)
145 1dyn_A Dynamin; signal transdu 99.7 4.1E-17 1.4E-21 145.1 9.0 94 292-426 11-115 (125)
146 2zgd_A 3 repeat synthetic anky 99.7 7.3E-17 2.5E-21 145.8 10.7 94 732-827 16-109 (110)
147 3jxi_A Vanilloid receptor-rela 99.7 3E-17 1E-21 172.1 9.1 129 703-831 44-208 (260)
148 1eaz_A Tandem PH domain contai 99.7 5.8E-17 2E-21 150.1 9.7 99 291-430 12-113 (125)
149 1wg7_A Dedicator of cytokinesi 99.7 6E-17 2.1E-21 155.2 9.9 103 290-431 15-127 (150)
150 1u5f_A SRC-associated adaptor 99.7 8.7E-17 3E-21 153.7 11.0 100 291-430 15-121 (148)
151 1btn_A Beta-spectrin; signal t 99.7 7.4E-17 2.5E-21 144.7 9.8 98 295-426 1-106 (106)
152 1u5e_A SRC-associated adaptor 99.7 1.2E-16 4.2E-21 161.3 12.5 99 291-429 104-209 (211)
153 1x1g_A Pleckstrin 2; PH domain 99.7 1.1E-16 3.6E-21 149.3 10.8 99 291-428 16-124 (129)
154 3ljn_A Hypothetical protein; a 99.7 4.4E-17 1.5E-21 179.9 9.0 177 651-832 21-235 (364)
155 3hra_A Ankyrin repeat family p 99.7 1.7E-16 5.7E-21 159.2 11.8 144 687-832 15-169 (201)
156 2jab_A H10-2-G3; HER2, darpin, 99.7 1.5E-16 5E-21 149.5 10.6 94 737-832 11-104 (136)
157 2y7b_A Actin-binding protein a 99.7 1.2E-16 4.1E-21 150.0 9.0 101 292-430 4-130 (134)
158 2pnn_A Transient receptor pote 99.7 1.3E-16 4.4E-21 168.6 9.7 163 652-831 15-216 (273)
159 1dro_A Beta-spectrin; cytoskel 99.7 2.3E-16 7.7E-21 145.5 9.7 105 291-428 6-119 (122)
160 2j59_M RHO-GTPase activating p 99.6 2.7E-16 9.4E-21 153.7 10.3 98 293-428 3-111 (168)
161 1zww_A SH3-containing GRB2-lik 99.6 1.2E-14 4.2E-19 151.4 23.4 191 16-221 33-245 (256)
162 1n0r_A 4ANK, 4 ankyrin repeats 99.6 9.3E-16 3.2E-20 141.0 12.5 92 739-832 1-92 (126)
163 3deo_A Signal recognition part 99.6 3E-16 1E-20 155.5 7.9 93 737-832 41-134 (183)
164 2vge_A RELA-associated inhibit 99.6 1.6E-15 5.4E-20 156.2 13.5 104 727-832 5-111 (229)
165 3ehr_A Osteoclast-stimulating 99.6 7.9E-16 2.7E-20 157.3 10.2 95 736-832 69-164 (222)
166 3a8p_A T-lymphoma invasion and 99.6 1.3E-15 4.6E-20 158.7 12.0 108 291-432 9-128 (263)
167 3t8k_A Uncharacterized protein 99.6 1.9E-16 6.5E-21 157.5 4.6 100 733-832 30-145 (186)
168 3ui2_A Signal recognition part 99.6 5.9E-16 2E-20 161.0 7.6 93 737-832 42-135 (244)
169 3pp2_A RHO GTPase-activating p 99.6 3.2E-15 1.1E-19 138.0 11.6 110 291-428 6-123 (124)
170 1qqg_A IRS-1, insulin receptor 99.6 1.7E-15 5.7E-20 158.0 8.2 100 291-430 8-114 (264)
171 3tfm_A Myosin X; split PH doma 99.6 3.5E-15 1.2E-19 152.9 9.8 97 290-428 55-155 (228)
172 1n0q_A 3ANK, 3 ankyrin repeats 99.6 3.6E-15 1.2E-19 130.1 8.2 92 705-798 2-93 (93)
173 3lju_X ARF-GAP with dual PH do 99.6 8.1E-15 2.8E-19 161.6 12.9 99 291-429 267-373 (386)
174 2l6b_A NR1C; ankyrin, consensu 99.6 1.6E-15 5.4E-20 137.8 4.6 107 702-810 6-112 (115)
175 2dtc_A RAL guanine nucleotide 99.5 2.2E-14 7.7E-19 130.4 11.8 102 295-428 3-112 (126)
176 2r09_A Cytohesin-3; autoinhibi 99.5 1.2E-14 4.1E-19 158.3 11.4 95 292-428 212-328 (347)
177 2b0o_E UPLC1; arfgap, structur 99.5 2.9E-15 1E-19 160.8 3.1 107 706-818 191-298 (301)
178 2aja_A Ankyrin repeat family p 99.5 1E-15 3.5E-20 169.1 -2.9 90 738-830 126-221 (376)
179 2fjl_A 1-phosphatidylinositol- 99.5 2.1E-13 7.4E-18 126.0 13.0 133 294-429 2-149 (150)
180 3tca_A Amyloid beta A4 precurs 99.5 6E-14 2.1E-18 149.8 9.1 100 289-427 164-275 (291)
181 2aja_A Ankyrin repeat family p 99.5 4E-16 1.4E-20 172.3 -8.8 146 652-831 94-248 (376)
182 3jue_A Arfgap with coiled-coil 99.4 1.4E-13 4.6E-18 151.5 10.5 97 734-832 193-292 (368)
183 2ys3_A UNC-112-related protein 99.4 5.7E-13 1.9E-17 120.7 10.7 98 291-426 7-110 (137)
184 3lvq_E ARF-GAP with SH3 domain 99.4 1.1E-13 3.8E-18 159.3 7.2 105 705-815 171-276 (497)
185 2rov_A RHO-associated protein 99.4 1.3E-12 4.5E-17 118.5 8.8 97 295-428 3-115 (117)
186 2d9w_A Docking protein 2; PH d 99.3 4.4E-12 1.5E-16 112.4 11.1 100 291-426 10-119 (127)
187 1dcq_A PYK2-associated protein 99.3 2.7E-12 9.4E-17 136.0 11.8 91 740-832 130-229 (278)
188 3a8n_A TIAM-1, T-lymphoma inva 99.3 1.5E-12 5.2E-17 134.9 8.7 107 291-431 9-127 (279)
189 2fic_A Bridging integrator 1; 99.3 1.7E-10 5.8E-15 120.1 24.3 195 16-220 54-250 (251)
190 2zgd_A 3 repeat synthetic anky 99.2 6.1E-12 2.1E-16 113.2 6.4 86 705-792 24-109 (110)
191 1uru_A Amphiphysin; endocytosi 99.2 1E-09 3.4E-14 113.8 23.3 197 15-221 38-238 (244)
192 3hk0_A Growth factor receptor- 99.2 5.9E-11 2E-15 121.7 10.5 101 290-428 129-240 (256)
193 4ejn_A RAC-alpha serine/threon 99.2 3.4E-11 1.2E-15 136.6 8.9 101 292-430 5-110 (446)
194 4gmv_A RAS-associated and plec 99.1 8.1E-11 2.8E-15 122.1 9.5 101 290-428 155-266 (281)
195 3mpx_A FYVE, rhogef and PH dom 99.0 6.7E-09 2.3E-13 117.1 20.3 100 292-433 243-342 (434)
196 1w1g_A HPDK1, 3-phosphoinositi 99.0 1.4E-09 5E-14 100.3 10.2 94 291-433 50-144 (151)
197 4bbk_A Kindlin-1, fermitin fam 99.0 1.2E-09 4.2E-14 99.8 9.1 99 291-427 24-128 (165)
198 4f7h_A Fermitin family homolog 99.0 1.6E-09 5.4E-14 100.3 9.4 98 292-427 46-149 (173)
199 2coa_A Protein kinase C, D2 ty 98.9 4.6E-09 1.6E-13 93.0 9.5 101 290-427 5-118 (125)
200 4avm_A Bridging integrator 2; 98.9 3.3E-07 1.1E-11 93.7 24.5 196 15-221 34-232 (237)
201 4a3a_A Amphiphysin; structural 98.8 1.3E-06 4.5E-11 89.4 26.8 195 16-221 40-237 (243)
202 2d9z_A Protein kinase C, NU ty 98.8 4.4E-08 1.5E-12 87.0 12.1 103 290-428 5-123 (129)
203 1i4d_A Arfaptin 2, partner of 98.8 1.3E-06 4.5E-11 86.6 23.0 187 18-211 8-201 (224)
204 2vrw_B P95VAV, VAV1, proto-onc 98.6 5.4E-06 1.9E-10 92.3 25.2 100 292-431 233-338 (406)
205 3ky9_A Proto-oncogene VAV; cal 98.4 1.5E-05 5.1E-10 93.0 22.3 100 292-431 405-510 (587)
206 2ykt_A Brain-specific angiogen 98.4 6E-05 2.1E-09 77.0 22.7 196 17-214 18-227 (253)
207 1zc3_B Exocyst complex protein 98.3 3.6E-06 1.2E-10 75.3 11.6 104 293-432 8-111 (113)
208 3ok8_A Brain-specific angiogen 98.1 0.00056 1.9E-08 67.3 22.3 197 12-211 11-213 (222)
209 2pz1_A RHO guanine nucleotide 98.0 0.00068 2.3E-08 76.7 24.5 105 292-433 333-445 (466)
210 1dbh_A Protein (human SOS 1); 98.0 0.0005 1.7E-08 74.8 21.9 104 291-428 245-349 (354)
211 3t06_A PDZ-rhogef, RHO guanine 98.0 0.0004 1.4E-08 77.4 21.4 113 291-430 293-410 (418)
212 1v5m_A SH2 and PH domain-conta 97.9 8.6E-05 2.9E-09 66.1 11.4 104 290-429 15-131 (136)
213 2dfk_A Collybistin II; DH doma 97.9 0.00067 2.3E-08 75.2 21.7 106 291-433 255-368 (402)
214 2d1l_A Metastasis suppressor p 97.9 0.0016 5.5E-08 66.0 21.7 128 11-138 11-142 (253)
215 3odw_A RHO guanine nucleotide 97.9 0.011 3.6E-07 67.9 31.0 113 291-431 410-527 (536)
216 1v61_A RAC/CDC42 guanine nucle 97.8 0.00011 3.9E-09 67.0 11.3 55 375-429 72-127 (132)
217 1xcg_A PDZ-rhogef, RHO guanine 97.8 0.0027 9.2E-08 69.3 23.7 113 291-430 251-368 (368)
218 3p6a_A RHO guanine nucleotide 97.7 0.028 9.5E-07 61.4 30.9 112 292-430 258-373 (377)
219 3qwm_A Iqsec1, IQ motif and SE 97.7 0.00019 6.5E-09 65.6 10.9 41 391-431 79-125 (140)
220 4akv_A Sorting nexin-33; trans 97.7 0.0011 3.9E-08 72.5 18.5 155 52-216 227-383 (386)
221 2efl_A Formin-binding protein 97.5 0.019 6.4E-07 60.7 25.1 173 7-182 3-205 (305)
222 1txd_A RHO guanine nucleotide 97.5 0.003 1E-07 69.4 19.4 117 291-433 255-374 (385)
223 3tfm_A Myosin X; split PH doma 97.5 6.7E-05 2.3E-09 76.3 5.0 38 289-328 17-54 (228)
224 3dyt_A Sorting nexin-9; 3-heli 97.5 0.0062 2.1E-07 66.2 20.8 151 52-215 207-362 (366)
225 2lg1_A A-kinase anchor protein 97.3 0.0013 4.5E-08 64.1 11.5 105 291-433 69-177 (185)
226 3ksy_A SOS-1, SON of sevenless 97.3 0.0035 1.2E-07 77.7 17.7 102 292-428 443-546 (1049)
227 2efk_A CDC42-interacting prote 97.2 0.15 5.1E-06 53.6 26.7 163 22-184 8-200 (301)
228 1mai_A Phospholipase C delta-1 97.2 0.0013 4.6E-08 60.3 9.2 38 393-430 84-123 (131)
229 1kz7_A Guanine nucleotide exch 97.1 0.0026 9E-08 69.0 12.6 109 292-432 209-329 (353)
230 1foe_A T-lymphoma invasion and 97.1 0.12 4.2E-06 56.3 25.6 59 375-433 304-371 (377)
231 3ml4_A Protein DOK-7; tyrosine 97.0 0.0013 4.4E-08 64.4 7.5 96 293-426 9-111 (224)
232 1nty_A Triple functional domai 96.9 0.0037 1.3E-07 66.6 11.5 103 292-430 202-310 (311)
233 2z0q_A XPLN, RHO guanine nucle 96.9 0.12 4.2E-06 55.5 23.6 35 393-427 307-345 (346)
234 3caz_A BAR protein; thermo-aci 96.9 0.1 3.4E-06 48.7 19.1 101 101-203 101-203 (294)
235 3haj_A Human pacsin2 F-BAR; pa 96.9 0.06 2.1E-06 60.8 21.9 172 26-200 27-235 (486)
236 2v0o_A FCHO2, FCH domain only 96.9 0.4 1.4E-05 49.5 26.3 92 22-114 19-110 (276)
237 3jzy_A Intersectin 2; C2 domai 96.9 0.00016 5.6E-09 82.8 0.0 115 292-433 252-367 (510)
238 2x3v_A Syndapin I, protein kin 96.8 0.14 4.7E-06 54.9 22.8 166 23-191 22-224 (337)
239 2rgn_B RHOA/RAC/CDC42 exchange 96.8 0.0058 2E-07 66.3 11.6 106 292-430 206-320 (354)
240 3aco_A Pacsin2, protein kinase 96.7 0.13 4.5E-06 55.4 21.9 159 23-183 31-226 (350)
241 2q13_A DCC-interacting protein 96.7 0.15 5E-06 55.8 22.5 155 19-174 19-176 (385)
242 4h8s_A DCC-interacting protein 96.7 0.24 8.2E-06 54.5 24.0 123 19-142 42-166 (407)
243 2q12_A DIP13 alpha, DCC-intera 96.6 0.22 7.6E-06 51.3 21.9 213 19-235 19-238 (265)
244 4dyl_A Tyrosine-protein kinase 96.3 0.35 1.2E-05 53.1 22.3 150 28-180 19-195 (406)
245 3g9g_A Suppressor of yeast pro 96.3 0.087 3E-06 54.5 16.1 170 21-204 43-239 (287)
246 3abh_A Pacsin2, protein kinase 96.1 0.14 4.9E-06 54.1 17.3 89 23-113 31-125 (312)
247 3v5w_A G-protein coupled recep 95.1 0.069 2.4E-06 62.3 10.7 95 291-428 557-652 (689)
248 3m3w_A Pacsin3, protein kinase 94.9 1.6 5.4E-05 46.1 19.9 87 24-112 23-115 (320)
249 3i2w_A Syndapin, LD46328P; EFC 94.5 2.2 7.6E-05 44.2 19.6 38 76-113 67-104 (290)
250 1z87_A Alpha-1-syntrophin; pro 93.1 0.091 3.1E-06 53.9 5.5 36 393-428 225-262 (263)
251 1fho_A UNC-89; pleckstrin homo 92.8 0.14 4.9E-06 45.6 5.6 100 291-428 8-112 (119)
252 2adz_A Alpha-1-syntrophin; pro 92.6 0.15 5.1E-06 48.4 5.7 52 376-428 122-177 (178)
253 3zvr_A Dynamin-1; hydrolase, D 89.7 15 0.00052 43.3 20.1 92 293-423 540-640 (772)
254 3qwe_A GMIP, GEM-interacting p 84.5 38 0.0013 34.5 23.4 165 20-184 13-205 (279)
255 2v0o_A FCHO2, FCH domain only 83.1 42 0.0014 33.9 21.2 22 115-136 135-156 (276)
256 3plt_A Sphingolipid long chain 81.1 39 0.0013 33.3 14.8 95 25-125 20-116 (234)
257 2z0v_A SH3-containing GRB2-lik 80.0 50 0.0017 32.8 23.6 208 18-243 12-223 (240)
258 1gnf_A Transcription factor GA 76.5 1.5 5.1E-05 31.6 2.4 37 511-547 3-40 (46)
259 2vut_I AREA, nitrogen regulato 73.6 1.9 6.6E-05 30.6 2.4 34 513-546 2-36 (43)
260 2zkm_X 1-phosphatidylinositol- 72.5 9.6 0.00033 45.4 9.5 38 394-431 96-138 (799)
261 3dfx_A Trans-acting T-cell-spe 70.9 1.9 6.3E-05 33.4 1.9 38 510-547 5-43 (63)
262 4gat_A Nitrogen regulatory pro 69.2 3.1 0.00011 32.5 2.8 37 511-547 8-45 (66)
263 3qwe_A GMIP, GEM-interacting p 68.7 1.1E+02 0.0036 31.2 19.9 116 79-196 97-223 (279)
264 3qr0_A Phospholipase C-beta (P 66.9 14 0.00049 43.8 9.3 38 394-431 103-145 (816)
265 1uru_A Amphiphysin; endocytosi 66.9 99 0.0034 30.4 14.6 24 20-43 36-59 (244)
266 1deq_A Fibrinogen (alpha chain 61.0 1.3E+02 0.0045 31.6 13.9 28 12-42 54-81 (390)
267 3ohm_B 1-phosphatidylinositol- 59.0 17 0.00058 43.6 8.0 38 394-431 100-142 (885)
268 2kae_A GATA-type transcription 58.8 2.8 9.6E-05 33.2 0.8 36 512-548 8-46 (71)
269 2fic_A Bridging integrator 1; 57.5 1.5E+02 0.0052 29.2 18.1 22 22-43 53-74 (251)
270 4akv_A Sorting nexin-33; trans 54.8 2.2E+02 0.0076 30.3 21.5 25 105-129 278-302 (386)
271 1u5k_A Hypothetical protein; O 54.7 7.9 0.00027 38.9 3.7 49 510-576 148-196 (244)
272 4hc9_A Trans-acting T-cell-spe 50.7 7.4 0.00025 34.1 2.3 36 512-547 5-41 (115)
273 1hs7_A Syntaxin VAM3; UP-and-D 49.4 26 0.00088 29.6 5.3 29 7-35 33-62 (97)
274 3g9m_A Glucocorticoid receptor 49.1 7.3 0.00025 32.5 1.9 30 511-543 1-30 (90)
275 4dyl_A Tyrosine-protein kinase 47.2 2.9E+02 0.01 29.5 15.3 110 78-195 100-213 (406)
276 3swy_A Cyclic nucleotide-gated 46.7 77 0.0026 22.7 6.6 38 207-244 5-42 (46)
277 1hcq_A Protein (estrogen recep 45.5 10 0.00036 31.1 2.3 31 511-544 3-33 (84)
278 1r4i_A Androgen receptor; AR, 43.7 8.8 0.0003 33.0 1.6 33 509-544 4-36 (105)
279 3ghg_A Fibrinogen alpha chain; 43.2 3.7E+02 0.013 29.5 15.0 19 164-182 107-125 (562)
280 3a98_B Engulfment and cell mot 42.6 1.3E+02 0.0046 28.9 10.1 32 395-426 116-148 (203)
281 2jqq_A Conserved oligomeric go 41.8 2.3E+02 0.0079 26.7 12.3 125 102-241 58-183 (204)
282 2ebl_A COUP transcription fact 39.7 11 0.00039 31.3 1.6 31 511-544 6-36 (89)
283 3dyt_A Sorting nexin-9; 3-heli 39.5 3.6E+02 0.012 28.3 15.9 26 17-42 164-189 (366)
284 4hc9_A Trans-acting T-cell-spe 38.6 18 0.0006 31.7 2.8 39 510-548 57-96 (115)
285 1tjl_A DNAK suppressor protein 38.5 7.7 0.00026 35.8 0.5 34 510-543 109-143 (151)
286 2han_B Ecdysone receptor; tran 38.4 13 0.00045 32.7 2.0 31 511-544 7-37 (119)
287 2nll_B Protein (thyroid hormon 38.2 11 0.00038 32.3 1.3 29 513-544 2-30 (103)
288 2han_A Protein ultraspiracle; 37.5 13 0.00046 31.1 1.7 31 511-544 9-39 (93)
289 3i2w_A Syndapin, LD46328P; EFC 36.7 3.4E+02 0.012 27.2 16.3 24 115-138 134-157 (290)
290 2j1d_G DAAM1, disheveled-assoc 36.6 4.6E+02 0.016 28.8 14.7 35 9-43 172-212 (483)
291 4a3a_A Amphiphysin; structural 36.3 3.3E+02 0.011 26.9 19.6 92 111-212 115-213 (243)
292 3swf_A CGMP-gated cation chann 34.9 1.2E+02 0.0041 24.0 6.6 43 207-249 7-49 (74)
293 1ynw_B Retinoic acid receptor 34.8 13 0.00044 31.6 1.2 29 513-544 4-32 (99)
294 2a66_A Orphan nuclear receptor 34.8 13 0.00044 32.5 1.3 32 510-544 7-38 (113)
295 1a6y_A Orphan nuclear receptor 33.4 16 0.00056 30.7 1.6 30 512-544 7-36 (94)
296 1lo1_A Steroid hormone recepto 32.4 12 0.00042 31.7 0.7 30 512-544 4-33 (98)
297 1d4u_A Nucleotide excision rep 32.4 11 0.00037 32.7 0.4 31 511-541 4-35 (111)
298 1dsz_A RAR-alpha, retinoic aci 32.1 18 0.0006 29.9 1.6 29 513-544 5-33 (86)
299 1cit_A NGFI-B, protein (orphan 31.8 21 0.00072 29.7 2.0 28 514-544 2-29 (89)
300 3ajm_A Programmed cell death p 31.6 3.6E+02 0.012 25.9 14.6 59 79-141 118-176 (213)
301 1dl6_A Transcription factor II 31.4 25 0.00087 26.5 2.3 26 513-539 12-37 (58)
302 1dsz_B RXR-alpha, retinoic aci 31.4 12 0.00041 30.9 0.4 31 511-544 4-34 (85)
303 1kb2_A Vitamin D3 receptor; VD 31.2 15 0.0005 31.9 1.0 29 513-544 7-35 (110)
304 1oxz_A ADP-ribosylation factor 30.6 3.2E+02 0.011 25.8 10.3 83 137-220 36-127 (186)
305 3vkg_A Dynein heavy chain, cyt 29.5 1.3E+03 0.045 31.9 24.3 63 76-138 1895-1963(3245)
306 3obv_E Protein diaphanous homo 29.2 4.1E+02 0.014 29.0 12.6 36 8-43 160-201 (457)
307 4glq_A Methyl-accepting chemot 28.9 34 0.0012 31.9 3.3 41 530-588 119-159 (171)
308 2kgo_A Uncharacterized protein 28.5 6 0.00021 34.1 -1.9 34 511-544 55-89 (108)
309 3cbb_A HNF-4-alpha, hepatocyte 27.2 19 0.00066 29.0 1.0 28 514-544 2-29 (78)
310 2p22_C Protein SRN2; endosome, 26.8 3.5E+02 0.012 25.7 9.9 54 76-133 128-182 (192)
311 1naf_A ADP-ribosylation factor 26.2 2.7E+02 0.0093 25.5 8.7 83 137-220 20-111 (158)
312 2xi5_A RNA polymerase L, L-pro 24.7 1.2E+02 0.0041 28.1 5.8 60 130-195 5-64 (184)
313 3mq9_A Bone marrow stromal ant 24.1 7E+02 0.024 26.8 14.3 25 226-250 444-468 (471)
314 3ulb_A Target of rapamycin com 23.2 1.4E+02 0.0047 26.1 5.6 36 394-429 74-115 (121)
315 3lay_A Zinc resistance-associa 23.0 4.4E+02 0.015 24.6 9.7 34 145-178 109-142 (175)
316 3aco_A Pacsin2, protein kinase 22.8 6.4E+02 0.022 26.0 16.0 26 157-182 221-246 (350)
317 4hpq_C ATG17, KLTH0D15642P; au 22.4 7.4E+02 0.025 26.5 26.7 28 76-103 194-221 (413)
318 4hn5_A Glucocorticoid receptor 21.8 36 0.0012 29.8 1.8 30 511-543 28-57 (117)
319 1v9d_A Diaphanous protein homo 21.5 5.2E+02 0.018 26.8 11.2 35 9-43 90-130 (340)
320 3j21_d 50S ribosomal protein L 21.3 27 0.00092 28.9 0.8 33 506-539 27-76 (89)
321 3dzy_D Peroxisome proliferator 20.7 35 0.0012 37.2 1.8 31 511-544 49-79 (419)
No 1
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=100.00 E-value=3e-57 Score=505.18 Aligned_cols=360 Identities=23% Similarity=0.359 Sum_probs=298.2
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC-----CCCCCccccCchHH
Q 003309 4 NKLDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG-----HNDPISVAFGGPVM 78 (832)
Q Consensus 4 ~~l~DSP~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~-----~~~~~~~~~~~~~l 78 (832)
+|+.|||.||++|+.+|++++.+++||++++|.|+.++++...++.+...|+++|.+|+.. .+|+. .+.+|
T Consensus 11 e~~~DSP~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~----v~~~l 86 (385)
T 2q13_A 11 ETLEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEV----MSSTL 86 (385)
T ss_dssp GTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCH----HHHHH
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHH----HHHHH
Confidence 7999999999999999999999999999999999999999778888899999999998752 23332 23689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHH-hHHHHH
Q 003309 79 TKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVA-AILEEE 157 (832)
Q Consensus 79 ~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~-~e~~~~ 157 (832)
.+|+++++++..++..|+.+++..++.||++|+++||+++++.||+||+++.+||++++||++++|+++++.. .|++++
T Consensus 87 ~~f~~~~~ei~~~~~~l~~~~~~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~k~~~~~k~k~~e~~~~ea~~~ 166 (385)
T 2q13_A 87 QQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTED 166 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887654 677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 158 LHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELL-HQMEPYINQVLTYAQQSRERSNYEQAA 236 (832)
Q Consensus 158 l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~-~~l~~~~~~l~~~~~~~r~~~~~~~~~ 236 (832)
|+++|+.|++++|||+..|++++.++++++|+.|+.||++|.+||++|++++ ++++||++++...+++.|.+++.+.+.
T Consensus 167 l~~~rk~f~~~~ldy~~~l~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~~~~~~~~~~~l~~~l~~~r~~~~~~~~~ 246 (385)
T 2q13_A 167 VYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIET 246 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 599999999999999999999998888
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCCCCCCCCcccccccCcchhhHHHHHhhccCCcceeEEEEEEecCCC--CCCCCceeE
Q 003309 237 LNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSN--LRGDWKRRF 314 (832)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~G~L~K~~~~--~~~~WkrRw 314 (832)
+.+.+.++..... .+.. |..+. + ........++|+|||+|+++. .++.|+|||
T Consensus 247 ~~~~~~~l~~~~~----~~~~-----~~~~~--------~--------~~~~~~~~~~k~G~L~K~~~~~~~~~~WkkRw 301 (385)
T 2q13_A 247 MQQTIEDLEVASD----PLYV-----PDPDP--------T--------KFPVNRNLTRKAGYLNARNKTGLVSSTWDRQF 301 (385)
T ss_dssp HHHHHHHHHHHHG----GGSS-----SSCCT--------T--------TSCCCCCCSCCEEEEEEC--------CCEEEE
T ss_pred HHHHHHHHhccCC----CCCC-----CCCcc--------c--------ccccCCCCccEEEEEEEecCCCCCcCCceeEE
Confidence 7777665442111 1110 11000 0 001112467899999999765 345799999
Q ss_pred EEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccccccccccccccccCCcccCCc
Q 003309 315 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLR 394 (832)
Q Consensus 315 fvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~r~ 394 (832)
|||+ ++.|+||++.... +.+.|+|..|+|+.. +..+|+
T Consensus 302 fvL~-~~~L~y~k~~~~~----------------------------------------~~~~i~l~~~~v~~~-~~~~r~ 339 (385)
T 2q13_A 302 YFTQ-GGNLMSQARGDVA----------------------------------------GGLAMDIDNCSVMAV-DCEDRR 339 (385)
T ss_dssp EEEE-TTEEEEECSSCSS----------------------------------------CEEEEECTTCEEEEE-CCTTCS
T ss_pred EEEE-CCEEEEecCCCcC----------------------------------------CCceEEccceEEEec-cccCCC
Confidence 9999 5677777763210 124578888888753 446889
Q ss_pred ceEEEecCC--ceEEEEeCCHHHHHHHHHHHHHHHHHHHccC
Q 003309 395 FCFRIISPT--KNYTLQAESALDQMDWIEKITGVIASLLSSQ 434 (832)
Q Consensus 395 ~~F~I~t~~--rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~ 434 (832)
|||+|++|+ |+|+|||+|++||++||.||+.+|..++...
T Consensus 340 ~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~~~~~~ 381 (385)
T 2q13_A 340 YCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQIYLSE 381 (385)
T ss_dssp SEEEEECTTSCBCCCEECSSHHHHHHHHHHHHHHHTTCC---
T ss_pred ceEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999 9999999999999999999999987665443
No 2
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-56 Score=504.40 Aligned_cols=365 Identities=20% Similarity=0.291 Sum_probs=299.5
Q ss_pred CcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCcc-ccCchHHHHH
Q 003309 3 FNKLDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISV-AFGGPVMTKF 81 (832)
Q Consensus 3 ~~~l~DSP~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~-~~~~~~l~~f 81 (832)
=+|+.|||.||++|++||++++.+++||++++|.|++++++...++.+...|+..|..|.......... .....+|.+|
T Consensus 33 ~Ea~~DSP~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f 112 (407)
T 4h8s_A 33 EEALQDSPQTRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYF 112 (407)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC----CHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHH
Confidence 489999999999999999999999999999999999999998888888899999998876422111100 0123579999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHH-hHHHHHHHH
Q 003309 82 TIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVA-AILEEELHS 160 (832)
Q Consensus 82 ~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~-~e~~~~l~~ 160 (832)
+..++++..++..|+.+++..++.||++|+++||+++++.||+||+++.+||++++||++++|+++++.+ .|++.+|++
T Consensus 113 ~~~~~ei~~~~~~L~~~~~~~i~~pL~~f~k~di~~~ke~kK~Fek~~~~Yd~~l~Ky~~~~k~k~~~~~~~e~~~~l~~ 192 (407)
T 4h8s_A 113 SKVVDELNLLHTELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLSMAKYSRLPKKKENEKVKTEVGKEVAA 192 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988776 477889999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 161 ARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELL-HQMEPYINQVLTYAQQSRERSNYEQAALNE 239 (832)
Q Consensus 161 ~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~-~~l~~~~~~l~~~~~~~r~~~~~~~~~l~~ 239 (832)
+|+.|+++++||+..|++++.++++++|+.+++|++++.+||++|++++ ++++||++.+...+++.+...+.+++.+..
T Consensus 193 ~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 272 (407)
T 4h8s_A 193 ARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMFSKRMDSFLSSVADMVQSIQVELEAEAEKMRV 272 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 679999999999999999888877776665
Q ss_pred HHHHHHhhhhhhhcccCCCCCCCCCCCcccccccCcchhhHHHHHhhccCCcceeEEEEEEecCC--CCCCCCceeEEEE
Q 003309 240 RMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSS--NLRGDWKRRFFVL 317 (832)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~G~L~K~~~--~~~~~WkrRwfvL 317 (832)
.+.++...... ...|..+.. ........+.|+|||+||++ ..+++|+||||||
T Consensus 273 ~~~~~~~~~~~---------~~~~~~~~~----------------~~~~~~~~~~k~G~L~k~~~~g~~~~~W~rrwfvl 327 (407)
T 4h8s_A 273 SQQELLSVDES---------VYTPDSDVA----------------APQINRNLIQKAGYLNLRNKTGLVTTTWERLYFFT 327 (407)
T ss_dssp HHHHHHCSCTT---------TTCTTSCSS----------------SCCCCCSCSCCEEEEEEEEECSSSCEEEEEEEEEE
T ss_pred HHHhhhccccc---------ccCCCCCcc----------------cccccCCcceeeceeeeeccCCCCCCCceEEEEEE
Confidence 55443221111 011111110 01122346789999999853 3457899999999
Q ss_pred eCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccccccccccccccccccCCcccCCcceE
Q 003309 318 DSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCF 397 (832)
Q Consensus 318 ~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F 397 (832)
+ ++.|+||+.....+ ...|+|..|+|++ .+..+|+|||
T Consensus 328 ~-~~~l~y~~~~~~~~----------------------------------------~~~~~l~~~~v~~-~~~~~r~~cF 365 (407)
T 4h8s_A 328 Q-GGNLMCQPRGAVAG----------------------------------------GLIQDLDNCSVMA-VDCEDRRYCF 365 (407)
T ss_dssp C-SSCEECCCTTCSSC----------------------------------------CCCBCSSCCEEEE-ECCTTCSSEE
T ss_pred E-CCEEEEEeCCCCCC----------------------------------------CeEEECCceEEEE-CCCCCCCceE
Confidence 9 68888887643321 1236678898876 4556899999
Q ss_pred EEecCC--ceEEEEeCCHHHHHHHHHHHHHHHHHHHccC
Q 003309 398 RIISPT--KNYTLQAESALDQMDWIEKITGVIASLLSSQ 434 (832)
Q Consensus 398 ~I~t~~--rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~ 434 (832)
+|++|+ ++|+|||+|++||++||.||+.+|..++...
T Consensus 366 ~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~~~~~ 404 (407)
T 4h8s_A 366 QITTPNGKSGIILQAESRKENEEWICAINNISRQIYLTD 404 (407)
T ss_dssp EEECTTSSCCEEEECSSSHHHHHHHHHHHHHHSCC----
T ss_pred EEEecCCCceEEEEcCCHHHHHHHHHHHHHHHHHhhccc
Confidence 999986 6899999999999999999999998776543
No 3
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=1.7e-53 Score=470.36 Aligned_cols=289 Identities=33% Similarity=0.494 Sum_probs=215.9
Q ss_pred ccccccccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHh
Q 003309 494 RSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSL 573 (832)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~ 573 (832)
+...+.+++++.|++.|+|..|||||+++|+|+|+|||||+|++||||||+||+|||+||||+|| .|+++++++|+.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d--~w~~~~~~~~~~~ 104 (368)
T 3jue_A 27 REPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPELVKLMCEL 104 (368)
T ss_dssp -----CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCHHHHHHHHHS
T ss_pred hhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecc--cccHHHHHHHHHH
Confidence 34455789999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred chHHHHHHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCCCCCccccc----
Q 003309 574 GNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHS---- 649 (832)
Q Consensus 574 gn~~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~~~~~~~~~---- 649 (832)
||..+|.+||+.+++. ...||.|.++...|++||+.||++++|+...........
T Consensus 105 gn~~~n~~~e~~~~~~---------------------~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~~~~~~~~~~~~ 163 (368)
T 3jue_A 105 GNVIINQIYEARVEAM---------------------AVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGR 163 (368)
T ss_dssp CHHHHHHHHTTTTTTT---------------------TCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC-----------
T ss_pred ccHHHHHHHHhhcccc---------------------cCcCCCCCCCHHHHHHHHHHHHHhhcccccchhhhhccccccC
Confidence 9999999999999862 146999999999999999999999999987653211000
Q ss_pred -ccceeeh-hhhcCchhhhHhhh-hccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccc
Q 003309 650 -VAHQIWE-GVRTNDKKAVYRHI-VNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNL 726 (832)
Q Consensus 650 -~~~~L~~-Av~~~d~~~v~~lL-~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll 726 (832)
..+.... .....+........ .....+++...+. ++++.|+.. .+.......|
T Consensus 164 ~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------t~L~~Aa~~-~g~~~~v~~L 219 (368)
T 3jue_A 164 PRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPG-----------------------ALLFRASGH-PPSLPTMADA 219 (368)
T ss_dssp ---------------------------------CCHH-----------------------HHHHHHTSS-SCCHHHHHHH
T ss_pred cccCCCCCCCcccCCCCccccccccccccccccCCCC-----------------------cHHHHHHHc-cCCHHHHHHH
Confidence 0000000 00000000000000 0011122111110 122222222 0223333334
Q ss_pred cCCCCCCCcCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 003309 727 AGTSEGQTMDD--LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNR 804 (832)
Q Consensus 727 ~~~~~~~~~~d--~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~ 804 (832)
+..|++++..+ ..|.||||+||..|+.+++++||++|+++|..|..|+||||+|+..|+.++|++||++|++++.+|.
T Consensus 220 L~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~ 299 (368)
T 3jue_A 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299 (368)
T ss_dssp HHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCC
Confidence 45566666666 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 805 EGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 805 ~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
+|.||||+|+..|+ .+++++|+.++
T Consensus 300 ~G~TpL~~A~~~g~--~~iv~lLl~~~ 324 (368)
T 3jue_A 300 EGRDPLTIAMETAN--ADIVTLLRLAK 324 (368)
T ss_dssp TSCCHHHHHHHTTC--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCC--HHHHHHHHHcC
Confidence 99999999999999 99999998754
No 4
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=100.00 E-value=5.1e-51 Score=435.40 Aligned_cols=256 Identities=35% Similarity=0.562 Sum_probs=230.4
Q ss_pred cccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHH
Q 003309 499 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA 578 (832)
Q Consensus 499 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~ 578 (832)
.++.++.|++.|||..|||||+++|+|+|+|||+++|++||||||+||+|||+||||+|| .|.++++.+|..+||..+
T Consensus 4 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d--~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 4 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLD--VLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCGGGGHHHHHSCHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecC--CCCHHHHHHHHHcCcHHH
Confidence 356788999999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCCCCCcccccccceeehhh
Q 003309 579 NSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGV 658 (832)
Q Consensus 579 n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~~~~~~~~~~~~~L~~Av 658 (832)
|.+||+.++... ..||.|.+....+++||+.||..+.|........ ......|+.|+
T Consensus 82 n~i~e~~l~~~~---------------------~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~--~~~l~~l~~a~ 138 (278)
T 1dcq_A 82 NEIMECCLPSED---------------------PVKPNPGSDMIARKDYITAKYMERRYARKKHADT--AAKLHSLCEAV 138 (278)
T ss_dssp HHHHTTTCCSSS---------------------CCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSH--HHHHHHHHHHH
T ss_pred HHHHHhhCChhh---------------------cCCCCCCCCHHHHHHHHHHHHHHhhccccccccc--chhhhhhhhHh
Confidence 999999887621 3589999999999999999999999988765543 33456799999
Q ss_pred hcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCCCCCcCCC
Q 003309 659 RTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDL 738 (832)
Q Consensus 659 ~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~ 738 (832)
..+|...+..++ ..|++++... .++..|.
T Consensus 139 ~~~d~~~~~~ll-~~g~~~~~~~--------------------------------------------------~l~~~~~ 167 (278)
T 1dcq_A 139 KTRDIFGLLQAY-ADGVDLTEKI--------------------------------------------------PLANGHE 167 (278)
T ss_dssp HTTCHHHHHHHH-HTTCCTTSBC--------------------------------------------------CCSSCSS
T ss_pred hhcccHHHHHHH-Hhhcchhhhc--------------------------------------------------ccccccc
Confidence 999999887766 7788876421 0223456
Q ss_pred CCCcHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 003309 739 EGCTLLHLACDS---ADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 815 (832)
Q Consensus 739 ~g~TpLh~Aa~~---g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~ 815 (832)
.|.||||+|+.. |+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+.
T Consensus 168 ~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~ 247 (278)
T 1dcq_A 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 247 (278)
T ss_dssp TTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Confidence 799999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHhhCCC
Q 003309 816 SNFADSEVLAILSDSHG 832 (832)
Q Consensus 816 ~g~~d~~iv~lLl~~gg 832 (832)
.|+ .+++++|+++|+
T Consensus 248 ~~~--~~~v~~Ll~~ga 262 (278)
T 1dcq_A 248 LKH--EHCEELLTQALS 262 (278)
T ss_dssp TTC--HHHHHHHHHHHT
T ss_pred cCC--HHHHHHHHHcCC
Confidence 999 999999998764
No 5
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.2e-50 Score=434.15 Aligned_cols=251 Identities=33% Similarity=0.536 Sum_probs=218.7
Q ss_pred cccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHH
Q 003309 499 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA 578 (832)
Q Consensus 499 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~ 578 (832)
.+++++.|++.|||..|+|||+++|+|+|+|||+|+|++|||+||+||+|+|+|||++|| .|+++++.+|..+||..+
T Consensus 29 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD--~w~~~~l~~~~~~GN~~~ 106 (301)
T 2b0o_E 29 TKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLALNMGNTSF 106 (301)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcC--CCCHHHHHHHHHcCCHHH
Confidence 456778899999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCCCCCcccccccceeehhh
Q 003309 579 NSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGV 658 (832)
Q Consensus 579 n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~~~~~~~~~~~~~L~~Av 658 (832)
|.+||+.++... ..||.+.+....|+.||+.||..+.|..+... ..+.|+.|+
T Consensus 107 n~i~E~~l~~~~---------------------~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~~~~------~~~~L~~A~ 159 (301)
T 2b0o_E 107 NEVMEAQLPSHG---------------------GPKPSAESDMGTRRDYIMAKYVEHRFARRCTP------EPQRLWTAI 159 (301)
T ss_dssp HHHHTTTCCSSS---------------------CSCCCTTCCHHHHHHHHHHHHTSCTTSCCCC-------CHHHHHHHH
T ss_pred HHHHHHhhhhcc---------------------CCCCCCcccHHHHHHHHHHHHHhhhhhcccCc------hHHHHhhhh
Confidence 999999987621 36888888999999999999999999776432 235699999
Q ss_pred hcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCCCCCcCCC
Q 003309 659 RTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDL 738 (832)
Q Consensus 659 ~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~ 738 (832)
..++...|..+| ..|+|+|...... ..+.
T Consensus 160 ~~g~~~~v~~ll-~~g~d~~~~~~~~--------------------------------------------------~~~~ 188 (301)
T 2b0o_E 160 CNRDLLSVLEAF-ANGQDFGQPLPGP--------------------------------------------------DAQA 188 (301)
T ss_dssp HTTCHHHHHHHH-HTTCCTTSCEECS--------------------------------------------------SSCS
T ss_pred hccCHHHHHHHH-hcCCcccccCCCc--------------------------------------------------ccCC
Confidence 999999988776 8899987631100 1356
Q ss_pred CCCcHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 003309 739 EGCTLLHLACDS---ADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 815 (832)
Q Consensus 739 ~g~TpLh~Aa~~---g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~ 815 (832)
.|.||||+|+.. |+.+++++||++|+++|.+|..|+||||+|+..|+.++|++||++|++++.+|..|.||||+|+.
T Consensus 189 ~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~ 268 (301)
T 2b0o_E 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268 (301)
T ss_dssp CEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 788999999887 78899999999999999988889999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHhhCC
Q 003309 816 SNFADSEVLAILSDSH 831 (832)
Q Consensus 816 ~g~~d~~iv~lLl~~g 831 (832)
.|+ .+++++|+++|
T Consensus 269 ~~~--~~iv~~Ll~~g 282 (301)
T 2b0o_E 269 KHH--KECEELLEQAQ 282 (301)
T ss_dssp HTC--HHHHHHHHHHH
T ss_pred cCC--HHHHHHHHHhc
Confidence 888 88999988764
No 6
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=1.4e-50 Score=468.09 Aligned_cols=252 Identities=33% Similarity=0.542 Sum_probs=223.4
Q ss_pred cccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHH
Q 003309 499 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA 578 (832)
Q Consensus 499 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~ 578 (832)
+++.++.+++.|||..|||||+++|+|+|+|+|||+|++||||||+||+||||||||+|| .|+++++.+|+.+||..+
T Consensus 10 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld--~w~~~~~~l~~~~GN~~a 87 (497)
T 3lvq_E 10 TKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLALNMGNTSF 87 (497)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCGGGGTTTTTCCHHHH
T ss_pred HHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccC--CCCHHHHHHHHHHhhHHH
Confidence 456788899999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCCCCCcccccccceeehhh
Q 003309 579 NSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGV 658 (832)
Q Consensus 579 n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~~~~~~~~~~~~~L~~Av 658 (832)
|.+||+.++... ..+|.+.++...++.||+.||+.+.|..+..... +.|+.|+
T Consensus 88 n~i~E~~lp~~~---------------------~~kP~~~s~~~~re~fIraky~~~~f~~~~~~~~------~~L~~A~ 140 (497)
T 3lvq_E 88 NEVMEAQLPSHG---------------------GPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEP------QRLWTAI 140 (497)
T ss_dssp HHHHTTTCCSSS---------------------CSCCCTTCCHHHHHHHHHHHHTTCTTSCCCC-CH------HHHHHHH
T ss_pred HHHHHhhccccc---------------------CCCCCCcCcHHHHHHHHHHHhhcccccccccccH------HHHHHHH
Confidence 999999998621 3688889999999999999999999988765433 6799999
Q ss_pred hcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCCCCCcCCC
Q 003309 659 RTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDL 738 (832)
Q Consensus 659 ~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~ 738 (832)
..|+...|..+| ..|+|+|..... ...|.
T Consensus 141 ~~g~~~~v~~ll-~~g~~~n~~~~~--------------------------------------------------~~~~~ 169 (497)
T 3lvq_E 141 CNRDLLSVLEAF-ANGQDFGQPLPG--------------------------------------------------PDAQA 169 (497)
T ss_dssp HHTCHHHHHHHH-HTTCCSSSCBCC--------------------------------------------------SSSCC
T ss_pred hccCHHHHHHHH-hhcccccCCCCC--------------------------------------------------ccccc
Confidence 999999888776 789999864221 12356
Q ss_pred CCCcHHHHHHH---cCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 003309 739 EGCTLLHLACD---SADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 815 (832)
Q Consensus 739 ~g~TpLh~Aa~---~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~ 815 (832)
.|.||||+||. .|+.+++++||++|+++|.+|..|+||||+|+..|+.++|++||++||+++.+|..|.||||+|+.
T Consensus 170 ~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 249 (497)
T 3lvq_E 170 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249 (497)
T ss_dssp SCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHH
T ss_pred ccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 78999999966 888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHhhCCC
Q 003309 816 SNFADSEVLAILSDSHG 832 (832)
Q Consensus 816 ~g~~d~~iv~lLl~~gg 832 (832)
.|+ .+++++|+++|+
T Consensus 250 ~~~--~~~~~~Ll~~ga 264 (497)
T 3lvq_E 250 KHH--KECEELLEQAQA 264 (497)
T ss_dssp TTC--HHHHHHHHHTCC
T ss_pred cCC--HHHHHHHHHhCC
Confidence 988 889999998875
No 7
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=100.00 E-value=9.2e-40 Score=344.98 Aligned_cols=239 Identities=22% Similarity=0.343 Sum_probs=220.5
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC-----CCCCCccccCchHH
Q 003309 4 NKLDDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG-----HNDPISVAFGGPVM 78 (832)
Q Consensus 4 ~~l~DSP~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~-----~~~~~~~~~~~~~l 78 (832)
+|++|||.||++|+.+|++++.++.||++++|.|+.++++...++.++..|+++|.+|+.. .+|.. .+++|
T Consensus 11 e~~~DSP~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~----~~~~L 86 (265)
T 2q12_A 11 ETLEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEV----MSSTL 86 (265)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CH----HHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHH----HHHHH
Confidence 6899999999999999999999999999999999999999888878899999999998752 23332 24789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchh-HHhHHHHH
Q 003309 79 TKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTD-VAAILEEE 157 (832)
Q Consensus 79 ~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~-~~~e~~~~ 157 (832)
.+|+++++++++++..|+.+++..++.||++|+++||+++++.||+||+.+.+||++++||++++|+++++ .++|++.+
T Consensus 87 ~~f~~~l~ei~~~~~~l~~~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k~~e~~l~Ea~~~ 166 (265)
T 2q12_A 87 QQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTED 166 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998874 45899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 158 LHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLH-QMEPYINQVLTYAQQSRERSNYEQAA 236 (832)
Q Consensus 158 l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~-~l~~~~~~l~~~~~~~r~~~~~~~~~ 236 (832)
|+.+|+.|++++|||+..|++++.++++++|+.|++||++|.+||++|++++. +++||++++..++++.|.+++.+++.
T Consensus 167 l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~~~l~~~r~~~~~~~~~ 246 (265)
T 2q12_A 167 VYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIET 246 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999995 99999999999999999999999988
Q ss_pred HHHHHHHHHh
Q 003309 237 LNERMQEYKR 246 (832)
Q Consensus 237 l~~~~~~~~~ 246 (832)
+.+++.++..
T Consensus 247 ~~~~~~~l~~ 256 (265)
T 2q12_A 247 MQQTIEDLEV 256 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888776553
No 8
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=6.8e-37 Score=280.12 Aligned_cols=120 Identities=38% Similarity=0.725 Sum_probs=108.0
Q ss_pred ccccccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhch
Q 003309 496 CVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGN 575 (832)
Q Consensus 496 ~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn 575 (832)
..++++.+..|++.|+|+.|||||+++|+|+|+|||||+|++||||||+||+|||+||||+|| .|+++++++|+.+||
T Consensus 11 ~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld--~w~~~~l~~m~~~GN 88 (134)
T 2iqj_A 11 VDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTQEQIQCMQEMGN 88 (134)
T ss_dssp --CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeecccc--CCCHHHHHHHHHHch
Confidence 345678899999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCCC
Q 003309 576 AFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPK 642 (832)
Q Consensus 576 ~~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~~ 642 (832)
..+|.+||+.+|+. ..+|.++ ..+++||++||++++|+.+..
T Consensus 89 ~~an~~~e~~lp~~----------------------~~~P~~~---~~~e~fIr~KY~~k~f~~~~~ 130 (134)
T 2iqj_A 89 GKANRLYEAYLPET----------------------FRRPQID---PAVEGFIRDKYEKKKYMDRSL 130 (134)
T ss_dssp HHHHHHHTTTCCSS----------------------CCCCCSH---HHHHHHHHHHHTSCTTCCTTC
T ss_pred HHHHHHHHhcCCcc----------------------CCCCCch---HHHHHHHHHHHhCCeeeCCcc
Confidence 99999999998762 3466543 468999999999999997754
No 9
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=280.24 Aligned_cols=119 Identities=40% Similarity=0.733 Sum_probs=107.7
Q ss_pred cccccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchH
Q 003309 497 VKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNA 576 (832)
Q Consensus 497 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~ 576 (832)
.++++++..|++.|+|+.|||||+++|+|+|+|||||||++||||||+||+|||+||||+|| .|++++|++|+.+||.
T Consensus 14 e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld--~w~~~~l~~m~~~GN~ 91 (141)
T 2crr_A 14 EQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTAEQIQCMQDMGNT 91 (141)
T ss_dssp TCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSS--CCCHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCC--CCCHHHHHHHHHHccH
Confidence 34667888999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCCC
Q 003309 577 FANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPK 642 (832)
Q Consensus 577 ~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~~ 642 (832)
.+|.+||+.+|+. ..+|.++ ..++.||++||++++|+.+..
T Consensus 92 ~an~~~e~~lp~~----------------------~~~P~~~---~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 92 KARLLYEANLPEN----------------------FRRPQTD---QAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp HHHHHGGGSCCTT----------------------CCCCCSH---HHHHHHHHHHHTSCTTCCCGG
T ss_pred HHHHHHHhcCCcc----------------------cCCCCch---HHHHHHHHHHHhcCcccCCCc
Confidence 9999999998862 3466543 468999999999999997643
No 10
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=1.4e-35 Score=273.53 Aligned_cols=121 Identities=26% Similarity=0.556 Sum_probs=107.0
Q ss_pred cccccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchH
Q 003309 497 VKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNA 576 (832)
Q Consensus 497 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~ 576 (832)
.++++.+..|++.|||+.|||||+++|+|+|+|||||||++||||||+||+| |+||||+|| .|+++++++|+.+||.
T Consensus 10 e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld--~w~~~~l~~m~~~GN~ 86 (140)
T 2olm_A 10 EKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMT--TFTQQEIEFLQKHGNE 86 (140)
T ss_dssp HHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTC--CCCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCC--CCCHHHHHHHHHhccH
Confidence 3466788888999999999999999999999999999999999999999997 999999999 7999999999999999
Q ss_pred HHHHHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCCC
Q 003309 577 FANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPK 642 (832)
Q Consensus 577 ~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~~ 642 (832)
.+|.+||+.+++.. ..+|.+.+. ..++.||++||+.+.|+.+..
T Consensus 87 ~an~~~e~~~~~~~---------------------~~~P~~~d~-~~~~~fIr~KYe~k~f~~~~~ 130 (140)
T 2olm_A 87 VCKQIWLGLFDDRS---------------------SAIPDFRDP-QKVKEFLQEKYEKKRWYVPPE 130 (140)
T ss_dssp HHHHHHTTTCCTTT---------------------SCCCCTTCH-HHHHHHHHHHHTSCTTCCCHH
T ss_pred HHHHHHHhhCCccc---------------------CCCCCCCCH-HHHHHHHHHHHcCCeeeCCcc
Confidence 99999999887521 246665544 567789999999999997643
No 11
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=1.8e-31 Score=244.38 Aligned_cols=110 Identities=29% Similarity=0.532 Sum_probs=94.6
Q ss_pred ccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHHH
Q 003309 500 EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFAN 579 (832)
Q Consensus 500 ~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~n 579 (832)
+.+++.|++.|+|+.|+|||+++|+|+|+|||||+|++||||||+||+|||+||||+|| .|+++++++|+.+||..+|
T Consensus 24 ~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD--~w~~~~l~~m~~~GN~~an 101 (138)
T 2owa_A 24 DNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLD--KFTPIQLVRMDIGGNGRAR 101 (138)
T ss_dssp HHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTS--CCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcC--cCCHHHHHHHHhhccHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhh
Q 003309 580 SVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLF 637 (832)
Q Consensus 580 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~f 637 (832)
++||+..+. .| +.+..+.-+.++..+|.++.-
T Consensus 102 ~~~e~~~~~-------------------------~~-~~~~~~kY~s~~a~~Y~~kL~ 133 (138)
T 2owa_A 102 NYFKQVLGV-------------------------NF-SPKTKEYASSICGRQYKQILD 133 (138)
T ss_dssp HHHHHHTCT-------------------------TC-CGGGCHHHHSHHHHHHHHHHH
T ss_pred HHHHHHcCC-------------------------CC-CCCHHHHHhhHHHHHHHHHHH
Confidence 999985432 11 112234556788999987653
No 12
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=1e-30 Score=241.66 Aligned_cols=89 Identities=44% Similarity=0.696 Sum_probs=83.4
Q ss_pred cccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHH
Q 003309 499 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA 578 (832)
Q Consensus 499 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~ 578 (832)
.+++++.|++.|+|+.|+|||+++|+|+|+|||||||++||||||+||+|||+||||+||+ .|++++|+.|+.+||..+
T Consensus 16 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~-~W~~~~l~~m~~~GN~~a 94 (149)
T 2crw_A 16 ILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDS-NWSWFQLRCMQVGGNASA 94 (149)
T ss_dssp HHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCC-CCCHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCC-CCCHHHHHHHHHHhhHHH
Confidence 4577888999999999999999999999999999999999999999999999999999993 299999999999999999
Q ss_pred HHHHHhhhcc
Q 003309 579 NSVWEELLQS 588 (832)
Q Consensus 579 n~~~e~~~~~ 588 (832)
|.+||+...+
T Consensus 95 n~~~e~~~~~ 104 (149)
T 2crw_A 95 SSFFHQHGCS 104 (149)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHhcCCC
Confidence 9999986653
No 13
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.96 E-value=1.6e-30 Score=237.15 Aligned_cols=86 Identities=38% Similarity=0.734 Sum_probs=80.9
Q ss_pred ccccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHH
Q 003309 498 KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAF 577 (832)
Q Consensus 498 ~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~ 577 (832)
++++.++.|++.|+|+.|+|||+++|+|+|+|||||+|++||||||+||+|||+||||+|| .|++++++.|+.+||..
T Consensus 24 ~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD--~W~~~el~~m~~~GN~~ 101 (147)
T 3dwd_A 24 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMKAGGNAK 101 (147)
T ss_dssp HHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC----CCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCcccccccc--CCCHHHHHHHHHHhhHH
Confidence 3567889999999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHHHhh
Q 003309 578 ANSVWEEL 585 (832)
Q Consensus 578 ~n~~~e~~ 585 (832)
+|.+||+.
T Consensus 102 an~~~ea~ 109 (147)
T 3dwd_A 102 FREFLESQ 109 (147)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHhC
Confidence 99999984
No 14
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.96 E-value=2.9e-30 Score=284.91 Aligned_cols=121 Identities=41% Similarity=0.782 Sum_probs=113.5
Q ss_pred cccccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchH
Q 003309 497 VKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNA 576 (832)
Q Consensus 497 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~ 576 (832)
.++++.+..|.+.|||..|||||+++|+|||+|||||+|++||||||+| +|||+||||+|| .|+++++.+|+.+||.
T Consensus 19 ~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld--~w~~~~~~~~~~~gN~ 95 (386)
T 3lju_X 19 KERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLD--AWEEAQVEFMASHGND 95 (386)
T ss_dssp HHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTS--CCCHHHHHHHHHSSHH
T ss_pred hHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-Cccceeeeeccc--CCCHHHHHHHHHhcch
Confidence 4567889999999999999999999999999999999999999999999 999999999999 7999999999999999
Q ss_pred HHHHHHHhhhccccccccCCCCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhhhhhhcCCC
Q 003309 577 FANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPK 642 (832)
Q Consensus 577 ~~n~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~~I~~KY~~k~fv~~~~ 642 (832)
.+|++||+.+|+. ..+|.|+++...|++||++||+++.|+.+..
T Consensus 96 ~~~~~~e~~~~~~----------------------~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 96 AARARFESKVPSF----------------------YYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp HHHHHHTTTCCTT----------------------SCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred HHHHHHhccCCcc----------------------CCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 9999999998762 3689999999999999999999999997764
No 15
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.95 E-value=2e-29 Score=230.43 Aligned_cols=86 Identities=44% Similarity=0.774 Sum_probs=81.1
Q ss_pred cccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHH
Q 003309 499 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA 578 (832)
Q Consensus 499 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~ 578 (832)
.++.++.|++.|+|+.|+|||+++|+|+|+|||||+|++||||||+||+|||+||||+||. .|+++++++|+.+||..+
T Consensus 24 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~-~W~~~~l~~m~~~GN~~a 102 (144)
T 2p57_A 24 IQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS-NWNWFQLRCMQVGGNANA 102 (144)
T ss_dssp HHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCC-CCCHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCC-CCCHHHHHHHHHhCHHHH
Confidence 4567788899999999999999999999999999999999999999999999999999993 399999999999999999
Q ss_pred HHHHHhh
Q 003309 579 NSVWEEL 585 (832)
Q Consensus 579 n~~~e~~ 585 (832)
|.+||..
T Consensus 103 n~~~e~~ 109 (144)
T 2p57_A 103 TAFFRQH 109 (144)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9999975
No 16
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.95 E-value=2.4e-29 Score=232.54 Aligned_cols=88 Identities=40% Similarity=0.767 Sum_probs=81.5
Q ss_pred cccHHHHHHcc-CCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHH
Q 003309 499 SEKPIDVLRRV-CGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAF 577 (832)
Q Consensus 499 ~~~~~~~~~~~-~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~ 577 (832)
.+++++.|++. |||..|+|||+++|+|+|+|||||+|++||||||+||+|||+||||+|| .|+++++++|+.+||..
T Consensus 8 a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD--~Wt~e~l~~m~~~GN~~ 85 (163)
T 3sub_A 8 AVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMD--IFTDEQLKYIDKGGNKK 85 (163)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTC--CCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeecccc--CcCHHHHHHHHhhCHHH
Confidence 34667777765 8999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHhhhcc
Q 003309 578 ANSVWEELLQS 588 (832)
Q Consensus 578 ~n~~~e~~~~~ 588 (832)
+|.+||.....
T Consensus 86 an~~~e~~g~~ 96 (163)
T 3sub_A 86 CQTYLENYGIS 96 (163)
T ss_dssp HHHHHHHTTCT
T ss_pred HHHHHHHcCCc
Confidence 99999986543
No 17
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.94 E-value=2.2e-27 Score=233.02 Aligned_cols=158 Identities=29% Similarity=0.424 Sum_probs=139.7
Q ss_pred cccceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccC
Q 003309 649 SVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG 728 (832)
Q Consensus 649 ~~~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~ 728 (832)
+++++|+.|++.|+.+.|..|| +.|+|||..+..+ .||+++++..+.... ...++.
T Consensus 3 dlg~~L~~Aa~~G~~~~v~~Ll-~~Gadvn~~d~~g---------------------~t~l~~a~~~~~~~~--~~~ll~ 58 (169)
T 4gpm_A 3 ELGKRLIEAAENGNKDRVKDLI-ENGADVNASDSDG---------------------RTPLHHAAENGHKEV--VKLLIS 58 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTS---------------------CCHHHHHHHTTCHHH--HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCC---------------------CCHHHHHHHcCCHHH--HHHHHh
Confidence 4567899999999998776555 8999999877655 567776666555444 445567
Q ss_pred CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCc
Q 003309 729 TSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKT 808 (832)
Q Consensus 729 ~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~T 808 (832)
.|++++.+|.+|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|.+|.|
T Consensus 59 ~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~T 138 (169)
T 4gpm_A 59 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRT 138 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred cccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 809 SLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 809 pL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|||+|+..|+ .+++++|+++||
T Consensus 139 pL~~A~~~g~--~~iv~~Ll~~GA 160 (169)
T 4gpm_A 139 PLDLAREHGN--EEVVKLLEKQGG 160 (169)
T ss_dssp HHHHHHHTTC--HHHHHHHHTC--
T ss_pred HHHHHHHcCC--HHHHHHHHHCCC
Confidence 9999999999 999999999986
No 18
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.89 E-value=3.3e-24 Score=233.22 Aligned_cols=88 Identities=38% Similarity=0.710 Sum_probs=83.6
Q ss_pred ccccHHHHHHccCCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHH
Q 003309 498 KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAF 577 (832)
Q Consensus 498 ~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~ 577 (832)
.+++.++.|++.|||+.|||||+++|+|+|+|||||+|++||||||+||+|||+||||+|| .|+++++..|+.+||..
T Consensus 23 ~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~--~~~~~~~~~~~~~gN~~ 100 (329)
T 3o47_A 23 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMKAGGNAK 100 (329)
T ss_dssp CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSC--CCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeecccc--CCCHHHHHHHHHhCcHH
Confidence 4567889999999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHHHhhhc
Q 003309 578 ANSVWEELLQ 587 (832)
Q Consensus 578 ~n~~~e~~~~ 587 (832)
+|.+||....
T Consensus 101 ~n~~~e~~~~ 110 (329)
T 3o47_A 101 FREFLESQED 110 (329)
T ss_dssp HHHHHHTCSS
T ss_pred HHHHHHhcCC
Confidence 9999998643
No 19
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.88 E-value=7e-23 Score=198.68 Aligned_cols=157 Identities=20% Similarity=0.252 Sum_probs=137.6
Q ss_pred cccceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccC
Q 003309 649 SVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG 728 (832)
Q Consensus 649 ~~~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~ 728 (832)
++...|+.|+..|+.+.|..+| +.|+++|..+..+ .+++++++. +......+|+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g---------------------~t~L~~A~~---~~~~~v~~Ll~ 58 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLL-QNNVNVNAQNGFG---------------------RTALQVMKL---GNPEIARRLLL 58 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHT-TSCCCTTCCCTTS---------------------CCHHHHCCS---SCHHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHH-hCCCCccccCccC---------------------ccHHHHHHc---CcHHHHHHHHH
Confidence 4557799999999998876666 8899998865544 677777655 44445555667
Q ss_pred CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCC
Q 003309 729 TSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD-PRAVNREGK 807 (832)
Q Consensus 729 ~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~~~~g~ 807 (832)
.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.
T Consensus 59 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~ 138 (162)
T 1ihb_A 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD 138 (162)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSC
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999998 599999999
Q ss_pred cHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 808 TSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 808 TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
||||+|+..|+ .+++++|+++|+
T Consensus 139 t~l~~A~~~~~--~~~~~~Ll~~GA 161 (162)
T 1ihb_A 139 TACDLARLYGR--NEVVSLMQANGA 161 (162)
T ss_dssp CHHHHHHHTTC--HHHHHHHHHTC-
T ss_pred cHHHHHHHcCC--HHHHHHHHHhCC
Confidence 99999999999 999999999986
No 20
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.87 E-value=7.4e-22 Score=193.33 Aligned_cols=155 Identities=26% Similarity=0.329 Sum_probs=135.6
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCC
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS 730 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~ 730 (832)
...|+.|+..|+.+.|..+ ++.|+|+|..+..+ .+++++++..++. .....|+..|
T Consensus 15 ~~~l~~A~~~g~~~~v~~L-l~~g~~~~~~~~~g---------------------~t~L~~A~~~~~~--~~v~~Ll~~g 70 (169)
T 2y1l_E 15 GKKLLEAARAGRDDEVRIL-MANGADVNAEDASG---------------------WTPLHLAAFNGHL--EIVEVLLKNG 70 (169)
T ss_dssp HHHHHHHHHHTCHHHHHHH-HHTTCCTTCCCTTS---------------------CCHHHHHHHTTCH--HHHHHHHHTT
T ss_pred cchHHHHHHcCCHHHHHHH-HHCCCCCCCCCCCC---------------------CCHHHHHHHcCCH--HHHHHHHHcC
Confidence 3568899999999877555 58899999866544 5677776665543 3445566778
Q ss_pred CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 003309 731 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL 810 (832)
Q Consensus 731 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL 810 (832)
++++..|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 71 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l 150 (169)
T 2y1l_E 71 ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150 (169)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHhhCC
Q 003309 811 ELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 811 ~~A~~~g~~d~~iv~lLl~~g 831 (832)
++|+..|+ .+++++|++.|
T Consensus 151 ~~A~~~~~--~~~~~~L~~~G 169 (169)
T 2y1l_E 151 DISIDNGN--EDLAEILQKLN 169 (169)
T ss_dssp HHHHHTTC--HHHHHHHHTC-
T ss_pred HHHHHhCC--HHHHHHHHHcC
Confidence 99999999 99999999976
No 21
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.85 E-value=2.5e-21 Score=186.56 Aligned_cols=152 Identities=20% Similarity=0.303 Sum_probs=133.7
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
..|+.|+..|+.+.+..+|...+.++|..+..+ .+++++ +..++ ......|+..|+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g---------------------~t~L~~-~~~~~--~~~v~~Ll~~g~ 59 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFG---------------------KTALQV-MMFGS--TAIALELLKQGA 59 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTS---------------------CCHHHH-SCTTC--HHHHHHHHHTTC
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCC---------------------CcHHHH-HHcCC--HHHHHHHHHCCC
Confidence 468899999999999888866566888765543 677777 44433 334455667799
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE 811 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~ 811 (832)
+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++.+|..|.||||
T Consensus 60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~ 138 (156)
T 1bd8_A 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLE 138 (156)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHH
T ss_pred CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHcCCCcHHHHHHHhhC
Q 003309 812 LAVESNFADSEVLAILSDS 830 (832)
Q Consensus 812 ~A~~~g~~d~~iv~lLl~~ 830 (832)
+|+..|+ .+++++|+++
T Consensus 139 ~A~~~~~--~~~v~~Ll~~ 155 (156)
T 1bd8_A 139 LALQRGA--QDLVDILQGH 155 (156)
T ss_dssp HHHHSCC--HHHHHHHHTT
T ss_pred HHHHcCc--HHHHHHHHhh
Confidence 9999999 9999999985
No 22
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=207.46 Aligned_cols=164 Identities=22% Similarity=0.299 Sum_probs=99.9
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhh-------hhhhhHHHHHhhhhcc-----ccCCCCcccccccccCcc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVS-------CISSLTLAKAMLLNEQ-----TSLERSSSSLTGNSSDRS 719 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~-------~~~~l~~~~~ll~~~~-----~~~~~~~~~l~~~~~~~~ 719 (832)
..|+.|+..++...++++|+..|+|||..+..+. ..++..+++.|+.... +..+.+++++++......
T Consensus 54 t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~ 133 (269)
T 4b93_B 54 HPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ 133 (269)
T ss_dssp ---------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred CHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHH
Confidence 3467777777777777777888999988776652 2334455555554322 223455555555444433
Q ss_pred ccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 003309 720 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 799 (832)
Q Consensus 720 ~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 799 (832)
+..+|+..|++++.+|..|+||||+||..|+.++|++||++|+++|.+|..|+||||+|+..|+.++|++||++|+|+
T Consensus 134 --~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~ 211 (269)
T 4b93_B 134 --VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV 211 (269)
T ss_dssp --HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred --HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 334455667777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCCCcHHHHHHHcC
Q 003309 800 RAVNREGKTSLELAVESN 817 (832)
Q Consensus 800 ~~~~~~g~TpL~~A~~~g 817 (832)
+.+|.+|.||||+|+.++
T Consensus 212 ~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 212 QVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp CCCCTTSCCSGGGSCTTC
T ss_pred CCcCCCCCCHHHHHHhCC
Confidence 888888888888877654
No 23
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.85 E-value=3e-21 Score=194.11 Aligned_cols=177 Identities=21% Similarity=0.275 Sum_probs=140.0
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhcc-----ccCCCCcccccccccCcc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQ-----TSLERSSSSLTGNSSDRS 719 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~-----~~~~~~~~~l~~~~~~~~ 719 (832)
..|+.|+..++...|..+|...+.++|..+..+ ...+++.+++.|+..+. +..+.+++++++..++..
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 7 GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp THHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred cHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 346667777777766666655555666655443 22344455555554322 234567777776665444
Q ss_pred ccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHcCC-----HHHHHHHH
Q 003309 720 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYG-ANINATDSRGLTPLHRCILRGK-----AMFAKLLL 793 (832)
Q Consensus 720 ~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~g-advn~~d~~g~TpLh~A~~~g~-----~~~v~~Ll 793 (832)
. +..++...+++++..|..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..+. .+++++|+
T Consensus 87 ~-~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll 165 (201)
T 3hra_A 87 I-LAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165 (201)
T ss_dssp H-HHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHH
T ss_pred H-HHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHH
Confidence 3 333444678899999999999999999999999999999999 9999999999999999999998 99999999
Q ss_pred hCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 794 TRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 794 ~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
++|++++.+|..|.||||+|+..|+ .+++++|+++|
T Consensus 166 ~~ga~~~~~~~~g~t~l~~A~~~~~--~~~~~~Ll~~G 201 (201)
T 3hra_A 166 ENGADQSIKDNSGRTAMDYANQKGY--TEISKILAQYN 201 (201)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHHTC--HHHHHHHHTCC
T ss_pred HCCCCCCccCCCCCCHHHHHHHcCC--HhHHHHHHhcC
Confidence 9999999999999999999999999 99999999976
No 24
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.85 E-value=9.7e-22 Score=191.44 Aligned_cols=156 Identities=26% Similarity=0.373 Sum_probs=134.2
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCC
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS 730 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~ 730 (832)
...|+.|+..|+.+.|..+|...+.+++..+.. +.+++++++..++. .....|+..+
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~---------------------g~t~L~~A~~~~~~--~~v~~Ll~~g 65 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGR---------------------QSTPLHFAAGYNRV--SVVEYLLQHG 65 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTT---------------------CCCHHHHHHHTTCH--HHHHHHHHTT
T ss_pred hHHHHHHHHhCCHHHHHHHHHcCCCCccccccC---------------------CCCHHHHHHHcChH--HHHHHHHhcC
Confidence 457899999999999988886566677654443 35677776665543 4445566779
Q ss_pred CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 003309 731 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL 810 (832)
Q Consensus 731 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL 810 (832)
++++..|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 145 (165)
T 3twr_A 66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145 (165)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTG
T ss_pred CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHhhCCC
Q 003309 811 ELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 811 ~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|+|+. |+ .+++++|+++|+
T Consensus 146 ~~a~~-~~--~~i~~~L~~~gA 164 (165)
T 3twr_A 146 DLVKD-GD--TDIQDLLRGDAA 164 (165)
T ss_dssp GGSCT-TC--HHHHHHHHTC--
T ss_pred HhHhc-CC--hHHHHHHhhccc
Confidence 99877 77 899999999875
No 25
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.85 E-value=2.3e-21 Score=199.80 Aligned_cols=176 Identities=20% Similarity=0.172 Sum_probs=146.8
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhccc----------cCCCCccccccc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQT----------SLERSSSSLTGN 714 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~----------~~~~~~~~l~~~ 714 (832)
..|+.|+..|+...|..+|...|+|+|..+..+ ...++..+++.|+..... ..+.+++++++.
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~ 84 (232)
T 2rfa_A 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVI 84 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHH
Confidence 458889999998888777755599999877664 334566777777764433 256788888777
Q ss_pred ccCccccccccccCCCCCCCcCCC-------------CCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Q 003309 715 SSDRSSSGSLNLAGTSEGQTMDDL-------------EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCI 781 (832)
Q Consensus 715 ~~~~~~~~~lll~~~~~~~~~~d~-------------~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~ 781 (832)
.++.. ...+|+..|++++..+. .|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+
T Consensus 85 ~~~~~--~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~ 162 (232)
T 2rfa_A 85 NQNVN--LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI 162 (232)
T ss_dssp TTCHH--HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cCCHH--HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 66544 44455667888887765 7999999999999999999999999999999999999999999
Q ss_pred HcCCHHHH----HHHHhCCCCC------CCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 782 LRGKAMFA----KLLLTRGADP------RAVNREGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 782 ~~g~~~~v----~~Ll~~gad~------~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
..|+.+++ ++|+++|+++ +.+|..|.||||+|+..|+ .+++++|+++|
T Consensus 163 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~--~~~v~~Ll~~g 220 (232)
T 2rfa_A 163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN--IVMFQHLMQKR 220 (232)
T ss_dssp TCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC--HHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC--HHHHHHHHhcC
Confidence 99999988 9999999998 5889999999999999999 99999999876
No 26
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.85 E-value=2.7e-21 Score=185.97 Aligned_cols=150 Identities=21% Similarity=0.267 Sum_probs=131.0
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCC
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS 730 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~ 730 (832)
.+.|+.|+..|+.+.|..+| +.|++++. +. .+.+++++++..++.. ....|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll-~~g~~~~~-~~---------------------~g~t~L~~A~~~~~~~--~v~~Ll~~g 57 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILM-ANGAPFTT-DW---------------------LGTSPLHLAAQYGHFS--TTEVLLRAG 57 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHH-HHTCCCCC-CT---------------------TCCCHHHHHHHHTCHH--HHHHHHTTT
T ss_pred cHHHHHHHHcCCHHHHHHHH-HcCCCCCc-CC---------------------CCCCHHHHHHHcCCHH--HHHHHHHcC
Confidence 45689999999988776555 78888763 22 2456777776665443 444566789
Q ss_pred CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 003309 731 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL 810 (832)
Q Consensus 731 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL 810 (832)
++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 58 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 137 (153)
T 1awc_B 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 137 (153)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHH
Q 003309 811 ELAVESNFADSEVLAIL 827 (832)
Q Consensus 811 ~~A~~~g~~d~~iv~lL 827 (832)
|+|+..|+ .+++++|
T Consensus 138 ~~A~~~~~--~~i~~~L 152 (153)
T 1awc_B 138 DISIDNGN--EDLAEIL 152 (153)
T ss_dssp HHHHHTTC--HHHHHHH
T ss_pred HHHHHcCC--HHHHHHh
Confidence 99999999 9999988
No 27
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.85 E-value=2.5e-21 Score=188.86 Aligned_cols=154 Identities=20% Similarity=0.238 Sum_probs=135.6
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
..|+.|+..|+...|..+| +.|+++|..+..+ .+++++++..++.. ....|+..|+
T Consensus 5 t~L~~A~~~g~~~~v~~ll-~~~~~~~~~~~~g---------------------~t~L~~A~~~~~~~--~v~~Ll~~g~ 60 (167)
T 3v31_A 5 LSVHQLAAQGEMLYLATRI-EQENVINHTDEEG---------------------FTPLMWAAAHGQIA--VVEFLLQNGA 60 (167)
T ss_dssp CCHHHHHHTTCHHHHHHHH-HHSSCTTCCCTTS---------------------CCHHHHHHHTTCHH--HHHHHHHTTC
T ss_pred chHHHHHHCCCHHHHHHHH-HcCCCcCCCCCCC---------------------CCHHHHHHHCCCHH--HHHHHHHcCC
Confidence 4688999999988776665 7799998866544 57777776665543 4445666799
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE 811 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~ 811 (832)
+++..|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 61 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~ 140 (167)
T 3v31_A 61 DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMD 140 (167)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHhhCC
Q 003309 812 LAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 812 ~A~~~g~~d~~iv~lLl~~g 831 (832)
+|+..|+ .+++++|++++
T Consensus 141 ~A~~~~~--~~~~~~L~~~~ 158 (167)
T 3v31_A 141 LAVALGY--RSVQQVIESHL 158 (167)
T ss_dssp HHHHHTC--HHHHHHHHHHH
T ss_pred HHHHcCc--HHHHHHHHHHH
Confidence 9999999 99999999754
No 28
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.85 E-value=7.1e-21 Score=194.70 Aligned_cols=176 Identities=17% Similarity=0.163 Sum_probs=147.8
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhcc------ccCCCCcccccccccCc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQ------TSLERSSSSLTGNSSDR 718 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~------~~~~~~~~~l~~~~~~~ 718 (832)
..|+.|+..++.+.|. +|++.|+++|..+..+ ...++..+++.++.... +..+.+++++++..+..
T Consensus 27 t~L~~A~~~g~~~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 105 (223)
T 2f8y_A 27 TALHLAARYSRSDAAK-RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 105 (223)
T ss_dssp CHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCH
T ss_pred chHHHHHHcCCHHHHH-HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcH
Confidence 4578888888877554 5558899999876654 23455677777765433 34567788777766554
Q ss_pred cccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 003309 719 SSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 798 (832)
Q Consensus 719 ~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 798 (832)
. ....|+..+++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 106 ~--~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 183 (223)
T 2f8y_A 106 G--MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183 (223)
T ss_dssp H--HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred H--HHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4 44456668899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 799 PRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 799 ~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
++.+|..|.|||++|+..|+ .+++++|+++|+
T Consensus 184 ~~~~~~~g~t~l~~A~~~~~--~~i~~~L~~~g~ 215 (223)
T 2f8y_A 184 RDITDHMDRLPRDIAQERMH--HDIVRLLDEYNL 215 (223)
T ss_dssp TTCCCTTCCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred CccccccCCCHHHHHHHhcc--hHHHHHHHHcCC
Confidence 99999999999999999999 999999999874
No 29
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.85 E-value=1.3e-21 Score=193.52 Aligned_cols=158 Identities=22% Similarity=0.190 Sum_probs=139.0
Q ss_pred ccceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCC
Q 003309 650 VAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGT 729 (832)
Q Consensus 650 ~~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~ 729 (832)
....|+.|+..|+...|..+|...+.++|..+..+ .+++++++..++. ....+|+..
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g---------------------~t~L~~A~~~~~~--~~v~~Ll~~ 61 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHG---------------------FSPLHWACREGRS--AVVEMLIMR 61 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTS---------------------CCHHHHHHHTTCH--HHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCC---------------------CCHHHHHHHcCcH--HHHHHHHHc
Confidence 34678999999999999888876688888766544 5677776665544 344556677
Q ss_pred CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q 003309 730 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS 809 (832)
Q Consensus 730 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~Tp 809 (832)
|++++..|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 62 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 141 (179)
T 3f6q_A 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 141 (179)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCG
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcHHHHHHHhhCCC
Q 003309 810 LELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 810 L~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|++|+..++ .+++++|+++|+
T Consensus 142 l~~A~~~~~--~~~~~~L~~~g~ 162 (179)
T 3f6q_A 142 VDKAKAPLR--ELLRERAEKMGQ 162 (179)
T ss_dssp GGGSCHHHH--HHHHHHHHHTTC
T ss_pred HHHHHHHHH--HHHHHHHHHhhc
Confidence 999999988 999999999874
No 30
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.84 E-value=3.2e-21 Score=189.15 Aligned_cols=154 Identities=21% Similarity=0.202 Sum_probs=134.2
Q ss_pred ceeehhhhcCchhhhHhhhhccccc-cccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVD-VNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS 730 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gad-vN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~ 730 (832)
..|+.|+..|+...|..+| ..|.+ +|..+.. +.+++++++..++.. ...+|+..|
T Consensus 4 ~~L~~A~~~g~~~~v~~ll-~~~~~~~~~~~~~---------------------g~t~L~~A~~~~~~~--~v~~Ll~~g 59 (172)
T 3v30_A 4 LSIHQLAAQGELDQLKEHL-RKGDNLVNKPDER---------------------GFTPLIWASAFGEIE--TVRFLLEWG 59 (172)
T ss_dssp CCHHHHHHTTCHHHHHHHH-TTCSGGGGCCCTT---------------------SCCHHHHHHHTTCHH--HHHHHHHHT
T ss_pred hhHHHHHHcCCHHHHHHHH-HcCcccccCCCCC---------------------CCCHHHHHHHcCCHH--HHHHHHHcC
Confidence 3588999999999888887 44554 7665543 367777777665544 444556778
Q ss_pred CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 003309 731 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL 810 (832)
Q Consensus 731 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL 810 (832)
++++..|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 60 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 139 (172)
T 3v30_A 60 ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM 139 (172)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHhhCC
Q 003309 811 ELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 811 ~~A~~~g~~d~~iv~lLl~~g 831 (832)
|+|+..|+ .+++++|+++|
T Consensus 140 ~~A~~~~~--~~~~~~L~~~~ 158 (172)
T 3v30_A 140 DLAVALGY--RKVQQVIENHI 158 (172)
T ss_dssp HHHHHHTC--HHHHHHHHHHH
T ss_pred HHHHHhCc--HHHHHHHHHHH
Confidence 99999999 99999999865
No 31
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.84 E-value=2.6e-21 Score=193.46 Aligned_cols=154 Identities=21% Similarity=0.137 Sum_probs=134.7
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
..|+.|+..++...|..+ ++.|+++|..+..+ .+++++++..+... ...+|+..|+
T Consensus 37 t~L~~A~~~g~~~~v~~L-l~~~~~~~~~~~~g---------------------~t~L~~A~~~~~~~--~v~~Ll~~g~ 92 (192)
T 2rfm_A 37 TPLMVACMLGMENAIDKL-VENFDKLEDKDIEG---------------------STALIWAVKNNRLG--IAEKLLSKGS 92 (192)
T ss_dssp CHHHHHHHHTCGGGHHHH-HHHHCCTTCCCTTS---------------------CCHHHHHHHTTCHH--HHHHHHHHTC
T ss_pred CHHHHHHHcCCHHHHHHH-HHhccccccccccC---------------------ccHHHHHHHcCCHH--HHHHHHHCCC
Confidence 458889999988766554 58899998765543 56777776665444 4445666789
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE 811 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~ 811 (832)
+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||+
T Consensus 93 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~ 172 (192)
T 2rfm_A 93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA 172 (192)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHhhCC
Q 003309 812 LAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 812 ~A~~~g~~d~~iv~lLl~~g 831 (832)
+|+..|+ .+++++|+++|
T Consensus 173 ~A~~~~~--~~~v~~Ll~~~ 190 (192)
T 2rfm_A 173 SARIFGR--QEVIKIFTEVR 190 (192)
T ss_dssp HHHHTTC--HHHHHHHHHHH
T ss_pred HHHHhCc--HHHHHHHHhcc
Confidence 9999999 99999999864
No 32
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.84 E-value=6.6e-21 Score=201.94 Aligned_cols=106 Identities=29% Similarity=0.340 Sum_probs=98.5
Q ss_pred cccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 003309 725 NLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKAMFAKLLLTRGADPRAVN 803 (832)
Q Consensus 725 ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~-g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~ 803 (832)
.+...+.+++..|..|.||||+|+..|+.+++++|+++|++++..+.. |+||||+|+..|+.++|++|+++|++++.+|
T Consensus 143 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d 222 (282)
T 1oy3_D 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM 222 (282)
T ss_dssp -CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred hhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence 344455668889999999999999999999999999999999999865 9999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 804 REGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 804 ~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
..|.||||+|+..|+ .+++++|+++|+
T Consensus 223 ~~g~tpL~~A~~~~~--~~~v~~Ll~~ga 249 (282)
T 1oy3_D 223 YGGRTPLGSALLRPN--PILARLLRAHGA 249 (282)
T ss_dssp TTSCCHHHHHHTSSC--HHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHcCC--cHHHHHHHHcCC
Confidence 999999999999999 999999999885
No 33
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.84 E-value=3.3e-21 Score=212.98 Aligned_cols=179 Identities=13% Similarity=0.061 Sum_probs=151.0
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchh-----hhhhhhHHHHHhhhhc-------------------------
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-----SCISSLTLAKAMLLNE------------------------- 700 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-----~~~~~l~~~~~ll~~~------------------------- 700 (832)
...|+.|+..|+.+.| ++|++.|++++..++.. ...++..+++.|+...
T Consensus 54 ~t~L~~A~~~g~~~~v-~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (364)
T 3ljn_A 54 CTALHLACKFGCVDTA-KYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSH 132 (364)
T ss_dssp CCHHHHHHHHCCHHHH-HHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTE
T ss_pred CcHHHHHHHcCCHHHH-HHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccc
Confidence 3568888888877654 56668899888754432 3456677777777641
Q ss_pred -cccCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCC
Q 003309 701 -QTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGAN-----INATDSRGL 774 (832)
Q Consensus 701 -~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gad-----vn~~d~~g~ 774 (832)
.+..+.|++++++..+.....+..+|+..|++++..|..|.||||+|+..|+.+++++|+++|++ +|..|..|+
T Consensus 133 ~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~ 212 (364)
T 3ljn_A 133 VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN 212 (364)
T ss_dssp EEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred cCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence 44467888888887774345555666777999999999999999999999999999999999999 999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 775 TPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 775 TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+ .++|++|+++|+
T Consensus 213 t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~--~~~v~~Ll~~~~ 268 (364)
T 3ljn_A 213 SHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAM--VLLTKELLQKTD 268 (364)
T ss_dssp CTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCC--HHHHHHHHHHSC
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh--HHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999 999999999764
No 34
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.84 E-value=1.1e-20 Score=197.81 Aligned_cols=174 Identities=17% Similarity=0.175 Sum_probs=146.3
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhcc------ccCCCCcccccccccCc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQ------TSLERSSSSLTGNSSDR 718 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~------~~~~~~~~~l~~~~~~~ 718 (832)
..|+.|+..|+.+.| ++|++.|+|+|..+..+ ...++..+++.|+.... +..+.+++++++..+..
T Consensus 59 t~L~~A~~~g~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 137 (253)
T 1yyh_A 59 TALHLAARYSRSDAA-KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 137 (253)
T ss_dssp CHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCS
T ss_pred cHHHHHHHcCCHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChH
Confidence 468888888887755 55568899999877654 22455566777765433 34567888888776655
Q ss_pred cccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 003309 719 SSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 798 (832)
Q Consensus 719 ~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 798 (832)
.. ..+|+..|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 138 ~~--v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 215 (253)
T 1yyh_A 138 GM--LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215 (253)
T ss_dssp SH--HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HH--HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 44 4445668899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhC
Q 003309 799 PRAVNREGKTSLELAVESNFADSEVLAILSDS 830 (832)
Q Consensus 799 ~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~ 830 (832)
++.+|..|.|||++|+..|+ .+|+++|...
T Consensus 216 ~~~~d~~g~tpl~~A~~~g~--~~i~~~l~~~ 245 (253)
T 1yyh_A 216 RDITDHMDRLPRDIAQERMH--HDIVRLLDLE 245 (253)
T ss_dssp TTCCCTTCCCHHHHHHHTTC--HHHHHHHHC-
T ss_pred ccccccCCCCHHHHHHHcCC--HHHHHHHHHH
Confidence 99999999999999999999 9999999864
No 35
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.84 E-value=1.5e-21 Score=204.51 Aligned_cols=175 Identities=17% Similarity=0.117 Sum_probs=139.5
Q ss_pred eeehhhhcCchhhh---Hhhhhcccccccc----ccchh-------hhh---hhhHHHHHhhhhccc-------------
Q 003309 653 QIWEGVRTNDKKAV---YRHIVNFEVDVNA----VYEQV-------SCI---SSLTLAKAMLLNEQT------------- 702 (832)
Q Consensus 653 ~L~~Av~~~d~~~v---~~lL~~~gadvN~----~~~~~-------~~~---~~l~~~~~ll~~~~~------------- 702 (832)
.|+.|+..|+.+.| +++|+..|+|+|. .+..+ ... ++..+++.|+.....
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 46777777777643 3445567777776 44443 112 445555555553222
Q ss_pred ---cCCCCcccccccccCccccccccccCCCCCCCcCCCC-------------CCcHHHHHHHcCCHHHHHHHHH---cC
Q 003309 703 ---SLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLE-------------GCTLLHLACDSADIGMLELLLQ---YG 763 (832)
Q Consensus 703 ---~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~-------------g~TpLh~Aa~~g~~~~v~~Ll~---~g 763 (832)
..+.|++++|+..++.. +..+|+..|++++..|.. |.||||+|+..|+.+++++|++ +|
T Consensus 85 ~~d~~g~t~L~~A~~~g~~~--~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g 162 (256)
T 2etb_A 85 DEFYQGHSALHIAIEKRSLQ--CVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP 162 (256)
T ss_dssp STTTTTCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred cccccCCCHHHHHHHcCCHH--HHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence 34778888877766544 444566779999998886 9999999999999999999999 99
Q ss_pred CCCCccCCCCCcHHHHHHH--cCCHH-------HHHHHHhCCCCC-------CCCCCCCCcHHHHHHHcCCCcHHHHHHH
Q 003309 764 ANINATDSRGLTPLHRCIL--RGKAM-------FAKLLLTRGADP-------RAVNREGKTSLELAVESNFADSEVLAIL 827 (832)
Q Consensus 764 advn~~d~~g~TpLh~A~~--~g~~~-------~v~~Ll~~gad~-------~~~~~~g~TpL~~A~~~g~~d~~iv~lL 827 (832)
+++|.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|.||||+|+..|+ .+++++|
T Consensus 163 a~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~--~~~v~~L 240 (256)
T 2etb_A 163 ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK--IEIFRHI 240 (256)
T ss_dssp CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC--HHHHHHH
T ss_pred CCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC--HHHHHHH
Confidence 9999999999999999999 78888 999999999999 8999999999999999999 9999999
Q ss_pred hhCC
Q 003309 828 SDSH 831 (832)
Q Consensus 828 l~~g 831 (832)
+++|
T Consensus 241 l~~g 244 (256)
T 2etb_A 241 LQRE 244 (256)
T ss_dssp HHHH
T ss_pred HhCC
Confidence 9976
No 36
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=99.84 E-value=6.4e-21 Score=177.79 Aligned_cols=117 Identities=26% Similarity=0.430 Sum_probs=79.2
Q ss_pred cceeEEEEEEecCCC-CCCCCceeEEEEeCCceEEEEecCCC---CCCCCCCCCccccCcCccCCCccccccccccCCCC
Q 003309 291 VQTIRQGYLSKRSSN-LRGDWKRRFFVLDSRGMLYYYRKQCS---KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV 366 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~-~~~~WkrRwfvL~~~~~l~yy~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (832)
..++++|||+|++++ ..++|+||||||+++++|+||++..+ ...+... .+..
T Consensus 2 ~~~~k~G~L~K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i-------------~l~~----------- 57 (128)
T 2rlo_A 2 AIPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEM-------------DLLR----------- 57 (128)
T ss_dssp CCEEEEEEEEEECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEE-------------ESSS-----------
T ss_pred CcceeEEEEEEecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCee-------------eeee-----------
Confidence 457899999999654 67899999999998899999976321 0000000 0000
Q ss_pred CCccccccccccccccccccC-----CcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHHHHc
Q 003309 367 HDEKSAARHTVNLLTSTIKVD-----ADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLS 432 (832)
Q Consensus 367 ~~~~~~~~~~i~l~~~~v~~~-----~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 432 (832)
-....+.+.|.+..|++.+. +...+++|||+|++++ |+|+|+|+|++||++||.||+.+|..+++
T Consensus 58 -~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~l~ 128 (128)
T 2rlo_A 58 -TTVKVPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASLQ 128 (128)
T ss_dssp -CEEECSSCCCCCSSCCCSCCSCCCCSSCCCCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred -eEEecCCCccccccccccccccccccccccCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHcC
Confidence 00011223344444443211 1112578999999998 99999999999999999999999988764
No 37
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.84 E-value=5.7e-21 Score=202.96 Aligned_cols=157 Identities=23% Similarity=0.262 Sum_probs=135.4
Q ss_pred ceeehhhhcCchhhhHhhhhcccc-ccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccc---cCcccccccccc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEV-DVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNS---SDRSSSGSLNLA 727 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~ga-dvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~---~~~~~~~~lll~ 727 (832)
..|+.|+..|+.+.|. +|++.|+ ++|..+..+ .+++++++.. ..........|+
T Consensus 113 T~Lh~A~~~g~~~~v~-~Ll~~g~~~~~~~~~~g---------------------~tpL~~a~~~~~~~~~~~~~v~~Ll 170 (276)
T 4hbd_A 113 TALHYSVSHANFPVVQ-QLLDSGVCKVDKQNRAG---------------------YSPIMLTALATLKTQDDIETVLQLF 170 (276)
T ss_dssp CHHHHHHHTTCHHHHH-HHHHTSCCCTTCCCTTS---------------------CCHHHHGGGCCCCSHHHHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHH-HHHHCCCCcCCCCCCCC---------------------CCHHHHHHHHHhhhhhhHHHHHHHH
Confidence 5688899888887654 5558887 888766544 5677766643 333444556677
Q ss_pred CCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC
Q 003309 728 GTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT-RGADPRAVNREG 806 (832)
Q Consensus 728 ~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~~~~g 806 (832)
..|++++..|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|++ .|++++.+|..|
T Consensus 171 ~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g 250 (276)
T 4hbd_A 171 RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG 250 (276)
T ss_dssp HHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTS
T ss_pred HcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCC
Confidence 7788888999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred CcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 807 KTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 807 ~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
.||||+|+..|+ .+++++|+++++
T Consensus 251 ~TpL~~A~~~g~--~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 251 STALMVALDAGQ--SEIASMLYSRMN 274 (276)
T ss_dssp CCHHHHHHHHTC--HHHHHHHHHHCC
T ss_pred CCHHHHHHHcCC--HHHHHHHHhccC
Confidence 999999999999 999999998764
No 38
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.83 E-value=2.5e-20 Score=191.22 Aligned_cols=127 Identities=20% Similarity=0.195 Sum_probs=109.2
Q ss_pred cCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Q 003309 703 SLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCIL 782 (832)
Q Consensus 703 ~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~ 782 (832)
..+.+++++++..+....+..++-.+.+++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 70 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 149 (228)
T 2dzn_A 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149 (228)
T ss_dssp TTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 45677888877776555444433333348899999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHh-hCC
Q 003309 783 RGKAMFAKLLLTRG-ADPRAVNREGKTSLELAVESNFADSEVLAILS-DSH 831 (832)
Q Consensus 783 ~g~~~~v~~Ll~~g-ad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl-~~g 831 (832)
.|+.+++++|+++| ++++.+|..|.||||+|+..|+ .+++++|+ +.|
T Consensus 150 ~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~--~~~v~~Ll~~~g 198 (228)
T 2dzn_A 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH--GDAAVLLVEKYG 198 (228)
T ss_dssp TTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC--HHHHHHHHHHHC
T ss_pred cCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCC--HHHHHHHHHhcC
Confidence 99999999999999 9999999999999999999998 89999999 655
No 39
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.83 E-value=1.6e-20 Score=184.10 Aligned_cols=113 Identities=32% Similarity=0.480 Sum_probs=105.8
Q ss_pred ccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 003309 718 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA 797 (832)
Q Consensus 718 ~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 797 (832)
+....+..|+..|+++|.+|.+|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|+
T Consensus 15 G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 94 (169)
T 4gpm_A 15 GNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94 (169)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcC
Confidence 34444555677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 798 DPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 798 d~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+++.+|.+|.||||+|+..|+ .++|++|+++|+
T Consensus 95 dvn~~d~~G~TpLh~A~~~g~--~~~v~~Ll~~ga 127 (169)
T 4gpm_A 95 DVNAKDSDGRTPLHHAAENGH--KEVVKLLISKGA 127 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 999999999999999999999 999999999874
No 40
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.83 E-value=1.7e-20 Score=200.90 Aligned_cols=156 Identities=21% Similarity=0.207 Sum_probs=124.7
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCC
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS 730 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~ 730 (832)
...|+.|+..|+...|..+| +.|+|+|..+..+ .|++++|+..++.. +..+|+..|
T Consensus 41 ~t~l~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g---------------------~t~L~~A~~~g~~~--~v~~Ll~~g 96 (299)
T 1s70_B 41 GAVFLAACSSGDTEEVLRLL-ERGADINYANVDG---------------------LTALHQACIDDNVD--MVKFLVENG 96 (299)
T ss_dssp HHHHHHHHHHTCHHHHHHHH-HHCCCTTCBCTTC---------------------CBHHHHHHHTTCHH--HHHHHHHTT
T ss_pred ccHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCC---------------------CCHHHHHHHcCCHH--HHHHHHHCC
Confidence 35688899999998776655 8899999866544 45666655554433 344455567
Q ss_pred CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC----------------------------------------
Q 003309 731 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD---------------------------------------- 770 (832)
Q Consensus 731 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d---------------------------------------- 770 (832)
++++..|..|.||||+|+..|+.+++++|+++|++++..|
T Consensus 97 a~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 176 (299)
T 1s70_B 97 ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176 (299)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhH
Confidence 7888888888888888888888888888888888776554
Q ss_pred --------------------CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhC
Q 003309 771 --------------------SRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS 830 (832)
Q Consensus 771 --------------------~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~ 830 (832)
..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+++
T Consensus 177 ~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~--~~~v~~Ll~~ 254 (299)
T 1s70_B 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK--EEACRILVEN 254 (299)
T ss_dssp HHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC--HHHHHHHHHT
T ss_pred HHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCC--HHHHHHHHHc
Confidence 347788899999999999999999999999999999999999999998 9999999998
Q ss_pred CC
Q 003309 831 HG 832 (832)
Q Consensus 831 gg 832 (832)
|+
T Consensus 255 ga 256 (299)
T 1s70_B 255 LC 256 (299)
T ss_dssp TC
T ss_pred CC
Confidence 74
No 41
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.83 E-value=4.1e-21 Score=180.87 Aligned_cols=123 Identities=18% Similarity=0.178 Sum_probs=111.2
Q ss_pred CCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-CCcHHHHHHHc
Q 003309 705 ERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILR 783 (832)
Q Consensus 705 ~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~-g~TpLh~A~~~ 783 (832)
+.+++++++..+... ....|+..|++++..|..|.||||+|+. |+.+++++|+++|++++.+|.. |+||||+|+..
T Consensus 12 g~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 88 (136)
T 1d9s_A 12 SDAGLATAAARGQVE--TVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAARE 88 (136)
T ss_dssp CSCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHH
T ss_pred CccHHHHHHHcCCHH--HHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHc
Confidence 366777776665544 4444556789999999999999999999 9999999999999999999999 99999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 784 GKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 784 g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|+.+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 89 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~--~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 89 GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH--RDIARYLHAATG 135 (136)
T ss_dssp TCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTC--HHHHHHHHHHHC
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 99999999999999999999999999999999999 999999999875
No 42
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.83 E-value=3.6e-20 Score=190.51 Aligned_cols=176 Identities=20% Similarity=0.224 Sum_probs=135.8
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhcc-----ccCCCCcccccccccCc
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQ-----TSLERSSSSLTGNSSDR 718 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~-----~~~~~~~~~l~~~~~~~ 718 (832)
...|+.|+..++.+.| ++|++.|+++|..+..+ ...++..+++.|+.... +..+.+++++++..+..
T Consensus 41 ~t~L~~A~~~g~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 119 (231)
T 3aji_A 41 RTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119 (231)
T ss_dssp CCHHHHHHHHTCHHHH-HHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCHHHHHHHcCcHHHH-HHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3567888888887755 55558899999876654 22445566666665333 23456677766655443
Q ss_pred cccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 003309 719 SSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 798 (832)
Q Consensus 719 ~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 798 (832)
. ...+|+..|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 120 ~--~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 197 (231)
T 3aji_A 120 E--IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197 (231)
T ss_dssp H--HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred H--HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence 3 44455667888888888899999999999999999999999999888888899999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 799 PRAVNREGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 799 ~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
++.+|..|.|||++|+..++ .+++++|+++|
T Consensus 198 ~~~~~~~g~t~l~~A~~~~~--~~i~~lL~~~~ 228 (231)
T 3aji_A 198 IYIENKEEKTPLQVAKGGLG--LILKRLAEGEE 228 (231)
T ss_dssp SCCCCTTSCCHHHHSCHHHH--HHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHhhHH--HHHHHHHcccc
Confidence 98888889999999888877 88888888765
No 43
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.82 E-value=2.3e-20 Score=168.41 Aligned_cols=95 Identities=19% Similarity=0.361 Sum_probs=74.8
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEe----cC-CCCCCCCCCCCccccCcCccCCCccccccccccCCCCC
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYR----KQ-CSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH 367 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (832)
..++|||+|+++...|.||||||||.+ ..||||+ ++ +..|
T Consensus 8 ~~~~G~L~KqG~~~~K~WKrRwFVL~~-~~LyYfk~~~~~~~~~~p---------------------------------- 52 (126)
T 1wi1_A 8 MKHSGYLWAIGKNVWKRWKKRFFVLVQ-VSQYTFAMCSYREKKAEP---------------------------------- 52 (126)
T ss_dssp EEEEEEEEEECSSSCCSCEEEEEEEEE-EETTEEEEEECCSSSSCC----------------------------------
T ss_pred CceeEEEEEeCCCcccccceEEEEEeC-CEEEEEEcccccccCCCC----------------------------------
Confidence 578999999987677899999999995 5666765 33 2222
Q ss_pred Ccccccccccccccccccc---CCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 368 DEKSAARHTVNLLTSTIKV---DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 368 ~~~~~~~~~i~l~~~~v~~---~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.+.|.|..++|.. .++...++|+|+|++++++|+|+|+|++||++||.||..|+.
T Consensus 53 ------~G~I~L~g~tV~~~~~~~~~~~~k~~F~~v~~~~ty~~~Adseee~~~WikAi~~A~~ 110 (126)
T 1wi1_A 53 ------QELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATG 110 (126)
T ss_dssp ------SEEEECSSCEEEECCCCSSCCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ------ceEEECCCcEEEEecCCcccccCceEEEEecCCceEEEEcCCHHHHHHHHHHHHHHhc
Confidence 2446676677652 233346889999999999999999999999999999999874
No 44
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.82 E-value=2.7e-21 Score=192.73 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=128.6
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCcc--ccccccccCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRS--SSGSLNLAGT 729 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~--~~~~lll~~~ 729 (832)
..|+.|++.|+...+..++ .. ++|..+. ..|.||+++++..++.. ..+..+|+..
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~-~~--~~~~~~~--------------------~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~ 64 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELF-EK--GYEDKES--------------------VLKSNILYDVLRNNNDEARYKISMFLINK 64 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHH-HH--SSSCHHH--------------------HHTTTHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHcCCHHHHHHHH-hc--Ccccccc--------------------cCCCCHHHHHHHcCCcchHHHHHHHHHHC
Confidence 5689999999999988776 33 3444331 12467888877766432 2345567789
Q ss_pred CCCCCcCCCCCCcHHHHHHHcCC------HHHHHHHHHcCCCCCccCCCCC-cHHHHHHHcC-----CHHHHHHHHh-CC
Q 003309 730 SEGQTMDDLEGCTLLHLACDSAD------IGMLELLLQYGANINATDSRGL-TPLHRCILRG-----KAMFAKLLLT-RG 796 (832)
Q Consensus 730 ~~~~~~~d~~g~TpLh~Aa~~g~------~~~v~~Ll~~gadvn~~d~~g~-TpLh~A~~~g-----~~~~v~~Ll~-~g 796 (832)
|++++.+|..|+||||+|+..|+ .+++++||++|+++|.+|..|+ ||||+|+..+ +.+++++|++ +|
T Consensus 65 Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g 144 (186)
T 3t8k_A 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG 144 (186)
T ss_dssp TCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC
Confidence 99999999999999999999987 6889999999999999999999 9999999844 4579999999 99
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhh
Q 003309 797 ADPRAVNREGKTSLELAVESNFADSEVLAILSD 829 (832)
Q Consensus 797 ad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~ 829 (832)
++++.+|..|.||||+|+..|+ .++|++|++
T Consensus 145 ad~~~~d~~G~TpL~~A~~~~~--~~~v~~L~~ 175 (186)
T 3t8k_A 145 LQLLIKDKWGLTALEFVKRCQK--PIALKMMED 175 (186)
T ss_dssp CCTTCCCTTSCCHHHHHHTTTC--HHHHHHHHH
T ss_pred CCCcccCCCCCCHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999999 999999986
No 45
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.82 E-value=9.1e-21 Score=196.03 Aligned_cols=157 Identities=24% Similarity=0.248 Sum_probs=129.9
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCC--
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGT-- 729 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~-- 729 (832)
..|+.|+..++... +++|++.|+|+|..+..+ .+++++++..++...+..++-.+.
T Consensus 47 t~L~~A~~~~~~~~-v~~Ll~~g~~~~~~~~~g---------------------~t~L~~A~~~~~~~~v~~Ll~~~~~~ 104 (236)
T 1ikn_D 47 TPLHLAVITNQPEI-AEALLGAGCDPELRDFRG---------------------NTPLHLACEQGCLASVGVLTQSCTTP 104 (236)
T ss_dssp CHHHHHHHTTCHHH-HHCCCSCCCCSCCCCTTC---------------------CCHHHHHHHHTCHHHHHHHHHSTTTT
T ss_pred CHHHHHHHcCCHHH-HHHHHHcCCCCCCcCCCC---------------------CCHHHHHHHcCCHHHHHHHHhcccch
Confidence 45777888777664 455668899888765443 677777776665554443332222
Q ss_pred --CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 003309 730 --SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREG 806 (832)
Q Consensus 730 --~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g 806 (832)
...++..+..|.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.++|++|+++|++++.+|..|
T Consensus 105 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g 184 (236)
T 1ikn_D 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 184 (236)
T ss_dssp SSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTC
T ss_pred hHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCC
Confidence 122567788999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 807 KTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 807 ~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
.||||+|+..|+ .+++++|+++|+
T Consensus 185 ~tpl~~A~~~~~--~~~~~~Ll~~ga 208 (236)
T 1ikn_D 185 YSPYQLTWGRPS--TRIQQQLGQLTL 208 (236)
T ss_dssp CCGGGGCTTSSC--HHHHHHHHTTSC
T ss_pred CCHHHHHHccCc--hHHHHHHHHcch
Confidence 999999999999 999999999885
No 46
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.82 E-value=5.9e-20 Score=172.90 Aligned_cols=122 Identities=32% Similarity=0.482 Sum_probs=109.9
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCC
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS 730 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~ 730 (832)
...|+.|+..|+.+.|..+| +.|+|+|.
T Consensus 15 ~t~l~~A~~~g~~~~v~~Ll-~~g~~~~~--------------------------------------------------- 42 (136)
T 2jab_A 15 GKKLLEAARAGQDDEVRILM-ANGADVNA--------------------------------------------------- 42 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHH-HTTCCTTC---------------------------------------------------
T ss_pred cHHHHHHHHhCCHHHHHHHH-HcCCCCCC---------------------------------------------------
Confidence 35688899998888665544 67777764
Q ss_pred CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 003309 731 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL 810 (832)
Q Consensus 731 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL 810 (832)
.|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 43 -----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl 117 (136)
T 2jab_A 43 -----KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117 (136)
T ss_dssp -----CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred -----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHH
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHhhCC
Q 003309 811 ELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 811 ~~A~~~g~~d~~iv~lLl~~g 831 (832)
|+|+..|+ .+++++|++.|
T Consensus 118 ~~A~~~~~--~~~~~~Ll~~G 136 (136)
T 2jab_A 118 DISIGNGN--EDLAEILQKLN 136 (136)
T ss_dssp HHHHHTTC--HHHHHHHHHC-
T ss_pred HHHHHCCC--HHHHHHHHHcC
Confidence 99999999 99999999976
No 47
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.82 E-value=6.2e-21 Score=200.25 Aligned_cols=177 Identities=14% Similarity=0.085 Sum_probs=142.4
Q ss_pred ceeehhhhcCchhhhHhhh---hccccccccccc----hh-------h---hhhhhHHHHHhhhhccc------------
Q 003309 652 HQIWEGVRTNDKKAVYRHI---VNFEVDVNAVYE----QV-------S---CISSLTLAKAMLLNEQT------------ 702 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL---~~~gadvN~~~~----~~-------~---~~~~l~~~~~ll~~~~~------------ 702 (832)
..|+.|++.|+...|..+| +..|+++|..+. .+ . ..++..+++.|+.....
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence 3578888888887755444 357888886541 12 1 23556666666653321
Q ss_pred ----cCCCCcccccccccCccccccccccCCCCCCCcCC--------------CCCCcHHHHHHHcCCHHHHHHHHH---
Q 003309 703 ----SLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDD--------------LEGCTLLHLACDSADIGMLELLLQ--- 761 (832)
Q Consensus 703 ----~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d--------------~~g~TpLh~Aa~~g~~~~v~~Ll~--- 761 (832)
..+.|++++|+..++.. +..+|+..|++++..+ ..|.||||+|+..|+.+++++|++
T Consensus 87 ~~~d~~g~t~L~~A~~~g~~~--~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 164 (260)
T 3jxi_A 87 RDVYYRGQTALHIAIERRCKH--YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164 (260)
T ss_dssp CCSSEESBCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccCCCCHHHHHHHcCCHH--HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 25678888877765544 4455666789999988 689999999999999999999999
Q ss_pred cCCCCCccCCCCCcHHHHHHHcCC---------HHHHHHHHhCCCCC-------CCCCCCCCcHHHHHHHcCCCcHHHHH
Q 003309 762 YGANINATDSRGLTPLHRCILRGK---------AMFAKLLLTRGADP-------RAVNREGKTSLELAVESNFADSEVLA 825 (832)
Q Consensus 762 ~gadvn~~d~~g~TpLh~A~~~g~---------~~~v~~Ll~~gad~-------~~~~~~g~TpL~~A~~~g~~d~~iv~ 825 (832)
+|+++|.+|..|+||||+|+..|+ .+++++|+++|+++ +.+|..|.||||+|+..|+ .++|+
T Consensus 165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~--~~~v~ 242 (260)
T 3jxi_A 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK--IGIFQ 242 (260)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC--HHHHH
T ss_pred cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC--HHHHH
Confidence 999999999999999999999888 79999999999999 6799999999999999999 99999
Q ss_pred HHhhCCC
Q 003309 826 ILSDSHG 832 (832)
Q Consensus 826 lLl~~gg 832 (832)
+|+++|+
T Consensus 243 ~Ll~~g~ 249 (260)
T 3jxi_A 243 HIIRREI 249 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHhCC
Confidence 9999763
No 48
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.82 E-value=3.1e-20 Score=196.44 Aligned_cols=176 Identities=20% Similarity=0.199 Sum_probs=134.6
Q ss_pred ceeehhhhcCchhhhHhhhhcccccc--------ccccchhhh--------hhhhHHHHHhhh-----hccccCCCCccc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDV--------NAVYEQVSC--------ISSLTLAKAMLL-----NEQTSLERSSSS 710 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadv--------N~~~~~~~~--------~~~l~~~~~ll~-----~~~~~~~~~~~~ 710 (832)
..|+.|+..|+.+.|..|| +.|++. +..+..+.. .....++..++. +..+..|.||++
T Consensus 13 ~~L~~A~~~G~~~~v~~LL-~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh 91 (269)
T 4b93_B 13 EKLLRAVADGDLEMVRYLL-EWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLH 91 (269)
T ss_dssp HHHHHHHHTTCHHHHHHHH-TCC----------------------------------------CCCCTTCCCTTSCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHH-HCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence 4699999999998775554 777753 222222211 111122333333 234456788888
Q ss_pred ccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHH
Q 003309 711 LTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK 790 (832)
Q Consensus 711 l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~ 790 (832)
+|+..++...+ .+|+..+++++..+..|.||||+|+..++.+++++|+++|+++|.+|..|+||||+|+..|+.++|+
T Consensus 92 ~A~~~g~~~~v--~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~ 169 (269)
T 4b93_B 92 VAALHGRADLI--PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVA 169 (269)
T ss_dssp HHHHTTCTTHH--HHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHH
T ss_pred HHHHcCcHHHH--HHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 88877665543 4566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 791 LLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 791 ~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+||++|++++.++..|.||||+|+..|+ .++|++|+++|+
T Consensus 170 ~Ll~~gadvn~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~Ga 209 (269)
T 4b93_B 170 LLLQHGASINASNNKGNTALHEAVIEKH--VFVVELLLLHGA 209 (269)
T ss_dssp HHHHTTCCTTCBCTTSCBHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred HHHHCCCCCCccccCCCcHHHHHHHcCC--HHHHHHHHHCCC
Confidence 9999999999999999999999999999 999999999885
No 49
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.82 E-value=3.9e-20 Score=193.59 Aligned_cols=178 Identities=22% Similarity=0.196 Sum_probs=124.8
Q ss_pred ceeehhhhcC------------chhhhHhhhhccccccccc-cchh-------hhhhhhHHHHHhhhhccc-----cCCC
Q 003309 652 HQIWEGVRTN------------DKKAVYRHIVNFEVDVNAV-YEQV-------SCISSLTLAKAMLLNEQT-----SLER 706 (832)
Q Consensus 652 ~~L~~Av~~~------------d~~~v~~lL~~~gadvN~~-~~~~-------~~~~~l~~~~~ll~~~~~-----~~~~ 706 (832)
..|+.|+..| +...+++.|+..|++++.. +..+ ...++..+++.|+..+.+ ..+.
T Consensus 12 tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~ 91 (253)
T 1yyh_A 12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR 91 (253)
T ss_dssp ----------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred cHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 4577777765 2445666777999998754 3333 335667788888764333 4567
Q ss_pred CcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCH
Q 003309 707 SSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA 786 (832)
Q Consensus 707 ~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~ 786 (832)
+++++++..+....+ ..++.....+++..+..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.
T Consensus 92 t~L~~A~~~~~~~~v-~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~ 170 (253)
T 1yyh_A 92 TPLHAAVSADAQGVF-QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 170 (253)
T ss_dssp CHHHHHHHHTCHHHH-HHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH
T ss_pred CHHHHHHHcCCHHHH-HHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 888887766554433 2333333448999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 787 MFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 787 ~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 171 ~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~--~~~v~~Ll~~ga 214 (253)
T 1yyh_A 171 DAAVVLLKNGANKDMQNNREETPLFLAAREGS--YETAKVLLDHFA 214 (253)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC--HHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCC--HHHHHHHHHcCC
Confidence 99999999999999999999999999999999 999999999874
No 50
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.82 E-value=9.7e-20 Score=188.33 Aligned_cols=175 Identities=22% Similarity=0.170 Sum_probs=106.0
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhcc---------ccCCCCcccccccc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQ---------TSLERSSSSLTGNS 715 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~---------~~~~~~~~~l~~~~ 715 (832)
..|+.|+..++.+. +++|++.|+++|..+..+ ...++..+++.++.... +..+.+++++++..
T Consensus 48 t~L~~A~~~~~~~~-v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~ 126 (241)
T 1k1a_A 48 TPLHLAVITTLPSV-VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126 (241)
T ss_dssp CHHHHHHHTTCHHH-HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH
T ss_pred CHHHHHHHcCCHHH-HHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHc
Confidence 45666777766654 445557788877765543 12334445555544322 22344555555544
Q ss_pred cCccccccccccCCCCCCCcCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 003309 716 SDRSSSGSLNLAGTSEGQTMDD-LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 794 (832)
Q Consensus 716 ~~~~~~~~lll~~~~~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~ 794 (832)
+.. ....+|+..|++++..+ ..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|++
T Consensus 127 ~~~--~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 127 ECQ--ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp TCH--HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred CCH--HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 332 23334455566666666 567777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 795 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 795 ~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
+|++++.+|..|.||||+|+..|+ .++++.|++++
T Consensus 205 ~ga~~~~~~~~g~tpl~~A~~~~~--~~i~~~l~~~~ 239 (241)
T 1k1a_A 205 SGADSSLKNCHNDTPLMVARSRRV--IDILRGKATRP 239 (241)
T ss_dssp TTCCTTCCCTTSCCTTTTCSSHHH--HHHHTC-----
T ss_pred cCCCCCCcCCCCCCHHHHHHhcCc--HHHHhhhccCC
Confidence 777777777777777777777666 66777666654
No 51
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.81 E-value=1.4e-19 Score=186.78 Aligned_cols=164 Identities=20% Similarity=0.191 Sum_probs=81.3
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhc------cccCCCCcccccccccCc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNE------QTSLERSSSSLTGNSSDR 718 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~------~~~~~~~~~~l~~~~~~~ 718 (832)
..|+.|+..++.+.| ++|++.|+++|..+..+ ...++..+++.++... .+..+.+++++++..++.
T Consensus 46 t~L~~A~~~~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 124 (237)
T 3b7b_A 46 TPLMEAAENNHLEAV-KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124 (237)
T ss_dssp CHHHHHHHTTCHHHH-HHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CHHHHHHHhCCHHHH-HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH
Confidence 345556655555433 34446666666544432 1223334444444322 112233444444333222
Q ss_pred cccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 003309 719 SSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 798 (832)
Q Consensus 719 ~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 798 (832)
....+|+..|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++
T Consensus 125 --~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad 202 (237)
T 3b7b_A 125 --DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD 202 (237)
T ss_dssp --HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred --HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC
Confidence 222333344555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCCCCCcHHHHHHHcCC
Q 003309 799 PRAVNREGKTSLELAVESNF 818 (832)
Q Consensus 799 ~~~~~~~g~TpL~~A~~~g~ 818 (832)
++.+|..|.||||+|+..|+
T Consensus 203 ~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 203 VTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp TTCCCTTSCCHHHHSCTTCH
T ss_pred CCccCCCCCCHHHHHHHHHH
Confidence 55555555555555555554
No 52
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=1e-19 Score=159.15 Aligned_cols=92 Identities=39% Similarity=0.594 Sum_probs=88.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 003309 739 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNF 818 (832)
Q Consensus 739 ~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~ 818 (832)
+|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhhCCC
Q 003309 819 ADSEVLAILSDSHG 832 (832)
Q Consensus 819 ~d~~iv~lLl~~gg 832 (832)
.+++++|+++|+
T Consensus 81 --~~~~~~Ll~~ga 92 (93)
T 1n0q_A 81 --LEVVKLLLEAGA 92 (93)
T ss_dssp --HHHHHHHHHTTC
T ss_pred --HHHHHHHHHcCC
Confidence 999999999885
No 53
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.81 E-value=6.7e-20 Score=203.47 Aligned_cols=179 Identities=16% Similarity=0.216 Sum_probs=148.7
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhc--------cccCCCCcccccccc
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNE--------QTSLERSSSSLTGNS 715 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~--------~~~~~~~~~~l~~~~ 715 (832)
...|+.|+..++.+. +++|++.|+|+|..+..+ ...+++.+++.|+... .+..+.+++++++..
T Consensus 167 ~TpL~~A~~~g~~~i-v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~ 245 (373)
T 2fo1_E 167 NTPLMLAVLARRRRL-VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 245 (373)
T ss_dssp CCHHHHHHHHTCHHH-HHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS
T ss_pred CCHHHHHHHcChHHH-HHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHh
Confidence 356888998888764 456669999999877654 3345667777776533 345677888888766
Q ss_pred cCc-cccccccccCCCCCCCc--------CCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHcCC
Q 003309 716 SDR-SSSGSLNLAGTSEGQTM--------DDLEGCTLLHLACDSADIGMLELLLQYG-ANINATDSRGLTPLHRCILRGK 785 (832)
Q Consensus 716 ~~~-~~~~~lll~~~~~~~~~--------~d~~g~TpLh~Aa~~g~~~~v~~Ll~~g-advn~~d~~g~TpLh~A~~~g~ 785 (832)
++. ...+..+|+..|++++. .|..|.||||+|+..|+.++|++|+++| +++|.+|..|+||||+|+..|+
T Consensus 246 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~ 325 (373)
T 2fo1_E 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 325 (373)
T ss_dssp CSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCC
Confidence 532 34455567777888776 6778999999999999999999999886 9999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 786 AMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 786 ~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
.++|++|+++|++++.+|..|.||||+|+..|+ .+||++|+++++
T Consensus 326 ~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~--~~iv~~Ll~~~a 370 (373)
T 2fo1_E 326 IEVVMYLIQQGASVEAVDATDHTARQLAQANNH--HNIVDIFDRCRP 370 (373)
T ss_dssp HHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC--HHHHHHHHTTC-
T ss_pred HHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC--HHHHHHHHhcCc
Confidence 999999999999999999999999999999999 999999999874
No 54
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.81 E-value=3.7e-20 Score=190.39 Aligned_cols=177 Identities=19% Similarity=0.185 Sum_probs=151.9
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhcc-----ccCCCCcccccccccCcc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQ-----TSLERSSSSLTGNSSDRS 719 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~-----~~~~~~~~~l~~~~~~~~ 719 (832)
..|+.|+..|+.+.|..+|...+.+++..+..+ ...+++.+++.++..+. +..+.+++++++..+...
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 87 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE 87 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred chHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHH
Confidence 458999999999999988866666677665554 34567788888876433 345677888777665544
Q ss_pred ccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 003309 720 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 799 (832)
Q Consensus 720 ~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 799 (832)
...+|+..+++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus 88 --~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 165 (231)
T 3aji_A 88 --IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165 (231)
T ss_dssp --HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred --HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Confidence 445566788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 800 RAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 800 ~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 166 ~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga 196 (231)
T 3aji_A 166 NIQDTEGNTPLHLACDEER--VEEAKFLVTQGA 196 (231)
T ss_dssp CCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred cccCCCCCCHHHHHHHCCC--HHHHHHHHHCCC
Confidence 9999999999999999999 999999999874
No 55
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=164.84 Aligned_cols=100 Identities=28% Similarity=0.494 Sum_probs=81.1
Q ss_pred CcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 290 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 290 ~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
...++++|||+|+++...+.|+||||||+ ++.|+||+++...+.
T Consensus 7 ~~~~~~~G~L~K~~~~~~k~WkkR~fvL~-~~~L~yyk~~~~~~~----------------------------------- 50 (114)
T 2da0_A 7 GYGSEKKGYLLKKSDGIRKVWQRRKCSVK-NGILTISHATSNRQP----------------------------------- 50 (114)
T ss_dssp CCCSCEEEEEEEECSSSCCCEEEEEEEEE-TTEEEECCSSCCSCC-----------------------------------
T ss_pred CCCccEEEEEEEeCCCCCCCceeEEEEEe-CCEEEEEcCCCCCCC-----------------------------------
Confidence 35678999999997665589999999998 788888887543221
Q ss_pred cccccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 370 KSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
..|.++.|.|++. .+++|||+|+++.|+|+|+|+|++|+++||.+|+.+|..+++.
T Consensus 51 -----~~i~l~~~~v~~~---~~~~~~F~I~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 106 (114)
T 2da0_A 51 -----AKLNLLTCQVKPN---AEDKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKEEALTM 106 (114)
T ss_dssp -----EEEETTTSEEEEC---SSSSSCEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----CEEEeeeeEEEEC---CCCCCEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3355666766532 3568999999999999999999999999999999999998875
No 56
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.80 E-value=1.5e-19 Score=197.53 Aligned_cols=177 Identities=20% Similarity=0.194 Sum_probs=143.3
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhccc-----cCCCCcccccccccCc
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQT-----SLERSSSSLTGNSSDR 718 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~-----~~~~~~~~l~~~~~~~ 718 (832)
...|+.|+..|+...| ++|++.|+|+|..+..+ ...++..+++.|+..+.. ..+.+++++++..++.
T Consensus 59 ~t~L~~A~~~g~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 137 (351)
T 3utm_A 59 STPLHLAAGYNRVRIV-QLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV 137 (351)
T ss_dssp CCHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred CCHHHHHHHcCCHHHH-HHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3568888888887755 55668999999887664 334667788888764433 3456777777766554
Q ss_pred cccccccccCCCCCCCcCC------------------------------------------------------CCCCcHH
Q 003309 719 SSSGSLNLAGTSEGQTMDD------------------------------------------------------LEGCTLL 744 (832)
Q Consensus 719 ~~~~~lll~~~~~~~~~~d------------------------------------------------------~~g~TpL 744 (832)
.. ..+|+..|++++..+ ..|.|||
T Consensus 138 ~~--v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L 215 (351)
T 3utm_A 138 EV--CSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL 215 (351)
T ss_dssp HH--HHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHH
T ss_pred HH--HHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHH
Confidence 44 444556677766543 5678999
Q ss_pred HHHHHc---CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcH
Q 003309 745 HLACDS---ADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADS 821 (832)
Q Consensus 745 h~Aa~~---g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~ 821 (832)
|+|+.. +..+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .
T Consensus 216 ~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~--~ 293 (351)
T 3utm_A 216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH--L 293 (351)
T ss_dssp HHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC--H
T ss_pred HHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc--H
Confidence 999998 55899999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHhhCCC
Q 003309 822 EVLAILSDSHG 832 (832)
Q Consensus 822 ~iv~lLl~~gg 832 (832)
++|++|+++|+
T Consensus 294 ~~v~~Ll~~ga 304 (351)
T 3utm_A 294 QTCRLLLSYGS 304 (351)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 99999999875
No 57
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.80 E-value=3.9e-20 Score=191.28 Aligned_cols=179 Identities=18% Similarity=0.226 Sum_probs=148.0
Q ss_pred ceeehhhhcCchhhhHhhhh---ccccccccccchh-------hhhhhhHHHHHhhhhcc-----ccCCCCccccccccc
Q 003309 652 HQIWEGVRTNDKKAVYRHIV---NFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQ-----TSLERSSSSLTGNSS 716 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~---~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~-----~~~~~~~~~l~~~~~ 716 (832)
..|+.|+..|+.+.|..+|. ..|+++|..+..+ ...++..+++.|+..+. +..+.+++++++..+
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 46889999999887766653 4899999877654 33456677887776433 335677888877766
Q ss_pred CccccccccccCC--CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHcCCHHHHHHHH
Q 003309 717 DRSSSGSLNLAGT--SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD-SRGLTPLHRCILRGKAMFAKLLL 793 (832)
Q Consensus 717 ~~~~~~~lll~~~--~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~g~~~~v~~Ll 793 (832)
....+..++-.+. +.+++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+
T Consensus 91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 170 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170 (241)
T ss_dssp CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHH
Confidence 6555444333222 23888899999999999999999999999999999999999 78999999999999999999999
Q ss_pred hCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 794 TRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 794 ~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
++|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 171 ~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga 207 (241)
T 1k1a_A 171 QHGANVNAQMYSGSSALHSASGRGL--LPLVRTLVRSGA 207 (241)
T ss_dssp HTTCCTTCBCTTSCBHHHHHHHHTC--HHHHHHHHHTTC
T ss_pred HcCCCCCCcCCCCCCHHHHHHHcCC--HHHHHHHHhcCC
Confidence 9999999999999999999999999 999999999874
No 58
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.80 E-value=8.6e-20 Score=199.38 Aligned_cols=153 Identities=22% Similarity=0.187 Sum_probs=128.8
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCcc--ccccccccCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRS--SSGSLNLAGT 729 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~--~~~~lll~~~ 729 (832)
..|+.|+..|+.+.|..||.+.|+|||..+..+ .++++.++...... ..+..+|+..
T Consensus 170 T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g---------------------~t~l~~~~~~~~~~~~~~i~~lLl~~ 228 (337)
T 4g8k_A 170 TALMDAAEKGHVEVLKILLDEMGADVNACDNMG---------------------RNALIHALLSSDDSDVEAITHLLLDH 228 (337)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTS---------------------CCHHHHHHHHSCTTTHHHHHHHHHHT
T ss_pred cHHHHHHHCCCHHHHHHHHhccCCCcCccCCCC---------------------CcHHHHHHHHcCcccHHHHHHHHHHC
Confidence 468899999998877666556799999877654 34444443333222 2345567889
Q ss_pred CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCc
Q 003309 730 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKT 808 (832)
Q Consensus 730 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~T 808 (832)
|++++.+|..|+||||+|+..|+.+++++|+.. |+++|.+|..|+||||+|+..|+.++|++||++||+++.+ +
T Consensus 229 gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~ 303 (337)
T 4g8k_A 229 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----D 303 (337)
T ss_dssp TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----C
T ss_pred CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----C
Confidence 999999999999999999999999999999985 8999999999999999999999999999999999998764 5
Q ss_pred HHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 809 SLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 809 pL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|||+|+..|+ .+||++|+++||
T Consensus 304 ~L~~A~~~~~--~~iv~~Ll~~GA 325 (337)
T 4g8k_A 304 LVMTARRNYD--HSLVKVLLSHGA 325 (337)
T ss_dssp HHHHHHHTTC--HHHHHHHHHTTC
T ss_pred HHHHHHHcCC--HHHHHHHHHCcC
Confidence 9999999999 999999999986
No 59
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.80 E-value=1.7e-20 Score=194.79 Aligned_cols=153 Identities=22% Similarity=0.242 Sum_probs=106.7
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
..|+.|+..++...+. .|+++|+++|.. .. +.++++.++..++ ......|+..|+
T Consensus 7 t~L~~a~~~~~~~~~~-~ll~~g~~~~~~-~~---------------------~~t~L~~A~~~g~--~~~v~~Ll~~g~ 61 (239)
T 1ycs_B 7 VSLPPGKRTNLRKTGS-ERIAHGMRVKFN-PL---------------------PLALLLDSSLEGE--FDLVQRIIYEVD 61 (239)
T ss_dssp -----------------------------------------------------CHHHHHHHHHHTC--HHHHHHHTSTTS
T ss_pred ccCchhhhhhhHHHHH-HHhccCCCcccC-ch---------------------hhHHHHHHHHcCC--HHHHHHHHHcCC
Confidence 4577888887777665 455999999863 11 1234445544444 344455667888
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-cHH
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGK-TSL 810 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~-TpL 810 (832)
+++..|..|.||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.++..|. |||
T Consensus 62 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l 141 (239)
T 1ycs_B 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA 141 (239)
T ss_dssp SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHH
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998887 999
Q ss_pred HHH--HHcCCCcHHHHHHHhhCC
Q 003309 811 ELA--VESNFADSEVLAILSDSH 831 (832)
Q Consensus 811 ~~A--~~~g~~d~~iv~lLl~~g 831 (832)
|+| +..|+ .+++++|+++|
T Consensus 142 ~~a~~~~~g~--~~~~~~Ll~~~ 162 (239)
T 1ycs_B 142 DKCEEMEEGY--TQCSQFLYGVQ 162 (239)
T ss_dssp HHCCSSSTTC--CCHHHHHHHHH
T ss_pred HHHHHhhhcc--HHHHHHHHHhh
Confidence 999 67787 78999999865
No 60
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.80 E-value=3.9e-20 Score=195.78 Aligned_cols=126 Identities=25% Similarity=0.207 Sum_probs=112.3
Q ss_pred cCCCCcccccccccCccccccccccCCCCCCCcCCC--------------CCCcHHHHHHHcCCHHHHHHHHH---cCCC
Q 003309 703 SLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDL--------------EGCTLLHLACDSADIGMLELLLQ---YGAN 765 (832)
Q Consensus 703 ~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~--------------~g~TpLh~Aa~~g~~~~v~~Ll~---~gad 765 (832)
..+.|++++++..++.. +..+|+..|++++..+. .|.||||+|+..|+.+++++|++ +|++
T Consensus 99 ~~g~tpL~~A~~~g~~~--~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad 176 (273)
T 2pnn_A 99 YKGQTALHIAIERRNMT--LVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176 (273)
T ss_dssp TTTCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred CCCCCHHHHHHHcCCHH--HHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC
Confidence 35778888887766544 44456667999999887 79999999999999999999999 9999
Q ss_pred CCccCCCCCcHHHHHHHcCC---------HHHHHHHHhCCCCCC-------CCCCCCCcHHHHHHHcCCCcHHHHHHHhh
Q 003309 766 INATDSRGLTPLHRCILRGK---------AMFAKLLLTRGADPR-------AVNREGKTSLELAVESNFADSEVLAILSD 829 (832)
Q Consensus 766 vn~~d~~g~TpLh~A~~~g~---------~~~v~~Ll~~gad~~-------~~~~~g~TpL~~A~~~g~~d~~iv~lLl~ 829 (832)
+|.+|..|+||||+|+..|+ .+++++|+++|++++ .+|..|.||||+|+..|+ .++|++|++
T Consensus 177 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~--~~iv~~Ll~ 254 (273)
T 2pnn_A 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK--IGVLAYILQ 254 (273)
T ss_dssp TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC--HHHHHHHHH
T ss_pred ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh--HHHHHHHHH
Confidence 99999999999999999998 899999999999997 489999999999999999 999999999
Q ss_pred CCC
Q 003309 830 SHG 832 (832)
Q Consensus 830 ~gg 832 (832)
+|+
T Consensus 255 ~ga 257 (273)
T 2pnn_A 255 REI 257 (273)
T ss_dssp HHT
T ss_pred CCC
Confidence 875
No 61
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=189.96 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=141.7
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhcc-----ccCCCCcccccccccCcc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQ-----TSLERSSSSLTGNSSDRS 719 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~-----~~~~~~~~~l~~~~~~~~ 719 (832)
..|+.|+..|+.+.|.. |++.|+|+|..+..+ ...++..+++.|+..+. +..+.|++++++..++..
T Consensus 5 t~L~~A~~~g~~~~v~~-Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 83 (261)
T 2xai_A 5 SPMHEAAIHGHQLSLRN-LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD 83 (261)
T ss_dssp CHHHHHHHHTCHHHHHH-HHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred CHHHHHHHcCCHHHHHH-HHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 45788898888876654 447899999877665 23455667777766433 345677888877766544
Q ss_pred ccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 003309 720 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 799 (832)
Q Consensus 720 ~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 799 (832)
. ..+|+..|++++.. .+|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|+++
T Consensus 84 ~--v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 160 (261)
T 2xai_A 84 C--VNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160 (261)
T ss_dssp H--HHHHHHTTCCSSCS-CTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred H--HHHHHHCCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 4 44556677777754 46999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 800 RAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 800 ~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+. +..|.||||+|+..|+ .+++++|+++|+
T Consensus 161 ~~-~~~g~t~Lh~A~~~~~--~~~v~~Ll~~ga 190 (261)
T 2xai_A 161 NQ-GKGQDSPLHAVARTAS--EELACLLMDFGA 190 (261)
T ss_dssp TC-CBTTBCHHHHHHHHTC--HHHHHHHHHTTC
T ss_pred CC-CCCCCChHHHHHHcCC--HHHHHHHHHcCC
Confidence 95 8889999999999998 999999999875
No 62
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.79 E-value=3.2e-19 Score=182.37 Aligned_cols=167 Identities=23% Similarity=0.204 Sum_probs=136.0
Q ss_pred hhhhHhhhhccccccccc-cchh-------hhhhhhHHHHHhhhhccc-----cCCCCcccccccccCccccccccccCC
Q 003309 663 KKAVYRHIVNFEVDVNAV-YEQV-------SCISSLTLAKAMLLNEQT-----SLERSSSSLTGNSSDRSSSGSLNLAGT 729 (832)
Q Consensus 663 ~~~v~~lL~~~gadvN~~-~~~~-------~~~~~l~~~~~ll~~~~~-----~~~~~~~~l~~~~~~~~~~~~lll~~~ 729 (832)
..++++.|++.|++++.. +..+ ...++..+++.++....+ ..+.+++++++..++...+ ..++...
T Consensus 3 ~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v-~~Ll~~~ 81 (223)
T 2f8y_A 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF-QILIRNR 81 (223)
T ss_dssp --CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH-HHHHHBT
T ss_pred cHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHH-HHHHHcC
Confidence 344567777999999875 3332 335667778888764333 4556777777766544433 2333333
Q ss_pred CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q 003309 730 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS 809 (832)
Q Consensus 730 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~Tp 809 (832)
+.+++..+..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 161 (223)
T 2f8y_A 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161 (223)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence 44889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcHHHHHHHhhCCC
Q 003309 810 LELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 810 L~~A~~~g~~d~~iv~lLl~~gg 832 (832)
||+|+..|+ .+++++|+++|+
T Consensus 162 L~~A~~~~~--~~~v~~Ll~~ga 182 (223)
T 2f8y_A 162 LFLAAREGS--YETAKVLLDHFA 182 (223)
T ss_dssp HHHHHHHTC--HHHHHHHHHTTC
T ss_pred HHHHHHcCC--HHHHHHHHHcCC
Confidence 999999999 999999999874
No 63
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.79 E-value=5.3e-19 Score=187.10 Aligned_cols=177 Identities=19% Similarity=0.167 Sum_probs=146.8
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhcc---------------ccCCCCcc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQ---------------TSLERSSS 709 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~---------------~~~~~~~~ 709 (832)
..|+.|+..++.+.+ ++|++.|+++|..+..+ ...++..+++.++.... +..+.+++
T Consensus 74 t~L~~A~~~~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 74 TPFLLAAIAGSVKLL-KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp CHHHHHHHHTCHHHH-HHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred CHHHHHHHcCCHHHH-HHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 567888888887655 56668999999877654 23456677777776433 23355777
Q ss_pred cccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC
Q 003309 710 SLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD----IGMLELLLQYGANINATDSRGLTPLHRCILRGK 785 (832)
Q Consensus 710 ~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~----~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~ 785 (832)
++++..++... +..++...+++++..|..|.||||+|+..++ .+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 153 ~~A~~~~~~~~-v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 153 MDAAEKGHVEV-LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HHHHHHTCHHH-HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHcCCHHH-HHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 77776555443 3333445589999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 786 AMFAKLLLT-RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 786 ~~~v~~Ll~-~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
.+++++|++ .|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 232 ~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~--~~i~~~Ll~~Ga 277 (285)
T 1wdy_A 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL--KKIAELLCKRGA 277 (285)
T ss_dssp HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHHSS
T ss_pred HHHHHHHHhccCCCccccCCCCCcHHHHHHHcCc--HHHHHHHHHcCC
Confidence 999999999 899999999999999999999999 999999999885
No 64
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.79 E-value=2.2e-19 Score=185.55 Aligned_cols=155 Identities=23% Similarity=0.293 Sum_probs=131.0
Q ss_pred ceeehhhhcCchhhhHhhhhcccc----ccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCcccccccccc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEV----DVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLA 727 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~ga----dvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~ 727 (832)
..|+.|+..|+...|..+| ..+. ++|..+.. +.|++++++..++ ..+..+|+
T Consensus 10 t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~~~~---------------------g~t~L~~A~~~~~--~~~v~~Ll 65 (236)
T 1ikn_D 10 SFLHLAIIHEEKALTMEVI-RQVKGDLAFLNFQNNL---------------------QQTPLHLAVITNQ--PEIAEALL 65 (236)
T ss_dssp CTTHHHHHTTCSSSSSCCC-C-----CCCCCCCCTT---------------------CCCHHHHHHHTTC--HHHHHCCC
T ss_pred chhHHHHHcCChhHHHHHH-HHhhccHHHhhccCCC---------------------CCCHHHHHHHcCC--HHHHHHHH
Confidence 4588899999987665555 5443 67765544 3677777776654 44455677
Q ss_pred CCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 003309 728 GTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGAN------INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 801 (832)
Q Consensus 728 ~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gad------vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 801 (832)
..|++++..|..|.||||+|+..|+.+++++|+.+|++ ++..|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 66 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 145 (236)
T 1ikn_D 66 GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 145 (236)
T ss_dssp SCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC
T ss_pred HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 88999999999999999999999999999999999986 577888999999999999999999999999999999
Q ss_pred CCC-CCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 802 VNR-EGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 802 ~~~-~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
++. .|.||||+|+..|+ .++|++|+++|+
T Consensus 146 ~~~~~g~tpL~~A~~~~~--~~~v~~Ll~~ga 175 (236)
T 1ikn_D 146 QEPCNGRTALHLAVDLQN--PDLVSLLLKCGA 175 (236)
T ss_dssp CCTTTCCCHHHHHHHTTC--HHHHHHHHTTTC
T ss_pred CCCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 997 99999999999999 999999999874
No 65
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.79 E-value=4.2e-19 Score=193.90 Aligned_cols=177 Identities=18% Similarity=0.187 Sum_probs=134.5
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh----------------------------------------hhhhhhH
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV----------------------------------------SCISSLT 691 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~----------------------------------------~~~~~l~ 691 (832)
..|+.|+..|+.+ ++++|+++|+++|..+..+ ...++..
T Consensus 61 TpLh~A~~~g~~~-iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~ 139 (337)
T 4g8k_A 61 TPLHNAVQMSRED-IVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 139 (337)
T ss_dssp CHHHHHHHTTCHH-HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHH
T ss_pred CHHHHHHHcCCHH-HHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHH
Confidence 4688888888776 5566678898887654322 1122334
Q ss_pred HHHHhhhhccc---------------cCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCC----
Q 003309 692 LAKAMLLNEQT---------------SLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD---- 752 (832)
Q Consensus 692 ~~~~ll~~~~~---------------~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~---- 752 (832)
+++.++..+.+ ..+.||+++|+..++... +.+||...|++++..|..|.||||.++..+.
T Consensus 140 ~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~-v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~ 218 (337)
T 4g8k_A 140 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV-LKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 218 (337)
T ss_dssp HHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHH-HHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTH
T ss_pred HHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHH-HHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccH
Confidence 44444432221 234567777666554443 3334445788899999999999988776544
Q ss_pred HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 753 IGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR-GADPRAVNREGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 753 ~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
..++++|+++|+++|.+|..|+||||+|+..|+.+++++|+.. |++++.+|.+|.||||+|+..|+ .++|++|+++|
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~--~~iv~~Ll~~G 296 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL--KKIAELLCKRG 296 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC--HHHHHHHHTTS
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC--HHHHHHHHHCC
Confidence 4678899999999999999999999999999999999999985 89999999999999999999999 99999999988
Q ss_pred C
Q 003309 832 G 832 (832)
Q Consensus 832 g 832 (832)
+
T Consensus 297 A 297 (337)
T 4g8k_A 297 A 297 (337)
T ss_dssp C
T ss_pred C
Confidence 5
No 66
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.78 E-value=5.3e-19 Score=188.60 Aligned_cols=174 Identities=18% Similarity=0.151 Sum_probs=143.0
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhcc-----ccCCCCcccccccccCcc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQ-----TSLERSSSSLTGNSSDRS 719 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~-----~~~~~~~~~l~~~~~~~~ 719 (832)
..|+.|+..|+...|. .|++.|+++|..+..+ ...++..+++.|+..+. +..+.|++++++..++..
T Consensus 61 t~L~~Aa~~g~~~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~ 139 (285)
T 3d9h_A 61 SPMHEAAIHGHQLSLR-NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD 139 (285)
T ss_dssp CHHHHHHHTTCHHHHH-HHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred CHHHHHHHcCCHHHHH-HHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHH
Confidence 5688899999887665 4558899999877665 33456677777776433 345677888877766554
Q ss_pred ccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 003309 720 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 799 (832)
Q Consensus 720 ~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 799 (832)
. ..+|+..+++++..+ .|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|+++
T Consensus 140 ~--v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 216 (285)
T 3d9h_A 140 C--VNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 216 (285)
T ss_dssp H--HHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred H--HHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC
Confidence 4 445556777777654 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 800 RAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 800 ~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+. +..|.||||+|+..|+ .+++++|+++|+
T Consensus 217 ~~-~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga 246 (285)
T 3d9h_A 217 NQ-GKGQDSPLHAVVRTAS--EELACLLMDFGA 246 (285)
T ss_dssp TC-CBTTBCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred CC-CCCCCCHHHHHHHcCC--HHHHHHHHHCCC
Confidence 95 8899999999999998 999999999874
No 67
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.78 E-value=7.2e-19 Score=162.07 Aligned_cols=124 Identities=32% Similarity=0.457 Sum_probs=111.9
Q ss_pred CCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Q 003309 705 ERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRG 784 (832)
Q Consensus 705 ~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g 784 (832)
|.+++++++..+....+ ..|+..+++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v--~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVV--KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCHHHHHHHHTCHHHH--HHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CccHHHHHHHcCcHHHH--HHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence 45677777766554443 3455568889999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 785 KAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 785 ~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+.+++++|+++|++++.+|..|.|||++|+..|+ .+++++|+++|+
T Consensus 80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~--~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH--LEVVKLLLEAGA 125 (126)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCc--HHHHHHHHHcCC
Confidence 9999999999999999999999999999999998 999999999886
No 68
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.78 E-value=2e-19 Score=173.47 Aligned_cols=125 Identities=20% Similarity=0.190 Sum_probs=111.5
Q ss_pred cCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCc-HHHHHH
Q 003309 703 SLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLT-PLHRCI 781 (832)
Q Consensus 703 ~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~T-pLh~A~ 781 (832)
..+.+++++++..+.... ...|+..|++++..|..|.||||+|+ .|+.+++++|+++|++++.+|..|+| |||+|+
T Consensus 10 ~~~~t~L~~A~~~g~~~~--v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~ 86 (156)
T 1bi7_B 10 EPSADWLATAAARGRVEE--VRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA 86 (156)
T ss_dssp CCSTTHHHHHHHHTCHHH--HHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred ccchHHHHHHHHcCCHHH--HHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 445677777777665444 34455678999999999999999985 99999999999999999999999999 999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 782 LRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 782 ~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
..|+.+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 87 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~--~~~v~~Ll~~ga 135 (156)
T 1bi7_B 87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH--RDVARYLRAAAG 135 (156)
T ss_dssp HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTC--HHHHHHHSSCC-
T ss_pred HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCH--HHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999 999999999874
No 69
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.78 E-value=5.3e-19 Score=185.94 Aligned_cols=174 Identities=21% Similarity=0.220 Sum_probs=143.4
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhccc----cCCCCcccccccccCcc
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQT----SLERSSSSLTGNSSDRS 719 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~----~~~~~~~~l~~~~~~~~ 719 (832)
...|+.|+..|+.+.| ++|++.|+|+|..+..+ ...++..+++.++..+.. ..+.+++++++..++.
T Consensus 37 ~t~L~~A~~~g~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~- 114 (261)
T 2xai_A 37 VSPLHEACLGGHLSCV-KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHV- 114 (261)
T ss_dssp CCHHHHHHHHTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCH-
T ss_pred CCHHHHHHHcCCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcH-
Confidence 3568889998887755 55668899999887765 334566777777764433 3456777777665544
Q ss_pred ccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 003309 720 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 799 (832)
Q Consensus 720 ~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 799 (832)
....+|+..|++++..|..|.||||+|+..|+.+++++|+++|+++|. |..|+||||+|+..|+.+++++|+++|+++
T Consensus 115 -~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~ 192 (261)
T 2xai_A 115 -ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADT 192 (261)
T ss_dssp -HHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred -HHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCC
Confidence 445566778899999999999999999999999999999999999996 889999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 800 RAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 800 ~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+.+|..|.||||+|+..+. ++++|+++++
T Consensus 193 ~~~d~~g~tpl~~A~~~~~----~~~~ll~~~~ 221 (261)
T 2xai_A 193 QAKNAEGKRPVELVPPESP----LAQLFLEREG 221 (261)
T ss_dssp TCCCTTSCCGGGGSCTTCT----HHHHHHHC-C
T ss_pred CCcCCCCCChhhhcccccc----HHHHHHhccC
Confidence 9999999999999996654 9999998653
No 70
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.77 E-value=1.7e-18 Score=196.09 Aligned_cols=176 Identities=18% Similarity=0.244 Sum_probs=131.4
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhc-----cccCCCCcccccccccCcc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNE-----QTSLERSSSSLTGNSSDRS 719 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~-----~~~~~~~~~~l~~~~~~~~ 719 (832)
..|+.|+..++... +++|+..|++++..+..+ ...+++.+++.|+... .+..+.+++++++..++..
T Consensus 181 t~L~~A~~~~~~~~-v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~ 259 (437)
T 1n11_A 181 TPLHVAVHHNNLDI-VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259 (437)
T ss_dssp CHHHHHHHTTCHHH-HHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred CHHHHHHHcCCHHH-HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 45777777777654 455668888887765443 2345556667666532 3334566777666554433
Q ss_pred ccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 003309 720 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 799 (832)
Q Consensus 720 ~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 799 (832)
...+|+..+++++..+..|.||||+|+..|+.+++++|+++|+++|..|..|+||||+|+..|+.++|++|+++|+++
T Consensus 260 --~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~ 337 (437)
T 1n11_A 260 --MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337 (437)
T ss_dssp --HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT
T ss_pred --HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Confidence 344556678888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 800 RAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 800 ~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+.+|..|.||||+|+..|+ .++|++|+++|+
T Consensus 338 n~~~~~g~t~L~~A~~~g~--~~iv~~Ll~~ga 368 (437)
T 1n11_A 338 NAKTKLGYSPLHQAAQQGH--TDIVTLLLKNGA 368 (437)
T ss_dssp TCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHCCh--HHHHHHHHHCcC
Confidence 8888888888888888888 888888888764
No 71
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.77 E-value=2e-19 Score=191.96 Aligned_cols=175 Identities=14% Similarity=0.084 Sum_probs=139.7
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-----hhhhhhHHHHHhhhhcc-----ccCCCCcccccccccCcccc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-----SCISSLTLAKAMLLNEQ-----TSLERSSSSLTGNSSDRSSS 721 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-----~~~~~l~~~~~ll~~~~-----~~~~~~~~~l~~~~~~~~~~ 721 (832)
..|+.|+..|+.+.|. +|++.|+|+|..++.. ...+++.+++.|+..+. +..+.||+++++..++..
T Consensus 33 t~L~~A~~~g~~~~v~-~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~-- 109 (285)
T 3kea_A 33 SASYYAIADNNVRLVC-TLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQ-- 109 (285)
T ss_dssp CHHHHHHHTTCHHHHH-HHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH--
T ss_pred CHHHHHHHcCCHHHHH-HHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHH--
Confidence 5688899988887665 5558899999876432 33566677887776433 344667777777665444
Q ss_pred ccccccCCCCCCCcCCCCC-CcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 003309 722 GSLNLAGTSEGQTMDDLEG-CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR 800 (832)
Q Consensus 722 ~~lll~~~~~~~~~~d~~g-~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 800 (832)
+..+|+..|++++..|..| .||||+|+..|+.+++++|+++|+++... ..|+||||+|+..|+.+++++|+++|++++
T Consensus 110 ~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n 188 (285)
T 3kea_A 110 TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTN 188 (285)
T ss_dssp HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCC
Confidence 4445566688899999988 79999999999999999999999877332 278999999999999999999999999999
Q ss_pred CCCCCCCcH-HHHHHHcCCCcHHHHHHHhhCCC
Q 003309 801 AVNREGKTS-LELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 801 ~~~~~g~Tp-L~~A~~~g~~d~~iv~lLl~~gg 832 (832)
.+|..|.|| ||+|+..|+ .+++++|+++|+
T Consensus 189 ~~~~~g~t~~L~~A~~~~~--~~~v~~Ll~~ga 219 (285)
T 3kea_A 189 TNNSLLFIPDIKLAIDNKD--IEMLQALFKYDI 219 (285)
T ss_dssp TTCCCBCCTTHHHHHHHTC--HHHHHHHTTSCB
T ss_pred cccCCCCChHHHHHHHcCC--HHHHHHHHHcCC
Confidence 999999997 999999998 999999999874
No 72
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=99.77 E-value=5.7e-19 Score=155.02 Aligned_cols=92 Identities=25% Similarity=0.377 Sum_probs=71.5
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccc
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (832)
+.|+|||+|++ +..++|+||||||+ ++.|+||+++.+. ...
T Consensus 1 V~k~G~L~K~g-~~~k~WkkR~FvL~-~~~L~Yy~~~~~~-------------------------------------~~~ 41 (94)
T 2rsg_A 1 VERCGVLSKWT-NYIHGWQDRWVVLK-NNALSYYKSEDET-------------------------------------EYG 41 (94)
T ss_dssp CCEEEEEEEES-SSTTCEEEEEEEEE-TTEEEEESSTTGG-------------------------------------GTC
T ss_pred CCEEEEEEEeC-CCCCCceEEEEEEE-CCEEEEEEecccc-------------------------------------ccc
Confidence 36899999995 56779999999999 6778888765431 111
Q ss_pred ccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHH
Q 003309 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 373 ~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
+.+.+++..+.+... ...++||+|.+++|+|+|+|+|++|+++||.||+.|
T Consensus 42 ~~~~i~l~~~~~~~~---~~~~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 42 CRGSICLSKAVITPH---DFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp CSEEEETTTCEEEEC---SSCSSEEEEEETTEEEEEECCSSCCTHHHHHHHHHH
T ss_pred ceeeEecceeeeecC---cccceeEEEEeCCeEEEEECCCHHHHHHHHHHHHhh
Confidence 234566666666432 245799999999999999999999999999999987
No 73
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.77 E-value=1.3e-18 Score=161.70 Aligned_cols=95 Identities=22% Similarity=0.372 Sum_probs=73.9
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..++++|||+|++ ..++|+||||||+ ++.|+||+++.+.
T Consensus 6 ~~v~k~GwL~K~g--~~k~WkrRWfVLk-~~~L~yyk~~~~~-------------------------------------- 44 (130)
T 1v88_A 6 SGIVMADWLKIRG--TLKSWTKLWCVLK-PGVLLIYKTQKNG-------------------------------------- 44 (130)
T ss_dssp SSCCEEEEEEECC--SSSSCEEEEEEEE-TTEEEEESCSSSC--------------------------------------
T ss_pred CceEEEeEEEEeC--CCCCceEEEEEEE-CCEEEEECCCCCC--------------------------------------
Confidence 4568999999985 5678999999999 6788888776431
Q ss_pred ccccccccccccccccCCcccCCcceEEEecCC------------------------ceEEEEeCCHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPT------------------------KNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~------------------------rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
.+.+.|.|..|+|... ....++|||+|++|. ++|+|+|+|++|+++||.||+.|
T Consensus 45 -~p~G~I~L~~~~v~~~-~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a 122 (130)
T 1v88_A 45 -QWVGTVLLNACEIIER-PSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELA 122 (130)
T ss_dssp -CCCEEEECSSCEECCC-CTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHH
T ss_pred -CceEEEEcCCCEEEEC-CCCCCCeEEEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHH
Confidence 1235577777777532 333456999999864 35999999999999999999998
Q ss_pred HH
Q 003309 427 IA 428 (832)
Q Consensus 427 i~ 428 (832)
|.
T Consensus 123 ~~ 124 (130)
T 1v88_A 123 LK 124 (130)
T ss_dssp HT
T ss_pred Hh
Confidence 84
No 74
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=9.6e-19 Score=161.06 Aligned_cols=104 Identities=25% Similarity=0.481 Sum_probs=81.4
Q ss_pred CCcceeEEEEEEecCCCCCCCCceeEEEEeC-CceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCC
Q 003309 289 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDS-RGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH 367 (832)
Q Consensus 289 ~~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~-~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (832)
+...++++|||+|+++ ..+.|+||||||++ ++.|+||+++.+.
T Consensus 4 ~~~~~~~~G~L~K~~~-~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~----------------------------------- 47 (120)
T 2d9x_A 4 GSSGENVYGYLMKYTN-LVTGWQYRFFVLNNEAGLLEYFVNEQSR----------------------------------- 47 (120)
T ss_dssp CCSCCCCEEEEEEEEE-TTTEEEEEEEEECTTTCEEEEESSGGGS-----------------------------------
T ss_pred CCCCCcEEEEEEecCC-CCCCceEEEEEEECCCCEEEEEecCccc-----------------------------------
Confidence 3456789999999964 56789999999996 6899999876431
Q ss_pred CccccccccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 368 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 368 ~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
...+.+.|+|..+.|... .++++||+|++++ |+|+|+|+|++|+++||.+|+.+|......
T Consensus 48 --~~~~~g~I~L~~~~v~~~---~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 109 (120)
T 2d9x_A 48 --NQKPRGTLQLAGAVISPS---DEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEA 109 (120)
T ss_dssp --SSCCSEEEECTTCCEECC---SSSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCccceEEcceEEEEec---CCCCCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHHhhhh
Confidence 012335577777776542 2457999999997 999999999999999999999999766554
No 75
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.77 E-value=1.5e-18 Score=173.37 Aligned_cols=130 Identities=28% Similarity=0.342 Sum_probs=116.7
Q ss_pred hccccCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHH
Q 003309 699 NEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLH 778 (832)
Q Consensus 699 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh 778 (832)
+..+..+.|++++++..+....+. .|+..+++++..|..|.||||+|+..|+.+++++|+++|++++..|..|+||||
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~--~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 106 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAID--KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHH--HHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHH--HHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 334556678888888877655544 445568899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 779 RCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 779 ~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga 158 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR--SEIVKKLLELGA 158 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTC--HHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999 999999999874
No 76
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.77 E-value=1.2e-18 Score=169.66 Aligned_cols=124 Identities=23% Similarity=0.227 Sum_probs=111.0
Q ss_pred CCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Q 003309 705 ERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRG 784 (832)
Q Consensus 705 ~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g 784 (832)
+.++++.++..++... ...|+..+++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus 3 ~~t~L~~A~~~g~~~~--v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLY--LATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHHH--HHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHH--HHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 4566666666555444 44455667889999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 785 KAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 785 ~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+.+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~ 126 (167)
T 3v31_A 81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNH--VKCVKMLLESGA 126 (167)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 9999999999999999999999999999999998 999999999774
No 77
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.77 E-value=1.7e-18 Score=178.66 Aligned_cols=176 Identities=18% Similarity=0.224 Sum_probs=147.6
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhcc-----ccCCCCcccccccccCcc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQ-----TSLERSSSSLTGNSSDRS 719 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~-----~~~~~~~~~l~~~~~~~~ 719 (832)
..|+.|+..|+.+.| ++|++.|+++|..+..+ ...+++.+++.++..+. +..+.+++++++..+...
T Consensus 13 t~L~~A~~~g~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 91 (237)
T 3b7b_A 13 SPLHAAAEAGHVDIC-HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYE 91 (237)
T ss_dssp CHHHHHHHHTCHHHH-HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHH
T ss_pred CHHHHHHHcCcHHHH-HHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence 568889999988755 55668999999877654 33566677888876433 334567777766655433
Q ss_pred ccccccccCCC-CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 003309 720 SSGSLNLAGTS-EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 798 (832)
Q Consensus 720 ~~~~lll~~~~-~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 798 (832)
...+|+..+ .+++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++
T Consensus 92 --~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 169 (237)
T 3b7b_A 92 --VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169 (237)
T ss_dssp --HHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC
T ss_pred --HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 334444555 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 799 PRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 799 ~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 170 ~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga 201 (237)
T 3b7b_A 170 LHAVNIHGDSPLHIAARENR--YDCVVLFLSRDS 201 (237)
T ss_dssp TTCCCTTCCCHHHHHHHTTC--HHHHHHHHTTTC
T ss_pred CCCcCCCCCCHHHHHHHhCC--HhHHHHHHHcCC
Confidence 99999999999999999998 999999999874
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.76 E-value=1.4e-19 Score=186.56 Aligned_cols=142 Identities=20% Similarity=0.235 Sum_probs=112.9
Q ss_pred hhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHH
Q 003309 668 RHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLA 747 (832)
Q Consensus 668 ~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~A 747 (832)
+.|+..|++++..+..+ ..+.++++.++..+... ....|+..|++++..|..|.||||+|
T Consensus 2 ~~ll~~~~~~~~~~~~~------------------~~~~t~L~~A~~~g~~~--~v~~Ll~~g~~~~~~d~~g~tpLh~A 61 (229)
T 2vge_A 2 RSVLRKAGSPRKARRAR------------------LNPLVLLLDAALTGELE--VVQQAVKEMNDPSQPNEEGITALHNA 61 (229)
T ss_dssp --------CCCCCCCTT------------------SCHHHHHHHHHHHTCHH--HHHHHHHHSSCTTCCCTTSCCHHHHH
T ss_pred eehhccCCCCccccccc------------------cchhHHHHHHHHcCCHH--HHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 34568899988755433 11223444555554433 34445567889999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHH--HHcCCCcHHHH
Q 003309 748 CDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN-REGKTSLELA--VESNFADSEVL 824 (832)
Q Consensus 748 a~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~-~~g~TpL~~A--~~~g~~d~~iv 824 (832)
|..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+| +..|+ .+++
T Consensus 62 ~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~--~~~v 139 (229)
T 2vge_A 62 ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGY--ADCA 139 (229)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTH--HHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcCh--HHHH
Confidence 99999999999999999999999999999999999999999999999999999986 6999999999 88887 9999
Q ss_pred HHHhhCC
Q 003309 825 AILSDSH 831 (832)
Q Consensus 825 ~lLl~~g 831 (832)
++|+++|
T Consensus 140 ~~Ll~~g 146 (229)
T 2vge_A 140 TYLADVE 146 (229)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 9999865
No 79
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.76 E-value=6.8e-19 Score=195.39 Aligned_cols=177 Identities=18% Similarity=0.184 Sum_probs=146.4
Q ss_pred ceeehhhhcCchhhhHhhh-------hccccccccccchh-------hhhhhhHHHHHhhhhccc-----cCCCCccccc
Q 003309 652 HQIWEGVRTNDKKAVYRHI-------VNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQT-----SLERSSSSLT 712 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL-------~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~-----~~~~~~~~l~ 712 (832)
..|+.|+..|+.+.|..+| ++.|+|+|..+..+ ...++..+++.|+..+.+ ..+.++++++
T Consensus 127 t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A 206 (373)
T 2fo1_E 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA 206 (373)
T ss_dssp CHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHH
Confidence 5688899998887665444 48899999987765 335666788888774433 4566777777
Q ss_pred ccccCccccccccccCCC---CCCCcCCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCCCc--------cCCCCCcHHH
Q 003309 713 GNSSDRSSSGSLNLAGTS---EGQTMDDLEGCTLLHLACDSA---DIGMLELLLQYGANINA--------TDSRGLTPLH 778 (832)
Q Consensus 713 ~~~~~~~~~~~lll~~~~---~~~~~~d~~g~TpLh~Aa~~g---~~~~v~~Ll~~gadvn~--------~d~~g~TpLh 778 (832)
+..++... ..+|+..+ ++++..|..|.||||+|+..| +.+++++|+++|++++. .|..|+||||
T Consensus 207 ~~~g~~~~--v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh 284 (373)
T 2fo1_E 207 AANRDFGM--MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH 284 (373)
T ss_dssp HHTTCHHH--HHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHH
T ss_pred HHCCCHHH--HHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHH
Confidence 76654443 44455555 789999999999999999998 89999999999999986 6778999999
Q ss_pred HHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 779 RCILRGKAMFAKLLLTRG-ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 779 ~A~~~g~~~~v~~Ll~~g-ad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+|+..|+.++|++|+++| ++++.+|..|.||||+|+..|+ .++|++|+++|+
T Consensus 285 ~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~--~~iv~~Ll~~ga 337 (373)
T 2fo1_E 285 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR--IEVVMYLIQQGA 337 (373)
T ss_dssp HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC--HHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 999999999999999875 9999999999999999999999 999999999874
No 80
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.76 E-value=2.6e-18 Score=187.80 Aligned_cols=173 Identities=23% Similarity=0.259 Sum_probs=137.6
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhccc----------------------
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQT---------------------- 702 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~---------------------- 702 (832)
..|+.|+..++.+. +++|++.|+++|..+..+ ...++..+++.|+..+.+
T Consensus 93 t~L~~A~~~g~~~i-v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~ 171 (351)
T 3utm_A 93 VPLHNACSYGHYEV-TELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE 171 (351)
T ss_dssp CHHHHHHHTTCHHH-HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHH
T ss_pred cHHHHHHHCCCHHH-HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHH
Confidence 45777777776654 455557788888766543 223455666666553222
Q ss_pred -------------------------------------cCCCCcccccccccC-ccccccccccCCCCCCCcCCCCCCcHH
Q 003309 703 -------------------------------------SLERSSSSLTGNSSD-RSSSGSLNLAGTSEGQTMDDLEGCTLL 744 (832)
Q Consensus 703 -------------------------------------~~~~~~~~l~~~~~~-~~~~~~lll~~~~~~~~~~d~~g~TpL 744 (832)
..+.+++++++...+ .......+|+..|++++.+|..|.|||
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L 251 (351)
T 3utm_A 172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251 (351)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred HHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHH
Confidence 334577777766654 334556678889999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHH
Q 003309 745 HLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVL 824 (832)
Q Consensus 745 h~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv 824 (832)
|+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.||+++| + .+++
T Consensus 252 ~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~--~~~~ 325 (351)
T 3utm_A 252 HVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----N--EAVQ 325 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----C--HHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----h--HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 3 6788
Q ss_pred HHHhhCC
Q 003309 825 AILSDSH 831 (832)
Q Consensus 825 ~lLl~~g 831 (832)
++|.+.+
T Consensus 326 ~~l~~~~ 332 (351)
T 3utm_A 326 QILSEST 332 (351)
T ss_dssp HHHHHC-
T ss_pred HHHHhcc
Confidence 8888754
No 81
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.76 E-value=1.7e-18 Score=183.37 Aligned_cols=164 Identities=20% Similarity=0.166 Sum_probs=121.5
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhc------------------------
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNE------------------------ 700 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~------------------------ 700 (832)
..|+.|+..|+...| ++|++.|+|+|..+..+ ...++..+++.++...
T Consensus 47 t~L~~A~~~g~~~~v-~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (282)
T 1oy3_D 47 TALHLAAILGEASTV-EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125 (282)
T ss_dssp CHHHHHHHHTCHHHH-HHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------
T ss_pred CHHHHHHHcCCHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhc
Confidence 568889988887655 55568999999877654 2245556677766422
Q ss_pred ----------------------------cccCCCCcccccccccCccccccccccCCCCCCCcCCCC-CCcHHHHHHHcC
Q 003309 701 ----------------------------QTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLE-GCTLLHLACDSA 751 (832)
Q Consensus 701 ----------------------------~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~-g~TpLh~Aa~~g 751 (832)
.+..+.+++++++..++.. +..+|+..|++++..+.. |.||||+|+..|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~--~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~ 203 (282)
T 1oy3_D 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE--MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203 (282)
T ss_dssp ------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHH--HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred chhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHH--HHHHHHHcCCCCCCCCCCCCcCHHHHHHHcC
Confidence 2345677888777665544 444566788999998854 999999999999
Q ss_pred CHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 003309 752 DIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNF 818 (832)
Q Consensus 752 ~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~ 818 (832)
+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|.....
T Consensus 204 ~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 204 AASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred CHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999987643
No 82
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.4e-18 Score=156.36 Aligned_cols=102 Identities=24% Similarity=0.375 Sum_probs=80.3
Q ss_pred cceeEEEEEEecCCC-CCCCCceeEEEEeCCc-eEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCC
Q 003309 291 VQTIRQGYLSKRSSN-LRGDWKRRFFVLDSRG-MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD 368 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~-~~~~WkrRwfvL~~~~-~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (832)
..++++|||+|+++. ..+.|+||||||++++ .|+||+++.+.
T Consensus 6 ~~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~------------------------------------ 49 (119)
T 2dhk_A 6 SGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDA------------------------------------ 49 (119)
T ss_dssp SCCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCC------------------------------------
T ss_pred CCCcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCCCc------------------------------------
Confidence 456789999999763 5689999999999653 88888876431
Q ss_pred ccccccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 369 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 369 ~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
.+.+.|+|..+++... ...+++||+|+++.|+|+|+|+|++|+++||.+|+.++....+.
T Consensus 50 ---~~~g~I~L~~~~~~~~--~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 109 (119)
T 2dhk_A 50 ---NPLDSIDLSSAVFDCK--ADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHNS 109 (119)
T ss_dssp ---SCSEEEEGGGCEEEEC--TTGGGCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---ccccEEECCCCEEEec--CCCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHHhcCC
Confidence 1234577776665432 23457999999999999999999999999999999999876654
No 83
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=183.97 Aligned_cols=173 Identities=21% Similarity=0.217 Sum_probs=143.1
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhccc----cCCCCcccccccccCcc
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQT----SLERSSSSLTGNSSDRS 719 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~----~~~~~~~~l~~~~~~~~ 719 (832)
...|+.|+..++.+.| ++|++.|+++|..+..+ ...++..+++.|+..... ..+.+++++++..++..
T Consensus 93 ~t~L~~A~~~g~~~~v-~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~ 171 (285)
T 3d9h_A 93 VSPLHEACLGGHLSCV-KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVE 171 (285)
T ss_dssp CCHHHHHHHTTCHHHH-HHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHH
T ss_pred CCHHHHHHHCCcHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 3568889988887655 56668899999877664 334566777777764333 34567777777665544
Q ss_pred ccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 003309 720 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 799 (832)
Q Consensus 720 ~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 799 (832)
+..+|+..+++++..|..|.||||+|+..|+.+++++|+++|++++. |..|+||||+|+..|+.+++++|+++|+++
T Consensus 172 --~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~ 248 (285)
T 3d9h_A 172 --CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADT 248 (285)
T ss_dssp --HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred --HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 44556678899999999999999999999999999999999999995 889999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 800 RAVNREGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 800 ~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
+.+|.+|.||||+|+. + .+++++|+++.
T Consensus 249 ~~~d~~g~t~l~~A~~--~--~~~~~~Ll~~~ 276 (285)
T 3d9h_A 249 QAKNAEGKRPVELVPP--E--SPLAQLFLERE 276 (285)
T ss_dssp TCCCTTSCCGGGGSCT--T--SHHHHHHHHHC
T ss_pred CCcCCCCCCHHHHhcC--c--cHHHHHHHHhh
Confidence 9999999999999993 3 57999999874
No 84
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=177.22 Aligned_cols=176 Identities=20% Similarity=0.219 Sum_probs=139.9
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccch--------hhhhhhhHHHHHhhhhccc-----cCCCCcccccccccCc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQ--------VSCISSLTLAKAMLLNEQT-----SLERSSSSLTGNSSDR 718 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~--------~~~~~~l~~~~~ll~~~~~-----~~~~~~~~l~~~~~~~ 718 (832)
..|+.|+..++.+.| ++|++.|++++..... ....++..+++.++..+.. ..+.+++++++..+.
T Consensus 44 t~L~~A~~~~~~~~v-~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~- 121 (240)
T 3eu9_A 44 TLLHWAAINNRIDLV-KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH- 121 (240)
T ss_dssp CHHHHHHHTTCHHHH-HHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-
T ss_pred CHHHHHHHhCCHHHH-HHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCH-
Confidence 467778888877655 5556889988865433 1334566777777764332 345566666665544
Q ss_pred cccccccccCCCCCCCcCCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCCHHHHHHHHhCC
Q 003309 719 SSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD-IGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRG 796 (832)
Q Consensus 719 ~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~-~~~v~~Ll~~gadvn~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~g 796 (832)
......|+..+++++..+..|.||||+|+..++ .+++++|+..|++++..+. .|.||||+|+..|+.+++++|+++|
T Consensus 122 -~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 200 (240)
T 3eu9_A 122 -TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG 200 (240)
T ss_dssp -HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred -HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 344555667788999999999999999997766 7899999999999999887 8999999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 797 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 797 ad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
++++.+|..|.|||++|+..|+ .+++++|+++++
T Consensus 201 ~~~~~~~~~g~t~l~~A~~~~~--~~~v~~L~~~~~ 234 (240)
T 3eu9_A 201 ANVDAQNIKGESALDLAKQRKN--VWMINHLQEARQ 234 (240)
T ss_dssp CCTTCBCTTSCBHHHHHHHTTC--HHHHHHHHHHC-
T ss_pred CCCCCcCCCCCCHHHHHHHcCc--HHHHHHHHHhhh
Confidence 9999999999999999999998 999999998763
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.76 E-value=1.4e-18 Score=167.55 Aligned_cols=138 Identities=17% Similarity=0.091 Sum_probs=105.6
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCC
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS 730 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~ 730 (832)
...|+.|+..|+...|..|| +.|+++|..+..+ .++++++ . .+......+|+..|
T Consensus 13 ~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g---------------------~t~L~~A--~-~~~~~~v~~Ll~~g 67 (156)
T 1bi7_B 13 ADWLATAAARGRVEEVRALL-EAGANPNAPNSYG---------------------RRPIQVM--M-MGSARVAELLLLHG 67 (156)
T ss_dssp TTHHHHHHHHTCHHHHHHHH-TTTCCTTCCCSSS---------------------CCTTTSS--C-TTCHHHHHHHHTTT
T ss_pred hHHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCC---------------------CCHHHHH--H-cCCHHHHHHHHHcC
Confidence 45789999999988766555 8899999865543 6788775 2 44555666777889
Q ss_pred CCCCcCCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q 003309 731 EGQTMDDLEGCT-LLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS 809 (832)
Q Consensus 731 ~~~~~~d~~g~T-pLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~Tp 809 (832)
++++..|..|.| |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 68 ~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 147 (156)
T 1bi7_B 68 AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA 147 (156)
T ss_dssp CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred CCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 003309 810 LELA 813 (832)
Q Consensus 810 L~~A 813 (832)
.+-+
T Consensus 148 ~~~~ 151 (156)
T 1bi7_B 148 AEGP 151 (156)
T ss_dssp ----
T ss_pred cccC
Confidence 8744
No 86
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.75 E-value=3.9e-18 Score=161.65 Aligned_cols=97 Identities=15% Similarity=0.254 Sum_probs=72.2
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
.+++|+|||+|+++. .++|+||||||++ ..|+||+++.+..
T Consensus 16 ~pv~keG~L~Kkg~~-~k~WkrRWFvLk~-~~L~Yyk~~~d~~------------------------------------- 56 (149)
T 1x1f_A 16 LPLYFEGFLLIKRSG-YREYEHYWTELRG-TTLFFYTDKKSII------------------------------------- 56 (149)
T ss_dssp SCEEEEEEEEEECTT-CCSCEEEEEEEET-TEEEEESCSSCSS-------------------------------------
T ss_pred CCccEEEEEEEeCCC-CCCceeEEEEEcC-CEEEEEeCCCccc-------------------------------------
Confidence 458999999999654 5799999999995 5677776654311
Q ss_pred cccccccccccccccc-CCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKV-DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~-~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
+.+.|+|..+++.. ......+++||+|++++|+|+|+|+|++||++||.||+.++.
T Consensus 57 --~~g~I~L~~~~~~~~~~~~~~~~~~F~I~t~~r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 57 --YVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp --CSEECCCSSCCEEEECCCTTSCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred --cCcEEECCCceEEeeccCCCCcCcEEEEEcCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 12345555555431 111223579999999999999999999999999999998865
No 87
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.75 E-value=3e-18 Score=167.51 Aligned_cols=121 Identities=30% Similarity=0.408 Sum_probs=108.1
Q ss_pred cccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHH
Q 003309 708 SSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAM 787 (832)
Q Consensus 708 ~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~ 787 (832)
+++.|+..+ .......|+..|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+
T Consensus 17 ~l~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 94 (169)
T 2y1l_E 17 KLLEAARAG--RDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLE 94 (169)
T ss_dssp HHHHHHHHT--CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred hHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Confidence 334444443 334445566778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 788 FAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 788 ~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
++++|+++|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 95 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~ 137 (169)
T 2y1l_E 95 IVEVLLKNGADVNANDMEGHTPLHLAAMFGH--LEIVEVLLKNGA 137 (169)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 9999999999999999999999999999999 999999999874
No 88
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.75 E-value=2.3e-19 Score=168.91 Aligned_cols=125 Identities=26% Similarity=0.343 Sum_probs=106.7
Q ss_pred cCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Q 003309 703 SLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCIL 782 (832)
Q Consensus 703 ~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~ 782 (832)
..+.+++++++..++... ...|+..|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 8 ~~g~t~L~~A~~~~~~~~--~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 85 (137)
T 3c5r_A 8 HRGETLLHIASIKGDIPS--VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85 (137)
T ss_dssp TTCCCHHHHHHHHTCHHH--HHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHH--HHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence 345678888777665444 344556788999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 783 RGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 783 ~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
.|+.+++++|+++|++++.+|..|.|||++|+..++ .+++.+|.+.+
T Consensus 86 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~--~~~l~~l~~~~ 132 (137)
T 3c5r_A 86 NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESM--KSLLLLPEKNE 132 (137)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHH--HHHHSCC----
T ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccH--HHHHhhccccc
Confidence 999999999999999999999999999999998877 78888776643
No 89
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=5.9e-18 Score=158.01 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=72.2
Q ss_pred CCcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCC-CCCCCCCCccccCcCccCCCccccccccccCCCCC
Q 003309 289 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSK-SSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH 367 (832)
Q Consensus 289 ~~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (832)
+...++++|||+|+++ ..+.||||||||..++.|+||+++.+. +.|.+ . .
T Consensus 4 ~~~~v~~~G~L~K~g~-~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g~i----------------~---------l--- 54 (130)
T 2d9v_A 4 GSSGLVRGGWLWRQSS-ILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV----------------V---------I--- 54 (130)
T ss_dssp SCCCEEEEEEEEEECS-SSCCEEEEEEEEETTTEEEEESSSSTTSEEEEE----------------E---------C---
T ss_pred CCCceeEEEEEEeecC-ccCCceeeEEEEccCCEEEEEeCCCCCCcCceE----------------e---------c---
Confidence 4456789999999954 567999999999447899999876532 11110 0 0
Q ss_pred Ccccccccccccc-ccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 368 DEKSAARHTVNLL-TSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 368 ~~~~~~~~~i~l~-~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
......|.+. .|.....++...++|||+|++++ |+|+|+|+|++||++||.||+.++.
T Consensus 55 ---~~~~~~i~~~~~~~~v~~~~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~ 114 (130)
T 2d9v_A 55 ---HFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANS 114 (130)
T ss_dssp ---TTTEEEEEEGGGCSSCCCCSSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ---ccceeEEeccccccccCCCCCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 0000001100 11111123344678999999955 9999999999999999999999874
No 90
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.75 E-value=2.2e-18 Score=159.27 Aligned_cols=100 Identities=26% Similarity=0.511 Sum_probs=71.4
Q ss_pred eEEEEEEecCCCCCCCCceeEEEEeC--CceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 294 IRQGYLSKRSSNLRGDWKRRFFVLDS--RGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 294 ~k~G~L~K~~~~~~~~WkrRwfvL~~--~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
.++|||.|+++...+.|+||||||+. +.+||||+++.+.+.+ .
T Consensus 16 ~~~G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~-----------------------------------~ 60 (126)
T 1v5p_A 16 RICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVG-----------------------------------A 60 (126)
T ss_dssp CEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTT-----------------------------------C
T ss_pred ceEEEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCCCC-----------------------------------c
Confidence 47999999975667899999999993 5688888874321111 1
Q ss_pred cccccccccc-cccccCC--cccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLT-STIKVDA--DQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 372 ~~~~~i~l~~-~~v~~~~--~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.+.+.|.|.. +.|.... ...+++|||.|.++.|+|+|+|+|++||++||.+|+.|+.
T Consensus 61 ~~~G~I~L~~~~~V~~~~~~~~~~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~a~~ 120 (126)
T 1v5p_A 61 GAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASK 120 (126)
T ss_dssp CCSEEEETTTCCEEEECCTTTSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred eeeEEEECCCccEEecCCcccCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 1223344443 2232211 2336689999999999999999999999999999997753
No 91
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.75 E-value=4e-18 Score=153.51 Aligned_cols=94 Identities=17% Similarity=0.251 Sum_probs=75.1
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCC--ceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSR--GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~--~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
.+++|||+|+.+ .+.|+||||||.++ ..||||+++.+.
T Consensus 8 ~~~~G~L~k~~~--~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~-------------------------------------- 47 (112)
T 2coc_A 8 SLLCGPLRLSES--GETWSEVWAAIPMSDPQVLHLQGGSQDG-------------------------------------- 47 (112)
T ss_dssp SSSEEEEEEESS--SSCEEEEEEECCTTCTTCEEEECCTTCS--------------------------------------
T ss_pred ceEEEEEEecCC--CCCceEEEEEEECCCccEEEEECCCCcc--------------------------------------
Confidence 456899999743 67899999999965 489999876441
Q ss_pred cccccccccccccccc--CCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKV--DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~--~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
.+.+.|.|..|+|.. +.+..+++|||+|+++.++|+|+|+|+++|++||.+|+.|+
T Consensus 48 -~p~g~I~L~g~~V~~~~~~~~~~~~~~Fki~~~~~~y~f~A~s~e~~~~Wl~al~~A~ 105 (112)
T 2coc_A 48 -RLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTAA 105 (112)
T ss_dssp -SSCSEECGGGCEEECCCSSSCCSSSEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred -CcceEEEcCCCEEEecCcccccCCCCEEEEecCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 122457788888873 23445688999999999999999999999999999999875
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.75 E-value=5.6e-18 Score=159.37 Aligned_cols=100 Identities=28% Similarity=0.378 Sum_probs=93.7
Q ss_pred CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q 003309 730 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS 809 (832)
Q Consensus 730 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~Tp 809 (832)
|+++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence 4556 678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcHHHHHHHhhCCC
Q 003309 810 LELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 810 L~~A~~~g~~d~~iv~lLl~~gg 832 (832)
||+|+..|+ .+++++|+++|+
T Consensus 80 L~~A~~~~~--~~~v~~Ll~~ga 100 (137)
T 3c5r_A 80 LHDAAKNGH--VDIVKLLLSYGA 100 (137)
T ss_dssp HHHHHHTTC--HHHHHHHHHTTC
T ss_pred HHHHHHcCC--HHHHHHHHHcCC
Confidence 999999999 999999999874
No 93
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.75 E-value=1.4e-18 Score=185.32 Aligned_cols=169 Identities=12% Similarity=0.071 Sum_probs=139.0
Q ss_pred hhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhccc---cCCCCcccccccccCcccccccc
Q 003309 656 EGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQT---SLERSSSSLTGNSSDRSSSGSLN 725 (832)
Q Consensus 656 ~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~---~~~~~~~~l~~~~~~~~~~~~ll 725 (832)
.++...+...|.++|... ++|..+..+ ...+++.+++.|+..+.+ .++.||+++++..++.. ...+
T Consensus 5 s~i~~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~--~v~~ 80 (285)
T 3kea_A 5 SRINTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTK--IVKI 80 (285)
T ss_dssp TTGGGCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCH--HHHH
T ss_pred HHHHhcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHH--HHHH
Confidence 467888999999999765 567766654 335666778888775433 24677887777665544 4445
Q ss_pred ccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC-CcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 003309 726 LAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRG-LTPLHRCILRGKAMFAKLLLTRGADPRAVNR 804 (832)
Q Consensus 726 l~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g-~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~ 804 (832)
|+..|++++..|..|.||||+|+..|+.+++++|+++|++++..|..| .||||+|+..|+.+++++|+++|+++... .
T Consensus 81 Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~ 159 (285)
T 3kea_A 81 LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-A 159 (285)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-S
T ss_pred HHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-c
Confidence 667799999999999999999999999999999999999999999999 79999999999999999999999887332 2
Q ss_pred CCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 805 EGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 805 ~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
.|.||||+|+..|+ .+++++|+++|
T Consensus 160 ~g~t~L~~A~~~g~--~~~v~~Ll~~g 184 (285)
T 3kea_A 160 ILLSCIHITIKNGH--VDMMILLLDYM 184 (285)
T ss_dssp THHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred CCccHHHHHHHcCh--HHHHHHHHHcC
Confidence 88999999999999 99999999865
No 94
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.75 E-value=5.5e-18 Score=167.28 Aligned_cols=124 Identities=26% Similarity=0.280 Sum_probs=109.6
Q ss_pred CCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC
Q 003309 706 RSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK 785 (832)
Q Consensus 706 ~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~ 785 (832)
.++++.++..++...+ ..++...+.+++..|..|.||||+||..|+.+++++|+++|++++..|..|+||||+|+..|+
T Consensus 6 ~~~l~~A~~~g~~~~v-~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 6 MDDIFTQCREGNAVAV-RLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp -CCHHHHHHHTCHHHH-HHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHH-HHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 4555555555544443 344555678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 786 AMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 786 ~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
.+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 85 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~--~~~v~~Ll~~ga 129 (179)
T 3f6q_A 85 RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ--DQVAEDLVANGA 129 (179)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC--HHHHHHHHHCCC
Confidence 999999999999999999999999999999999 999999999874
No 95
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.74 E-value=5.9e-18 Score=179.00 Aligned_cols=154 Identities=26% Similarity=0.274 Sum_probs=132.6
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
..|+.|+..|+.+.|..+| +.|+++|.... ..+.+++++++..++.. ...+|+..|+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~--------------------~~g~t~L~~A~~~g~~~--~v~~Ll~~g~ 63 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL-EGGANVNFQEE--------------------EGGWTPLHNAVQMSRED--IVELLLRHGA 63 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH-HTTCCTTCCCT--------------------TTCCCHHHHHHHTTCHH--HHHHHHHTTC
T ss_pred hHHHHHHHcCCHHHHHHHH-HcCCCcccccC--------------------CCCCcHHHHHHHcCCHH--HHHHHHHcCC
Confidence 4578899999988765554 88999987522 22456777776665444 4455667789
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC---------
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV--------- 802 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~--------- 802 (832)
+++..|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..
T Consensus 64 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~ 143 (285)
T 1wdy_A 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER 143 (285)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHH
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -CCCCCcHHHHHHHcCCCcHHHHHHHhhC
Q 003309 803 -NREGKTSLELAVESNFADSEVLAILSDS 830 (832)
Q Consensus 803 -~~~g~TpL~~A~~~g~~d~~iv~lLl~~ 830 (832)
+..|.||||+|+..|+ .+++++|++.
T Consensus 144 ~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ 170 (285)
T 1wdy_A 144 LRKGGATALMDAAEKGH--VEVLKILLDE 170 (285)
T ss_dssp TTCCCCCHHHHHHHHTC--HHHHHHHHHT
T ss_pred hccCCCcHHHHHHHcCC--HHHHHHHHHh
Confidence 7889999999999999 9999999986
No 96
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.74 E-value=5e-18 Score=166.23 Aligned_cols=124 Identities=21% Similarity=0.188 Sum_probs=107.0
Q ss_pred CCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC
Q 003309 706 RSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK 785 (832)
Q Consensus 706 ~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~ 785 (832)
.++++.++..++...+.. ++...+..++..|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~-ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKE-HLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp -CCHHHHHHTTCHHHHHH-HHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred hhhHHHHHHcCCHHHHHH-HHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 355666665555444333 2333333488889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 786 AMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 786 ~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
.+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga 126 (172)
T 3v30_A 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNH--VKCVEALLARGA 126 (172)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 999999999999999999999999999999999 999999999874
No 97
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.74 E-value=7.1e-18 Score=190.98 Aligned_cols=177 Identities=25% Similarity=0.340 Sum_probs=142.5
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhccc-----cCCCCcccccccccCc
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQT-----SLERSSSSLTGNSSDR 718 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~-----~~~~~~~~l~~~~~~~ 718 (832)
...|+.|+..|+.+.| ++|++.|+++|..+..+ ...++..++++|+..+.+ ..+.+++++++..++.
T Consensus 48 ~t~L~~A~~~g~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~ 126 (437)
T 1n11_A 48 ETPLHMAARAGHTEVA-KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 126 (437)
T ss_dssp CCHHHHHHHHTCHHHH-HHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred CCHHHHHHHcCCHHHH-HHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Confidence 3567888888877755 55568899998876654 335666778888764433 4466777777766654
Q ss_pred cccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 003309 719 SSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 798 (832)
Q Consensus 719 ~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 798 (832)
.. ...|+..+++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 127 ~~--v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 204 (437)
T 1n11_A 127 ET--VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204 (437)
T ss_dssp HH--HHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC
T ss_pred HH--HHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 44 3445566778888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 799 PRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 799 ~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
++..+..|.||||+|+..|+ .+++++|++.|+
T Consensus 205 ~~~~~~~g~t~L~~A~~~~~--~~~~~~Ll~~g~ 236 (437)
T 1n11_A 205 PHSPAWNGYTPLHIAAKQNQ--VEVARSLLQYGG 236 (437)
T ss_dssp SCCCCTTCCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred CCCcCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 99999999999999999988 899999998764
No 98
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.74 E-value=3e-18 Score=165.79 Aligned_cols=121 Identities=21% Similarity=0.183 Sum_probs=107.5
Q ss_pred CcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCH
Q 003309 707 SSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA 786 (832)
Q Consensus 707 ~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~ 786 (832)
++++.++..++. .....|+..+++++..|..|.||||+|+. |+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 7 ~~L~~A~~~g~~--~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 7 NELASAAARGDL--EQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp HHHHHHHHHTCH--HHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred hHHHHHHHcCCH--HHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 344455544433 34444557889999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 787 MFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 787 ~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~ 127 (162)
T 1ihb_A 84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH--LRVVEFLVKHTA 127 (162)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC--HHHHHHHHHccC
Confidence 99999999999999999999999999999999 999999998764
No 99
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.74 E-value=8.9e-18 Score=151.72 Aligned_cols=96 Identities=23% Similarity=0.400 Sum_probs=74.5
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..++++|||+|+++ ..+.|+||||||+ ++.|+||+++.+.
T Consensus 6 ~~~~~~G~L~K~~~-~~~~Wk~RwfvL~-~~~L~yyk~~~~~-------------------------------------- 45 (109)
T 1wgq_A 6 SGSTMSGYLYRSKG-SKKPWKHLWFVIK-NKVLYTYAASEDV-------------------------------------- 45 (109)
T ss_dssp CSCSCEEEEEEESS-TTSCCEEEEEEEE-TTEEEEESCTTCS--------------------------------------
T ss_pred CCCeEEEEEEeCCC-CCCCceeEEEEEe-CCEEEEECCCCcC--------------------------------------
Confidence 34578999999954 4678999999999 6888888775431
Q ss_pred ccccccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
.+.+.|.|..+.+....+...++|||+|++++ ++|+|+|+|++|+++||.+|+.++
T Consensus 46 -~~~~~i~L~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a~ 102 (109)
T 1wgq_A 46 -AALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGT 102 (109)
T ss_dssp -SCSEEEECSSEEEEECCCSSCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred -ccCceEECCCCEEEECCCCCCCCcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 12244677767665444444567999999886 789999999999999999999886
No 100
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.74 E-value=1.2e-17 Score=162.40 Aligned_cols=123 Identities=24% Similarity=0.221 Sum_probs=107.6
Q ss_pred CcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCH
Q 003309 707 SSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA 786 (832)
Q Consensus 707 ~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~ 786 (832)
++++.++..++...+. .++...+.+++..+..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.
T Consensus 10 ~~l~~A~~~g~~~~v~-~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 88 (165)
T 3twr_A 10 RQLLEAAKAGDVETVK-KLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHY 88 (165)
T ss_dssp HHHHHHHHHTCHHHHH-HHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHhCCHHHHH-HHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcH
Confidence 4455555554444433 334446678888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 787 MFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 787 ~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 89 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga 132 (165)
T 3twr_A 89 EVAELLVKHGAVVNVADLWKFTPLHEAAAKGK--YEICKLLLQHGA 132 (165)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 99999999999999999999999999999999 999999999874
No 101
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.74 E-value=4.9e-18 Score=163.01 Aligned_cols=105 Identities=31% Similarity=0.365 Sum_probs=97.1
Q ss_pred cccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 003309 725 NLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNR 804 (832)
Q Consensus 725 ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~ 804 (832)
.|+..|++++ .|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 20 ~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 98 (153)
T 1awc_B 20 ILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM 98 (153)
T ss_dssp HHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred HHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCC
Confidence 3444555555 578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 805 EGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 805 ~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
.|.||||+|+..|+ .+++++|+++|+
T Consensus 99 ~g~t~L~~A~~~~~--~~~v~~Ll~~ga 124 (153)
T 1awc_B 99 LKMTALHWATEHNH--QEVVELLIKYGA 124 (153)
T ss_dssp TSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 99999999999999 999999999874
No 102
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.74 E-value=1.6e-17 Score=150.99 Aligned_cols=99 Identities=25% Similarity=0.447 Sum_probs=76.2
Q ss_pred ceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
.++++|||+|+++ ..+.|+||||||. ++.|+||+++.+.
T Consensus 4 ~~~~~G~L~K~g~-~~~~Wk~R~fvL~-~~~L~yy~~~~~~--------------------------------------- 42 (113)
T 1pls_A 4 KRIREGYLVKKGS-VFNTWKPMWVVLL-EDGIEFYKKKSDN--------------------------------------- 42 (113)
T ss_dssp CCSEEEEEEEESS-SSSCCEEEEEEEE-TTEEEEESSTTCS---------------------------------------
T ss_pred CCcEEEEEEEeCC-CCCCceEEEEEEE-CCEEEEEeCCCCC---------------------------------------
Confidence 4578999999954 5678999999999 5677787765321
Q ss_pred ccccccccccccccc-CCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIKV-DADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~-~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
.+.+.|.|..+++.. ..+...++|||+|++++ |+|+|+|+|++|+++||.+|+.+|....
T Consensus 43 ~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~ 104 (113)
T 1pls_A 43 SPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCIE 104 (113)
T ss_dssp SCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred CcceEEEcCCCEEEEecCCCCCCccEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHhccc
Confidence 122446666666542 23445678999999986 8999999999999999999999997654
No 103
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=172.34 Aligned_cols=176 Identities=19% Similarity=0.243 Sum_probs=147.6
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhcccc------CCCCcccccccccCc
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQTS------LERSSSSLTGNSSDR 718 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~~------~~~~~~~l~~~~~~~ 718 (832)
..|+.|+..|+.+.+..+| +.|+|+|..+..+ ...+++.+++.++...... .+.+++++++..+..
T Consensus 11 ~~l~~A~~~g~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~ 89 (240)
T 3eu9_A 11 WDIVKATQYGIYERCRELV-EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89 (240)
T ss_dssp CCHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred hHHHHHHHcCChHHHHHHH-HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence 5688999999988775554 8899999876654 3346677888887644432 256777777766554
Q ss_pred cccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC-HHHHHHHHhCCC
Q 003309 719 SSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK-AMFAKLLLTRGA 797 (832)
Q Consensus 719 ~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~-~~~v~~Ll~~ga 797 (832)
. ...+|+..|++++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++ .+++++|++.|+
T Consensus 90 ~--~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~ 167 (240)
T 3eu9_A 90 S--MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV 167 (240)
T ss_dssp H--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTC
T ss_pred H--HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCC
Confidence 4 3445667799999999999999999999999999999999999999999999999999997776 899999999999
Q ss_pred CCCCCCC-CCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 798 DPRAVNR-EGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 798 d~~~~~~-~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
+++..+. .|.||||+|+..|+ .+++++|+++|+
T Consensus 168 ~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~ 201 (240)
T 3eu9_A 168 SVNLGDKYHKNTALHWAVLAGN--TTVISLLLEAGA 201 (240)
T ss_dssp CTTCCCTTTCCCHHHHHHHHTC--HHHHHHHHHHTC
T ss_pred CcchhhccCCCcHHHHHHHcCC--HHHHHHHHHcCC
Confidence 9999987 89999999999999 999999999764
No 104
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.73 E-value=9.9e-19 Score=190.42 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=20.0
Q ss_pred CCCCcCCCCCCcHHHHHHH----cCCHHHHHHHHHc
Q 003309 731 EGQTMDDLEGCTLLHLACD----SADIGMLELLLQY 762 (832)
Q Consensus 731 ~~~~~~d~~g~TpLh~Aa~----~g~~~~v~~Ll~~ 762 (832)
++++..|..|+||||+|+. .|+.+++++|++.
T Consensus 192 ~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~ 227 (327)
T 1sw6_A 192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI 227 (327)
T ss_dssp GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence 4556666666666666666 5666666666655
No 105
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=99.73 E-value=9.7e-18 Score=156.11 Aligned_cols=111 Identities=22% Similarity=0.361 Sum_probs=78.4
Q ss_pred cceeEEEEEEec----CC-CCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCC
Q 003309 291 VQTIRQGYLSKR----SS-NLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG 365 (832)
Q Consensus 291 ~~~~k~G~L~K~----~~-~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (832)
..+.|+|||.|+ ++ ..+++|++|||||+ ++.|+||+++.....+..
T Consensus 10 ~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~-~~~L~yykd~~~~~~~~~---------------------------- 60 (129)
T 2p0d_A 10 HEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLT-GNSLVFYREPPPTAPSSG---------------------------- 60 (129)
T ss_dssp CSEEEEEEEEEEEEEETTEECCCCCEEEEEEEE-SSEEEEESCC------------------------------------
T ss_pred cceeEEEEEEEeeeccCCCcCCCCceEEEEEEe-CCEEEEEcCccccccccc----------------------------
Confidence 467899999985 23 34589999999999 566677776542111100
Q ss_pred CCCccccccccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 366 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 366 ~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
.......+.+.|+|..|++....+...++|||+|.+++ ++|+|||+|++||++||.+|+.+|...
T Consensus 61 ~~~~~~~p~g~I~L~~~~v~~~~~~~kr~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~ 126 (129)
T 2p0d_A 61 WGPAGSRPESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIERL 126 (129)
T ss_dssp ------CCSEEEECTTCEEEECTTSCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCccEEEeCCcEEEECCCCCCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 00011234466888888876655556788999999986 789999999999999999999999754
No 106
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.73 E-value=7.2e-18 Score=155.90 Aligned_cols=105 Identities=23% Similarity=0.394 Sum_probs=77.0
Q ss_pred cceeEEEEEEecCCC-------CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccC
Q 003309 291 VQTIRQGYLSKRSSN-------LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYH 363 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~-------~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (832)
..+.++|||+|++.. ..+.|++|||||+ ++.|+||+++.+...+.
T Consensus 6 ~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~-~~~L~yyk~~~~~~~~~--------------------------- 57 (123)
T 1wjm_A 6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLR-RGSLGFYKDAKAASAGV--------------------------- 57 (123)
T ss_dssp CCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEE-TTEEEEESSHHHHTTTC---------------------------
T ss_pred CCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEE-CCEEEEEEcccccccCc---------------------------
Confidence 456799999998531 2678999999999 56778887754321110
Q ss_pred CCCCCccccccccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 364 GGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 364 ~~~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
...+...|++..|.+....+...|+|||+|++++ ++|+|||+|++||++||.+|+.+|..
T Consensus 58 ------~~~~~~~i~l~~~~~~~~~~~~~r~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~ 118 (123)
T 1wjm_A 58 ------PYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIAS 118 (123)
T ss_dssp ------BSSSCCCEECTTCEEEECTTCSSCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ------ccCCCceEEccCcEEeecccccCCCCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 0011123566656665544556789999999887 99999999999999999999999873
No 107
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=99.73 E-value=1.7e-16 Score=163.66 Aligned_cols=191 Identities=17% Similarity=0.245 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------cc--------c-hhHHHHHHHHHHhhCCCCCCCccc
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLG-------------EG--------Y-DGDIAFASALETFGGGHNDPISVA 72 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~-------------~~--------~-~~~~~f~~~l~~f~~~~~~~~~~~ 72 (832)
-+..+|.+++.+++++.+|+|.++.|.+.-. +. + .....++.++.+.+....+..
T Consensus 16 d~~~lE~r~d~~~~~~~~l~k~~~~yl~pn~~~r~~~~~~~~i~k~~~~~k~~~~~~~~~~L~~~m~~~~~~l~~ds--- 92 (240)
T 2z0v_A 16 EFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLKYGKELGEDS--- 92 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHTCCCCCCSSCCCCCCSSCCHHHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHhhcCCCc---
Confidence 4678999999999999999999999976310 11 1 112456777755554332221
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHh
Q 003309 73 FGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAA 152 (832)
Q Consensus 73 ~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~ 152 (832)
..|.+|.+||.++++|...+..+..++...|++||.+|++.||+.+.+.||++++.+.+||++..|+.+
T Consensus 93 ~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~~k----------- 161 (240)
T 2z0v_A 93 TFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGK----------- 161 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTTS-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------
Confidence 246899999999999999999999999999999999999999999999999999999999999888633
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003309 153 ILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVL 220 (832)
Q Consensus 153 e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~ 220 (832)
..+.++..++..|..+.-+++..|..+... ++++++.|..||.+|..||++|+++|.++.|++....
T Consensus 162 ~~eeEl~~A~~~fe~~~e~~~~~m~~~~~~-~~e~l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~~~~ 228 (240)
T 2z0v_A 162 IPDEEVRQAVEKFEESKELAERSMFNFLEN-DVEQVSQLAVFIEAALDYHRQSTEILQELQSKLQMRI 228 (240)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHS-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124567777788888888888888888766 5899999999999999999999999999999987654
No 108
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=151.14 Aligned_cols=101 Identities=23% Similarity=0.444 Sum_probs=76.9
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..++++|||+|+++ ..+.|+||||||. ++.|+||+++.+.
T Consensus 6 ~~~~~~G~L~K~~~-~~~~Wk~R~fvL~-~~~L~yy~~~~~~-------------------------------------- 45 (115)
T 2dn6_A 6 SGVLKQGYMMKKGH-RRKNWTERWFVLK-PNIISYYVSEDLK-------------------------------------- 45 (115)
T ss_dssp CSCSEEEEEEEECT-TSSCEEEEEEEEC-SSCEEEESSTTCS--------------------------------------
T ss_pred CCceEEEEEEecCC-CCCCcEEeEEEEE-CCEEEEeCCCCCc--------------------------------------
Confidence 45689999999965 5678999999999 5677888765321
Q ss_pred cccccccccccc-ccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHHHc
Q 003309 371 SAARHTVNLLTS-TIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS 432 (832)
Q Consensus 371 ~~~~~~i~l~~~-~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 432 (832)
.+.+.|.|..+ .|...++...+++||+|++++|+|+|+|+|++|+++||.+|+.+|...-+
T Consensus 46 -~~~g~i~L~~~~~v~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~~ 107 (115)
T 2dn6_A 46 -DKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKL 107 (115)
T ss_dssp -SEEEEECCCTTCEEEEECCCTTCCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCcEEEecCcEEEEECCCCCCCeeEEEEEeCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhc
Confidence 12344555543 34333334456899999999999999999999999999999999976544
No 109
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.73 E-value=3.5e-18 Score=181.40 Aligned_cols=152 Identities=17% Similarity=0.159 Sum_probs=128.1
Q ss_pred eehhhhcCchhhhHhhhhccccc--cccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCC
Q 003309 654 IWEGVRTNDKKAVYRHIVNFEVD--VNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 654 L~~Av~~~d~~~v~~lL~~~gad--vN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
++.|+..++...+..++ ..+++ +|..+. .|.|++++++..++... ..+|+..|+
T Consensus 80 l~~a~~~~~~~~~~~l~-~~~~~~~~n~~d~---------------------~g~T~Lh~A~~~g~~~~--v~~Ll~~g~ 135 (276)
T 4hbd_A 80 AHPELVRRHLVTFRAMS-ARLLDYVVNIADS---------------------NGNTALHYSVSHANFPV--VQQLLDSGV 135 (276)
T ss_dssp CCHHHHHHHHHHHHHHC-HHHHHHHHTCCCT---------------------TSCCHHHHHHHTTCHHH--HHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHHH-HHHHhhcCcCCCC---------------------CCCCHHHHHHHCCCHHH--HHHHHHCCC
Confidence 56788788877776655 55554 555444 45788888776655443 444556666
Q ss_pred -CCCcCCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q 003309 732 -GQTMDDLEGCTLLHLAC-----DSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNRE 805 (832)
Q Consensus 732 -~~~~~d~~g~TpLh~Aa-----~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~ 805 (832)
+++..|..|.||||+|+ ..++.+++++|+..|++++..|..|+||||+|+..|+.++|++|+++|++++.+|..
T Consensus 136 ~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~ 215 (276)
T 4hbd_A 136 CKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDD 215 (276)
T ss_dssp CCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999999999 668899999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHcCCCcHHHHHHHhh-CC
Q 003309 806 GKTSLELAVESNFADSEVLAILSD-SH 831 (832)
Q Consensus 806 g~TpL~~A~~~g~~d~~iv~lLl~-~g 831 (832)
|.||||+|+..|+ .++|++|++ .|
T Consensus 216 G~TpLh~A~~~g~--~~iv~~Ll~~~g 240 (276)
T 4hbd_A 216 GSTALMCACEHGH--KEIAGLLLAVPS 240 (276)
T ss_dssp SCCHHHHHHHHTC--HHHHHHHHTSTT
T ss_pred CCCHHHHHHHCCC--HHHHHHHHhcCC
Confidence 9999999999999 999999998 55
No 110
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.73 E-value=6.6e-18 Score=158.80 Aligned_cols=100 Identities=26% Similarity=0.343 Sum_probs=96.4
Q ss_pred CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CCc
Q 003309 730 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNRE-GKT 808 (832)
Q Consensus 730 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~-g~T 808 (832)
+++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++.+|.. |.|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence 56888999999999999999999999999999999999999999999999999 9999999999999999999999 999
Q ss_pred HHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 809 SLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 809 pL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|||+|+..|+ .+++++|+++|+
T Consensus 81 ~L~~A~~~~~--~~~v~~Ll~~ga 102 (136)
T 1d9s_A 81 PVHDAAREGF--LDTLVVLHRAGA 102 (136)
T ss_dssp HHHHHHHHTC--HHHHHHHHHTCC
T ss_pred HHHHHHHcCC--HHHHHHHHHcCC
Confidence 9999999999 999999999874
No 111
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=99.73 E-value=1.7e-17 Score=150.51 Aligned_cols=95 Identities=23% Similarity=0.446 Sum_probs=70.5
Q ss_pred EEEEEEecCCC---CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 295 RQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 295 k~G~L~K~~~~---~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
|+|||.|+.+. ..+.|++|||||+ ++.||||+++.+..
T Consensus 2 keG~L~kK~g~~~~~~k~Wk~rwfvL~-~~~L~~yk~~~~~~-------------------------------------- 42 (112)
T 3cxb_B 2 KEGMLHYKAGTSYLGKEHWKTCFVVLS-NGILYQYPDRTDVI-------------------------------------- 42 (112)
T ss_dssp EEEEEEECCSCCCSSCCCCEEEEEEEE-TTEEEEESSSSCCS--------------------------------------
T ss_pred ceEEEEEeCCCCCCCCCCceEEEEEEE-CCEEEEECCCCCCC--------------------------------------
Confidence 79999977543 5689999999999 67888887764311
Q ss_pred cccccccccccccc--cCCcccCCcceEEEecC-CceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIK--VDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 372 ~~~~~i~l~~~~v~--~~~~~~~r~~~F~I~t~-~rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
+...|+|..+.+. ...+...|+|||+|+++ .++|+|||+|++||++||.+|+.+|..
T Consensus 43 -p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~ 102 (112)
T 3cxb_B 43 -PLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSK 102 (112)
T ss_dssp -CSEEEETTC-CEEEEEECCCSSCTTEEEEEETTSCCEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred -ccceEEecCCEEEeeeccCCCCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Confidence 1133555433322 23455678899999965 689999999999999999999988753
No 112
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.72 E-value=2.5e-17 Score=150.26 Aligned_cols=97 Identities=16% Similarity=0.367 Sum_probs=73.7
Q ss_pred CCcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCC
Q 003309 289 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD 368 (832)
Q Consensus 289 ~~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (832)
+...++++|||+|+++...+.|+||||||+ ++.|+||+++.+.
T Consensus 4 ~~~~~~~~G~L~K~~~~~~~~WkkR~fvL~-~~~L~yy~~~~~~------------------------------------ 46 (115)
T 2cod_A 4 GSSGKVKSGWLDKLSPQGKRMFQKRWVKFD-GLSISYYNNEKEM------------------------------------ 46 (115)
T ss_dssp CCSCCCEEEEEEECCSSSSSCCEEEEEEEC-SSEEEEEESSCCS------------------------------------
T ss_pred CCCCccEEEEEEEcCCCCCCCCceEEEEEE-CCEEEEEcCCCCc------------------------------------
Confidence 345678999999997646778999999999 6778888775431
Q ss_pred ccccccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 369 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 369 ~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
.+.+.|.|..++... .. + ++||+|+++.|+|+|+|+|++|+++||.+|+.++..
T Consensus 47 ---~~~g~i~l~~~~~v~-~~--~-~~~F~i~~~~r~~~l~a~s~~e~~~Wi~~l~~~~~~ 100 (115)
T 2cod_A 47 ---YSKGIIPLSAISTVR-VQ--G-DNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKS 100 (115)
T ss_dssp ---SCCCEEETTTEEEEE-EE--T-TTEEEEEESSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ---ccCCEEECCcceEEE-eC--C-CCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 112345555443221 11 1 699999999999999999999999999999999854
No 113
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.72 E-value=4.6e-18 Score=153.05 Aligned_cols=95 Identities=19% Similarity=0.368 Sum_probs=73.2
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..++++|||+|+ ..+.|+||||||+ ++.|+||+++...
T Consensus 6 ~~~~~~G~L~K~---~~k~Wk~RwfvL~-~~~L~yyk~~~~~-------------------------------------- 43 (107)
T 2cof_A 6 SGLETSSYLNVL---VNSQWKSRWCSVR-DNHLHFYQDRNRS-------------------------------------- 43 (107)
T ss_dssp CCCTTCCEEEEE---ETTEEEEEEEEEC-SSCEEEECSSTTC--------------------------------------
T ss_pred CCCcEeEEEEEe---cCCCcceEEEEEE-CCEEEEEeCCccc--------------------------------------
Confidence 456789999999 4578999999999 5677888775431
Q ss_pred ccccccccccccccccCCcccCCcceEEEecC-CceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~-~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
..+...|.+..|.|.+. .+..++|||+|+++ .|+|+|+|+|++|+++||.+|+.++.
T Consensus 44 ~~~~~~i~l~~~~v~~~-~~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~~~ 101 (107)
T 2cof_A 44 KVAQQPLSLVGCEVVPD-PSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESG 101 (107)
T ss_dssp SEEEEEECTTTCEEECC-CBTTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred CCCeeEEeccceEEEEC-CCCCCCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 11223456666766543 33467899999999 79999999999999999999998753
No 114
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.72 E-value=9.8e-18 Score=161.20 Aligned_cols=119 Identities=23% Similarity=0.227 Sum_probs=105.2
Q ss_pred cccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHH
Q 003309 708 SSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAM 787 (832)
Q Consensus 708 ~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~ 787 (832)
+++.++..++...+..++- ..+.+++..|..|.||||+ |..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~-~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 82 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLH-RELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD 82 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHH-TTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHH-hhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 4455555555554444433 3667899999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhC
Q 003309 788 FAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS 830 (832)
Q Consensus 788 ~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~ 830 (832)
++++|+++|++++.+|..|.||||+|+..|+ .+++++|+++
T Consensus 83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ 123 (156)
T 1bd8_A 83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGH--TAVVSFLAAE 123 (156)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC--HHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHHhCh--HHHHHHHHhc
Confidence 9999999999999999999999999999999 9999999975
No 115
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=99.72 E-value=1.8e-17 Score=153.88 Aligned_cols=98 Identities=23% Similarity=0.473 Sum_probs=77.3
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..++++|||+|+++ ..+.|+||||||. ++.|+||+++.+.
T Consensus 16 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~-~~~L~yy~~~~~~-------------------------------------- 55 (126)
T 1fao_A 16 SLGTKEGYLTKQGG-LVKTWKTRWFTLH-RNELKYFKDQMSP-------------------------------------- 55 (126)
T ss_dssp CTTCEEEEEEEECS-SSCCEEEEEEEEE-TTEEEEESSTTCS--------------------------------------
T ss_pred CCccEEEEEEEcCC-CCCCcccEEEEEE-CCEEEEeCCCCCC--------------------------------------
Confidence 45689999999964 5678999999999 5678888765421
Q ss_pred ccccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
.+.+.|+|..|.+....+...++|||+|++++|+|+|+|+|++|+++||.+|+.+|..
T Consensus 56 -~~~g~i~L~~~~~v~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~ 113 (126)
T 1fao_A 56 -EPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQ 113 (126)
T ss_dssp -SCSEEEEGGGCCEEEEECSSSSSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred -CceeEEEccceEEEEecccCCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 1234577777764333344567899999999999999999999999999999999976
No 116
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=99.72 E-value=2.7e-17 Score=151.94 Aligned_cols=99 Identities=27% Similarity=0.485 Sum_probs=76.5
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..++++|||+|++++..+.|+||||||. ++.|+||+++.+.
T Consensus 9 ~~~~~~G~L~K~~~~~~~~WkkR~fvL~-~~~L~yy~~~~~~-------------------------------------- 49 (123)
T 1upq_A 9 LPVHIRGWLHKQDSSGLRLWKRRWFVLS-GHCLFYYKDSREE-------------------------------------- 49 (123)
T ss_dssp SCEEEEEEEEEECSSSSCCEEEEEEEEE-TTEEEEESSTTCC--------------------------------------
T ss_pred CCceEEEEEEeeCCCCCCCceeEEEEEe-CCEEEEECCCCCc--------------------------------------
Confidence 4578999999997656689999999998 7888888765431
Q ss_pred ccccccccccccccccCC--cccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDA--DQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~--~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
.+.+.|.|..+.|.... ....++|||+|.+++ ++|+|+|+|++|+++||.+|+.++..
T Consensus 50 -~~~g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~ 110 (123)
T 1upq_A 50 -SVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRA 110 (123)
T ss_dssp -SCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred -ccceEEECCCCEEEECCCCccCCCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 11234566666665432 233578999999987 99999999999999999999999853
No 117
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.72 E-value=1.3e-17 Score=153.83 Aligned_cols=115 Identities=29% Similarity=0.386 Sum_probs=98.1
Q ss_pred CCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC
Q 003309 706 RSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK 785 (832)
Q Consensus 706 ~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~ 785 (832)
.+++++++..+... ....|+..+++++..|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+
T Consensus 8 ~~~l~~A~~~~~~~--~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~ 85 (123)
T 3aaa_C 8 DKEFMWALKNGDLD--EVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH 85 (123)
T ss_dssp HHHHHHHHHTTCHH--HHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred chHHHHHHHcCCHH--HHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence 34555555554443 3444666788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHH
Q 003309 786 AMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAIL 827 (832)
Q Consensus 786 ~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lL 827 (832)
.+++++|+++|++++.+|..|.||||+|.. .++.++|
T Consensus 86 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~-----~~~~~ll 122 (123)
T 3aaa_C 86 VSCVKLLLSKGADKTVKGPDGLTAFEATDN-----QAIKALL 122 (123)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHCCC-----HHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHhCC-----HHHHHHh
Confidence 999999999999999999999999999933 4555554
No 118
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.72 E-value=4.6e-18 Score=168.64 Aligned_cols=121 Identities=24% Similarity=0.269 Sum_probs=103.7
Q ss_pred CCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHc
Q 003309 705 ERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD-SRGLTPLHRCILR 783 (832)
Q Consensus 705 ~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~ 783 (832)
+.++++.++..++...+ ..|+. +++++..|..|+||||+|+..|+.+++++|+++|+++|.+| ..|+||||+|+..
T Consensus 44 g~t~L~~A~~~g~~~~v--~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~ 120 (183)
T 3deo_A 44 YETPWWTAARKADEQAL--SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120 (183)
T ss_dssp HHHHHHHHHHTTCHHHH--HHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHH--HHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence 34566666655544433 33344 88999999999999999999999999999999999999998 8899999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc----------------CCCcHHHHHHHhhC
Q 003309 784 GKAMFAKLLLTRGADPRAVNREGKTSLELAVES----------------NFADSEVLAILSDS 830 (832)
Q Consensus 784 g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~----------------g~~d~~iv~lLl~~ 830 (832)
|+.+++++|+++|++++.+|..|.||||+|+.. |+ .+++++|.++
T Consensus 121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~--~~i~~~L~~~ 181 (183)
T 3deo_A 121 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL--EKVINVLEGQ 181 (183)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHH--HHHHHHHHTC
T ss_pred CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCH--HHHHHHHHHh
Confidence 999999999999999999999999999999876 44 6788888764
No 119
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.72 E-value=1.1e-17 Score=152.34 Aligned_cols=96 Identities=33% Similarity=0.473 Sum_probs=92.5
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 003309 735 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV 814 (832)
Q Consensus 735 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~ 814 (832)
.+|.+|.||||+||..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcHHHHHHHhhCCC
Q 003309 815 ESNFADSEVLAILSDSHG 832 (832)
Q Consensus 815 ~~g~~d~~iv~lLl~~gg 832 (832)
..|+ .+++++|+++|+
T Consensus 84 ~~~~--~~~~~~Ll~~ga 99 (115)
T 2l6b_A 84 KNGH--HEIVKLLDAKGA 99 (115)
T ss_dssp TTTC--HHHHHHHHTTSS
T ss_pred HCCC--HHHHHHHHHcCC
Confidence 9998 999999999875
No 120
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=99.72 E-value=1.8e-17 Score=149.20 Aligned_cols=99 Identities=29% Similarity=0.675 Sum_probs=76.2
Q ss_pred ceeEEEEEEecCCC---CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCC
Q 003309 292 QTIRQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD 368 (832)
Q Consensus 292 ~~~k~G~L~K~~~~---~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (832)
.++++|||+|+++. ..+.|+||||+|. ++.|+||+++.+.
T Consensus 2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~-~~~L~yy~~~~~~------------------------------------ 44 (108)
T 1u5d_A 2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVS-RGLFYYYANEKSK------------------------------------ 44 (108)
T ss_dssp CEEEEEEEEEEEECSSSSCEEEEEEEEEEE-TTEEEEESSTTCS------------------------------------
T ss_pred CccEEEEEEEcCCCCCccccCceeeEEEEe-CCEEEEecCCCCC------------------------------------
Confidence 46899999999753 2378999999999 6788888765431
Q ss_pred ccccccccccccccccccCC---cccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 369 EKSAARHTVNLLTSTIKVDA---DQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 369 ~~~~~~~~i~l~~~~v~~~~---~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
.+.+.|.|..+++...+ ....++|||+|++++ ++|+|+|+|++|+++||.+|+.+|..+
T Consensus 45 ---~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i~~l 107 (108)
T 1u5d_A 45 ---QPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLKDL 107 (108)
T ss_dssp ---SCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCEEEEecceEEEeCCccccccCCcceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 12244666666654321 334568999999998 999999999999999999999999753
No 121
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.72 E-value=2.4e-17 Score=169.58 Aligned_cols=142 Identities=21% Similarity=0.283 Sum_probs=118.1
Q ss_pred hhhhHHHHHhhhh------ccccCCCCcccccccccCccccccccccCCCCCC-----CcCCCCCCcHHHHHHHcCCHHH
Q 003309 687 ISSLTLAKAMLLN------EQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQ-----TMDDLEGCTLLHLACDSADIGM 755 (832)
Q Consensus 687 ~~~l~~~~~ll~~------~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~-----~~~d~~g~TpLh~Aa~~g~~~~ 755 (832)
.+++.+++.++.. ..+..+.|++++++..++...+.. |+..++++ +..|..|.||||+|+..|+.++
T Consensus 13 ~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~--Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 90 (232)
T 2rfa_A 13 ENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMV--LMEAAPELVFEPMTSELYEGQTALHIAVINQNVNL 90 (232)
T ss_dssp TTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHH--HHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHH--HHHcCchhccccccccCCCCcCHHHHHHHcCCHHH
Confidence 3456667766653 234567788888887766555443 44455554 6678899999999999999999
Q ss_pred HHHHHHcCCCCCccCC-------------CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHH
Q 003309 756 LELLLQYGANINATDS-------------RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSE 822 (832)
Q Consensus 756 v~~Ll~~gadvn~~d~-------------~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~ 822 (832)
+++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .+
T Consensus 91 v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~--~~ 168 (232)
T 2rfa_A 91 VRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN--KT 168 (232)
T ss_dssp HHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSC--HH
T ss_pred HHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC--hH
Confidence 9999999999998866 79999999999999999999999999999999999999999999998 77
Q ss_pred HH----HHHhhCCC
Q 003309 823 VL----AILSDSHG 832 (832)
Q Consensus 823 iv----~lLl~~gg 832 (832)
++ ++|+++|+
T Consensus 169 ~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 169 FACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCC
Confidence 77 99998774
No 122
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.71 E-value=8.4e-18 Score=179.92 Aligned_cols=174 Identities=20% Similarity=0.244 Sum_probs=133.6
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhcc-----ccCCCCcccccccccCc
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQ-----TSLERSSSSLTGNSSDR 718 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~-----~~~~~~~~~l~~~~~~~ 718 (832)
...|+.|+..|+.+. +++|++.|+|+|..+..+ ...++..+++.|+..+. +..+.+++++++..+..
T Consensus 74 ~t~L~~A~~~g~~~~-v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 152 (299)
T 1s70_B 74 LTALHQACIDDNVDM-VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME 152 (299)
T ss_dssp CBHHHHHHHTTCHHH-HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHH
T ss_pred CCHHHHHHHcCCHHH-HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchH
Confidence 356888888888775 456668999999977664 33456677777776433 34567888887665444
Q ss_pred ccccccc-------------------------ccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Q 003309 719 SSSGSLN-------------------------LAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRG 773 (832)
Q Consensus 719 ~~~~~ll-------------------------l~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g 773 (832)
..+..++ +..........+..|.||||+|+..|+.+++++|+++|+++|.+|..|
T Consensus 153 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g 232 (299)
T 1s70_B 153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232 (299)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTC
T ss_pred HHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCC
Confidence 3332211 112223334466789999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHh
Q 003309 774 LTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILS 828 (832)
Q Consensus 774 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl 828 (832)
+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.... +++..|+
T Consensus 233 ~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~---~~l~~l~ 284 (299)
T 1s70_B 233 WTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL---GYLEELQ 284 (299)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGG---HHHHHHH
T ss_pred CcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHH---HHHHHHH
Confidence 999999999999999999999999999999999999999976543 4444443
No 123
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.71 E-value=2.7e-18 Score=175.79 Aligned_cols=130 Identities=22% Similarity=0.266 Sum_probs=111.0
Q ss_pred hccccCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHH
Q 003309 699 NEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPL 777 (832)
Q Consensus 699 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-gadvn~~d~~g~TpL 777 (832)
...+..+.+++++++..++...+ ..|+..|++++..|..|.||||+||..|+.+++++|+++ |+++|.+|..|+|||
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v--~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL 144 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWL--RECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL 144 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHH--HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred cccccccccccccccccCcHHHH--HHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH
Confidence 44556678888888877665543 345567899999999999999999999999999999999 999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 778 HRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 778 h~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+ .++++.|++.|+
T Consensus 145 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~--~~~l~~l~~~~~ 197 (222)
T 3ehr_A 145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAAC--ASLLKKKQGTDA 197 (222)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHH--HHHHC-------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhH--HHHHHHHhccch
Confidence 99999999999999999999999999999999999999988 999999988663
No 124
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=99.71 E-value=3.4e-17 Score=147.73 Aligned_cols=97 Identities=27% Similarity=0.426 Sum_probs=72.7
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCC-ceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSR-GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~-~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
..++++|||+|+++ ..+.|+||||||.++ +.|+||+++.+.
T Consensus 5 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~~~L~yyk~~~~~------------------------------------- 46 (109)
T 2i5f_A 5 GVIIKQGCLLKQGH-RRKNWKVRKFILREDPAYLHYYDPAGAE------------------------------------- 46 (109)
T ss_dssp CCEEEEEEEEEECT-TTCCEEEEEEEEETTTTEEEEECTTSCS-------------------------------------
T ss_pred CceeEEEEEEEcCC-CCCCceEEEEEEeCCCcEEEEECCCCCC-------------------------------------
Confidence 46789999999955 467899999999965 388888765321
Q ss_pred cccccccccccccccccCCcc-----cCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTSTIKVDADQ-----SDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v~~~~~~-----~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
.+.+.|+|..|.|....+. .+++|||+|++++ ++|+|+|+|++|+++||.+|+.+|
T Consensus 47 --~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 47 --DPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp --SCSEEEECTTCEEEEECC--------CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred --CccEEEECCCCEEEEccCCcccccCCCceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 1224466666655321111 2368999999987 679999999999999999999886
No 125
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=152.42 Aligned_cols=99 Identities=22% Similarity=0.474 Sum_probs=76.5
Q ss_pred CcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 290 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 290 ~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
...++++|||+|+++...+.|+||||||+ ++.|+||+++.+.
T Consensus 18 ~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~-~~~L~yy~~~~~~------------------------------------- 59 (128)
T 2dkp_A 18 NAPVVRRGWLYKQDSTGMKLWKKRWFVLS-DLCLFYYRDEKEE------------------------------------- 59 (128)
T ss_dssp TSCCCEEEEEEEECCSSSCCEEEEEEEEE-TTEEEEESSTTCC-------------------------------------
T ss_pred CCCcEEEEEEEEeCCCCCCCceeEEEEEe-CCEEEEECCCCCc-------------------------------------
Confidence 35678999999997656788999999998 6788888765331
Q ss_pred cccccccccccccccccCC--cccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTSTIKVDA--DQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v~~~~--~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.+.+.|.|..+.|.... +...++|||+|++++ |+|+|+|+|++|+++||.+|+.|+.
T Consensus 60 --~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 60 --GILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp --SEEEEECGGGSEEEECCGGGCCSSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred --ccceEEEcCceEEEEcCCcccCCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 12344666666654322 223678999999986 9999999999999999999998863
No 126
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=99.71 E-value=2.9e-17 Score=149.06 Aligned_cols=103 Identities=23% Similarity=0.381 Sum_probs=71.3
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCC-CCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSK-SSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
..++++|||+|+++ ..+.|+||||||+.++.|+||+++.+. +.|.
T Consensus 3 ~~~~~~G~L~K~g~-~~k~WkkR~fvL~~~~~L~yyk~~~~~~~~g~--------------------------------- 48 (112)
T 3aj4_A 3 MAFVKSGWLLRQST-ILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDK--------------------------------- 48 (112)
T ss_dssp CSCSEEEEEEEECS-SSCCEEEEEEEECTTSEEEEESSTTCCSEEEE---------------------------------
T ss_pred cceeEEEEEEeeCC-CCCCeeceEEEEeeCCEEEEEcCCCCCCCCcc---------------------------------
Confidence 45689999999955 567999999999547889998876431 1110
Q ss_pred cccccccccccccc-ccc--CCcccCCcceEEEecC-CceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTST-IKV--DADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 370 ~~~~~~~i~l~~~~-v~~--~~~~~~r~~~F~I~t~-~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
.......|++..+. +.. .++...++|||+|+++ .|+|+|+|+|++|+++||.+|+.|+
T Consensus 49 i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 49 VHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp EEHHHHEEEEEEGGGCCSCCCSTTCCGGGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccCCCCCCCcCcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 01111223333221 211 2233344799999976 7999999999999999999999886
No 127
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.71 E-value=4.5e-17 Score=149.12 Aligned_cols=98 Identities=30% Similarity=0.548 Sum_probs=74.8
Q ss_pred CcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 290 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 290 ~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
...++++|||+|+++ ..+.|+||||||. ++.|+||+++.+.
T Consensus 5 ~~~~~~~G~L~K~g~-~~~~Wk~R~fvL~-~~~L~yy~~~~~~------------------------------------- 45 (118)
T 1v89_A 5 SSGPIKMGWLKKQRS-IVKNWQQRYFVLR-AQQLYYYKDEEDT------------------------------------- 45 (118)
T ss_dssp SSCEEEEEEEEEECS-SSSCEEEEEEEEE-TTEEEEESSSSCC-------------------------------------
T ss_pred CCCCcEEEEEEecCC-CCCCccEEEEEEE-CCEEEEEeCCCCC-------------------------------------
Confidence 356789999999954 5678999999999 5678888765431
Q ss_pred cccccccccccccccccCC--cccCCcceEEEec--------CCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTSTIKVDA--DQSDLRFCFRIIS--------PTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v~~~~--~~~~r~~~F~I~t--------~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.+.+.|.|..+++.... ....++|||+|++ +.++|+|+|+|++|+++||.+|+.+|.
T Consensus 46 --~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~ 112 (118)
T 1v89_A 46 --KPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG 112 (118)
T ss_dssp --SCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred --CceEEEECCCCEEEEcCcCcccCCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHc
Confidence 12244666666654211 2335689999998 779999999999999999999999986
No 128
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.71 E-value=6.8e-18 Score=183.80 Aligned_cols=161 Identities=13% Similarity=0.013 Sum_probs=125.0
Q ss_pred Hhhhhccccccccccchh--hhhhhhHHHHHhhhhccccCCCCccccc---------------------ccccCcccccc
Q 003309 667 YRHIVNFEVDVNAVYEQV--SCISSLTLAKAMLLNEQTSLERSSSSLT---------------------GNSSDRSSSGS 723 (832)
Q Consensus 667 ~~lL~~~gadvN~~~~~~--~~~~~l~~~~~ll~~~~~~~~~~~~~l~---------------------~~~~~~~~~~~ 723 (832)
+++|++.|+++|..+..+ ...+++.+++.++........ +.+.++ .+.......+.
T Consensus 35 v~~ll~~ga~i~~~~~~g~~~~~g~~~~v~~Ll~~g~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 113 (327)
T 1sw6_A 35 TSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEI-QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVN 113 (327)
T ss_dssp CCSTTTSSCCCEECBCCCCCCCHHHHHHHHHHHHHHHC--------------------------------CHHHHHHHHH
T ss_pred HHHHhhCCcccccCCCCCCcccCchhHHHHHHHHhccCCcc-ccchHhhhcccccccccccCCccchhHHHHHhhHHHHH
Confidence 566678888888765543 334677777777765544322 122211 11122222345
Q ss_pred ccccCCCCCCCc-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC---HHHHHHHHhCC-CC
Q 003309 724 LNLAGTSEGQTM-DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK---AMFAKLLLTRG-AD 798 (832)
Q Consensus 724 lll~~~~~~~~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~---~~~v~~Ll~~g-ad 798 (832)
.+|+..|++++. .|..|+||||+||..|+.++|++||++|+++|.+|..|+||||+|+..|+ .++++.|++++ ++
T Consensus 114 ~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~ 193 (327)
T 1sw6_A 114 DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 193 (327)
T ss_dssp HHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG
T ss_pred HHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc
Confidence 567889999999 89999999999999999999999999999999999999999999999998 78888888886 88
Q ss_pred CCCCCCCCCcHHHHHHH----cCCCcHHHHHHHhhC
Q 003309 799 PRAVNREGKTSLELAVE----SNFADSEVLAILSDS 830 (832)
Q Consensus 799 ~~~~~~~g~TpL~~A~~----~g~~d~~iv~lLl~~ 830 (832)
++.+|..|.||||+|+. .|+ .+++++|++.
T Consensus 194 ~~~~d~~g~tpLh~A~~~~~~~g~--~~~v~~Ll~~ 227 (327)
T 1sw6_A 194 LILEDSMNRTILHHIIITSGMTGC--SAAAKYYLDI 227 (327)
T ss_dssp GGEECTTCCCHHHHHHHHHTSTTC--HHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHcccccc--HHHHHHHHHH
Confidence 99999999999999999 788 9999999875
No 129
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.71 E-value=1.5e-17 Score=172.46 Aligned_cols=124 Identities=17% Similarity=0.195 Sum_probs=89.1
Q ss_pred CCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc
Q 003309 704 LERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILR 783 (832)
Q Consensus 704 ~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~ 783 (832)
.|.|+++.++..+....+ ..|+..|++++.. ..|.||||+|+..|+.+++++|++.|+++|..|..|+||||+|+..
T Consensus 4 ~g~t~L~~a~~~~~~~~~--~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTG--SERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred cccccCchhhhhhhHHHH--HHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 356777777776555543 3456778888764 6789999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 784 GKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 784 g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|+.+++++|+++|++++.+|..|.||||+|+..|+ .++|++|+++|+
T Consensus 81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~--~~~v~~Ll~~ga 127 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN--VQVCKFLVESGA 127 (239)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 99999999999999999999999999999999999 999999999874
No 130
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.71 E-value=2.7e-17 Score=150.42 Aligned_cols=97 Identities=21% Similarity=0.452 Sum_probs=71.7
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeC-CceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDS-RGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~-~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
..++++|||+|+++ ..+.|+||||||+. ++.|+||+++.+..
T Consensus 6 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~------------------------------------ 48 (117)
T 1v5u_A 6 SGRSYEGILYKKGA-FMKPWKARWFVLDKTKHQLRYYDHRMDTE------------------------------------ 48 (117)
T ss_dssp CSSSEEEEEEECCC-SSSCCEEEEEEEETTTTEEEEESSSSCSS------------------------------------
T ss_pred CCccEEEEEEecCC-CCCCceeeEEEEECCCCEEEEeecCCCCc------------------------------------
Confidence 45679999999965 46789999999995 57888887754311
Q ss_pred ccccccccccccccccc-------CCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTSTIKV-------DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v~~-------~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
+.+.|.|..+.+.. .++...++|||+|.++.|+|+|+|+|++|+++||.+|+.+|
T Consensus 49 ---~~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i 110 (117)
T 1v5u_A 49 ---CKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCL 110 (117)
T ss_dssp ---CCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEESSCEEEEECSSHHHHHHHHHHHHTTC
T ss_pred ---cceEEEccCcEEEeecCccccccccCCCCeEEEEECCCceEEEECCCHHHHHHHHHHHHHHh
Confidence 12234444433221 11234567999999999999999999999999999998775
No 131
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=99.71 E-value=2.6e-17 Score=152.62 Aligned_cols=102 Identities=20% Similarity=0.373 Sum_probs=74.2
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..++++|||+|+++ ..+.|+||||||++++.|+||+...+.
T Consensus 6 ~~~~~~G~L~K~g~-~~k~WkkRwfvL~~~~~L~yy~~~~~~-------------------------------------- 46 (125)
T 1unq_A 6 VAIVKEGWLHKRGE-YIKTWRPRYFLLKNDGTFIGYKERPQD-------------------------------------- 46 (125)
T ss_dssp GCEEEEEEEEEECS-SSCCEEEEEEEEETTSEEEEESSCCCS--------------------------------------
T ss_pred CCeeEEeeEEeccC-CccCccCcEEEEecCCEEEEEeCCCCC--------------------------------------
Confidence 45789999999965 567899999999977888888775431
Q ss_pred cccccccccccccccc---CCcccCCcceEEEec----CCceEEEEeCCHHHHHHHHHHHHHHHHHHHc
Q 003309 371 SAARHTVNLLTSTIKV---DADQSDLRFCFRIIS----PTKNYTLQAESALDQMDWIEKITGVIASLLS 432 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~---~~~~~~r~~~F~I~t----~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 432 (832)
.+.+.|.|..+++.. ...+..++|||+|++ +.++|+|+|+|++|+++||.+|+.+|...-.
T Consensus 47 -~~~g~i~L~~~~~~~~~~~~~~~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~ 114 (125)
T 1unq_A 47 -VDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKK 114 (125)
T ss_dssp -HHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCceeEccceeEEeeeecccccCCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhccc
Confidence 011223333333221 012235789999995 5689999999999999999999999976543
No 132
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.71 E-value=9.7e-18 Score=174.56 Aligned_cols=120 Identities=23% Similarity=0.270 Sum_probs=103.9
Q ss_pred CCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHcC
Q 003309 706 RSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD-SRGLTPLHRCILRG 784 (832)
Q Consensus 706 ~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~g 784 (832)
.|+++.++..++... ...|+. +++++..|..|+||||+||..|+.++|++|+++|+++|.+| ..|+||||+|+..|
T Consensus 46 ~t~L~~A~~~g~~~~--v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g 122 (244)
T 3ui2_A 46 ETPWWTAARKADEQA--LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122 (244)
T ss_dssp HHHHHHHHTTTCHHH--HHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHH--HHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence 456666665554443 333444 88999999999999999999999999999999999999998 78999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHH----------------HcCCCcHHHHHHHhhC
Q 003309 785 KAMFAKLLLTRGADPRAVNREGKTSLELAV----------------ESNFADSEVLAILSDS 830 (832)
Q Consensus 785 ~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~----------------~~g~~d~~iv~lLl~~ 830 (832)
+.++|++|+++|++++.+|..|.||||+|+ ..|+ .+++++|+++
T Consensus 123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~--~~iv~~L~~~ 182 (244)
T 3ui2_A 123 RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL--EKVINVLEGQ 182 (244)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHH--HHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcCh--HHHHHHHHHh
Confidence 999999999999999999999999999998 5566 8899999874
No 133
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.70 E-value=5.5e-17 Score=166.13 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=131.9
Q ss_pred ceeehhhhcCchhhhHhhhhccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccCCCC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 731 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~ 731 (832)
..|+.|+..|+...|..+| +.|++++.. .+..+.+++++++..+....+..++-.+...
T Consensus 4 t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~--------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~ 62 (228)
T 2dzn_A 4 YPLHQACMENEFFKVQELL-HSKPSLLLQ--------------------KDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHH-HHCGGGTTC--------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTC
T ss_pred cHHHHHHHhCCHHHHHHHH-hcCcccccc--------------------CCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Confidence 3588899999988777666 667665431 2233577888887776655544444444446
Q ss_pred CCCc-CCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCc
Q 003309 732 GQTM-DDLEGCTLLHLACDSADIGMLELLLQYG--ANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKT 808 (832)
Q Consensus 732 ~~~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~g--advn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~T 808 (832)
+++. .+..|.||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 63 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 142 (228)
T 2dzn_A 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142 (228)
T ss_dssp CGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred cccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCC
Confidence 6666 8899999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHhhCC
Q 003309 809 SLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 809 pL~~A~~~g~~d~~iv~lLl~~g 831 (832)
|||+|+..|+ .+++++|+++|
T Consensus 143 ~L~~A~~~~~--~~~v~~Ll~~g 163 (228)
T 2dzn_A 143 PLHRAASVGS--LKLIELLCGLG 163 (228)
T ss_dssp HHHHHHHTTC--HHHHHHHHTTT
T ss_pred HHHHHHHcCC--HHHHHHHHhcC
Confidence 9999999998 99999999987
No 134
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=99.70 E-value=1.9e-17 Score=147.88 Aligned_cols=93 Identities=26% Similarity=0.496 Sum_probs=72.3
Q ss_pred EEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccccc
Q 003309 295 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 374 (832)
Q Consensus 295 k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (832)
++|||+|+++ ..++|+||||||+ ++.|+||+++.+.. ..+.
T Consensus 1 ~eG~L~K~g~-~~k~Wk~R~fvL~-~~~L~Yy~~~~~~~-------------------------------------~~~~ 41 (103)
T 3rcp_A 1 MEGVLYKWTN-YLTGWQPRWFVLD-NGILSYYDSQDDVC-------------------------------------KGSK 41 (103)
T ss_dssp CEEEEEEECC-TTTCEEEEEEEEE-TTEEEEESSCC----------------------------------------CCCS
T ss_pred CceEEEEccC-CCCCeeceEEEEE-CCEEEEEecCCccc-------------------------------------CCcc
Confidence 4899999954 5678999999999 78899998765310 1123
Q ss_pred ccccccccccccCCcccCCcceEEEecC-CceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 375 HTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 375 ~~i~l~~~~v~~~~~~~~r~~~F~I~t~-~rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
+.|+|..|.|...+ +.+++|+|+++ .++|+|+|+|++|+++||.+|+.|+..
T Consensus 42 g~i~L~~~~v~~~~---~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~ 94 (103)
T 3rcp_A 42 GSIKMAVCEIKVHS---ADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKAS 94 (103)
T ss_dssp CEEEGGGCEEECCT---TCSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred cEEEeeeeEEEEcC---CCCceEEEEeCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 55777777775432 24789999998 799999999999999999999988754
No 135
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=99.70 E-value=2.9e-17 Score=149.96 Aligned_cols=97 Identities=18% Similarity=0.372 Sum_probs=73.4
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccc
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (832)
++++|||+||++ ..++|++|||||+++ .|+||+..+... ...
T Consensus 6 ~~k~G~L~Kk~~-~~k~W~~rwfVL~~~-~L~yyK~~~~~~------------------------------------d~~ 47 (120)
T 4a6h_A 6 EIKSGFLERRSK-FLKSYSKGYYVLTPN-FLHEFKTADRKK------------------------------------DLV 47 (120)
T ss_dssp CSEEEEEEEEET-TTTEEEEEEEEECSS-EEEEESSCCTTT------------------------------------CCS
T ss_pred ccEEEEEEEcCC-CCCCCccEEEEEeCC-EEEEEcCCCcCc------------------------------------CCC
Confidence 789999999965 677999999999976 777777653210 112
Q ss_pred ccccccccccccccCCcccC--------CcceEEEecCC-------ceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 373 ARHTVNLLTSTIKVDADQSD--------LRFCFRIISPT-------KNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 373 ~~~~i~l~~~~v~~~~~~~~--------r~~~F~I~t~~-------rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
+.+.|.|..|+|....++.. +.++|.|.+++ ++|+|+|+|.+||++||.+|+.++
T Consensus 48 P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 48 PVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp CSEEEEGGGEEEEEECCCCC---------CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred ceEEEECCCCEEEEcccccccccccccCCCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 34668888888875333322 67899998765 599999999999999999999875
No 136
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.70 E-value=5.1e-17 Score=149.79 Aligned_cols=94 Identities=22% Similarity=0.226 Sum_probs=88.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 003309 737 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES 816 (832)
Q Consensus 737 d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~ 816 (832)
+..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHhhCCC
Q 003309 817 NFADSEVLAILSDSHG 832 (832)
Q Consensus 817 g~~d~~iv~lLl~~gg 832 (832)
|+ .+++++|+++|+
T Consensus 84 ~~--~~~v~~Ll~~ga 97 (123)
T 3aaa_C 84 GH--VSCVKLLLSKGA 97 (123)
T ss_dssp TC--HHHHHHHHHTTC
T ss_pred CC--HHHHHHHHHcCC
Confidence 99 999999999874
No 137
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=99.70 E-value=5.7e-17 Score=157.38 Aligned_cols=99 Identities=22% Similarity=0.366 Sum_probs=70.6
Q ss_pred cceeEEEEEEecCCCC----CCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCC
Q 003309 291 VQTIRQGYLSKRSSNL----RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV 366 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~----~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (832)
..+++||||+||+.+. .++||||||||+ ++.|+||+++.+..
T Consensus 13 ~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~-~~~L~Yyk~~~~~~--------------------------------- 58 (164)
T 2lul_A 13 FNTILEEILIKRSQQKKKTSPLNYKERLFVLT-KSMLTYYEGRAEKK--------------------------------- 58 (164)
T ss_dssp SSEEEEEEEEEECCCCSSSCCCCEEEEEEEEE-SSEEEEECCCSSSC---------------------------------
T ss_pred CCeeEEEEEEEecCCCCCCCCCCceeEEEEEE-CCEEEEEeccCccc---------------------------------
Confidence 4678999999997542 357999999999 56777777653311
Q ss_pred CCccccccccccccccccc-c-----CCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 367 HDEKSAARHTVNLLTSTIK-V-----DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 367 ~~~~~~~~~~i~l~~~~v~-~-----~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.+.+.|+|..+... . ......+.+||+|++++|+|+|+|+|++|+++||+||+.+|.
T Consensus 59 -----~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~t~~rt~~l~A~s~~e~~~Wi~aL~~~i~ 121 (164)
T 2lul_A 59 -----YRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIK 121 (164)
T ss_dssp -----CCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred -----ccccEEEEeeeEEEEeccccccCcccccceeEEEecCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 01122333322211 1 011235679999999999999999999999999999999986
No 138
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.9e-17 Score=148.21 Aligned_cols=99 Identities=23% Similarity=0.463 Sum_probs=75.6
Q ss_pred CcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 290 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 290 ~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
...++++|||+|+++...+.|+||||||. ++.|+||+++.+.
T Consensus 19 ~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~-~~~L~yy~~~~~~------------------------------------- 60 (122)
T 2yry_A 19 NAPVTKAGWLFKQASSGVKQWNKRWFVLV-DRCLFYYKDEKEE------------------------------------- 60 (122)
T ss_dssp TCCEEEEEEEEEECCSSSCCEEEEEEEEE-TTEEEEESSTTCC-------------------------------------
T ss_pred CCCccEEEEEEEECCCCCCCcEEEEEEEe-CCEEEEECCCCCC-------------------------------------
Confidence 34678999999997556789999999998 6888888765431
Q ss_pred cccccccccccccccccC--CcccCCcceEEEecC-CceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTSTIKVD--ADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v~~~--~~~~~r~~~F~I~t~-~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.+.+.|.|..++|... .+...++|||+|+++ .++|+|+|+|++|+++||.+|+.++.
T Consensus 61 --~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 120 (122)
T 2yry_A 61 --SILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAAR 120 (122)
T ss_dssp --SCCEEEESTTCCCEECCTTCSCSSSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred --CcccEEEcCCCEEEEcCccccCCcccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 1224466665554321 233467899999865 69999999999999999999998873
No 139
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.70 E-value=1.6e-17 Score=173.85 Aligned_cols=129 Identities=18% Similarity=0.148 Sum_probs=107.8
Q ss_pred cccCCCCcccccccc---cCccccccccccCCCCCCC-----------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 003309 701 QTSLERSSSSLTGNS---SDRSSSGSLNLAGTSEGQT-----------MDDLEGCTLLHLACDSADIGMLELLLQYGANI 766 (832)
Q Consensus 701 ~~~~~~~~~~l~~~~---~~~~~~~~lll~~~~~~~~-----------~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadv 766 (832)
.+..+.|++++++.. ++...+. +|+..|++++ ..|..|.||||+|+..|+.+++++|+++|+++
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~--~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 116 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIM--PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHH--HHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCCCCCCHHHHHHHccccchHHHHH--HHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 456678888888876 5444443 4444454444 23477999999999999999999999999999
Q ss_pred CccCCC-------------CCcHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCcHHHHHHHcCCCcHH-------H
Q 003309 767 NATDSR-------------GLTPLHRCILRGKAMFAKLLLT---RGADPRAVNREGKTSLELAVESNFADSE-------V 823 (832)
Q Consensus 767 n~~d~~-------------g~TpLh~A~~~g~~~~v~~Ll~---~gad~~~~~~~g~TpL~~A~~~g~~d~~-------i 823 (832)
+..|.. |+||||+|+..|+.+++++|++ +|++++.+|..|.||||+|+..++...+ +
T Consensus 117 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~i 196 (256)
T 2etb_A 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 196 (256)
T ss_dssp TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHH
Confidence 999886 9999999999999999999999 9999999999999999999994333377 9
Q ss_pred HHHHhhCC
Q 003309 824 LAILSDSH 831 (832)
Q Consensus 824 v~lLl~~g 831 (832)
+++|+++|
T Consensus 197 v~~Ll~~g 204 (256)
T 2etb_A 197 YDGLLQMG 204 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 99999865
No 140
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=99.70 E-value=6.4e-17 Score=150.23 Aligned_cols=96 Identities=27% Similarity=0.529 Sum_probs=75.0
Q ss_pred ceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
.++++|||+|+++ ..+.|+||||||+ ++.|+||+++.+.
T Consensus 4 ~~~~~G~L~K~g~-~~~~Wk~R~fvL~-~~~L~yy~~~~~~--------------------------------------- 42 (127)
T 1fgy_A 4 NPDREGWLLKLGG-RVKTWKRRWFILT-DNCLYYFEYTTDK--------------------------------------- 42 (127)
T ss_dssp SCSEEEEEEEECS-SSCCEEEEEEEEE-TTEEEEESSTTCS---------------------------------------
T ss_pred CCceEeEEEEECC-CCCCeEEEEEEEE-CCEEEEeCCCCCC---------------------------------------
Confidence 4679999999955 4678999999999 6778888765331
Q ss_pred cccccccccccccccCCcccCCcceEEEecCC----------------------ceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIKVDADQSDLRFCFRIISPT----------------------KNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~----------------------rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
.+.+.|.|..+++... .+..+++||+|++++ |+|+|+|+|++|+++||.+|+.+|..
T Consensus 43 ~~~g~i~L~~~~v~~~-~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~ 121 (127)
T 1fgy_A 43 EPRGIIPLENLSIREV-LDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR 121 (127)
T ss_dssp SCSEEEECTTCEEEEE-CCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CcceEEECCceEEEEc-cCCCCCceEEEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhcc
Confidence 1234567777766542 344678999999864 79999999999999999999999864
No 141
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=99.70 E-value=4.8e-17 Score=151.63 Aligned_cols=99 Identities=26% Similarity=0.424 Sum_probs=75.2
Q ss_pred CcceeEEEEEEecCCCCCCCCceeEEEEeCC-ceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCC
Q 003309 290 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSR-GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD 368 (832)
Q Consensus 290 ~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~-~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (832)
...++++|||+|+++ ..+.|+||||||.++ +.|+||+++.+.
T Consensus 15 ~~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~~~L~yy~~~~~~------------------------------------ 57 (129)
T 1x05_A 15 RGVIIKQGCLLKQGH-RRKNWKVRKFILREDPAYLHYYDPAGAE------------------------------------ 57 (129)
T ss_dssp CSEEEEEEEEEECCS-SCCCCEEEEEEEEETTTEEEEECSSCCS------------------------------------
T ss_pred cCCceEEEEEEecCC-CCCCCeeEEEEEeCCCCEEEEECCCCCC------------------------------------
Confidence 356789999999954 567899999999975 488898765321
Q ss_pred ccccccccccccccccccCCcc-----cCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 369 EKSAARHTVNLLTSTIKVDADQ-----SDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 369 ~~~~~~~~i~l~~~~v~~~~~~-----~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.+.+.|+|..|.+....+. .+++|||+|++++ ++|+|+|+|++|+++||.+|+.+|.
T Consensus 58 ---~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~ 120 (129)
T 1x05_A 58 ---DPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASR 120 (129)
T ss_dssp ---SCSEEEECTTCEEEECCCCCCSSSCSSCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred ---cceeEEEccCCEEEEccCCccccccCCCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 1234466666655432221 2378999999986 7799999999999999999999985
No 142
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.7e-17 Score=147.84 Aligned_cols=97 Identities=24% Similarity=0.471 Sum_probs=74.2
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..++++|||+|+++...+.|+||||+|. ++.|+||+++.+.
T Consensus 9 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~-~~~L~yy~~~~~~-------------------------------------- 49 (117)
T 2d9y_A 9 APVTKAGWLFKQASSGVKQWNKRWFVLV-DRCLFYYKDEKEE-------------------------------------- 49 (117)
T ss_dssp CCCCEEEEEEEECTTSSSCEEEEEEEEE-TTEEEEESSTTCC--------------------------------------
T ss_pred CCeeEEEEEEEeCCCCCCCceEEEEEEC-CCEEEEECCCCCC--------------------------------------
Confidence 4578999999997556789999999998 6788888765431
Q ss_pred ccccccccccccccccC--CcccCCcceEEEecC-CceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVD--ADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~--~~~~~r~~~F~I~t~-~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
.+.+.|.|..++|... .+...++|||+|+++ .++|+|+|+|++|+++||.+|+.++
T Consensus 50 -~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~ 108 (117)
T 2d9y_A 50 -SILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108 (117)
T ss_dssp -SCCEEEECSSCEEEECCTTTTCCCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred -CcCCEEEeCCeEEEEcCccccCCCccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 1224466666655321 233467899999765 5999999999999999999999876
No 143
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=99.69 E-value=3.3e-17 Score=151.48 Aligned_cols=102 Identities=17% Similarity=0.290 Sum_probs=74.1
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCC-----CCCCCCCCCCccccCcCccCCCccccccccccCCC
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQC-----SKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG 365 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (832)
..++|+|||+|+++ ..+.|+||||||.+ ..|+||+.+. ..|.|
T Consensus 10 ~~~~k~G~L~K~g~-~~k~Wk~RwfVL~~-~~L~yyk~~~~~~~e~~plg------------------------------ 57 (124)
T 2w2x_D 10 DEHKQQGELYMWDS-IDQKWTRHFCAIAD-AKLSFSDDIEQTMEEDNPLG------------------------------ 57 (124)
T ss_dssp ---CCEEEEEEEET-TTTEEEEEEEEEET-TEEEEEEEHHHHHHCSSCCC------------------------------
T ss_pred hhcceeEEEEEECC-CCCCceEeEEEEEC-CEEEEEcccccccccccccC------------------------------
Confidence 35679999999954 56789999999995 5577776532 11111
Q ss_pred CCCccccccccccccccccccCCcc-cCCcceEEEecCC---ceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 366 VHDEKSAARHTVNLLTSTIKVDADQ-SDLRFCFRIISPT---KNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 366 ~~~~~~~~~~~i~l~~~~v~~~~~~-~~r~~~F~I~t~~---rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
+.+.+.|+|..|+|....+. ..++|||+|.++. ++|+|+|+|++||++||.||+.++..
T Consensus 58 -----~~~~G~I~L~~~~v~~~~~~~~~k~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~ 120 (124)
T 2w2x_D 58 -----SLCRGILDLNTYNVVKAPQGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWK 120 (124)
T ss_dssp -----CSCSEEEEGGGEEEEECTTCBTTBSEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC-
T ss_pred -----CccccEEECCCCEEEEccCCcCCCCEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHh
Confidence 12346688888887654332 4678999999864 78999999999999999999998754
No 144
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=99.69 E-value=5e-17 Score=158.33 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=32.9
Q ss_pred ceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 395 FCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 395 ~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
|||+|++++|+|+|+|+|++|+++||.+|+.+|.
T Consensus 99 ~~F~I~t~~rt~yl~A~s~~E~~eWi~aI~~~i~ 132 (169)
T 1btk_A 99 YPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIR 132 (169)
T ss_dssp EEEEEEETTCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred ccEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999985
No 145
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=99.69 E-value=4.1e-17 Score=145.07 Aligned_cols=94 Identities=15% Similarity=0.274 Sum_probs=66.9
Q ss_pred ceeEEEEEEecCCCCCC-CCceeEEEEeCCceEEEEecCCC-CCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 292 QTIRQGYLSKRSSNLRG-DWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~-~WkrRwfvL~~~~~l~yy~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
.+++.|||+|+.++..+ +||+|||||.+ ..|+||+...+ .+.
T Consensus 11 ~VirkGWL~k~~~g~~k~~wk~rWFVLt~-~~L~yyKd~~eke~~----------------------------------- 54 (125)
T 1dyn_A 11 LVIRKGWLTINNIGIMKGGSKEYWFVLTA-ENLSWYKDDEEKEKK----------------------------------- 54 (125)
T ss_dssp CEEEEEEEEESCCCGGGTSSEEEEEEEES-SEEEEESSTTCSCEE-----------------------------------
T ss_pred ceEEEEEEEEecCccccCCceeeEEEEec-cceeeecCCcccccc-----------------------------------
Confidence 47999999997666555 59999999995 55666655433 222
Q ss_pred cccccccccccccccccCCc-ccCCcceEEEecCC--------ceEEEEeCCHHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTSTIKVDAD-QSDLRFCFRIISPT--------KNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v~~~~~-~~~r~~~F~I~t~~--------rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
+.|.|....|+.... ...|+|||+|++|+ ++|.|.|+|.+|+++||.+|..|
T Consensus 55 -----G~IpL~~~~vr~v~~~~~~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra 115 (125)
T 1dyn_A 55 -----YMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA 115 (125)
T ss_dssp -----EEEECTTEEEEECCSCSSSSCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred -----eEEECCCceEeccCCCCCCCceEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHHhC
Confidence 234444444432111 12578999999875 49999999999999999999544
No 146
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=7.3e-17 Score=145.84 Aligned_cols=94 Identities=28% Similarity=0.384 Sum_probs=86.3
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 003309 732 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE 811 (832)
Q Consensus 732 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~ 811 (832)
.+...|.+|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD 95 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHH
Q 003309 812 LAVESNFADSEVLAIL 827 (832)
Q Consensus 812 ~A~~~g~~d~~iv~lL 827 (832)
+|+..|+ .+++++|
T Consensus 96 ~A~~~~~--~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGN--EDLAEIL 109 (110)
T ss_dssp HHHHHTC--HHHHHHH
T ss_pred HHHHcCC--HHHHHHh
Confidence 9999999 9999987
No 147
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.69 E-value=3e-17 Score=172.05 Aligned_cols=129 Identities=20% Similarity=0.155 Sum_probs=106.2
Q ss_pred cCCCCcccccccc-cCccccccccccCCC-----------CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC
Q 003309 703 SLERSSSSLTGNS-SDRSSSGSLNLAGTS-----------EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD 770 (832)
Q Consensus 703 ~~~~~~~~l~~~~-~~~~~~~~lll~~~~-----------~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d 770 (832)
..+.|++++|+.. ..+...+..+|+..+ .+++..|..|+||||+||..|+.++|++|+++|++++..|
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~ 123 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccc
Confidence 4478899988732 233333333344433 3455566699999999999999999999999999999998
Q ss_pred --------------CCCCcHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCcHHHHHHHcCCCc-------HHHHHH
Q 003309 771 --------------SRGLTPLHRCILRGKAMFAKLLLT---RGADPRAVNREGKTSLELAVESNFAD-------SEVLAI 826 (832)
Q Consensus 771 --------------~~g~TpLh~A~~~g~~~~v~~Ll~---~gad~~~~~~~g~TpL~~A~~~g~~d-------~~iv~l 826 (832)
..|+||||+|+..|+.++|++|++ +|++++.+|..|.||||+|+..|+.. .+++++
T Consensus 124 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~ 203 (260)
T 3jxi_A 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDL 203 (260)
T ss_dssp EECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred cccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHH
Confidence 689999999999999999999999 99999999999999999999887632 489999
Q ss_pred HhhCC
Q 003309 827 LSDSH 831 (832)
Q Consensus 827 Ll~~g 831 (832)
|+++|
T Consensus 204 Ll~~g 208 (260)
T 3jxi_A 204 LLIKC 208 (260)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99865
No 148
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=99.68 E-value=5.8e-17 Score=150.15 Aligned_cols=99 Identities=24% Similarity=0.500 Sum_probs=73.9
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..++++|||+|+++ ..+.|+||||||. ++.|+||++..+.
T Consensus 12 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~-~~~L~yy~~~~~~-------------------------------------- 51 (125)
T 1eaz_A 12 SAVIKAGYCVKQGA-VMKNWKRRYFQLD-ENTIGYFKSELEK-------------------------------------- 51 (125)
T ss_dssp CCCSEEEEEEEECT-TTCCEEEEEEEEC-SSEEEEESSTTCS--------------------------------------
T ss_pred CCccEEEEEEEeCC-CCCCcceEEEEEe-CCEEEEEcCCCCC--------------------------------------
Confidence 45689999999954 5678999999999 5678888765431
Q ss_pred ccccccccccccccccC---CcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVD---ADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~---~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
.+.+.|.|..+..... .+...++|||+|++++|+|+|+|+|++|+++||.+|+.+|...
T Consensus 52 -~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~W~~al~~~i~~~ 113 (125)
T 1eaz_A 52 -EPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQ 113 (125)
T ss_dssp -SCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred -cceeEEEcccceEEeeccccccCCcCCEEEEEeCCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 1123355544432111 1223568999999999999999999999999999999999753
No 149
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.68 E-value=6e-17 Score=155.23 Aligned_cols=103 Identities=23% Similarity=0.388 Sum_probs=78.7
Q ss_pred CcceeEEEEEEecCC-----CCCCCCceeEEEEeCC--c--eEEEEecCCCCCCCCCCCCccccCcCccCCCcccccccc
Q 003309 290 KVQTIRQGYLSKRSS-----NLRGDWKRRFFVLDSR--G--MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSS 360 (832)
Q Consensus 290 ~~~~~k~G~L~K~~~-----~~~~~WkrRwfvL~~~--~--~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (832)
...++++|||+|++. ...+.|+||||||.++ | .|+||+.....
T Consensus 15 ~~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~---------------------------- 66 (150)
T 1wg7_A 15 KGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKIS---------------------------- 66 (150)
T ss_dssp SCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCS----------------------------
T ss_pred CCCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCC----------------------------
Confidence 356789999999964 2457899999999954 2 77787765310
Q ss_pred ccCCCCCCccccccccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 361 HYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 361 ~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
..+.+.|.|..|.+... ....++|||+|++++ |+|+|+|+|++|+++||.+|+.+|....
T Consensus 67 ----------~~~~g~I~L~~~~~~~~-~~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~~~~ 127 (150)
T 1wg7_A 67 ----------KEPKGSIFLDSCMGVVQ-NNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNF 127 (150)
T ss_dssp ----------SCCSEEECTTTCCEECC-CCSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCcCcEEecccCEEEec-CCCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHHhhh
Confidence 11234577777776543 334678999999996 9999999999999999999999997554
No 150
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=99.68 E-value=8.7e-17 Score=153.72 Aligned_cols=100 Identities=24% Similarity=0.576 Sum_probs=75.9
Q ss_pred cceeEEEEEEecCCC---CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCC
Q 003309 291 VQTIRQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH 367 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~---~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (832)
..++++|||+|+++. ..+.|+||||||+ ++.|+||+++...
T Consensus 15 ~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~-~~~L~yyk~~~~~----------------------------------- 58 (148)
T 1u5f_A 15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALS-KTVFYYYGSDKDK----------------------------------- 58 (148)
T ss_dssp SSEEEEEEEEEECCCSSCSSCSEEEEEEEEE-TTEEEEESSTTCS-----------------------------------
T ss_pred CCccEEEEEEEeCCCCCCcCCCceeEEEEEE-CCEEEEEcCCCCc-----------------------------------
Confidence 467899999999754 3479999999999 6788888765431
Q ss_pred CccccccccccccccccccCC---cccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 368 DEKSAARHTVNLLTSTIKVDA---DQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 368 ~~~~~~~~~i~l~~~~v~~~~---~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
.+.+.|.|..+++...+ ....++|||.|++++ |+|+|+|+|++|+++||.+|+.+|...
T Consensus 59 ----~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~ 121 (148)
T 1u5f_A 59 ----QQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDL 121 (148)
T ss_dssp ----SCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC--
T ss_pred ----ccceEEEcCCcEEEECCCcccCCCCccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 12244666666665322 233557999999987 999999999999999999999998644
No 151
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=99.68 E-value=7.4e-17 Score=144.73 Aligned_cols=98 Identities=19% Similarity=0.410 Sum_probs=71.3
Q ss_pred EEEEEEecCC-------CCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCC
Q 003309 295 RQGYLSKRSS-------NLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH 367 (832)
Q Consensus 295 k~G~L~K~~~-------~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (832)
++|||+|++. ...++|+||||||+ ++.|+||+++.+...+.
T Consensus 1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~-~~~L~yyk~~~~~~~~~------------------------------- 48 (106)
T 1btn_A 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVIN-NQEMGFYKDAKSAASGI------------------------------- 48 (106)
T ss_dssp CEEEEEEEEEECSTTCBCSCCCCEEEEEEEE-TTEEEEESSHHHHHHTC-------------------------------
T ss_pred CccEEEEEEEEeCCCccCCCCChhEEEEEEE-CCEEEEEeCCcccccCC-------------------------------
Confidence 4899999961 35678999999999 67888887654210000
Q ss_pred CccccccccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHH
Q 003309 368 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 368 ~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
...+...|++..+.+....+...++|||+|++++ ++|+|+|+|++|+++||.+|+.|
T Consensus 49 --~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 49 --PYHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp --CSSSCCCEECTTCEEEECSSCCSSSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred --CCCCcceEECCCCEEEEcccccCCccEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 0011234666666655445556789999999876 99999999999999999999864
No 152
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=99.68 E-value=1.2e-16 Score=161.35 Aligned_cols=99 Identities=23% Similarity=0.568 Sum_probs=76.6
Q ss_pred cceeEEEEEEecCCC---CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCC
Q 003309 291 VQTIRQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH 367 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~---~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (832)
..++++|||+|+++. ..+.|+||||||+ ++.|+||+++...
T Consensus 104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~-~~~L~Yyk~~~~~----------------------------------- 147 (211)
T 1u5e_A 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALS-KTVFYYYGSDKDK----------------------------------- 147 (211)
T ss_dssp SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEE-TTEEEEESSTTCS-----------------------------------
T ss_pred CCccEEEEEEEECCCCCcCCCCcEeEEEEEE-CCEEEEEcCCCCc-----------------------------------
Confidence 458999999999753 4679999999999 6788888775431
Q ss_pred CccccccccccccccccccCC---cccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 368 DEKSAARHTVNLLTSTIKVDA---DQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 368 ~~~~~~~~~i~l~~~~v~~~~---~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
.+.+.|.|..+++...+ ....++|||+|++++ |+|+|+|+|++|+++||.+|+.+|..
T Consensus 148 ----~p~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 148 ----QQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQD 209 (211)
T ss_dssp ----SCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ----cceEEEEeCCcEEEEcCCccccCCCCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 12244666666654422 233567999999986 99999999999999999999999863
No 153
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.68 E-value=1.1e-16 Score=149.29 Aligned_cols=99 Identities=28% Similarity=0.480 Sum_probs=73.2
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCC-ceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSR-GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~-~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
..++++|||+|+++ ..+.|+||||||+++ +.|+||+.+...
T Consensus 16 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~d~~~L~yy~~~~~~------------------------------------- 57 (129)
T 1x1g_A 16 GTVVKQGYLAKQGH-KRKNWKVRRFVLRKDPAFLHYYDPSKEE------------------------------------- 57 (129)
T ss_dssp SEEEEEEEEEEECS-SSSSEEEEEEEEEESSCEEEEECSSSCC-------------------------------------
T ss_pred CCEEEEEEEEEECC-CCCCeeeEEEEEeCCCCeEEEeCCCCcC-------------------------------------
Confidence 46789999999954 467899999999964 789999875110
Q ss_pred cccccccccccccccccCCcc--------cCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTSTIKVDADQ--------SDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v~~~~~~--------~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
..+.+.|+|..|.|....+. ..++|||+|++++ ++|+|+|+|++|+++||.+|+.+|.
T Consensus 58 -~~~~g~i~L~~~~v~~~~~~~~p~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~ 124 (129)
T 1x1g_A 58 -NRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTS 124 (129)
T ss_dssp -SSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred -CccceEEECcCCEEEEeCCCCCcccccCCCCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 01223455655554321111 0167999999997 7899999999999999999999874
No 154
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.67 E-value=4.4e-17 Score=179.85 Aligned_cols=177 Identities=18% Similarity=0.165 Sum_probs=148.0
Q ss_pred cceeehhhhcCchhhhHhhhhccccccccccchh-------hhhhhhHHHHHhhhhcccc---CCCCcccccccccCccc
Q 003309 651 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQTS---LERSSSSLTGNSSDRSS 720 (832)
Q Consensus 651 ~~~L~~Av~~~d~~~v~~lL~~~gadvN~~~~~~-------~~~~~l~~~~~ll~~~~~~---~~~~~~~l~~~~~~~~~ 720 (832)
...|+.|+..|+...|..|| +.|+|+|..+..+ ...+++.+++.|+...... .+.+++++++..++...
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~ 99 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDL 99 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHH
Confidence 46789999999988765555 8899999987765 3356678888887755432 45677777776665554
Q ss_pred cccccccCC----CCCCCc-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCccCCCCCcHH
Q 003309 721 SGSLNLAGT----SEGQTM-----------------DDLEGCTLLHLACDSA--DIGMLELLLQYGANINATDSRGLTPL 777 (832)
Q Consensus 721 ~~~lll~~~----~~~~~~-----------------~d~~g~TpLh~Aa~~g--~~~~v~~Ll~~gadvn~~d~~g~TpL 777 (832)
+.. |+.. +++++. .|..|.||||+|+..| +.+++++|+++|++++..|..|+|||
T Consensus 100 v~~--Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L 177 (364)
T 3ljn_A 100 VVA--LVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL 177 (364)
T ss_dssp HHH--HHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred HHH--HHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 433 3444 555555 8889999999999999 99999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCC-----CCCCCCCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 778 HRCILRGKAMFAKLLLTRGAD-----PRAVNREGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 778 h~A~~~g~~~~v~~Ll~~gad-----~~~~~~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|+|+..|+.++|++|+++|++ ++..|..|.||||+|+..|+ .++|++|+++|+
T Consensus 178 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~ga 235 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW--EDVAMRFVEMGI 235 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC--HHHHHHHHTTTC
T ss_pred HHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC--HHHHHHHHHcCC
Confidence 999999999999999999999 99999999999999999999 999999999874
No 155
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.67 E-value=1.7e-16 Score=159.25 Aligned_cols=144 Identities=17% Similarity=0.144 Sum_probs=120.0
Q ss_pred hhhhHHHHHhhhhc------cccCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHH
Q 003309 687 ISSLTLAKAMLLNE------QTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLL 760 (832)
Q Consensus 687 ~~~l~~~~~ll~~~------~~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll 760 (832)
.++...++.++... .+..+.+++++++..++.. ...+|+..|++++..|..|.||||+|+..|+.+++++|+
T Consensus 15 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~--~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 15 QRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIE--IAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML 92 (201)
T ss_dssp TTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred hccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHH--HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 45556666666533 2345678888877666544 445566779999999999999999999999999999999
Q ss_pred -HcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCCC---cHHHHHHHhhCCC
Q 003309 761 -QYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG-ADPRAVNREGKTSLELAVESNFA---DSEVLAILSDSHG 832 (832)
Q Consensus 761 -~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~~~~g~TpL~~A~~~g~~---d~~iv~lLl~~gg 832 (832)
..+++++..|..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..+.. ..+++++|+++|+
T Consensus 93 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga 169 (201)
T 3hra_A 93 KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169 (201)
T ss_dssp HHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTC
T ss_pred hccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCC
Confidence 567899999999999999999999999999999998 99999999999999999988742 1799999999874
No 156
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.67 E-value=1.5e-16 Score=149.52 Aligned_cols=94 Identities=30% Similarity=0.347 Sum_probs=89.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 003309 737 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES 816 (832)
Q Consensus 737 d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~ 816 (832)
...|.||||+||..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHhhCCC
Q 003309 817 NFADSEVLAILSDSHG 832 (832)
Q Consensus 817 g~~d~~iv~lLl~~gg 832 (832)
|+ .+++++|+++|+
T Consensus 91 ~~--~~~v~~Ll~~g~ 104 (136)
T 2jab_A 91 GH--LEIAEVLLKHGA 104 (136)
T ss_dssp TC--HHHHHHHHHTTC
T ss_pred CC--HHHHHHHHHcCC
Confidence 99 999999999874
No 157
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=149.96 Aligned_cols=101 Identities=22% Similarity=0.386 Sum_probs=73.4
Q ss_pred ceeEEEEEEec--CCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 292 QTIRQGYLSKR--SSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 292 ~~~k~G~L~K~--~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
.++++|||+|+ ++ ..+.|+||||||+ ++.|+||+.+.+. .
T Consensus 4 ~v~~~G~L~K~~~~~-~~~~WkrRwfvL~-~~~L~yyk~~~d~------------------------------------~ 45 (134)
T 2y7b_A 4 SVEERGFLTIFEDVS-GFGAWHRRWCVLS-GNCISYWTYPDDE------------------------------------K 45 (134)
T ss_dssp CCCEEEEEEEEEEET-TEEEEEEEEEEEE-TTEEEEESSHHHH------------------------------------T
T ss_pred CceEEeeEEEEcCCC-CCCCcEEEEEEEE-CCEEEEECCCCcc------------------------------------c
Confidence 46799999998 43 4568999999999 5688888754320 0
Q ss_pred ccccccccccccccc---ccCCc-ccCCcceEEEec--CC------------------ceEEEEeCCHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTSTI---KVDAD-QSDLRFCFRIIS--PT------------------KNYTLQAESALDQMDWIEKITG 425 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v---~~~~~-~~~r~~~F~I~t--~~------------------rt~~lqA~s~~e~~~Wi~ai~~ 425 (832)
...+.+.|+|..|.+ ..... ...++|||+|++ |. ++|+|+|+|++|+++||.+|+.
T Consensus 46 ~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~ 125 (134)
T 2y7b_A 46 RKNPIGRINLANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQ 125 (134)
T ss_dssp TSCCSEEEEGGGBCSSSCEECCTTTCCCTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred ccCceEEEEhhhCccccccccchhhccCCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHH
Confidence 112335577777663 32211 135789999987 44 4799999999999999999999
Q ss_pred HHHHH
Q 003309 426 VIASL 430 (832)
Q Consensus 426 ~i~~~ 430 (832)
+|..+
T Consensus 126 ~i~~~ 130 (134)
T 2y7b_A 126 VLVDI 130 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99754
No 158
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.66 E-value=1.3e-16 Score=168.63 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=126.5
Q ss_pred ceeehhhhcCchhhhHhhhh---ccccccccccchhhhhhhhHHHHHhhhhccccCCCCcccccccc-cCcccccccccc
Q 003309 652 HQIWEGVRTNDKKAVYRHIV---NFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNS-SDRSSSGSLNLA 727 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~---~~gadvN~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~-~~~~~~~~lll~ 727 (832)
..|+.|+..|+.+.|..+|. ..+++++.... ..+..+.|++++++.. ..+...+..+|+
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-----------------~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll 77 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEF-----------------KDPETGKTCLLKAMLNLHNGQNDTIALLL 77 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGG-----------------SCTTTCCCHHHHHHHSCBTTBCHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCccc-----------------ccCcCCCCHHHHHHHHHhcCChHHHHHHH
Confidence 56899999999988776663 35666653211 1233467888888764 222333333344
Q ss_pred CCCCC-----------CCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCC--------------CCCcHHHHHHH
Q 003309 728 GTSEG-----------QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS--------------RGLTPLHRCIL 782 (832)
Q Consensus 728 ~~~~~-----------~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~--------------~g~TpLh~A~~ 782 (832)
..|++ ....|..|.||||+|+..|+.+++++|+++|++++..+. .|+||||+|+.
T Consensus 78 ~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~ 157 (273)
T 2pnn_A 78 DVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC 157 (273)
T ss_dssp HHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHH
T ss_pred HhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHH
Confidence 44332 233567899999999999999999999999999999987 79999999999
Q ss_pred cCCHHHHHHHHh---CCCCCCCCCCCCCcHHHHHHHcCCCc-------HHHHHHHhhCC
Q 003309 783 RGKAMFAKLLLT---RGADPRAVNREGKTSLELAVESNFAD-------SEVLAILSDSH 831 (832)
Q Consensus 783 ~g~~~~v~~Ll~---~gad~~~~~~~g~TpL~~A~~~g~~d-------~~iv~lLl~~g 831 (832)
.|+.++|++|++ +|++++.+|..|.||||+|+..|+.. .+++++|+++|
T Consensus 158 ~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g 216 (273)
T 2pnn_A 158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG 216 (273)
T ss_dssp TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh
Confidence 999999999999 99999999999999999999987622 47899998865
No 159
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=99.65 E-value=2.3e-16 Score=145.53 Aligned_cols=105 Identities=14% Similarity=0.334 Sum_probs=75.3
Q ss_pred cceeEEEEEEecCC----C---CCCCCceeEEEEeCCceEEEEecCCCCCC-CCCCCCccccCcCccCCCcccccccccc
Q 003309 291 VQTIRQGYLSKRSS----N---LRGDWKRRFFVLDSRGMLYYYRKQCSKSS-GSGSQLSSQRNSSELGSGLLSRWLSSHY 362 (832)
Q Consensus 291 ~~~~k~G~L~K~~~----~---~~~~WkrRwfvL~~~~~l~yy~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (832)
..+.|+|||.|+.. . .++.|++|||||+ ++.|+||+++.+... +.+
T Consensus 6 ~~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~-~~~L~~yk~~~~~~~~~~~------------------------- 59 (122)
T 1dro_A 6 AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAK-AGRISFYKDQKGYKSNPEL------------------------- 59 (122)
T ss_dssp SSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEES-SSCCBEESSSSHHHHCTTC-------------------------
T ss_pred CceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEE-CCEEEEEeCCcccccCCCc-------------------------
Confidence 35679999988742 1 4579999999999 466677766543110 000
Q ss_pred CCCCCCccccccccccccccccccCCcccCCcceEEEec-CCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 363 HGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIIS-PTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 363 ~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t-~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
...+...|+|..|.+....+...|+|||+|++ +.++|+|||+|++||++||.+|+.+|.
T Consensus 60 -------~~~~~~~i~L~~~~v~~~~d~~kr~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i~ 119 (122)
T 1dro_A 60 -------TFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSD 119 (122)
T ss_dssp -------CSSCCCBCCCSSCCCEECCSSSSSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred -------ccCCCceEECCCCEEEeCCCCCCCCeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 00011346777777765555567899999996 569999999999999999999999985
No 160
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=99.65 E-value=2.7e-16 Score=153.67 Aligned_cols=98 Identities=20% Similarity=0.418 Sum_probs=67.1
Q ss_pred eeEEEEEEec---------CCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccC
Q 003309 293 TIRQGYLSKR---------SSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYH 363 (832)
Q Consensus 293 ~~k~G~L~K~---------~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (832)
++++|||+++ .+...+.|+||||||+ ++.|+||+++.+..
T Consensus 3 v~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~-~~~L~yyk~~~~~~------------------------------ 51 (168)
T 2j59_M 3 AAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLR-GHSLYLYKDKREQT------------------------------ 51 (168)
T ss_dssp CCEEEEEEEEECC------------CCEEEEEEEE-TTEEEEESCTTCC-------------------------------
T ss_pred CcEEEEEeeeeecccCCcccCCCCCCceEEEEEEe-CCEEEEEECCcccc------------------------------
Confidence 5789999942 1345678999999999 67788887764310
Q ss_pred CCCCCcccccccc--ccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 364 GGVHDEKSAARHT--VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 364 ~~~~~~~~~~~~~--i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
..+.+. |.+..|.+....+...++|||+|++++++|+|+|+|++||++||.+|+.++.
T Consensus 52 -------~~~~g~i~l~~~~~~~~~~~~~~~~~~~F~I~t~~r~~~l~A~s~~e~~~Wi~ai~~~~~ 111 (168)
T 2j59_M 52 -------TPSEEEQPISVNACLIDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSN 111 (168)
T ss_dssp --------------CEECSSCEEEECSSSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred -------cccCCceEecccceEEEeccccCCCCCEEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 001112 2333354433344557789999999999999999999999999999998874
No 161
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=99.65 E-value=1.2e-14 Score=151.42 Aligned_cols=191 Identities=20% Similarity=0.301 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hcccc---------hhHHHHHHHHHHhhCCCCCCCcccc
Q 003309 16 IQGLEESAEVLRERSLKFYKGCRKYTEG-------------LGEGY---------DGDIAFASALETFGGGHNDPISVAF 73 (832)
Q Consensus 16 i~~~E~~i~~l~~~l~kl~k~~~~~~~~-------------~~~~~---------~~~~~f~~~l~~f~~~~~~~~~~~~ 73 (832)
+..+|.+++.+++++++|.|.++.|.+. +.+.+ .....|+.++.+++....+.. .
T Consensus 33 ~~~lE~r~d~~k~~~~kl~k~~~~yl~~np~~r~~~~~~~~i~k~~g~~k~~~~p~~~~~L~~~m~~~~~~l~~~s---~ 109 (256)
T 1zww_A 33 FKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDC---N 109 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTTC---------------------CCHHHHHHHHHHHHHHHHCSSS---S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHhhCCCCC---h
Confidence 5678999999999999999999998864 21110 111367777777665433222 2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhH
Q 003309 74 GGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAI 153 (832)
Q Consensus 74 ~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e 153 (832)
.|.+|.+||.++++|...+..+...+...|++||.+|++.+|+.+...||++++.+.+||++..|+.+.
T Consensus 110 ~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~k~----------- 178 (256)
T 1zww_A 110 FGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKI----------- 178 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence 468999999999999999999999999999999999999999999999999999999999998885321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003309 154 LEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLT 221 (832)
Q Consensus 154 ~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~ 221 (832)
++.++..++..|....-++...|..+... +++++..|..|+.+|..||.++++.|.++.|++.+...
T Consensus 179 ~eeEle~A~~~fe~~~e~~~~~m~~l~~~-e~e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~~~~ 245 (256)
T 1zww_A 179 PDEELRQALEKFDESKEIAESSMFNLLEM-DIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIR 245 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999998866 57999999999999999999999999999999987543
No 162
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.64 E-value=9.3e-16 Score=141.00 Aligned_cols=92 Identities=39% Similarity=0.594 Sum_probs=89.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 003309 739 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNF 818 (832)
Q Consensus 739 ~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~ 818 (832)
+|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcHHHHHHHhhCCC
Q 003309 819 ADSEVLAILSDSHG 832 (832)
Q Consensus 819 ~d~~iv~lLl~~gg 832 (832)
.+++++|+++|+
T Consensus 81 --~~~~~~Ll~~g~ 92 (126)
T 1n0r_A 81 --LEVVKLLLEAGA 92 (126)
T ss_dssp --HHHHHHHHHTTC
T ss_pred --HHHHHHHHHcCC
Confidence 999999999763
No 163
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.63 E-value=3e-16 Score=155.53 Aligned_cols=93 Identities=29% Similarity=0.247 Sum_probs=89.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHH
Q 003309 737 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN-REGKTSLELAVE 815 (832)
Q Consensus 737 d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~-~~g~TpL~~A~~ 815 (832)
+..|.||||+|+..|+.+++++|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 4579999999999999999999999 99999999999999999999999999999999999999998 889999999999
Q ss_pred cCCCcHHHHHHHhhCCC
Q 003309 816 SNFADSEVLAILSDSHG 832 (832)
Q Consensus 816 ~g~~d~~iv~lLl~~gg 832 (832)
.|+ .+++++|+++|+
T Consensus 120 ~~~--~~~v~~Ll~~ga 134 (183)
T 3deo_A 120 YVR--PEVVEALVELGA 134 (183)
T ss_dssp TTC--HHHHHHHHHHTC
T ss_pred cCc--HHHHHHHHHcCC
Confidence 999 999999999764
No 164
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=156.20 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=92.5
Q ss_pred cCCCCCCCc---CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 003309 727 AGTSEGQTM---DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 803 (832)
Q Consensus 727 ~~~~~~~~~---~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~ 803 (832)
+..+++++. .+..|.||||+||..|+.+++++|++.|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus 5 l~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d 84 (229)
T 2vge_A 5 LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84 (229)
T ss_dssp -----CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred hccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence 344444443 45567888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHcCCCcHHHHHHHhhCCC
Q 003309 804 REGKTSLELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 804 ~~g~TpL~~A~~~g~~d~~iv~lLl~~gg 832 (832)
..|.||||+|+..|+ .+++++|+++|+
T Consensus 85 ~~g~tpLh~A~~~g~--~~~v~~Ll~~ga 111 (229)
T 2vge_A 85 SHGWTPLHCAASCND--TVICMALVQHGA 111 (229)
T ss_dssp TTCCCHHHHHHHTTC--HHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 999999999999999 999999999874
No 165
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.62 E-value=7.9e-16 Score=157.32 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=91.3
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHH
Q 003309 736 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR-GADPRAVNREGKTSLELAV 814 (832)
Q Consensus 736 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~~~~g~TpL~~A~ 814 (832)
.+..|.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.++|++|+++ |++++.+|..|.||||+|+
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 466799999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HcCCCcHHHHHHHhhCCC
Q 003309 815 ESNFADSEVLAILSDSHG 832 (832)
Q Consensus 815 ~~g~~d~~iv~lLl~~gg 832 (832)
..|+ .++|++|+++|+
T Consensus 149 ~~~~--~~~v~~Ll~~ga 164 (222)
T 3ehr_A 149 WKGY--ADIVQLLLAKGA 164 (222)
T ss_dssp HHTC--HHHHHHHHHHTC
T ss_pred HcCC--HHHHHHHHHcCC
Confidence 9999 999999999774
No 166
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=99.62 E-value=1.3e-15 Score=158.74 Aligned_cols=108 Identities=23% Similarity=0.390 Sum_probs=78.2
Q ss_pred cceeEEEEEE-------ecCCCC----CCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccc
Q 003309 291 VQTIRQGYLS-------KRSSNL----RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLS 359 (832)
Q Consensus 291 ~~~~k~G~L~-------K~~~~~----~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (832)
..++|+|||+ ++.++. +++|+||||||++ +.|+||+++.....
T Consensus 9 ~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~-~~L~yyK~~~~~~~------------------------- 62 (263)
T 3a8p_A 9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKG-CTLLFYETYGKNST------------------------- 62 (263)
T ss_dssp -CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEET-TEEEEESSCCC----------------------------
T ss_pred CCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcC-CEEEEEecCccccc-------------------------
Confidence 4678999999 233444 7899999999995 57777776431000
Q ss_pred cccCCCCCCccccccccccccccccccCCcccCCcceEEEec-CCceEEEEeCCHHHHHHHHHHHHHHHHHHHc
Q 003309 360 SHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIIS-PTKNYTLQAESALDQMDWIEKITGVIASLLS 432 (832)
Q Consensus 360 ~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t-~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 432 (832)
+....+.+.|.|..|.+....+...++|||+|++ +.++|+|||+|++||++||.+|+.++.....
T Consensus 63 --------~~~~~p~g~I~L~~~~v~~~~~~~kk~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~~~ 128 (263)
T 3a8p_A 63 --------EQNSAPRCALFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFA 128 (263)
T ss_dssp -----------CCCSEEEECTTCEEEECTTCSSCSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred --------ccccCccceEEcCCcEEEECCcCCCCCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHhccc
Confidence 0111233557777777764445556899999999 5799999999999999999999999987653
No 167
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.61 E-value=1.9e-16 Score=157.55 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=88.2
Q ss_pred CCcCC-CCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC------HHHHHHHHhCCCCCCC
Q 003309 733 QTMDD-LEGCTLLHLACDSADI----GMLELLLQYGANINATDSRGLTPLHRCILRGK------AMFAKLLLTRGADPRA 801 (832)
Q Consensus 733 ~~~~d-~~g~TpLh~Aa~~g~~----~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~------~~~v~~Ll~~gad~~~ 801 (832)
++..+ ..|+||||+|+..|+. +++++||++|+++|.+|..|+||||+|+..|+ .+++++|+++|++++.
T Consensus 30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 34444 6799999999999985 59999999999999999999999999999987 6889999999999999
Q ss_pred CCCCCC-cHHHHHHHcCCC---cHHHHHHHhh-CCC
Q 003309 802 VNREGK-TSLELAVESNFA---DSEVLAILSD-SHG 832 (832)
Q Consensus 802 ~~~~g~-TpL~~A~~~g~~---d~~iv~lLl~-~gg 832 (832)
+|..|. ||||+|+..+.. ..+++++|++ +|+
T Consensus 110 ~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga 145 (186)
T 3t8k_A 110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL 145 (186)
T ss_dssp CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC
T ss_pred cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC
Confidence 999999 999999996542 1569999999 764
No 168
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.60 E-value=5.9e-16 Score=161.02 Aligned_cols=93 Identities=29% Similarity=0.247 Sum_probs=89.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHH
Q 003309 737 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN-REGKTSLELAVE 815 (832)
Q Consensus 737 d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~-~~g~TpL~~A~~ 815 (832)
+..|.||||+||..|+.+++++|++ |+++|.+|..|+||||+|+..|+.++|++|+++|++++.++ ..|.||||+|+.
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence 3579999999999999999999999 99999999999999999999999999999999999999998 889999999999
Q ss_pred cCCCcHHHHHHHhhCCC
Q 003309 816 SNFADSEVLAILSDSHG 832 (832)
Q Consensus 816 ~g~~d~~iv~lLl~~gg 832 (832)
.|+ .++|++|+++|+
T Consensus 121 ~g~--~~~v~~Ll~~ga 135 (244)
T 3ui2_A 121 YVR--PEVVEALVELGA 135 (244)
T ss_dssp TTC--HHHHHHHHHTTC
T ss_pred cCC--HHHHHHHHHCCC
Confidence 999 999999999874
No 169
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=137.97 Aligned_cols=110 Identities=20% Similarity=0.318 Sum_probs=75.5
Q ss_pred cceeEEEEEEec-----CCC-CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCC
Q 003309 291 VQTIRQGYLSKR-----SSN-LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHG 364 (832)
Q Consensus 291 ~~~~k~G~L~K~-----~~~-~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (832)
..+.|+|||+++ ++. ..++|++|||||+ ++.|+||+++.....+.. +.+
T Consensus 6 ~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~-~~~L~~yKd~~~~~~~~~------------------------~~~ 60 (124)
T 3pp2_A 6 KTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLE-GGVLTFFKDSKTSAAGGL------------------------RQP 60 (124)
T ss_dssp ---CEEEEEEEEEEEETTEECSSCCCEEEEEEEE-TTEEEEESCSBCC---CB------------------------CCG
T ss_pred CcEEEEEEEEEEEeccCCccCCCCCceEEEEEEE-CCEEEEEecCccccccCc------------------------cCc
Confidence 346799999977 222 2358999999999 567777776543211100 000
Q ss_pred CCCCccccccccccccccccccCC-cccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 365 GVHDEKSAARHTVNLLTSTIKVDA-DQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 365 ~~~~~~~~~~~~i~l~~~~v~~~~-~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.....+...|+|..|.+...+ +...|+|+|+|.+++ ++|.|||+|++||++||.+|+.||.
T Consensus 61 ---~~~~~~~~~i~L~~a~v~~~~~d~~krk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 61 ---SKFSTPEYTVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp ---GGGCSEEEEEECTTCEEEECCGGGCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred ---ccccCCcceEEcCCCEEEecccccCCCceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 000123355777778776654 566789999999875 7999999999999999999999985
No 170
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=99.58 E-value=1.7e-15 Score=157.97 Aligned_cols=100 Identities=21% Similarity=0.367 Sum_probs=72.8
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCc------eEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCC
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRG------MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHG 364 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~------~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (832)
..++++|||+|+ ++||||||||++++ .|+||+++.+...+
T Consensus 8 ~~v~k~G~L~K~-----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~----------------------------- 53 (264)
T 1qqg_A 8 SDVRKVGYLRKP-----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHK----------------------------- 53 (264)
T ss_dssp -CEEEEEEEECT-----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTT-----------------------------
T ss_pred CCccEEEEEEEC-----CCCEeEEEEEECCCCCCCCCEEEEECCCcccccc-----------------------------
Confidence 467899999998 68999999999762 89999875430000
Q ss_pred CCCCccccccccccccccc-cccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 365 GVHDEKSAARHTVNLLTST-IKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 365 ~~~~~~~~~~~~i~l~~~~-v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
...+.+.|+|..|. |.. ..+..++|||.|+++.|+|+|+|+|++|+++||.+|+.++...
T Consensus 54 -----~~~p~g~I~L~~~~~V~~-~~~~~~~~~F~I~t~~rty~l~A~se~e~~~Wi~aL~~~~~~~ 114 (264)
T 1qqg_A 54 -----SSAPKRSIPLESCFNINK-RADSKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRA 114 (264)
T ss_dssp -----CSCCSEEEEGGGEEEEEE-ECCSSCSSEEEEEESSCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred -----ccCcceEEEeeceEEEEe-ccCCCCCcEEEEEECCEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 01223456776654 322 2234678999999999999999999999999999999998654
No 171
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=99.57 E-value=3.5e-15 Score=152.92 Aligned_cols=97 Identities=26% Similarity=0.520 Sum_probs=77.2
Q ss_pred CcceeEEEEEEecCCCC----CCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCC
Q 003309 290 KVQTIRQGYLSKRSSNL----RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG 365 (832)
Q Consensus 290 ~~~~~k~G~L~K~~~~~----~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (832)
...++++|||+|+++.. ++.|+||||||+ ++.|+||+++.+
T Consensus 55 ~~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~-~~~L~Yyk~~~~---------------------------------- 99 (228)
T 3tfm_A 55 KQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLR-QSKLMYFENDSE---------------------------------- 99 (228)
T ss_dssp CCCSSEEEEEEECGGGCSSSCGGGCEEEEEEEC-SSEEEEESSTTC----------------------------------
T ss_pred CCCcceEEEEEEECCCcCCcccCCceEEEEEEe-CCEEEEEeCCCC----------------------------------
Confidence 35678999999997542 378999999999 678888877543
Q ss_pred CCCccccccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 366 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 366 ~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
..+.+.|.|..+.+.. +...++|||+|++++|+|+|+|+|++|+++||.+|+.+|.
T Consensus 100 -----~~~~g~I~L~~~~~v~--~~~~k~~~F~I~t~~r~~~l~A~s~~e~~~Wv~aL~~~i~ 155 (228)
T 3tfm_A 100 -----EKLKGTVEVRSAKEII--DNTNKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHS 155 (228)
T ss_dssp -----CSEEEEEEGGGCSEEE--EETTTTSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred -----cceeEEEEcCCCEEec--cCCCCCcEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 1233557777776543 2236789999999999999999999999999999999996
No 172
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.57 E-value=3.6e-15 Score=130.05 Aligned_cols=92 Identities=33% Similarity=0.423 Sum_probs=81.3
Q ss_pred CCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Q 003309 705 ERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRG 784 (832)
Q Consensus 705 ~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g 784 (832)
|.|++++++..+... ....|+..|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~--~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLE--VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHH--HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 467777777665544 344566788999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCC
Q 003309 785 KAMFAKLLLTRGAD 798 (832)
Q Consensus 785 ~~~~v~~Ll~~gad 798 (832)
+.+++++|+++|++
T Consensus 80 ~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 80 HLEVVKLLLEAGAY 93 (93)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999985
No 173
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.57 E-value=8.1e-15 Score=161.60 Aligned_cols=99 Identities=17% Similarity=0.423 Sum_probs=72.1
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..++|+|||.|+++...++||||||||+ ++.|+||+++.+..
T Consensus 267 ~~~~k~G~L~K~g~~~~k~WKkRwFVL~-~~~L~YYk~~~d~~------------------------------------- 308 (386)
T 3lju_X 267 RNYLKEGYMEKTGPKQTEGFRKRWFTMD-DRRLMYFKDPLDAF------------------------------------- 308 (386)
T ss_dssp CCCSEEEEEEECCTTSCSCCEEEEEEEE-TTEEEEESSTTCSB-------------------------------------
T ss_pred cccceeeeEEEECCCCCCCCcccEEEEE-CCEEEEEecCCCcc-------------------------------------
Confidence 3467999999997666589999999999 78888888764421
Q ss_pred ccccccccccccccc------cCCccc--CCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIK------VDADQS--DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~------~~~~~~--~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
+.+.|.|..+... .+.... .++|||+|+++.|+|+|+|+|++|+++||.||+.+|..
T Consensus 309 --~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~~F~I~t~~rty~l~A~s~~e~~~Wi~aL~~~i~~ 373 (386)
T 3lju_X 309 --ARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAVDR 373 (386)
T ss_dssp --CSEEEECCCGGGTCEEEESCCTTCCSCCSCEEEEEECSSCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred --cceEEEeecceeeeeecccCCccccccCCCcEEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 1122333222211 111111 22699999999999999999999999999999999863
No 174
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.55 E-value=1.6e-15 Score=137.80 Aligned_cols=107 Identities=24% Similarity=0.287 Sum_probs=93.4
Q ss_pred ccCCCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Q 003309 702 TSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCI 781 (832)
Q Consensus 702 ~~~~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~ 781 (832)
+..+.+++++++..+... ....|+..+++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 6 d~~g~t~L~~A~~~~~~~--~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAE--EVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp SCSSCCHHHHHHHHTCHH--HHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred CCCCCCHHHHHHHcCCHH--HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 345677888877666544 444567788999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 003309 782 LRGKAMFAKLLLTRGADPRAVNREGKTSL 810 (832)
Q Consensus 782 ~~g~~~~v~~Ll~~gad~~~~~~~g~TpL 810 (832)
..|+.+++++|+++|++++.++..|.||-
T Consensus 84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999999999999884
No 175
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=99.55 E-value=2.2e-14 Score=130.39 Aligned_cols=102 Identities=21% Similarity=0.390 Sum_probs=74.2
Q ss_pred EEEEEE-----ecCCC-CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCC
Q 003309 295 RQGYLS-----KRSSN-LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD 368 (832)
Q Consensus 295 k~G~L~-----K~~~~-~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (832)
++|+|. |++++ ..++|+||||+|.+ ..||||+...-. +. ...+
T Consensus 3 ~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g-~~L~yf~~~~~~--~~----------------------------~~~~ 51 (126)
T 2dtc_A 3 MEGPLRRKTLLKEGRKPALSSWTRYWVVLSG-ATLLYYGAKSLR--GT----------------------------DRKH 51 (126)
T ss_dssp EEEEEEEEEEEBTTBCCSSCCCEEEEEEEET-TEEEEEEBSSSC--CS----------------------------SGGG
T ss_pred eeeeeeeeehhhcCCcccccCcccEEEEEeC-CEEEEEcccccc--cc----------------------------cccc
Confidence 577776 44554 36899999999994 556677654210 00 0001
Q ss_pred ccccccccccccccccccCCcccCCcceEEEecC--CceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 369 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP--TKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 369 ~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~--~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.+..+.+.|.|..+.|. ..+...+++||+|.++ +..|.|||+|++++++||.+|..||.
T Consensus 52 ~~~~P~~~i~L~g~~V~-~~e~~~~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~ 112 (126)
T 2dtc_A 52 YKSTPGKKVSIVGWMVQ-LPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACK 112 (126)
T ss_dssp BCSSCSEEEECTTCEEE-CCCCTTSTTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cccCCCceEEeCCCEEE-ecCCCCCCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 12234566888888887 4666678999999976 58899999999999999999999875
No 176
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=99.54 E-value=1.2e-14 Score=158.30 Aligned_cols=95 Identities=27% Similarity=0.572 Sum_probs=75.4
Q ss_pred ceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
.++++|||+|+++. .+.|+||||||+ ++.|+||+++.+.
T Consensus 212 ~~~k~G~L~K~g~~-~k~WkkRwFVL~-~~~L~Yyk~~~~~--------------------------------------- 250 (347)
T 2r09_A 212 NPDREGWLLKLGGR-VKTWKRRWFILT-DNCLYYFEYTTDK--------------------------------------- 250 (347)
T ss_dssp CCCEEEEEEEECSS-SCCEEEEEEEEE-TTEEEEESSTTCS---------------------------------------
T ss_pred ccccCCeeEecCCC-cccceeEEEEEc-CCEEEEEcCCCcc---------------------------------------
Confidence 46799999999654 678999999999 6788888775431
Q ss_pred cccccccccccccccCCcccCCcceEEEecC----------------------CceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIKVDADQSDLRFCFRIISP----------------------TKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~----------------------~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.+.+.|.|..|+|.. .+...++|||+|.++ .|+|+|+|+|++|+++||.+|+.+|.
T Consensus 251 ~p~G~I~L~~~~v~~-~~~~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~ 328 (347)
T 2r09_A 251 EPRGIIPLENLSIRE-VEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS 328 (347)
T ss_dssp SCSEEEECTTCEEEE-ECCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEcCCeEEEE-ccCCCCCCEEEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 123457777777654 234578899999987 38999999999999999999999885
No 177
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.51 E-value=2.9e-15 Score=160.81 Aligned_cols=107 Identities=18% Similarity=0.057 Sum_probs=88.1
Q ss_pred CCccccccccc-CccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Q 003309 706 RSSSSLTGNSS-DRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRG 784 (832)
Q Consensus 706 ~~~~~l~~~~~-~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g 784 (832)
.|++++++... .+...+..+|+..|++++..|..|+||||+|+..|+.+++++||++|++++.+|..|.||||+|+..|
T Consensus 191 ~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~ 270 (301)
T 2b0o_E 191 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 270 (301)
T ss_dssp ECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHT
T ss_pred ccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 46777777653 23444555677779999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 003309 785 KAMFAKLLLTRGADPRAVNREGKTSLELAVESNF 818 (832)
Q Consensus 785 ~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~~g~ 818 (832)
+.+++++|+++|++ .|.||||+|+..|+
T Consensus 271 ~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 271 HKECEELLEQAQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp CHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred CHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence 99999999999987 57899999999987
No 178
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.49 E-value=1e-15 Score=169.13 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=54.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC--CCCCCCcHHHH
Q 003309 738 LEGCTLLHLACDSADIGMLELLLQYGANI---NATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA--VNREGKTSLEL 812 (832)
Q Consensus 738 ~~g~TpLh~Aa~~g~~~~v~~Ll~~gadv---n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~--~~~~g~TpL~~ 812 (832)
..|.||||+||..|+.++|++|+++|+++ +..+.. +||||+|+..|+.++|++|+++|++++. .|..|.||||+
T Consensus 126 ~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~ 204 (376)
T 2aja_A 126 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 204 (376)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHH
Confidence 34556666666666666666666666542 111112 5666666666666666666666666555 55566666666
Q ss_pred HH-HcCCCcHHHHHHHhhC
Q 003309 813 AV-ESNFADSEVLAILSDS 830 (832)
Q Consensus 813 A~-~~g~~d~~iv~lLl~~ 830 (832)
|+ ..|+ .++|++|+++
T Consensus 205 Aa~~~G~--~eiv~~Ll~~ 221 (376)
T 2aja_A 205 AAVGRGH--HNVINFLLDC 221 (376)
T ss_dssp HHSTTCC--HHHHHHHTTS
T ss_pred HHHHCCC--HHHHHHHHhC
Confidence 66 6666 6666666654
No 179
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=99.49 E-value=2.1e-13 Score=126.04 Aligned_cols=133 Identities=21% Similarity=0.375 Sum_probs=79.2
Q ss_pred eEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcC-ccCCCccccccccccCCCCCC----
Q 003309 294 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSS-ELGSGLLSRWLSSHYHGGVHD---- 368 (832)
Q Consensus 294 ~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---- 368 (832)
+|+|||+|+ .++.+.|++|||||. +..|||++...........-.....++. +.=.+ +..|+......+...
T Consensus 2 ~k~G~L~~~-~~~~~~w~~~~fvL~-~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~-~n~~fh~~~~~~~e~~~~~ 78 (150)
T 2fjl_A 2 IKNGILYLE-DPVNHEWYPHYFVLT-SSKIYYSEETSSDQGNEDEEEPKEASGSTELHSS-LEVLFQGPNPAILEPEREH 78 (150)
T ss_dssp CEEEEEEEE-ETTTTEEEEEEEEEE-TTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCC-SSSGGGSSCSTTSCTTCSS
T ss_pred CcceEEEee-cCCCCCceEeEEEEE-CCEEEEEeeccccccccCcccccccCCchhhccc-chhccccCCccccchhHhc
Confidence 589999999 457889999999999 6777776532210000000000000000 00000 011111111110000
Q ss_pred ------ccccccccccccccccccCC-cccCCcceEEEecCC---ceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 369 ------EKSAARHTVNLLTSTIKVDA-DQSDLRFCFRIISPT---KNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 369 ------~~~~~~~~i~l~~~~v~~~~-~~~~r~~~F~I~t~~---rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
-.....+.|+|..|+|...+ ...+++|+|+|.+++ ++|.|.|+|.+||.+||.+|+.|+..
T Consensus 79 l~E~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~~ 149 (150)
T 2fjl_A 79 LDENSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT 149 (150)
T ss_dssp SCTTTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 01223578999999986543 234689999999885 59999999999999999999999753
No 180
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=99.47 E-value=6e-14 Score=149.84 Aligned_cols=100 Identities=21% Similarity=0.324 Sum_probs=68.1
Q ss_pred CCcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCC-CCCCCCCCccccCcCccCCCccccccccccCCCCC
Q 003309 289 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSK-SSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH 367 (832)
Q Consensus 289 ~~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (832)
....|.++|||+|+++. .++|+||||||+ ++.||||++..+. +.+.+
T Consensus 164 ~~~~p~~~G~L~k~~~~-~k~WkkR~fvL~-~~~L~yyk~~~~~~~~~~i------------------------------ 211 (291)
T 3tca_A 164 SIIVPELEGALYLKEDG-KKSWKRRYFLLR-ASGIYYVPKGKTKTSRDLA------------------------------ 211 (291)
T ss_dssp SCCCCCCEEEEEEECTT-SSCEEEEEEEEC-SSEEEECCTTCCSSTTTCE------------------------------
T ss_pred CCCCCceEEEEEEeCCC-CCCceEEEEEEe-CCEEEEEecCccccccCce------------------------------
Confidence 34567899999999654 578999999999 4567777665432 22210
Q ss_pred CccccccccccccccccccC-----CcccCCcceEEEecCC------ceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 368 DEKSAARHTVNLLTSTIKVD-----ADQSDLRFCFRIISPT------KNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 368 ~~~~~~~~~i~l~~~~v~~~-----~~~~~r~~~F~I~t~~------rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
.-+++..+.+... .....++|||.|++++ ++|+|+|+|++|+..||.||+.|.
T Consensus 212 -------~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak 275 (291)
T 3tca_A 212 -------CFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAK 275 (291)
T ss_dssp -------EEEEGGGCEEEEECSHHHHHCCSSSCEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred -------eeccceeEEEEecCccccccCCCCCeEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 0011122222110 1123568999999865 579999999999999999999886
No 181
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.46 E-value=4e-16 Score=172.34 Aligned_cols=146 Identities=10% Similarity=0.016 Sum_probs=109.8
Q ss_pred ceeehhhhcCchhhhHhhhhccccccc---cccchhhhhhhhHHHHHhhhhccccCCCCcccccccccCccccccccccC
Q 003309 652 HQIWEGVRTNDKKAVYRHIVNFEVDVN---AVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG 728 (832)
Q Consensus 652 ~~L~~Av~~~d~~~v~~lL~~~gadvN---~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~lll~~ 728 (832)
..|+.|+..|+.+.|..+| +.|+... ..+.. +.+|+++|+..++... ..+|+.
T Consensus 94 T~Lh~Aa~~G~~e~v~~Ll-~~ga~~~~~~~~~~~---------------------~~tpL~~Aa~~G~~ei--v~~Ll~ 149 (376)
T 2aja_A 94 VICFVAAITGCSSALDTLC-LLLTSDEIVKVIQAE---------------------NYQAFRLAAENGHLHV--LNRLCE 149 (376)
T ss_dssp HHHHHHHHHCCHHHHHHHT-TC--CCSSCC--CHH---------------------HHHHHHHHHHTTCHHH--HHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHH-HcCCcHHHHHHhccC---------------------CCCHHHHHHHcCCHHH--HHHHHh
Confidence 5789999999988776555 7777221 11111 1235556655554444 344555
Q ss_pred CCCC---CCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc--cCCCCCcHHHHHH-HcCCHHHHHHHHhCCCCCCCC
Q 003309 729 TSEG---QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINA--TDSRGLTPLHRCI-LRGKAMFAKLLLTRGADPRAV 802 (832)
Q Consensus 729 ~~~~---~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~--~d~~g~TpLh~A~-~~g~~~~v~~Ll~~gad~~~~ 802 (832)
.|++ .+..+.+ .||||+||..|+.++|++|+++|++++. .|..|+||||+|+ ..|+.++|++|+++|++
T Consensus 150 ~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~---- 224 (376)
T 2aja_A 150 LAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---- 224 (376)
T ss_dssp SCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH----
T ss_pred CCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc----
Confidence 5654 2333333 9999999999999999999999999987 8889999999999 99999999999998753
Q ss_pred CCCCCcHHHHHHHcCCCcHHHHHHHhhCC
Q 003309 803 NREGKTSLELAVESNFADSEVLAILSDSH 831 (832)
Q Consensus 803 ~~~g~TpL~~A~~~g~~d~~iv~lLl~~g 831 (832)
|.|||++|+..|+ .+++++|+++|
T Consensus 225 ---~~taL~~Aa~~g~--~evv~lL~~~g 248 (376)
T 2aja_A 225 ---LAYAEIHEFEYGE--KYVNPFIARHV 248 (376)
T ss_dssp ---HHHHHHCTTTTTT--TTHHHHHHHHH
T ss_pred ---cchHHHHHHHCCC--HHHHHHHHhcC
Confidence 8899999999999 78999999865
No 182
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.45 E-value=1.4e-13 Score=151.53 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=89.4
Q ss_pred CcCCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCccC--CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 003309 734 TMDDLEGCTLLHLACDS-ADIGMLELLLQYGANINATD--SRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL 810 (832)
Q Consensus 734 ~~~d~~g~TpLh~Aa~~-g~~~~v~~Ll~~gadvn~~d--~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~~~~g~TpL 810 (832)
+..+..+.||||.|+.. |+++++++||.+|+++|..| ..|+||||+|+..|+.++|++|+++|++++.+|..|.|||
T Consensus 193 ~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpL 272 (368)
T 3jue_A 193 DLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL 272 (368)
T ss_dssp ----CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred ccccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 33455678999999999 99999999999999999998 7899999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHhhCCC
Q 003309 811 ELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 811 ~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|+|+..|+ .++|++|+++|+
T Consensus 273 h~A~~~g~--~~~v~~LL~~Ga 292 (368)
T 3jue_A 273 HHATILGH--TGLACLFLKRGA 292 (368)
T ss_dssp HHHHHHTC--HHHHHHHHHTTC
T ss_pred HHHHHcCc--HHHHHHHHHCcC
Confidence 99999999 999999999875
No 183
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=5.7e-13 Score=120.70 Aligned_cols=98 Identities=15% Similarity=0.289 Sum_probs=75.6
Q ss_pred cceeEEEEEEecCCC--CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCC
Q 003309 291 VQTIRQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD 368 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~--~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (832)
..|..++||.++..+ ..|+||||||+|. +..|+||+++++..
T Consensus 7 ~~pel~~~l~~~~pkk~tlK~~KrrWFvlk-~~~L~YyK~kee~~----------------------------------- 50 (137)
T 2ys3_A 7 GIPELKDHLRIFRPRKLTLKGYRQHWVVFK-ETTLSYYKSQDEAP----------------------------------- 50 (137)
T ss_dssp SCCCEECCCEECCTTSCCSSSSCCCEEEEC-SSCEEEESSTTTTT-----------------------------------
T ss_pred CCcchhHHHHhhCccccccccceeEEEEEe-CCEEEEECCchhcc-----------------------------------
Confidence 456789999888644 3468999999999 67888887765420
Q ss_pred ccccccccccccccccccCCcccCCcceEEEecCC----ceEEEEeCCHHHHHHHHHHHHHH
Q 003309 369 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT----KNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 369 ~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~----rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
..+.+.|+|..|.|.++.....++|+|.+..|. ++|.|.|+|++++.+||.|++.|
T Consensus 51 --~ePig~I~L~gceV~pd~~~~~~kf~ikl~iPs~~g~r~y~l~cdsEeqy~~WMaA~rlA 110 (137)
T 2ys3_A 51 --GDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLA 110 (137)
T ss_dssp --SCCSCCBCTTTCEEEECCBGGGTBEEEEEEEECSSSEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred --CCCceEEECCCCEEeccccccCCceEEEEEccCCCCceEEEEECCCHHHHHHHHHHHHHh
Confidence 123356888899987654334668999888764 89999999999999999999865
No 184
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.42 E-value=1.1e-13 Score=159.32 Aligned_cols=105 Identities=20% Similarity=0.105 Sum_probs=84.3
Q ss_pred CCCccccccc-ccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc
Q 003309 705 ERSSSSLTGN-SSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILR 783 (832)
Q Consensus 705 ~~~~~~l~~~-~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~ 783 (832)
+.|++++|+. ...+...+..+|+..|+++|.+|..|+||||+||..|+.++|++||++||++|.+|..|+||||+|+..
T Consensus 171 g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~ 250 (497)
T 3lvq_E 171 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250 (497)
T ss_dssp CBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHT
T ss_pred cchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 3578888865 445555666677789999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 003309 784 GKAMFAKLLLTRGADPRAVNREGKTSLELAVE 815 (832)
Q Consensus 784 g~~~~v~~Ll~~gad~~~~~~~g~TpL~~A~~ 815 (832)
|+.+++++|+++|++++. +|+|.+..
T Consensus 251 ~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 251 HHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp TCHHHHHHHHHTCC------------------
T ss_pred CCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 999999999999999987 46665544
No 185
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.36 E-value=1.3e-12 Score=118.45 Aligned_cols=97 Identities=21% Similarity=0.435 Sum_probs=62.9
Q ss_pred EEEEEEe-cCCCCCC-CCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccc
Q 003309 295 RQGYLSK-RSSNLRG-DWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (832)
Q Consensus 295 k~G~L~K-~~~~~~~-~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (832)
.+|||.+ +.++.++ +|+||||||. ++.|+||+.+..+.. ..
T Consensus 3 ~eGwl~~pk~~~~~k~~Wkkr~~vL~-~~kL~~y~~~~~~~~------------------------------------~~ 45 (117)
T 2rov_A 3 LEGWLSLPVRNNTKKFGWVKKYVIVS-SKKILFYDSEQDKEQ------------------------------------SN 45 (117)
T ss_dssp SEEEEECCCCSSSSCCCCCEEEEEEE-TTEEEEESCHHHHHT------------------------------------TC
T ss_pred eEEEEEeecCCCccCCCcEEEEEEEE-CCEEEEEECCCCccc------------------------------------CC
Confidence 4899996 2245667 8999999999 566777765432100 00
Q ss_pred cccccccccc----ccc----cCCcccCCcceEEEec------CCceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 373 ARHTVNLLTS----TIK----VDADQSDLRFCFRIIS------PTKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 373 ~~~~i~l~~~----~v~----~~~~~~~r~~~F~I~t------~~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
+...|+|..+ .|. ......+.++.|+|++ +.++++|.|+|++|+++||.+|+.+|.
T Consensus 46 p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 46 PYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp CSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred ceEEEECcccEEEEEcccccccccccccCCcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 0112222111 010 1223345578999986 359999999999999999999998874
No 186
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=4.4e-12 Score=112.35 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=70.2
Q ss_pred cceeEEEEEEecCC-CCCCCCceeEEEEeCCc-----eEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCC
Q 003309 291 VQTIRQGYLSKRSS-NLRGDWKRRFFVLDSRG-----MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHG 364 (832)
Q Consensus 291 ~~~~k~G~L~K~~~-~~~~~WkrRwfvL~~~~-----~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (832)
..++|+|||+++.- .+.+.|+||||+|..+. .|-||+.+++...|
T Consensus 10 e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~----------------------------- 60 (127)
T 2d9w_A 10 DGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRC----------------------------- 60 (127)
T ss_dssp CCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSC-----------------------------
T ss_pred CccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccC-----------------------------
Confidence 45679999999974 56667999999998632 47777776442111
Q ss_pred CCCCccccccccccccccccccCCccc----CCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHH
Q 003309 365 GVHDEKSAARHTVNLLTSTIKVDADQS----DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 365 ~~~~~~~~~~~~i~l~~~~v~~~~~~~----~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
..++..|.|..|....+.+.. ...++|.|.|++|+|.|.|+++ |+.+||.+|...
T Consensus 61 ------~~~rrVIrLsdCisV~~~~~e~~~pk~~~aF~l~T~er~~~laAe~~-E~~~Wi~~ic~~ 119 (127)
T 2d9w_A 61 ------EAARKVIRLSDCLRVAEAGGEASSPRDTSAFFLETKERLYLLAAPAA-ERGDWVQAICLL 119 (127)
T ss_dssp ------SCCEEEECGGGEEEEEECCSCSSSCSSCEEEEEEESSCEEEEEECHH-HHHHHHHHHHHH
T ss_pred ------CCCceEEEhhhCCeEecccCccCCCCcceEEEEEeCCcEEEEEeCcH-HHHHHHHHHHHH
Confidence 112345677666433222221 3458999999999999999975 899999999765
No 187
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.34 E-value=2.7e-12 Score=135.95 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=85.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCC------ccCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 003309 740 GCTLLHLACDSADIGMLELLLQYGANIN------ATDSRGLTPLHRCILR---GKAMFAKLLLTRGADPRAVNREGKTSL 810 (832)
Q Consensus 740 g~TpLh~Aa~~g~~~~v~~Ll~~gadvn------~~d~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~~~~g~TpL 810 (832)
..++|+.|+..|+.+.+..++..|++++ ..|..|+||||+|+.. |+.+++++|+++|++++.+|..|.|||
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL 209 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence 4579999999999999999999999954 4578899999999999 899999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHhhCCC
Q 003309 811 ELAVESNFADSEVLAILSDSHG 832 (832)
Q Consensus 811 ~~A~~~g~~d~~iv~lLl~~gg 832 (832)
|+|+..|+ .++|++|+++|+
T Consensus 210 h~A~~~g~--~~~v~~Ll~~ga 229 (278)
T 1dcq_A 210 HYCCLTDN--AECLKLLLRGKA 229 (278)
T ss_dssp HHHHHTTC--HHHHHHHHHTTC
T ss_pred HHHHHcCC--HHHHHHHHHcCC
Confidence 99999999 999999999875
No 188
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=99.33 E-value=1.5e-12 Score=134.90 Aligned_cols=107 Identities=20% Similarity=0.381 Sum_probs=75.7
Q ss_pred cceeEEEEEEec-----CC------CCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccc
Q 003309 291 VQTIRQGYLSKR-----SS------NLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLS 359 (832)
Q Consensus 291 ~~~~k~G~L~K~-----~~------~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (832)
..+.|+|||.++ ++ ..++.|++|||||. ++.|+||+.......
T Consensus 9 ~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLk-g~~L~fYKde~~~~~------------------------- 62 (279)
T 3a8n_A 9 GTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLK-GCTLFFYETDGRSGI------------------------- 62 (279)
T ss_dssp -CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEE-TTEECCBCCC------------------------------
T ss_pred CceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEe-CCEEEEEeccccccc-------------------------
Confidence 456799999643 11 13578999999999 677777776543110
Q ss_pred cccCCCCCCccccccccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 360 SHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 360 ~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
+....+...|.|..|.+...++...++|+|+|.+++ +.|.|||+|++||++||.+|+.++....
T Consensus 63 --------~~~~~p~~~I~L~ga~v~~a~d~~kKk~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~~~~ 127 (279)
T 3a8n_A 63 --------DHNSVPKHAVWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAV 127 (279)
T ss_dssp -----------CCCSSCCBCCSCEECCCTTSSSSCSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred --------ccccCCCceEeccCcEEEeccccCCCCcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHhhhc
Confidence 001122345777778776556667789999998764 7899999999999999999999997543
No 189
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=99.33 E-value=1.7e-10 Score=120.07 Aligned_cols=195 Identities=13% Similarity=0.102 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHH
Q 003309 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVL 95 (832)
Q Consensus 16 i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l 95 (832)
+...+..+..++.+++++.|.++.|++........+..|++++..+...... ....+..++..+.. ....+
T Consensus 54 Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l~~~~~~l~~~~~~------~~~~~~~~~~~~~~---~~~d~ 124 (251)
T 2fic_A 54 FEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDWP------GRDEANKIAENNDL---LWMDY 124 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTST------THHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC------CchhHHHHHHHHHH---HHHHH
Confidence 4567889999999999999999999999888777788999999886432211 12345555555543 23344
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCC--chhHHhHHHHHHHHHHHHHHHHHHHHH
Q 003309 96 RSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGT--KTDVAAILEEELHSARSAFEQARFSLV 173 (832)
Q Consensus 96 ~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k--~~~~~~e~~~~l~~~r~~f~~~sld~~ 173 (832)
...+...++.||..|+ ..++.++...++-+..+.+||.+..++.++.+++ ++.++..++.++..++..|....-++.
T Consensus 125 ~~~l~~~vi~Pl~~~~-~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L~ 203 (251)
T 2fic_A 125 HQKLVDQALLTMDTYL-GQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQ 203 (251)
T ss_dssp HHHHHHHTHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678999999999 6799999999999999999999999987775443 455678889999999999999998999
Q ss_pred HHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003309 174 TALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVL 220 (832)
Q Consensus 174 ~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~ 220 (832)
..|..+.....--+...+..|+.+|..||.++.+.+.+|.+.++.+.
T Consensus 204 ~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~~~~ 250 (251)
T 2fic_A 204 EELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLE 250 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999987765344558889999999999999999999988887653
No 190
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.24 E-value=6.1e-12 Score=113.24 Aligned_cols=86 Identities=24% Similarity=0.314 Sum_probs=74.2
Q ss_pred CCCcccccccccCccccccccccCCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Q 003309 705 ERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRG 784 (832)
Q Consensus 705 ~~~~~~l~~~~~~~~~~~~lll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g 784 (832)
+.+++++++..++... ...|+..+++++..|..|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 24 g~t~L~~A~~~g~~~~--v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~ 101 (110)
T 2zgd_A 24 LGKKLLEAARAGQDDE--VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101 (110)
T ss_dssp HHHHHHHHHHHTCHHH--HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred cchHHHHHHHcCCHHH--HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcC
Confidence 3456666666555443 34455678999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHH
Q 003309 785 KAMFAKLL 792 (832)
Q Consensus 785 ~~~~v~~L 792 (832)
+.+++++|
T Consensus 102 ~~~~~~~L 109 (110)
T 2zgd_A 102 NEDLAEIL 109 (110)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHh
Confidence 99999987
No 191
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=99.23 E-value=1e-09 Score=113.77 Aligned_cols=197 Identities=12% Similarity=0.114 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHH
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
.+...+.+++.++.++.+|.+.++.|+++.......+..|++++.++...... ....+..+.+. +......
T Consensus 38 ~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~~~~~~l~~~~~~l~~~~~~------~~~~~~~~~~~---~~~~~~~ 108 (244)
T 1uru_A 38 IFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWS------GYDALQAQTGA---SESLWAD 108 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTST------THHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC------CchHHHHHHHH---HHHHHHH
Confidence 45678889999999999999999999998877777778899999886542211 11233334333 4555567
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccc----CCchhHHhHHHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRK----GTKTDVAAILEEELHSARSAFEQARF 170 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k----~k~~~~~~e~~~~l~~~r~~f~~~sl 170 (832)
+...+...++.||..|+ .+++.++...++-+..+.+||.+..++.++.. .++..++..++.++..++..|....-
T Consensus 109 ~~~~~~~~vi~Pl~~~~-~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~ln~ 187 (244)
T 1uru_A 109 FAHKLGDQVLIPLNTYT-GQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNT 187 (244)
T ss_dssp HHHHHHTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788899999999999 57999999999999999999999998877653 34556677788899999999999998
Q ss_pred HHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003309 171 SLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLT 221 (832)
Q Consensus 171 d~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~ 221 (832)
.+...|..+...+.-.+...+..|+.+|..||.++.+.+..|.+.++.+..
T Consensus 188 ~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l~~ 238 (244)
T 1uru_A 188 ELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLAT 238 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888999998877665677788899999999999999998888887777654
No 192
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=99.18 E-value=5.9e-11 Score=121.74 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=65.7
Q ss_pred CcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 290 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 290 ~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
...|.++|||++++.+ ++.|+||||+|+++|+ ||+++...+..+. +
T Consensus 129 s~~P~~~G~L~~ke~~-~K~WkkRyfvLr~sgL-y~~~k~~sk~~r~----------------l---------------- 174 (256)
T 3hk0_A 129 SSSPEIQGFLHVKELG-KKSWKKLYVCLRRSGL-YCSTKGTSAAPRH----------------L---------------- 174 (256)
T ss_dssp TSCEEEEEEEEEECTT-SSCEEEEEEEEETTEE-EEESSTTCCCGGG----------------E----------------
T ss_pred CCCCcceeEEEEecCC-CCcceEEEEEEeCCEE-EEEecCCCCcccc----------------c----------------
Confidence 4567899999999544 5789999999997776 5555543221110 0
Q ss_pred cccccccccccccccccCC-----cccCCcceEEEecCCc------eEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTSTIKVDA-----DQSDLRFCFRIISPTK------NYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v~~~~-----~~~~r~~~F~I~t~~r------t~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
. .-+.+....|-... -....+|||.|.++.. .++|+|++++++..||.||+.|+.
T Consensus 175 ~----~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~ 240 (256)
T 3hk0_A 175 Q----LLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY 240 (256)
T ss_dssp E----EEECCTTEEEEEESSTHHHHCCSSSEEEEEEETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred e----EEEEcCCCEEEEecccccccCCCCCCEEEEEcccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 0 00122222221111 0112379999997643 599999999999999999999873
No 193
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.16 E-value=3.4e-11 Score=136.58 Aligned_cols=101 Identities=18% Similarity=0.370 Sum_probs=67.8
Q ss_pred ceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCC-CCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSK-SSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
.++|+|||.|+++ ..++||||||+|++++.|+||+..... +.|.+
T Consensus 5 ~v~keG~L~K~g~-~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~~i--------------------------------- 50 (446)
T 4ejn_A 5 AIVKEGWLHKRGE-YIKTWRPRYFLLKNDGTFIGYKERPQDVDQREA--------------------------------- 50 (446)
T ss_dssp CEEEEEEEEEEET-TTTEEEEEEEEEETTSBEEEESSCC-------C---------------------------------
T ss_pred eEEEEeeEEeecc-ccccccceEEEEeeCCEEEEEecCCCCCccCcc---------------------------------
Confidence 5789999999954 456899999999866777777765432 11211
Q ss_pred ccccccccccccccccCCcccCCcceEEEecCCc-eE---EEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK-NY---TLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~r-t~---~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
+...+.+..|.+.. ....+++||+|.+++. ++ +|++++++++++|+.||+.+|...
T Consensus 51 --~l~~~~~~~~~~~~--~~~~~~~~f~I~~~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~~~ 110 (446)
T 4ejn_A 51 --PLNNFSVAQCQLMK--TERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGL 110 (446)
T ss_dssp --CCGGGBCTTCEEEE--ECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHCCC-
T ss_pred --cccCccccceeecC--CCCCCCceeEEEcCCCceeeeeEEecCCHHHHHHHHHHHHhhhhhh
Confidence 11112223333322 2235679999998763 33 799999999999999999997533
No 194
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=99.14 E-value=8.1e-11 Score=122.06 Aligned_cols=101 Identities=19% Similarity=0.313 Sum_probs=62.5
Q ss_pred CcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 290 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 290 ~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
...|.++|||++++.+ .+.|+||||+|+++|+ ||+.+...+.... .
T Consensus 155 ~~~pe~~G~L~~k~~~-~k~WkkRyfvLr~sgL-yy~~K~~sk~~r~--------------------------------l 200 (281)
T 4gmv_A 155 VTVPEIEGVLWLKDDG-KKSWKKRYFLLRASGI-YYVPKGKAKVSRD--------------------------------L 200 (281)
T ss_dssp CCCCCCEEEEEEECTT-SSCEEEEEEEECSSCE-EEC---------C--------------------------------C
T ss_pred CCCCccEEEEEEECCC-CCCCeEEEEEEeCCEE-EEEeCCCCCcccc--------------------------------c
Confidence 3567789999999543 4689999999997776 4444432211100 0
Q ss_pred cccccccccccccccccCC-----cccCCcceEEEecCC------ceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTSTIKVDA-----DQSDLRFCFRIISPT------KNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v~~~~-----~~~~r~~~F~I~t~~------rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
. .-+.+..+.|-... -....+|||.|.++. ..++|+|++++++..||.||+-|+-
T Consensus 201 ~----~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~ 266 (281)
T 4gmv_A 201 V----CFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY 266 (281)
T ss_dssp E----EEECGGGCEEEEESSHHHHTCCSCSCEEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred e----EEEEcCCcEEEEecccccccCCCCCcEEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 0 00112222221100 112347999999764 4799999999999999999998873
No 195
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.03 E-value=6.7e-09 Score=117.13 Aligned_cols=100 Identities=15% Similarity=0.291 Sum_probs=64.1
Q ss_pred ceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
..+++|.|.+.++ +.++.|||+|-++.+++....... .-
T Consensus 243 ~li~~g~l~~~~~---~~~~~r~~fLF~d~Ll~~k~~~~~--------------------------------------~y 281 (434)
T 3mpx_A 243 EFLKEGTLMKVTG---KNRRPRHLFLMNDVLLYTYPQKDG--------------------------------------KY 281 (434)
T ss_dssp CEEECCEEEEEET---TEEEEEEEEEESSEEEEEEECTTS--------------------------------------CE
T ss_pred ceEecceEEEEeC---CCceEEEEEEECCEEEEEEecCCC--------------------------------------eE
Confidence 3578999988743 358899999997776665443211 01
Q ss_pred cccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 372 AARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
.....|.+....|.. .++.+.+|+|.|.++.++|+|+|.|++|++.||.+|+.+|......
T Consensus 282 ~~k~~i~L~~l~v~~-~~~~~~~~~f~i~~~~~~~~l~a~s~~ek~~W~~~i~~ai~e~~~~ 342 (434)
T 3mpx_A 282 RLKNTLAVANMKVSR-PVMEKVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYKA 342 (434)
T ss_dssp EEEEEEEC-----CC-CCCTTSCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHC-------
T ss_pred EEEEEEEcCCcEEEe-cCCCCCCeeEEEecCCeEEEEecCCHHHHHHHHHHHHHHHHHHHhh
Confidence 112334444444432 2333568999999999999999999999999999999999865543
No 196
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=98.99 E-value=1.4e-09 Score=100.31 Aligned_cols=94 Identities=20% Similarity=0.265 Sum_probs=68.0
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..++++|||.|+.+ . .|++|||+|.+.-++||.+....
T Consensus 50 e~Ilk~G~v~KrkG-l--~~kkR~liLT~~PrL~Yvdp~~~--------------------------------------- 87 (151)
T 1w1g_A 50 NLILKMGPVDKRKG-L--FARRRQLLLTEGPHLYYVDPVNK--------------------------------------- 87 (151)
T ss_dssp CCEEEEEEEEEEET-T--EEEEEEEEEETTTEEEEEETTTT---------------------------------------
T ss_pred CcEEEEEEEEeccc-C--cceeEEEEEcCCceEEEEcCccc---------------------------------------
Confidence 46799999999745 2 39999999996666666544322
Q ss_pred cccccccccccc-ccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 371 SAARHTVNLLTS-TIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 371 ~~~~~~i~l~~~-~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
...+.|.+..+ .|.... ..+|.|.||+|||+|.+. ..++++|+.||+.++...+..
T Consensus 88 -~~KGeIpls~~l~ve~k~-----~~~F~I~Tp~RtY~~~d~-~~~AqeWv~aI~~~~~~~~~~ 144 (151)
T 1w1g_A 88 -VLKGEIPWSQELRPEAKN-----FKTFFVHTPNRTYYLMDP-SGNAHKWCRKIQEVWRQRYQS 144 (151)
T ss_dssp -EEEEEECCCTTCEEEESS-----SSEEEEEETTEEEEEECT-TSCHHHHHHHHHHHHHHHHCC
T ss_pred -cccceEecCCCeeEEEcC-----CCEEEEECCCceEEEEcC-ccCHHHHHHHHHHHHHHHhcc
Confidence 11234555432 333221 237999999999999997 889999999999999877754
No 197
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=98.98 E-value=1.2e-09 Score=99.84 Aligned_cols=99 Identities=15% Similarity=0.240 Sum_probs=72.3
Q ss_pred cceeEEEEEEecCCC--CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCC
Q 003309 291 VQTIRQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD 368 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~--~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (832)
..|.-+|||.....+ ..|+||||||+++ |+.|+||+++++..
T Consensus 24 ~iPeL~dyLk~~~pkrltLKgfKryWfv~k-Dt~LsyYKSkEe~~----------------------------------- 67 (165)
T 4bbk_A 24 DIPKLADYLKLFRPKKLMLKACKQYWFVFK-DTSIAYFKNKELEQ----------------------------------- 67 (165)
T ss_dssp --CCEEEEEEEEC-------CCEEEEEEEE-TTEEEEESSGGGTT-----------------------------------
T ss_pred cChhhHhHHHhhcccccccccceeEEEEEe-CCEEEEEcCHHHhc-----------------------------------
Confidence 345678999654322 4579999999999 78899999986521
Q ss_pred ccccccccccccccccccCCcccCCcceEEEecC---C-ceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 369 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP---T-KNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 369 ~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~---~-rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
..+.+.|+|..|.|.++..-...+|+|.+..| + ..+.|.|+||.++..||.|++-|.
T Consensus 68 --geP~~~inLrGCEVtPDVnva~~Kf~ikL~ip~~~gm~e~~LrcdsE~QYa~WMAAcrLAs 128 (165)
T 4bbk_A 68 --GEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVADGMNEVYLRCDHEDQYARWMAACILAS 128 (165)
T ss_dssp --SCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --CCCceEEecCccEEecccccccceeeEEEecCCCCcceeeeeecCCHHHHHHHHHHhhhcc
Confidence 22346789999999865444456899998655 2 589999999999999999987663
No 198
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=98.97 E-value=1.6e-09 Score=100.34 Aligned_cols=98 Identities=13% Similarity=0.248 Sum_probs=74.0
Q ss_pred ceeEEEEEEecCC-C-CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 292 QTIRQGYLSKRSS-N-LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 292 ~~~k~G~L~K~~~-~-~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
.|.-++||..... + ..|+|||||||++ ++.|+||+++++..
T Consensus 46 iPeL~dyLk~~~pk~~tLKgyKryWFv~k-d~~LsyYKskEe~~------------------------------------ 88 (173)
T 4f7h_A 46 IPELADYIKVFKPKKLTLKGYKQYWCTFK-DTSISCYKSKEESS------------------------------------ 88 (173)
T ss_dssp TTCEEEEEEEECCBTTBCCCCEEEEEEEE-TTEEEEESCGGGCS------------------------------------
T ss_pred ChhhHhHHHhhcchhcccccceeEEEEEe-CCEEEEEcCHhHhc------------------------------------
Confidence 4557899965432 2 4589999999999 78899999876521
Q ss_pred cccccccccccccccccCCcccCCcceEEEecC----CceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTSTIKVDADQSDLRFCFRIISP----TKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~----~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
..+.+.|+|..|.|.++......+|++.+..| ...++|.|+|+.++..||.|.+-|.
T Consensus 89 -geP~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~~~gm~e~~Lrcd~E~qya~WMAAcrLAs 149 (173)
T 4f7h_A 89 -GTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLAS 149 (173)
T ss_dssp -SCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred -CCCceEEecCceEEeccccccccceeEEEeccCCCCcceeeeecCCHHHHHHHHHHhhhhc
Confidence 12346789999999865444456788887654 2689999999999999999987653
No 199
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.90 E-value=4.6e-09 Score=93.02 Aligned_cols=101 Identities=16% Similarity=0.271 Sum_probs=63.3
Q ss_pred CcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCC-CCCCCCCCCCccccCcCccCCCccccccccccCCCCCC
Q 003309 290 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQC-SKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD 368 (832)
Q Consensus 290 ~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (832)
...++|+||+.+. .+..+.|||||+.|+. .-+.||.+.. .++..
T Consensus 5 ~s~vlkeGW~VH~-t~~d~~rKRHYWrLD~-K~Itlf~~e~~~~~yk--------------------------------- 49 (125)
T 2coa_A 5 SSGTLREGWVVHY-SNKDTLRKRHYWRLDC-KCITLFQNNTTNRYYK--------------------------------- 49 (125)
T ss_dssp CCSCSEEEEEEEC-CSSSCCCEEEEEEECS-SEEEEESSSSCSSCSE---------------------------------
T ss_pred CCceeecceEEEE-ccCCccccceeeEecC-CeEEEEecCCCCceee---------------------------------
Confidence 3567899999998 4456789999999995 5555555532 21110
Q ss_pred ccccccccc-cccccccccCCcccCCcceEEEecCCceEEEEeC---C--------HHHHHHHHHHHHHHH
Q 003309 369 EKSAARHTV-NLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAE---S--------ALDQMDWIEKITGVI 427 (832)
Q Consensus 369 ~~~~~~~~i-~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~---s--------~~e~~~Wi~ai~~~i 427 (832)
..+..+| .+..|..........+.+||||+|.+.+|+.+++ . .+.+..|..||++|+
T Consensus 50 --eIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T~~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqAL 118 (125)
T 2coa_A 50 --EIPLSEILTVESAQNFSLVPPGTNPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL 118 (125)
T ss_dssp --EEETTTCCEEEESCCCSSSCTTSCCEEEEEECSSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred --eeehhHeecccccccccccCCCCCCceEEEEeCCeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhc
Confidence 1111111 1111211111112246799999999999999984 1 256999999998875
No 200
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=98.89 E-value=3.3e-07 Score=93.75 Aligned_cols=196 Identities=14% Similarity=0.179 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHH
Q 003309 15 QIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 15 ~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
..+..|.....++..+.++.|.++.|.+++.....++..|++++.++....-+ + ...+......+......
T Consensus 34 ~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~~~~l~~~y~~~~~-------~--~~~~~~~~~~~~~l~~~ 104 (237)
T 4avm_A 34 RFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWD-------G--HEELKAIVWNNDLLWED 104 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTST-------T--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccC-------c--HHHHHHHHHHHHHHHHH
Confidence 34567788888999999999999999999888888889999999988653211 1 12222333333334444
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcc--cCCchhHHhHHHHHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLR--KGTKTDVAAILEEELHSARSAFEQARFSL 172 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~--k~k~~~~~~e~~~~l~~~r~~f~~~sld~ 172 (832)
+...++..++.||..|+.. +++++..-++=+....+||.+..++.++. +.+++.++..++.++..++..|...--.+
T Consensus 105 ~~~~l~~~vi~Pl~~~~~~-~~~i~k~I~KR~~kllDyd~~~~~~~kl~~k~~kd~~kl~kae~el~~a~~~ye~lN~~L 183 (237)
T 4avm_A 105 YEEKLADQAVRTMEIYVAQ-FSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQEL 183 (237)
T ss_dssp HHHHHCCCCCHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556689999999976 88888888888888999999999987664 44566778888999999999999999999
Q ss_pred HHHHHhhhhhchhhHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003309 173 VTALSNVEAKKRFEFLEA-VSGTMDAHLRYFKQGYELLHQMEPYINQVLT 221 (832)
Q Consensus 173 ~~~l~~~~~~~~~e~l~~-l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~ 221 (832)
...|..+-... +.++.+ +..|+..|.+||......+..|.+.+..+..
T Consensus 184 ~~eLP~l~~~~-~~~~~~~~~~~i~~q~~f~~~~~~~~~~l~~~~~~~~~ 232 (237)
T 4avm_A 184 LEELPILYNSR-IGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKLER 232 (237)
T ss_dssp HHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99998876553 456665 6799999999999998888888877777764
No 201
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=98.84 E-value=1.3e-06 Score=89.43 Aligned_cols=195 Identities=13% Similarity=0.131 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHH
Q 003309 16 IQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVL 95 (832)
Q Consensus 16 i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l 95 (832)
.+..|.....+++.+.+|.|.++.|.+++.....++..|++++.++....... ......+.+...+ ....+
T Consensus 40 F~~~e~~F~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~ae~l~~ly~p~~~~------~~~~~~~~~~~~~---l~~d~ 110 (243)
T 4a3a_A 40 FEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWYG------REDVKMVGEKCDV---LWEDF 110 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSTT------HHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccC------ccchHHHHHHHHH---HHHHH
Confidence 45566777778888999999999999998888888889999999986532111 0112222232222 22333
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcc--cCCchhHHhHHHHHHHHHHHHHHHHHHHHH
Q 003309 96 RSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLR--KGTKTDVAAILEEELHSARSAFEQARFSLV 173 (832)
Q Consensus 96 ~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~--k~k~~~~~~e~~~~l~~~r~~f~~~sld~~ 173 (832)
...+....+.||..|+.- +++++..=++=+....|||.+..++.++. +.+++.++..++.++..++..|...--.+.
T Consensus 111 ~~~l~d~~l~Pl~~l~~~-f~~i~k~I~KR~~KllDYD~~~~k~~kL~~K~~kd~~kl~kae~el~~Ak~~Ye~lN~~L~ 189 (243)
T 4a3a_A 111 HQKLVDGSLLTLDTYLGQ-FPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQ 189 (243)
T ss_dssp HHHHHHTHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-ChHHHHHHHHhcchHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445678999999876 78887777777777889999999986664 445777788899999999999999999999
Q ss_pred HHHHhhhhhchhhHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003309 174 TALSNVEAKKRFEFLE-AVSGTMDAHLRYFKQGYELLHQMEPYINQVLT 221 (832)
Q Consensus 174 ~~l~~~~~~~~~e~l~-~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~ 221 (832)
..|..+-... +.++. .+.+|+..|..||........+|.+-++.+..
T Consensus 190 eELP~l~~~r-~~~~~~~~~s~i~~Q~~f~~e~~k~~~~l~~~~~~~~~ 237 (243)
T 4a3a_A 190 EELPSLWSRR-VGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGD 237 (243)
T ss_dssp HHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 9998876543 45555 47799999999999999998888877766653
No 202
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=4.4e-08 Score=86.98 Aligned_cols=103 Identities=17% Similarity=0.276 Sum_probs=63.9
Q ss_pred CcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCc
Q 003309 290 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 369 (832)
Q Consensus 290 ~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (832)
...++|+||+.+.+. ..+.|||+|+.|+...+-+|......+...
T Consensus 5 ~s~vlkeGWmVH~t~-~d~~rKRHYWrLD~K~Itlf~~e~~~k~yk---------------------------------- 49 (129)
T 2d9z_A 5 SSGMVKEGWMVHYTS-RDNLRKRHYWRLDSKCLTLFQNESGSKYYK---------------------------------- 49 (129)
T ss_dssp CTTSEEEEEEEEEES-SCCCCEEEEEEEESSCEEEESCSSCCSCCC----------------------------------
T ss_pred CCceeecceEEEEcc-CCccccceeeEecCCeEEEEecCCCCceec----------------------------------
Confidence 356789999998854 456899999999955544443332222111
Q ss_pred cccccccc-cccccccccCCcccCCcceEEEecCCceEEEEeCC---------------HHHHHHHHHHHHHHHH
Q 003309 370 KSAARHTV-NLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAES---------------ALDQMDWIEKITGVIA 428 (832)
Q Consensus 370 ~~~~~~~i-~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s---------------~~e~~~Wi~ai~~~i~ 428 (832)
..+..+| .+..+...........++||||+|.+.+|+.+++. .+.+..|..||++|+.
T Consensus 50 -eIpLseIL~v~~~~~~~~~~~~~~phcFEi~T~~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm 123 (129)
T 2d9z_A 50 -EIPLSEILRISSPRDFTNISQGSNPHCFEIITDTMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM 123 (129)
T ss_dssp -EECTTTCCEECCTTCCCCSSSCSCCCSEEEECSSCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred -eeeHHHhcccccccCccccCCCCCCceEEEEECCEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence 1111111 11111111000122356999999999999999853 6899999999998874
No 203
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=98.77 E-value=1.3e-06 Score=86.57 Aligned_cols=187 Identities=17% Similarity=0.133 Sum_probs=151.1
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHH
Q 003309 18 GLEESAEVLR---ERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 18 ~~E~~i~~l~---~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
++|.+|+.|+ ..+..|++.++.|....-.....+.+|.+.|...+.-. +. .+..+..||++++-+......
T Consensus 8 EL~~klE~l~~~q~~Y~~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~~-----p~-l~~~f~~~~~~~r~~~k~g~~ 81 (224)
T 1i4d_A 8 ELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKS-----PE-LQEEFGYNAETQKLLCKNGET 81 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----GG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----cH-HHHHHHHHHHHHHHHHHhHHH
Confidence 4555665555 46889999999999988888888899999999887642 11 356799999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccC---C-chhHHhHHHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKG---T-KTDVAAILEEELHSARSAFEQARF 170 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~---k-~~~~~~e~~~~l~~~r~~f~~~sl 170 (832)
|+. .-..|+.-|..|+..-|..-...-++|+.++-+||+++.....++-. . ....++.+...+..+|..|.+...
T Consensus 82 Ll~-~L~~f~s~l~T~~~kaI~DT~lTIk~ye~aR~EY~ay~~~~ee~~~~~~~~~~l~rve~~q~~~~~ak~kf~kLR~ 160 (224)
T 1i4d_A 82 LLG-AVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRG 160 (224)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHhHhccHHHHHHHHHHHHhHhHHHHHhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 884 45677888999999999999999999999999999999876655422 1 122445677899999999999999
Q ss_pred HHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 171 SLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQ 211 (832)
Q Consensus 171 d~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 211 (832)
|.+.+|..+..++--.+-.+|..|..+...||....+.++.
T Consensus 161 DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l~~ 201 (224)
T 1i4d_A 161 DVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQ 201 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999988777678889999999999999988888754
No 204
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=98.61 E-value=5.4e-06 Score=92.30 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=65.1
Q ss_pred ceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
+.+++|.|.+.... ++.++.||++|-++-+++...+... -
T Consensus 233 rli~~G~l~~~~~~-~~~~~~~~~fLF~d~Ll~~k~k~~~---------------------------------------y 272 (406)
T 2vrw_B 233 RPKIDGELKITSVE-RRSKTDRYAFLLDKALLICKRRGDS---------------------------------------Y 272 (406)
T ss_dssp SEEEEEEEEEECSS-CCSCEEEEEEEESSEEEEEEEETTE---------------------------------------E
T ss_pred cccccccEEEEecC-CCccceEEEEecCCEEEEEEecCCc---------------------------------------e
Confidence 36889999887432 3468999999997777665443100 0
Q ss_pred cccccccccccccccCCcc----cCCcceEEEec--CCceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIKVDADQ----SDLRFCFRIIS--PTKNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~~----~~r~~~F~I~t--~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
.....|.+....|...++. ..-+++|.|++ +.++|+|+|.|++|++.|+++|+.+|..+.
T Consensus 273 ~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~ 338 (406)
T 2vrw_B 273 DLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIY 338 (406)
T ss_dssp EEEEEEETTTEEEEC--------CTTCEEEEEEETTCSCEEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEecccceeeeecCCCCccCCccceeeEEEecCCCceEEEeCCCHHHHHHHHHHHHHHHhhhh
Confidence 0112233333333221111 12358899987 467999999999999999999999998764
No 205
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=98.40 E-value=1.5e-05 Score=93.04 Aligned_cols=100 Identities=19% Similarity=0.271 Sum_probs=66.0
Q ss_pred ceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
+.+++|.|.+... ..+.++.|||+|-++-+++..++. . .-
T Consensus 405 rll~~G~l~~~~~-~~~~~~~r~~fLF~d~Ll~~k~~~-~--------------------------------------~y 444 (587)
T 3ky9_A 405 RPKIDGELKITSV-ERRSKMDRYAFLLDKALLICKRRG-D--------------------------------------SY 444 (587)
T ss_dssp CEEEEEEEEEECS-SCCSCEEEEEEEETTEEEEEEEET-T--------------------------------------EE
T ss_pred ceEEEeeEEEEec-cCCCcceEEEEEECCEEEEEEecC-C--------------------------------------EE
Confidence 3688999988743 345689999999977777665441 1 00
Q ss_pred cccccccccccccccCCc----ccCCcceEEEecCC--ceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIKVDAD----QSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~----~~~r~~~F~I~t~~--rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
.....|.+....|....+ ...-+++|.|++.. ++|+|+|.|++|++.|+.+|+.+|....
T Consensus 445 ~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~~~ 510 (587)
T 3ky9_A 445 DLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIY 510 (587)
T ss_dssp EEEEEEEGGGEEEEEC-----CCCTTCEEEEEEETTC---CEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred EeeeeechhhceeeecCCCCcccccccceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence 112234444444432211 11235789999876 7999999999999999999999997653
No 206
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=98.35 E-value=6e-05 Score=77.02 Aligned_cols=196 Identities=18% Similarity=0.182 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC-CCCCCccccCchHHHHHHHHHHHHHHHHHHH
Q 003309 17 QGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG-HNDPISVAFGGPVMTKFTIALREIGTYKEVL 95 (832)
Q Consensus 17 ~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~-~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l 95 (832)
..|-.-++.+.=.+++++..+++|..++..+..+...|.++|...+.. ..... ...+|.+|.++...++.+++.+..+
T Consensus 18 ~~~~~im~~~~P~~e~li~~~~kY~~al~~~~~a~~~f~dal~kia~~A~~s~g-s~elG~~L~~i~~~~r~ie~~l~~~ 96 (253)
T 2ykt_A 18 NVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQG-SKELGDVLFQMAEVHRQIQNQLEEM 96 (253)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333555666788999999999999888888889999999888641 11111 1346778899999999999988888
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhH----HHHHHHHHHHhcccCC----ch----hHHhHHHHHHHHHHH
Q 003309 96 RSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASL----LYDQAREKFLSLRKGT----KT----DVAAILEEELHSARS 163 (832)
Q Consensus 96 ~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~----~yd~al~k~~~~~k~k----~~----~~~~e~~~~l~~~r~ 163 (832)
...+...++.||++=++.|.+.+....|+|.+... .++.+......++|+. .+ +...+.-+.+...++
T Consensus 97 ~~~~~~~li~pL~~kie~d~K~v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~KK~k~gk~~~~~~~~~~~~~e~v~~~~~ 176 (253)
T 2ykt_A 97 LKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQG 176 (253)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999888777766544 4544443333343332 11 333433344444444
Q ss_pred HHHHHHHHHHHHHHhhhhhchh-hHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003309 164 AFEQARFSLVTALSNVEAKKRF-EFLEAVSGTMDAHLRYFKQGYELLHQMEP 214 (832)
Q Consensus 164 ~f~~~sld~~~~l~~~~~~~~~-e~l~~l~~~~~a~~~ff~~g~~~~~~l~~ 214 (832)
.+++.--+-+... .+++|.+| -||+.++.++.....|+.++.+++...-|
T Consensus 177 ~le~~~~~~lr~a-L~EERrRycflv~~~~~v~~~~~~~h~~~~~~L~~~l~ 227 (253)
T 2ykt_A 177 ELENYVSDGYKTA-LTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLP 227 (253)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5444433333332 23343333 56777888888888888887777654333
No 207
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=98.33 E-value=3.6e-06 Score=75.29 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=67.8
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcccc
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 372 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (832)
.+++|.|.+-.....+.=+++||+|-+|.++|-....... |. + .
T Consensus 8 lv~eG~l~el~~~~~k~~~~v~~FLfND~Ll~a~~~~~~~--~~-----------------~-----------------~ 51 (113)
T 1zc3_B 8 LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRR--GM-----------------Y-----------------R 51 (113)
T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTT--SC-----------------E-----------------E
T ss_pred EEEeCcEEEEccccCCCCccEEEEecCCEEEEEEEeccCc--cc-----------------E-----------------E
Confidence 5688999877443222234679999988888876643210 00 0 0
Q ss_pred ccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHHHc
Q 003309 373 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS 432 (832)
Q Consensus 373 ~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 432 (832)
....+.+....|.-.++...-+++|.|.++.++++|+|+|++|..+||.+|+.||...+.
T Consensus 52 ~~~~~~L~~~~v~d~~d~~~~~n~f~i~~~~~s~~~~aes~~eK~~Wl~~~~~a~~~~~~ 111 (113)
T 1zc3_B 52 YNALYPLDRLAVVNVKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSD 111 (113)
T ss_dssp EEEEEETTTCEEEEECCBTTBSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcccCEEEECCCCcccceEEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHHHHhh
Confidence 001122322222211233345799999999999999999999999999999999976653
No 208
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=98.10 E-value=0.00056 Score=67.32 Aligned_cols=197 Identities=11% Similarity=0.183 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC-CCCCCccccCchHHHHHHHHHHHHHH
Q 003309 12 FRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG-HNDPISVAFGGPVMTKFTIALREIGT 90 (832)
Q Consensus 12 FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~-~~~~~~~~~~~~~l~~f~~~l~ei~~ 90 (832)
.|.+...|-.-++.+.=.++.++...+.|..++.....+...|.++|..++.. ..... ...+|.+|.+.++..++|.+
T Consensus 11 ~~~t~~~y~nimeqfnP~l~nlv~lg~~Y~kAl~a~~~A~~~y~dA~~Kige~A~~S~~-skeLG~vL~qis~~hR~i~~ 89 (222)
T 3ok8_A 11 YRSTMAIYKSIMEQFNPALENLVYLGNNYLRAFHALSEAAEVYFSAIQKIGEQALQSST-SQILGEILVQMSDTQRHLNS 89 (222)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHHHH
Confidence 36667777777888888999999999999998888888889999999888641 11111 23467889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHH----HHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHH
Q 003309 91 YKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLL----YDQAREKFLSLRKGTKTDVAAILEEELHSARSAFE 166 (832)
Q Consensus 91 ~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~----yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~ 166 (832)
-.+.+...+...++.||++=++.|.+-+...+|+|...-.. |+.+......++++.. .......+.+..-+..+.
T Consensus 90 ~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~~e~k~~~~~leK~~~elkK~~rksq-k~~~k~~e~v~~~q~el~ 168 (222)
T 3ok8_A 90 DLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRD-KNAREMKESVNRLHAQMQ 168 (222)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhc-cChHHHHHHHHHHHhHHH
Confidence 98888888999999999999999999999999988876443 4443333333332222 111222222322222222
Q ss_pred HHHHHHHHHHHhhhhhchhhH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 167 QARFSLVTALSNVEAKKRFEF-LEAVSGTMDAHLRYFKQGYELLHQ 211 (832)
Q Consensus 167 ~~sld~~~~l~~~~~~~~~e~-l~~l~~~~~a~~~ff~~g~~~~~~ 211 (832)
..--+- .+=..+++++++-| ++.-+.+.+....|+.++.+++.+
T Consensus 169 ~f~~~s-~r~Al~EErRRYcFL~ekhc~~~~~~~~~h~k~~~~L~~ 213 (222)
T 3ok8_A 169 AFVSES-KRAAELEEKRRYRFLAEKHLLLSNTFLQFLGRARGMLQN 213 (222)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 221111 22234556666555 678899999999999999998754
No 209
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=98.01 E-value=0.00068 Score=76.68 Aligned_cols=105 Identities=11% Similarity=0.194 Sum_probs=68.5
Q ss_pred ceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
..+++|.|.+.... .+.++.|||+|-++-+++..++.... ...
T Consensus 333 ~li~~G~l~~~~~~-~~~~~~r~~fLF~d~Ll~~k~~~~~~------------------------------------~~~ 375 (466)
T 2pz1_A 333 ELIYSGELTRVTQP-QAKSQQRMFFLFDHQLIYCKKDLLRR------------------------------------DVL 375 (466)
T ss_dssp CEEEEEEEEEECTT-TCCEEEEEEEEETTEEEEEEECSSCT------------------------------------TCE
T ss_pred eeEEeeeEEEEecC-CCCeeEEEEEEECCEEEEEEeccccC------------------------------------Cce
Confidence 56899999887542 23578999999977777665432110 000
Q ss_pred cccccccccccccccCCccc------CCcceEEEecC--CceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 372 AARHTVNLLTSTIKVDADQS------DLRFCFRIISP--TKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~~~------~r~~~F~I~t~--~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
.....|.+....|....+.. .-+++|.|..+ .++|+|+|.|++|+..||++|+.++..+-..
T Consensus 376 ~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~~~~ 445 (466)
T 2pz1_A 376 YYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLD 445 (466)
T ss_dssp EEEEEEETTTCEEEECCSBSCCSSCCCBCEEEEEECSSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEeeeeeccceEEEeCCCCcccccccccceeEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhh
Confidence 11123444333333211111 22588999976 4799999999999999999999999876554
No 210
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=97.98 E-value=0.0005 Score=74.78 Aligned_cols=104 Identities=15% Similarity=0.231 Sum_probs=67.9
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
...+++|.|.+.+ .++.|||+|-++-+++..++... +... | . ....
T Consensus 245 r~li~eG~l~~~g-----~~~~~~~fLF~d~Ll~~k~~~~~-~~~~-------------~--------------~-~~~~ 290 (354)
T 1dbh_A 245 NEFIMEGTLTRVG-----AKHERHIFLFDGLMICCKSNHGQ-PRLP-------------G--------------A-SNAE 290 (354)
T ss_dssp CCEEEEEEEEETT-----CSSCEEEEEESSEEEEEEECTTC-CCCT-------------T--------------S-CCCS
T ss_pred ceEEEEeeEEEEe-----cCceEEEEEeCCEEEEEecCCCC-CCCC-------------C--------------C-CCcc
Confidence 3468999999882 47899999997766666544211 0000 0 0 0011
Q ss_pred ccccccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
-.....|.+..+.|....+...-+++|+|.+++ ++|+|+|.|+++++.|+.+|+.+..
T Consensus 291 y~~k~~i~l~~~~v~~~~d~~~~~~~F~i~~~~~~~~~l~a~s~~ek~~W~~~i~~~~~ 349 (354)
T 1dbh_A 291 YRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQY 349 (354)
T ss_dssp EEEEEEEESCSCEEEECCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred eeEEEEEeccceEEEeCCcccccCccEEEecCCCCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 112244555555554333333457899999885 8999999999999999999998864
No 211
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=97.97 E-value=0.0004 Score=77.41 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=66.1
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
...+++|.|.++.++ +.|+.|||+|-++-+++..++.......... ....+. .+.+
T Consensus 293 r~li~eG~l~~~~~~--~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~---------------------~~~~~~-~~~~ 348 (418)
T 3t06_A 293 RKMIHEGPLTWRISK--DKTLDLHVLLLEDLLVLLQKQDEKLLLKCHS---------------------KTAVGS-SDSK 348 (418)
T ss_dssp SCEEEEEEEEECCBT--TBCCEEEEEEESSEEEEEEECSSCEECCC----------------------------------
T ss_pred ceeEEeceEEEEeCC--CCeEEEEEEecCCEEEEEEEcCCceEEeecc---------------------cccccC-CCcc
Confidence 456899999877433 3588999999977777766543211000000 000000 0111
Q ss_pred ccccccccccccccccCCcccCCcceEEEecC-----CceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISP-----TKNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~-----~rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
......|.+....|+. .. +-...|.|++. .++|+|+|.|.+|++.||.+|+.+|+.+
T Consensus 349 ~~~k~~i~l~~~~v~~-~~--~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~ 410 (418)
T 3t06_A 349 QTFSPVLKLNAVLIRS-VA--TDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNA 410 (418)
T ss_dssp -CCCSEEEGGGEEEEE-CS--SCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred cccCCceechhceecc-cc--ccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 1112334444444442 11 12356888763 3799999999999999999999999754
No 212
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.92 E-value=8.6e-05 Score=66.05 Aligned_cols=104 Identities=15% Similarity=0.273 Sum_probs=67.7
Q ss_pred CcceeEEEEEE-ecCCC------CCCCCceeEEEEeCC-----ceEEEEecCCCCCCCCCCCCccccCcCccCCCccccc
Q 003309 290 KVQTIRQGYLS-KRSSN------LRGDWKRRFFVLDSR-----GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRW 357 (832)
Q Consensus 290 ~~~~~k~G~L~-K~~~~------~~~~WkrRwfvL~~~-----~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (832)
....+|+|.|. ..+.. ....|.|+|++|..- .+|-||..++...+... |.
T Consensus 15 ~~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~~---------------i~--- 76 (136)
T 1v5m_A 15 LVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVS---------------IP--- 76 (136)
T ss_dssp SCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSC---------------EE---
T ss_pred cceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCCccc---------------cc---
Confidence 35678999883 33211 335799999999864 46778866654222110 00
Q ss_pred cccccCCCCCCccccccccccccccccccCCcccCCcceEEEecCCc-eEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 358 LSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK-NYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~r-t~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
...-+.+..++.. +-.|+.+.|-|.+.++ .|+|.|.++.+|++|+..|+.++..
T Consensus 77 ---------------cs~I~EVR~tt~L---EmPD~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~~~ 131 (136)
T 1v5m_A 77 ---------------LSAIIEVRTTMPL---EMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDS 131 (136)
T ss_dssp ---------------TTTCCBCCCCCCS---SSCCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ---------------hhhhhhhhhcccc---ccCCccceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhcCC
Confidence 0000223333332 2345679999998876 7999999999999999999988754
No 213
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=97.91 E-value=0.00067 Score=75.15 Aligned_cols=106 Identities=10% Similarity=0.131 Sum_probs=68.8
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
...+++|.|.+.+.. .+.++.|||+|-++-+++..++... + ..
T Consensus 255 r~Li~~G~l~~~~~~-~~k~~~r~~fLF~d~Ll~~k~~~~~---~---------------------------------~~ 297 (402)
T 2dfk_A 255 SELIYTGEMAWIYQP-YGRNQQRVFFLFDHQMVLCKKDLIR---R---------------------------------DI 297 (402)
T ss_dssp CCEEEEEEEEEESST-TCCCEEEEEEEETTEEEEEEECSSC---T---------------------------------TC
T ss_pred cceEEeceEEEEecc-CCceEEEEEEeeCCEEEEEEecccc---C---------------------------------Cc
Confidence 356899999887542 2357899999997777776543211 0 00
Q ss_pred ccccccccccccccccCCccc------CCcceEEEecC--CceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 371 SAARHTVNLLTSTIKVDADQS------DLRFCFRIISP--TKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~------~r~~~F~I~t~--~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
-.....|.+....|....+.. .-+++|.|.++ .++|+|+|.|++|+..||++|+.++..+...
T Consensus 298 ~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~~~~ 368 (402)
T 2dfk_A 298 LYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQED 368 (402)
T ss_dssp EEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeeeeeccceEEEecCCCCccccccccceeEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhh
Confidence 011123444333333212211 12478999876 4799999999999999999999999877654
No 214
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=97.88 E-value=0.0016 Score=65.96 Aligned_cols=128 Identities=14% Similarity=0.016 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC-CCCCCccccCchHHHHHHHHHH
Q 003309 11 MFRKQIQGLEESAEVLRE---RSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG-HNDPISVAFGGPVMTKFTIALR 86 (832)
Q Consensus 11 ~FRa~i~~~E~~i~~l~~---~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~-~~~~~~~~~~~~~l~~f~~~l~ 86 (832)
.|++....|..-+++++. .++.+++.+++|...+..+..+...|.++|...+.. .+.......+|.+|.++....+
T Consensus 11 ~~~~~~~~~~~ii~~mk~~~P~~e~lv~~g~ky~~al~~~~~a~~af~Da~qKvad~A~~s~g~s~elG~~L~~i~~~hr 90 (253)
T 2d1l_A 11 ECSALGGLFQTIISDMKGSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTRGGTREIGSALTRMCMRHR 90 (253)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHHHHH
Confidence 467777788777775544 689999999999999888888889999999988641 1111112345778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 003309 87 EIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREK 138 (832)
Q Consensus 87 ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k 138 (832)
.|+..+..+...+...++.||++=++.|.+.+....|.|.+.-.+|-+-+.|
T Consensus 91 ~ie~~l~~~~k~~~~eli~pLe~k~e~d~k~~~~~~K~~~~~~k~~r~elkk 142 (253)
T 2d1l_A 91 SIEAKLRQFSSALIDCLINPLQEQMEEWKKVANQLDKDHAKEYKKARQEIKK 142 (253)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999998888777776666555433
No 215
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=97.85 E-value=0.011 Score=67.91 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=63.5
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccC-CCCCCc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYH-GGVHDE 369 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 369 (832)
...+++|.|.++... +.|+.|||+|-++-+++..++...-... ..... ....+.
T Consensus 410 R~LI~eG~l~~~~~~--~k~~~r~~fLF~D~LL~~k~k~~ky~~k-----------------------~~~~~~~~~~d~ 464 (536)
T 3odw_A 410 KKLVHEGPLTWRVTK--DKAVEVHVLLLDDLLLLLQRQDERLLLK-----------------------SHSRTLTPTPDG 464 (536)
T ss_dssp SCEEEEEEEEEESCC-----CEEEEEEESSEEEEEEEETTEEECC-----------------------CC----------
T ss_pred ceeeeecceEEEecC--CCeeEEEEEEcCCEEEEEEEcCCeEEEe-----------------------eccccccccccc
Confidence 357899999877543 3589999999977777766543210000 00000 000011
Q ss_pred cccccccccccccccccCCcccCCcceEEEec----CCceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 370 KSAARHTVNLLTSTIKVDADQSDLRFCFRIIS----PTKNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 370 ~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t----~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
+......|.+....|+... .+ ..+|.|++ +..+|.|+|.|.+|++.||..|+.||..+.
T Consensus 465 k~~~~~~i~L~~l~v~e~~--~d-~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~ 527 (536)
T 3odw_A 465 KTMLRPVLRLTSAMTREVA--TD-HKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLK 527 (536)
T ss_dssp --CCCSEEEGGGEEEEECT--TC-TTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTSC
T ss_pred ccccCceeecccceeeccc--cc-CCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCC
Confidence 1111122444444444221 12 33455554 347899999999999999999999998654
No 216
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.84 E-value=0.00011 Score=66.99 Aligned_cols=55 Identities=13% Similarity=0.267 Sum_probs=43.1
Q ss_pred ccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 375 HTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 375 ~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
+++.+..-.|....+..+.++||+|..+. +++.+.|.|.+|++.||.+|+.+|..
T Consensus 72 gklPL~g~~V~~~ed~~~~~~aFeI~g~~~~~i~v~~~s~eE~~~Wl~~L~~~i~~ 127 (132)
T 1v61_A 72 GKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKS 127 (132)
T ss_dssp EEECTTTCBCSTTCSSSSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHHTT
T ss_pred EEEecceeEEEeccccccCccEEEEecCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 44555555554333334678999999987 89999999999999999999999853
No 217
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=97.79 E-value=0.0027 Score=69.34 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=65.2
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
...+++|.|.++.+ ++.++.|||+|-++-+++..++...-.... ... +. .|. .+..
T Consensus 251 R~li~~G~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~------~~~------~~---------~~~-~~~~ 306 (368)
T 1xcg_A 251 RKMIHEGPLTWRIS--KDKTLDLHVLLLEDLLVLLQKQDEKLLLKC------HSK------TA---------VGS-SDSK 306 (368)
T ss_dssp SCEEEEEEEEECCS--SSCCCEEEEEEESSEEEEEEECSSCEECCC----------------------------------
T ss_pred ceEEeecceEeeec--CCCeeEEEEEcccccHHHhhcccccceeee------ccc------cc---------cCC-CCcc
Confidence 35689999987633 245899999999777776654422100000 000 00 000 0111
Q ss_pred ccccccccccccccccCCcccCCcceEEEecC-----CceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISP-----TKNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~-----~rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
......|.+....|...+ +-+.+|.|++. .++|+|+|.|+++++.|+.+|+.||.++
T Consensus 307 ~~~~~~i~l~~~~v~~~~---~~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~a 368 (368)
T 1xcg_A 307 QTFSPVLKLNAVLIRSVA---TDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNA 368 (368)
T ss_dssp -CCCSEEEGGGEEEEECS---SCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred cCcCCceEccceeeeccc---CCCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 111233444444443211 12467888764 4799999999999999999999999753
No 218
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=97.73 E-value=0.028 Score=61.39 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=63.3
Q ss_pred ceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccC-CCCCCcc
Q 003309 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYH-GGVHDEK 370 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 370 (832)
..+++|.|.++.+. +.|+.|||+|-++-+++..++...-... ..... ....+.+
T Consensus 258 ~li~eG~l~~~~~~--~~~~~~~~fLF~d~Ll~~k~k~~k~~~k-----------------------~~~~~~~~~~~~k 312 (377)
T 3p6a_A 258 KLVHEGPLTWRVTK--DKAVEVHVLLLDDLLLLLQRQDERLLLK-----------------------SHSRTLTPTPDGK 312 (377)
T ss_dssp CEEEEEEEEEESSS--SCEEEEEEEEESSEEEEEEEETTEEECC-----------------------CCCCC--------
T ss_pred eEEEECCcEEEecC--CCeEEEEEEeeCCEEEEEEEcCceeEEe-----------------------ecccccccCcccc
Confidence 56899999776443 3689999999977777766543210000 00000 0000111
Q ss_pred ccccccccccccccccCCcccCCcceEEEec---CCceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIIS---PTKNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t---~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
......|.+....++. ...+.+..|.|.+ +...|.|+|.|.+|++.||..|+.||..+
T Consensus 313 ~~~~~~i~l~~~~v~e--~~~~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~~ 373 (377)
T 3p6a_A 313 TMLRPVLRLTSAMTRE--VATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSL 373 (377)
T ss_dssp -CSCSEEEGGGEEEEE--CTTCTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCeEechhhhccc--cccccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 1111123343334432 1223344455544 34789999999999999999999999743
No 219
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=97.73 E-value=0.00019 Score=65.57 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=35.8
Q ss_pred cCCcceEEEecCC------ceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 391 SDLRFCFRIISPT------KNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 391 ~~r~~~F~I~t~~------rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
..-+|+|.|.++. ++++|+|.|+.||..||++|+.+|+.+-
T Consensus 79 e~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e~~ 125 (140)
T 3qwm_A 79 QYYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIAEVQ 125 (140)
T ss_dssp SSCTTEEEEEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 3468999999753 6799999999999999999999998764
No 220
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=97.69 E-value=0.0011 Score=72.49 Aligned_cols=155 Identities=12% Similarity=0.175 Sum_probs=103.7
Q ss_pred HHHHHHHHHhhCCCC-CC-CccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHh
Q 003309 52 IAFASALETFGGGHN-DP-ISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKAS 129 (832)
Q Consensus 52 ~~f~~~l~~f~~~~~-~~-~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~ 129 (832)
..+..++..|+.... +. .....+..+|.++|+.+..+......--.+....+.++|..|+.- +..+++.=..-..+-
T Consensus 227 ~~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~l-l~s~Kdll~~R~~aL 305 (386)
T 4akv_A 227 QKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGL-LSNFPDIIHLQKGAF 305 (386)
T ss_dssp HHHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 456777777764211 00 111224567888888888888777666656667788888887654 444444322222333
Q ss_pred HHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 130 LLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELL 209 (832)
Q Consensus 130 ~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~ 209 (832)
.+|..+ .|.... .| ++ ..++.++++.|...+-.....|..++.++-.+|-..|..|+..|..|+++..+.+
T Consensus 306 ~k~~ea-~kl~~~--~K-~~-----~~~~~e~~~r~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~~~~l 376 (386)
T 4akv_A 306 AKVKES-QRMSDE--GR-MV-----QDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQL 376 (386)
T ss_dssp HHHHHH-HHHHHT--TS-SC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHh--CC-cc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 232222 21 12 1355678899999999999999999999888999999999999999999999988
Q ss_pred hhhHHHH
Q 003309 210 HQMEPYI 216 (832)
Q Consensus 210 ~~l~~~~ 216 (832)
+.+-+.+
T Consensus 377 e~~l~~f 383 (386)
T 4akv_A 377 EKTLRMY 383 (386)
T ss_dssp HHHHGGG
T ss_pred HHHHHhh
Confidence 7765544
No 221
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=97.54 E-value=0.019 Score=60.68 Aligned_cols=173 Identities=10% Similarity=0.098 Sum_probs=104.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCC-----c--cccCchHHH
Q 003309 7 DDSPMFRKQIQGLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPI-----S--VAFGGPVMT 79 (832)
Q Consensus 7 ~DSP~FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~-----~--~~~~~~~l~ 79 (832)
.+++.|...+-. .++.|..+++.=++.|+.+.+-+.+-...+..|+..|..+.....+.. . ..-...++.
T Consensus 3 ~~~~~f~~~fw~---g~~~l~~r~~~g~~~~~el~~f~~eRa~iE~eYak~L~kLa~~~~~~~~~~~~~~~~~t~~~aw~ 79 (305)
T 2efl_A 3 LGSMSWGTELWD---QFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFI 79 (305)
T ss_dssp ---CCHHHHTTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-------CTTSHHHHHHH
T ss_pred CCCCChhhHHhH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCccccccccHHHHHH
Confidence 356677766653 677888888888888888777766666667889999987754211111 0 001123455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---------------------HHHHHHHHHHHHHhHHHHHHHHH
Q 003309 80 KFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDL---------------------HEVKEARKCFDKASLLYDQAREK 138 (832)
Q Consensus 80 ~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di---------------------~~~ke~rk~fek~~~~yd~al~k 138 (832)
.+-..+..+...|..+...+...++.||..|.++-- ..+..+|+.|+....+++.+..+
T Consensus 80 ~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~ 159 (305)
T 2efl_A 80 SNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQY 159 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777888888888999999998865522 12334667777777777777776
Q ss_pred HHhcccCC--chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003309 139 FLSLRKGT--KTDVAAILEEELHSARSAFEQARFSLVTALSNVEAK 182 (832)
Q Consensus 139 ~~~~~k~k--~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~ 182 (832)
+..+.+.. ....+.-+...+..++.....+--+|...+..++..
T Consensus 160 ~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~ 205 (305)
T 2efl_A 160 FEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHE 205 (305)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65443321 112222233344445555556666777766666554
No 222
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=97.53 E-value=0.003 Score=69.39 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=66.9
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
...+++|.|.++..+ +.++.|||+|-++-+++..++...-..... .. . + ....+..
T Consensus 255 R~li~eG~l~~~~~~--~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~--------~~-----~----~-----~~~~~~~ 310 (385)
T 1txd_A 255 RKMIHEGPLVWKVNR--DKTIDLYTLLLEDILVLLQKQDDRLVLRCH--------SK-----I----L-----ASTADSK 310 (385)
T ss_dssp SCEEEEEEEEEESSS--SCBCCEEEEEESSEEEEEEEETTEEECCC----------------------------------
T ss_pred ceEEEECcEEEEcCC--CCeEEEEEEecCCeeEEEEecCCeeEEeec--------cc-----c----c-----cccCCCC
Confidence 356899999876432 458899999997777776544211000000 00 0 0 0000111
Q ss_pred ccccccccccccccccCCcccCCcceEEEecC---CceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISP---TKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~---~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
......|.+..+.|.... .+.+.+|.|... .++|+|+|.|++|++.|+++|+.+|...-..
T Consensus 311 ~~~~~~i~l~~~~v~~~~--~d~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~~~ 374 (385)
T 1txd_A 311 HTFSPVIKLSTVLVRQVA--TDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVKEQ 374 (385)
T ss_dssp -CCCSEEEGGGEEEEECC--C-CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceecccccccccc--cCCceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhccCC
Confidence 111233444444443221 233456766542 4789999999999999999999999887654
No 223
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.50 E-value=6.7e-05 Score=76.28 Aligned_cols=38 Identities=26% Similarity=0.567 Sum_probs=26.7
Q ss_pred CCcceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEec
Q 003309 289 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRK 328 (832)
Q Consensus 289 ~~~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~ 328 (832)
+...|-++|||+|+ +...++|+||||||+++ .+.||+.
T Consensus 17 ~~~~~~~~g~l~~~-~~~~~~w~~rw~vl~~~-~~~~~~~ 54 (228)
T 3tfm_A 17 GPGSPYFHSFLYMN-GGLMNSWKRRWCVLKDE-TFLWFRS 54 (228)
T ss_dssp ----CCEEEEEEEC-CTTTCCCEEEEEEEETT-EEEEESS
T ss_pred CCCCCceEEEEeec-CcccccceEEEEEEeCC-EEEEecc
Confidence 33456789999999 45667899999999954 5555554
No 224
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=97.49 E-value=0.0062 Score=66.23 Aligned_cols=151 Identities=12% Similarity=0.117 Sum_probs=100.2
Q ss_pred HHHHHHHHHhhCC--CCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHh
Q 003309 52 IAFASALETFGGG--HNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKAS 129 (832)
Q Consensus 52 ~~f~~~l~~f~~~--~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~ 129 (832)
..|..+|..++.. .+.......++.+|.++|+.+..+.......-.+....+.++|..++.- +..+++. |....
T Consensus 207 ~~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~~~i~~l~~~qa~~d~~~l~E~L~~Y~~~-l~avKd~---l~~r~ 282 (366)
T 3dyt_A 207 QKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGF-LGCFPDI---IGTHK 282 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHSGGGTHHHHHHHHHHHHHH-HTTHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHH---HHHHH
Confidence 5667777666642 1111111224567888888888888877766666667788888777543 3333322 21111
Q ss_pred HHHHHHHHHHHhcccC---CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 003309 130 LLYDQAREKFLSLRKG---TKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGY 206 (832)
Q Consensus 130 ~~yd~al~k~~~~~k~---k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~ 206 (832)
.++.||....|. .+++ ..++.++++.|...+-.....|..++..+..+|-..|..|+..|..|+++..
T Consensus 283 ----~aL~k~~e~~kl~~~~K~~-----~~~~~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~~qi~~~k~~~ 353 (366)
T 3dyt_A 283 ----GAIEKVKESDKLVATSKIT-----LQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIA 353 (366)
T ss_dssp ----HHHHHHHTHHHHHHTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhccCcc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444433221 1111 1356778899999999999999999999888999999999999999999999
Q ss_pred HHHhhhHHH
Q 003309 207 ELLHQMEPY 215 (832)
Q Consensus 207 ~~~~~l~~~ 215 (832)
+.++.+-+.
T Consensus 354 ~~w~~~l~~ 362 (366)
T 3dyt_A 354 EKLRQALSR 362 (366)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 998776543
No 225
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=97.32 E-value=0.0013 Score=64.10 Aligned_cols=105 Identities=20% Similarity=0.259 Sum_probs=65.4
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
...+++|-|..+.+. +.|+.||++|-++-+++..++..+-. +.. .+.+
T Consensus 69 R~Ll~eG~L~~k~~~--~~~~d~~~fLf~D~Ll~~~~~~~ky~------------------------~~~------~~~~ 116 (185)
T 2lg1_A 69 KKLVRDGSVFLKNAA--GRLKEVQAVLLTDILVFLQEKDQKYI------------------------FAS------LDQK 116 (185)
T ss_dssp SCEEEEEEEEEECTT--CCEEEEEEEEESSEEECCEEETTEEE------------------------CCC------CSSS
T ss_pred CceeeeceEEEeccC--CCeeeEEEEeecCEEEEEEecCCEEE------------------------EEc------ccCC
Confidence 467899999866433 36999999999776666544311100 000 0111
Q ss_pred ccccccccccccccccCCcccCCcceEEEecC----CceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISP----TKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~----~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
...|.+....|+..+. +.+ .|-+++. .+.|.|+|.|.+|++.||++|+.||...-..
T Consensus 117 ---~pvi~L~~~~vre~a~--d~~-~~fli~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~~~~ 177 (185)
T 2lg1_A 117 ---STVISLKKLIVREVAH--EEK-GLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLNRD 177 (185)
T ss_dssp ---CSEEESSSCEEECCSS--CSS-EEEEECCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCeEeecceEEeccCC--CCC-eEEEEEecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhCChh
Confidence 1123444455543233 333 4555542 4799999999999999999999999876543
No 226
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=97.29 E-value=0.0035 Score=77.68 Aligned_cols=102 Identities=16% Similarity=0.276 Sum_probs=66.0
Q ss_pred ceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCC-CCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKS-SGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..+++|.|.+.+++ +.|||+|-++-+++...+..... .|.. ...
T Consensus 443 ~Li~eG~l~~~~~k-----~~r~~FLF~D~Ll~~K~~~~~~~~~g~~------------------------------~~~ 487 (1049)
T 3ksy_A 443 EFIMEGTLTRVGAK-----HERHIFLFDGLMICCKSNHGQPRLPGAS------------------------------NAE 487 (1049)
T ss_dssp CCCCEEEEEETTCS-----SCEEEEEETTEEEEEECCTTCCCCTTSC------------------------------CCS
T ss_pred eEEEeceEEEEccC-----ceEEEEeeCCeEEEEEecCccCCCCCCC------------------------------CCc
Confidence 45789999987532 78999999777777654432111 1100 001
Q ss_pred ccccccccccccccccCCcccCCcceEEEecCC-ceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~-rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
-.....|.+....|....+...-+++|.|.+.+ .+|+|+|.|++|++.||++|+.+..
T Consensus 488 y~~k~~i~L~~l~V~~~~d~~~~~~~F~I~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q~ 546 (1049)
T 3ksy_A 488 YRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQY 546 (1049)
T ss_dssp CCCCCEECCSSCCCCCCCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEcCceEEEECCCCccccceEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 111233444444444333333457999998876 5999999999999999999988874
No 227
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=97.18 E-value=0.15 Score=53.59 Aligned_cols=163 Identities=11% Similarity=0.110 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCC------CCCcc-ccCchHHHHHHHHHHHHHHHHHH
Q 003309 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHN------DPISV-AFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~------~~~~~-~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
..+.|..+++.=++.|+.+.+-+.+-...+..|+..|..+..... +...+ .-...++..+-..+..+...+..
T Consensus 8 g~~~l~~~~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~~~~~~~~~t~~~~w~~~l~~~e~~a~~h~~ 87 (301)
T 2efk_A 8 QFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVNDFAGQREL 87 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444444445677877776643110 11000 01123456666667777778888
Q ss_pred HHHHHHHHHHHHHHHHhHhh---------------------hHHHHHHHHHHHHHhHHHHHHHHHHHhcccCC--chhHH
Q 003309 95 LRSQVEHMLNDRLLQYVNID---------------------LHEVKEARKCFDKASLLYDQAREKFLSLRKGT--KTDVA 151 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~d---------------------i~~~ke~rk~fek~~~~yd~al~k~~~~~k~k--~~~~~ 151 (832)
+...+...+..||..|.++- ...+..+|++|+....+++.+..++....+.. ....+
T Consensus 88 ~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~ 167 (301)
T 2efk_A 88 VAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADV 167 (301)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHH
Confidence 88888888889988886542 22344566777777777777666665443221 11122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 003309 152 AILEEELHSARSAFEQARFSLVTALSNVEAKKR 184 (832)
Q Consensus 152 ~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~ 184 (832)
.-....+...+.....+.-+|...|..++..+.
T Consensus 168 eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~ 200 (301)
T 2efk_A 168 EKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQA 200 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444555555566677778777777765533
No 228
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=97.17 E-value=0.0013 Score=60.31 Aligned_cols=38 Identities=24% Similarity=0.436 Sum_probs=32.4
Q ss_pred CcceEEEecCC--ceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 393 LRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 393 r~~~F~I~t~~--rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
...||.|+..+ +++.|.|.|++|++.|+.+|+..+...
T Consensus 84 ~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L~~~~ 123 (131)
T 1mai_A 84 EDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIHHS 123 (131)
T ss_dssp GGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHHC--
T ss_pred ccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 46799999876 699999999999999999999887543
No 229
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=97.12 E-value=0.0026 Score=69.01 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=66.2
Q ss_pred ceeEEEEEEecCCCC----------CCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccc
Q 003309 292 QTIRQGYLSKRSSNL----------RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSH 361 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~----------~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (832)
..+++|.|.+..+.. +..++.|||+|-++.+++...+.... .|. .
T Consensus 209 ~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~-~~~-----------------~------- 263 (353)
T 1kz7_A 209 KLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENG-EGY-----------------E------- 263 (353)
T ss_dssp CEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCC-SSC-----------------C-------
T ss_pred hhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccc-cCC-----------------C-------
Confidence 468899987542210 22478899999977777765543210 000 0
Q ss_pred cCCCCCCccccccccccccccccccCCcccCCcceEEEec--CCceEEEEeCCHHHHHHHHHHHHHHHHHHHc
Q 003309 362 YHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIIS--PTKNYTLQAESALDQMDWIEKITGVIASLLS 432 (832)
Q Consensus 362 ~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t--~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 432 (832)
....-.....|.+....+....+ +.+++|+|.. +.++|+|+|.|+++++.|+.+|+.+|.....
T Consensus 264 -----~~~~y~~k~~i~l~~~~v~e~~~--~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~ 329 (353)
T 1kz7_A 264 -----KAPSYSYKQSLNMTAVGITENVK--GDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQ 329 (353)
T ss_dssp -----CSCEEEEEEEEEGGGEEEECCBT--TBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCeEEEEEEeEcccceeeEcCC--CCCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 00000112234443333321111 2367899986 4578999999999999999999999976554
No 230
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=97.07 E-value=0.12 Score=56.26 Aligned_cols=59 Identities=10% Similarity=0.250 Sum_probs=40.1
Q ss_pred ccccccccccccCCcc-cCCcceEEEe--------cCCceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 375 HTVNLLTSTIKVDADQ-SDLRFCFRII--------SPTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 375 ~~i~l~~~~v~~~~~~-~~r~~~F~I~--------t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
..|.+....|...++. .+....|+|+ .|.++|+|+|.|++|++.||.+|+.+|....+.
T Consensus 304 ~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~~~~~~ 371 (377)
T 1foe_A 304 HMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRDKHRR 371 (377)
T ss_dssp EEEEGGGEEEECCCCTTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccceEEEecCCCccchhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhhHHhhh
Confidence 3355544444322222 2223458886 356899999999999999999999999875544
No 231
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=96.99 E-value=0.0013 Score=64.36 Aligned_cols=96 Identities=22% Similarity=0.408 Sum_probs=59.7
Q ss_pred eeEEEEEEecCCCCCCCCceeEEEEeC-----Cc-eEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCC
Q 003309 293 TIRQGYLSKRSSNLRGDWKRRFFVLDS-----RG-MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV 366 (832)
Q Consensus 293 ~~k~G~L~K~~~~~~~~WkrRwfvL~~-----~~-~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (832)
.+.||+...|.+ |.||+||+||+. |. .|.-|++..++..+.
T Consensus 9 ~v~eg~vk~r~~---KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~------------------------------ 55 (224)
T 3ml4_A 9 ALVEGQVKLRDG---KKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGL------------------------------ 55 (224)
T ss_dssp CSEEEEEEEC------CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCC------------------------------
T ss_pred eeEEEeeeeecC---CceeeEEEEEEcCCCchheEEEEEEcChhhhhcCC------------------------------
Confidence 467999998843 579999999986 22 466665544322111
Q ss_pred CCccccccccccccc-cccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHH
Q 003309 367 HDEKSAARHTVNLLT-STIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 367 ~~~~~~~~~~i~l~~-~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
.+ +..+.|.. +.+.....-...++.+.|+..+.+++|..||++++.+|-..|+..
T Consensus 56 -~~----KaslsL~~~~GlE~g~~ldk~s~TlAIIc~d~~~vLAFds~e~l~~W~~~l~~s 111 (224)
T 3ml4_A 56 -RE----RSSLTLEDICGLEPALPYEGLAHTLAIICLSQAVMLGFDSHEAMCAWDTRIRYA 111 (224)
T ss_dssp -CC----SEEEEECCEEEEEEEEEETTEEEEEEEEESSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred -cc----cceeehHHhcCccccccccCcccEEEEEecCcEEEEEeCCHHHHHHHHHHHhhc
Confidence 00 01122211 111111112234789999999999999999999999999887653
No 232
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=96.94 E-value=0.0037 Score=66.56 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=65.0
Q ss_pred ceeEEEEEEecCCC-CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 292 QTIRQGYLSKRSSN-LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 292 ~~~k~G~L~K~~~~-~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..+.+|.+....+. ..+..+.|||+|-++-+++....... .+ ...
T Consensus 202 ~li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~--~~--------------------------------~~~ 247 (311)
T 1nty_A 202 ELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDS--SG--------------------------------RSK 247 (311)
T ss_dssp CEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECT--TC--------------------------------CEE
T ss_pred CceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccC--CC--------------------------------Cce
Confidence 45678877665332 23457899999997777766543211 00 000
Q ss_pred ccccccccccccccccCCcccCCcceEEEec-----CCceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIIS-----PTKNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t-----~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
-.....|.+....|....+ ..+++|.|.+ +..+|+|+|.|+++++.|+.+|+.+|...
T Consensus 248 y~~k~~i~l~~~~v~e~~~--~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e~ 310 (311)
T 1nty_A 248 YLYKSKLFTSELGVTEHVE--GDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQER 310 (311)
T ss_dssp EEEEEEEEGGGEEEECCCT--TCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred eEEeeeeeccceeeEEccC--CCCceEEEEeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHhhh
Confidence 1112234444444432112 2367899986 35789999999999999999999999764
No 233
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=96.93 E-value=0.12 Score=55.51 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=31.1
Q ss_pred CcceEEEec----CCceEEEEeCCHHHHHHHHHHHHHHH
Q 003309 393 LRFCFRIIS----PTKNYTLQAESALDQMDWIEKITGVI 427 (832)
Q Consensus 393 r~~~F~I~t----~~rt~~lqA~s~~e~~~Wi~ai~~~i 427 (832)
.+++|.|.. +.++|+|+|.|+++++.|+++|+.||
T Consensus 307 ~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 307 VKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp TSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 368999985 36799999999999999999999987
No 234
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=96.93 E-value=0.1 Score=48.72 Aligned_cols=101 Identities=22% Similarity=0.303 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccc-CCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 101 HMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRK-GTKTDVAAILEEELHSARSAFEQARFSLVTALSNV 179 (832)
Q Consensus 101 ~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k-~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~ 179 (832)
..++..|+++... |..+|-.-+.|++++..||...-|.-.+.| +|..++++.-+..|..+...|...-.|++..|+.+
T Consensus 101 arllekiqkyfQ~-IEtlK~ql~nf~e~RLiYDHYKlKvdELEK~~KdSeKI~RNQsKLssAEtaYkqvcsDiInkMnkl 179 (294)
T 3caz_A 101 ARLLEKIQKYRQE-IEEIKKEYKETDKYRERYDHYKVKLDNLEKKNKDQERIERNQQKFKDAEAAYSSVCADLIQKMETV 179 (294)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHhHHHHHhccchHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3567778887766 888888889999999999999999888866 67788888888889999999999988888888887
Q ss_pred hhhchhhHHH-HHHHHHHHHHHHHH
Q 003309 180 EAKKRFEFLE-AVSGTMDAHLRYFK 203 (832)
Q Consensus 180 ~~~~~~e~l~-~l~~~~~a~~~ff~ 203 (832)
-.+. +.++. .....+..|+.|-+
T Consensus 180 l~n~-~riineaasavwstqlqyak 203 (294)
T 3caz_A 180 WKKH-VSIFAEAASAVWSTQLQYAK 203 (294)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 6553 33433 33334444444443
No 235
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=96.93 E-value=0.06 Score=60.82 Aligned_cols=172 Identities=10% Similarity=0.119 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC------CCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 26 LRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG------HNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQV 99 (832)
Q Consensus 26 l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~------~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~ 99 (832)
|-.+++.-++.|+.+.+-+.+-...+..|+..|..+... ..... .-...++..+-..+..+...+..+...+
T Consensus 27 L~~r~~~g~~~~~el~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~e~--gtl~~aw~~~~~e~e~~a~~H~~~a~~L 104 (486)
T 3haj_A 27 TVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQY--GTVEKAWMAFMSEAERVSELHLEVKASL 104 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333333445566666554321 01111 1122456777777788888888998899
Q ss_pred HHHHHHHHHHHhHhh-----------------------------hHHHHHHHHHHHHHhHHHHHHHHHHHhccc--CCch
Q 003309 100 EHMLNDRLLQYVNID-----------------------------LHEVKEARKCFDKASLLYDQAREKFLSLRK--GTKT 148 (832)
Q Consensus 100 ~~~~~~pL~~f~~~d-----------------------------i~~~ke~rk~fek~~~~yd~al~k~~~~~k--~k~~ 148 (832)
...+++||..|.++- .+.+..+|++|+....+++.+..++..... ...+
T Consensus 105 ~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~ 184 (486)
T 3haj_A 105 MNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNP 184 (486)
T ss_dssp HHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCS
T ss_pred HHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCH
Confidence 899999999987642 123345566666666666666666544321 1122
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHHHH
Q 003309 149 DVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMDAHLR 200 (832)
Q Consensus 149 ~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~a~~~ 200 (832)
..+..+...+..++.....+.-+|...+..++..+. ++.+.+-..+.....
T Consensus 185 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~-~y~~~~~~~~~~lQ~ 235 (486)
T 3haj_A 185 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTP-QYMENMEQVFEQCQQ 235 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 334444556666666777777788888887776542 444444444443333
No 236
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=96.87 E-value=0.4 Score=49.51 Aligned_cols=92 Identities=11% Similarity=0.102 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 22 SAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEH 101 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~ 101 (832)
.++.|..+++.=++.|+.+.+-+.+-...+..|+..|..+...........-...+...+-.....+...|..+...+.
T Consensus 19 g~~~l~~~~~~g~~~~~el~~f~~eRa~iE~eYak~L~kLa~~~~~~~~~gs~~~~w~~~~~~~e~~a~~h~~~a~~l~- 97 (276)
T 2v0o_A 19 GFDVLYHNMKHGQISTKELADFVRERATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLANCHLDLVRKLQ- 97 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSSGGGHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3445555555555555555555444444566777777666431111111112235677787888888888888888884
Q ss_pred HHHHHHHHHhHhh
Q 003309 102 MLNDRLLQYVNID 114 (832)
Q Consensus 102 ~~~~pL~~f~~~d 114 (832)
.++.||..|.++.
T Consensus 98 ~~~~~l~~~~~~~ 110 (276)
T 2v0o_A 98 ELIKEVQKYGEEQ 110 (276)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7889999997653
No 237
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=96.86 E-value=0.00016 Score=82.84 Aligned_cols=115 Identities=22% Similarity=0.249 Sum_probs=0.0
Q ss_pred ceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCC-CCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 292 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKS-SGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 292 ~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..+++|.|.|. ++++.|||+|-++-+++......... .|.. ..+ ....+ ...
T Consensus 252 ~li~eG~l~~~-----~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~--------------~~f----~~~~~----~~~ 304 (510)
T 3jzy_A 252 KLLHSGKLYKT-----KSNKELHGFLFNDFLLLTYMVKQFAVSSGSE--------------KLF----SSKSN----AQF 304 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEeceEEEc-----CCCcEEEEEcccceeEEeeecccccccCCcc--------------ccc----Ccccc----cce
Confidence 45789999875 34789999999777776543322100 0000 000 00000 000
Q ss_pred ccccccccccccccccCCcccCCcceEEEecCCceEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 433 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~rt~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 433 (832)
.+....|.+....|....+....++||+|.++.++|+|+|.|++|+..|+.+|+.+|......
T Consensus 305 ~v~k~~i~l~~~~v~~~~d~~~~~~~F~i~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~~ 367 (510)
T 3jzy_A 305 KMYKTPIFLNEVLVKLPTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYIDT 367 (510)
T ss_dssp ---------------------------------------------------------------
T ss_pred eEEcCceehhheEEeccCCCCccccceeeeccceeEEeccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 011223444444444322333557999999999999999999999999999999999877544
No 238
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=96.82 E-value=0.14 Score=54.88 Aligned_cols=166 Identities=10% Similarity=0.105 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCC------CCCCccccCchHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGH------NDPISVAFGGPVMTKFTIALREIGTYKEVLR 96 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~------~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~ 96 (832)
.+.|..+++.-++.|+.+.+-+.+-...+..|+..|..+.... .+.. .-+..++..+-..+..+...|..+.
T Consensus 22 ~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~~~~~--gtl~~aw~~~~~e~e~~a~~H~~~a 99 (337)
T 2x3v_A 22 YKRTVKRIDDGHRLCNDLMSCVQERAKIEKAYAQQLTDWAKRWRQLIEKGPQY--GSLERAWGAMMTEADKVSELHQEVK 99 (337)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544444444566777766553211 1111 1122456777777778888888898
Q ss_pred HHHHHHHHHHHHHHhHhh--------h---------------------HHHHHHHHHHHHHhHHHHHHHHHHHhcccC--
Q 003309 97 SQVEHMLNDRLLQYVNID--------L---------------------HEVKEARKCFDKASLLYDQAREKFLSLRKG-- 145 (832)
Q Consensus 97 ~~~~~~~~~pL~~f~~~d--------i---------------------~~~ke~rk~fek~~~~yd~al~k~~~~~k~-- 145 (832)
..+...++.||..|.++. + ..+..+|+.|+....+++.+..++...+..
T Consensus 100 ~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~ 179 (337)
T 2x3v_A 100 NSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQS 179 (337)
T ss_dssp HHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccccCcc
Confidence 888888999999886632 1 234455666666666666665554333221
Q ss_pred CchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHH
Q 003309 146 TKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAV 191 (832)
Q Consensus 146 k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l 191 (832)
..+..+.-+...+..++..-..+.-+|...+..++.. +..+.+.+
T Consensus 180 ~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~-~~~~~~~~ 224 (337)
T 2x3v_A 180 VTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKT-TPQYMEGM 224 (337)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 1223333444456666666666667777777776655 32444433
No 239
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=96.79 E-value=0.0058 Score=66.29 Aligned_cols=106 Identities=13% Similarity=0.173 Sum_probs=62.4
Q ss_pred ceeEEEEEEecCCC----CCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCC
Q 003309 292 QTIRQGYLSKRSSN----LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH 367 (832)
Q Consensus 292 ~~~k~G~L~K~~~~----~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (832)
..+++|-+..+.+. ..+.++.|||+|-++-+++........ .|..
T Consensus 206 ~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~-~~~~------------------------------ 254 (354)
T 2rgn_B 206 KLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGV-RGGT------------------------------ 254 (354)
T ss_dssp CEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC--------------------------------------
T ss_pred cccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCC-CCCC------------------------------
Confidence 45778877655322 234678999999977777665443210 0000
Q ss_pred CccccccccccccccccccCCcccCCcceEEEecC-----CceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 003309 368 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP-----TKNYTLQAESALDQMDWIEKITGVIASL 430 (832)
Q Consensus 368 ~~~~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~-----~rt~~lqA~s~~e~~~Wi~ai~~~i~~~ 430 (832)
...-.....|.+....|....+ +.+++|.|+.. ..+|+|+|.|+++++.|+.+|+.+|...
T Consensus 255 ~~~y~~k~~i~l~~~~v~~~~~--~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 320 (354)
T 2rgn_B 255 QPGYVYKNSIKVSCLGLEGNLQ--GDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQ 320 (354)
T ss_dssp -CCEEEEEEEEGGGEEEEESGG--GCTTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEcceeeccceeeeeccC--CCCceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 0000112234443333321111 22578999863 3689999999999999999999999653
No 240
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=96.73 E-value=0.13 Score=55.35 Aligned_cols=159 Identities=10% Similarity=0.086 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCC------CCCCccccCchHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGH------NDPISVAFGGPVMTKFTIALREIGTYKEVLR 96 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~------~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~ 96 (832)
.+.|..+++.=++.|+.+.+-+.+-...+..|+..|..+.... .+.. .-...++..+-..+..+...|..+.
T Consensus 31 ~~~L~~r~~~g~~~~~el~~f~keRa~IE~eYak~L~kLakk~~~~~~~~~e~--gtl~~aw~~l~~e~e~~a~~H~~la 108 (350)
T 3aco_A 31 YKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQY--GTVEKAWMAFMSEAERVSELHLEVK 108 (350)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555544444444566777776553210 1111 1122456777777888888899999
Q ss_pred HHHHHHHHHHHHHHhHh--------hhH---------------------HHHHHHHHHHHHhHHHHHHHHHHHhcccCC-
Q 003309 97 SQVEHMLNDRLLQYVNI--------DLH---------------------EVKEARKCFDKASLLYDQAREKFLSLRKGT- 146 (832)
Q Consensus 97 ~~~~~~~~~pL~~f~~~--------di~---------------------~~ke~rk~fek~~~~yd~al~k~~~~~k~k- 146 (832)
..+...++.||..|.++ .++ .+..+|++|+....+++.+..++.......
T Consensus 109 ~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~ 188 (350)
T 3aco_A 109 ASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPS 188 (350)
T ss_dssp HHHHHTHHHHHHHHHHTTSCBCTTSSBHHHHHHHHHHHHHTSHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence 99999999999988664 122 334455556666666666665554332211
Q ss_pred -chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 003309 147 -KTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKK 183 (832)
Q Consensus 147 -~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~ 183 (832)
.+..+..+...+..++..-..+.-+|...+..++..+
T Consensus 189 ~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~ 226 (350)
T 3aco_A 189 LNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGT 226 (350)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233344445566666666667777877777776553
No 241
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=96.73 E-value=0.15 Score=55.79 Aligned_cols=155 Identities=10% Similarity=0.027 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCc-hHHHHHHHHHHHHHHHHHHHHH
Q 003309 19 LEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGG-PVMTKFTIALREIGTYKEVLRS 97 (832)
Q Consensus 19 ~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~-~~l~~f~~~l~ei~~~~~~l~~ 97 (832)
|-..|..++..++.+-+.+++++......+.+...+..++..|.....+.....++. ..=..++.++..+......+ .
T Consensus 19 FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei-~ 97 (385)
T 2q13_A 19 TRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDEL-S 97 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHH-H
Confidence 567889999999999999999999888888888899999988877544432211111 01122456788888877766 4
Q ss_pred HHHHHHHHHHHHHhHhhhHHHH-HHHHHHHHHhHHHHHHHHHHH-hcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003309 98 QVEHMLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKFL-SLRKGTKTDVAAILEEELHSARSAFEQARFSLVT 174 (832)
Q Consensus 98 ~~~~~~~~pL~~f~~~di~~~k-e~rk~fek~~~~yd~al~k~~-~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~ 174 (832)
.....+...++..+..-|..+. ..-+.+...+..||.+..+|- .+.|-....+..+.+..+.++...+..+.-.|..
T Consensus 98 ~~~~~l~~~~~~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~k~~~~~k~k~~e~~~~ea~~~l~~~rk~f~~ 176 (385)
T 2q13_A 98 SCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQ 176 (385)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 5556677777776655565554 444667788889998888874 3344221122222233344554445455444443
No 242
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=96.69 E-value=0.24 Score=54.51 Aligned_cols=123 Identities=10% Similarity=0.046 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccC-chHHHHHHHHHHHHHHHHHHHHH
Q 003309 19 LEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFG-GPVMTKFTIALREIGTYKEVLRS 97 (832)
Q Consensus 19 ~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~-~~~l~~f~~~l~ei~~~~~~l~~ 97 (832)
|-..|..++..++.+-+.++++++...+.+.+...|..+...|.....+.....++ +..-..+..++.++......+..
T Consensus 42 FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~ 121 (407)
T 4h8s_A 42 TRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNL 121 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 55788999999999999999999988888888889999998887654443222111 11112345566666666555543
Q ss_pred HHHHHHHHHHHHHhHhhhHHHH-HHHHHHHHHhHHHHHHHHHHHhc
Q 003309 98 QVEHMLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKFLSL 142 (832)
Q Consensus 98 ~~~~~~~~pL~~f~~~di~~~k-e~rk~fek~~~~yd~al~k~~~~ 142 (832)
....+...++..+-.-|..+. +.-+.|...+..||.+..+|-+.
T Consensus 122 -~~~~L~~~~~~~i~~pL~~f~k~di~~~ke~kK~Fek~~~~Yd~~ 166 (407)
T 4h8s_A 122 -LHTELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLS 166 (407)
T ss_dssp -HHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667766666666553 55677888899999998887543
No 243
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=96.63 E-value=0.22 Score=51.25 Aligned_cols=213 Identities=8% Similarity=0.037 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCcc----ccCchHHHHHHHHHHHHHHHHHH
Q 003309 19 LEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISV----AFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 19 ~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~----~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
|-..|..++..++.+-+.+++++......+.+...+..+...|.....+.... ...++. ++.++..+......
T Consensus 19 FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~---~~~~L~~f~~~l~e 95 (265)
T 2q12_A 19 TRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEV---MSSTLQQFSKVIDE 95 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHH---HHHHHHHHHHHHHH
Confidence 55788999999999999999999987888888889998888887765443221 112332 35777777777666
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHH-HHHHHHHHHhHHHHHHHHHHHh-cccCCchhHHhHHHHHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVK-EARKCFDKASLLYDQAREKFLS-LRKGTKTDVAAILEEELHSARSAFEQARFSL 172 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~k-e~rk~fek~~~~yd~al~k~~~-~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~ 172 (832)
+.. ....+...++..+..-|..+. +--+.+...+..||.+..+|-+ +.|-....+....+..+.++-..+..+.-.|
T Consensus 96 i~~-~~~~l~~~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k~~e~~l~Ea~~~l~~~Rk~f 174 (265)
T 2q12_A 96 LSS-CHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQ 174 (265)
T ss_dssp HHH-HHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 653 344455666665555566554 4456788889999998888743 3443222222222344556666666655555
Q ss_pred HHHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHH
Q 003309 173 VTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYI-NQVLTYAQQSRERSNYEQA 235 (832)
Q Consensus 173 ~~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~-~~l~~~~~~~r~~~~~~~~ 235 (832)
....-+.-....--....=..++.....|++..+..+.+--..+ +++..++.......+..++
T Consensus 175 ~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~~~l~~~r~ 238 (265)
T 2q12_A 175 HQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRR 238 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332221111100011112455555555555555554444444 3555555555555544433
No 244
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=96.33 E-value=0.35 Score=53.09 Aligned_cols=150 Identities=8% Similarity=0.016 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCC-----CCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 28 ERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHND-----PISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHM 102 (832)
Q Consensus 28 ~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~-----~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~ 102 (832)
++++.=++.|+++.+...+-...+..|+..|..+...... .....-...+...|-.....++..|..+-..+...
T Consensus 19 kr~~~g~~lledl~~F~reRA~IE~eYAk~L~kLakk~~~k~~~~~~~~~tl~~aW~~ll~ete~~a~~H~~lae~L~~~ 98 (406)
T 4dyl_A 19 QMQEAELRLLEGMRKWMAQRVKSDREYAGLLHHMSLQDSGGQSRAISPDSPISQSWAEITSQTEGLSRLLRQHAEDLNSG 98 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333456788888776542111 11111122466777777788888888888888888
Q ss_pred HHHHHHHHhHhh---------------------h-HHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHH
Q 003309 103 LNDRLLQYVNID---------------------L-HEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHS 160 (832)
Q Consensus 103 ~~~pL~~f~~~d---------------------i-~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~ 160 (832)
++.||..|+++- + +.+..+||.|+....+.+.+..+|....+.++.+++ ...+..
T Consensus 99 v~~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~ke~eK~---~~k~~k 175 (406)
T 4dyl_A 99 PLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKA---KDKYVR 175 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC---------CHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHH---HHHHHH
Confidence 888888886642 1 345566677777777777777666555433332322 223333
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 003309 161 ARSAFEQARFSLVTALSNVE 180 (832)
Q Consensus 161 ~r~~f~~~sld~~~~l~~~~ 180 (832)
+......+.=+|...|+.++
T Consensus 176 ~~~~~~~a~neY~~~l~~~N 195 (406)
T 4dyl_A 176 SLWKLFAHHNRYVLGVRAAQ 195 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444446665555544
No 245
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.087 Score=54.53 Aligned_cols=170 Identities=14% Similarity=0.105 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCC------------CC------------CccccCch
Q 003309 21 ESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHN------------DP------------ISVAFGGP 76 (832)
Q Consensus 21 ~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~------------~~------------~~~~~~~~ 76 (832)
+.++.|..+|....+.|+.+.+...+....+..|+..|.++..... .. .......+
T Consensus 43 qa~~iL~~Rl~~~k~i~keL~~f~kERa~IEe~YakqLrkLakk~~~l~k~~~~~~~~~~vlt~ee~~~~~~~e~G~l~~ 122 (287)
T 3g9g_A 43 EATETIRIRLSQVKLLNKDFYLLFKELANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQEMSAFRFNSLGELRN 122 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTSSCHHHHHHCCCCCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccccchhhccccccccccHHH
Confidence 5567777777777777777777766666667778877766533111 00 11111235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHH
Q 003309 77 VMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNID--LHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAIL 154 (832)
Q Consensus 77 ~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~d--i~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~ 154 (832)
+...+-..+..+...+..+..++...+..||.+|.+.+ +.+.+..-.+.+....++|.+ +++.+ +
T Consensus 123 ~W~~v~~e~e~~a~~H~~la~~L~~ev~~pL~~~~e~~~~~~e~~~l~~~L~~~ak~le~~-------~kk~~------a 189 (287)
T 3g9g_A 123 VWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVENNTSWRESKDLHSKLSKNAASIEHY-------SKNNE------N 189 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSSSSCHHHHHHHHHHHHHHHHHHHHHHC-------SSCCS------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH-------HhhHH------H
Confidence 67888888888889999999999999999999998753 344333333444444444432 22211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHH-HHHHHHHHHHHHHHH
Q 003309 155 EEELHSARSAFEQARFSLVTALSNVEAKKRFEFLE-AVSGTMDAHLRYFKQ 204 (832)
Q Consensus 155 ~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~-~l~~~~~a~~~ff~~ 204 (832)
...|.+++..+...+=.++..+++++..+ +.+|. .|..|.....++..+
T Consensus 190 ~~~le~a~~qWes~aP~~fe~fQ~lEEeR-L~~Lkd~L~~y~~~~sd~~~~ 239 (287)
T 3g9g_A 190 SSHLEEARRQWDQQSPYLFELFETIDYNR-LDTLKNCMLRFQTSFSDYLLN 239 (287)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34688889999888888888888887653 33333 333444444444333
No 246
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=96.13 E-value=0.14 Score=54.13 Aligned_cols=89 Identities=9% Similarity=0.030 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCC------CCCCccccCchHHHHHHHHHHHHHHHHHHHH
Q 003309 23 AEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGH------NDPISVAFGGPVMTKFTIALREIGTYKEVLR 96 (832)
Q Consensus 23 i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~------~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~ 96 (832)
.+.|..+++.=++.|+.+.+-+.+-...+..|+..|..+.... .... .-...++..+-..+..+...|..+-
T Consensus 31 ~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~~~e~--gtl~~aw~~i~~e~e~~a~~H~~~a 108 (312)
T 3abh_A 31 YKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQY--GTVEKAWMAFMSEAERVSELHLEVK 108 (312)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555444443344556666665553211 1111 1123467778888888888899999
Q ss_pred HHHHHHHHHHHHHHhHh
Q 003309 97 SQVEHMLNDRLLQYVNI 113 (832)
Q Consensus 97 ~~~~~~~~~pL~~f~~~ 113 (832)
..+...++.||..|.++
T Consensus 109 ~~L~~~v~~~l~~~~~~ 125 (312)
T 3abh_A 109 ASLMNDDFEKIKNWQKE 125 (312)
T ss_dssp HHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988664
No 247
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=95.12 E-value=0.069 Score=62.31 Aligned_cols=95 Identities=19% Similarity=0.380 Sum_probs=55.2
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
..+++.|++.|+++.....|+||+|.|..+++-.. ... ..+. .
T Consensus 557 ~~~i~~G~~~k~~g~f~~~~~rR~~~l~p~r~e~~-~e~-~~~~-----------------------------------~ 599 (689)
T 3v5w_A 557 KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWR-GEG-EAPQ-----------------------------------S 599 (689)
T ss_dssp SCCCEEEEEEEC-------CEEEEEEEETTEEEEE-CTT-SCCC-----------------------------------E
T ss_pred CcceeecccccCCCcccchhhhhccccCCCccccc-ccC-CCCc-----------------------------------c
Confidence 35689999999977666789999999986554432 111 0000 0
Q ss_pred ccccccccccccccccCCcccCCcceEEEecC-CceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~-~rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
......+.. |. ........||.+... .++|.+++.|+.++.+|...|+.+-.
T Consensus 600 l~~~~~v~~----v~--k~~i~~~~~l~~~~k~~k~f~~~t~~~~~~~~W~~~i~~~~~ 652 (689)
T 3v5w_A 600 LLTMEEIQS----VE--ETQIKERKCLLLKIRGGKQFILQCDSDPELVQWKKELRDAYR 652 (689)
T ss_dssp EEEGGGEEE----EE--EEESSSCEEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eeeeccccc----cc--cCcCCCCcceeeeecCCcEEEEECCChHHHHHHHHHHHHHHH
Confidence 000011111 10 011123467888764 58999999999999999999998764
No 248
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=94.88 E-value=1.6 Score=46.13 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCC------CCCCCccccCchHHHHHHHHHHHHHHHHHHHHH
Q 003309 24 EVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGG------HNDPISVAFGGPVMTKFTIALREIGTYKEVLRS 97 (832)
Q Consensus 24 ~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~------~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~ 97 (832)
+.|.++++.=++.|+.+.+-+.+-...+..|+..|..+... ..+. ..-...++..+-..+..+...|..+..
T Consensus 23 ~~l~~~~~~g~~~~~el~~f~keRa~iE~~Yak~L~kLakk~~~~~~~~~e--~gsl~~aw~~i~~e~e~~a~~H~~~a~ 100 (320)
T 3m3w_A 23 RRTVQRVEDGHRLCGDLVSCFQERARIEKAYAQQLADWARKWRGAVEKGPQ--YGTLEKAWHAFFTAAERLSELHLEVRE 100 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544444434455666666554321 0111 111224567777788888888999999
Q ss_pred HHHHHHHHHHHHHhH
Q 003309 98 QVEHMLNDRLLQYVN 112 (832)
Q Consensus 98 ~~~~~~~~pL~~f~~ 112 (832)
.+...+..||..|.+
T Consensus 101 ~l~~~v~~~l~~~~k 115 (320)
T 3m3w_A 101 KLHGPDSERVRTWQR 115 (320)
T ss_dssp HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998875
No 249
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=94.49 E-value=2.2 Score=44.21 Aligned_cols=38 Identities=5% Similarity=0.074 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003309 76 PVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNI 113 (832)
Q Consensus 76 ~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~ 113 (832)
.++..+-..+..+...+..+...+...++.||..|.++
T Consensus 67 ~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e 104 (290)
T 3i2w_A 67 AAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKE 104 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777888889999999999999999999864
No 250
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=93.10 E-value=0.091 Score=53.91 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=32.9
Q ss_pred CcceEEEecCC--ceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 393 LRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 393 r~~~F~I~t~~--rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
++++|+|.+++ .+++|+|++.+++.+|+.+|+.+|.
T Consensus 225 ~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i~ 262 (263)
T 1z87_A 225 EPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG 262 (263)
T ss_dssp SSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence 78999999986 5799999999999999999999873
No 251
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=92.79 E-value=0.14 Score=45.60 Aligned_cols=100 Identities=13% Similarity=0.155 Sum_probs=60.9
Q ss_pred cceeEEEEEEecCCCCCCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCcc
Q 003309 291 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 370 (832)
Q Consensus 291 ~~~~k~G~L~K~~~~~~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (832)
+..+++|++.-..+. + .=+.||++|-...+++.... .. .+...|
T Consensus 8 G~Ll~q~~f~V~~~~-~-k~~eR~vFLFe~~ilf~K~~-~~--~~~~~Y------------------------------- 51 (119)
T 1fho_A 8 GRIIRHDAFQVWEGD-E-PPKLRYVFLFRNKIMFTEQD-AS--TSPPSY------------------------------- 51 (119)
T ss_dssp CCSSEEEEEEECSTT-C-SCEEEEEEEETTEEEEEEEC-CS--SSSCCC-------------------------------
T ss_pred CCccccCceEEEeCC-C-CcceEEEEEecCcEEEEEEe-cC--CCCCcE-------------------------------
Confidence 456789999888653 2 24679999996666665544 11 111000
Q ss_pred ccccccccccccccccCCcccCCcceEEEecCC--ceEEE--EeCCHH-HHHHHHHHHHHHHH
Q 003309 371 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPT--KNYTL--QAESAL-DQMDWIEKITGVIA 428 (832)
Q Consensus 371 ~~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~--rt~~l--qA~s~~-e~~~Wi~ai~~~i~ 428 (832)
.....|.+....+....++ +.+..|+|..+. ..|++ ||.|.+ ..+.||..|+..+.
T Consensus 52 -~~K~~ikl~~~~lte~~~~-~d~~kFeiw~~~~~~~~il~~qA~s~e~~K~~Wv~~I~~~~~ 112 (119)
T 1fho_A 52 -THYSSIRLDKYNIRQHTTD-EDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQE 112 (119)
T ss_dssp -SSCCEEESSSCEEEEECTT-CCEEEEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCH
T ss_pred -EEeeEEeeceeEEEecCCC-CCCcEEEEccCCCCceEEEeeecCCcHHHHHHHHHHHHHHHH
Confidence 0112233333333322221 224669998766 46888 999999 99999999988443
No 252
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=92.59 E-value=0.15 Score=48.42 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=40.1
Q ss_pred ccccccccccc--CCcccCCcceEEEecCC--ceEEEEeCCHHHHHHHHHHHHHHHH
Q 003309 376 TVNLLTSTIKV--DADQSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIA 428 (832)
Q Consensus 376 ~i~l~~~~v~~--~~~~~~r~~~F~I~t~~--rt~~lqA~s~~e~~~Wi~ai~~~i~ 428 (832)
.|.|..|-|.. ...+. ++.+|||.+++ .+.+|+|.+..+..+|+.+|...|.
T Consensus 122 ~IPLkMayvtR~~~~tD~-e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni~ 177 (178)
T 2adz_A 122 HVSLKMAYVSRRCTPTDP-EPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG 177 (178)
T ss_dssp EEETTTCEEEEECCSSCC-SSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred eecHHHHHHHHhccCCCC-CccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 35666666543 22333 56799999987 5899999999999999999998873
No 253
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=89.67 E-value=15 Score=43.30 Aligned_cols=92 Identities=16% Similarity=0.348 Sum_probs=53.2
Q ss_pred eeEEEEEEecCCCC-CCCCceeEEEEeCCceEEEEecCCCCCCCCCCCCccccCcCccCCCccccccccccCCCCCCccc
Q 003309 293 TIRQGYLSKRSSNL-RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 371 (832)
Q Consensus 293 ~~k~G~L~K~~~~~-~~~WkrRwfvL~~~~~l~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (832)
++..|||.....+. +.+=|..||||....+-||.+..+. ... ..
T Consensus 540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------------------------------~~ 584 (772)
T 3zvr_A 540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEK-EKK----------------------------------YM 584 (772)
T ss_dssp EEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCC-CEE----------------------------------EE
T ss_pred ceeeeeeeecccccccCCCccceeeccccccccccchhhh-ccc----------------------------------cc
Confidence 78999999876553 4567889999997777666443322 100 00
Q ss_pred cccccccccccccccCCcccCCcceEEEecCC--------ceEEEEeCCHHHHHHHHHHH
Q 003309 372 AARHTVNLLTSTIKVDADQSDLRFCFRIISPT--------KNYTLQAESALDQMDWIEKI 423 (832)
Q Consensus 372 ~~~~~i~l~~~~v~~~~~~~~r~~~F~I~t~~--------rt~~lqA~s~~e~~~Wi~ai 423 (832)
.+.+.+.+. .+. .---.+++.|.|..+. |++-|.|+|.++.+.|...+
T Consensus 585 ~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 640 (772)
T 3zvr_A 585 LSVDNLKLR--DVE--KGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASF 640 (772)
T ss_dssp EECTTEEEE--EC---------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHH
T ss_pred ccccccccc--hhh--hccccccccccccCCccccccchhhhhhhhccccccchhhHHhh
Confidence 000111110 010 0001356889888754 57899999999999999765
No 254
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=84.53 E-value=38 Score=34.52 Aligned_cols=165 Identities=12% Similarity=0.088 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHH---H
Q 003309 20 EESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVL---R 96 (832)
Q Consensus 20 E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l---~ 96 (832)
+.=|+.+=.+++.-++.|+++...+.+-...+..|+..|.++.....+.+.....+|...-|..++..-..+...+ .
T Consensus 13 d~Gv~~lL~r~K~s~~~~Ke~~~flkKRa~lE~E~Ak~L~KLa~~~~~~~~~~~~~pl~~i~~~~le~d~~~~~~~~~~~ 92 (279)
T 3qwe_A 13 KGGVDAALEYAKTWSRYAKELLAWTEKRASYELEFAKSTMKIAEAGKVSIQQQSHMPLQYIYTLFLEHDLSLGTLAMETV 92 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777888888888888877777666778888887764210000000000122333333333322222211 1
Q ss_pred HHHHHHHHHHHHHHhHhhhH--------------HHHHHHHHHHHHhHHHHHHHHHHHhcccCCc----------hhH-H
Q 003309 97 SQVEHMLNDRLLQYVNIDLH--------------EVKEARKCFDKASLLYDQAREKFLSLRKGTK----------TDV-A 151 (832)
Q Consensus 97 ~~~~~~~~~pL~~f~~~di~--------------~~ke~rk~fek~~~~yd~al~k~~~~~k~k~----------~~~-~ 151 (832)
....+.|.+||..+..+--+ .+.++--..+|++..|++.-+-|-.++.... ..+ +
T Consensus 93 ~lq~~~~~~~L~~~~~e~ek~RK~~Ke~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~l 172 (279)
T 3qwe_A 93 AQQKRDYYQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQ 172 (279)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-------------HHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 12235777888777554222 2333334455666667766666655543321 001 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 003309 152 AILEEELHSARSAFEQARFSLVTALSNVEAKKR 184 (832)
Q Consensus 152 ~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~ 184 (832)
.-....=++++..-+.+..+|-.++.+.+.++.
T Consensus 173 ek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~ 205 (279)
T 3qwe_A 173 ERRRRSREEAQAKAQEAEALYQACVREANARQQ 205 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222234566667778888888877776654
No 255
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=83.13 E-value=42 Score=33.91 Aligned_cols=22 Identities=0% Similarity=0.262 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHH
Q 003309 115 LHEVKEARKCFDKASLLYDQAR 136 (832)
Q Consensus 115 i~~~ke~rk~fek~~~~yd~al 136 (832)
+..+..+|++|+....+++.+.
T Consensus 135 ~~~l~Kak~~Y~~~c~e~e~~~ 156 (276)
T 2v0o_A 135 TQALQKSKENYNAKCVEQERLK 156 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777544
No 256
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=81.07 E-value=39 Score=33.25 Aligned_cols=95 Identities=13% Similarity=0.198 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 25 VLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLN 104 (832)
Q Consensus 25 ~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~~~~~~~~~~~~~~~l~~f~~~l~ei~~~~~~l~~~~~~~~~ 104 (832)
.+-..|.+|+|.=+.++.++..+...-...+..|...+...+|.+ .....+.+..+.++......+.+..+. +-
T Consensus 20 e~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~~edddl-----~DIsdklgvLl~e~ge~e~~~a~~~d~-yR 93 (234)
T 3plt_A 20 ELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDV-----SDVTDKLGVLIYELGELQDQFIDKYDQ-YR 93 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 455678889988888888766666556677788888877543322 356788888888888887777655443 33
Q ss_pred HHHHHHhH--hhhHHHHHHHHHH
Q 003309 105 DRLLQYVN--IDLHEVKEARKCF 125 (832)
Q Consensus 105 ~pL~~f~~--~di~~~ke~rk~f 125 (832)
..|..+++ ..|.+.++.|++.
T Consensus 94 ~~LK~IR~~E~svqp~R~~R~~l 116 (234)
T 3plt_A 94 VTLKSIRNIEASVQPSRDRKEKI 116 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444433 2344444444443
No 257
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=79.98 E-value=50 Score=32.80 Aligned_cols=208 Identities=10% Similarity=0.043 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC--CCCCC-CccccCchHHHHHHHHHHHHHHHHHH
Q 003309 18 GLEESAEVLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGG--GHNDP-ISVAFGGPVMTKFTIALREIGTYKEV 94 (832)
Q Consensus 18 ~~E~~i~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~l~~f~~--~~~~~-~~~~~~~~~l~~f~~~l~ei~~~~~~ 94 (832)
.+..+...++..++.+.+.|..++..+..+...+...-..+..+.+ -.... -....+. ....+|.++.+......
T Consensus 12 el~~d~~~lE~r~d~~~~~~~~l~k~~~~yl~pn~~~r~~~~~~~~i~k~~~~~k~~~~~~-~~~~L~~~m~~~~~~l~- 89 (240)
T 2z0v_A 12 KLDDEFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQ-TEGLLGDCMLKYGKELG- 89 (240)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHTCCCCCCSSCCCCCCSSCC-HHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHhccccCCCCCC-cHHHHHHHHHHHHhhcC-
Confidence 3678899999999999999999998744433322222222322221 01100 0011111 12335555544333211
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHH-hHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHH
Q 003309 95 LRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKA-SLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLV 173 (832)
Q Consensus 95 l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~-~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~ 173 (832)
-++.+..-|..|-.. ...+-+.+..|+.. +..|=.-+.+++ ...-.++..+|+.+.+.++||=
T Consensus 90 ----~ds~~g~aL~~~g~a-~~~ia~~~~~~~~~v~~~~l~pL~~~l-----------~~d~k~i~~~rKkle~~rLd~D 153 (240)
T 2z0v_A 90 ----EDSTFGNALIEVGES-MKLMAEVKDSLDINVKQTFIDPLQLLQ-----------DKDLKEIGHHLKKLEGRRLDYD 153 (240)
T ss_dssp ----TTCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTHHHHHHHH-----------HTHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444444333 23334444444332 222222222221 1122356778999999999998
Q ss_pred HHHHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 174 TALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQE 243 (832)
Q Consensus 174 ~~l~~~~~~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l~~~~~~l~~~~~~~r~~~~~~~~~l~~~~~~ 243 (832)
..-..+...-+-|+-+.--.|..+...+.....++++.=-++++.+...++....-+..-.+.|.+....
T Consensus 154 ~ak~k~~k~~eeEl~~A~~~fe~~~e~~~~~m~~~~~~~~e~l~~l~~~v~aQl~y~~~~~e~L~~l~~~ 223 (240)
T 2z0v_A 154 YKKKRVGKIPDEEVRQAVEKFEESKELAERSMFNFLENDVEQVSQLAVFIEAALDYHRQSTEILQELQSK 223 (240)
T ss_dssp HHHTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655543322435444555566666666666555554435566666666666655555444444444333
No 258
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=76.50 E-value=1.5 Score=31.62 Aligned_cols=37 Identities=30% Similarity=0.680 Sum_probs=30.2
Q ss_pred CCCccccCCCC-CCCeeecccceeecccchhhhhccCC
Q 003309 511 GNDRCADCGAP-EPDWASLNLGVLVCIECSGVHRNLGV 547 (832)
Q Consensus 511 ~n~~c~dc~~~-~p~w~s~n~g~~~c~~Csg~hr~lg~ 547 (832)
....|.+|+.. -|.|-.-.-|..+|-.|.-.++.-|+
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ 40 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCS
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCC
Confidence 45789999996 48999999999999999766665444
No 259
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=73.62 E-value=1.9 Score=30.56 Aligned_cols=34 Identities=24% Similarity=0.534 Sum_probs=28.2
Q ss_pred CccccCCCC-CCCeeecccceeecccchhhhhccC
Q 003309 513 DRCADCGAP-EPDWASLNLGVLVCIECSGVHRNLG 546 (832)
Q Consensus 513 ~~c~dc~~~-~p~w~s~n~g~~~c~~Csg~hr~lg 546 (832)
..|.+|+.. -|.|-.-..|..+|-.|.-..|.-|
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 36 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 36 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhC
Confidence 479999997 4899999999999999976665544
No 260
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=72.48 E-value=9.6 Score=45.37 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=31.3
Q ss_pred cceEEEecCC-----ceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 394 RFCFRIISPT-----KNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 394 ~~~F~I~t~~-----rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
..||.|+... +++.|.|.|+++.+.|+..|+..+....
T Consensus 96 ~~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~~~~ 138 (799)
T 2zkm_X 96 LKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKHPL 138 (799)
T ss_dssp GTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHCTT
T ss_pred cceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 4689998754 3689999999999999999998776543
No 261
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=70.88 E-value=1.9 Score=33.42 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=31.2
Q ss_pred CCCCccccCCCC-CCCeeecccceeecccchhhhhccCC
Q 003309 510 CGNDRCADCGAP-EPDWASLNLGVLVCIECSGVHRNLGV 547 (832)
Q Consensus 510 ~~n~~c~dc~~~-~p~w~s~n~g~~~c~~Csg~hr~lg~ 547 (832)
.....|.+|+.. -|.|-.-..|-++|-.|.=..+.-|+
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 356789999996 48999999999999999766665554
No 262
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=69.21 E-value=3.1 Score=32.53 Aligned_cols=37 Identities=27% Similarity=0.573 Sum_probs=30.4
Q ss_pred CCCccccCCCC-CCCeeecccceeecccchhhhhccCC
Q 003309 511 GNDRCADCGAP-EPDWASLNLGVLVCIECSGVHRNLGV 547 (832)
Q Consensus 511 ~n~~c~dc~~~-~p~w~s~n~g~~~c~~Csg~hr~lg~ 547 (832)
+...|++|+.. -|.|-.-.-|-.||-.|--..+.-|+
T Consensus 8 ~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 45799999996 59999999999999999766665443
No 263
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=68.74 E-value=1.1e+02 Score=31.22 Aligned_cols=116 Identities=9% Similarity=0.040 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHH-------hcccCCchhHH
Q 003309 79 TKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFL-------SLRKGTKTDVA 151 (832)
Q Consensus 79 ~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~-------~~~k~k~~~~~ 151 (832)
.+|.+-|.++...++.....+...+..--.. +.+-+..++.+|-+|....++||.+..--. +..-.|..++.
T Consensus 97 ~~~~~~L~~~~~e~ek~RK~~Ke~w~r~eKk-~~dae~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~ 175 (279)
T 3qwe_A 97 RDYYQPLAAKRTEIEKWRKEFKEQWMKEQKR-MNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERR 175 (279)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHH
Confidence 4666666666666666666666666644333 344467889999999999999997654211 11112222221
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHH
Q 003309 152 ----AILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTMD 196 (832)
Q Consensus 152 ----~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~~ 196 (832)
.|+.....++...|...--+.-..=+++.. .+.++|..|.+.|.
T Consensus 176 r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~-tk~~~v~~Lr~LI~ 223 (279)
T 3qwe_A 176 RRSREEAQAKAQEAEALYQACVREANARQQDLEI-AKQRIVSHVRKLVF 223 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence 344456667777776666666666666643 34566666655553
No 264
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=66.88 E-value=14 Score=43.83 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=31.0
Q ss_pred cceEEEecCC-----ceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 394 RFCFRIISPT-----KNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 394 ~~~F~I~t~~-----rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
..||.|+... +..+|.|.|+++.+.|+..|+..+....
T Consensus 103 ~r~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~~~~~ 145 (816)
T 3qr0_A 103 DKCVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYAYNLL 145 (816)
T ss_dssp HHEEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHHTCHH
T ss_pred ccEEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999864 3459999999999999999998875544
No 265
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=66.87 E-value=99 Score=30.36 Aligned_cols=24 Identities=4% Similarity=-0.058 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 20 EESAEVLRERSLKFYKGCRKYTEG 43 (832)
Q Consensus 20 E~~i~~l~~~l~kl~k~~~~~~~~ 43 (832)
..+.+.++..++.+-+.++.+...
T Consensus 36 D~~fe~~~~~f~~~e~~~~~l~k~ 59 (244)
T 1uru_A 36 DEIFDDHLNNFNRQQASANRLQKE 59 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777766665
No 266
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=61.03 E-value=1.3e+02 Score=31.63 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003309 12 FRKQIQGLEESAEVLRERSLKFYKGCRKYTE 42 (832)
Q Consensus 12 FRa~i~~~E~~i~~l~~~l~kl~k~~~~~~~ 42 (832)
.|.+|...| ..++..+++|......+.+
T Consensus 54 Lqg~Ldk~e---r~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 54 MKGLIDEVD---QDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred HHHHHHHhh---hhHHHHHHHHHHHHHHHHH
Confidence 344444443 3334444444444443333
No 267
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=58.96 E-value=17 Score=43.56 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=31.7
Q ss_pred cceEEEecCC-----ceEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 003309 394 RFCFRIISPT-----KNYTLQAESALDQMDWIEKITGVIASLL 431 (832)
Q Consensus 394 ~~~F~I~t~~-----rt~~lqA~s~~e~~~Wi~ai~~~i~~~~ 431 (832)
..||.|+... ++++|.|.|+++.+.|+..|+..+...+
T Consensus 100 ~r~fTIvyg~d~~n~~~LdLVA~s~e~a~~W~~gL~~L~~~~~ 142 (885)
T 3ohm_B 100 EKLMTVVSGPDPVNTVFLNFMAVQDDTAKVWSEELFKLAMNIL 142 (885)
T ss_dssp TTEEEEEECSSGGGCEEEEEEESSSSHHHHHHHHHHHHHHCHH
T ss_pred ccEEEEEECCCCccceEEEEEeCChHHHHHHHHHHHHHHhhhh
Confidence 4689998754 3699999999999999999998776554
No 268
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=58.81 E-value=2.8 Score=33.24 Aligned_cols=36 Identities=19% Similarity=0.528 Sum_probs=28.7
Q ss_pred CCccccCCCC-CCCeee--cccceeecccchhhhhccCCc
Q 003309 512 NDRCADCGAP-EPDWAS--LNLGVLVCIECSGVHRNLGVH 548 (832)
Q Consensus 512 n~~c~dc~~~-~p~w~s--~n~g~~~c~~Csg~hr~lg~~ 548 (832)
...|.+|+.. -|.|-. -.-| +||-.|.=..|..|++
T Consensus 8 ~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~ 46 (71)
T 2kae_A 8 SFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKT 46 (71)
T ss_dssp CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSC
T ss_pred CCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCC
Confidence 4689999996 589998 6778 8999997777765543
No 269
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=57.53 E-value=1.5e+02 Score=29.24 Aligned_cols=22 Identities=9% Similarity=-0.082 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 003309 22 SAEVLRERSLKFYKGCRKYTEG 43 (832)
Q Consensus 22 ~i~~l~~~l~kl~k~~~~~~~~ 43 (832)
+.+.++..+..+-+.++.+...
T Consensus 53 ~Fe~~~~~f~~~e~~~~~l~k~ 74 (251)
T 2fic_A 53 QFEQCVQNFNKQLTEGTRLQKD 74 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777766665
No 270
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=54.81 E-value=2.2e+02 Score=30.32 Aligned_cols=25 Identities=4% Similarity=-0.025 Sum_probs=12.5
Q ss_pred HHHHHHhHhhhHHHHHHHHHHHHHh
Q 003309 105 DRLLQYVNIDLHEVKEARKCFDKAS 129 (832)
Q Consensus 105 ~pL~~f~~~di~~~ke~rk~fek~~ 129 (832)
.+|...++..+..+...|.-|....
T Consensus 278 ~~L~E~L~~Y~~ll~s~Kdll~~R~ 302 (386)
T 4akv_A 278 FQMLDTLSLYQGLLSNFPDIIHLQK 302 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554443
No 271
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=54.74 E-value=7.9 Score=38.89 Aligned_cols=49 Identities=29% Similarity=0.671 Sum_probs=37.3
Q ss_pred CCCCccccCCCCCCCeeecccceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchH
Q 003309 510 CGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNA 576 (832)
Q Consensus 510 ~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~ 576 (832)
|.-..|+.||.+++.|.|...|.++|..|...+ .++++.+.+|+.+-+.
T Consensus 148 p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~------------------~l~~~~l~~l~~l~~~ 196 (244)
T 1u5k_A 148 PQTARCARCGAPDPEHPDPLGGQLLCSKCAALP------------------PYPPAVLDFLRHAVRR 196 (244)
T ss_dssp CCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC------------------CCCHHHHHHHHHTTTS
T ss_pred CCcCccccCCCCCCCcEecccCEEECcccCCCC------------------CCCHHHHHHHHHHHhC
Confidence 555789999999778899999999999995321 2467888887766543
No 272
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=50.72 E-value=7.4 Score=34.13 Aligned_cols=36 Identities=31% Similarity=0.713 Sum_probs=29.0
Q ss_pred CCccccCCCC-CCCeeecccceeecccchhhhhccCC
Q 003309 512 NDRCADCGAP-EPDWASLNLGVLVCIECSGVHRNLGV 547 (832)
Q Consensus 512 n~~c~dc~~~-~p~w~s~n~g~~~c~~Csg~hr~lg~ 547 (832)
...|++||+. -|.|-.-.-|-++|-.|.-.++.-|.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 3689999986 59999999999999999766664443
No 273
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=49.40 E-value=26 Score=29.58 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=25.7
Q ss_pred CCChHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 003309 7 DDSPMFRKQIQ-GLEESAEVLRERSLKFYK 35 (832)
Q Consensus 7 ~DSP~FRa~i~-~~E~~i~~l~~~l~kl~k 35 (832)
.|+|.+|..|. .+...+..|.+.++.+..
T Consensus 33 rD~~~LR~~l~~~l~~~~~~L~k~~~~l~~ 62 (97)
T 1hs7_A 33 RDSKELRYKIETELIPNCTSVRDKIESNIL 62 (97)
T ss_dssp SCCHHHHHHHHHTHHHHHHHHHHHHHHSTH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 69999999999 999999999999885554
No 274
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=49.10 E-value=7.3 Score=32.52 Aligned_cols=30 Identities=27% Similarity=0.646 Sum_probs=24.8
Q ss_pred CCCccccCCCCCCCeeecccceeecccchhhhh
Q 003309 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHR 543 (832)
Q Consensus 511 ~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr 543 (832)
|+..|.-||.+. ...+||++.|..|.++-|
T Consensus 1 g~~~C~VCg~~a---~g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEA---SGCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcC---cccccCCccchhHhHHhh
Confidence 577899999764 356899999999999887
No 275
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=47.17 E-value=2.9e+02 Score=29.51 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh----HHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhH
Q 003309 78 MTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDL----HEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAI 153 (832)
Q Consensus 78 l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di----~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e 153 (832)
+.++...+++....+.... ..-..+..++.+-++.+| +.|...-+..+.++.+|+.+ .+=..+.| -..+...
T Consensus 100 ~~~l~~~~ke~~~~rK~~~-~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~-~k~ke~eK--~~~k~~k 175 (406)
T 4dyl_A 100 LSKLSLLIRERQQLRKTYS-EQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEA-SKDKDRDK--AKDKYVR 175 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC----------CH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccCchHHH--HHHHHHH
Confidence 3445555555544444333 223344455555553233 45667777777777777655 22111222 2234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHH
Q 003309 154 LEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTM 195 (832)
Q Consensus 154 ~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~ 195 (832)
...++..++..|..+ +...|..+.+...+.+..+++.+
T Consensus 176 ~~~~~~~a~neY~~~----l~~~N~~~~~yy~~~lp~~~d~l 213 (406)
T 4dyl_A 176 SLWKLFAHHNRYVLG----VRAAQLHHQHHHQLLLPGLLRSL 213 (406)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHH
Confidence 666777888888533 44445555554444444444433
No 276
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=46.68 E-value=77 Score=22.67 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=31.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 207 ELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEY 244 (832)
Q Consensus 207 ~~~~~l~~~~~~l~~~~~~~r~~~~~~~~~l~~~~~~~ 244 (832)
+-.+.++..++.+++.+.....+++..+.++++++..+
T Consensus 5 ekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888999999999999999998888888887654
No 277
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=45.53 E-value=10 Score=31.14 Aligned_cols=31 Identities=23% Similarity=0.551 Sum_probs=26.0
Q ss_pred CCCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 511 ~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
....|.-||.+. ...+||++.|..|+++.|-
T Consensus 3 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYA---SGYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCC---CCeeeCccchHHhhhhhhh
Confidence 457899999764 3679999999999999984
No 278
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=43.74 E-value=8.8 Score=33.03 Aligned_cols=33 Identities=21% Similarity=0.515 Sum_probs=26.2
Q ss_pred cCCCCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 509 VCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 509 ~~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
.+.+..|.-||.+. ...+||++.|..|+++.|-
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 34567899999653 4679999999999999984
No 279
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=43.20 E-value=3.7e+02 Score=29.54 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 003309 164 AFEQARFSLVTALSNVEAK 182 (832)
Q Consensus 164 ~f~~~sld~~~~l~~~~~~ 182 (832)
.|.+.+-|+=.+|..|+.+
T Consensus 107 tynE~S~ELRRrIqyLKek 125 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 280
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=42.64 E-value=1.3e+02 Score=28.91 Aligned_cols=32 Identities=13% Similarity=0.311 Sum_probs=27.1
Q ss_pred ceEEEecC-CceEEEEeCCHHHHHHHHHHHHHH
Q 003309 395 FCFRIISP-TKNYTLQAESALDQMDWIEKITGV 426 (832)
Q Consensus 395 ~~F~I~t~-~rt~~lqA~s~~e~~~Wi~ai~~~ 426 (832)
..|.|+.. +.++.|.|.|+.+...|+..|+--
T Consensus 116 laFSii~~~~~~L~fvA~s~~~~~~W~DGL~~L 148 (203)
T 3a98_B 116 LAFSILYDSNCQLNFIAPDKHEYCIWTDGLNAL 148 (203)
T ss_dssp GEEEEEETTTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCceEEEecCCHHHHHHHHHHHHHH
Confidence 57998865 469999999999999999988743
No 281
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=41.85 E-value=2.3e+02 Score=26.74 Aligned_cols=125 Identities=16% Similarity=0.123 Sum_probs=67.7
Q ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003309 102 MLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEA 181 (832)
Q Consensus 102 ~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~ 181 (832)
.|.+.|..+.+.+|..-+|.-..--.+-++.|... ..+.+-..-........+ .-.+|+-++....+..
T Consensus 58 ~F~~QL~qL~~~~i~~Tre~v~d~l~YLkkLD~l~---~~Lq~h~~Lse~l~l~kq--------Ls~sLh~mC~~~pld~ 126 (204)
T 2jqq_A 58 KFMTQLDHLIKDDISNTQEIIKDVLEYLKKLDEIY---GSLRNHSQLTEALSLGKR--------LSKSLHEMCGIEPLEE 126 (204)
T ss_dssp HHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHH---HTCSSSSHHHHHHHHHHH--------HHHHHHHHHTSSCCCH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHH--------HHHHHHHHhCCCCCcH
Confidence 56667777888777665554443333333333322 223333222222222222 2345666666666666
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 182 KKRFEFLEAVSGTMDAHLRYFKQGYELLHQM-EPYINQVLTYAQQSRERSNYEQAALNERM 241 (832)
Q Consensus 182 ~~~~e~l~~l~~~~~a~~~ff~~g~~~~~~l-~~~~~~l~~~~~~~r~~~~~~~~~l~~~~ 241 (832)
...++++.++...++.-.+-|. .++++ .|+++.++..-+...+++.--.+.+-.+.
T Consensus 127 eLc~~l~~qL~~L~~~~~~ll~----~l~dl~Sp~l~h~RN~yq~i~q~Fqi~lk~LtdkC 183 (204)
T 2jqq_A 127 EICSGLIEQLYKLITASRRILE----SCADSNSPYIHHLRNDYQDLLQEFQISLKILTEKC 183 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666776666655444333332 23333 38999998888888877766555554443
No 282
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=39.71 E-value=11 Score=31.29 Aligned_cols=31 Identities=19% Similarity=0.576 Sum_probs=25.7
Q ss_pred CCCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 511 ~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
.+..|.-||.+.- ..+||++.|..|.++.|-
T Consensus 6 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 6 SGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp SSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 4568999997643 568999999999999984
No 283
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=39.50 E-value=3.6e+02 Score=28.34 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003309 17 QGLEESAEVLRERSLKFYKGCRKYTE 42 (832)
Q Consensus 17 ~~~E~~i~~l~~~l~kl~k~~~~~~~ 42 (832)
...++.++.++..+.++-..++.+..
T Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~l~~ 189 (366)
T 3dyt_A 164 VEIEQKCEAVGKFTKAMDDGVKELLT 189 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444443
No 284
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=38.62 E-value=18 Score=31.70 Aligned_cols=39 Identities=21% Similarity=0.421 Sum_probs=32.4
Q ss_pred CCCCccccCCCC-CCCeeecccceeecccchhhhhccCCc
Q 003309 510 CGNDRCADCGAP-EPDWASLNLGVLVCIECSGVHRNLGVH 548 (832)
Q Consensus 510 ~~n~~c~dc~~~-~p~w~s~n~g~~~c~~Csg~hr~lg~~ 548 (832)
.....|++|+.. -|.|-.-..|..||-.|.-..+.-|++
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 356899999996 599999999999999997777665554
No 285
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=38.54 E-value=7.7 Score=35.81 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=23.5
Q ss_pred CCCCccccCCCCCCC-eeecccceeecccchhhhh
Q 003309 510 CGNDRCADCGAPEPD-WASLNLGVLVCIECSGVHR 543 (832)
Q Consensus 510 ~~n~~c~dc~~~~p~-w~s~n~g~~~c~~Csg~hr 543 (832)
..-..|.+||.+-|. ---..=++..|+.|...|-
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 456899999997651 1112236889999998764
No 286
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=38.43 E-value=13 Score=32.72 Aligned_cols=31 Identities=26% Similarity=0.679 Sum_probs=25.9
Q ss_pred CCCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 511 ~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
.+..|.-||.+. ...+||++.|..|+++.|-
T Consensus 7 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRA---SGYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcC---CcceECchhHHhhHHhhhh
Confidence 356899999764 3679999999999999984
No 287
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=38.16 E-value=11 Score=32.32 Aligned_cols=29 Identities=24% Similarity=0.708 Sum_probs=24.2
Q ss_pred CccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 513 DRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 513 ~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
..|.-||.+. ...+||++.|..|+++.|-
T Consensus 2 ~~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKA---TGYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBC---CSEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcC---cCeecCcccHHHhhhhhee
Confidence 5699999754 3568999999999999984
No 288
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=37.53 E-value=13 Score=31.13 Aligned_cols=31 Identities=26% Similarity=0.687 Sum_probs=25.2
Q ss_pred CCCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 511 ~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
....|.-||.+. ...+||++.|..|.++.|-
T Consensus 9 ~~~~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRA---SGKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCC---cCeecCcchhHHHHHHHHh
Confidence 346899999764 3679999999999999884
No 289
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=36.65 E-value=3.4e+02 Score=27.21 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHH
Q 003309 115 LHEVKEARKCFDKASLLYDQAREK 138 (832)
Q Consensus 115 i~~~ke~rk~fek~~~~yd~al~k 138 (832)
.+.+..+|++|+....+++.+..+
T Consensus 134 ~~~l~kaKk~Y~~~c~e~~~a~~~ 157 (290)
T 3i2w_A 134 LAKVEKAKADYHSACKTERSATNQ 157 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665555554443
No 290
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=36.56 E-value=4.6e+02 Score=28.76 Aligned_cols=35 Identities=9% Similarity=0.204 Sum_probs=27.1
Q ss_pred ChHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 9 SPMFRKQIQ------GLEESAEVLRERSLKFYKGCRKYTEG 43 (832)
Q Consensus 9 SP~FRa~i~------~~E~~i~~l~~~l~kl~k~~~~~~~~ 43 (832)
=|.++..|+ .|++.+..++..+..+..+|+.+.++
T Consensus 172 ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S 212 (483)
T 2j1d_G 172 INHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRS 212 (483)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355554444 48899999999999999999987764
No 291
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=36.27 E-value=3.3e+02 Score=26.88 Aligned_cols=92 Identities=11% Similarity=0.156 Sum_probs=49.2
Q ss_pred hHhhhHHHHHHHHHHHHHhHHH---HHHHHHHHhcccCCchhHHh----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 003309 111 VNIDLHEVKEARKCFDKASLLY---DQAREKFLSLRKGTKTDVAA----ILEEELHSARSAFEQARFSLVTALSNVEAKK 183 (832)
Q Consensus 111 ~~~di~~~ke~rk~fek~~~~y---d~al~k~~~~~k~k~~~~~~----e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~ 183 (832)
.+.-|.|+.+....|...+..- +..+--|-+...+ .++++ ..+..|..+...+..+.-+|-. |
T Consensus 115 ~d~~l~Pl~~l~~~f~~i~k~I~KR~~KllDYD~~~~k--~~kL~~K~~kd~~kl~kae~el~~Ak~~Ye~-l------- 184 (243)
T 4a3a_A 115 VDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHH--LEALQSSKRKDESRISKAEEEFQKAQKVFEE-F------- 184 (243)
T ss_dssp HHTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH-H-------
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHhcchHHHHHHHHHH--HHHHHhcccccHHHHHHHHHHHHHHHHHHHH-H-------
Confidence 4455677777777776554421 1222223222111 11111 1234566677777666544433 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003309 184 RFEFLEAVSGTMDAHLRYFKQGYELLHQM 212 (832)
Q Consensus 184 ~~e~l~~l~~~~~a~~~ff~~g~~~~~~l 212 (832)
.-.+++.|=.|+.+-..||..+++.+-.+
T Consensus 185 N~~L~eELP~l~~~r~~~~~~~~~s~i~~ 213 (243)
T 4a3a_A 185 NVDLQEELPSLWSRRVGFYVNTFKNVSSL 213 (243)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22567777778888888888776666443
No 292
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=34.89 E-value=1.2e+02 Score=23.98 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=33.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003309 207 ELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQID 249 (832)
Q Consensus 207 ~~~~~l~~~~~~l~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~ 249 (832)
+-.+.|+..++.|++.+..+..+|+..+.++++++..+-.++.
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457788889999999999999999888888888876554443
No 293
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=34.85 E-value=13 Score=31.63 Aligned_cols=29 Identities=31% Similarity=0.728 Sum_probs=23.9
Q ss_pred CccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 513 DRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 513 ~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
..|.-||.+.- ..+||++.|..|.++.|-
T Consensus 4 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 4 HICAICGDRSS---GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp -CBTTTBSCCC---BCCTTSCBCSHHHHHHHH
T ss_pred CCCceeCCCCc---ceeeCccchHHHHHHHHh
Confidence 57999997643 578999999999999984
No 294
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=34.84 E-value=13 Score=32.46 Aligned_cols=32 Identities=25% Similarity=0.660 Sum_probs=24.8
Q ss_pred CCCCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 510 CGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 510 ~~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
+.+..|.-||.+. ...+||++.|..|.++.|-
T Consensus 7 ~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 7 DLEELCPVCGDKV---SGYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp ---CBCTTTCCBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCcEeCCCC---cceeeCcccHHHHHHHHhh
Confidence 3457899999653 3679999999999999984
No 295
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=33.38 E-value=16 Score=30.67 Aligned_cols=30 Identities=33% Similarity=0.731 Sum_probs=24.6
Q ss_pred CCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 512 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 512 n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
...|.-||.+. ...+||++.|..|.++.|-
T Consensus 7 ~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (94)
T 1a6y_A 7 VLLCKVCGDVA---SGFHYGVLACEGCKGFFRR 36 (94)
T ss_dssp -CBCTTTSSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCcCcEeCCCC---cceEeCccchhhhhhehhe
Confidence 35799999764 3678999999999999884
No 296
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=32.41 E-value=12 Score=31.66 Aligned_cols=30 Identities=23% Similarity=0.615 Sum_probs=25.0
Q ss_pred CCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 512 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 512 n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
...|.-||.+. ...+||++.|..|.++.|-
T Consensus 4 ~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 4 KRLCLVCGDIA---SGYHYGVASCEACKAFFKR 33 (98)
T ss_dssp CCEETTTTEEC---SEESSSSEECHHHHHHHHH
T ss_pred CCCCcEeCCCC---cCeeeCccchhhhhhhhee
Confidence 35799999764 3679999999999999984
No 297
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=32.38 E-value=11 Score=32.74 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=24.0
Q ss_pred CCCccccCCCCCCCee-ecccceeecccchhh
Q 003309 511 GNDRCADCGAPEPDWA-SLNLGVLVCIECSGV 541 (832)
Q Consensus 511 ~n~~c~dc~~~~p~w~-s~n~g~~~c~~Csg~ 541 (832)
+...|.+||...-+|. .-+||+.||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 4567999998754333 569999999999765
No 298
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=32.12 E-value=18 Score=29.90 Aligned_cols=29 Identities=28% Similarity=0.654 Sum_probs=23.7
Q ss_pred CccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 513 DRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 513 ~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
..|.-||.+.- ..+||++.|..|+++.|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHHH
Confidence 46999997643 568999999999999984
No 299
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=31.77 E-value=21 Score=29.65 Aligned_cols=28 Identities=36% Similarity=0.829 Sum_probs=23.3
Q ss_pred ccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 514 RCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 514 ~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
.|.-||.+.- ..+||++.|..|.++.|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888997543 579999999999999984
No 300
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=31.56 E-value=3.6e+02 Score=25.91 Aligned_cols=59 Identities=15% Similarity=0.292 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 003309 79 TKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNIDLHEVKEARKCFDKASLLYDQAREKFLS 141 (832)
Q Consensus 79 ~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~rk~fek~~~~yd~al~k~~~ 141 (832)
..|-+.+++|.+.-.+|++.++..+..-... .-+.+...||.|-++++.|-..|..|-+
T Consensus 118 ~~FL~tIKeIAsaIKklLDAvn~v~~~~~~~----~k~~le~~KreFVkySKrFS~TLKeYFk 176 (213)
T 3ajm_A 118 VRFLQTIKDIASAIKELLDTVNNVFKKYQYQ----NRRALEHQKKEFVKYSKSFSDTLKTYFK 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHHHHHhhHhhHHHHHHHh
Confidence 5677777888887777776655443221111 2355678888899999998877777755
No 301
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=31.40 E-value=25 Score=26.52 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=18.5
Q ss_pred CccccCCCCCCCeeecccceeecccch
Q 003309 513 DRCADCGAPEPDWASLNLGVLVCIECS 539 (832)
Q Consensus 513 ~~c~dc~~~~p~w~s~n~g~~~c~~Cs 539 (832)
..|.+||.....+ .-.-|.++|..|-
T Consensus 12 ~~Cp~C~~~~lv~-D~~~ge~vC~~CG 37 (58)
T 1dl6_A 12 VTCPNHPDAILVE-DYRAGDMICPECG 37 (58)
T ss_dssp CSBTTBSSSCCEE-CSSSCCEECTTTC
T ss_pred ccCcCCCCCceeE-eCCCCeEEeCCCC
Confidence 4799999865322 2356899999993
No 302
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=31.36 E-value=12 Score=30.85 Aligned_cols=31 Identities=29% Similarity=0.678 Sum_probs=25.4
Q ss_pred CCCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 511 ~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
.+..|.-||.+.- ..+||++.|..|++..|-
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 4567999997543 568999999999999984
No 303
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=31.16 E-value=15 Score=31.92 Aligned_cols=29 Identities=24% Similarity=0.730 Sum_probs=24.6
Q ss_pred CccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 513 DRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 513 ~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
..|.-||.+.- ..+||++.|..|.++.|-
T Consensus 7 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 7 RICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEeCCCCC---ceEeCchhHhhhhhhhee
Confidence 57999997643 568999999999999984
No 304
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=30.57 E-value=3.2e+02 Score=25.81 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=45.5
Q ss_pred HHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-hh-hhchhhHHHHHHHHHHH-------HHHHHHHHHH
Q 003309 137 EKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSN-VE-AKKRFEFLEAVSGTMDA-------HLRYFKQGYE 207 (832)
Q Consensus 137 ~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~-~~-~~~~~e~l~~l~~~~~a-------~~~ff~~g~~ 207 (832)
.++..+-+.+.|+.+++ ++.|-.....|.+...+++.+... +. .+..+++|..|+..+.- ...-++..|+
T Consensus 36 a~L~eLirs~~PeDL~~-AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~ 114 (186)
T 1oxz_A 36 KMLARLLKSSHPEDLRA-ANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQ 114 (186)
T ss_dssp HHHHHHHSCCSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHH
T ss_pred HHHHHHhcCCChhhHHH-HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHH
Confidence 35667778888887776 456666666677777777654433 21 23344556665544311 2233344444
Q ss_pred HHhhhHHHHHHHH
Q 003309 208 LLHQMEPYINQVL 220 (832)
Q Consensus 208 ~~~~l~~~~~~l~ 220 (832)
.++.++|-+..+.
T Consensus 115 ~Ck~~qp~i~~Li 127 (186)
T 1oxz_A 115 RCERMRPTLFRLA 127 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 305
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.52 E-value=1.3e+03 Score=31.92 Aligned_cols=63 Identities=13% Similarity=0.032 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----h-HHHHHHHHHHHHHhHHHHHHHHH
Q 003309 76 PVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQYVNID-----L-HEVKEARKCFDKASLLYDQAREK 138 (832)
Q Consensus 76 ~~l~~f~~~l~ei~~~~~~l~~~~~~~~~~pL~~f~~~d-----i-~~~ke~rk~fek~~~~yd~al~k 138 (832)
..+..|-..++.+...+..-+......+..-|+++.... + +++.+.+...++.+.+=+.++.+
T Consensus 1895 ~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~ 1963 (3245)
T 3vkg_A 1895 RHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQ 1963 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556555555555544444445555566666653321 1 13334444444445444444444
No 306
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=29.19 E-value=4.1e+02 Score=28.96 Aligned_cols=36 Identities=14% Similarity=0.379 Sum_probs=27.5
Q ss_pred CChHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 8 DSPMFRKQIQ------GLEESAEVLRERSLKFYKGCRKYTEG 43 (832)
Q Consensus 8 DSP~FRa~i~------~~E~~i~~l~~~l~kl~k~~~~~~~~ 43 (832)
+=|.++..|+ .|++.+..++..|..+..+|+.+.++
T Consensus 160 ~Ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S 201 (457)
T 3obv_E 160 TVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKS 201 (457)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3466655554 47889999999999999999887764
No 307
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=28.90 E-value=34 Score=31.91 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=32.8
Q ss_pred cceeecccchhhhhccCCccceeeecccCCCCCCHHHHHHHHHhchHHHHHHHHhhhcc
Q 003309 530 LGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQS 588 (832)
Q Consensus 530 ~g~~~c~~Csg~hr~lg~~~s~vrsl~ld~~~~~~~~~~~~~~~gn~~~n~~~e~~~~~ 588 (832)
+|++.|..|..-+ .|+++++.+++.+++..+-++--+.+-.
T Consensus 119 ~GlL~~~~~~~~r------------------~w~~~ei~ll~~lA~ql~iAi~qa~l~~ 159 (171)
T 4glq_A 119 FGLLIAHQASEPR------------------QWQEIEIDQFSELASTGSLVLERLHFLE 159 (171)
T ss_dssp EEEEEEEEESSCC------------------CCCHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEEEEEEeCCCCC------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999996533 6999999999999999999987776654
No 308
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=28.46 E-value=6 Score=34.13 Aligned_cols=34 Identities=35% Similarity=0.725 Sum_probs=23.4
Q ss_pred CCCccccCCCCCCC-eeecccceeecccchhhhhc
Q 003309 511 GNDRCADCGAPEPD-WASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 511 ~n~~c~dc~~~~p~-w~s~n~g~~~c~~Csg~hr~ 544 (832)
.-..|.+||.+-|. ---..=++..|++|...+-.
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E~ 89 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 89 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHHH
Confidence 35799999997651 11122367899999987654
No 309
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=27.15 E-value=19 Score=29.03 Aligned_cols=28 Identities=32% Similarity=0.692 Sum_probs=23.1
Q ss_pred ccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 514 RCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 514 ~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
.|.-||.+.. ..+||++.|..|.+..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFRR 29 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeeeE
Confidence 4888996543 568999999999999984
No 310
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=26.76 E-value=3.5e+02 Score=25.72 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHhhhHHHHHHHHHHHHHhHHHH
Q 003309 76 PVMTKFTIALREIGTYKEVLRSQVEHM-LNDRLLQYVNIDLHEVKEARKCFDKASLLYD 133 (832)
Q Consensus 76 ~~l~~f~~~l~ei~~~~~~l~~~~~~~-~~~pL~~f~~~di~~~ke~rk~fek~~~~yd 133 (832)
..+.++..++.+...--..+..++... --..+. ..|+.|++.|+.|...+.+.+
T Consensus 128 ~L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~----~Fl~~y~~~R~~yH~RreK~~ 182 (192)
T 2p22_C 128 ALKKKLEQNTKKLDEESSQLETTTRSIDSADDLD----QFIKNYLDIRTQYHLRREKLA 182 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccchHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 456778888777776655555433110 011233 334567888888877776654
No 311
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=26.22 E-value=2.7e+02 Score=25.55 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=47.1
Q ss_pred HHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-hh-hhchhhHHHHHHHHHHH-------HHHHHHHHHH
Q 003309 137 EKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSN-VE-AKKRFEFLEAVSGTMDA-------HLRYFKQGYE 207 (832)
Q Consensus 137 ~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~-~~-~~~~~e~l~~l~~~~~a-------~~~ff~~g~~ 207 (832)
.++..+-+.+.|+.+++ ++.|-.....|.+...+++.+... +. .+..+++|..|+..+.- ...-++..++
T Consensus 20 ~~L~~Lirs~~PeDL~~-AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~ 98 (158)
T 1naf_A 20 KMLARLLKSSHPEDLRA-ANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQ 98 (158)
T ss_dssp HHHHHHHSSCSTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHH
T ss_pred HHHHHHHhcCChhhHHH-HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHH
Confidence 35667777888888776 456666666777777777664433 21 23445566666554411 1133344444
Q ss_pred HHhhhHHHHHHHH
Q 003309 208 LLHQMEPYINQVL 220 (832)
Q Consensus 208 ~~~~l~~~~~~l~ 220 (832)
.++.++|-+..+.
T Consensus 99 ~Ck~~qp~i~~Li 111 (158)
T 1naf_A 99 RCERMRPTLFRLA 111 (158)
T ss_dssp HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555544
No 312
>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae, orthobunyavirus, aedes triseriatu hydrolase; 2.20A {Bunyavirus la crosse} PDB: 2xi7_A*
Probab=24.65 E-value=1.2e+02 Score=28.08 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcccCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHHHHHHHHH
Q 003309 130 LLYDQAREKFLSLRKGTKTDVAAILEEELHSARSAFEQARFSLVTALSNVEAKKRFEFLEAVSGTM 195 (832)
Q Consensus 130 ~~yd~al~k~~~~~k~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~~~~~~~~e~l~~l~~~~ 195 (832)
..|++.+.|-+. .+.++...+...+|..+|+.|... +++..|+- +.|.++.+-+.+++|+
T Consensus 5 ~~~~q~~~RI~~---~~~~~~AKDI~~Dll~~RHDyFGr--e~c~~L~i-eyRnDV~~~dilld~l 64 (184)
T 2xi5_A 5 QEYQQFLARINT---ARDACVAKDIDVDLLMARHDYFGR--ELCKSLNI-EYRNDVPFIDIILDIR 64 (184)
T ss_dssp HHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHHHHH--HHHHHHTC-CCCSSCCHHHHHHHHS
T ss_pred HHHHHHHHHHHc---cCChhHHHhHHHHHHHHHhHHHHH--HHHHHcCc-hhccCCcHHHHHHHHc
Confidence 456666666443 457888888899999999999665 55555554 8999988877776654
No 313
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.06 E-value=7e+02 Score=26.84 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 003309 226 SRERSNYEQAALNERMQEYKRQIDR 250 (832)
Q Consensus 226 ~r~~~~~~~~~l~~~~~~~~~~~~~ 250 (832)
..++.+.+..++..++++...++++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666665555543
No 314
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=23.23 E-value=1.4e+02 Score=26.11 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=29.0
Q ss_pred cceEEEecC------CceEEEEeCCHHHHHHHHHHHHHHHHH
Q 003309 394 RFCFRIISP------TKNYTLQAESALDQMDWIEKITGVIAS 429 (832)
Q Consensus 394 ~~~F~I~t~------~rt~~lqA~s~~e~~~Wi~ai~~~i~~ 429 (832)
+.-|.|+-. .+.|.|.|.|.+|..+=|.-|+..++.
T Consensus 74 P~~FKivV~k~~~~e~KrYdfEA~s~~ea~EIV~~ik~~~~~ 115 (121)
T 3ulb_A 74 PEHFKIFVRREGQDDIKRYYFEAVSGQECTEIVTRLQNLLSA 115 (121)
T ss_dssp TTEEEEEECCTTCSSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEccCCCCcceeEEEeCCHHHHHHHHHHHHHHHHH
Confidence 345777542 389999999999999999999988863
No 315
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=23.00 E-value=4.4e+02 Score=24.56 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=26.2
Q ss_pred CCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003309 145 GTKTDVAAILEEELHSARSAFEQARFSLVTALSN 178 (832)
Q Consensus 145 ~k~~~~~~e~~~~l~~~r~~f~~~sld~~~~l~~ 178 (832)
+-++.++++...++.+.|.......+++-.+|..
T Consensus 109 ~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 109 SPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366677888888999998888888888776654
No 316
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=22.80 E-value=6.4e+02 Score=25.96 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003309 157 ELHSARSAFEQARFSLVTALSNVEAK 182 (832)
Q Consensus 157 ~l~~~r~~f~~~sld~~~~l~~~~~~ 182 (832)
.+...|..|....-+.+..+++++..
T Consensus 221 ~~n~~~~~~~~~~~~~~~~~Q~lee~ 246 (350)
T 3aco_A 221 ELDQGTPQYMENMEQVFEQCQQFEEK 246 (350)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777776777777776654
No 317
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=22.36 E-value=7.4e+02 Score=26.51 Aligned_cols=28 Identities=4% Similarity=0.097 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003309 76 PVMTKFTIALREIGTYKEVLRSQVEHML 103 (832)
Q Consensus 76 ~~l~~f~~~l~ei~~~~~~l~~~~~~~~ 103 (832)
+.+.....--.+|..+..+|-++.+.+.
T Consensus 194 ~ll~el~~le~elA~~L~SLT~HyDqC~ 221 (413)
T 4hpq_C 194 EFTNEADQLEQELADFLKSFTDHFDKCS 221 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444666666666655544444
No 318
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=21.79 E-value=36 Score=29.77 Aligned_cols=30 Identities=23% Similarity=0.531 Sum_probs=23.9
Q ss_pred CCCccccCCCCCCCeeecccceeecccchhhhh
Q 003309 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHR 543 (832)
Q Consensus 511 ~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr 543 (832)
....|.-||.+. ...+||++.|..|.++-|
T Consensus 28 ~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 28 PPKLCLVCSDEA---SGCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp --CBCTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred CCCcCCcCCCcC---cccccCCcccchhhhhhh
Confidence 456799999764 356899999999999887
No 319
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=21.48 E-value=5.2e+02 Score=26.76 Aligned_cols=35 Identities=14% Similarity=0.368 Sum_probs=27.4
Q ss_pred ChHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003309 9 SPMFRKQI------QGLEESAEVLRERSLKFYKGCRKYTEG 43 (832)
Q Consensus 9 SP~FRa~i------~~~E~~i~~l~~~l~kl~k~~~~~~~~ 43 (832)
=|.++..| ..|++.++.++..+..+..+|+.+.++
T Consensus 90 ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S 130 (340)
T 1v9d_A 90 VPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKS 130 (340)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35565554 358889999999999999999987764
No 320
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.27 E-value=27 Score=28.90 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=22.8
Q ss_pred HHccCCCCccccCCCCC-------CC----------eeecccceeecccch
Q 003309 506 LRRVCGNDRCADCGAPE-------PD----------WASLNLGVLVCIECS 539 (832)
Q Consensus 506 ~~~~~~n~~c~dc~~~~-------p~----------w~s~n~g~~~c~~Cs 539 (832)
.++.+.-..|+|||.+- |. -++--|| .+|..|.
T Consensus 27 ~KK~~~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cv 76 (89)
T 3j21_d 27 ERKKPKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCM 76 (89)
T ss_dssp CCCCCCCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHH
T ss_pred ecccCCCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHH
Confidence 34555666899999742 21 4566799 9999994
No 321
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=20.65 E-value=35 Score=37.19 Aligned_cols=31 Identities=29% Similarity=0.660 Sum_probs=25.3
Q ss_pred CCCccccCCCCCCCeeecccceeecccchhhhhc
Q 003309 511 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 544 (832)
Q Consensus 511 ~n~~c~dc~~~~p~w~s~n~g~~~c~~Csg~hr~ 544 (832)
.+..|.-||.+.- ..+||+..|..|.++-|-
T Consensus 49 ~~~~C~vC~~~~~---g~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 49 MAIECRVCGDKAS---GFHYGVHACEGCKGFFRR 79 (419)
T ss_dssp -CCCCSSSCSCCC---SBCSSSBCCHHHHHHHHH
T ss_pred CCCcCeECCCcCC---CCccCcccchhhhHHHcc
Confidence 4567999998654 468999999999999874
Done!