Your job contains 1 sequence.
>003311
MRLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKHVDGIEPLKDSEDDLLDLDASEN
GTPRDLHPEEDDIIDSDHNDDSGDLLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQL
EGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI
NEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIY
MIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVEN
FEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCD
MSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII
RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERG
TLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQK
KEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTS
SLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNK
EEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYL
PSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSV
EKSEHKGVQGSGLNGHILTWNTHRKKRSSYVVQTSSSDSRGQNSNGRGNGWS
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003311
(832 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150270 - symbol:CHR23 "chromatin remodeling 2... 2682 1.8e-280 2
UNIPROTKB|K7GT64 - symbol:LOC100622433 "Uncharacterized p... 925 9.0e-178 3
UNIPROTKB|A5PKK5 - symbol:SMARCA2 "SMARCA2 protein" speci... 932 2.8e-177 3
UNIPROTKB|E2RKP4 - symbol:SMARCA2 "Uncharacterized protei... 932 2.8e-177 3
UNIPROTKB|F1SJG5 - symbol:SMARCA2 "Uncharacterized protei... 932 2.8e-177 3
UNIPROTKB|E9PTG1 - symbol:Smarca2 "Protein Smarca2" speci... 932 3.3e-177 3
UNIPROTKB|J9P5P2 - symbol:SMARCA2 "Uncharacterized protei... 932 3.4e-177 3
UNIPROTKB|P51531 - symbol:SMARCA2 "Probable global transc... 932 3.9e-177 3
MGI|MGI:99603 - symbol:Smarca2 "SWI/SNF related, matrix a... 932 5.6e-177 3
UNIPROTKB|D4AA07 - symbol:Smarca4 "Transcription activato... 925 1.3e-176 3
ZFIN|ZDB-GENE-030605-1 - symbol:smarca4 "SWI/SNF related,... 929 1.6e-176 2
RGD|1302988 - symbol:Smarca2 "SWI/SNF related, matrix ass... 925 2.0e-176 3
MGI|MGI:88192 - symbol:Smarca4 "SWI/SNF related, matrix a... 925 2.5e-176 2
RGD|621728 - symbol:Smarca4 "SWI/SNF related, matrix asso... 925 2.5e-176 2
UNIPROTKB|G3V790 - symbol:Smarca4 "SWI/SNF related, matri... 925 2.5e-176 2
UNIPROTKB|E2RJ89 - symbol:SMARCA4 "Uncharacterized protei... 925 3.2e-176 2
UNIPROTKB|A7Z019 - symbol:SMARCA4 "Transcription activato... 925 6.3e-176 2
UNIPROTKB|E1C2F7 - symbol:E1C2F7 "Uncharacterized protein... 932 8.3e-176 2
UNIPROTKB|D4A4J2 - symbol:Smarca2 "Protein Smarca2" speci... 932 3.4e-175 2
UNIPROTKB|P51532 - symbol:SMARCA4 "Transcription activato... 925 6.9e-175 3
UNIPROTKB|F1M6Y4 - symbol:Smarca4 "Transcription activato... 925 9.7e-175 2
UNIPROTKB|F1S594 - symbol:LOC100622433 "Uncharacterized p... 882 2.0e-173 2
UNIPROTKB|Q9HBD4 - symbol:SMARCA4 "SMARCA4 isoform 2" spe... 925 1.8e-172 3
ZFIN|ZDB-GENE-030131-5964 - symbol:smarca2 "SWI/SNF relat... 918 8.9e-172 2
CGD|CAL0003962 - symbol:orf19.239 species:5476 "Candida a... 1635 4.8e-170 2
DICTYBASE|DDB_G0271052 - symbol:snf2b "SNF2-related prote... 1657 5.7e-169 1
WB|WBGene00004204 - symbol:swsn-4 species:6239 "Caenorhab... 1630 1.4e-167 1
WB|WBGene00016868 - symbol:C52B9.8 species:6239 "Caenorha... 1615 5.4e-166 1
SGD|S000005816 - symbol:SNF2 "Catalytic subunit of the SW... 1604 7.9e-165 1
ASPGD|ASPL0000042729 - symbol:AN2278 species:162425 "Emer... 1599 2.7e-164 1
SGD|S000001388 - symbol:STH1 "ATPase component of the RSC... 1593 1.2e-163 1
CGD|CAL0005444 - symbol:SNF2 species:5476 "Candida albica... 1548 6.8e-159 1
UNIPROTKB|Q5AM49 - symbol:SNF2 "Putative uncharacterized ... 1548 6.8e-159 1
POMBASE|SPAC1250.01 - symbol:snf21 "ATP-dependent DNA hel... 1547 8.6e-159 1
DICTYBASE|DDB_G0285205 - symbol:snf2a "SNF2-related prote... 1498 4.3e-156 2
POMBASE|SPCC1620.14c - symbol:snf22 "ATP-dependent DNA he... 1491 7.4e-153 1
FB|FBgn0000212 - symbol:brm "brahma" species:7227 "Drosop... 1465 4.2e-150 1
TAIR|locus:2062840 - symbol:SYD "SPLAYED" species:3702 "A... 1424 1.1e-144 3
UNIPROTKB|F1MJ46 - symbol:SMARCA4 "Transcription activato... 1301 1.0e-132 1
GENEDB_PFALCIPARUM|PFB0730w - symbol:PFB0730w "DNA helica... 994 1.7e-132 2
UNIPROTKB|O96239 - symbol:PFB0730w "DEAD/DEAH box helicas... 994 1.7e-132 2
TAIR|locus:2062999 - symbol:BRM "AT2G46020" species:3702 ... 779 1.1e-129 2
TAIR|locus:2182978 - symbol:CHR17 "chromatin remodeling f... 1262 1.4e-128 1
FB|FBgn0011604 - symbol:Iswi "Imitation SWI" species:7227... 1210 1.5e-125 2
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 1224 1.5e-124 1
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 1216 1.0e-123 1
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 1216 1.0e-123 1
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 1173 6.5e-123 2
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 1200 5.1e-122 1
UNIPROTKB|E2QVR5 - symbol:SMARCA1 "Uncharacterized protei... 1199 6.5e-122 1
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 1196 1.3e-121 1
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 1171 1.5e-121 2
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 1171 1.5e-121 2
UNIPROTKB|F1RTI9 - symbol:SMARCA1 "Uncharacterized protei... 1189 7.4e-121 1
UNIPROTKB|F1N166 - symbol:SMARCA1 "Uncharacterized protei... 1188 9.5e-121 1
UNIPROTKB|K7GLQ2 - symbol:SMARCA1 "Uncharacterized protei... 1187 1.2e-120 1
UNIPROTKB|K7GMM0 - symbol:SMARCA1 "Uncharacterized protei... 1187 1.2e-120 1
UNIPROTKB|F6TQG2 - symbol:SMARCA1 "Probable global transc... 1186 1.5e-120 1
UNIPROTKB|P28370 - symbol:SMARCA1 "Probable global transc... 1186 1.5e-120 1
DICTYBASE|DDB_G0284171 - symbol:DDB_G0284171 "CHR group p... 1159 2.9e-120 2
DICTYBASE|DDB_G0292948 - symbol:isw "CHR group protein" s... 1166 3.6e-120 2
UNIPROTKB|E1C0M8 - symbol:SMARCA5 "Uncharacterized protei... 1178 1.1e-119 1
UNIPROTKB|G4NCV5 - symbol:MGG_01012 "ISWI chromatin-remod... 1178 1.1e-119 1
ZFIN|ZDB-GENE-021125-1 - symbol:smarca5 "SWI/SNF related,... 1177 1.4e-119 1
RGD|1561046 - symbol:Smarca1 "SWI/SNF related, matrix ass... 1174 2.9e-119 1
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 1151 4.1e-119 2
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 1164 3.3e-118 1
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 1164 3.3e-118 1
UNIPROTKB|O60264 - symbol:SMARCA5 "SWI/SNF-related matrix... 1164 3.3e-118 1
UNIPROTKB|F1RRG9 - symbol:SMARCA5 "Uncharacterized protei... 1164 3.3e-118 1
MGI|MGI:1935129 - symbol:Smarca5 "SWI/SNF related, matrix... 1164 3.3e-118 1
RGD|1308832 - symbol:Smarca5 "SWI/SNF related, matrix ass... 1164 3.3e-118 1
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 1150 1.0e-116 1
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 1150 1.0e-116 1
WB|WBGene00002169 - symbol:isw-1 species:6239 "Caenorhabd... 1137 2.4e-115 1
POMBASE|SPAC3G6.01 - symbol:hrp3 "ATP-dependent DNA helic... 1069 8.2e-114 3
CGD|CAL0001390 - symbol:orf19.3035 species:5476 "Candida ... 1071 3.5e-113 3
TAIR|locus:2173644 - symbol:CHR1 "chromatin remodeling 1"... 1116 4.1e-113 1
UNIPROTKB|Q9NRZ9 - symbol:HELLS "Lymphoid-specific helica... 619 1.8e-112 2
POMBASE|SPAC1783.05 - symbol:hrp1 "ATP-dependent DNA heli... 1071 7.9e-112 2
TAIR|locus:2041644 - symbol:CHR5 "chromatin remodeling 5"... 1102 9.7e-112 2
SGD|S000000966 - symbol:CHD1 "Chromatin remodeler that re... 1083 1.6e-111 2
ASPGD|ASPL0000056677 - symbol:AN1024 species:162425 "Emer... 673 1.6e-111 2
UNIPROTKB|F1P5V4 - symbol:HELLS "Uncharacterized protein"... 616 1.6e-111 2
UNIPROTKB|E2QW28 - symbol:HELLS "Uncharacterized protein"... 615 3.4e-111 2
DICTYBASE|DDB_G0267638 - symbol:DDB_G0267638 "CHR group p... 703 4.5e-111 3
UNIPROTKB|F1SC64 - symbol:HELLS "Uncharacterized protein"... 616 5.5e-111 2
UNIPROTKB|E1BCV0 - symbol:HELLS "Uncharacterized protein"... 615 5.5e-111 2
RGD|1565642 - symbol:Srcap "Snf2-related CREBBP activator... 672 1.2e-110 3
ZFIN|ZDB-GENE-030131-9923 - symbol:hells "helicase, lymph... 618 1.5e-110 2
ZFIN|ZDB-GENE-050419-256 - symbol:chd2 "chromodomain heli... 1081 4.1e-110 2
UNIPROTKB|J9NSS6 - symbol:CHD2 "Uncharacterized protein" ... 1087 4.8e-110 1
ZFIN|ZDB-GENE-041014-72 - symbol:ino80 "INO80 homolog (S.... 653 5.5e-110 3
CGD|CAL0000801 - symbol:orf19.1720 species:5476 "Candida ... 646 1.0e-109 2
UNIPROTKB|Q5AJ72 - symbol:CaO19.1720 "Putative uncharacte... 646 1.0e-109 2
UNIPROTKB|F1RG74 - symbol:SRCAP "Uncharacterized protein"... 672 2.2e-109 3
UNIPROTKB|B6ZLK2 - symbol:CHD1 "Chromodomain-helicase-DNA... 1077 2.6e-109 2
UNIPROTKB|I3LQZ8 - symbol:CHD2 "Uncharacterized protein" ... 1088 2.6e-109 1
UNIPROTKB|J9NX79 - symbol:CHD2 "Uncharacterized protein" ... 1087 3.1e-109 1
UNIPROTKB|Q6ZRS2 - symbol:SRCAP "Helicase SRCAP" species:... 672 3.6e-109 3
WARNING: Descriptions of 478 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 2682 (949.2 bits), Expect = 1.8e-280, Sum P(2) = 1.8e-280
Identities = 525/739 (71%), Positives = 614/739 (83%)
Query: 1 MRLVKESKXXXXXXXXXXXXXXXXXXGAAVQRQKDSKHVDGIEPLKDSEXXXXXXXASEN 60
M+L KESK GAAVQRQKD+K + + LK SE S+
Sbjct: 276 MKLAKESKNEKLTLFLEETNKIFVSLGAAVQRQKDAKLSENTKLLKGSESDL-----SDV 330
Query: 61 GTPRDLHP-EEXXXXXXXXXXXXXXLLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQ 119
P D+ P ++ LLEG+RQ+N AIHSI+EKVT+QP+LLQGGELR+YQ
Sbjct: 331 DAPEDVLPAQDIEIIDSDNNDDSNDLLEGERQFNLAIHSIQEKVTKQPSLLQGGELRSYQ 390
Query: 120 LEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 179
LEGLQWM+SL+NN+ NGILADEMGLGKTIQTIALIAYLLE+K + GPH+I+APKAVLPNW
Sbjct: 391 LEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKAVLPNW 450
Query: 180 INEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWI 239
NEF+ WAPSI+A +YDG ++R +R G+FNVLITHYDLIMRD+ +LKK+ W
Sbjct: 451 ENEFALWAPSISAFLYDGSKEKRTEIRARIAG--GKFNVLITHYDLIMRDKAFLKKIDWN 508
Query: 240 YMIVDEGHRLKNHECALAKTI-SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSV 298
YMIVDEGHRLKNHECALAKT+ +GY+I+RRLLLTGTPIQNSLQELWSLLNFLLP IFNS+
Sbjct: 509 YMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSI 568
Query: 299 ENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILK 358
NFEEWFN PF + G +LTDEE+LLII RLHHVIRPF+LRRKK EVEK+LPGK+QVILK
Sbjct: 569 HNFEEWFNTPFAECGSASLTDEEELLIINRLHHVIRPFLLRRKKSEVEKFLPGKTQVILK 628
Query: 359 CDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVG-EYNMWRKE 417
CDMSAWQK+YY+QVTDVGRVGL +G GKSKSLQNL+MQLRKCCNHPYLFVG +YNM +K
Sbjct: 629 CDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQNLTMQLRKCCNHPYLFVGADYNMCKKP 688
Query: 418 EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTE 477
EI+RASGKFELLDRLLPKL+K+GHR+LLFSQMTRL+D+LEIYL LND+ +LRLDGSTKT+
Sbjct: 689 EIVRASGKFELLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTD 748
Query: 478 ERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI 537
+RG LLKQFN PDSPYFMFLLSTRAGGLGLNLQTADT+IIFDSDWNPQMDQQAEDRAHRI
Sbjct: 749 QRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRI 808
Query: 538 GQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRR 597
GQKKEVRVFVLVS+GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREML+EIM +
Sbjct: 809 GQKKEVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMSK 868
Query: 598 GTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAP 657
GTSSLG DVPSEREINRLAAR++EEFW+FE+MDEERR+KENY++RLME+ EVPEWAY++
Sbjct: 869 GTSSLGEDVPSEREINRLAARTEEEFWMFEQMDEERRKKENYKTRLMEEKEVPEWAYTS- 927
Query: 658 DNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKR 716
+ +E++ + FG S+TGKRKRKE VY+D+LSDLQWMKA+E+ +D SK+S + KR
Sbjct: 928 ETQEDKTNAKNHFG----SLTGKRKRKEAVYSDSLSDLQWMKAMESEDEDASKVSQKRKR 983
Query: 717 REYLPSEGNESASNSTGAE 735
+ N S + + +E
Sbjct: 984 TDTKTRMSNGSKAEAVLSE 1002
Score = 37 (18.1 bits), Expect = 1.8e-280, Sum P(2) = 1.8e-280
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 702 ENGQDISKLSTRGKRREYLP---SEGNESASNSTGAEKKN 738
EN + + T K+R P S N S+ K+N
Sbjct: 1025 ENEKPLHSWKTNKKKRSRYPVMTSSPNSRGKGSSKGSKRN 1064
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 925 (330.7 bits), Expect = 9.0e-178, Sum P(3) = 9.0e-178
Identities = 178/331 (53%), Positives = 233/331 (70%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
L G + Y + H++ E+V +Q L+ G L+ YQ++GL+W++SL+NNNLNGILADEMGL
Sbjct: 57 LARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGL 116
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKTIQTIALI YL+E+K + GP +I+ P + L NW EF WAPS+ V Y G P R+A
Sbjct: 117 GKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA 176
Query: 205 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ +
Sbjct: 177 FVPQLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 234
Query: 265 IQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQ 322
+ RRLLLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE
Sbjct: 235 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET 294
Query: 323 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD- 381
+LIIRRLH V+RPF+LRR K EVE LP K + ++KCDMSA Q+V Y+ + G + D
Sbjct: 295 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 354
Query: 382 -----TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 355 SEKDKKGKGGTKTLMNTIMQLRKICNHPYMF 385
Score = 648 (233.2 bits), Expect = 9.0e-178, Sum P(3) = 9.0e-178
Identities = 133/224 (59%), Positives = 163/224 (72%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF------VGEY-----NMWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F E+ + + ++ RASGKFELLDR
Sbjct: 361 GKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDR 420
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + H+VLLF QMT LM I+E Y FK+LRLDG+TK E+RG LLK FN P S
Sbjct: 421 ILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGS 480
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ+ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 481 EYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 540
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIM 595
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+
Sbjct: 541 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL 584
Score = 191 (72.3 bits), Expect = 9.0e-178, Sum P(3) = 9.0e-178
Identities = 52/154 (33%), Positives = 85/154 (55%)
Query: 605 DVPSEREINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNK 660
+VP + +N++ AR +EEF LF +MD +RR++E + RLME+ E+P W
Sbjct: 628 EVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEV 687
Query: 661 EE---QKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG--QDIS-----KL 710
E ++ EK FG G R RKEV Y+D+L++ QW+KA+E G ++I K
Sbjct: 688 ERLTCEEEEEKMFGR------GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKK 741
Query: 711 STRGKRREYLPSEGNESASNSTGAEKKNLDMKNE 744
S+R ++R+ G + + ST + K+ + K +
Sbjct: 742 SSRKRKRD--SDAGPSTPTTSTRSRDKDDESKKQ 773
Score = 60 (26.2 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 55/255 (21%), Positives = 104/255 (40%)
Query: 549 VSVGSIEEVILE-RAKQKMGIDAKVIQAGLFN-TTST-AQDRREMLKEIMRRGTSSLGTD 605
+ G++EE+ E R K+ + AG TTST ++D+ + K+ +RG
Sbjct: 725 IEEGTLEEIEEEVRQKKSSRKRKRDSDAGPSTPTTSTRSRDKDDESKKQKKRGRPPAEKL 784
Query: 606 VPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKG 665
P+ + + + + ++ R+ E + +L E+PE+ + +K
Sbjct: 785 SPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVF-IQLPSRKELPEYYELIRKPVDFKKI 843
Query: 666 FEKGFGHESSSITGKRKRKEVVYADTLS-DLQWMKAVENGQDISKL--STRGKRREYLPS 722
E+ H+ S+ K ++ + + +L+ E+ + + S R K + S
Sbjct: 844 KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 903
Query: 723 EGNESASNSTG----AEKKNLDMKNEIFPLASEGTSEDTFGSAPKR-LRFERRNSESSDI 777
EG ES G +E ++ +K +I L + ++D +R R R SD
Sbjct: 904 EGEESEEEEEGEEEGSESESRSVKVKI-KLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD 962
Query: 778 QSVEKSEHKGVQGSG 792
S E+ E GSG
Sbjct: 963 DSEEEQEEDR-SGSG 976
Score = 47 (21.6 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
Identities = 45/280 (16%), Positives = 111/280 (39%)
Query: 518 FDSDWNPQMDQQAED-----RAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM-GIDAK 571
FD +D++ E+ R R+ ++ E+ +++ +E + E ++KM G ++
Sbjct: 646 FDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSR 705
Query: 572 VIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDE 631
+ ++ + T ++ LK I GT + +++ +R R +
Sbjct: 706 HRKEVDYSDSLT---EKQWLKAI-EEGTLEEIEEEVRQKKSSRKRKRDSDAGPSTPTTST 761
Query: 632 ERRQKENYRSRLMEDHEVPEWAYSA-PDN--KEEQKGFEKGFGHESSSITGKRKRKEVVY 688
R K++ + + P S P N K+ +K + ++ SS +G++ + +
Sbjct: 762 RSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSS-SGRQLSEVFIQ 820
Query: 689 ADTLSDL-QWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFP 747
+ +L ++ + + D K+ R + +Y E + +++ +
Sbjct: 821 LPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLI- 879
Query: 748 LASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHKG 787
+ F S +++ E +SE + + E+ E +G
Sbjct: 880 YEDSIVLQSVFTSVRQKIEKED-DSEGEESEEEEEGEEEG 918
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 932 (333.1 bits), Expect = 2.8e-177, Sum P(3) = 2.8e-177
Identities = 178/328 (54%), Positives = 234/328 (71%)
Query: 88 GQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKT 147
G + Y + H+I E+V +Q LL G L+ YQL+GL+WM+SL+NNNLNGILADEMGLGKT
Sbjct: 679 GSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKT 738
Query: 148 IQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE 207
IQTIALI YL+E+K + GP++I+ P + L NW EF WAPS+ + Y G P R+++
Sbjct: 739 IQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVP 798
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ- 266
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ + +
Sbjct: 799 QLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 856
Query: 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLI 325
RR+LLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE +LI
Sbjct: 857 RRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILI 916
Query: 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD---- 381
IRRLH V+RPF+LRR K EVE LP K + ++KCDMSA QK+ Y+ + G + D
Sbjct: 917 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 976
Query: 382 --TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 977 DKKGKGGAKTLMNTIMQLRKICNHPYMF 1004
Score = 810 (290.2 bits), Expect = 2.8e-177, Sum P(3) = 2.8e-177
Identities = 178/375 (47%), Positives = 240/375 (64%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF----------VGEYN-MWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F +G N + E+ RASGKFELLDR
Sbjct: 980 GKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDR 1039
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + HRVLLF QMT LM I+E Y +F +LRLDG+TK+E+R LLK+FN P S
Sbjct: 1040 ILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGS 1099
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ ADTV+IFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1100 QYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1159
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ + D VP +
Sbjct: 1160 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDE 1219
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR+++ + RLME+ E+P W E +
Sbjct: 1220 TLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1279
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQ-DISKLSTRGKRREYLPS 722
+ EK FG G R+R++V Y+D L++ QW++A+E+G + + R K+R+ +
Sbjct: 1280 EEEEKIFGR------GSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRN 1333
Query: 723 EGNESASNSTGAEKK 737
+ A KK
Sbjct: 1334 VDKDPAKEDVEKAKK 1348
Score = 52 (23.4 bits), Expect = 3.5e-95, Sum P(2) = 3.5e-95
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRK 682
E+ ++E ++E + E NK+++KG +KG G + + GK K
Sbjct: 1474 EESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPN-RGKAK 1528
Score = 44 (20.5 bits), Expect = 2.8e-177, Sum P(3) = 2.8e-177
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 726 ESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEH 785
+SA E+++ D NE E SE S +++ +++ + D +K +
Sbjct: 1464 KSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPN 1523
Query: 786 KG 787
+G
Sbjct: 1524 RG 1525
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 932 (333.1 bits), Expect = 2.8e-177, Sum P(3) = 2.8e-177
Identities = 178/328 (54%), Positives = 234/328 (71%)
Query: 88 GQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKT 147
G + Y + H+I E+V +Q LL G L+ YQL+GL+WM+SL+NNNLNGILADEMGLGKT
Sbjct: 681 GSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKT 740
Query: 148 IQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE 207
IQTIALI YL+E+K + GP++I+ P + L NW EF WAPS+ + Y G P R+++
Sbjct: 741 IQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVP 800
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ- 266
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ + +
Sbjct: 801 QLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 858
Query: 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLI 325
RR+LLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE +LI
Sbjct: 859 RRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILI 918
Query: 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD---- 381
IRRLH V+RPF+LRR K EVE LP K + ++KCDMSA QK+ Y+ + G + D
Sbjct: 919 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 978
Query: 382 --TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 979 DKKGKGGAKTLMNTIMQLRKICNHPYMF 1006
Score = 810 (290.2 bits), Expect = 2.8e-177, Sum P(3) = 2.8e-177
Identities = 178/375 (47%), Positives = 240/375 (64%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF----------VGEYN-MWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F +G N + E+ RASGKFELLDR
Sbjct: 982 GKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDR 1041
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + HRVLLF QMT LM I+E Y +F +LRLDG+TK+E+R LLK+FN P S
Sbjct: 1042 ILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGS 1101
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ ADTV+IFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1102 QYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1161
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ + D VP +
Sbjct: 1162 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDE 1221
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR+++ + RLME+ E+P W E +
Sbjct: 1222 TLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1281
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQ-DISKLSTRGKRREYLPS 722
+ EK FG G R+R++V Y+D L++ QW++A+E+G + + R K+R+ +
Sbjct: 1282 EEEEKIFGR------GSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRN 1335
Query: 723 EGNESASNSTGAEKK 737
+ A KK
Sbjct: 1336 VDKDPAKEDVEKAKK 1350
Score = 52 (23.4 bits), Expect = 3.6e-95, Sum P(2) = 3.6e-95
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRK 682
E+ ++E ++E + E NK+++KG +KG G + + GK K
Sbjct: 1476 EESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPN-RGKAK 1530
Score = 44 (20.5 bits), Expect = 2.8e-177, Sum P(3) = 2.8e-177
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 726 ESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEH 785
+SA E+++ D NE E SE S +++ +++ + D +K +
Sbjct: 1466 KSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPN 1525
Query: 786 KG 787
+G
Sbjct: 1526 RG 1527
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 932 (333.1 bits), Expect = 2.8e-177, Sum P(3) = 2.8e-177
Identities = 178/328 (54%), Positives = 234/328 (71%)
Query: 88 GQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKT 147
G + Y + H+I E+V +Q LL G L+ YQL+GL+WM+SL+NNNLNGILADEMGLGKT
Sbjct: 681 GSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKT 740
Query: 148 IQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE 207
IQTIALI YL+E+K + GP++I+ P + L NW EF WAPS+ + Y G P R+++
Sbjct: 741 IQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVP 800
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ- 266
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ + +
Sbjct: 801 QLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 858
Query: 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLI 325
RR+LLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE +LI
Sbjct: 859 RRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILI 918
Query: 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD---- 381
IRRLH V+RPF+LRR K EVE LP K + ++KCDMSA QK+ Y+ + G + D
Sbjct: 919 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 978
Query: 382 --TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 979 DKKGKGGAKTLMNTIMQLRKICNHPYMF 1006
Score = 810 (290.2 bits), Expect = 2.8e-177, Sum P(3) = 2.8e-177
Identities = 178/375 (47%), Positives = 240/375 (64%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF----------VGEYN-MWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F +G N + E+ RASGKFELLDR
Sbjct: 982 GKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDR 1041
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + HRVLLF QMT LM I+E Y +F +LRLDG+TK+E+R LLK+FN P S
Sbjct: 1042 ILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGS 1101
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ ADTV+IFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1102 QYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1161
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ + D VP +
Sbjct: 1162 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDE 1221
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR+++ + RLME+ E+P W E +
Sbjct: 1222 TLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1281
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQ-DISKLSTRGKRREYLPS 722
+ EK FG G R+R++V Y+D L++ QW++A+E+G + + R K+R+ +
Sbjct: 1282 EEEEKIFGR------GSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRN 1335
Query: 723 EGNESASNSTGAEKK 737
+ A KK
Sbjct: 1336 VDKDPAKEDVEKAKK 1350
Score = 52 (23.4 bits), Expect = 3.6e-95, Sum P(2) = 3.6e-95
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRK 682
E+ ++E ++E + E NK+++KG +KG G + + GK K
Sbjct: 1476 EESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPN-RGKAK 1530
Score = 44 (20.5 bits), Expect = 2.8e-177, Sum P(3) = 2.8e-177
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 726 ESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEH 785
+SA E+++ D NE E SE S +++ +++ + D +K +
Sbjct: 1466 KSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPN 1525
Query: 786 KG 787
+G
Sbjct: 1526 RG 1527
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 932 (333.1 bits), Expect = 3.3e-177, Sum P(3) = 3.3e-177
Identities = 178/328 (54%), Positives = 234/328 (71%)
Query: 88 GQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKT 147
G + Y + H+I E+V +Q LL G L+ YQL+GL+WM+SL+NNNLNGILADEMGLGKT
Sbjct: 704 GSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKT 763
Query: 148 IQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE 207
IQTIALI YL+E+K + GP++I+ P + L NW EF WAPS+ + Y G P R+++
Sbjct: 764 IQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVP 823
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ- 266
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ + +
Sbjct: 824 QLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 881
Query: 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLI 325
RR+LLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE +LI
Sbjct: 882 RRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILI 941
Query: 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD---- 381
IRRLH V+RPF+LRR K EVE LP K + ++KCDMSA QK+ Y+ + G + D
Sbjct: 942 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 1001
Query: 382 --TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 1002 DKKGKGGAKTLMNTIMQLRKICNHPYMF 1029
Score = 808 (289.5 bits), Expect = 3.3e-177, Sum P(3) = 3.3e-177
Identities = 176/359 (49%), Positives = 236/359 (65%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF----------VGEYN-MWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F +G N + E+ RASGKFELLDR
Sbjct: 1005 GKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDR 1064
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + HRVLLF QMT LM I+E Y +F +LRLDG+TK+E+R LLK+FN P S
Sbjct: 1065 ILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGS 1124
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ ADTV+IFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1125 QYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1184
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ + D VP +
Sbjct: 1185 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDE 1244
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR+++ + RLME+ E+P W E +
Sbjct: 1245 TLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1304
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG-----QDISKLSTRGKRR 717
+ EK FG G R+R++V Y+D L++ QW++A+E+G ++ +L R +RR
Sbjct: 1305 EEEEKIFGR------GSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRR 1357
Score = 51 (23.0 bits), Expect = 5.9e-95, Sum P(2) = 5.9e-95
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRK 682
E+ +EE ++E + E NK+E+KG + G G + + GK K
Sbjct: 1517 EESEEESNEEEEEEDEEESEAEAKSVKVKIKLNKKEEKGRDTGKGKKRPN-RGKAK 1571
Score = 47 (21.6 bits), Expect = 3.3e-177, Sum P(3) = 3.3e-177
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 709 KLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFE 768
K++ + E E E + AE K++ +K ++ +G DT G KR
Sbjct: 1512 KIAKEEESEEESNEEEEEEDEEESEAEAKSVKVKIKLNKKEEKG--RDT-GKGKKRPNRG 1568
Query: 769 RRNSESSDIQS-VEKSEHKGVQGSG 792
+ SD S E+ E++ + SG
Sbjct: 1569 KAKPVVSDFDSDEEQDENEQSEASG 1593
Score = 41 (19.5 bits), Expect = 2.0e-96, Sum P(3) = 2.0e-96
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPE 651
E+M+EE R K+ R R ++ V E
Sbjct: 1342 EEMEEEVRLKKRKRRRNVDKDPVKE 1366
Score = 39 (18.8 bits), Expect = 2.3e-176, Sum P(3) = 2.3e-176
Identities = 12/62 (19%), Positives = 26/62 (41%)
Query: 726 ESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEH 785
+SA E+++ + NE E SE S +++ ++ + D +K +
Sbjct: 1507 KSARQKIAKEEESEEESNEEEEEEDEEESEAEAKSVKVKIKLNKKEEKGRDTGKGKKRPN 1566
Query: 786 KG 787
+G
Sbjct: 1567 RG 1568
Score = 38 (18.4 bits), Expect = 1.4e-93, Sum P(2) = 1.4e-93
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 590 MLKEIMRRGTSSLGTDVPSEREINRLAARSDEE 622
+L+ + + + + SE E N DEE
Sbjct: 1501 VLQSVFKSARQKIAKEEESEEESNEEEEEEDEE 1533
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 932 (333.1 bits), Expect = 3.4e-177, Sum P(3) = 3.4e-177
Identities = 178/328 (54%), Positives = 234/328 (71%)
Query: 88 GQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKT 147
G + Y + H+I E+V +Q LL G L+ YQL+GL+WM+SL+NNNLNGILADEMGLGKT
Sbjct: 681 GSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKT 740
Query: 148 IQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE 207
IQTIALI YL+E+K + GP++I+ P + L NW EF WAPS+ + Y G P R+++
Sbjct: 741 IQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVP 800
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ- 266
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ + +
Sbjct: 801 QLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 858
Query: 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLI 325
RR+LLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE +LI
Sbjct: 859 RRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILI 918
Query: 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD---- 381
IRRLH V+RPF+LRR K EVE LP K + ++KCDMSA QK+ Y+ + G + D
Sbjct: 919 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 978
Query: 382 --TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 979 DKKGKGGAKTLMNTIMQLRKICNHPYMF 1006
Score = 810 (290.2 bits), Expect = 3.4e-177, Sum P(3) = 3.4e-177
Identities = 178/375 (47%), Positives = 240/375 (64%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF----------VGEYN-MWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F +G N + E+ RASGKFELLDR
Sbjct: 982 GKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDR 1041
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + HRVLLF QMT LM I+E Y +F +LRLDG+TK+E+R LLK+FN P S
Sbjct: 1042 ILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGS 1101
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ ADTV+IFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1102 QYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1161
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ + D VP +
Sbjct: 1162 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDE 1221
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR+++ + RLME+ E+P W E +
Sbjct: 1222 TLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1281
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQ-DISKLSTRGKRREYLPS 722
+ EK FG G R+R++V Y+D L++ QW++A+E+G + + R K+R+ +
Sbjct: 1282 EEEEKIFGR------GSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRN 1335
Query: 723 EGNESASNSTGAEKK 737
+ A KK
Sbjct: 1336 VDKDPAKEDVEKAKK 1350
Score = 52 (23.4 bits), Expect = 4.0e-95, Sum P(2) = 4.0e-95
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRK 682
E+ ++E ++E + E NK+++KG +KG G + + GK K
Sbjct: 1494 EESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPN-RGKAK 1548
Score = 44 (20.5 bits), Expect = 3.4e-177, Sum P(3) = 3.4e-177
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 726 ESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEH 785
+SA E+++ D NE E SE S +++ +++ + D +K +
Sbjct: 1484 KSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPN 1543
Query: 786 KG 787
+G
Sbjct: 1544 RG 1545
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 932 (333.1 bits), Expect = 3.9e-177, Sum P(3) = 3.9e-177
Identities = 178/328 (54%), Positives = 234/328 (71%)
Query: 88 GQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKT 147
G + Y + H+I E+V +Q LL G L+ YQL+GL+WM+SL+NNNLNGILADEMGLGKT
Sbjct: 697 GSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKT 756
Query: 148 IQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE 207
IQTIALI YL+E+K + GP++I+ P + L NW EF WAPS+ + Y G P R+++
Sbjct: 757 IQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVP 816
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ- 266
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ + +
Sbjct: 817 QLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 874
Query: 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLI 325
RR+LLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE +LI
Sbjct: 875 RRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILI 934
Query: 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD---- 381
IRRLH V+RPF+LRR K EVE LP K + ++KCDMSA QK+ Y+ + G + D
Sbjct: 935 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 994
Query: 382 --TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 995 DKKGKGGAKTLMNTIMQLRKICNHPYMF 1022
Score = 810 (290.2 bits), Expect = 3.9e-177, Sum P(3) = 3.9e-177
Identities = 178/375 (47%), Positives = 240/375 (64%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF----------VGEYN-MWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F +G N + E+ RASGKFELLDR
Sbjct: 998 GKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDR 1057
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + HRVLLF QMT LM I+E Y +F +LRLDG+TK+E+R LLK+FN P S
Sbjct: 1058 ILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGS 1117
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ ADTV+IFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1118 QYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1177
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ + D VP +
Sbjct: 1178 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDE 1237
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR+++ + RLME+ E+P W E +
Sbjct: 1238 TLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1297
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQ-DISKLSTRGKRREYLPS 722
+ EK FG G R+R++V Y+D L++ QW++A+E+G + + R K+R+ +
Sbjct: 1298 EEEEKIFGR------GSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRN 1351
Query: 723 EGNESASNSTGAEKK 737
+ A KK
Sbjct: 1352 VDKDPAKEDVEKAKK 1366
Score = 50 (22.7 bits), Expect = 7.2e-95, Sum P(2) = 7.2e-95
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRK 682
E+ ++E ++E + E NK++ KG +KG G + + GK K
Sbjct: 1510 EESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPN-RGKAK 1564
Score = 44 (20.5 bits), Expect = 3.9e-177, Sum P(3) = 3.9e-177
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 726 ESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEH 785
+SA E+++ D NE E SE S +++ +++ + D +K +
Sbjct: 1500 KSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPN 1559
Query: 786 KG 787
+G
Sbjct: 1560 RG 1561
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 932 (333.1 bits), Expect = 5.6e-177, Sum P(3) = 5.6e-177
Identities = 178/328 (54%), Positives = 234/328 (71%)
Query: 88 GQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKT 147
G + Y + H+I E+V +Q LL G L+ YQL+GL+WM+SL+NNNLNGILADEMGLGKT
Sbjct: 702 GSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKT 761
Query: 148 IQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE 207
IQTIALI YL+E+K + GP++I+ P + L NW EF WAPS+ + Y G P R+++
Sbjct: 762 IQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVP 821
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ- 266
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ + +
Sbjct: 822 QLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 879
Query: 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLI 325
RR+LLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE +LI
Sbjct: 880 RRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILI 939
Query: 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD---- 381
IRRLH V+RPF+LRR K EVE LP K + ++KCDMSA QK+ Y+ + G + D
Sbjct: 940 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 999
Query: 382 --TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 1000 DKKGKGGAKTLMNTIMQLRKICNHPYMF 1027
Score = 808 (289.5 bits), Expect = 5.6e-177, Sum P(3) = 5.6e-177
Identities = 176/359 (49%), Positives = 236/359 (65%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF----------VGEYN-MWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F +G N + E+ RASGKFELLDR
Sbjct: 1003 GKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDR 1062
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + HRVLLF QMT LM I+E Y +F +LRLDG+TK+E+R LLK+FN P S
Sbjct: 1063 ILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGS 1122
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ ADTV+IFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1123 QYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1182
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ + D VP +
Sbjct: 1183 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDE 1242
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR+++ + RLME+ E+P W E +
Sbjct: 1243 TLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1302
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG-----QDISKLSTRGKRR 717
+ EK FG G R+R++V Y+D L++ QW++A+E+G ++ +L R +RR
Sbjct: 1303 EEEEKIFGR------GSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRR 1355
Score = 50 (22.7 bits), Expect = 6.7e-95, Sum P(2) = 6.7e-95
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRK 682
E+ +EE ++E + E NK+E+KG + G G + + GK K
Sbjct: 1497 EESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEKGRDTGKGKKRPN-RGKAK 1551
Score = 44 (20.5 bits), Expect = 5.6e-177, Sum P(3) = 5.6e-177
Identities = 20/85 (23%), Positives = 36/85 (42%)
Query: 709 KLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFE 768
K++ + E E E + +E K++ +K ++ +G DT G KR
Sbjct: 1492 KIAKEEESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEKG--RDT-GKGKKRPNRG 1548
Query: 769 RRNSESSDIQS-VEKSEHKGVQGSG 792
+ SD S E+ E++ + SG
Sbjct: 1549 KAKPVVSDFDSDEEQEENEQSEASG 1573
Score = 41 (19.5 bits), Expect = 3.4e-96, Sum P(3) = 3.4e-96
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPE 651
E+M+EE R K+ R R ++ V E
Sbjct: 1340 EEMEEEVRLKKRKRRRNVDKDPVKE 1364
Score = 40 (19.1 bits), Expect = 1.5e-176, Sum P(3) = 1.5e-176
Identities = 12/62 (19%), Positives = 26/62 (41%)
Query: 726 ESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEH 785
+SA E+++ + NE E SE S +++ ++ + D +K +
Sbjct: 1487 KSARQKIAKEEESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEKGRDTGKGKKRPN 1546
Query: 786 KG 787
+G
Sbjct: 1547 RG 1548
Score = 38 (18.4 bits), Expect = 1.2e-93, Sum P(2) = 1.2e-93
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 590 MLKEIMRRGTSSLGTDVPSEREINRLAARSDEE 622
+L+ + + + + SE E N DEE
Sbjct: 1481 VLQSVFKSARQKIAKEEESEEESNEEEEEDDEE 1513
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 925 (330.7 bits), Expect = 1.3e-176, Sum P(3) = 1.3e-176
Identities = 178/331 (53%), Positives = 233/331 (70%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
L G + Y + H++ E+V +Q L+ G L+ YQ++GL+W++SL+NNNLNGILADEMGL
Sbjct: 523 LARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGL 582
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKTIQTIALI YL+E+K + GP +I+ P + L NW EF WAPS+ V Y G P R+A
Sbjct: 583 GKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA 642
Query: 205 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ +
Sbjct: 643 FVPQLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 700
Query: 265 IQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQ 322
+ RRLLLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE
Sbjct: 701 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET 760
Query: 323 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD- 381
+LIIRRLH V+RPF+LRR K EVE LP K + ++KCDMSA Q+V Y+ + G + D
Sbjct: 761 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 820
Query: 382 -----TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 821 SEKDKKGKGGTKTLMNTIMQLRKICNHPYMF 851
Score = 648 (233.2 bits), Expect = 1.3e-176, Sum P(3) = 1.3e-176
Identities = 133/224 (59%), Positives = 163/224 (72%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF------VGEY-----NMWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F E+ + + ++ RASGKFELLDR
Sbjct: 827 GKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDR 886
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + H+VLLF QMT LM I+E Y FK+LRLDG+TK E+RG LLK FN P S
Sbjct: 887 ILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGS 946
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ+ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 947 EYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1006
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIM 595
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+
Sbjct: 1007 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL 1050
Score = 180 (68.4 bits), Expect = 1.3e-176, Sum P(3) = 1.3e-176
Identities = 54/159 (33%), Positives = 88/159 (55%)
Query: 605 DVPSEREINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNK 660
+VP + +N++ AR +EEF LF +MD +RR++E + RLME+ E+P W
Sbjct: 1094 EVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEV 1153
Query: 661 EE---QKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMK----AVENG--QDIS--- 708
E ++ EK FG G R RKEV Y+D+L++ QW+K A+E G ++I
Sbjct: 1154 ERLTCEEEEEKMFGR------GSRHRKEVDYSDSLTEKQWLKQLKAAIEEGTLEEIEEEV 1207
Query: 709 --KLSTRGKRREYLPSE-GNESASNSTGAEKKNLDMKNE 744
K S+R ++R+ SE G+ + + ST + K+ + K +
Sbjct: 1208 RQKKSSRKRKRD---SEAGSSTPTTSTRSRDKDEESKKQ 1243
Score = 45 (20.9 bits), Expect = 1.4e-95, Sum P(2) = 1.4e-95
Identities = 20/110 (18%), Positives = 49/110 (44%)
Query: 518 FDSDWNPQMDQQAED-----RAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM-GIDAK 571
FD +D++ E+ R R+ ++ E+ +++ +E + E ++KM G ++
Sbjct: 1112 FDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSR 1171
Query: 572 VIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDE 621
+ ++ + T + + LK + GT + +++ +R R E
Sbjct: 1172 HRKEVDYSDSLTEKQWLKQLKAAIEEGTLEEIEEEVRQKKSSRKRKRDSE 1221
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 929 (332.1 bits), Expect = 1.6e-176, Sum P(2) = 1.6e-176
Identities = 180/330 (54%), Positives = 234/330 (70%)
Query: 86 LEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLG 145
+ G + Y + H++ EKV +Q +LL G+L+ YQ++GL+W++SL+NNNLNGILADEMGLG
Sbjct: 737 IRGLQSYYAVAHAVTEKVEKQSSLLVNGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLG 796
Query: 146 KTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAM 205
KTIQTIALI YL+E K + GP +I+ P + L NW+ EF WAPS+ V Y G P R+A
Sbjct: 797 KTIQTIALITYLMEFKRLNGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARRAF 856
Query: 206 REEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQ 264
S G+FNVL+T Y+ I++D+Q L K++W YMIVDEGHR+KNH C L + ++ Y
Sbjct: 857 LPILRS--GKFNVLVTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYL 914
Query: 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQL 323
RR+LLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE +
Sbjct: 915 APRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI 974
Query: 324 LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD-- 381
LIIRRLH V+RPF+LRR K EVE LP K + ++KCDMSA Q+V Y+ + G + D
Sbjct: 975 LIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGS 1034
Query: 382 ----TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 1035 EKDKKGKGGTKTLMNTIMQLRKICNHPYMF 1064
Score = 827 (296.2 bits), Expect = 1.6e-176, Sum P(2) = 1.6e-176
Identities = 188/389 (48%), Positives = 249/389 (64%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF------VGEY-----NMWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F E+ + + ++ RASGKFELLDR
Sbjct: 1040 GKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGSDLYRASGKFELLDR 1099
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + H+VLLF QMT LM I+E Y +FK+LRLDG+TK E+RG LLK FN P
Sbjct: 1100 ILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKNFNDPSH 1159
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ+ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1160 QYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1219
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ D VP +
Sbjct: 1220 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDE 1279
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ ARS+EEF F +MD +RR++E R RLME+ E+P W E +
Sbjct: 1280 TVNQMIARSEEEFDHFMRMDLDRRREEARNPKRRPRLMEEDELPTWIMKDDAEVERLTCE 1339
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG--QDIS-----KLSTRGKR 716
+ EK FG G R+RKEV Y+D+L++ QW+KA+E G +I K +TR ++
Sbjct: 1340 EEEEKMFGR------GSRQRKEVDYSDSLTEKQWLKAIEEGTLDEIEEEVRHKKTTRKRK 1393
Query: 717 REY-LPSEGNESASNSTGAEKKNLDMKNE 744
R+ L G + S+S + K+ D K +
Sbjct: 1394 RDRDLDLPGPATPSSSGRSRDKDDDGKKQ 1422
Score = 41 (19.5 bits), Expect = 1.7e-93, Sum P(2) = 1.7e-93
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 640 RSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRK--RKE 685
R ++ ++ E E D++EE+ ++G ES S+ K K RK+
Sbjct: 1542 RQKIEKEEEESE----GDDSEEEEDDVDEGSESESRSVKVKIKLSRKD 1585
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 925 (330.7 bits), Expect = 2.0e-176, Sum P(3) = 2.0e-176
Identities = 177/328 (53%), Positives = 232/328 (70%)
Query: 88 GQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKT 147
G + Y + H+I E+V +Q LL G L+ YQL+GL+WM+SL+NNNLNGILADEMG GKT
Sbjct: 704 GSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGPGKT 763
Query: 148 IQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE 207
IQTIALI YL+E+KG+ GP++I+ P + L NW EF WAPS + Y G P R+++
Sbjct: 764 IQTIALITYLMEHKGLNGPYLIIVPLSTLSNWTYEFDKWAPSAVKISYKGTPAMRRSLVP 823
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ- 266
+ S G+FN L+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ + +
Sbjct: 824 QLRS--GKFNALLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 881
Query: 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLI 325
RR+LLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE +LI
Sbjct: 882 RRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILI 941
Query: 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD---- 381
IRRLH V+RPF+LRR K EVE LP K + ++KCDMSA QK+ Y+ + G + D
Sbjct: 942 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 1001
Query: 382 --TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 1002 DKKGKGGAKTLMNTIMQLRKICNHPYMF 1029
Score = 808 (289.5 bits), Expect = 2.0e-176, Sum P(3) = 2.0e-176
Identities = 176/359 (49%), Positives = 236/359 (65%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF----------VGEYN-MWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F +G N + E+ RASGKFELLDR
Sbjct: 1005 GKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDR 1064
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + HRVLLF QMT LM I+E Y +F +LRLDG+TK+E+R LLK+FN P S
Sbjct: 1065 ILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGS 1124
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ ADTV+IFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1125 QYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1184
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ + D VP +
Sbjct: 1185 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDE 1244
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR+++ + RLME+ E+P W E +
Sbjct: 1245 TLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1304
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG-----QDISKLSTRGKRR 717
+ EK FG G R+R++V Y+D L++ QW++A+E+G ++ +L R +RR
Sbjct: 1305 EEEEKIFGR------GSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRR 1357
Score = 51 (23.0 bits), Expect = 3.4e-94, Sum P(2) = 3.4e-94
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRK 682
E+ +EE ++E + E NK+E+KG + G G + + GK K
Sbjct: 1517 EESEEESNEEEEEEDEEESEAEAKSVKVKIKLNKKEEKGRDTGKGKKRPN-RGKAK 1571
Score = 47 (21.6 bits), Expect = 2.0e-176, Sum P(3) = 2.0e-176
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 709 KLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFE 768
K++ + E E E + AE K++ +K ++ +G DT G KR
Sbjct: 1512 KIAKEEESEEESNEEEEEEDEEESEAEAKSVKVKIKLNKKEEKG--RDT-GKGKKRPNRG 1568
Query: 769 RRNSESSDIQS-VEKSEHKGVQGSG 792
+ SD S E+ E++ + SG
Sbjct: 1569 KAKPVVSDFDSDEEQDENEQSEASG 1593
Score = 41 (19.5 bits), Expect = 1.2e-95, Sum P(3) = 1.2e-95
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPE 651
E+M+EE R K+ R R ++ V E
Sbjct: 1342 EEMEEEVRLKKRKRRRNVDKDPVKE 1366
Score = 39 (18.8 bits), Expect = 1.4e-175, Sum P(3) = 1.4e-175
Identities = 12/62 (19%), Positives = 26/62 (41%)
Query: 726 ESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEH 785
+SA E+++ + NE E SE S +++ ++ + D +K +
Sbjct: 1507 KSARQKIAKEEESEEESNEEEEEEDEEESEAEAKSVKVKIKLNKKEEKGRDTGKGKKRPN 1566
Query: 786 KG 787
+G
Sbjct: 1567 RG 1568
Score = 38 (18.4 bits), Expect = 8.1e-93, Sum P(2) = 8.1e-93
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 590 MLKEIMRRGTSSLGTDVPSEREINRLAARSDEE 622
+L+ + + + + SE E N DEE
Sbjct: 1501 VLQSVFKSARQKIAKEEESEEESNEEEEEEDEE 1533
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 925 (330.7 bits), Expect = 2.5e-176, Sum P(2) = 2.5e-176
Identities = 178/331 (53%), Positives = 233/331 (70%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
L G + Y + H++ E+V +Q L+ G L+ YQ++GL+W++SL+NNNLNGILADEMGL
Sbjct: 724 LARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGL 783
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKTIQTIALI YL+E+K + GP +I+ P + L NW EF WAPS+ V Y G P R+A
Sbjct: 784 GKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA 843
Query: 205 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ +
Sbjct: 844 FVPQLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 901
Query: 265 IQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQ 322
+ RRLLLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE
Sbjct: 902 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET 961
Query: 323 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD- 381
+LIIRRLH V+RPF+LRR K EVE LP K + ++KCDMSA Q+V Y+ + G + D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 382 -----TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 1022 SEKDKKGKGGTKTLMNTIMQLRKICNHPYMF 1052
Score = 829 (296.9 bits), Expect = 2.5e-176, Sum P(2) = 2.5e-176
Identities = 186/388 (47%), Positives = 249/388 (64%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF------VGEY-----NMWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F E+ + + ++ RASGKFELLDR
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDR 1087
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + H+VLLF QMT LM I+E Y FK+LRLDG+TK E+RG LLK FN P S
Sbjct: 1088 ILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGS 1147
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ+ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1148 EYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1207
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ D VP +
Sbjct: 1208 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDE 1267
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR++E + RLME+ E+P W E +
Sbjct: 1268 TVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1327
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG--QDIS-----KLSTRGKR 716
+ EK FG G R RKEV Y+D+L++ QW+KA+E G ++I K S+R ++
Sbjct: 1328 EEEEKMFGR------GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRK 1381
Query: 717 REYLPSEGNESASNSTGAEKKNLDMKNE 744
R+ G+ + + ST + K+ + K +
Sbjct: 1382 RD--SEAGSSTPTTSTRSRDKDEESKKQ 1407
Score = 68 (29.0 bits), Expect = 6.1e-96, Sum P(2) = 6.1e-96
Identities = 57/255 (22%), Positives = 104/255 (40%)
Query: 549 VSVGSIEEVILE-RAKQKMGIDAKVIQAGLFN-TTST-AQDRREMLKEIMRRGTSSLGTD 605
+ G++EE+ E R K+ + +AG TTST ++D+ E K+ +RG
Sbjct: 1359 IEEGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSRDKDEESKKQKKRGRPPAEKL 1418
Query: 606 VPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKG 665
P+ + + + + + + D RQ +L E+PE+ + +K
Sbjct: 1419 SPNPPNLTKKMKKIVDA--VIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKI 1476
Query: 666 FEKGFGHESSSITGKRKRKEVVYADTLS-DLQWMKAVENGQDISKL--STRGKRREYLPS 722
E+ H+ S+ K ++ + + +L+ E+ + + S R K + S
Sbjct: 1477 KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 1536
Query: 723 EGNESASNSTG----AEKKNLDMKNEIFPLASEGTSEDTFGSAPKR-LRFERRNSESSDI 777
EG ES G +E ++ +K +I L + ++D +R R R SD
Sbjct: 1537 EGEESEEEEEGEEEGSESESRSVKVKI-KLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD 1595
Query: 778 QSVEKSEHKGVQGSG 792
S E+ E GSG
Sbjct: 1596 DSEEEQEEDR-SGSG 1609
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 925 (330.7 bits), Expect = 2.5e-176, Sum P(2) = 2.5e-176
Identities = 178/331 (53%), Positives = 233/331 (70%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
L G + Y + H++ E+V +Q L+ G L+ YQ++GL+W++SL+NNNLNGILADEMGL
Sbjct: 724 LARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGL 783
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKTIQTIALI YL+E+K + GP +I+ P + L NW EF WAPS+ V Y G P R+A
Sbjct: 784 GKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA 843
Query: 205 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ +
Sbjct: 844 FVPQLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 901
Query: 265 IQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQ 322
+ RRLLLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE
Sbjct: 902 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET 961
Query: 323 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD- 381
+LIIRRLH V+RPF+LRR K EVE LP K + ++KCDMSA Q+V Y+ + G + D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 382 -----TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 1022 SEKDKKGKGGTKTLMNTIMQLRKICNHPYMF 1052
Score = 829 (296.9 bits), Expect = 2.5e-176, Sum P(2) = 2.5e-176
Identities = 186/388 (47%), Positives = 249/388 (64%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF------VGEY-----NMWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F E+ + + ++ RASGKFELLDR
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDR 1087
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + H+VLLF QMT LM I+E Y FK+LRLDG+TK E+RG LLK FN P S
Sbjct: 1088 ILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGS 1147
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ+ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1148 EYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1207
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ D VP +
Sbjct: 1208 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDE 1267
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR++E + RLME+ E+P W E +
Sbjct: 1268 TVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1327
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG--QDIS-----KLSTRGKR 716
+ EK FG G R RKEV Y+D+L++ QW+KA+E G ++I K S+R ++
Sbjct: 1328 EEEEKMFGR------GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRK 1381
Query: 717 REYLPSEGNESASNSTGAEKKNLDMKNE 744
R+ G+ + + ST + K+ + K +
Sbjct: 1382 RD--SEAGSSTPTTSTRSRDKDEESKKQ 1407
Score = 67 (28.6 bits), Expect = 7.7e-96, Sum P(2) = 7.7e-96
Identities = 57/255 (22%), Positives = 104/255 (40%)
Query: 549 VSVGSIEEVILE-RAKQKMGIDAKVIQAGLFN-TTST-AQDRREMLKEIMRRGTSSLGTD 605
+ G++EE+ E R K+ + +AG TTST ++D+ E K+ +RG
Sbjct: 1359 IEEGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSRDKDEESKKQKKRGRPPAEKL 1418
Query: 606 VPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKG 665
P+ + + + + + + D RQ +L E+PE+ + +K
Sbjct: 1419 SPNPPNLTKKMKKIVDA--VIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKI 1476
Query: 666 FEKGFGHESSSITGKRKRKEVVYADTLS-DLQWMKAVENGQDISKL--STRGKRREYLPS 722
E+ H+ S+ K ++ + + +L+ E+ + + S R K + S
Sbjct: 1477 KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 1536
Query: 723 EGNESASNSTG----AEKKNLDMKNEIFPLASEGTSEDTFGSAPKR-LRFERRNSESSDI 777
EG ES G +E ++ +K +I L + ++D +R R R SD
Sbjct: 1537 EGEESEEEEEGEEEGSESESRSVKVKI-KLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD 1595
Query: 778 QSVEKSEHKGVQGSG 792
S E+ E GSG
Sbjct: 1596 DSDEEQEEDR-SGSG 1609
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 925 (330.7 bits), Expect = 2.5e-176, Sum P(2) = 2.5e-176
Identities = 178/331 (53%), Positives = 233/331 (70%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
L G + Y + H++ E+V +Q L+ G L+ YQ++GL+W++SL+NNNLNGILADEMGL
Sbjct: 724 LARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGL 783
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKTIQTIALI YL+E+K + GP +I+ P + L NW EF WAPS+ V Y G P R+A
Sbjct: 784 GKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA 843
Query: 205 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ +
Sbjct: 844 FVPQLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 901
Query: 265 IQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQ 322
+ RRLLLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE
Sbjct: 902 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET 961
Query: 323 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD- 381
+LIIRRLH V+RPF+LRR K EVE LP K + ++KCDMSA Q+V Y+ + G + D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 382 -----TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 1022 SEKDKKGKGGTKTLMNTIMQLRKICNHPYMF 1052
Score = 829 (296.9 bits), Expect = 2.5e-176, Sum P(2) = 2.5e-176
Identities = 186/388 (47%), Positives = 249/388 (64%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF------VGEY-----NMWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F E+ + + ++ RASGKFELLDR
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDR 1087
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + H+VLLF QMT LM I+E Y FK+LRLDG+TK E+RG LLK FN P S
Sbjct: 1088 ILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGS 1147
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ+ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1148 EYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1207
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ D VP +
Sbjct: 1208 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDE 1267
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR++E + RLME+ E+P W E +
Sbjct: 1268 TVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1327
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG--QDIS-----KLSTRGKR 716
+ EK FG G R RKEV Y+D+L++ QW+KA+E G ++I K S+R ++
Sbjct: 1328 EEEEKMFGR------GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRK 1381
Query: 717 REYLPSEGNESASNSTGAEKKNLDMKNE 744
R+ G+ + + ST + K+ + K +
Sbjct: 1382 RD--SEAGSSTPTTSTRSRDKDEESKKQ 1407
Score = 65 (27.9 bits), Expect = 1.3e-95, Sum P(2) = 1.3e-95
Identities = 56/255 (21%), Positives = 105/255 (41%)
Query: 549 VSVGSIEEVILE-RAKQKMGIDAKVIQAGLFN-TTST-AQDRREMLKEIMRRGTSSLGTD 605
+ G++EE+ E R K+ + +AG TTST ++D+ E K+ +RG
Sbjct: 1359 IEEGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSRDKDEESKKQKKRGRPPAEKL 1418
Query: 606 VPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKG 665
P+ + + + + ++ R+ E + +L E+PE+ + +K
Sbjct: 1419 SPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVF-IQLPSRKELPEYYELIRKPVDFKKI 1477
Query: 666 FEKGFGHESSSITGKRKRKEVVYADTLS-DLQWMKAVENGQDISKL--STRGKRREYLPS 722
E+ H+ S+ K ++ + + +L+ E+ + + S R K + S
Sbjct: 1478 KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 1537
Query: 723 EGNESASNSTG----AEKKNLDMKNEIFPLASEGTSEDTFGSAPKR-LRFERRNSESSDI 777
EG ES G +E ++ +K +I L + ++D +R R R SD
Sbjct: 1538 EGEESEEEEEGEEEGSESESRSVKVKI-KLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD 1596
Query: 778 QSVEKSEHKGVQGSG 792
S E+ E GSG
Sbjct: 1597 DSDEEQEEDR-SGSG 1610
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 925 (330.7 bits), Expect = 3.2e-176, Sum P(2) = 3.2e-176
Identities = 178/331 (53%), Positives = 233/331 (70%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
L G + Y + H++ E+V +Q L+ G L+ YQ++GL+W++SL+NNNLNGILADEMGL
Sbjct: 724 LARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGL 783
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKTIQTIALI YL+E+K + GP +I+ P + L NW EF WAPS+ V Y G P R+A
Sbjct: 784 GKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA 843
Query: 205 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ +
Sbjct: 844 FVPQLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 901
Query: 265 IQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQ 322
+ RRLLLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE
Sbjct: 902 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET 961
Query: 323 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD- 381
+LIIRRLH V+RPF+LRR K EVE LP K + ++KCDMSA Q+V Y+ + G + D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 382 -----TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 1022 SEKDKKGKGGTKTLMNTIMQLRKICNHPYMF 1052
Score = 828 (296.5 bits), Expect = 3.2e-176, Sum P(2) = 3.2e-176
Identities = 186/388 (47%), Positives = 249/388 (64%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF------VGEY-----NMWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F E+ + + ++ RASGKFELLDR
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDR 1087
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + H+VLLF QMT LM I+E Y FK+LRLDG+TK E+RG LLK FN P S
Sbjct: 1088 ILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGS 1147
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ+ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1148 EYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1207
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ D VP +
Sbjct: 1208 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDE 1267
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR++E + RLME+ E+P W E +
Sbjct: 1268 TVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1327
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG--QDIS-----KLSTRGKR 716
+ EK FG G R RKEV Y+D+L++ QW+KA+E G ++I K S+R ++
Sbjct: 1328 EEEEKMFGR------GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRK 1381
Query: 717 REYLPSEGNESASNSTGAEKKNLDMKNE 744
R+ G+ + + ST + K+ + K +
Sbjct: 1382 RD--SDAGSSTPTTSTRSRDKDDESKKQ 1407
Score = 65 (27.9 bits), Expect = 1.3e-95, Sum P(2) = 1.3e-95
Identities = 56/255 (21%), Positives = 105/255 (41%)
Query: 549 VSVGSIEEVILE-RAKQKMGIDAKVIQAGLFN-TTST-AQDRREMLKEIMRRGTSSLGTD 605
+ G++EE+ E R K+ + AG TTST ++D+ + K+ +RG
Sbjct: 1359 IEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKL 1418
Query: 606 VPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKG 665
P+ + + + + ++ R+ E + +L E+PE+ + +K
Sbjct: 1419 SPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVF-IQLPSRKELPEYYELIRKPVDFKKI 1477
Query: 666 FEKGFGHESSSITGKRKRKEVVYADTLS-DLQWMKAVENGQDISKL--STRGKRREYLPS 722
E+ H+ S+ K ++ + + +L+ E+ + + S R K + S
Sbjct: 1478 KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 1537
Query: 723 EGNESASNSTG----AEKKNLDMKNEIFPLASEGTSEDTF-GSAPKRLRFERRNSESSDI 777
EG ES G +E ++ +K +I L + ++D GS + R R SD
Sbjct: 1538 EGEESEEEEEGEEEGSESESRSVKVKI-KLGRKEKAQDRLKGSRRRPSRGSRAKPVVSDD 1596
Query: 778 QSVEKSEHKGVQGSG 792
S E+ E GSG
Sbjct: 1597 DSEEEQEEDR-SGSG 1610
Score = 37 (18.1 bits), Expect = 1.1e-92, Sum P(2) = 1.1e-92
Identities = 31/138 (22%), Positives = 54/138 (39%)
Query: 540 KKEVRVFVLVSVGSIEE--VILERAKQKMGIDAKVIQAGLFNTTSTAQDRREML-KEIMR 596
K+ +R S+ +E+ ++L + Q ++ +I S R+ + KE
Sbjct: 1478 KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 1537
Query: 597 RGTSSLGTDVPSEREINRLAARSDE-EFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYS 655
G S + E E + +RS + + L K + R K + R P S
Sbjct: 1538 EGEES-EEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGSRRRPSRGSRAKP--VVS 1594
Query: 656 APDNKEEQKGFEKGFGHE 673
D++EEQ+ G G E
Sbjct: 1595 DDDSEEEQEEDRSGSGSE 1612
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 925 (330.7 bits), Expect = 6.3e-176, Sum P(2) = 6.3e-176
Identities = 178/331 (53%), Positives = 233/331 (70%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
L G + Y + H++ E+V +Q L+ G L+ YQ++GL+W++SL+NNNLNGILADEMGL
Sbjct: 716 LARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGL 775
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKTIQTIALI YL+E+K + GP +I+ P + L NW EF WAPS+ V Y G P R+A
Sbjct: 776 GKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA 835
Query: 205 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ +
Sbjct: 836 FVPQLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 893
Query: 265 IQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQ 322
+ RRLLLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE
Sbjct: 894 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET 953
Query: 323 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD- 381
+LIIRRLH V+RPF+LRR K EVE LP K + ++KCDMSA Q+V Y+ + G + D
Sbjct: 954 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1013
Query: 382 -----TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 1014 SEKDKKGKGGTKTLMNTIMQLRKICNHPYMF 1044
Score = 825 (295.5 bits), Expect = 6.3e-176, Sum P(2) = 6.3e-176
Identities = 186/388 (47%), Positives = 248/388 (63%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF------VGEY-----NMWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F E+ + + ++ RASGKFELLDR
Sbjct: 1020 GKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDR 1079
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + H+VLLF QMT LM I+E Y FK+LRLDG+TK E+RG LLK FN P S
Sbjct: 1080 ILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGS 1139
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ+ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1140 EYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1199
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ D VP +
Sbjct: 1200 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDE 1259
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR++E + RLME+ E+P W E +
Sbjct: 1260 TVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1319
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG--QDIS-----KLSTRGKR 716
+ EK FG G R RKEV Y+D+L++ QW+KA+E G ++I K S+R ++
Sbjct: 1320 EEEEKMFGR------GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRK 1373
Query: 717 REYLPSEGNESASNSTGAEKKNLDMKNE 744
R+ G + + ST + K+ + K +
Sbjct: 1374 RD--SDAGPSTPTTSTRSRDKDDESKKQ 1399
Score = 60 (26.2 bits), Expect = 4.1e-95, Sum P(2) = 4.1e-95
Identities = 55/255 (21%), Positives = 104/255 (40%)
Query: 549 VSVGSIEEVILE-RAKQKMGIDAKVIQAGLFN-TTST-AQDRREMLKEIMRRGTSSLGTD 605
+ G++EE+ E R K+ + AG TTST ++D+ + K+ +RG
Sbjct: 1351 IEEGTLEEIEEEVRQKKSSRKRKRDSDAGPSTPTTSTRSRDKDDESKKQKKRGRPPAEKL 1410
Query: 606 VPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKG 665
P+ + + + + ++ R+ E + +L E+PE+ + +K
Sbjct: 1411 SPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVF-IQLPSRKELPEYYELIRKPVDFKKI 1469
Query: 666 FEKGFGHESSSITGKRKRKEVVYADTLS-DLQWMKAVENGQDISKL--STRGKRREYLPS 722
E+ H+ S+ K ++ + + +L+ E+ + + S R K + S
Sbjct: 1470 KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 1529
Query: 723 EGNESASNSTG----AEKKNLDMKNEIFPLASEGTSEDTFGSAPKR-LRFERRNSESSDI 777
EG ES G +E ++ +K +I L + ++D +R R R SD
Sbjct: 1530 EGEESEEEEEGEEEGSESESRSVKVKI-KLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD 1588
Query: 778 QSVEKSEHKGVQGSG 792
S E+ E GSG
Sbjct: 1589 DSEEEQEEDR-SGSG 1602
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 932 (333.1 bits), Expect = 8.3e-176, Sum P(2) = 8.3e-176
Identities = 178/328 (54%), Positives = 235/328 (71%)
Query: 88 GQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKT 147
G + Y + H+I E+V +Q +LL G L+ YQL+GL+WM+SL+NNNLNGILADEMGLGKT
Sbjct: 671 GSQSYYTVAHAITERVEKQSSLLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKT 730
Query: 148 IQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE 207
IQTIALI YL+E+K + GP++I+ P + L NW EF WAPS+ + Y G P R+++
Sbjct: 731 IQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVP 790
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ- 266
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ + +
Sbjct: 791 QLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 848
Query: 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLI 325
RR+LLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE +LI
Sbjct: 849 RRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILI 908
Query: 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD---- 381
IRRLH V+RPF+LRR K EVE LP K + ++KCDMSA QK+ Y+ + G + D
Sbjct: 909 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 968
Query: 382 --TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 969 DKKGKGGAKTLMNTIMQLRKICNHPYMF 996
Score = 815 (292.0 bits), Expect = 8.3e-176, Sum P(2) = 8.3e-176
Identities = 179/373 (47%), Positives = 239/373 (64%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF----------VGEYN-MWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F +G N + E+ RASGKFELLDR
Sbjct: 972 GKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDR 1031
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + HRVLLF QMT LM I+E Y +F +LRLDG+TK+E+R LLK+FN P S
Sbjct: 1032 ILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGS 1091
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1092 QYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1151
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ + D VP +
Sbjct: 1152 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDE 1211
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR+++ + RLME+ E+P W E +
Sbjct: 1212 TLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1271
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG-----QDISKLSTRGKRRE 718
+ EK FG G R+R++V Y+D L++ QW++A+E+G ++ +L R +RR
Sbjct: 1272 EEEEKIFGR------GSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRN 1325
Query: 719 YLPSEGNESASNS 731
G E +
Sbjct: 1326 VDKDSGKEDGEKA 1338
Score = 48 (22.0 bits), Expect = 8.8e-95, Sum P(2) = 8.8e-95
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEV 686
E+ ++E E+ + E NK+++K EKG G + S + K K V
Sbjct: 1466 EESEDESNDDEDEDDEEESESESKSVKVKIKLNKKDEKSREKGKGKKRQS---RAKAKPV 1522
Query: 687 VYADTLSD 694
V +D SD
Sbjct: 1523 V-SDDDSD 1529
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 932 (333.1 bits), Expect = 3.4e-175, Sum P(2) = 3.4e-175
Identities = 178/328 (54%), Positives = 234/328 (71%)
Query: 88 GQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKT 147
G + Y + H+I E+V +Q LL G L+ YQL+GL+WM+SL+NNNLNGILADEMGLGKT
Sbjct: 704 GSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKT 763
Query: 148 IQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE 207
IQTIALI YL+E+K + GP++I+ P + L NW EF WAPS+ + Y G P R+++
Sbjct: 764 IQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVP 823
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ- 266
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ + +
Sbjct: 824 QLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 881
Query: 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLI 325
RR+LLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE +LI
Sbjct: 882 RRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILI 941
Query: 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD---- 381
IRRLH V+RPF+LRR K EVE LP K + ++KCDMSA QK+ Y+ + G + D
Sbjct: 942 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 1001
Query: 382 --TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 1002 DKKGKGGAKTLMNTIMQLRKICNHPYMF 1029
Score = 808 (289.5 bits), Expect = 3.4e-175, Sum P(2) = 3.4e-175
Identities = 176/359 (49%), Positives = 236/359 (65%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF----------VGEYN-MWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F +G N + E+ RASGKFELLDR
Sbjct: 1005 GKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDR 1064
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + HRVLLF QMT LM I+E Y +F +LRLDG+TK+E+R LLK+FN P S
Sbjct: 1065 ILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGS 1124
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ ADTV+IFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1125 QYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1184
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ + D VP +
Sbjct: 1185 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDE 1244
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR+++ + RLME+ E+P W E +
Sbjct: 1245 TLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1304
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG-----QDISKLSTRGKRR 717
+ EK FG G R+R++V Y+D L++ QW++A+E+G ++ +L R +RR
Sbjct: 1305 EEEEKIFGR------GSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRR 1357
Score = 41 (19.5 bits), Expect = 3.6e-94, Sum P(2) = 3.6e-94
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPE 651
E+M+EE R K+ R R ++ V E
Sbjct: 1342 EEMEEEVRLKKRKRRRNVDKDPVKE 1366
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 925 (330.7 bits), Expect = 6.9e-175, Sum P(3) = 6.9e-175
Identities = 178/331 (53%), Positives = 233/331 (70%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
L G + Y + H++ E+V +Q L+ G L+ YQ++GL+W++SL+NNNLNGILADEMGL
Sbjct: 724 LARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGL 783
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKTIQTIALI YL+E+K + GP +I+ P + L NW EF WAPS+ V Y G P R+A
Sbjct: 784 GKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA 843
Query: 205 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ +
Sbjct: 844 FVPQLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 901
Query: 265 IQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQ 322
+ RRLLLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE
Sbjct: 902 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET 961
Query: 323 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD- 381
+LIIRRLH V+RPF+LRR K EVE LP K + ++KCDMSA Q+V Y+ + G + D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 382 -----TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 1022 SEKDKKGKGGTKTLMNTIMQLRKICNHPYMF 1052
Score = 648 (233.2 bits), Expect = 6.9e-175, Sum P(3) = 6.9e-175
Identities = 133/224 (59%), Positives = 163/224 (72%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF------VGEY-----NMWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F E+ + + ++ RASGKFELLDR
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDR 1087
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + H+VLLF QMT LM I+E Y FK+LRLDG+TK E+RG LLK FN P S
Sbjct: 1088 ILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGS 1147
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ+ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1148 EYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1207
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIM 595
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+
Sbjct: 1208 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL 1251
Score = 194 (73.4 bits), Expect = 6.9e-175, Sum P(3) = 6.9e-175
Identities = 52/154 (33%), Positives = 86/154 (55%)
Query: 605 DVPSEREINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNK 660
+VP + +N++ AR +EEF LF +MD +RR++E + RLME+ E+P W
Sbjct: 1295 EVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEV 1354
Query: 661 EE---QKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG--QDIS-----KL 710
E ++ EK FG G R RKEV Y+D+L++ QW+KA+E G ++I K
Sbjct: 1355 ERLTCEEEEEKMFGR------GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKK 1408
Query: 711 STRGKRREYLPSEGNESASNSTGAEKKNLDMKNE 744
S+R ++R+ G+ + + ST + K+ + K +
Sbjct: 1409 SSRKRKRD--SDAGSSTPTTSTRSRDKDDESKKQ 1440
Score = 61 (26.5 bits), Expect = 4.0e-95, Sum P(2) = 4.0e-95
Identities = 55/255 (21%), Positives = 104/255 (40%)
Query: 549 VSVGSIEEVILE-RAKQKMGIDAKVIQAGLFN-TTST-AQDRREMLKEIMRRGTSSLGTD 605
+ G++EE+ E R K+ + AG TTST ++D+ + K+ +RG
Sbjct: 1392 IEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKL 1451
Query: 606 VPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKG 665
P+ + + + + ++ R+ E + +L E+PE+ + +K
Sbjct: 1452 SPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVF-IQLPSRKELPEYYELIRKPVDFKKI 1510
Query: 666 FEKGFGHESSSITGKRKRKEVVYADTLS-DLQWMKAVENGQDISKL--STRGKRREYLPS 722
E+ H+ S+ K ++ + + +L+ E+ + + S R K + S
Sbjct: 1511 KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 1570
Query: 723 EGNESASNSTG----AEKKNLDMKNEIFPLASEGTSEDTFGSAPKR-LRFERRNSESSDI 777
EG ES G +E ++ +K +I L + ++D +R R R SD
Sbjct: 1571 EGEESEEEEEGEEEGSESESRSVKVKI-KLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD 1629
Query: 778 QSVEKSEHKGVQGSG 792
S E+ E GSG
Sbjct: 1630 DSEEEQEEDR-SGSG 1643
Score = 48 (22.0 bits), Expect = 9.3e-94, Sum P(2) = 9.3e-94
Identities = 45/280 (16%), Positives = 111/280 (39%)
Query: 518 FDSDWNPQMDQQAED-----RAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM-GIDAK 571
FD +D++ E+ R R+ ++ E+ +++ +E + E ++KM G ++
Sbjct: 1313 FDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSR 1372
Query: 572 VIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDE 631
+ ++ + T ++ LK I GT + +++ +R R +
Sbjct: 1373 HRKEVDYSDSLT---EKQWLKAI-EEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTST 1428
Query: 632 ERRQKENYRSRLMEDHEVPEWAYSA-PDN--KEEQKGFEKGFGHESSSITGKRKRKEVVY 688
R K++ + + P S P N K+ +K + ++ SS +G++ + +
Sbjct: 1429 RSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSS-SGRQLSEVFIQ 1487
Query: 689 ADTLSDL-QWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFP 747
+ +L ++ + + D K+ R + +Y E + +++ +
Sbjct: 1488 LPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLI- 1546
Query: 748 LASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHKG 787
+ F S +++ E +SE + + E+ E +G
Sbjct: 1547 YEDSIVLQSVFTSVRQKIEKED-DSEGEESEEEEEGEEEG 1585
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 925 (330.7 bits), Expect = 9.7e-175, Sum P(2) = 9.7e-175
Identities = 178/331 (53%), Positives = 233/331 (70%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
L G + Y + H++ E+V +Q L+ G L+ YQ++GL+W++SL+NNNLNGILADEMGL
Sbjct: 724 LARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGL 783
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKTIQTIALI YL+E+K + GP +I+ P + L NW EF WAPS+ V Y G P R+A
Sbjct: 784 GKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA 843
Query: 205 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ +
Sbjct: 844 FVPQLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 901
Query: 265 IQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQ 322
+ RRLLLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE
Sbjct: 902 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET 961
Query: 323 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD- 381
+LIIRRLH V+RPF+LRR K EVE LP K + ++KCDMSA Q+V Y+ + G + D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 382 -----TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 1022 SEKDKKGKGGTKTLMNTIMQLRKICNHPYMF 1052
Score = 814 (291.6 bits), Expect = 9.7e-175, Sum P(2) = 9.7e-175
Identities = 186/392 (47%), Positives = 249/392 (63%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF------VGEY-----NMWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F E+ + + ++ RASGKFELLDR
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDR 1087
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + H+VLLF QMT LM I+E Y FK+LRLDG+TK E+RG LLK FN P S
Sbjct: 1088 ILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGS 1147
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ+ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1148 EYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1207
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ D VP +
Sbjct: 1208 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDE 1267
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR++E + RLME+ E+P W E +
Sbjct: 1268 TVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1327
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMK----AVENG--QDIS-----KLST 712
+ EK FG G R RKEV Y+D+L++ QW+K A+E G ++I K S+
Sbjct: 1328 EEEEKMFGR------GSRHRKEVDYSDSLTEKQWLKQLKAAIEEGTLEEIEEEVRQKKSS 1381
Query: 713 RGKRREYLPSEGNESASNSTGAEKKNLDMKNE 744
R ++R+ G+ + + ST + K+ + K +
Sbjct: 1382 RKRKRD--SEAGSSTPTTSTRSRDKDEESKKQ 1411
Score = 65 (27.9 bits), Expect = 1.3e-95, Sum P(2) = 1.3e-95
Identities = 56/255 (21%), Positives = 105/255 (41%)
Query: 549 VSVGSIEEVILE-RAKQKMGIDAKVIQAGLFN-TTST-AQDRREMLKEIMRRGTSSLGTD 605
+ G++EE+ E R K+ + +AG TTST ++D+ E K+ +RG
Sbjct: 1363 IEEGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSRDKDEESKKQKKRGRPPAEKL 1422
Query: 606 VPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKG 665
P+ + + + + ++ R+ E + +L E+PE+ + +K
Sbjct: 1423 SPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVF-IQLPSRKELPEYYELIRKPVDFKKI 1481
Query: 666 FEKGFGHESSSITGKRKRKEVVYADTLS-DLQWMKAVENGQDISKL--STRGKRREYLPS 722
E+ H+ S+ K ++ + + +L+ E+ + + S R K + S
Sbjct: 1482 KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 1541
Query: 723 EGNESASNSTG----AEKKNLDMKNEIFPLASEGTSEDTFGSAPKR-LRFERRNSESSDI 777
EG ES G +E ++ +K +I L + ++D +R R R SD
Sbjct: 1542 EGEESEEEEEGEEEGSESESRSVKVKI-KLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD 1600
Query: 778 QSVEKSEHKGVQGSG 792
S E+ E GSG
Sbjct: 1601 DSDEEQEEDR-SGSG 1614
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 882 (315.5 bits), Expect = 2.0e-173, Sum P(2) = 2.0e-173
Identities = 170/303 (56%), Positives = 218/303 (71%)
Query: 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172
G L+ YQ++GL+W++SL+NNNLNGILADEMGLGKTIQTIALI YL+E+K + GP +I+ P
Sbjct: 4 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 63
Query: 173 KAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY 232
+ L NW EF WAPS+ V Y G P R+A + S G+FNVL+T Y+ I++D+
Sbjct: 64 LSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRS--GKFNVLLTTYEYIIKDKHI 121
Query: 233 LKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ-RRLLLTGTPIQNSLQELWSLLNFLL 291
L K++W YMIVDEGHR+KNH C L + ++ + + RRLLLTGTP+QN L ELW+LLNFLL
Sbjct: 122 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLL 181
Query: 292 PTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLP 350
PTIF S FE+WFNAPF G+ V L +EE +LIIRRLH V+RPF+LRR K EVE LP
Sbjct: 182 PTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLP 241
Query: 351 GKSQVILKCDMSAWQKVYYQQVTDVGRVGLD------TGTGKSKSLQNLSMQLRKCCNHP 404
K + ++KCDMSA Q+V Y+ + G + D G G +K+L N MQLRK CNHP
Sbjct: 242 EKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHP 301
Query: 405 YLF 407
Y+F
Sbjct: 302 YMF 304
Score = 825 (295.5 bits), Expect = 2.0e-173, Sum P(2) = 2.0e-173
Identities = 186/388 (47%), Positives = 248/388 (63%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF------VGEY-----NMWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F E+ + + ++ RASGKFELLDR
Sbjct: 280 GKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDR 339
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + H+VLLF QMT LM I+E Y FK+LRLDG+TK E+RG LLK FN P S
Sbjct: 340 ILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGS 399
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ+ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 400 EYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 459
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ D VP +
Sbjct: 460 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDE 519
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR++E + RLME+ E+P W E +
Sbjct: 520 TVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 579
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG--QDIS-----KLSTRGKR 716
+ EK FG G R RKEV Y+D+L++ QW+KA+E G ++I K S+R ++
Sbjct: 580 EEEEKMFGR------GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRK 633
Query: 717 REYLPSEGNESASNSTGAEKKNLDMKNE 744
R+ G + + ST + K+ + K +
Sbjct: 634 RD--SDAGPSTPTTSTRSRDKDDESKKQ 659
Score = 60 (26.2 bits), Expect = 1.3e-92, Sum P(2) = 1.3e-92
Identities = 55/255 (21%), Positives = 104/255 (40%)
Query: 549 VSVGSIEEVILE-RAKQKMGIDAKVIQAGLFN-TTST-AQDRREMLKEIMRRGTSSLGTD 605
+ G++EE+ E R K+ + AG TTST ++D+ + K+ +RG
Sbjct: 611 IEEGTLEEIEEEVRQKKSSRKRKRDSDAGPSTPTTSTRSRDKDDESKKQKKRGRPPAEKL 670
Query: 606 VPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKG 665
P+ + + + + ++ R+ E + +L E+PE+ + +K
Sbjct: 671 SPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVF-IQLPSRKELPEYYELIRKPVDFKKI 729
Query: 666 FEKGFGHESSSITGKRKRKEVVYADTLS-DLQWMKAVENGQDISKL--STRGKRREYLPS 722
E+ H+ S+ K ++ + + +L+ E+ + + S R K + S
Sbjct: 730 KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 789
Query: 723 EGNESASNSTG----AEKKNLDMKNEIFPLASEGTSEDTFGSAPKR-LRFERRNSESSDI 777
EG ES G +E ++ +K +I L + ++D +R R R SD
Sbjct: 790 EGEESEEEEEGEEEGSESESRSVKVKI-KLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD 848
Query: 778 QSVEKSEHKGVQGSG 792
S E+ E GSG
Sbjct: 849 DSEEEQEEDR-SGSG 862
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 925 (330.7 bits), Expect = 1.8e-172, Sum P(3) = 1.8e-172
Identities = 178/331 (53%), Positives = 233/331 (70%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
L G + Y + H++ E+V +Q L+ G L+ YQ++GL+W++SL+NNNLNGILADEMGL
Sbjct: 724 LARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGL 783
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKTIQTIALI YL+E+K + GP +I+ P + L NW EF WAPS+ V Y G P R+A
Sbjct: 784 GKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA 843
Query: 205 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ +
Sbjct: 844 FVPQLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 901
Query: 265 IQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQ 322
+ RRLLLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE
Sbjct: 902 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET 961
Query: 323 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD- 381
+LIIRRLH V+RPF+LRR K EVE LP K + ++KCDMSA Q+V Y+ + G + D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 382 -----TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQLRK CNHPY+F
Sbjct: 1022 SEKDKKGKGGTKTLMNTIMQLRKICNHPYMF 1052
Score = 648 (233.2 bits), Expect = 1.8e-172, Sum P(3) = 1.8e-172
Identities = 133/224 (59%), Positives = 163/224 (72%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF------VGEY-----NMWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F E+ + + ++ RASGKFELLDR
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDR 1087
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + H+VLLF QMT LM I+E Y FK+LRLDG+TK E+RG LLK FN P S
Sbjct: 1088 ILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGS 1147
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ+ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1148 EYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1207
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIM 595
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+
Sbjct: 1208 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL 1251
Score = 172 (65.6 bits), Expect = 1.8e-172, Sum P(3) = 1.8e-172
Identities = 42/110 (38%), Positives = 64/110 (58%)
Query: 605 DVPSEREINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNK 660
+VP + +N++ AR +EEF LF +MD +RR++E + RLME+ E+P W
Sbjct: 1295 EVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEV 1354
Query: 661 EE---QKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDI 707
E ++ EK FG G R RKEV Y+D+L++ QW+K + G+DI
Sbjct: 1355 ERLTCEEEEEKMFGR------GSRHRKEVDYSDSLTEKQWLKKI-TGKDI 1397
Score = 63 (27.2 bits), Expect = 2.9e-95, Sum P(2) = 2.9e-95
Identities = 36/166 (21%), Positives = 78/166 (46%)
Query: 518 FDSDWNPQMDQQAED-----RAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM-GIDAK 571
FD +D++ E+ R R+ ++ E+ +++ +E + E ++KM G ++
Sbjct: 1313 FDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSR 1372
Query: 572 VIQAGLFNTTSTAQDRREMLKEIMRRG----TSSLGTDVPSEREIN--RLAARSDEEFWL 625
+ ++ + T ++ LK+I + SS+ + +R + A+++ EE L
Sbjct: 1373 HRKEVDYSDSLT---EKQWLKKITGKDIHDTASSVARGLQFQRGLQFCTRASKAIEEGTL 1429
Query: 626 FEKMDEERRQKENYRSRLMEDH---EVPEWAYSAPDNKEEQKGFEK 668
E+++EE RQK++ R R + P + + D +E K +K
Sbjct: 1430 -EEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKK 1474
Score = 61 (26.5 bits), Expect = 4.6e-95, Sum P(2) = 4.6e-95
Identities = 55/255 (21%), Positives = 104/255 (40%)
Query: 549 VSVGSIEEVILE-RAKQKMGIDAKVIQAGLFN-TTST-AQDRREMLKEIMRRGTSSLGTD 605
+ G++EE+ E R K+ + AG TTST ++D+ + K+ +RG
Sbjct: 1424 IEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKL 1483
Query: 606 VPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKG 665
P+ + + + + ++ R+ E + +L E+PE+ + +K
Sbjct: 1484 SPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVF-IQLPSRKELPEYYELIRKPVDFKKI 1542
Query: 666 FEKGFGHESSSITGKRKRKEVVYADTLS-DLQWMKAVENGQDISKL--STRGKRREYLPS 722
E+ H+ S+ K ++ + + +L+ E+ + + S R K + S
Sbjct: 1543 KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 1602
Query: 723 EGNESASNSTG----AEKKNLDMKNEIFPLASEGTSEDTFGSAPKR-LRFERRNSESSDI 777
EG ES G +E ++ +K +I L + ++D +R R R SD
Sbjct: 1603 EGEESEEEEEGEEEGSESESRSVKVKI-KLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDD 1661
Query: 778 QSVEKSEHKGVQGSG 792
S E+ E GSG
Sbjct: 1662 DSEEEQEEDR-SGSG 1675
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 918 (328.2 bits), Expect = 8.9e-172, Sum P(2) = 8.9e-172
Identities = 176/326 (53%), Positives = 230/326 (70%)
Query: 90 RQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQ 149
+ Y H++ E+V +Q T L G L+ YQ++GL+WM+SL+NNNLNGILADEMGLGKTIQ
Sbjct: 701 QSYYGVAHAVIERVDKQSTFLINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQ 760
Query: 150 TIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEF 209
TI LI YL+E K + GP++I+ P + L NW+ E WAPSI + Y G P R+++ +
Sbjct: 761 TIGLITYLMELKRLNGPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRRSLVPQL 820
Query: 210 FSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ-RR 268
S G+FNVLIT Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ + + RR
Sbjct: 821 RS--GKFNVLITTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 878
Query: 269 LLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLIIR 327
LLLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE +LIIR
Sbjct: 879 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIR 938
Query: 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD------ 381
RLH V+RPF+LRR K EVE LP K + ++KCDMSA QKV Y+ + G + D
Sbjct: 939 RLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDK 998
Query: 382 TGTGKSKSLQNLSMQLRKCCNHPYLF 407
G G +K+L N MQL+K CNHPY+F
Sbjct: 999 KGKGGAKTLMNTIMQLKKICNHPYMF 1024
Score = 792 (283.9 bits), Expect = 8.9e-172, Sum P(2) = 8.9e-172
Identities = 173/357 (48%), Positives = 237/357 (66%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF----------VGEYN-MWRKEEIIRASGKFELLDR 431
G G +K+L N MQL+K CNHPY+F +G N + ++ RASGKFELLDR
Sbjct: 1000 GKGGAKTLMNTIMQLKKICNHPYMFQHIEESFAEHLGFPNGIISGPDLYRASGKFELLDR 1059
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKL+ + HRVLLF QMT LM ILE Y +F +LRLDG+TK+E+R LLK+FN S
Sbjct: 1060 ILPKLKATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAMLLKKFNEEGS 1119
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+FLLSTRAGGLGLNLQ ADTV+IFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1120 QYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1179
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ ++ D VP +
Sbjct: 1180 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNMEEDEVPDDE 1239
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR+++EF LF +MD +RR+++ + RLME+ E+P W E +
Sbjct: 1240 TLNQMIARNEDEFELFMRMDLDRRREDARNPKRKPRLMEEDELPSWILKDDAEVERLTCE 1299
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG--QDISKLSTRGKRRE 718
+ EK FG G R R++V Y+D L++ QW++A+E+G ++I + R KRR+
Sbjct: 1300 EEEEKIFGR------GSRHRRDVDYSDALTEKQWLRAIEDGNLEEIEE-EIRLKRRK 1349
Score = 38 (18.4 bits), Expect = 1.8e-78, Sum P(2) = 1.8e-78
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 367 VYYQQVTDVGRVGLDTGTGKSKS 389
++Y Q+ VG L +G G +S
Sbjct: 89 IHYGQMKGVGMRSLHSGMGPPQS 111
Score = 37 (18.1 bits), Expect = 5.0e-92, Sum P(2) = 5.0e-92
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 532 DRAHRIGQKKEVRVFVLVSVGSIEEVI-LERAKQKMGIDAKV 572
D + + +K+ +R ++ IEE I L+R K++ +D V
Sbjct: 1317 DYSDALTEKQWLRAIEDGNLEEIEEEIRLKRRKRRRHVDKDV 1358
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 1635 (580.6 bits), Expect = 4.8e-170, Sum P(2) = 4.8e-170
Identities = 355/752 (47%), Positives = 485/752 (64%)
Query: 61 GTPRDLHPEEXXXXXXXXXXXXXXLLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQL 120
GTPR PE L + Y H I+EK+TEQPT+L GG+L+ YQ+
Sbjct: 451 GTPRHGSPEVAVENKSDDKAE----LREKTDYYEVAHRIKEKITEQPTILVGGKLKEYQM 506
Query: 121 EGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 180
+GL+WM+SL+NN+LNGILADEMGLGKTIQ+I+L+ YL+E K +I+ P + + NW
Sbjct: 507 KGLEWMVSLYNNHLNGILADEMGLGKTIQSISLVTYLIEKKH-ENKFLIIVPLSTITNWT 565
Query: 181 NEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIY 240
EF WAPSI +VY G +R++++ + G F VL+T Y+ ++R+R L K + +
Sbjct: 566 LEFEKWAPSIKVIVYKGSQQQRRSLQPDI--RYGNFQVLLTTYEYVIRERPMLAKFHYSH 623
Query: 241 MIVDEGHRLKNHECALAKTI-SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVE 299
MI+DEGHR+KN + L++T+ + Y+ + RL+LTGTP+QN+L ELW+LLNF+LP IFNSV+
Sbjct: 624 MIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQNNLPELWALLNFVLPGIFNSVK 683
Query: 300 NFEEWFNAPFKDRG---QVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVI 356
+F++WFN PF + G ++ LT+EE LL+IRRLH V+RPF+LRR K +VEK LP K + +
Sbjct: 684 SFDDWFNTPFANTGAQEKIELTEEESLLVIRRLHKVLRPFLLRRLKKDVEKDLPDKVEKV 743
Query: 357 LKCDMSAWQKVYYQQVTDVGR--VGLDTGTGKS--KSLQNLSMQLRKCCNHPYLFV---G 409
LKC++S Q V YQQ+ VG D G KS K L N MQLRK CNHP++F
Sbjct: 744 LKCNLSGLQYVLYQQMLKHNALFVGADVGGAKSGIKGLNNKIMQLRKICNHPFVFEEVES 803
Query: 410 EYNMWR-KEEII-RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKF 467
N R ++I R SGKFELLDR+LPK +KSGHRVL+F QMT++MDI+E +L+ D K+
Sbjct: 804 VLNSSRLTNDLIWRVSGKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLRWKDMKY 863
Query: 468 LRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMD 527
LRLDGSTK EER +LK FNAPDS YF FLLSTRAGGLGLNLQTADTVIIFD+DWNP D
Sbjct: 864 LRLDGSTKAEERQDMLKVFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQD 923
Query: 528 QQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDR 587
QA+DRAHRIGQK EVR+ L++ S+EEVILERA QK+ ID KVIQAG F+ STA+++
Sbjct: 924 LQAQDRAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGKFDNKSTAEEQ 983
Query: 588 REMLKEIMR---RGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERR-QKENYRSRL 643
LK ++ G + D + E+N + ARS+EE LF MDEER+ +K Y+SRL
Sbjct: 984 EAFLKRLLEADANGADNEENDSLDDDELNEILARSEEEKVLFASMDEERKSEKVPYKSRL 1043
Query: 644 MEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVEN 703
+E E+P A ++ FEK + ++ R +K V Y D LS+ QW+KA+++
Sbjct: 1044 IEKDELP-----AVFTEDISHHFEK----KEKELSKMRDKKRVRYDDGLSEEQWLKAMDD 1094
Query: 704 GQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPK 763
D + + + K + N++ E D+K++ E ED +A
Sbjct: 1095 DNDTVEEAIKRKEERIAKRKRNKAIREGLLEE----DIKDDE---VGEEDDEDFEEAAQP 1147
Query: 764 RLRFERRNSESSDIQSVEKSEHKGVQGSGLNG 795
R R +RR + + ++ + G G+G G
Sbjct: 1148 RKR-QRR--ARTPLPHIDNDDINGDSGNGGGG 1176
Score = 40 (19.1 bits), Expect = 4.8e-170, Sum P(2) = 4.8e-170
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 90 RQYNSAIHSIEEKVTEQPTLLQGGEL 115
+Q N + S+ EKV Q GG +
Sbjct: 425 KQTNQFLDSLTEKVRAQQEEASGGSM 450
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 1657 (588.4 bits), Expect = 5.7e-169, P = 5.7e-169
Identities = 350/704 (49%), Positives = 477/704 (67%)
Query: 92 YNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI 151
Y S HSI+E + EQP LL+GG+L+ YQ++GLQWM+SL+NN LNGILADEMGLGKTIQTI
Sbjct: 1688 YYSKAHSIQEDIIEQPALLEGGKLKPYQMQGLQWMVSLYNNKLNGILADEMGLGKTIQTI 1747
Query: 152 ALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS 211
AL++YL+E K GP ++V P + L NW EFS WAP + V+Y G RK+ EEF +
Sbjct: 1748 ALVSYLIEVKKNNGPFLVVVPLSTLSNWGQEFSKWAPKVKRVLYYGDKPARKSKFEEFIA 1807
Query: 212 ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTI-SGYQIQRRLL 270
G+FN ++T Y+ I++D+ L K++W Y+IVDEGHR+KN+ L+ + + Y + RLL
Sbjct: 1808 P-GQFNAVVTTYEYIIKDKNALSKIKWNYLIVDEGHRMKNYTSKLSIILGTSYSSRYRLL 1866
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLIIRRL 329
LTGTP+QNSL ELW+LLNFLLPTIF+ VE+FE+WFNAPF G+ + + +EEQLLII+RL
Sbjct: 1867 LTGTPLQNSLPELWALLNFLLPTIFDCVEDFEQWFNAPFAQTGEKIEMNEEEQLLIIQRL 1926
Query: 330 HHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVG--RV----GLDTG 383
H V+RPF+LRR K EVE LP K + +LKCDMSA+Q Y + G ++ G D
Sbjct: 1927 HKVLRPFLLRRLKKEVEAQLPDKVEKVLKCDMSAFQAKMYDLIKTKGVSKLASSGGADGN 1986
Query: 384 TGKSKSLQNLSMQLRKCCNHPYLFVG-EYNMWRKEEIIRASGKFELLDRLLPKLRKSGHR 442
+K L+N +QLRK CNHPYLF EYN+ + +IR +GKF+LLDRLLPKL+ +GHR
Sbjct: 1987 PKLAKGLKNTYVQLRKICNHPYLFYDDEYNI--DDNLIRYAGKFDLLDRLLPKLKAAGHR 2044
Query: 443 VLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502
VL+FSQMT+L++ILE++ D+KFLRLDGSTK++ERG LL+ FNAP+S YF+F+LSTRA
Sbjct: 2045 VLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDERGHLLELFNAPNSEYFIFVLSTRA 2104
Query: 503 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 562
GGLGLNLQTADTVIIFDSDWNPQMD QA+DRAHRIGQK+ VRV LV+ S+EE IL RA
Sbjct: 2105 GGLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQKQTVRVLRLVTAHSVEESILARA 2164
Query: 563 KQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRG-TSSLGTD-VPSEREINRLAARSD 620
K +D K+IQAG FN S DR++ML+++M + T+ + VP++ +IN + ARS
Sbjct: 2165 NFKKELDKKIIQAGQFNNKSNRSDRKKMLEDLMTQDETAEMEKQTVPTDSQINEMIARSP 2224
Query: 621 EEFWLFEKMDEERRQ----------KENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGF 670
EEF L+E MD+ER + K+ RL ++ E+P W KE + G + F
Sbjct: 2225 EEFELYENMDKERMEIDQKKWDEAGKKGEAKRLSQEDEIPSWI-----TKEVELGDDLSF 2279
Query: 671 GHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLPSEGNESAS 729
S G K+ D ++LQ K +E+G+ K + E+ + + S+S
Sbjct: 2280 VLNQSIKPGSSKKS----LDLENELQIRKILESGKIKRKTANNNAMISEFFDDDDDGSSS 2335
Query: 730 NSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSE 773
+S+ ++ D +++ P + TS+ S R E++N++
Sbjct: 2336 SSSDSDS---DFESKPTPKRTT-TSDKPKSSKESNNRKEKKNTK 2375
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 1630 (578.8 bits), Expect = 1.4e-167, P = 1.4e-167
Identities = 329/673 (48%), Positives = 459/673 (68%)
Query: 92 YNSAIHSIEEKVTEQPTLLQGGE----LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKT 147
Y + H I+EKV +Q T + GG+ L+ YQ++GL+WM+SL+NNNLNGILADEMGLGKT
Sbjct: 506 YYATAHKIKEKVVKQHTTMGGGDPNLLLKPYQIKGLEWMVSLYNNNLNGILADEMGLGKT 565
Query: 148 IQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE 207
IQTI+L+ YL+E K GP++++ P + L NW NEF+ WAPS+ ++Y G D R+ +
Sbjct: 566 IQTISLVTYLMEVKQNNGPYLVIVPLSTLSNWQNEFAKWAPSVTTIIYKGTKDARRRVEG 625
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQ 266
+ +G FNVL+T Y+ +++++ L K++W YMI+DEGHRLKNH C L ++G+ Q
Sbjct: 626 QI--RKGAFNVLMTTYEYVIKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQ 683
Query: 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLI 325
RLLLTGTP+QN L ELW+LLNFLLP+IF+S FE+WFNAPF G+ V L EE +LI
Sbjct: 684 HRLLLTGTPLQNKLPELWALLNFLLPSIFSSCGTFEQWFNAPFATTGEKVELNQEETMLI 743
Query: 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTG 385
IRRLH V+RPF+LRR K EVE LP K++ ++KCD SA QKV Y+ + + +G
Sbjct: 744 IRRLHKVLRPFLLRRLKKEVESQLPDKTEYVIKCDQSALQKVIYRHMQKGLLLDAKMSSG 803
Query: 386 KSKSLQNLSMQLRKCCNHPYLFVGEYNM----WRKEEI-----IRASGKFELLDRLLPKL 436
++SL N + LRK CNHP+LF + W+ E+ +R +GK ELLDR+LPKL
Sbjct: 804 -ARSLMNTVVHLRKLCNHPFLFPNIEDSCRAYWKVNEVNGTDLMRVAGKLELLDRILPKL 862
Query: 437 RKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMF 496
+ +GHR+L+F QMT +M+I E +L + +LRLDGSTK +ERG LL QFNAP+S F+F
Sbjct: 863 KATGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDLLTQFNAPNSDLFLF 922
Query: 497 LLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEE 556
+LSTRAGGLGLNLQTADTVIIFDSDWNP D QA+DRAHRIGQKKEVRV L++ S+EE
Sbjct: 923 MLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKKEVRVLRLITANSVEE 982
Query: 557 VILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRR-GTSSLGTDVPSEREINRL 615
IL A+ K+ +D KVIQAG F+ ST +R++ML++I++ G +VP + +N++
Sbjct: 983 KILAAARYKLNVDEKVIQAGKFDQRSTGAERKQMLEQIIQADGEEEEEEEVPDDETVNQM 1042
Query: 616 AARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAP-DNKEEQKGFEKGF 670
ARS+EEF +F+ MD +RR++E + + RL+E+HE+P+ D +E ++ E+G
Sbjct: 1043 VARSEEEFNIFQSMDIDRRREEANQLHRKPRLLEEHEIPDDILKLSFDYEEMERAREEGR 1102
Query: 671 GHESSSITGKRKRKEVVYA-DTLSDLQWMKAVE-----NGQDISKLSTRGKRREYLPSEG 724
+ +R+R+EV Y+ D LSD Q+MK VE N Q +++ + KR+ E
Sbjct: 1103 EVVDQTPNQRRRRREVDYSSDLLSDEQFMKQVEEVEDENNQAVAERKKQRKRKMAGLDEN 1162
Query: 725 NESASNSTGAEKK 737
++S + KK
Sbjct: 1163 DDSMDDVVLQHKK 1175
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 1615 (573.6 bits), Expect = 5.4e-166, P = 5.4e-166
Identities = 340/720 (47%), Positives = 473/720 (65%)
Query: 92 YNSAIHSIEEKVTEQPTLLQGG----ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKT 147
Y + H + E++ EQ ++ GG +L+ YQ++GL+WM+SLFNNNLNGILADEMGLGKT
Sbjct: 339 YYTTAHGVREEIKEQHFMMGGGNPSLKLKPYQIKGLEWMVSLFNNNLNGILADEMGLGKT 398
Query: 148 IQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE 207
IQTIA I YL+E K +GP +++ P + +PNW NEF WA ++ + Y G + RK
Sbjct: 399 IQTIAFITYLMEIKKTSGPFLVIVPLSTVPNWQNEFDKWAANVHLIAYKGPKETRKVF-- 456
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQIQ 266
E + G+FNVL+T ++ ++R++ L K++W YMI+DEGHRLKN C L + ++ +Q Q
Sbjct: 457 EPIIKSGKFNVLLTTFEYVIREKALLGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQ 516
Query: 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLI 325
RRLL+TGTP+QN L ELW+LLNFLLP+IF+S FE+WFNAPF G+ V LT EE +LI
Sbjct: 517 RRLLITGTPLQNKLPELWALLNFLLPSIFSSCSTFEQWFNAPFATTGEKVELTQEETMLI 576
Query: 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTG 385
IRRLH V+RPF+LRR K EVE LP K + +++CDMSA QKV Y+ + + T TG
Sbjct: 577 IRRLHKVLRPFLLRRLKKEVESELPDKMEFVVRCDMSALQKVLYKHMQKGLLLDGKTNTG 636
Query: 386 KSKSLQNLSMQLRKCCNHPYLF--VGEY--NMWRKE-----EIIRASGKFELLDRLLPKL 436
SKSL+N + LRK CNHP+LF V E N W ++ R SGK ELL R+LPKL
Sbjct: 637 -SKSLRNTMIHLRKLCNHPFLFENVEESCRNFWDARFISAVDLYRVSGKLELLSRILPKL 695
Query: 437 RKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMF 496
+ +GHRVL+F QMT +M I+E +L ++LRLDGSTK +ERG LL +FNAP+S YF+F
Sbjct: 696 QATGHRVLMFFQMTSMMTIVEDFLAGGTIQYLRLDGSTKPDERGALLDKFNAPNSEYFLF 755
Query: 497 LLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEE 556
+LSTRAGGLGLNLQTADTVIIFDSDWNP D QA+DRAHRIGQK EVRVF L++ S+EE
Sbjct: 756 MLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKAEVRVFRLITANSVEE 815
Query: 557 VILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMR-RGTSSLGTDVPSEREINRL 615
IL A+ K+ +D KVIQAG F+ ST +RRE+L+ I++ S +VP++ +IN +
Sbjct: 816 KILAAARYKLNVDEKVIQAGKFDNRSTGAERREILENIIKTENESEEDEEVPNDEDINDI 875
Query: 616 AARSDEEFWLFEKMDEER---RQKENYRSRLMEDHEVPEWAYSAPDNKEE-QKGFEKGFG 671
+RS+EEF LF+KMD+ER Q + + RL+ + E+P A D + +K E+G
Sbjct: 876 LSRSEEEFELFQKMDQERFENEQAQKAKPRLVGEDEIPRDILRAADETDYIEKAKEEGRV 935
Query: 672 HESSSITGKRK-RKEVVY-ADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESAS 729
+ G R+ R+EV Y ADT+SD ++++ + + D + T + P + S S
Sbjct: 936 PYLEVMPGSRRTRREVDYSADTMSDDKFLEKLFDEDDTTSARTEEEPNPAQPGPSSVSIS 995
Query: 730 NSTGAE-KKNLDMKNEIFPLASEGTSEDTF--GSAPKRLRFERRNSESSDIQSVEKSEHK 786
+ + +K++ + + P + T G K+ + R S+S D ++ +H+
Sbjct: 996 LESSCDTQKDIKVDDVPAPPLTFKVPRLTIKLGGDEKKRKHNRSESDSDDNSLKKEKKHR 1055
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 1604 (569.7 bits), Expect = 7.9e-165, P = 7.9e-165
Identities = 331/693 (47%), Positives = 472/693 (68%)
Query: 92 YNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI 151
YN A H I+E + +QP++L GG L+ YQ++GLQWM+SLFNN+LNGILADEMGLGKTIQTI
Sbjct: 745 YNVA-HRIKEDIKKQPSILVGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTI 803
Query: 152 ALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS 211
+L+ YL E K + GP++++ P + L NW +EF+ WAP++ + + G P+ERKA + +
Sbjct: 804 SLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKI-- 861
Query: 212 ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQIQRRLL 270
G F+V++T ++ I+++R L KV+W++MI+DEGHR+KN + L+ T++ Y RL+
Sbjct: 862 RAGEFDVVLTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLI 921
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG---QVALTDEEQLLIIR 327
LTGTP+QN+L ELW+LLNF+LP IFNSV++F+EWFN PF + G ++ L++EE LL+IR
Sbjct: 922 LTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIR 981
Query: 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKS 387
RLH V+RPF+LRR K +VEK LP K + ++KC MSA Q++ YQQ+ R+ + K
Sbjct: 982 RLHKVLRPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKK 1041
Query: 388 ----KSLQNLSMQLRKCCNHPYLFV---GEYNMWRK--EEIIRASGKFELLDRLLPKLRK 438
+ N MQL+K CNHP++F + N R+ ++I R +GKFELLDR+LPKL+
Sbjct: 1042 MVGLRGFNNQIMQLKKICNHPFVFEEVEDQINPTRETNDDIWRVAGKFELLDRILPKLKA 1101
Query: 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 498
+GHRVL+F QMT++MDI+E +L+ + K+LRLDG TK++ER LL+ FNAPDS Y F+L
Sbjct: 1102 TGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLRLFNAPDSEYLCFIL 1161
Query: 499 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVI 558
STRAGGLGLNLQTADTVIIFD+DWNP D QA+DRAHRIGQK EVR+ L++ S+EEVI
Sbjct: 1162 STRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVI 1221
Query: 559 LERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIM-----RRGTSSLGTDVPSE---R 610
LERA +K+ ID KVIQAG F+ ST++++ +L+ ++ RR G + E
Sbjct: 1222 LERAYKKLDIDGKVIQAGKFDNKSTSEEQEALLRSLLDAEEERRKKRESGVEEEEELKDS 1281
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKEN---YRSRLMEDHEVPEWAYSAPDNKEEQKGFE 667
EIN + AR+DEE + +MDE+R +KE +SRL+E E+P+ YS D E K E
Sbjct: 1282 EINEILARNDEEMAVLTRMDEDRSKKEEELGVKSRLLEKSELPD-IYSR-DIGAELKREE 1339
Query: 668 KGFGHESSSI---TGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEG 724
ES+++ G R+RK Y D +S+ QW++ E D + + + R++ E
Sbjct: 1340 S----ESAAVYNGRGARERKTATYNDNMSEEQWLRQFEVSDD--EKNDKQARKQRTKKED 1393
Query: 725 NESASNSTGAEK-KNLDMKNEIFPLASEGTSED 756
A + G K +N+D N+ P + ++ED
Sbjct: 1394 KSEAIDGNGEIKGENIDADND-GPRINNISAED 1425
Score = 170 (64.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 68/239 (28%), Positives = 112/239 (46%)
Query: 580 TTSTAQDR--REMLK-EIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLFEKMDEER 633
+TS Q+ R +L E RR G + E EIN + AR+DEE + +MDE+R
Sbjct: 1245 STSEEQEALLRSLLDAEEERRKKRESGVEEEEELKDSEINEILARNDEEMAVLTRMDEDR 1304
Query: 634 RQKEN---YRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSI---TGKRKRKEVV 687
+KE +SRL+E E+P+ YS D E K E ES+++ G R+RK
Sbjct: 1305 SKKEEELGVKSRLLEKSELPD-IYSR-DIGAELKREES----ESAAVYNGRGARERKTAT 1358
Query: 688 YADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEK-KNLDMKNE-- 744
Y D +S+ QW++ E D + + + R++ E A + G K +N+D N+
Sbjct: 1359 YNDNMSEEQWLRQFEVSDD--EKNDKQARKQRTKKEDKSEAIDGNGEIKGENIDADNDGP 1416
Query: 745 -IFPLASE-------GTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHKGVQGSGLNG 795
I +++E ++D F S ++ R + ++ E SE ++ S + G
Sbjct: 1417 RINNISAEDRADTDLAMNDDDFLSKKRKAGRPRGRPKKVKLEGSENSEPPALESSPVTG 1475
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 1599 (567.9 bits), Expect = 2.7e-164, P = 2.7e-164
Identities = 334/677 (49%), Positives = 458/677 (67%)
Query: 87 EGQRQ--YNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
EG+R+ Y + H I+E++TEQP++L GG L+ YQ++GLQWM+SL+NNNLNGILADEMGL
Sbjct: 507 EGRRKIDYYAVAHRIKEEITEQPSILVGGTLKEYQMKGLQWMISLYNNNLNGILADEMGL 566
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKTIQTI+LI +++E K GP +++ P + L NW EF WAPS++ +VY G P+ RK
Sbjct: 567 GKTIQTISLITHIIERKRNNGPFLVIVPLSTLTNWNLEFEKWAPSVSRIVYKGPPNARKQ 626
Query: 205 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
++ G F VL+T Y+ I++DR L K++W +MIVDEGHR+KN + L+ T+S Y
Sbjct: 627 QQQNI--RWGNFQVLLTTYEYIIKDRPILSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYY 684
Query: 265 IQR-RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG---QVALTDE 320
R RL+LTGTP+QN+L ELW+LLNF+LP IF SV++F+EWFN PF + G ++ LT+E
Sbjct: 685 TSRYRLILTGTPLQNNLPELWALLNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMDLTEE 744
Query: 321 EQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGL 380
EQLL+IRRLH V+RPF+LRR K +VEK LP K + ++KC SA Q +Q+ ++ +
Sbjct: 745 EQLLVIRRLHKVLRPFLLRRLKKDVEKDLPDKQERVIKCRFSALQAKLNKQLATHNKMVV 804
Query: 381 DTGTGKS---KSLQNLSMQLRKCCNHPYLFV---GEYNMWR-KEEII-RASGKFELLDRL 432
G G + L N+ MQLRK CNHP++F + N R ++I R +GKFELLDR+
Sbjct: 805 SDGKGGKVGMRGLSNMLMQLRKLCNHPFVFEQVEDQVNPGRGTNDLIWRTAGKFELLDRI 864
Query: 433 LPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSP 492
LPK + +GHRVL+F QMT++M+I+E +L+L K+LRLDGSTK+++R LLK FNAPDS
Sbjct: 865 LPKFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLKLFNAPDSE 924
Query: 493 YFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552
YF FLLSTRAGGLGLNLQTADTVIIFDSDWNP D QA+DRAHRIGQK EVR+ L++
Sbjct: 925 YFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRILRLITSN 984
Query: 553 SIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMR--RGTSSLGT-DVPSE 609
S+EE ILERA+ K+ +D KVIQAG F+ ST ++R +L+ ++ GT G D +
Sbjct: 985 SVEEKILERAQFKLDMDGKVIQAGKFDNKSTNEERDALLRTLLETAEGTDQAGDQDEMDD 1044
Query: 610 REINRLAARSDEEFWLFEKMDEERRQKENYRS-----RLMEDHEVPEWAYSAPDNKEEQK 664
++N + ARSDEE +F++MD ER++ Y RLM + E+PE Y +N ++
Sbjct: 1045 DDLNNIMARSDEELAVFQRMDRERQKTCPYGPGHKLPRLMGESELPE-IYVTEENPVAEE 1103
Query: 665 GFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQD-----ISKLSTR-GKRRE 718
E E S G R+RK Y D L++ QW+ AV+ D I++ R KRR
Sbjct: 1104 AAEI----ELSG-RGARERKITRYDDGLTEEQWLMAVDADDDTIEDAIARKEARVEKRRS 1158
Query: 719 YLPSEGNESASNSTGAE 735
G ++ + + E
Sbjct: 1159 NKEKRGRKAQGDESSPE 1175
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 1593 (565.8 bits), Expect = 1.2e-163, P = 1.2e-163
Identities = 339/722 (46%), Positives = 465/722 (64%)
Query: 92 YNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI 151
Y H I+EK+ +QP++L GG L+ YQL GL+WM+SL+NN+LNGILADEMGLGKTIQ+I
Sbjct: 447 YYEVAHRIKEKIDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSI 506
Query: 152 ALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS 211
+LI YL E K GP +++ P + + NW EF WAPS+ ++Y G P++R +++ +
Sbjct: 507 SLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQI-- 564
Query: 212 ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQRRLL 270
G F+VL+T Y+ I++D+ L K W +MI+DEGHR+KN + L+ TIS Y + + RL+
Sbjct: 565 RVGNFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLI 624
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG---QVALTDEEQLLIIR 327
LTGTP+QN+L ELW+LLNF+LP IFNS + FE+WFN PF + G ++ LT+EE LLIIR
Sbjct: 625 LTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIR 684
Query: 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT--- 384
RLH V+RPF+LRR K EVEK LP K + ++KC +S Q+ YQQ+ + + GT
Sbjct: 685 RLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAGTEGA 744
Query: 385 --GKSKSLQNLSMQLRKCCNHPYLF---VGEYNMWR--KEEIIRASGKFELLDRLLPKLR 437
G K L N MQLRK CNHP++F G N R + + R +GKFELLDR+LPK +
Sbjct: 745 TKGGIKGLNNKIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFK 804
Query: 438 KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497
SGHRVL+F QMT++MDI+E +L++ D K++RLDGSTKTEER +L FNAPDS YF FL
Sbjct: 805 ASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFL 864
Query: 498 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEV 557
LSTRAGGLGLNLQTADTVIIFD+DWNP D QA+DRAHRIGQK EVR+ L++ S+EEV
Sbjct: 865 LSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEV 924
Query: 558 ILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPS--EREINRL 615
ILERA QK+ ID KVIQAG F+ STA+++ L+ ++ T+ D + E+N
Sbjct: 925 ILERAMQKLDIDGKVIQAGKFDNKSTAEEQEAFLRRLIESETNRDDDDKAELDDDELNDT 984
Query: 616 AARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDN--KEEQKGFEKGFGHE 673
ARS +E LF+K+D+ER +E ++ + VP D K ++ E+ F E
Sbjct: 985 LARSADEKILFDKIDKERMNQERADAKA-QGLRVPPPRLIQLDELPKVFREDIEEHFKKE 1043
Query: 674 SSSITGK-RKRKEVVYADTLSDLQWMKAVENG----QDISKLSTRGKRREYLPSEGN--- 725
S G+ R++K V Y D L++ Q+++AVE+ +D K + R L G
Sbjct: 1044 DSEPLGRIRQKKRVYYDDGLTEEQFLEAVEDDNMSLEDAIKKRREARERRRLRQNGTKEN 1103
Query: 726 --ESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKS 783
E+ N+ A + +L N E T+ D +A + R R + I + E
Sbjct: 1104 EIETLENTPEASETSLIENNSFTAAVDEETNADKETTASRSKRRSSRKKRTISIVTAEDK 1163
Query: 784 EH 785
E+
Sbjct: 1164 EN 1165
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 1548 (550.0 bits), Expect = 6.8e-159, P = 6.8e-159
Identities = 313/637 (49%), Positives = 438/637 (68%)
Query: 92 YNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI 151
YN A H I+E+VT+QP++L GG L+ YQL+GLQWM+SLFNN+LNGILADEMGLGKTIQTI
Sbjct: 759 YNVA-HRIKEEVTKQPSILVGGTLKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTI 817
Query: 152 ALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS 211
+L+ YL+E K + GP +++ P + + NW EF WAPSI + Y G P++RK M+ +
Sbjct: 818 SLLTYLVEVKKIPGPFLVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQHDI-- 875
Query: 212 ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS-GYQIQRRLL 270
G F +++T ++ +++D+ L +++W++MI+DEGHR+KN L++T++ Y RL+
Sbjct: 876 RTGNFQLVLTTFEYVIKDKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLI 935
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG---QVALTDEEQLLIIR 327
LTGTP+QN+L ELW+LLNF+LP IFNSV++F+EWFN PF + G ++ LT+EE LL+IR
Sbjct: 936 LTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETLLVIR 995
Query: 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGL-DTGTGK 386
RLH V+RPF+LRR K +VEK LP K + ++KC SA Q YQQ+ + D G
Sbjct: 996 RLHKVLRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGS 1055
Query: 387 S----KSLQNLSMQLRKCCNHPYLFVGEYNMWR-----KEEIIRASGKFELLDRLLPKLR 437
K+ N MQL+K CNHP+++ N+ ++I R +GKFELLD++LPK +
Sbjct: 1056 VPVTIKNANNQIMQLKKICNHPFVYEEVENLINPNIETNDQIWRVAGKFELLDKVLPKFK 1115
Query: 438 KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497
+GH+VL+F QMT++M+I+E +L+ K++RLDG TK ++R LLK FNAPDS YF FL
Sbjct: 1116 ATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFL 1175
Query: 498 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEV 557
LSTRAGGLGLNLQTADTVIIFD+DWNP D QA+DRAHRIGQK EVR+ L++ S+EE+
Sbjct: 1176 LSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEEM 1235
Query: 558 ILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSL---GTDVPSER---- 610
ILERA +K+ ID KVIQAG F+ STA+++ ML+ ++ + GTD E
Sbjct: 1236 ILERAHKKLEIDGKVIQAGKFDNKSTAEEQEAMLRALIEKEDERRQKGGTDEEEEDLDDD 1295
Query: 611 EINRLAARSDEEFWLFEKMDEER---RQKENYRSRLMEDHEVPEWAYSAPDN--KEEQKG 665
E+N++ AR++ E +F KMDEER + Y SRL + E+PE P+ K+E
Sbjct: 1296 ELNQIIARNENELVVFRKMDEERYLATKNAPYPSRLYTEEELPEIYKIDPEELFKKEDVA 1355
Query: 666 FEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVE 702
E+ +G G R+RK + Y D L++ QW+K +E
Sbjct: 1356 SEE-YGR------GARERKILQYDDNLTEEQWLKKIE 1385
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 1548 (550.0 bits), Expect = 6.8e-159, P = 6.8e-159
Identities = 313/637 (49%), Positives = 438/637 (68%)
Query: 92 YNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI 151
YN A H I+E+VT+QP++L GG L+ YQL+GLQWM+SLFNN+LNGILADEMGLGKTIQTI
Sbjct: 759 YNVA-HRIKEEVTKQPSILVGGTLKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTI 817
Query: 152 ALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS 211
+L+ YL+E K + GP +++ P + + NW EF WAPSI + Y G P++RK M+ +
Sbjct: 818 SLLTYLVEVKKIPGPFLVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQHDI-- 875
Query: 212 ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS-GYQIQRRLL 270
G F +++T ++ +++D+ L +++W++MI+DEGHR+KN L++T++ Y RL+
Sbjct: 876 RTGNFQLVLTTFEYVIKDKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLI 935
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG---QVALTDEEQLLIIR 327
LTGTP+QN+L ELW+LLNF+LP IFNSV++F+EWFN PF + G ++ LT+EE LL+IR
Sbjct: 936 LTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETLLVIR 995
Query: 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGL-DTGTGK 386
RLH V+RPF+LRR K +VEK LP K + ++KC SA Q YQQ+ + D G
Sbjct: 996 RLHKVLRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGS 1055
Query: 387 S----KSLQNLSMQLRKCCNHPYLFVGEYNMWR-----KEEIIRASGKFELLDRLLPKLR 437
K+ N MQL+K CNHP+++ N+ ++I R +GKFELLD++LPK +
Sbjct: 1056 VPVTIKNANNQIMQLKKICNHPFVYEEVENLINPNIETNDQIWRVAGKFELLDKVLPKFK 1115
Query: 438 KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497
+GH+VL+F QMT++M+I+E +L+ K++RLDG TK ++R LLK FNAPDS YF FL
Sbjct: 1116 ATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFL 1175
Query: 498 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEV 557
LSTRAGGLGLNLQTADTVIIFD+DWNP D QA+DRAHRIGQK EVR+ L++ S+EE+
Sbjct: 1176 LSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEEM 1235
Query: 558 ILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSL---GTDVPSER---- 610
ILERA +K+ ID KVIQAG F+ STA+++ ML+ ++ + GTD E
Sbjct: 1236 ILERAHKKLEIDGKVIQAGKFDNKSTAEEQEAMLRALIEKEDERRQKGGTDEEEEDLDDD 1295
Query: 611 EINRLAARSDEEFWLFEKMDEER---RQKENYRSRLMEDHEVPEWAYSAPDN--KEEQKG 665
E+N++ AR++ E +F KMDEER + Y SRL + E+PE P+ K+E
Sbjct: 1296 ELNQIIARNENELVVFRKMDEERYLATKNAPYPSRLYTEEELPEIYKIDPEELFKKEDVA 1355
Query: 666 FEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVE 702
E+ +G G R+RK + Y D L++ QW+K +E
Sbjct: 1356 SEE-YGR------GARERKILQYDDNLTEEQWLKKIE 1385
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 1547 (549.6 bits), Expect = 8.6e-159, P = 8.6e-159
Identities = 322/666 (48%), Positives = 436/666 (65%)
Query: 92 YNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI 151
YN A H+I E VTEQP++L GG+L+ YQL GLQWM+SL+NN+LNGILADEMGLGKTIQTI
Sbjct: 395 YNVA-HNIREVVTEQPSILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTI 453
Query: 152 ALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS 211
+LI +L+E K GP +++ P + L NW EF WAPSI +VY G P RKA+ +
Sbjct: 454 SLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQV-- 511
Query: 212 ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR-RLL 270
F VL+T Y+ I++DR L +++WIYMI+DEGHR+KN + L T++ Y R RL+
Sbjct: 512 RHSNFQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLI 571
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG---QVALTDEEQLLIIR 327
LTGTP+QN+L ELW+LLNF+LP IFNS+++F+EWFN PF + G ++ LT+EE LL+IR
Sbjct: 572 LTGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIR 631
Query: 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGL-DTGTGK 386
RLH V+RPF+LRR K +VE LP K + +++C MS Q+ Y Q+ G + + D GK
Sbjct: 632 RLHKVLRPFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRGK 691
Query: 387 S--KSLQNLSMQLRKCCNHPYLFVG-EYNM----WRKEEIIRASGKFELLDRLLPKLRKS 439
+ K LQN MQL+K CNHP++F E ++ + + + R SGKFELLDR+LPKL +S
Sbjct: 692 TGIKGLQNTVMQLKKICNHPFVFEDVERSIDPTGFNYDMLWRVSGKFELLDRILPKLFRS 751
Query: 440 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 499
GHR+L+F QMT++M+I+E YL +++LRLDGSTK ++R LL FN P + +FLLS
Sbjct: 752 GHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLS 811
Query: 500 TRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVIL 559
TRAGGLGLNLQTADTVIIFDSDWNP D QA+DRAHRIGQ KEVR++ L++ S+EE IL
Sbjct: 812 TRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENIL 871
Query: 560 ERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSER---EINRLA 616
RA+ K+ ID KVIQAG F+ ST ++R L+ ++ D E E+N +
Sbjct: 872 ARAQYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKGELDDDELNEIL 931
Query: 617 ARSDEEFWLFEKMDEERRQKENY-----RSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFG 671
AR D+E LF++M E+ ++ Y + RL++ E+PE+ K E+ G
Sbjct: 932 ARGDDELRLFKQMTEDLERESPYGKNKEKERLIQVSELPEFYQREEPEKTTDLLQEEPLG 991
Query: 672 HESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNS 731
G R+R VVY + + D QWM E + TRG+ + + S A
Sbjct: 992 R------GARRRTPVVYDEAVRDAQWM--AEMDMESEARPTRGRPKRNIASVDETPALTL 1043
Query: 732 TGAEKK 737
G KK
Sbjct: 1044 NGKPKK 1049
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 1498 (532.4 bits), Expect = 4.3e-156, Sum P(2) = 4.3e-156
Identities = 310/681 (45%), Positives = 442/681 (64%)
Query: 103 VTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
V EQP L+ GG+L+ YQ+ GL+W++SL+ NLNGILADEMGLGKT+QTIA I++L E
Sbjct: 612 VIEQPDLMTGGKLKEYQVTGLEWLISLYTRNLNGILADEMGLGKTVQTIAFISFLYERMN 671
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITH 222
V P ++VAP + + NW++EF+ W+P + +VY G+ DER+ R F V+IT
Sbjct: 672 VREPFLVVAPLSTISNWVSEFARWSPKLHVIVYKGKQDERRETARTI--PRNAFCVVITS 729
Query: 223 YDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQE 282
++ I++DR+ L +V WIY+I+DEGHR+KN L+ + Y + RLLLTGTP+QN L E
Sbjct: 730 FEYIIKDRKTLGRVHWIYIIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTGTPLQNDLGE 789
Query: 283 LWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ--VALTDEEQLLIIRRLHHVIRPFILRR 340
LW+LLNFLLPTIFNS + F+ WFNAPF+ +G+ + + +EE L+II RLH V+R F+LRR
Sbjct: 790 LWALLNFLLPTIFNSADTFQNWFNAPFQAKGKNLINVNEEESLIIINRLHQVLRFFLLRR 849
Query: 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD-------TGTGKSKSLQNL 393
K +VE LP K + ++KC+MSA Q Y+ + + G + +D +G K K N+
Sbjct: 850 LKSDVESQLPDKKEKVIKCNMSALQIAMYRSLVEYGVLPIDPDSKEGRSGRLKMKGFNNI 909
Query: 394 SMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLM 453
QL+K CNHPYLF E+++ E++IR SGKF+ +D++L K+ S HRVL+F+QMT ++
Sbjct: 910 VKQLQKICNHPYLFKDEWDI--NEDLIRTSGKFDTMDQILTKMHASKHRVLIFTQMTEVI 967
Query: 454 DILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTAD 513
+++E Y L ++ FLRLDGSTK EER L+ ++N PDSP+++F+LST AGGLG+NLQTAD
Sbjct: 968 NLMEEYFSLKEWTFLRLDGSTKPEERAHLVVEWNRPDSPFWIFVLSTHAGGLGMNLQTAD 1027
Query: 514 TVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVI 573
TVIIFDSDWNPQMD QA+DR HRIGQ V VF L+S SIEE IL RA K+ IDAK+I
Sbjct: 1028 TVIIFDSDWNPQMDLQAQDRCHRIGQTNSVSVFRLISANSIEEKILGRATDKLEIDAKII 1087
Query: 574 QAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE-REINRLAARSDEEFWLFEKMDEE 632
QAG+FNT S Q+RR L++ + ++ +VP + +EIN+L AR D EF F++MD+E
Sbjct: 1088 QAGMFNTHSNDQERRAKLEQFLHGFPNNTLDEVPVDLKEINKLIARDDFEFKQFQEMDKE 1147
Query: 633 R---------RQKENYRSRLMEDHEVPEWAYSAP-DNKEEQKGFEKGFGHESSSITGKRK 682
R + ++ + RLM + E+PEW + P +K+E +K S++I
Sbjct: 1148 RLKVDQANSKKTRQPIKPRLMIEKELPEWVLATPVTDKDEDIAGKK----RSTAIASANS 1203
Query: 683 RKEVVYADTLSDLQWMKAVENGQDISK----LSTRGKRREYLPSEGNESASN---STGAE 735
V+ D L+D Q+ + +E + L + + +G +S S G +
Sbjct: 1204 ---FVH-DNLTDNQYARMIEKNMTFEQYKAHLEAKKLKNGKSKKDGEKSKKKKGKSRGRK 1259
Query: 736 KKNLDMKNEIFPLASEGTSED 756
K+ D + L EG S D
Sbjct: 1260 NKSDDEDSSDDELDDEGISSD 1280
Score = 45 (20.9 bits), Expect = 4.3e-156, Sum P(2) = 4.3e-156
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 700 AVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNE 744
A NG + RG++++ P+ +E E +N + K +
Sbjct: 1500 AATNGTSVHTPGKRGRKKKIRPNPEDEEKDKDKENENENENEKEK 1544
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 1491 (529.9 bits), Expect = 7.4e-153, P = 7.4e-153
Identities = 314/660 (47%), Positives = 434/660 (65%)
Query: 92 YNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI 151
Y H I E+V EQP + GG L+ YQL+GL+WMLSL+NNNLNGILADEMGLGKTIQTI
Sbjct: 847 YFKVAHRIHEEV-EQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTI 905
Query: 152 ALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS 211
A I YL+E K GP +I+ P + L NWI EF WAPS+ + Y G P RK ++ + S
Sbjct: 906 AFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQIRS 965
Query: 212 ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQRRLL 270
FNVL+T ++ I++DR L +++W++MI+DEGHR+KN + L T+S Y Q RL+
Sbjct: 966 SN--FNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLI 1023
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG---QVALTDEEQLLIIR 327
LTGTP+QN+L ELW+LLNF+LP IFNS+++F+EWFN PF + G ++ L +EE LLII+
Sbjct: 1024 LTGTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEALLIIK 1083
Query: 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKS 387
RLH V+RPF+ RR K +VEK LP K + ++KC +S Q YQQ+ G + +D GK+
Sbjct: 1084 RLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGEKGKT 1143
Query: 388 --KSLQNLSMQLRKCCNHPYLFVG-----EYNMWRKEEIIRASGKFELLDRLLPKLRKSG 440
K LQN MQL+K CNHP++F + + + + RA+GKFELLDR+LPKL +G
Sbjct: 1144 GIKGLQNTVMQLKKICNHPFIFEDVERAIDPSGTNVDLLWRAAGKFELLDRILPKLFLTG 1203
Query: 441 HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 500
H+ L+F QMT++M I+E YL+ ++K+LRLDGSTK+++R +LL QFN P S ++F+LST
Sbjct: 1204 HKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPKSDVYIFMLST 1263
Query: 501 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILE 560
RAGGLGLNLQTADTVIIFD+DWNP D QA+DRAHRIGQ KEVR+ L++ SIEE IL
Sbjct: 1264 RAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSIEENILS 1323
Query: 561 RAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRR-GTSS--LGTDVPSEREINRLAA 617
RA+ K+ +D KVIQAG F+ ST ++R L+ ++ G L + E+N L +
Sbjct: 1324 RAQYKLDLDGKVIQAGKFDNKSTPEEREAFLRSLLEHDGDDDHDLTYGELQDDELNELIS 1383
Query: 618 RSDEEFWLFEKMDEERRQKENYRS-----RLMEDHEVPEWAYSAPDNKEEQKGFEKGFGH 672
R+DEE LF+K+D+ER + Y RL+ +E+P++ D+ Q E
Sbjct: 1384 RTDEELVLFKKLDKERAATDIYGKGKPLERLLTVNELPDFYKVEVDSFAVQSSSEL---- 1439
Query: 673 ESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNST 732
E + KR+R+ + L+ L + V++ RG+ R+ + N +S ST
Sbjct: 1440 EDQYLERKRRRRNSISYTELT-LDELNTVDDPSSTLMPRKRGRPRK----KTNSGSSLST 1494
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 1465 (520.8 bits), Expect = 4.2e-150, P = 4.2e-150
Identities = 296/581 (50%), Positives = 395/581 (67%)
Query: 89 QRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTI 148
++ Y S H+I EKV EQ +++ G L+ YQ++GL+W++SL+NNNLNGILADEMGLGKTI
Sbjct: 747 EQTYYSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 806
Query: 149 QTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREE 208
QTI+L+ YL++ K V GP++I+ P + LPNW+ EF WAP++ V Y G P R+ ++ +
Sbjct: 807 QTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQNQ 866
Query: 209 FFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR- 267
+ + FNVL+T Y+ +++D+ L K+QW YMI+DEGHR+KNH C L + ++ + I
Sbjct: 867 MRATK--FNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPY 924
Query: 268 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLII 326
RLLLTGTP+QN L ELW+LLNFLLP+IF S FE+WFNAPF G+ V L +EE +LII
Sbjct: 925 RLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILII 984
Query: 327 RRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT---- 382
RRLH V+RPF+LRR K EVE LP K + I+KCDMSA Q+V Y+ + G + D
Sbjct: 985 RRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEKG 1044
Query: 383 --GTGKSKSLQNLSMQLRKCCNHPYLF----------VGEYNMWRKEEIIRASGKFELLD 430
G G +K+L N +QLRK CNHP++F G + + ++ R SGKFELLD
Sbjct: 1045 KHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGHGVVSGPDLYRVSGKFELLD 1104
Query: 431 RLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPD 490
R+LPKL+ + HRVLLF QMT+ M I+E YL F +LRLDG+TK E+RG LL++FNA
Sbjct: 1105 RILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKG 1164
Query: 491 SPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVS 550
S F+FLLSTRAGGLGLNLQTADTV+IFDSDWNP D QA+DRAHRIGQ+ EVRV L++
Sbjct: 1165 SDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMT 1224
Query: 551 VGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSER 610
V S+EE IL A+ K+ +D KVIQAG+F+ ST +R++ L+ I+ + D E
Sbjct: 1225 VNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQTILHQ-------DDNEEE 1277
Query: 611 EINRLAARSDEEFWLFEKMDEERRQ--KENYRSRLMEDHEV 649
E N + DE + EE + K R ED E+
Sbjct: 1278 EENEVP--DDEMINMMIARSEEEIEIFKRMDAERKKEDEEI 1316
Score = 959 (342.6 bits), Expect = 1.8e-95, P = 1.8e-95
Identities = 207/459 (45%), Positives = 299/459 (65%)
Query: 314 QVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT 373
+V L +EE +LIIRRLH V+RPF+LRR K EVE LP K + I+KCDMSA Q+V Y+ +
Sbjct: 972 KVELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQ 1031
Query: 374 DVGRVGLDT------GTGKSKSLQNLSMQLRKCCNHPYLF----------VGEYNMWRKE 417
G + D G G +K+L N +QLRK CNHP++F G + +
Sbjct: 1032 SKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGHGVVSGP 1091
Query: 418 EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTE 477
++ R SGKFELLDR+LPKL+ + HRVLLF QMT+ M I+E YL F +LRLDG+TK E
Sbjct: 1092 DLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAE 1151
Query: 478 ERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI 537
+RG LL++FNA S F+FLLSTRAGGLGLNLQTADTV+IFDSDWNP D QA+DRAHRI
Sbjct: 1152 DRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRI 1211
Query: 538 GQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRR 597
GQ+ EVRV L++V S+EE IL A+ K+ +D KVIQAG+F+ ST +R++ L+ I+ +
Sbjct: 1212 GQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQTILHQ 1271
Query: 598 GTSSLG--TDVPSEREINRLAARSDEEFWLFEKMDEERRQKENY----RSRLMEDHEVPE 651
+ +VP + IN + ARS+EE +F++MD ER++++ R RL+++ E+P+
Sbjct: 1272 DDNEEEEENEVPDDEMINMMIARSEEEIEIFKRMDAERKKEDEEIHPGRERLIDESELPD 1331
Query: 652 WAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKL- 710
W D+ E ++ F + ++ G R+RKEV Y D+L++ +W+KA+++G + +
Sbjct: 1332 WL--TKDDDEVER-FHYQYDEDTILGRGSRQRKEVDYTDSLTEKEWLKAIDDGAEFDEEE 1388
Query: 711 ----STRGKR-REYLPSEGNESASNSTGAEKKNLDMKNE 744
S R +R R+ E ++ + ++NLD +++
Sbjct: 1389 EEDDSKRKRRKRKNRKEESDDDSLILKRRRRQNLDKRSK 1427
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 1424 (506.3 bits), Expect = 1.1e-144, Sum P(3) = 1.1e-144
Identities = 280/566 (49%), Positives = 387/566 (68%)
Query: 86 LEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLG 145
LE +Y HSI+E + EQP+ L GG+LR YQ+ GL+W++SL+NN+LNGILADEMGLG
Sbjct: 725 LESNEKYYLMAHSIKENINEQPSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLG 784
Query: 146 KTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAM 205
KT+Q I+LI YL+E K GP ++V P +VLP W +E + WAPSI +VY G PDER+ +
Sbjct: 785 KTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKL 844
Query: 206 REEFFSERGRFNVLITHYDLIMR--DRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY 263
+E + +FNVL+T Y+ +M DR L K+ W Y+I+DEGHR+KN C L + Y
Sbjct: 845 FKEQIVHQ-KFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHY 903
Query: 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-----LT 318
RLLLTGTP+QN+L+ELW+LLNFLLP IFNS E+F +WFN PF+ G+ + L+
Sbjct: 904 VSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLS 963
Query: 319 DEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRV 378
+EE LLII RLH V+RPF+LRR K +VE LP K + +++C+ SA+QK+ ++V D +
Sbjct: 964 EEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCEASAYQKLLMKRVED--NL 1021
Query: 379 GLDTGTGKSKSLQNLSMQLRKCCNHPYL--FVGEY--NMWRKE---EIIRASGKFELLDR 431
G G KS+++ N M+LR CNHPYL E N+ K I+R GK E+LDR
Sbjct: 1022 G-SIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDR 1080
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKL+ + HRVL FS MTRL+D++E YL L +K+LRLDG T +RG L+ FN S
Sbjct: 1081 MLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGS 1140
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
P+F+FLLS RAGG+G+NLQ ADTVI+FD+DWNPQ+D QA+ RAHRIGQKK+V V +V
Sbjct: 1141 PFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETV 1200
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSERE 611
S+EE + A+ K+G+ + I AG F+ ++A+DR+E L+ ++R V +
Sbjct: 1201 NSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYLESLLRESKKEEDAPVLDDDA 1260
Query: 612 INRLAARSDEEFWLFEKMDEERRQKE 637
+N L AR + E +FE +D++R++ E
Sbjct: 1261 LNDLIARRESEIDIFESIDKQRKENE 1286
Score = 37 (18.1 bits), Expect = 1.1e-144, Sum P(3) = 1.1e-144
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 648 EVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKE 685
E +++ S P +EE + SSS+T +K E
Sbjct: 3017 EGTDFSSSLPKTEEENAKSQLADTEPSSSLTAVQKNIE 3054
Score = 37 (18.1 bits), Expect = 1.1e-144, Sum P(3) = 1.1e-144
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 699 KAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNE 744
K EN D +L EG SNS AE+ N+++ +
Sbjct: 3527 KDAENPSD--RLDGESDGTTVATVEGTCVESNSLVAEESNIEVPKD 3570
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 1301 (463.0 bits), Expect = 1.0e-132, P = 1.0e-132
Identities = 281/574 (48%), Positives = 370/574 (64%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
L G + Y + H++ E+V +Q L+ G L+ YQ++GL+W++SL+NNNLNGILADEMGL
Sbjct: 716 LARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGL 775
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKTIQTIALI YL+E+K + GP +I+ P + L NW EF WAPS+ V Y G P R+A
Sbjct: 776 GKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRA 835
Query: 205 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
+ S G+FNVL+T Y+ I++D+ L K++W YMIVDEGHR+KNH C L + ++ +
Sbjct: 836 FVPQLRS--GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 893
Query: 265 IQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQ 322
+ RRLLLTGTP+QN L ELW+LLNFLLPTIF S FE+WFNAPF G+ V L +EE
Sbjct: 894 VAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEET 953
Query: 323 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD- 381
+LIIRRLH V+RPF+LRR K EVE LP K + ++KCDMSA Q+V Y+ + G + D
Sbjct: 954 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1013
Query: 382 -----TGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLD--RLLP 434
G G +K+L N MQLRK CNHPY+F + E + G + LD R
Sbjct: 1014 SEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESF-SEHLGFTGGIVQGLDLYRASG 1072
Query: 435 KLRKSGHRVLLFSQMTRLMDIL-----EIYLKLNDF----KFLRLD-GSTKTEERGTLLK 484
K R+L + T +L + + D+ F L T E +L
Sbjct: 1073 KFELLD-RILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLL 1131
Query: 485 QFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVR 544
FN P S YF+ LLSTRAGGLGLNLQ+ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVR
Sbjct: 1132 TFNEPGSEYFI-LLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1190
Query: 545 VFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGT 604
V L +V S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+
Sbjct: 1191 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEE 1250
Query: 605 D-VPSEREINRLAARSDEEFWLFEKMDEERRQKE 637
D VP + +N++ AR +EEF LF +MD +RR++E
Sbjct: 1251 DEVPDDETVNQMIARHEEEFDLFMRMDLDRRREE 1284
Score = 796 (285.3 bits), Expect = 5.2e-78, P = 5.2e-78
Identities = 184/388 (47%), Positives = 246/388 (63%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYLF------VGEY-----NMWRKEEIIRASGKFELLDR 431
G G +K+L N MQLRK CNHPY+F E+ + + ++ RASGKFELLDR
Sbjct: 1020 GKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDR 1079
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+LPKLR + H+VLLF QMT LM I+E Y FK+LRLDG+TK E+RG LL FN P S
Sbjct: 1080 ILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLT-FNEPGS 1138
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
YF+ LLSTRAGGLGLNLQ+ADTVIIFDSDWNP D QA+DRAHRIGQ+ EVRV L +V
Sbjct: 1139 EYFI-LLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV 1197
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-VPSER 610
S+EE IL AK K+ +D KVIQAG+F+ S++ +RR L+ I+ D VP +
Sbjct: 1198 NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDE 1257
Query: 611 EINRLAARSDEEFWLFEKMDEERRQKE----NYRSRLMEDHEVPEWAYSAPDNKEE---Q 663
+N++ AR +EEF LF +MD +RR++E + RLME+ E+P W E +
Sbjct: 1258 TVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE 1317
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG--QDIS-----KLSTRGKR 716
+ EK FG G R RKEV Y+D+L++ QW+KA+E G ++I K S+R ++
Sbjct: 1318 EEEEKMFGR------GSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRK 1371
Query: 717 REYLPSEGNESASNSTGAEKKNLDMKNE 744
R+ G + + ST + K+ + K +
Sbjct: 1372 RD--SDAGPSTPTTSTRSRDKDDESKKQ 1397
>GENEDB_PFALCIPARUM|PFB0730w [details] [associations]
symbol:PFB0730w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0006338 GO:GO:0016514 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS
PIR:F71607 RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 994 (355.0 bits), Expect = 1.7e-132, Sum P(2) = 1.7e-132
Identities = 198/403 (49%), Positives = 285/403 (70%)
Query: 89 QRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTI 148
+ YN + H ++EKV +QP++L GGEL YQLEGL+W++SL+NNNL+GILADEMGLGKTI
Sbjct: 860 ENYYNIS-HVVKEKV-KQPSILIGGELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTI 917
Query: 149 QTIALIAYLLENKG-VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE 207
QTI+L AYL E K + ++I+ P + LPNWI+EF+ W PS+ + Y G ERK + +
Sbjct: 918 QTISLFAYLKEFKNNINVKNLIIVPLSTLPNWISEFNRWCPSLNVITYRGNKLERKHIAK 977
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR 267
+ + F++ IT +DL+++++ +L K+ W Y++VDEGHR+KN++ +S ++ +
Sbjct: 978 KLLEQT--FDICITTFDLVIKEKSFLMKISWNYIVVDEGHRMKNNKSRFHVFLSEFKSKY 1035
Query: 268 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA--LTDEEQLLI 325
R+LLTGTP+QN+L ELWSLLNFLLP IF+S +FE+WF + V +T+EEQLLI
Sbjct: 1036 RILLTGTPLQNNLSELWSLLNFLLPKIFSSCVDFEKWFVKSLHNEKDVYEHITEEEQLLI 1095
Query: 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD-TGT 384
I RLH V+ PF+LRR K +V K LP K + + ++S +QK+ Y+Q+ G ++ G+
Sbjct: 1096 INRLHSVLLPFMLRRVKKDVLKSLPKKYEYNIHIELSLYQKILYKQIQTKGFKQVNHNGS 1155
Query: 385 GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVL 444
+K QN+ MQLRK NHPYLF+ +YN+ E II+ SGKFE+LDR+LPKL K H+VL
Sbjct: 1156 ITTKIFQNIVMQLRKIVNHPYLFLYDYNI--DENIIKCSGKFEVLDRMLPKLLKFKHKVL 1213
Query: 445 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFN 487
+FSQMT+LM+IL YL+ +K+ RLDG+ +ER ++ QFN
Sbjct: 1214 IFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERKKIIDQFN 1256
Score = 350 (128.3 bits), Expect = 1.7e-132, Sum P(2) = 1.7e-132
Identities = 94/248 (37%), Positives = 137/248 (55%)
Query: 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543
K N + +F+LSTR+G LGLNLQTADTVIIFDSD+NP D QA R HRIGQK V
Sbjct: 1394 KNVNGGNQDAMIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVV 1453
Query: 544 RVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLG 603
+VF +++ +EE++ ++A+ K+ I+ KVIQAGLFN +DR+ LK+I++R +
Sbjct: 1454 KVFRFITLSGVEELVFKKAQHKLSINDKVIQAGLFNKIYNDEDRQNKLKDIIQRNQKNDM 1513
Query: 604 TDVPSEREI-NRLAARSDEEFWLFEKMDEERRQKENYRSRL----MEDHEVPEWAYSAPD 658
T P+ + N R++EE F D+ R E Y S L +E+ + ++ Y + D
Sbjct: 1514 TTHPTNPLLLNYYMKRNEEELEYFLDFDK-RYFGEQYFSLLNTLNVENVDSGQFTYMSED 1572
Query: 659 NKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRRE 718
KEE + + SSI K K++E D + Q + E QD K + K ++
Sbjct: 1573 EKEENETY-------LSSIIKKEKKEEEGEDD--EENQRDRNKEEDQDEDKDDDKDKDKD 1623
Query: 719 YLPSEGNE 726
E E
Sbjct: 1624 KDKEEEEE 1631
>UNIPROTKB|O96239 [details] [associations]
symbol:PFB0730w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006338
GO:GO:0016514 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS PIR:F71607
RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 994 (355.0 bits), Expect = 1.7e-132, Sum P(2) = 1.7e-132
Identities = 198/403 (49%), Positives = 285/403 (70%)
Query: 89 QRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTI 148
+ YN + H ++EKV +QP++L GGEL YQLEGL+W++SL+NNNL+GILADEMGLGKTI
Sbjct: 860 ENYYNIS-HVVKEKV-KQPSILIGGELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTI 917
Query: 149 QTIALIAYLLENKG-VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE 207
QTI+L AYL E K + ++I+ P + LPNWI+EF+ W PS+ + Y G ERK + +
Sbjct: 918 QTISLFAYLKEFKNNINVKNLIIVPLSTLPNWISEFNRWCPSLNVITYRGNKLERKHIAK 977
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR 267
+ + F++ IT +DL+++++ +L K+ W Y++VDEGHR+KN++ +S ++ +
Sbjct: 978 KLLEQT--FDICITTFDLVIKEKSFLMKISWNYIVVDEGHRMKNNKSRFHVFLSEFKSKY 1035
Query: 268 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA--LTDEEQLLI 325
R+LLTGTP+QN+L ELWSLLNFLLP IF+S +FE+WF + V +T+EEQLLI
Sbjct: 1036 RILLTGTPLQNNLSELWSLLNFLLPKIFSSCVDFEKWFVKSLHNEKDVYEHITEEEQLLI 1095
Query: 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD-TGT 384
I RLH V+ PF+LRR K +V K LP K + + ++S +QK+ Y+Q+ G ++ G+
Sbjct: 1096 INRLHSVLLPFMLRRVKKDVLKSLPKKYEYNIHIELSLYQKILYKQIQTKGFKQVNHNGS 1155
Query: 385 GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVL 444
+K QN+ MQLRK NHPYLF+ +YN+ E II+ SGKFE+LDR+LPKL K H+VL
Sbjct: 1156 ITTKIFQNIVMQLRKIVNHPYLFLYDYNI--DENIIKCSGKFEVLDRMLPKLLKFKHKVL 1213
Query: 445 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFN 487
+FSQMT+LM+IL YL+ +K+ RLDG+ +ER ++ QFN
Sbjct: 1214 IFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERKKIIDQFN 1256
Score = 350 (128.3 bits), Expect = 1.7e-132, Sum P(2) = 1.7e-132
Identities = 94/248 (37%), Positives = 137/248 (55%)
Query: 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543
K N + +F+LSTR+G LGLNLQTADTVIIFDSD+NP D QA R HRIGQK V
Sbjct: 1394 KNVNGGNQDAMIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVV 1453
Query: 544 RVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLG 603
+VF +++ +EE++ ++A+ K+ I+ KVIQAGLFN +DR+ LK+I++R +
Sbjct: 1454 KVFRFITLSGVEELVFKKAQHKLSINDKVIQAGLFNKIYNDEDRQNKLKDIIQRNQKNDM 1513
Query: 604 TDVPSEREI-NRLAARSDEEFWLFEKMDEERRQKENYRSRL----MEDHEVPEWAYSAPD 658
T P+ + N R++EE F D+ R E Y S L +E+ + ++ Y + D
Sbjct: 1514 TTHPTNPLLLNYYMKRNEEELEYFLDFDK-RYFGEQYFSLLNTLNVENVDSGQFTYMSED 1572
Query: 659 NKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRRE 718
KEE + + SSI K K++E D + Q + E QD K + K ++
Sbjct: 1573 EKEENETY-------LSSIIKKEKKEEEGEDD--EENQRDRNKEEDQDEDKDDDKDKDKD 1623
Query: 719 YLPSEGNE 726
E E
Sbjct: 1624 KDKEEEEE 1631
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 779 (279.3 bits), Expect = 1.1e-129, Sum P(2) = 1.1e-129
Identities = 151/309 (48%), Positives = 207/309 (66%)
Query: 91 QYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT 150
+Y + H++ E V QP++LQ G LR YQL GLQWMLSL+NN LNGILADEMGLGKT+Q
Sbjct: 957 KYYTLAHAVNEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1016
Query: 151 IALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDER-KAMREEF 209
+ALIAYL+E KG GPH+I+ P AVL NW +E TW PS++ + Y G D+R K +E
Sbjct: 1017 MALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQEV 1076
Query: 210 FSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRL 269
+ + FNVL+T Y+ IM DR L KV W Y+I+DE R+K+ E LA+ + Y+ QRRL
Sbjct: 1077 CAMK--FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRL 1134
Query: 270 LLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA------LTDEEQL 323
LLTGTP+QN L+ELWSLLN LLP +F++ + F +WF PF+ G L E+++
Sbjct: 1135 LLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKV 1194
Query: 324 LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTG 383
++I RLH ++ PF+LRR+ ++VE LP K V+L+C MSA Q Y + G + +D
Sbjct: 1195 IVIHRLHQILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPD 1254
Query: 384 TGKSKSLQN 392
K ++ +N
Sbjct: 1255 DEKLRAQKN 1263
Score = 543 (196.2 bits), Expect = 1.1e-129, Sum P(2) = 1.1e-129
Identities = 162/497 (32%), Positives = 253/497 (50%)
Query: 317 LTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVG 376
L E+++++I RLH ++ PF+LRR+ ++VE LP K V+L+C MSA Q Y + G
Sbjct: 1188 LETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATG 1247
Query: 377 RVGLDTGTGKSKS-------------LQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 423
+ +D K ++ L N M+LRK CNHP L +N + K+ ++R+
Sbjct: 1248 TLRVDPDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSC 1307
Query: 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 483
GK +LDR+L KL+++GHRVLLFS MT+L+DILE YL+ + R+DG+T E+R + +
Sbjct: 1308 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAI 1367
Query: 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543
FN PD+ F+FLLS RA G GLNLQTADTV+I+D D NP+ ++QA RAHRIGQ +EV
Sbjct: 1368 VDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREV 1427
Query: 544 RVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRR-EMLKEIMRRGTSSL 602
+V + +V +E++ + + ++ V +DR ++ ++R
Sbjct: 1428 KVIYMEAV--VEKLSSHQKEDELRSGGSVD----LEDDMAGKDRYIGSIEGLIRNNIQQY 1481
Query: 603 GTDVPSEREINRLAARSDEEFWLFEK-MDEER--RQKENYRSRLMEDHEVP---EWAYSA 656
D+ E IN A R D+ E+ M E +E Y+ + H+VP E
Sbjct: 1482 KIDMADE-VIN--AGRFDQRTTHEERRMTLETLLHDEERYQETV---HDVPSLHEVNRMI 1535
Query: 657 PDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRG-- 714
++EE + F++ E T + E V + + + A D+SK ++
Sbjct: 1536 ARSEEEVELFDQM--DEEFDWTEEMTNHEQVPKWLRASTREVNATV--ADLSKKPSKNML 1591
Query: 715 KRREYLPSEGNESASNSTGAEK-KNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSE 773
+ G G K K ++ K +A G SE+ S+ +R + N E
Sbjct: 1592 SSSNLIVQPGGPGGERKRGRPKSKKINYKEIEDDIA--GYSEE---SSEER-NIDSGNEE 1645
Query: 774 SSDIQSVEKSEHKGVQG 790
DI+ + E G G
Sbjct: 1646 EGDIRQFDDDELTGALG 1662
Score = 37 (18.1 bits), Expect = 3.0e-48, Sum P(2) = 3.0e-48
Identities = 23/91 (25%), Positives = 42/91 (46%)
Query: 86 LEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLG 145
L+ QRQ + AI ++++ +++ GE +A LE + + ++N +E +G
Sbjct: 504 LQTQRQISPAIGKVQDRSSDKT-----GEDQARSLECGKESQAAASSNGPIFSKEEDNVG 558
Query: 146 KTIQTIALI---AYLLENKGVTGPHVIVAPK 173
T +AL + L +N G VA K
Sbjct: 559 DT--EVALTTGHSQLFQNLGKEATSTDVATK 587
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 260/589 (44%), Positives = 385/589 (65%)
Query: 102 KVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
++ QP +QG +LR YQL GL W++ L+ N +NGILADEMGLGKT+QTI+L+AYL E +
Sbjct: 182 RLLTQPACIQG-KLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYR 240
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLIT 221
G+ GPH++VAPK+ L NW+NE + P + AV + G P+ER+ +REE G+F++ +T
Sbjct: 241 GINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVA-GKFDICVT 299
Query: 222 HYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQ 281
+++ ++++ L++ W Y+I+DE HR+KN L+KT+ + RLL+TGTP+QN+L
Sbjct: 300 SFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLH 359
Query: 282 ELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 341
ELW+LLNFLLP +F+S E F+EWF G+ D+++ ++++LH V+RPF+LRR
Sbjct: 360 ELWALLNFLLPEVFSSAETFDEWFQIS----GE---NDQQE--VVQQLHKVLRPFLLRRL 410
Query: 342 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCC 401
K +VEK LP K + ILK MS QK YY+ + + + G G+ K L N++MQLRKCC
Sbjct: 411 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKD-LEVVNGGGERKRLLNIAMQLRKCC 469
Query: 402 NHPYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEI 458
NHPYLF G + ++ +GK LLD+LLPKL+ RVL+FSQMTRL+DILE
Sbjct: 470 NHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILED 529
Query: 459 YLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIF 518
YL +++ R+DG+T +ER ++ +N P S F+FLLSTRAGGLG+NL TAD VI++
Sbjct: 530 YLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILY 589
Query: 519 DSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 578
DSDWNPQ+D QA+DRAHRIGQKKEV+VF + +IE ++ERA +K+ +DA VIQ G
Sbjct: 590 DSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRL 649
Query: 579 NTTSTAQDRREMLKEIMRRGTSSLGTDVPS---EREINRLAARSDEEFWLFEKMDEERRQ 635
T ++ E+L +++R G + + S + +I+R+ A+ +E ++D + ++
Sbjct: 650 AEQKTV-NKDELL-QMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEAT---AELDAKMKK 704
Query: 636 KENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRK 684
+ D + + DNK+E K K E+ + KR+RK
Sbjct: 705 FTEDAIQFKMDDSADFYDFD-DDNKDESKVDFKKIVSENWNDPPKRERK 752
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 1210 (431.0 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 246/524 (46%), Positives = 344/524 (65%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P ++ GE+R YQ+ GL WM+SL+ N +NGILADEMGLGKT+QTI+L+ YL K GP
Sbjct: 120 PAYIKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGP 179
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI 226
H+++ PK+ L NW+NEF W PS+ AV G D R + G ++V +T Y++
Sbjct: 180 HIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLMP-GEWDVCVTSYEMC 238
Query: 227 MRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSL 286
+R++ KK W Y+++DE HR+KN + L++ + ++ RLL+TGTP+QN+L ELW+L
Sbjct: 239 IREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWAL 298
Query: 287 LNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVE 346
LNFLLP +FNS E+F+EWFN L D+ +I RLH V++PF+LRR K EVE
Sbjct: 299 LNFLLPDVFNSSEDFDEWFNT------NTCLGDDA---LITRLHAVLKPFLLRRLKAEVE 349
Query: 347 KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKS--LQNLSMQLRKCCNHP 404
K L K ++ + +S Q+ +Y +V + + + G GK + LQN+ MQLRKC NHP
Sbjct: 350 KRLKPKKEMKIFVGLSKMQRDWYTKVL-LKDIDVVNGAGKVEKMRLQNILMQLRKCTNHP 408
Query: 405 YLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK 461
YLF G ++ SGK +LD+LLPKL++ G RVL+FSQMTR++DILE Y
Sbjct: 409 YLFDGAEPGPPYTTDTHLVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCH 468
Query: 462 LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSD 521
++ + RLDG T E+R +++FN +S F+F+LSTRAGGLG+NL TAD VII+DSD
Sbjct: 469 WRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSD 528
Query: 522 WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG-LFNT 580
WNPQMD QA DRAHRIGQKK+VRVF L++ ++EE I+ERA+ K+ +D VIQ G L +
Sbjct: 529 WNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDN 588
Query: 581 TSTAQDRREMLKEIMRRGT----SSLGTDVPSEREINRLAARSD 620
S ++ EML I+R G SS TD+ E +I+ + R +
Sbjct: 589 RSNQLNKDEMLN-IIRFGANQVFSSKETDITDE-DIDVILERGE 630
Score = 44 (20.5 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 734 AEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHK 786
AEKK K + S S +T AP+ ++R SE S K + K
Sbjct: 976 AEKKKKAPKGSV-SAGSGSASSNTPAPAPQPKASQKRKSEVVATSSNSKKKKK 1027
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
Identities = 257/571 (45%), Positives = 369/571 (64%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
E P+ ++GG LR YQ+ GL WM+SL+ N +NGILADEMGLGKT+QTIAL+ YL + +
Sbjct: 97 ESPSYVKGGTLRDYQVRGLNWMISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP 156
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYD 224
GPH+++ PK+ L NW+NEF W PS+ AV G D R A + G ++V +T Y+
Sbjct: 157 GPHMVLVPKSTLHNWMNEFKRWVPSLRAVCLIGDKDARAAFIRDVMMP-GEWDVCVTSYE 215
Query: 225 LIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELW 284
++++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW
Sbjct: 216 MVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 275
Query: 285 SLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344
+LLNFLLP +FNS ++F+ WF+ K+ L D++ ++ RLH V++PF+LRR K E
Sbjct: 276 ALLNFLLPDVFNSADDFDSWFDT--KN----CLGDQK---LVERLHAVLKPFLLRRIKAE 326
Query: 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NLSMQLRKCCN 402
VEK LP K +V + +S Q+ +Y ++ + + + GK ++ N+ MQLRKCCN
Sbjct: 327 VEKSLPPKKEVKIYLGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNILMQLRKCCN 385
Query: 403 HPYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIY 459
HPYLF G +I SGK +LD+LL KLR+ G RVLLFSQMTRL+DILE Y
Sbjct: 386 HPYLFDGAEPGPPYTTDTHLITNSGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDY 445
Query: 460 LKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFD 519
+++ RLDG T EER + FNAP+S F+F+LSTRAGGLG+NL TAD VI++D
Sbjct: 446 CMWRGYEYCRLDGQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGLGINLATADVVILYD 505
Query: 520 SDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG-LF 578
SDWNPQ+D QA DRAHRIGQKK VRVF L++ ++EE I+ERA+ K+ +D+ VIQ G L
Sbjct: 506 SDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLI 565
Query: 579 NTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLFEKMDEERRQ 635
+ S + EML +++R G + + SE +I + R +++ +M+E R Q
Sbjct: 566 DQQSNKLAKDEML-QMIRHGATHVFASKDSELTEEDITTILERGEKKT---AEMNE-RLQ 620
Query: 636 K--ENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
K E+ D E+ + + D +E+QK
Sbjct: 621 KMGESSLRNFTMDTEMSLYNFEGEDYREKQK 651
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
Identities = 251/570 (44%), Positives = 370/570 (64%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P+ ++GG LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTIAL+ YL + + GP
Sbjct: 178 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 237
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA-MREEFFSERGRFNVLITHYDL 225
H+++ PK+ L NW+NEF W PS+ + + G D R A +R+E G ++V +T Y++
Sbjct: 238 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMP--GEWDVCVTSYEM 295
Query: 226 IMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285
+++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW+
Sbjct: 296 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 355
Query: 286 LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 345
LLNFLLP +FNS ++F+ WF+ K+ L D++ ++ RLH V++PF+LRR K +V
Sbjct: 356 LLNFLLPDVFNSADDFDSWFDT--KN----CLGDQK---LVERLHAVLKPFLLRRIKTDV 406
Query: 346 EKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NLSMQLRKCCNH 403
EK LP K ++ + +S Q+ +Y ++ + + + GK ++ N+ MQLRKCCNH
Sbjct: 407 EKSLPPKKEIKIYLGLSKMQREWYTKIL-MKDIDVLNSAGKMDKMRLLNILMQLRKCCNH 465
Query: 404 PYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL 460
PYLF G E I+ SGK +LD+LL KL++ G RVL+FSQMTRL+DILE Y
Sbjct: 466 PYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC 525
Query: 461 KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDS 520
+++ RLDG T EER ++ FN P+S F+F+LSTRAGGLG+NL +AD VI++DS
Sbjct: 526 MWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDS 585
Query: 521 DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG-LFN 579
DWNPQ+D QA DRAHRIGQKK VRVF L++ ++EE I+ERA+ K+ +D+ VIQ G L +
Sbjct: 586 DWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLID 645
Query: 580 TTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLFEKMDEERRQK 636
S + EML +++R G + + SE +I L R + + +M+E R QK
Sbjct: 646 QQSNKMAKEEML-QMIRHGATHVFASKESELTDEDITTLLERGERKT---AEMNE-RLQK 700
Query: 637 --ENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
E+ D E + + D +E+QK
Sbjct: 701 MGESSLRNFRMDTEQSLYKFEGEDYREKQK 730
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
Identities = 251/570 (44%), Positives = 370/570 (64%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P+ ++GG LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTIAL+ YL + + GP
Sbjct: 178 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 237
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA-MREEFFSERGRFNVLITHYDL 225
H+++ PK+ L NW+NEF W PS+ + + G D R A +R+E G ++V +T Y++
Sbjct: 238 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMP--GEWDVCVTSYEM 295
Query: 226 IMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285
+++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW+
Sbjct: 296 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 355
Query: 286 LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 345
LLNFLLP +FNS ++F+ WF+ K+ L D++ ++ RLH V++PF+LRR K +V
Sbjct: 356 LLNFLLPDVFNSADDFDSWFDT--KN----CLGDQK---LVERLHAVLKPFLLRRIKTDV 406
Query: 346 EKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NLSMQLRKCCNH 403
EK LP K ++ + +S Q+ +Y ++ + + + GK ++ N+ MQLRKCCNH
Sbjct: 407 EKSLPPKKEIKIYLGLSKMQREWYTKIL-MKDIDVLNSAGKMDKMRLLNILMQLRKCCNH 465
Query: 404 PYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL 460
PYLF G E I+ SGK +LD+LL KL++ G RVL+FSQMTRL+DILE Y
Sbjct: 466 PYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC 525
Query: 461 KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDS 520
+++ RLDG T EER ++ FN P+S F+F+LSTRAGGLG+NL +AD VI++DS
Sbjct: 526 MWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDS 585
Query: 521 DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG-LFN 579
DWNPQ+D QA DRAHRIGQKK VRVF L++ ++EE I+ERA+ K+ +D+ VIQ G L +
Sbjct: 586 DWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLID 645
Query: 580 TTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLFEKMDEERRQK 636
S + EML +++R G + + SE +I L R + + +M+E R QK
Sbjct: 646 QQSNKMAKEEML-QMIRHGATHVFASKESELTDEDITTLLERGERKT---AEMNE-RLQK 700
Query: 637 --ENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
E+ D E + + D +E+QK
Sbjct: 701 MGESSLRNFRMDTEQSLYKFEGEDYREKQK 730
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 1173 (418.0 bits), Expect = 6.5e-123, Sum P(2) = 6.5e-123
Identities = 244/552 (44%), Positives = 363/552 (65%)
Query: 103 VTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
V+E P+ ++ G+LR YQ++GL W++SL N L+GILADEMGLGKT+QTI+ + YL K
Sbjct: 172 VSESPSFVKSGKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQ 231
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITH 222
+ GP +I+ PK+ L NW EF W P++ +V G D R + E RF+VLIT
Sbjct: 232 IEGPFLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILE-ARFDVLITS 290
Query: 223 YDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQE 282
Y++++R++ LK++ W Y+++DE HR+KN + AL++ I + + RLL+TGTP+QN+L E
Sbjct: 291 YEMVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHE 350
Query: 283 LWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 342
LW+LLNFLLP IF E F+EWF ++ ++++Q ++I++LH V+ PF+LRR K
Sbjct: 351 LWALLNFLLPDIFGDSELFDEWF-----EQNN---SEQDQEIVIQQLHSVLNPFLLRRVK 402
Query: 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVT--DVGRVGLDTGTGKSKS-LQNLSMQLRK 399
+VEK L K + + M+ Q +Y+ + D+ V G + K+ L N+ MQLRK
Sbjct: 403 ADVEKSLLPKIETNVYVGMTDMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRK 462
Query: 400 CCNHPYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDIL 456
CCNHPYLF G E +I SGK +LD+LL +L++ G RVL+FSQM+RL+DIL
Sbjct: 463 CCNHPYLFEGAEPGPPYTTDEHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDIL 522
Query: 457 EIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 516
E Y DF++ R+DGST EER + ++N P+S F+FLL+TRAGGLG+NL TADTVI
Sbjct: 523 EDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVI 582
Query: 517 IFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG 576
+FDSDWNPQ D QA DRAHRIGQKK+V V+ V+ +IEE ++ERA QK+ +D VIQ G
Sbjct: 583 LFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQQG 642
Query: 577 LFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQK 636
T++ + ++ L ++++ G ++ E++ +++ +D + L K E++ Q+
Sbjct: 643 TGKKTASLGNSKDDLLDMIQFGAKNM-----FEKKASKVTVDADIDDIL--KKGEQKTQE 695
Query: 637 EN--YRSRLMED 646
N Y+S ++D
Sbjct: 696 LNAKYQSLGLDD 707
Score = 56 (24.8 bits), Expect = 6.5e-123, Sum P(2) = 6.5e-123
Identities = 28/138 (20%), Positives = 53/138 (38%)
Query: 592 KEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEK-MD--EERRQ-----KENYRSRL 643
KEI+ G+ S P + ++F F K +D +E+ Q K NY+
Sbjct: 760 KEIIGGGSKSASKQTPQPKAPRAPKVIHGQDFQFFPKELDALQEKEQLYFKKKVNYKVTS 819
Query: 644 ME-DHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVE 702
+ ++ A + + E K GH+ +R +E ++ D +
Sbjct: 820 YDITGDIRNEGSDAEEEEGEYKNAANTEGHKGHEELKRRIEEEQEKINSAPDFTQEDELR 879
Query: 703 NGQDISKLSTRGKRREYL 720
+ ISK T +R+++
Sbjct: 880 KQELISKAFTNWNKRDFM 897
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
Identities = 249/570 (43%), Positives = 371/570 (65%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P+ ++GG LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTIAL+ YL + + GP
Sbjct: 179 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 238
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA-MREEFFSERGRFNVLITHYDL 225
H+++ PK+ L NW+NEF W PS+ + + G D R A +R+E G ++V +T Y++
Sbjct: 239 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMP--GEWDVCVTSYEM 296
Query: 226 IMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285
+++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW+
Sbjct: 297 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 356
Query: 286 LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 345
LLNFLLP +FNS ++F+ WF+ K+ L D++ ++ RLH V++PF+LRR K +V
Sbjct: 357 LLNFLLPDVFNSADDFDSWFDT--KN----CLGDQK---LVERLHAVLKPFLLRRIKTDV 407
Query: 346 EKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NLSMQLRKCCNH 403
EK LP K ++ + +S Q+ +Y ++ + + + +GK ++ N+ MQLRKCCNH
Sbjct: 408 EKSLPPKKEIKIYLGLSKMQREWYTKIL-MKDIDVLNSSGKMDKMRLLNILMQLRKCCNH 466
Query: 404 PYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL 460
PYLF G E I+ SGK LD+LL ++++ G RVL+FSQMTRL+DILE Y
Sbjct: 467 PYLFDGAEPGPPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYC 526
Query: 461 KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDS 520
+++ RLDG T EER + FNAP+S F+F+LSTRAGGLG+NL +AD VI++DS
Sbjct: 527 MWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDS 586
Query: 521 DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG-LFN 579
DWNPQ+D QA DRAHRIGQKK VRVF L++ ++EE I+ERA+ K+ +D+ VIQ G L +
Sbjct: 587 DWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLID 646
Query: 580 TTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLFEKMDEERRQK 636
S + EML +++R G + + SE +I + R +++ +M+E R QK
Sbjct: 647 QQSNKLAKEEML-QMIRHGATHVFACKESELTDEDIVTILERGEKKT---AEMNE-RMQK 701
Query: 637 --ENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
E+ D E + + D +E+QK
Sbjct: 702 MGESSLRNFRMDLEQSLYKFEGEDYREKQK 731
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 1199 (427.1 bits), Expect = 6.5e-122, P = 6.5e-122
Identities = 251/572 (43%), Positives = 370/572 (64%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P+ ++GG LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTIAL+ YL + + GP
Sbjct: 187 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 246
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA-MREEFFSERGRFNVLITHYDL 225
H+++ PK+ L NW+NEF W PS+ + + G D R A +R+E G ++V +T Y++
Sbjct: 247 HMVLVPKSTLYNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMP--GEWDVCVTSYEM 304
Query: 226 IMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285
+++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW+
Sbjct: 305 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 364
Query: 286 LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 345
LLNFLLP +FNS ++F+ WF+ K+ L D++ ++ RLH V++PF+LRR K +V
Sbjct: 365 LLNFLLPDVFNSADDFDSWFDT--KN----CLGDQK---LVERLHAVLKPFLLRRIKTDV 415
Query: 346 EKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NLSMQLRKCCNH 403
EK LP K ++ + +S Q+ ++ + + + GK ++ N+ MQLRKCCNH
Sbjct: 416 EKSLPPKKEIKVYLGLSKMQREWWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNH 475
Query: 404 PYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL 460
PYLF G E I+ SGK +LD+LL KL++ G RVL+FSQMTRL+DILE Y
Sbjct: 476 PYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC 535
Query: 461 KLNDFKFLRLDGSTKTEERGT--LLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIF 518
+++ RLDG T EER ++ FNAP+S F+F+LSTRAGGLG+NL +AD VI++
Sbjct: 536 MWRGYEYCRLDGQTPHEEREKKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILY 595
Query: 519 DSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG-L 577
DSDWNPQ+D QA DRAHRIGQKK VRVF L++ ++EE I+ERA+ K+ +D+ VIQ G L
Sbjct: 596 DSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 655
Query: 578 FNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLFEKMDEERR 634
+ S + EML +++R G + + SE +I L R +++ +M+E R
Sbjct: 656 IDQQSNKLAKEEML-QMIRHGATHVFASKESELTDEDITTLLERGEKKT---AEMNE-RL 710
Query: 635 QK--ENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
QK E+ D E + + D +E+QK
Sbjct: 711 QKMGESSLRNFRMDTEQSLYKFEGEDYREKQK 742
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
Identities = 249/580 (42%), Positives = 365/580 (62%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
E P+ ++ G LR YQ+ GL WM+SL+ N +NGILADEMGLGKT+QTIAL+ YL + +
Sbjct: 133 ESPSYIKNGTLRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTIALLGYLKHYRNIP 192
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYD 224
GPH+++ PK+ L NW+NEF W P++ AV G DER A + G ++V +T Y+
Sbjct: 193 GPHMVLVPKSTLHNWMNEFKRWVPTLKAVCLIGNKDERAAFIRDVMMP-GEWDVCVTSYE 251
Query: 225 LIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELW 284
+++R++ KK W Y+++DE HR+KN + L++ ++ RLLLTGTP+QN+L ELW
Sbjct: 252 MVIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHELW 311
Query: 285 SLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344
SLLNFLLP +FNS +F+ WF+ L D++ ++ RLH V+RPF+LRR K E
Sbjct: 312 SLLNFLLPDVFNSASDFDSWFDTN-------CLGDQK---LVERLHAVLRPFLLRRIKAE 361
Query: 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NLSMQLRKCCN 402
VEK LP K +V + +S Q+ +Y ++ + + + GK ++ N+ MQLRKCCN
Sbjct: 362 VEKSLPPKKEVKIYLGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNILMQLRKCCN 420
Query: 403 HPYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIY 459
HPYLF G ++ SGK LD+LLPK+++ G RVL+FSQMTR++DILE Y
Sbjct: 421 HPYLFDGAEPGPPYTTDTHLVINSGKMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDY 480
Query: 460 LKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFD 519
F++ RLDG+T E R + FNAP+S F+F+LSTRAGGLG+NL TAD VI++D
Sbjct: 481 CMWRGFEYCRLDGNTPHEAREQAIDAFNAPNSSKFIFMLSTRAGGLGINLATADVVILYD 540
Query: 520 SDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFN 579
SDWNPQ+D QA DRAHRIGQ+K V+VF L++ ++EE I+ERA+ K+ +D+ VIQ G
Sbjct: 541 SDWNPQVDLQAMDRAHRIGQRKPVKVFRLITDNTVEERIVERAEMKLRLDSIVIQQGRLI 600
Query: 580 TTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLFEKMDEERRQ- 635
+ EML +++R G + + SE +I+ + R ++ +M+E +
Sbjct: 601 DQQNKLGKDEML-QMIRHGATHVFASKDSELTDEDIDTILERGAKKT---AEMNERMQNL 656
Query: 636 -KENYRSRLMEDH--EVPEWAYSAPDNKEEQKGFEKGFGH 672
+ + R+ ++ E + + D +E+QK FGH
Sbjct: 657 GESSLRNFTVDTGATETSLYNFEGEDYREKQKVGVFIFGH 696
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 1171 (417.3 bits), Expect = 1.5e-121, Sum P(2) = 1.5e-121
Identities = 236/540 (43%), Positives = 343/540 (63%)
Query: 100 EEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 159
E + +QP + G ++ YQLEGL W+ L+ +NGILADEMGLGKT+QTI+L+ YL
Sbjct: 308 EAIILKQPMNING-TMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLCYLRF 366
Query: 160 NKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVL 219
NK + +I+ P++ L NW E W + A Y G D+RK + F+VL
Sbjct: 367 NKNIKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKELNRNLL--HSDFDVL 424
Query: 220 ITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNS 279
+T Y+++++D+ L + W ++++DE HR+KN + L+ ++ + + RLL+TGTP+ N+
Sbjct: 425 LTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNN 484
Query: 280 LQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339
L+ELWSLLNFL+P IF++ E F+ FN +++ D +Q II +LH +++PF+LR
Sbjct: 485 LKELWSLLNFLMPKIFDNSEEFDNLFNI-----SKISTNDNKQSEIITQLHTILKPFMLR 539
Query: 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRK 399
R K EVE+ LP K ++ + MS QK Y + L+ TG + N+ MQLRK
Sbjct: 540 RLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNIDVLNAMTGSKNQMLNILMQLRK 599
Query: 400 CCNHPYLFVG--EYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILE 457
CCNHPYLF G E +I SGK LLD+LLP+L+K RVLLFSQMTRL+DI++
Sbjct: 600 CCNHPYLFDGIEEPPYIEGNHLIETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIID 659
Query: 458 IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII 517
Y + ++ +LR+DGST +ER + QFN P+S YF+FLLSTRAGG+G+NL TAD VI+
Sbjct: 660 DYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVIL 719
Query: 518 FDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGL 577
FDSD+NPQMD QA DRAHRIGQKK V V+ V+ S+EE I+ERA +K+ +D+ +IQ G
Sbjct: 720 FDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGK 779
Query: 578 FNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKE 637
N S ++ ++ L +I+ G +V ++I+ + SDE+ + D E+R E
Sbjct: 780 LNLNSAKENNKQELHDILNFGAP----EVYKTQDISSI---SDEDIDII-LADAEKRTIE 831
Score = 45 (20.9 bits), Expect = 1.5e-121, Sum P(2) = 1.5e-121
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 614 RLAARSDEEFWLF--EKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
R AR +F F EK+DE + ++ + + ++ ++ + + K+ +K
Sbjct: 958 RAEARGGHDFQFFNVEKLDELEKIEDKWNNYMINQEKINVLIEAQNEEKDYEK 1010
Score = 43 (20.2 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 693 SDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKN 743
+DL+ +A E D S G+ L GN G +KK KN
Sbjct: 858 NDLE-KEASEESTDEEDSSGSGEET-ILEGSGNNDIVEENGVKKKKKKKKN 906
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 1171 (417.3 bits), Expect = 1.5e-121, Sum P(2) = 1.5e-121
Identities = 236/540 (43%), Positives = 343/540 (63%)
Query: 100 EEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 159
E + +QP + G ++ YQLEGL W+ L+ +NGILADEMGLGKT+QTI+L+ YL
Sbjct: 308 EAIILKQPMNING-TMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLCYLRF 366
Query: 160 NKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVL 219
NK + +I+ P++ L NW E W + A Y G D+RK + F+VL
Sbjct: 367 NKNIKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKELNRNLL--HSDFDVL 424
Query: 220 ITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNS 279
+T Y+++++D+ L + W ++++DE HR+KN + L+ ++ + + RLL+TGTP+ N+
Sbjct: 425 LTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNN 484
Query: 280 LQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339
L+ELWSLLNFL+P IF++ E F+ FN +++ D +Q II +LH +++PF+LR
Sbjct: 485 LKELWSLLNFLMPKIFDNSEEFDNLFNI-----SKISTNDNKQSEIITQLHTILKPFMLR 539
Query: 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRK 399
R K EVE+ LP K ++ + MS QK Y + L+ TG + N+ MQLRK
Sbjct: 540 RLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNIDVLNAMTGSKNQMLNILMQLRK 599
Query: 400 CCNHPYLFVG--EYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILE 457
CCNHPYLF G E +I SGK LLD+LLP+L+K RVLLFSQMTRL+DI++
Sbjct: 600 CCNHPYLFDGIEEPPYIEGNHLIETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIID 659
Query: 458 IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII 517
Y + ++ +LR+DGST +ER + QFN P+S YF+FLLSTRAGG+G+NL TAD VI+
Sbjct: 660 DYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVIL 719
Query: 518 FDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGL 577
FDSD+NPQMD QA DRAHRIGQKK V V+ V+ S+EE I+ERA +K+ +D+ +IQ G
Sbjct: 720 FDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGK 779
Query: 578 FNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKE 637
N S ++ ++ L +I+ G +V ++I+ + SDE+ + D E+R E
Sbjct: 780 LNLNSAKENNKQELHDILNFGAP----EVYKTQDISSI---SDEDIDII-LADAEKRTIE 831
Score = 45 (20.9 bits), Expect = 1.5e-121, Sum P(2) = 1.5e-121
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 614 RLAARSDEEFWLF--EKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
R AR +F F EK+DE + ++ + + ++ ++ + + K+ +K
Sbjct: 958 RAEARGGHDFQFFNVEKLDELEKIEDKWNNYMINQEKINVLIEAQNEEKDYEK 1010
Score = 43 (20.2 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 693 SDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKN 743
+DL+ +A E D S G+ L GN G +KK KN
Sbjct: 858 NDLE-KEASEESTDEEDSSGSGEET-ILEGSGNNDIVEENGVKKKKKKKKN 906
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
Identities = 254/582 (43%), Positives = 370/582 (63%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P+ ++GG LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTIAL+ YL + + GP
Sbjct: 178 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 237
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA-MREEFFSERGRFNVLITHYDL 225
H+++ PK+ L NW+NEF W PS+ + + G D R A +R+E G ++V +T Y++
Sbjct: 238 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMP--GEWDVCVTSYEM 295
Query: 226 IMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285
+++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW+
Sbjct: 296 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 355
Query: 286 LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 345
LLNFLLP +FNS ++F+ WF+ K+ L D++ ++ RLH V++PF+LRR K +V
Sbjct: 356 LLNFLLPDVFNSADDFDSWFDT--KN----CLGDQK---LVERLHAVLKPFLLRRIKTDV 406
Query: 346 EKYLPGKSQVILKCDMSAWQKVYYQQVT--DVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 403
EK LP K ++ + +S Q+ +Y ++ D+ + G L N+ MQLRKCCNH
Sbjct: 407 EKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLN-SAGKMDKMRLLNILMQLRKCCNH 465
Query: 404 PYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL 460
PYLF G E I+ SGK +LD+LL KL++ G RVL+FSQMTRL+DILE Y
Sbjct: 466 PYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC 525
Query: 461 KLNDFKFLRLDGSTKTEER--GTL----------LKQFNAPDSPYFMFLLSTRAGGLGLN 508
+++ RLDG T EER G L ++ FN P+S F+F+LSTRAGGLG+N
Sbjct: 526 MWRGYEYCRLDGQTPHEERENGFLQIYFRRRREAIEAFNVPNSSRFIFMLSTRAGGLGIN 585
Query: 509 LQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGI 568
L +AD VI++DSDWNPQ+D QA DRAHRIGQKK VRVF L++ ++EE I+ERA+ K+ +
Sbjct: 586 LASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRL 645
Query: 569 DAKVIQAG-LFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFW 624
D+ VIQ G L + S + EML +++R G + + SE +I L R + +
Sbjct: 646 DSIVIQQGRLIDQQSNKMAKEEML-QMIRHGATHVFASKESELTDEDITTLLERGERKT- 703
Query: 625 LFEKMDEERRQK--ENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
+M+E R QK E+ D E + + D +E+QK
Sbjct: 704 --AEMNE-RLQKMGESSLRNFRMDTEQSLYKFEGEDYREKQK 742
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
Identities = 254/587 (43%), Positives = 372/587 (63%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P+ ++GG LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTIAL+ YL + + GP
Sbjct: 178 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 237
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA-MREEFFSERGRFNVLITHYDL 225
H+++ PK+ L NW+NEF W PS+ + + G D R A +R+E G ++V +T Y++
Sbjct: 238 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMP--GEWDVCVTSYEM 295
Query: 226 IMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285
+++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW+
Sbjct: 296 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLHELWA 355
Query: 286 LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 345
LLNFLLP +FNS E+F+ WF+ K+ L D++ ++ RLH V++PF+LRR K +V
Sbjct: 356 LLNFLLPDVFNSAEDFDSWFDT--KN----CLGDQK---LVERLHTVLKPFLLRRIKTDV 406
Query: 346 EKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NLSMQLRKCCNH 403
EK LP K ++ + +S Q+ +Y ++ + + + GK ++ N+ MQLRKCCNH
Sbjct: 407 EKSLPPKKEIKIYLGLSKMQREWYTKIL-MKDIDVLNSAGKMDKMRLLNILMQLRKCCNH 465
Query: 404 PYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL 460
PYLF G E I+ SGK +LD+LL KL++ G RVL+FSQMTRL+DILE Y
Sbjct: 466 PYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC 525
Query: 461 KLNDFKFLRLDGSTKTEERGTLLKQF-----------------NAPDSPYFMFLLSTRAG 503
+++ RLDG T EER +LK F N P+S F+F+LSTRAG
Sbjct: 526 MWRGYEYCRLDGQTPHEEREEILKDFKIIFHEYQGSNEAIEAFNIPNSSKFIFMLSTRAG 585
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL +AD VI++DSDWNPQ+D QA DRAHRIGQKK VRVF L++ ++EE I+ERA+
Sbjct: 586 GLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAE 645
Query: 564 QKMGIDAKVIQAG-LFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARS 619
K+ +D+ VIQ G L + S + EML +++R G + + SE +I L R
Sbjct: 646 IKLRLDSIVIQQGRLIDQQSNKMAKEEML-QMIRHGATHVFASKESELTDEDITTLLERG 704
Query: 620 DEEFWLFEKMDEERRQK--ENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
+++ +M+E R QK E+ D E + + D +E+QK
Sbjct: 705 EKKT---AEMNE-RLQKMGESSLRNFRMDIEQSLYKFEGEDYREKQK 747
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
Identities = 255/582 (43%), Positives = 369/582 (63%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P+ ++GG LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTIAL+ YL + + GP
Sbjct: 178 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 237
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA-MREEFFSERGRFNVLITHYDL 225
H+++ PK+ L NW+NEF W PS+ + + G D R A +R+E G ++V +T Y++
Sbjct: 238 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMP--GEWDVCVTSYEM 295
Query: 226 IMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285
+++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW+
Sbjct: 296 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 355
Query: 286 LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 345
LLNFLLP +FNS ++F+ WF+ K+ L D++ ++ RLH V++PF+LRR K +V
Sbjct: 356 LLNFLLPDVFNSADDFDSWFDT--KN----CLGDQK---LVERLHAVLKPFLLRRIKTDV 406
Query: 346 EKYLPGKSQVILKCDMSAWQKVYYQQVT--DVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 403
EK LP K ++ + +S Q+ +Y ++ D+ + G L N+ MQLRKCCNH
Sbjct: 407 EKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLN-SAGKMDKMRLLNILMQLRKCCNH 465
Query: 404 PYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL 460
PYLF G E I+ SGK +LD+LL KL++ G RVL+FSQMTRL+DILE Y
Sbjct: 466 PYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC 525
Query: 461 KLNDFKFLRLDGSTKTEERGT------LLKQ------FNAPDSPYFMFLLSTRAGGLGLN 508
+++ RLDG T EER LL Q FN P+S F+F+LSTRAGGLG+N
Sbjct: 526 MWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAFNVPNSSRFIFMLSTRAGGLGIN 585
Query: 509 LQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGI 568
L +AD VI++DSDWNPQ+D QA DRAHRIGQKK VRVF L++ ++EE I+ERA+ K+ +
Sbjct: 586 LASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRL 645
Query: 569 DAKVIQAG-LFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFW 624
D+ VIQ G L + S + EML +++R G + + SE +I L R + +
Sbjct: 646 DSIVIQQGRLIDQQSNKMAKEEML-QMIRHGATHVFASKESELTDEDITTLLERGERKT- 703
Query: 625 LFEKMDEERRQK--ENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
+M+E R QK E+ D E + + D +E+QK
Sbjct: 704 --AEMNE-RLQKMGESSLRNFRMDTEQSLYKFEGEDYREKQK 742
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
Identities = 255/582 (43%), Positives = 369/582 (63%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P+ ++GG LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTIAL+ YL + + GP
Sbjct: 178 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 237
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA-MREEFFSERGRFNVLITHYDL 225
H+++ PK+ L NW+NEF W PS+ + + G D R A +R+E G ++V +T Y++
Sbjct: 238 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMP--GEWDVCVTSYEM 295
Query: 226 IMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285
+++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW+
Sbjct: 296 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 355
Query: 286 LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 345
LLNFLLP +FNS ++F+ WF+ K+ L D++ ++ RLH V++PF+LRR K +V
Sbjct: 356 LLNFLLPDVFNSADDFDSWFDT--KN----CLGDQK---LVERLHAVLKPFLLRRIKTDV 406
Query: 346 EKYLPGKSQVILKCDMSAWQKVYYQQVT--DVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 403
EK LP K ++ + +S Q+ +Y ++ D+ + G L N+ MQLRKCCNH
Sbjct: 407 EKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLN-SAGKMDKMRLLNILMQLRKCCNH 465
Query: 404 PYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL 460
PYLF G E I+ SGK +LD+LL KL++ G RVL+FSQMTRL+DILE Y
Sbjct: 466 PYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC 525
Query: 461 KLNDFKFLRLDGSTKTEERGT------LLKQ------FNAPDSPYFMFLLSTRAGGLGLN 508
+++ RLDG T EER LL Q FN P+S F+F+LSTRAGGLG+N
Sbjct: 526 MWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAFNVPNSSRFIFMLSTRAGGLGIN 585
Query: 509 LQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGI 568
L +AD VI++DSDWNPQ+D QA DRAHRIGQKK VRVF L++ ++EE I+ERA+ K+ +
Sbjct: 586 LASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRL 645
Query: 569 DAKVIQAG-LFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFW 624
D+ VIQ G L + S + EML +++R G + + SE +I L R + +
Sbjct: 646 DSIVIQQGRLIDQQSNKMAKEEML-QMIRHGATHVFASKESELTDEDITTLLERGERKT- 703
Query: 625 LFEKMDEERRQK--ENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
+M+E R QK E+ D E + + D +E+QK
Sbjct: 704 --AEMNE-RLQKMGESSLRNFRMDTEQSLYKFEGEDYREKQK 742
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
Identities = 253/582 (43%), Positives = 372/582 (63%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P+ ++GG LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTIAL+ YL + + GP
Sbjct: 154 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 213
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA-MREEFFSERGRFNVLITHYDL 225
H+++ PK+ L NW+NEF W PS+ + + G D R A +R+E G ++V +T Y++
Sbjct: 214 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMP--GEWDVCVTSYEM 271
Query: 226 IMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285
+++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW+
Sbjct: 272 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 331
Query: 286 LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 345
LLNFLLP +FNS ++F+ WF+ K+ L D++ ++ RLH V++PF+LRR K +V
Sbjct: 332 LLNFLLPDVFNSADDFDSWFDT--KN----CLGDQK---LVERLHAVLKPFLLRRIKTDV 382
Query: 346 EKYLPGKSQVILKCDMSAWQKVYYQQVT--DVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 403
EK LP K ++ + +S Q+ +Y ++ D+ + +G L N+ MQLRKCCNH
Sbjct: 383 EKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLN-SSGKMDKMRLLNILMQLRKCCNH 441
Query: 404 PYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL 460
PYLF G E I+ SGK +LD+LL KL++ G RVL+FSQMTRL+DILE Y
Sbjct: 442 PYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC 501
Query: 461 KLNDFKFLRLDGSTKTEER----------GT--LLKQFNAPDSPYFMFLLSTRAGGLGLN 508
+++ RLDG T EER G ++ FNAP+S F+F+LSTRAGGLG+N
Sbjct: 502 MWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGIN 561
Query: 509 LQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGI 568
L +AD VI++DSDWNPQ+D QA DRAHRIGQKK VRVF L++ ++EE I+ERA+ K+ +
Sbjct: 562 LASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRL 621
Query: 569 DAKVIQAG-LFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFW 624
D+ VIQ G L + S + EML +++R G + + SE +I + R +++
Sbjct: 622 DSIVIQQGRLIDQQSNKLAKEEML-QMIRHGATHVFASKESELTDEDITTILERGEKKT- 679
Query: 625 LFEKMDEERRQK--ENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
+M+E R QK E+ D E + + D +E+QK
Sbjct: 680 --AEMNE-RLQKMGESSLRNFRMDIEQSLYKFEGEDYREKQK 718
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
Identities = 253/582 (43%), Positives = 372/582 (63%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P+ ++GG LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTIAL+ YL + + GP
Sbjct: 175 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 234
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA-MREEFFSERGRFNVLITHYDL 225
H+++ PK+ L NW+NEF W PS+ + + G D R A +R+E G ++V +T Y++
Sbjct: 235 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMP--GEWDVCVTSYEM 292
Query: 226 IMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285
+++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW+
Sbjct: 293 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 352
Query: 286 LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 345
LLNFLLP +FNS ++F+ WF+ K+ L D++ ++ RLH V++PF+LRR K +V
Sbjct: 353 LLNFLLPDVFNSADDFDSWFDT--KN----CLGDQK---LVERLHAVLKPFLLRRIKTDV 403
Query: 346 EKYLPGKSQVILKCDMSAWQKVYYQQVT--DVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 403
EK LP K ++ + +S Q+ +Y ++ D+ + +G L N+ MQLRKCCNH
Sbjct: 404 EKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLN-SSGKMDKMRLLNILMQLRKCCNH 462
Query: 404 PYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL 460
PYLF G E I+ SGK +LD+LL KL++ G RVL+FSQMTRL+DILE Y
Sbjct: 463 PYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC 522
Query: 461 KLNDFKFLRLDGSTKTEER----------GT--LLKQFNAPDSPYFMFLLSTRAGGLGLN 508
+++ RLDG T EER G ++ FNAP+S F+F+LSTRAGGLG+N
Sbjct: 523 MWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGIN 582
Query: 509 LQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGI 568
L +AD VI++DSDWNPQ+D QA DRAHRIGQKK VRVF L++ ++EE I+ERA+ K+ +
Sbjct: 583 LASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRL 642
Query: 569 DAKVIQAG-LFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFW 624
D+ VIQ G L + S + EML +++R G + + SE +I + R +++
Sbjct: 643 DSIVIQQGRLIDQQSNKLAKEEML-QMIRHGATHVFASKESELTDEDITTILERGEKKT- 700
Query: 625 LFEKMDEERRQK--ENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
+M+E R QK E+ D E + + D +E+QK
Sbjct: 701 --AEMNE-RLQKMGESSLRNFRMDIEQSLYKFEGEDYREKQK 739
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 1159 (413.0 bits), Expect = 2.9e-120, Sum P(2) = 2.9e-120
Identities = 251/545 (46%), Positives = 351/545 (64%)
Query: 102 KVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
K+ QP+ + G LR YQ+EGL W++ + NN N ILADEMGLGKTIQTI+ ++YL +
Sbjct: 742 KLDTQPSWISAGTLRDYQMEGLNWLVHSWMNNTNVILADEMGLGKTIQTISFLSYLFNEQ 801
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR-EEFFSER--GR--- 215
+ GP ++V P + + NW EF+ WAP++ +VY G R +R EF++ G+
Sbjct: 802 DIKGPFLVVVPLSTIENWQREFAKWAPAMNVIVYTGTGQSRDIIRLYEFYTTNRLGKKKL 861
Query: 216 -FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGT 274
FNVL+T YD I++D+ L ++W ++ VDE HRLKN E L + + Y RLL+TGT
Sbjct: 862 NFNVLLTTYDFILKDKNTLGTIKWEFLAVDEAHRLKNSESVLHEVLKLYNTTNRLLVTGT 921
Query: 275 PIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIR 334
P+QNSL+ELW+LLNFL+P F S+++F++ ++ K+ Q+A +LH V++
Sbjct: 922 PLQNSLKELWNLLNFLMPNKFTSLKDFQDQYS-DLKENDQIA-----------QLHSVLK 969
Query: 335 PFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLS 394
P +LRR K +VEK LP K++ IL+ D+S QK YY+ + L+ G G+ +L N+
Sbjct: 970 PHLLRRIKKDVEKSLPPKTERILRVDLSNVQKKYYKWILTKNFQELNKGKGEKTTLLNIM 1029
Query: 395 MQLRKCCNHPYLFVG---EYNMWRKE---EIIRASGKFELLDRLLPKLRKSGHRVLLFSQ 448
+L+K CNHPYL+ E + K+ +IRASGK LLD+LL +L+++GHRVL+FSQ
Sbjct: 1030 TELKKTCNHPYLYQNARDECELGAKDLLDSMIRASGKLVLLDKLLIRLKETGHRVLIFSQ 1089
Query: 449 MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLN 508
M R++DIL YLK F+F RLDGS E+R + +FNA DSP F FLLST+AGGLG+N
Sbjct: 1090 MVRMLDILADYLKGRSFQFQRLDGSMSREKRSQAMDRFNAVDSPDFCFLLSTKAGGLGIN 1149
Query: 509 LQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGI 568
L TADTVIIFDSDWNPQ D QAE RAHRIGQK V ++ LVS S+EE ILERAKQKM +
Sbjct: 1150 LSTADTVIIFDSDWNPQNDLQAEARAHRIGQKNHVNIYRLVSKSSVEEDILERAKQKMVL 1209
Query: 569 DAKVIQA------GLFNTTSTAQD-RREMLKEIMRRGTSSL----GTDV-P-SEREINRL 615
D VIQ NT + + +E L+ I++ G L G + P E +I+ +
Sbjct: 1210 DHLVIQTMEKSQTAKSNTPNNSNVFNKEELEAILKFGAEELFKETGEEANPIEEMDIDEI 1269
Query: 616 AARSD 620
+R++
Sbjct: 1270 LSRAE 1274
Score = 64 (27.6 bits), Expect = 2.9e-120, Sum P(2) = 2.9e-120
Identities = 45/210 (21%), Positives = 83/210 (39%)
Query: 594 IMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWA 653
+ RR S L + + N+ +++ +E E+ + + +K +S+ E EV
Sbjct: 1545 LQRRVDSLLKSAKDISKTTNKKSSKQTKEK---EEGEFKIPKKRGRKSK--EIKEVSNNN 1599
Query: 654 YSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISK---- 709
++ + KE G + ++S +++ Y+D D K +N +D +
Sbjct: 1600 HNNKETKENNNGDNNNNNNNNNSSNNRKRTTNNKYSDDDDDDDNDKDNDNDEDYMEEEEK 1659
Query: 710 ----LSTRGKRR---EYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAP 762
+TR K+R E L E S G + E P S T+ T S+
Sbjct: 1660 KEKTKNTRTKKRIKSEELQKEILSPKKTSFGRLSVPPNKMGERSPSKSTTTTTTTTTSSS 1719
Query: 763 KRLRFERRNSESSDIQSVEKSEHKGVQGSG 792
K R + +S+ D +K + G +G G
Sbjct: 1720 KSSRNSKHHSDDDDDDYRDKDSNSG-RGRG 1748
Score = 43 (20.2 bits), Expect = 4.8e-118, Sum P(2) = 4.8e-118
Identities = 24/116 (20%), Positives = 46/116 (39%)
Query: 631 EERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRK--RKEVVY 688
++R + E + ++ + S P NK ++ K +++ T K R +
Sbjct: 1669 KKRIKSEELQKEILSPKKTSFGRLSVPPNKMGERSPSKSTTTTTTTTTSSSKSSRNSKHH 1728
Query: 689 ADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNE 744
+D D + +D S RG+ R N S+S+S+ + KN + E
Sbjct: 1729 SDDDDD--------DYRDKDSNSGRGRGRG---RSSNSSSSSSSSSRNKNHESDEE 1773
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 1166 (415.5 bits), Expect = 3.6e-120, Sum P(2) = 3.6e-120
Identities = 240/529 (45%), Positives = 343/529 (64%)
Query: 104 TEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
T P ++ G +R YQ+ GL W++ L+ +NGILADEMGLGKT+QTI+L+ YL E KG+
Sbjct: 265 TSSPPYIKSGTMRDYQVYGLNWLIQLYERGINGILADEMGLGKTLQTISLLGYLSEYKGI 324
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+I+APK+ L W EF+ W P + V + G +ER+ +++ + +F+V IT Y
Sbjct: 325 RGPHLIIAPKSTLSGWAKEFTRWCPFLRVVRFHGSKEEREDIKKNQLIFK-KFDVCITTY 383
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++ +R++ KK W Y+I+DE HR+KN L+K + + Q RLL+TGTP+QN+L EL
Sbjct: 384 EVAIREKSTFKKFSWRYIIIDEAHRIKNENSVLSKGVRMFNSQFRLLITGTPLQNNLHEL 443
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343
WSLLNFLLP +F+S ++F++WF+ +A E Q +I +LH V+RPF+LRR K
Sbjct: 444 WSLLNFLLPDVFSSSDDFDKWFD--------LANNTENQQEVIDKLHKVLRPFLLRRIKT 495
Query: 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVT----DVGRVGLDTGTGKSKSLQNLSMQLRK 399
EVEK LP K ++ L +S QK +Y+++ D VG TG+ + L N+ MQLRK
Sbjct: 496 EVEKSLPPKKEIKLFVGLSTMQKEWYKRLLSKDLDAVVVGAKGNTGRVRLL-NICMQLRK 554
Query: 400 CCNHPYLFVG--EYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILE 457
CNHPYLF G E E +I SGK LLD+LL KL++ G RVL+FSQM+R++DILE
Sbjct: 555 ACNHPYLFDGAEEEPYTTGEHLIDNSGKMALLDKLLKKLKERGSRVLIFSQMSRMLDILE 614
Query: 458 IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII 517
Y+ +K+ R+DGST++ R ++ +N P S F FLL+TRAGGLG+ L TAD VI+
Sbjct: 615 DYMLYRGYKYARIDGSTESIVRENSIENYNKPGSDLFAFLLTTRAGGLGITLNTADIVIL 674
Query: 518 FDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG- 576
FDSDWNPQMD QA+DRAHRIGQ K V V+ V+ S+EE ++E+A+ K+ +DA VIQ G
Sbjct: 675 FDSDWNPQMDLQAQDRAHRIGQTKPVTVYRFVTENSMEEKMVEKAEMKLQLDALVIQQGR 734
Query: 577 LFNTTSTAQDRREMLKEIMRRGTSSLGTDVPS---EREINRLAARSDEE 622
L A+ E L ++R G + S + +I+ + + +E+
Sbjct: 735 LVEANKNAKP--EELLAMLRFGADDIFKSKSSTITDEDIDSILKKGEEK 781
Score = 37 (18.1 bits), Expect = 3.6e-120, Sum P(2) = 3.6e-120
Identities = 15/75 (20%), Positives = 27/75 (36%)
Query: 712 TRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIF--PLASEGTSEDTFGSAPKRLRFER 769
T GKR++ PS+ S ++ K K P + G + + E
Sbjct: 1137 TLGKRKDAPPSKPPAKPSKASAKSKPAPKSKTSTTTKPTTTNGRGKKK--PVEEEEPMEE 1194
Query: 770 RNSESSDIQSVEKSE 784
E +++ E+ E
Sbjct: 1195 EEEEEEEVEEEEEEE 1209
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 1178 (419.7 bits), Expect = 1.1e-119, P = 1.1e-119
Identities = 240/570 (42%), Positives = 365/570 (64%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
E P+ ++ G+LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTI+L+ Y+ + +
Sbjct: 155 ESPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 214
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYD 224
GPH+++ PK+ L NW+NEF W P++ AV G D+R A + G ++V +T Y+
Sbjct: 215 GPHMVLVPKSTLHNWMNEFKRWVPTLRAVCLIGDKDQRAAFVRDVLLP-GEWDVCVTSYE 273
Query: 225 LIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELW 284
++++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW
Sbjct: 274 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 333
Query: 285 SLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344
+LLNFLLP +FNS E+F+ WF+ L D++ ++ RLH V+RPF+LRR K +
Sbjct: 334 ALLNFLLPDVFNSSEDFDSWFDT------NNCLGDQK---LVERLHMVLRPFLLRRIKAD 384
Query: 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NLSMQLRKCCN 402
VEK LP K +V + +S Q+ +Y ++ + + + GK ++ N+ MQLRKCCN
Sbjct: 385 VEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDIDILNSAGKLDKMRLLNILMQLRKCCN 443
Query: 403 HPYLFVGEYN--MWRKE-EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIY 459
HPYLF G + + ++ SGK +LD+LLPKL++ G RVL+FSQMTR++DILE Y
Sbjct: 444 HPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDY 503
Query: 460 LKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFD 519
++++ RLDG T +ER + +N P S F+F+LSTRAGGLG+NL TAD VI++D
Sbjct: 504 CMWRNYEYCRLDGQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGINLATADVVILYD 563
Query: 520 SDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG-LF 578
SDWNPQ+D QA DRAHRIGQ K VRVF ++ ++EE I+ERA+ K+ +D+ VIQ G L
Sbjct: 564 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLV 623
Query: 579 NTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLFEKMDEE-RR 634
+ + EML +++R G + + SE +I+ + R ++ +M+E+ +
Sbjct: 624 DQNLNKLGKDEML-QMIRHGATHVFASKESEITDEDIDHILERGAKKT---AEMNEKLSK 679
Query: 635 QKENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
E+ D E + + D +E+QK
Sbjct: 680 MGESSLRNFTMDTESSVYNFEGEDYREKQK 709
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 1178 (419.7 bits), Expect = 1.1e-119, P = 1.1e-119
Identities = 267/679 (39%), Positives = 399/679 (58%)
Query: 98 SIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYL 157
S E E P +QG +R YQ+ GL W++SL N ++GILADEMGLGKT+QTI+ + YL
Sbjct: 170 SAETVFRESPAFIQG-TMRDYQIAGLNWLISLHENGISGILADEMGLGKTLQTISFLGYL 228
Query: 158 LENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFN 217
G+TGPH+++ PK+ L NW EF W P + +V G +ER A+ E + F+
Sbjct: 229 RHIMGITGPHLVIVPKSTLDNWKREFGKWTPEVNVLVLQGAKEERAALIAERLVDES-FD 287
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
V IT Y++I+R++ +LKK W Y+I+DE HR+KN E +LA+ I + + RLL+TGTP+Q
Sbjct: 288 VCITSYEMILREKSHLKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQ 347
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
N++ ELW+LLNFLLP +F E F++WF+ GQ D + ++++LH V+RPF+
Sbjct: 348 NNIHELWALLNFLLPDVFGDSEAFDQWFSG----EGQ----DSDT--VVQQLHRVLRPFL 397
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT--DVGRVGLDTGTGKSKS-LQNLS 394
LRR K +VEK L K +V L M+ Q+ +YQ++ D+ V G +SK+ L N+
Sbjct: 398 LRRVKADVEKSLLPKKEVNLYLKMTEMQRTWYQKILEKDIDAVNGANGKRESKTRLLNIV 457
Query: 395 MQLRKCCNHPYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTR 451
MQLRKCCNHPYLF G E ++ SGK +LD+LL +L+ G RVL+FSQM+R
Sbjct: 458 MQLRKCCNHPYLFEGAEPGPPYTTDEHLVYNSGKMVVLDKLLKRLKAQGSRVLIFSQMSR 517
Query: 452 LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 511
++DILE Y ++K+ R+DG T E+R + ++N P S F+FLL+TRAGGLG+NL T
Sbjct: 518 VLDILEDYCVFREYKYSRIDGGTAHEDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTT 577
Query: 512 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 571
AD VI+FDSDWNPQ D QA DRAHRIGQ K+V V+ + +IEE +LERA QK+ +D
Sbjct: 578 ADIVILFDSDWNPQADLQAMDRAHRIGQTKQVYVYRFLVDNTIEEKVLERAAQKLHLDRL 637
Query: 572 VIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAAR-SDEEFWLFEKMD 630
VIQ G + A ++ L +++ G + + + S+ ++ + A D++
Sbjct: 638 VIQQGRAQVAAKAAANKDELLSMIQHGAAKV-FNKDSDGDVVKSADDIQDDDIEAMLASG 696
Query: 631 EERRQKENYRSRLMEDHEVPEWAY-SAPD-NKEEQKGFEKGFGHESSSIT-GKRKRKEVV 687
E R ++ N R + ++ +++ SA D N E K ++ I KR+RKE
Sbjct: 697 ESRTRELNARYEKLGIDDLQKFSSESAYDWNGENFALVNKSKDIGANWINPAKRERKEQT 756
Query: 688 YADTLSDLQWMKAV--ENGQ--DISKLSTRGKRR------EYLPSEGNESASNSTGAEKK 737
Y+ D + +A+ GQ ++ + R ++ ++ P E + T +K
Sbjct: 757 YS---VDKYYRQAIYGHTGQPKEVKPKAPRPPKQVHIQDYQFFPPELRDLQDRETAFYRK 813
Query: 738 NLDMKNEIFPLASEGTSED 756
+ K + P + T D
Sbjct: 814 EIGYKVPL-PDGDDATLSD 831
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
Identities = 246/582 (42%), Positives = 367/582 (63%)
Query: 93 NSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIA 152
NS S+ + + P+ ++ G+LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTI+
Sbjct: 141 NSKATSVCTRFDDSPSYVKTGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTIS 200
Query: 153 LIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA-MREEFFS 211
L+ Y+ + + GPH+++ PK+ L NW+NEF W PS+ AV G +ER A +R+
Sbjct: 201 LLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLKAVCLIGDREERTAFIRDTLLP 260
Query: 212 ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLL 271
G ++V +T Y++++ +R KK W Y+++DE HR+KN + L++ + ++ RLLL
Sbjct: 261 --GEWDVCVTSYEMLIIERAVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLL 318
Query: 272 TGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHH 331
TGTP+QN+L ELW+LLNFLLP +FNS E+F+ WF+ L D + ++ RLH
Sbjct: 319 TGTPLQNNLHELWALLNFLLPDVFNSSEDFDAWFDT------NNCLGDTK---LVERLHT 369
Query: 332 VIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ 391
V+RPF+LRR K +VEK L K ++ + +S Q+ +Y ++ + + + GK ++
Sbjct: 370 VLRPFLLRRIKADVEKSLLPKKEIKIYVGLSKMQREWYTKIL-MKDIDILNSAGKMDKMR 428
Query: 392 --NLSMQLRKCCNHPYLFVGEYN--MWRKE-EIIRASGKFELLDRLLPKLRKSGHRVLLF 446
N+ MQLRKCCNHPYLF G + + ++ SGK +LD+LLPKL++ G RVL+F
Sbjct: 429 LLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPKLKEQGSRVLIF 488
Query: 447 SQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLG 506
SQMTR++DILE Y ++ + RLDG T EER + FN P+S F+F+LSTRAGGLG
Sbjct: 489 SQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINAFNEPNSSKFLFMLSTRAGGLG 548
Query: 507 LNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM 566
+NL TAD VII+DSDWNPQ+D QA DRAHRIGQKK+VRVF ++ ++EE I+ERA+ K+
Sbjct: 549 INLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITDNTVEERIVERAEMKL 608
Query: 567 GIDAKVIQAG-LFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEE 622
+D+ VIQ G L + + + EML I+R G + + SE +I+ + R + +
Sbjct: 609 RLDSIVIQQGRLVDPSMNKLGKDEMLS-IIRHGATHVFASKESEITDEDIDGILERGERK 667
Query: 623 FWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
E ++ E D E + + D +E++K
Sbjct: 668 --TMEMKEKMANLGEGSLRNFTMDTENSVYNFEGEDYREKKK 707
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
Identities = 251/582 (43%), Positives = 370/582 (63%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P+ ++GG LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTIAL+ YL + GP
Sbjct: 155 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNFPGP 214
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA-MREEFFSERGRFNVLITHYDL 225
H+++ PK+ L NW+NEF W PS+ + + G D R A +R+E G ++V +T Y++
Sbjct: 215 HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMP--GEWDVCVTSYEM 272
Query: 226 IMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285
+++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW+
Sbjct: 273 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 332
Query: 286 LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 345
LLNFLLP +FNS ++F+ WF+ K+ L D++ ++ RLH V++PF+LRR K +V
Sbjct: 333 LLNFLLPDVFNSADDFDSWFDT--KN----CLGDQK---LVERLHAVLKPFLLRRIKTDV 383
Query: 346 EKYLPGKSQVILKCDMSAWQKVYYQQVT--DVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 403
EK LP K ++ + +S Q+ +Y ++ D+ + +G L N+ MQLRKCCNH
Sbjct: 384 EKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLN-SSGKMDKMRLLNILMQLRKCCNH 442
Query: 404 PYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL 460
PYLF G E I+ SGK LD+LL ++++ G RVL+FSQMTRL+DILE Y
Sbjct: 443 PYLFDGAEPGPPYTTDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYC 502
Query: 461 KLNDFKFLRLDGSTKTEERGTL------------LKQFNAPDSPYFMFLLSTRAGGLGLN 508
+++ RLDG T EER L ++ FNAP+S F+F+LSTRAGGLG+N
Sbjct: 503 MWRGYEYCRLDGQTPHEERENLFLHKHNLFSTEAIEAFNAPNSSKFIFMLSTRAGGLGIN 562
Query: 509 LQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGI 568
L +AD VI++DSDWNPQ+D QA DRAHRIGQKK VRVF L++ ++EE I+ERA+ K+ +
Sbjct: 563 LASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRL 622
Query: 569 DAKVIQAG-LFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFW 624
D+ VIQ G L + S + EML +++R G + + SE +I + R +++
Sbjct: 623 DSIVIQQGRLIDQQSNKLAKEEML-QMIRHGATHVFACKESELTDEDIVTILERGEKKT- 680
Query: 625 LFEKMDEERRQK--ENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
+M+E R QK E+ D E + + D +E+QK
Sbjct: 681 --AEMNE-RMQKMGESSLRNFRMDLEQSLYKFEGEDYREKQK 719
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 1151 (410.2 bits), Expect = 4.1e-119, Sum P(2) = 4.1e-119
Identities = 237/532 (44%), Positives = 349/532 (65%)
Query: 98 SIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYL 157
SIE + E P + G +LR YQ++G+ W++SL N + GILADEMGLGKT+QTI+ + YL
Sbjct: 180 SIEFQFRESPAYVNG-QLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYL 238
Query: 158 LENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFN 217
+ + GP +++APK+ L NW+ E + W P + A + G +ER + ++ F+
Sbjct: 239 RYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKLLGCD-FD 297
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
V+I Y++I+R++ LKK+ W Y+I+DE HR+KN E L++ + + + RLL+TGTP+Q
Sbjct: 298 VVIASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQ 357
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
N+L ELW+LLNFLLP IF+ ++F++WF++ T+E+Q I+++LH V++PF+
Sbjct: 358 NNLHELWALLNFLLPDIFSDAQDFDDWFSSES--------TEEDQDKIVKQLHTVLQPFL 409
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT--DVGRVGLDTGTGKSKS-LQNLS 394
LRR K +VE L K ++ L MS+ QK +Y+++ D+ V G+ +SK+ L N+
Sbjct: 410 LRRIKSDVETSLLPKKELNLYVGMSSMQKKWYKKILEKDLDAVNGSNGSKESKTRLLNIM 469
Query: 395 MQLRKCCNHPYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTR 451
MQLRKCCNHPYLF G E ++ + K ++LD+LL KL++ G RVL+FSQM+R
Sbjct: 470 MQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSR 529
Query: 452 LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 511
L+DILE Y ++++ R+DGST E+R + +NAPDS F+FLL+TRAGGLG+NL +
Sbjct: 530 LLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTS 589
Query: 512 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 571
AD V+++DSDWNPQ D QA DRAHRIGQKK+V+VF LV+ S+EE ILERA QK+ +D
Sbjct: 590 ADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQL 649
Query: 572 VIQ---AGLFNTTSTAQDRREMLK-------EIMRRGTS--SLGTDVPSERE 611
VIQ L + A + +L ++ + GTS S GT P E
Sbjct: 650 VIQQNRTSLKKKENKADSKDALLSMIQHGAADVFKSGTSTGSAGTPEPGSGE 701
Score = 42 (19.8 bits), Expect = 4.1e-119, Sum P(2) = 4.1e-119
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 684 KEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKN 743
K+ Y T+ D+ KA DIS + ++ E L N S + EK D ++
Sbjct: 827 KKTGYVPTMDDV---KAAYG--DISDEEEKKQKLELLKLSVNNSQPLTEEEEKMKADWES 881
Query: 744 EIF 746
E F
Sbjct: 882 EGF 884
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 236/570 (41%), Positives = 366/570 (64%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
+ P+ ++ G+LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTI+L+ Y+ + +
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYD 224
GPH+++ PK+ L NW++EF W P++ +V G ++R A + G ++V +T Y+
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLP-GEWDVCVTSYE 288
Query: 225 LIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELW 284
++++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW
Sbjct: 289 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 348
Query: 285 SLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344
SLLNFLLP +FNS ++F+ WF+ L D++ ++ RLH V+RPF+LRR K +
Sbjct: 349 SLLNFLLPDVFNSADDFDSWFDT------NNCLGDQK---LVERLHMVLRPFLLRRIKAD 399
Query: 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NLSMQLRKCCN 402
VEK LP K +V + +S Q+ +Y ++ + + + GK ++ N+ MQLRKCCN
Sbjct: 400 VEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNILMQLRKCCN 458
Query: 403 HPYLFVGEYN--MWRKE-EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIY 459
HPYLF G + + ++ SGK +LD+LLPKL++ G RVL+FSQMTR++DILE Y
Sbjct: 459 HPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDY 518
Query: 460 LKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFD 519
++++ RLDG T +ER + +N P+S F+F+LSTRAGGLG+NL TAD VI++D
Sbjct: 519 CMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYD 578
Query: 520 SDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG-LF 578
SDWNPQ+D QA DRAHRIGQ K VRVF ++ ++EE I+ERA+ K+ +D+ VIQ G L
Sbjct: 579 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLV 638
Query: 579 NTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLFEKMDEE-RR 634
+ + EML +++R G + + SE +I+ + R ++ +M+E+ +
Sbjct: 639 DQNLNKIGKDEML-QMIRHGATHVFASKESEITDEDIDGILERGAKKT---AEMNEKLSK 694
Query: 635 QKENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
E+ D E + + D +E+QK
Sbjct: 695 MGESSLRNFTMDTESSVYNFEGEDYREKQK 724
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 236/570 (41%), Positives = 366/570 (64%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
+ P+ ++ G+LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTI+L+ Y+ + +
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYD 224
GPH+++ PK+ L NW++EF W P++ +V G ++R A + G ++V +T Y+
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLP-GEWDVCVTSYE 288
Query: 225 LIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELW 284
++++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW
Sbjct: 289 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 348
Query: 285 SLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344
SLLNFLLP +FNS ++F+ WF+ L D++ ++ RLH V+RPF+LRR K +
Sbjct: 349 SLLNFLLPDVFNSADDFDSWFDT------NNCLGDQK---LVERLHMVLRPFLLRRIKAD 399
Query: 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NLSMQLRKCCN 402
VEK LP K +V + +S Q+ +Y ++ + + + GK ++ N+ MQLRKCCN
Sbjct: 400 VEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNILMQLRKCCN 458
Query: 403 HPYLFVGEYN--MWRKE-EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIY 459
HPYLF G + + ++ SGK +LD+LLPKL++ G RVL+FSQMTR++DILE Y
Sbjct: 459 HPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDY 518
Query: 460 LKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFD 519
++++ RLDG T +ER + +N P+S F+F+LSTRAGGLG+NL TAD VI++D
Sbjct: 519 CMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYD 578
Query: 520 SDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG-LF 578
SDWNPQ+D QA DRAHRIGQ K VRVF ++ ++EE I+ERA+ K+ +D+ VIQ G L
Sbjct: 579 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLV 638
Query: 579 NTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLFEKMDEE-RR 634
+ + EML +++R G + + SE +I+ + R ++ +M+E+ +
Sbjct: 639 DQNLNKIGKDEML-QMIRHGATHVFASKESEITDEDIDGILERGAKKT---AEMNEKLSK 694
Query: 635 QKENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
E+ D E + + D +E+QK
Sbjct: 695 MGESSLRNFTMDTESSVYNFEGEDYREKQK 724
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 236/570 (41%), Positives = 366/570 (64%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
+ P+ ++ G+LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTI+L+ Y+ + +
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYD 224
GPH+++ PK+ L NW++EF W P++ +V G ++R A + G ++V +T Y+
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLP-GEWDVCVTSYE 288
Query: 225 LIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELW 284
++++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW
Sbjct: 289 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 348
Query: 285 SLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344
SLLNFLLP +FNS ++F+ WF+ L D++ ++ RLH V+RPF+LRR K +
Sbjct: 349 SLLNFLLPDVFNSADDFDSWFDT------NNCLGDQK---LVERLHMVLRPFLLRRIKAD 399
Query: 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NLSMQLRKCCN 402
VEK LP K +V + +S Q+ +Y ++ + + + GK ++ N+ MQLRKCCN
Sbjct: 400 VEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNILMQLRKCCN 458
Query: 403 HPYLFVGEYN--MWRKE-EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIY 459
HPYLF G + + ++ SGK +LD+LLPKL++ G RVL+FSQMTR++DILE Y
Sbjct: 459 HPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDY 518
Query: 460 LKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFD 519
++++ RLDG T +ER + +N P+S F+F+LSTRAGGLG+NL TAD VI++D
Sbjct: 519 CMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYD 578
Query: 520 SDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG-LF 578
SDWNPQ+D QA DRAHRIGQ K VRVF ++ ++EE I+ERA+ K+ +D+ VIQ G L
Sbjct: 579 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLV 638
Query: 579 NTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLFEKMDEE-RR 634
+ + EML +++R G + + SE +I+ + R ++ +M+E+ +
Sbjct: 639 DQNLNKIGKDEML-QMIRHGATHVFASKESEITDEDIDGILERGAKKT---AEMNEKLSK 694
Query: 635 QKENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
E+ D E + + D +E+QK
Sbjct: 695 MGESSLRNFTMDTESSVYNFEGEDYREKQK 724
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 236/570 (41%), Positives = 366/570 (64%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
+ P+ ++ G+LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTI+L+ Y+ + +
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYD 224
GPH+++ PK+ L NW++EF W P++ +V G ++R A + G ++V +T Y+
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLP-GEWDVCVTSYE 288
Query: 225 LIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELW 284
++++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW
Sbjct: 289 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 348
Query: 285 SLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344
SLLNFLLP +FNS ++F+ WF+ L D++ ++ RLH V+RPF+LRR K +
Sbjct: 349 SLLNFLLPDVFNSADDFDSWFDT------NNCLGDQK---LVERLHMVLRPFLLRRIKAD 399
Query: 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NLSMQLRKCCN 402
VEK LP K +V + +S Q+ +Y ++ + + + GK ++ N+ MQLRKCCN
Sbjct: 400 VEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNILMQLRKCCN 458
Query: 403 HPYLFVGEYN--MWRKE-EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIY 459
HPYLF G + + ++ SGK +LD+LLPKL++ G RVL+FSQMTR++DILE Y
Sbjct: 459 HPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDY 518
Query: 460 LKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFD 519
++++ RLDG T +ER + +N P+S F+F+LSTRAGGLG+NL TAD VI++D
Sbjct: 519 CMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYD 578
Query: 520 SDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG-LF 578
SDWNPQ+D QA DRAHRIGQ K VRVF ++ ++EE I+ERA+ K+ +D+ VIQ G L
Sbjct: 579 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLV 638
Query: 579 NTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLFEKMDEE-RR 634
+ + EML +++R G + + SE +I+ + R ++ +M+E+ +
Sbjct: 639 DQNLNKIGKDEML-QMIRHGATHVFASKESEITDEDIDGILERGAKKT---AEMNEKLSK 694
Query: 635 QKENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
E+ D E + + D +E+QK
Sbjct: 695 MGESSLRNFTMDTESSVYNFEGEDYREKQK 724
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 236/570 (41%), Positives = 366/570 (64%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
+ P+ ++ G+LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTI+L+ Y+ + +
Sbjct: 169 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 228
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYD 224
GPH+++ PK+ L NW++EF W P++ +V G ++R A + G ++V +T Y+
Sbjct: 229 GPHMVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLP-GEWDVCVTSYE 287
Query: 225 LIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELW 284
++++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW
Sbjct: 288 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 347
Query: 285 SLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344
SLLNFLLP +FNS ++F+ WF+ L D++ ++ RLH V+RPF+LRR K +
Sbjct: 348 SLLNFLLPDVFNSADDFDSWFDT------NNCLGDQK---LVERLHMVLRPFLLRRIKAD 398
Query: 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NLSMQLRKCCN 402
VEK LP K +V + +S Q+ +Y ++ + + + GK ++ N+ MQLRKCCN
Sbjct: 399 VEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNILMQLRKCCN 457
Query: 403 HPYLFVGEYN--MWRKE-EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIY 459
HPYLF G + + ++ SGK +LD+LLPKL++ G RVL+FSQMTR++DILE Y
Sbjct: 458 HPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDY 517
Query: 460 LKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFD 519
++++ RLDG T +ER + +N P+S F+F+LSTRAGGLG+NL TAD VI++D
Sbjct: 518 CMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYD 577
Query: 520 SDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG-LF 578
SDWNPQ+D QA DRAHRIGQ K VRVF ++ ++EE I+ERA+ K+ +D+ VIQ G L
Sbjct: 578 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLV 637
Query: 579 NTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLFEKMDEE-RR 634
+ + EML +++R G + + SE +I+ + R ++ +M+E+ +
Sbjct: 638 DQNLNKIGKDEML-QMIRHGATHVFASKESEITDEDIDGILERGAKKT---AEMNEKLSK 693
Query: 635 QKENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
E+ D E + + D +E+QK
Sbjct: 694 MGESSLRNFTMDTESSVYNFEGEDYREKQK 723
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 236/570 (41%), Positives = 366/570 (64%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
+ P+ ++ G+LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTI+L+ Y+ + +
Sbjct: 169 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 228
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYD 224
GPH+++ PK+ L NW++EF W P++ +V G ++R A + G ++V +T Y+
Sbjct: 229 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLP-GEWDVCVTSYE 287
Query: 225 LIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELW 284
++++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW
Sbjct: 288 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 347
Query: 285 SLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344
SLLNFLLP +FNS ++F+ WF+ L D++ ++ RLH V+RPF+LRR K +
Sbjct: 348 SLLNFLLPDVFNSADDFDSWFDT------NNCLGDQK---LVERLHMVLRPFLLRRIKAD 398
Query: 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NLSMQLRKCCN 402
VEK LP K +V + +S Q+ +Y ++ + + + GK ++ N+ MQLRKCCN
Sbjct: 399 VEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNILMQLRKCCN 457
Query: 403 HPYLFVGEYN--MWRKE-EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIY 459
HPYLF G + + ++ SGK +LD+LLPKL++ G RVL+FSQMTR++DILE Y
Sbjct: 458 HPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDY 517
Query: 460 LKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFD 519
++++ RLDG T +ER + +N P+S F+F+LSTRAGGLG+NL TAD VI++D
Sbjct: 518 CMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYD 577
Query: 520 SDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG-LF 578
SDWNPQ+D QA DRAHRIGQ K VRVF ++ ++EE I+ERA+ K+ +D+ VIQ G L
Sbjct: 578 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLV 637
Query: 579 NTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLFEKMDEE-RR 634
+ + EML +++R G + + SE +I+ + R ++ +M+E+ +
Sbjct: 638 DQNLNKIGKDEML-QMIRHGATHVFASKESEITDEDIDGILERGAKKT---AEMNEKLSK 693
Query: 635 QKENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
E+ D E + + D +E+QK
Sbjct: 694 MGESSLRNFTMDTESSVYNFEGEDYREKQK 723
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
Identities = 272/717 (37%), Positives = 418/717 (58%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
LL+ + + H +TE P+ ++ G+LR YQ++GL W++SL+ N L+GILADEMGL
Sbjct: 110 LLQDEEHQDDEDHQ-HTVMTESPSYIKEGKLREYQIQGLNWLISLYENRLSGILADEMGL 168
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKT+QTI+ + YL K + GP +++ PK+ L NW EF+ W P + VV G ++R +
Sbjct: 169 GKTLQTISFLGYLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRAS 228
Query: 205 M-REEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY 263
+ +++ ++ +F+VLIT +++I+R++ L+K +W Y++VDE HR+KN + +L+K I +
Sbjct: 229 IIKDQLYT--AKFDVLITSFEMILREKSALQKFRWEYIVVDEAHRIKNEDSSLSKIIRLF 286
Query: 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQL 323
+ RLL+TGTP+QN+L ELW+LLNFLLP +F + F+E F+ + Q
Sbjct: 287 YSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAFDNQNSEELDEEEKQRRQD 346
Query: 324 LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT--DVGRVGLD 381
+ LH ++ PF+LRR K +VEK L K + + M+ Q +Y+++ D+ V
Sbjct: 347 KAVSELHQLLSPFLLRRVKADVEKSLLPKIETNVYIGMTDMQVEWYKRLLEKDIDAVNGV 406
Query: 382 TGTGKSKS-LQNLSMQLRKCCNHPYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLR 437
G + K+ L N+ MQLRKCCNHPYLF G E ++ SGK +LD++L K +
Sbjct: 407 VGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNSGKMIILDKMLKKFK 466
Query: 438 KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497
G RVL+FSQM+R++DILE Y D+++ R+DGST E+R + ++NAPDS F+FL
Sbjct: 467 AEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFL 526
Query: 498 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEV 557
L+TRAGGLG+NL +AD VI++DSDWNPQ D QA DRAHRIGQKK+V+VF V+ +IEE
Sbjct: 527 LTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEK 586
Query: 558 ILERAKQKMGIDAKVIQAGL-FNTTSTAQDRREMLKEIMRRGT-----SSLGT--DVPSE 609
+LERA QK+ +D VIQ G N+ + + ++ L +++ G +S GT D E
Sbjct: 587 VLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDLIGMIQHGAKEVFENSKGTMLDDDVE 646
Query: 610 REINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKG 669
+ R A ++ E F K+ + Q N+ S D EW + D ++ G
Sbjct: 647 EILKRGAEKTAELNNKFNKLGLDDIQ--NFTS----DASAYEW--NGQDFTKKGNNASLG 698
Query: 670 FGHESSSITGKRKRKEVVYA-DTL-SDLQWMKAVENGQDISKLSTRGKRREYLPSEGNES 727
+ S KR RKE+ Y+ D D+ AV + + + + K + + ++
Sbjct: 699 LNWINPS---KRVRKELTYSVDNYYKDVLKQPAVVKEKVVKQPVVKPKAPKSYNVQDHQF 755
Query: 728 ASNS--TGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEK 782
++ T E++ L K EI S S D FG + + F ++ E D+ EK
Sbjct: 756 FADELVTLLEREQLAFKKEI----SYQYSVDDFGDSDEE--FLEQDDED-DMTRDEK 805
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
Identities = 272/717 (37%), Positives = 418/717 (58%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
LL+ + + H +TE P+ ++ G+LR YQ++GL W++SL+ N L+GILADEMGL
Sbjct: 110 LLQDEEHQDDEDHQ-HTVMTESPSYIKEGKLREYQIQGLNWLISLYENRLSGILADEMGL 168
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKT+QTI+ + YL K + GP +++ PK+ L NW EF+ W P + VV G ++R +
Sbjct: 169 GKTLQTISFLGYLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRAS 228
Query: 205 M-REEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY 263
+ +++ ++ +F+VLIT +++I+R++ L+K +W Y++VDE HR+KN + +L+K I +
Sbjct: 229 IIKDQLYT--AKFDVLITSFEMILREKSALQKFRWEYIVVDEAHRIKNEDSSLSKIIRLF 286
Query: 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQL 323
+ RLL+TGTP+QN+L ELW+LLNFLLP +F + F+E F+ + Q
Sbjct: 287 YSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAFDNQNSEELDEEEKQRRQD 346
Query: 324 LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT--DVGRVGLD 381
+ LH ++ PF+LRR K +VEK L K + + M+ Q +Y+++ D+ V
Sbjct: 347 KAVSELHQLLSPFLLRRVKADVEKSLLPKIETNVYIGMTDMQVEWYKRLLEKDIDAVNGV 406
Query: 382 TGTGKSKS-LQNLSMQLRKCCNHPYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLR 437
G + K+ L N+ MQLRKCCNHPYLF G E ++ SGK +LD++L K +
Sbjct: 407 VGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNSGKMIILDKMLKKFK 466
Query: 438 KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497
G RVL+FSQM+R++DILE Y D+++ R+DGST E+R + ++NAPDS F+FL
Sbjct: 467 AEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFL 526
Query: 498 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEV 557
L+TRAGGLG+NL +AD VI++DSDWNPQ D QA DRAHRIGQKK+V+VF V+ +IEE
Sbjct: 527 LTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEK 586
Query: 558 ILERAKQKMGIDAKVIQAGL-FNTTSTAQDRREMLKEIMRRGT-----SSLGT--DVPSE 609
+LERA QK+ +D VIQ G N+ + + ++ L +++ G +S GT D E
Sbjct: 587 VLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDLIGMIQHGAKEVFENSKGTMLDDDVE 646
Query: 610 REINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKG 669
+ R A ++ E F K+ + Q N+ S D EW + D ++ G
Sbjct: 647 EILKRGAEKTAELNNKFNKLGLDDIQ--NFTS----DASAYEW--NGQDFTKKGNNASLG 698
Query: 670 FGHESSSITGKRKRKEVVYA-DTL-SDLQWMKAVENGQDISKLSTRGKRREYLPSEGNES 727
+ S KR RKE+ Y+ D D+ AV + + + + K + + ++
Sbjct: 699 LNWINPS---KRVRKELTYSVDNYYKDVLKQPAVVKEKVVKQPVVKPKAPKSYNVQDHQF 755
Query: 728 ASNS--TGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEK 782
++ T E++ L K EI S S D FG + + F ++ E D+ EK
Sbjct: 756 FADELVTLLEREQLAFKKEI----SYQYSVDDFGDSDEE--FLEQDDED-DMTRDEK 805
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
Identities = 255/637 (40%), Positives = 386/637 (60%)
Query: 87 EGQRQYNSAIHSIEEKVTEQ-PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLG 145
E + AI S + + ++ P ++ GE+R YQ+ GL W+ SL +N +NGILADEMGLG
Sbjct: 103 EDEEMVADAIKSDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHNKINGILADEMGLG 162
Query: 146 KTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDER-KA 204
KT+QTI++I Y+ K PH+++ PK+ L NW NEF W PSI AVV G R +
Sbjct: 163 KTLQTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQV 222
Query: 205 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
+R+ ++ F+V T Y+++++ + LKK+ W Y+I+DE HR+KN + L++T+
Sbjct: 223 LRDVILPQK--FDVCCTTYEMMLKVKTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRELN 280
Query: 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLL 324
+ RLL+TGTP+QN+L ELW+LLNFLLP IF S ++F+ WF+ D A++ L
Sbjct: 281 SENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFS---ND----AMSGNTDL- 332
Query: 325 IIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT 384
++RLH V++PF+LRR K +VEK L K +V + +S Q+ +Y +V + + + G
Sbjct: 333 -VQRLHKVLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKVL-MKDIDIINGA 390
Query: 385 GKSKS--LQNLSMQLRKCCNHPYLFVGEYN---MWRKEEIIRASGKFELLDRLLPKLRKS 439
GK + L N+ M LRKC NHPYLF G + ++ SGK +LD+LL K ++
Sbjct: 391 GKVEKARLMNILMHLRKCVNHPYLFDGAEPGPPFTTDQHLVDNSGKMVVLDKLLMKFKEQ 450
Query: 440 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 499
G RVL+FSQ +R++D+LE + +++ RLDGST E+R ++ +NAPDS F+F+L+
Sbjct: 451 GSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLT 510
Query: 500 TRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVIL 559
TRAGGLG+NL TAD VII+DSDWNPQ D QA DRAHRIGQKK+VRVF L++ +++E I+
Sbjct: 511 TRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERII 570
Query: 560 ERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSL--GTDVP-SEREINRLA 616
E+A+ K+ +D VIQ G + + +M+ I R G + D S+ +I+ +
Sbjct: 571 EKAEAKLRLDNIVIQQGRMSEAQKTLGKGDMISMI-RHGAEQVFAAKDSTISDDDIDTIL 629
Query: 617 ARSD-EEFWLFEKMDEERRQKENYRSRLMEDH-EVPEWAYSAPDNKEEQKGFEKGFGHES 674
+++ + L EKM + + N R+ ED+ + + + + K +Q G GH
Sbjct: 630 EKAEVKTAELNEKMG--KIDENNLRNMTFEDNAKFTVYQFEGENYKAKQAD---GMGHFW 684
Query: 675 SSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLS 711
KR+RK A+ DL + +A+ G K S
Sbjct: 685 IE-PPKRERK----ANYQVDLYYKEAMRAGNPTEKQS 716
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 1069 (381.4 bits), Expect = 8.2e-114, Sum P(3) = 8.2e-114
Identities = 229/522 (43%), Positives = 333/522 (63%)
Query: 102 KVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
K+ +QP+ + GGELR +QL G+ WM L++ N NGILADEMGLGKT+QT+A ++YL +
Sbjct: 362 KLEQQPSYITGGELRDFQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSL 421
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF---SERGRFN 217
GP ++V P + +P W + WA + + Y G R+ +R+ EF+ +++ +FN
Sbjct: 422 RQHGPFLVVVPLSTVPAWQETLALWASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKFN 481
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
+L+T Y+ +++DR L ++W YM +DE HRLKN E +L + +S ++ RLL+TGTP+Q
Sbjct: 482 LLLTTYEYVLKDRSVLSNIKWQYMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQ 541
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
N+++EL +L++FL+P F E AP DEEQ IR L ++P+I
Sbjct: 542 NNIRELAALVDFLMPGKFEIREEIN--LEAP----------DEEQEAYIRSLQEHLQPYI 589
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQV-TDVGRVGLDT-GTGKSKSLQNLSM 395
LRR K +VEK LP KS+ IL+ ++S Q +Y+ + T RV + +G SL N+ +
Sbjct: 590 LRRLKKDVEKSLPSKSERILRVELSDLQMYWYKNILTRNYRVLTQSISSGSQISLLNIVV 649
Query: 396 QLRKCCNHPYLFVGEYNMW--------RKEEIIRA----SGKFELLDRLLPKLRKSGHRV 443
+L+K NHPYLF G W R++E+++ SGK LLD+LL +LR+ GHRV
Sbjct: 650 ELKKASNHPYLFDGVEESWMQKINSQGRRDEVLKGLIMNSGKMVLLDKLLSRLRRDGHRV 709
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQM R++DIL YL L + RLDG+ R T + FNAP+SP F+FLLSTRAG
Sbjct: 710 LIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAG 769
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVIIFDSDWNPQ D QA RAHRIGQK V V+ L+S +IEE +LERA+
Sbjct: 770 GLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEEDVLERAR 829
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRR---EMLKEIMRRGTSSL 602
+KM ++ +I G+ + +++ + E L I++ G S++
Sbjct: 830 RKMILEYAIISLGVTDKQKNSKNDKFSAEELSAILKFGASNM 871
Score = 49 (22.3 bits), Expect = 8.2e-114, Sum P(3) = 8.2e-114
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 705 QDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLD--MKNEI 745
Q+I +LS+R R Y PS ES S S +E+K+ +K+E+
Sbjct: 954 QEI-ELSSRRGNRPY-PSSAVESPSYSGTSERKSKKQMLKDEV 994
Score = 39 (18.8 bits), Expect = 8.2e-114, Sum P(3) = 8.2e-114
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 762 PKRLRFERRNSESSDIQSVEKSE 784
PK+ RR S +++S +K E
Sbjct: 1221 PKKQTANRRQSGKPNVKSAQKIE 1243
Score = 39 (18.8 bits), Expect = 9.3e-113, Sum P(3) = 9.3e-113
Identities = 7/39 (17%), Positives = 21/39 (53%)
Query: 555 EEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKE 593
+E+ L + + +++ ++ TS + +++MLK+
Sbjct: 954 QEIELSSRRGNRPYPSSAVESPSYSGTSERKSKKQMLKD 992
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 1071 (382.1 bits), Expect = 3.5e-113, Sum P(3) = 3.5e-113
Identities = 230/534 (43%), Positives = 334/534 (62%)
Query: 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
EK+ +QP ++ GELR +QL GL WM L++ N NGILADEMGLGKT+QT+A +++L+
Sbjct: 348 EKLFKQPVFIKNGELRDFQLTGLNWMAFLWSRNENGILADEMGLGKTVQTVAFLSWLIYA 407
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE--RGRFN 217
+ GPH++V P + +P W F WAP + V Y G + RK +RE E +++ + +FN
Sbjct: 408 RRQNGPHLVVVPLSTVPAWQETFEKWAPDVNCVYYLGNGEARKTIREYELYNQNRKPKFN 467
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
VL+T Y+ I++D+ L +W ++ VDE HRLKN E +L + + G+++ RLL+TGTP+Q
Sbjct: 468 VLLTTYEYILKDKNELGAFKWQFLAVDEAHRLKNAESSLYEALKGFKVSNRLLITGTPLQ 527
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
N+++EL +L NFL+P F + + F D EQ I+ L I PFI
Sbjct: 528 NNVKELAALCNFLMPGKFTIDQEID--FET----------IDSEQEQYIKDLQKKISPFI 575
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQ 396
LRR K +VEK LP KS+ IL+ ++S Q YY+ + L+ G G SL N+ +
Sbjct: 576 LRRLKKDVEKSLPSKSERILRVELSDIQTEYYKNIITKNYAALNAGNRGSQISLLNIMSE 635
Query: 397 LRKCCNHPYLFVG-EYNMWRK----------EEIIRASGKFELLDRLLPKLRKSGHRVLL 445
L+K NHPYLF G E + K + I+ +SGK LL++LL +LRK GHRVL+
Sbjct: 636 LKKASNHPYLFDGAEDKVLDKAGSPSRENTLKGIVMSSGKMVLLEQLLSRLRKEGHRVLI 695
Query: 446 FSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL 505
FSQM R++DIL Y+ + ++F RLDG+ + +R + FNAP S F FLLSTRAGGL
Sbjct: 696 FSQMVRMLDILGDYMFIKGYQFQRLDGTVPSSKRKIAIDHFNAPGSKDFAFLLSTRAGGL 755
Query: 506 GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 565
G+NL TADTVIIFDSDWNPQ D QA RAHRIGQK V V+ VS ++EE ILERA++K
Sbjct: 756 GINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVSVYRFVSKDTVEEQILERARKK 815
Query: 566 MGIDAKVIQAGLFNTTSTAQDRREM----LKEIMRRGTSSLGTDVPSEREINRL 615
M ++ +I G+ + ++ + E L +I++ G ++ + +++++ L
Sbjct: 816 MVLEYAIISLGITDPSAKNGSKTEPSTNELSQILKFGAGTMFKENNNQQKLENL 869
Score = 43 (20.2 bits), Expect = 3.5e-113, Sum P(3) = 3.5e-113
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 734 AEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSES--SDIQSVEKSEHKGVQGS 791
A++K ++ + AS F + L +E + S S +Q V S HK +GS
Sbjct: 1284 AKQKRMNQQRSSAS-ASPALGHAKFKEEKRDLEYESMDEGSCKSIMQPVTSSLHKLHKGS 1342
Query: 792 -GLNGH 796
GL+ H
Sbjct: 1343 KGLDKH 1348
Score = 37 (18.1 bits), Expect = 3.5e-113, Sum P(3) = 3.5e-113
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 706 DISKLSTRGKRREYLPSEGNESA 728
++ + + KRR +P E N++A
Sbjct: 1051 ELERKAEEQKRRPPVPGEPNQTA 1073
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 1116 (397.9 bits), Expect = 4.1e-113, P = 4.1e-113
Identities = 233/533 (43%), Positives = 345/533 (64%)
Query: 109 LLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHV 168
LL GG+L++YQL+G++W++SL+ N LNGILAD+MGLGKTIQTI +++L N G+ GP++
Sbjct: 196 LLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGN-GLDGPYL 254
Query: 169 IVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSER-G-RFNVLITHYDLI 226
++AP + L NW NE + + PSI A++Y G ++R +R + + G +F ++IT Y++
Sbjct: 255 VIAPLSTLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVA 314
Query: 227 MRD-RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285
M D ++ L+ W Y+++DEGHRLKNH+C L + + ++ +LLLTGTP+QN+L ELWS
Sbjct: 315 MNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWS 374
Query: 286 LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQ--LLIIRRLHHVIRPFILRRKKD 343
LLNF+LP IF S + FE WF+ K++ + +EE+ ++ +LH ++RPFILRR K
Sbjct: 375 LLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMKC 434
Query: 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTD---VGRVGLDT--GTGKSKSLQNLSMQLR 398
+VE LP K ++I+ M+ QK + + + + +G + G G L NL +QLR
Sbjct: 435 DVELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWKGKLNNLVIQLR 494
Query: 399 KCCNHPYLFVGE----YNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMD 454
K CNHP L G+ Y EEI+ GKF LL+RLL +L + H+VL+FSQ T+L+D
Sbjct: 495 KNCNHPDLLQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQWTKLLD 554
Query: 455 ILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADT 514
I++ Y F+ R+DGS K +ER +K F+ S +FLLSTRAGGLG+NL ADT
Sbjct: 555 IMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTAADT 614
Query: 515 VIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQ 574
I++DSDWNPQMD QA DR HRIGQ K V V+ L + SIE +L+RA K+ ++ VI
Sbjct: 615 CILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKLEHVVIG 674
Query: 575 AGLFNT----TSTAQDRREMLKEIMRRGTSS---LGTDVPSEREINRLAARSD 620
G F+ +ST + ++L + T+ + TD+ S+ +++RL RSD
Sbjct: 675 QGQFHQERAKSSTPLEEEDILALLKEDETAEDKLIQTDI-SDADLDRLLDRSD 726
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 619 (223.0 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
Identities = 111/274 (40%), Positives = 176/274 (64%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
+QP GG +R YQ+EG++W+ L+ N +NGILADEMGLGKT+Q IA IA +++ +GV
Sbjct: 213 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQ-RGVP 271
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFN---VLIT 221
GP ++ P + LPNW+ EF + P I ++Y G +ER+ + + +G V+IT
Sbjct: 272 GPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVVIT 331
Query: 222 HYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQ 281
+++ MRDR L+ W Y+IVDEGHR+KN +C L + + + +LLLTGTP+QN+L
Sbjct: 332 SFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLS 391
Query: 282 ELWSLLNFLLPTIFNSVENFEEWFN-APFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340
ELWSLLNFLLP +F+ +++FE WF+ + + + E + ++ LH ++ PF+LRR
Sbjct: 392 ELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRR 451
Query: 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTD 374
K +V +P K +V++ +S Q+++Y + +
Sbjct: 452 LKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVN 485
Score = 511 (184.9 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
Identities = 124/277 (44%), Positives = 169/277 (61%)
Query: 390 LQNLSMQLRKCCNHPYLF---VGEYNMWRK--EEIIRASGKFELLDRLLPKLRKSGHRVL 444
LQN+ M LRKCCNHPYL + K EE++ SGKF +LDR+LP+L+K GH+VL
Sbjct: 560 LQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVL 619
Query: 445 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504
LFSQMT ++DIL Y L DF F RLDGS ER + FN D F+FL+STRAGG
Sbjct: 620 LFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNT-DPEVFIFLVSTRAGG 678
Query: 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564
LG+NL ADTVII+DSDWNPQ D QA+DR HRIGQ K V V+ LV+ +I++ I+ERA
Sbjct: 679 LGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAA 738
Query: 565 KMGIDAKVI--------QAGLFNTTSTAQDRREMLKEIMRRGTSS--LGT--DVPSEREI 612
K ++ +I Q+GL N + D +E+++ + R G+ V S++++
Sbjct: 739 KRKLEKLIIHKNHFKGGQSGL-NLSKNFLDPKELMELLKSRDYEREIKGSREKVISDKDL 797
Query: 613 NRLAARSDEEFWLFEKMDEERRQKENYRS-RLMEDHE 648
L RSD L ++M+ KE +++E+ E
Sbjct: 798 ELLLDRSD----LIDQMNASGPIKEKMGIFKILENSE 830
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 1071 (382.1 bits), Expect = 7.9e-112, Sum P(2) = 7.9e-112
Identities = 231/535 (43%), Positives = 338/535 (63%)
Query: 102 KVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
K+ +QP+ ++GGE+R +QL G+ WM L++ N NGILADEMGLGKT+QT+ ++YL+ +
Sbjct: 377 KLEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSL 436
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF----SERGRF 216
GP +IV P + +P W + W P + ++ Y G + R +RE EF+ S + +F
Sbjct: 437 KQHGPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESRANIREYEFYLSTNSRKLKF 496
Query: 217 NVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPI 276
N+L+T Y+ I++D+Q L ++W Y+ +DE HRLKN E +L +T+S ++ RLL+TGTP+
Sbjct: 497 NILLTTYEYILKDKQELNNIRWQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPL 556
Query: 277 QNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 336
QN+L+EL SL+NFL+P F + F+ P + EQ IR L ++PF
Sbjct: 557 QNNLKELASLVNFLMPGKFYIRDELN--FDQP----------NAEQERDIRDLQERLQPF 604
Query: 337 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSK-SLQNLS 394
ILRR K +VEK LP KS+ IL+ ++S Q +Y+ + L T G+ + SL N+
Sbjct: 605 ILRRLKKDVEKSLPSKSERILRVELSDMQTEWYKNILTKNYRALTGHTDGRGQLSLLNIV 664
Query: 395 MQLRKCCNHPYLFVGEYNMW---RK---EEIIRA----SGKFELLDRLLPKLRKSGHRVL 444
++L+K NHPYLF G W RK E+ +R SGK LLD+LL +L+ GHRVL
Sbjct: 665 VELKKVSNHPYLFPGAAEKWMMGRKMTREDTLRGIIMNSGKMVLLDKLLQRLKHDGHRVL 724
Query: 445 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504
+FSQM R+++IL Y+ L + + RLDG+ R + FNAPDSP F+FLLSTRAGG
Sbjct: 725 IFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGG 784
Query: 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564
LG+NL TADTVIIFDSDWNPQ D QA RAHRIGQK V V+ +S ++EE ILERA++
Sbjct: 785 LGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARR 844
Query: 565 KMGIDAKVIQAGLF----NTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRL 615
KM ++ +I G+ N+ + D +E L I++ G S++ +++++ +
Sbjct: 845 KMILEYAIISLGVTEKSKNSKNDKYDAQE-LSAILKFGASNMFKATENQKKLENM 898
Score = 53 (23.7 bits), Expect = 7.9e-112, Sum P(2) = 7.9e-112
Identities = 40/169 (23%), Positives = 66/169 (39%)
Query: 587 RREMLKEIMRRGTSS--LGTDVPSEREINRLA-ARS-------DEEFWLFEKMDEERRQK 636
R E L ++R + TD P++R+ NR A +S D +K +++K
Sbjct: 1190 RGEYLLSVVREHPDLFVVKTDQPTKRKYNRKAPTKSSTRQTTLDGSISNTKKSSRTKKKK 1249
Query: 637 ENYRSRLMEDHEVPEWAYSAPDNKEEQKGFE--KGFGHESSSITGKRKRKEVVYADTLSD 694
E +R D PE + +EE + E K +S KR T S
Sbjct: 1250 EEETNR--GDETSPEGTVGEDEVEEEPRQAEPPKRALRSNSGKAASNKRTTRNSMKTHSA 1307
Query: 695 LQWMKAVEN-GQDISKLSTRGKRRE--YLPSEGNESASNSTGAEKKNLD 740
+ + AV ++ +S + E ++ SE ES N E +L+
Sbjct: 1308 MDTLTAVAALDAELDNMSNEKAKEEVDHVKSENGESV-NEPNTEDLSLE 1355
Score = 43 (20.2 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 605 DVPSEREINRLAARSDEEFWLFEKM-DEERRQKENYRSRLMEDH 647
D+ E E+ R+ +E ++ +EER ++E EDH
Sbjct: 944 DIIPEEEMERI--EEEERMLAAQRAKEEERERREEEERENDEDH 985
Score = 42 (19.8 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 609 EREINRLAARSDEEFWLFEKMDEERRQKENYRSR 642
E E LAA+ +E + +EER E++ SR
Sbjct: 955 EEEERMLAAQRAKEEERERREEEERENDEDHPSR 988
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 1102 (393.0 bits), Expect = 9.7e-112, Sum P(2) = 9.7e-112
Identities = 284/716 (39%), Positives = 419/716 (58%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGL 144
++E QR A S+ K+ EQP L GG LR YQLEGL ++++ + N+ N ILADEMGL
Sbjct: 598 MVEQQRTKGKA--SLR-KLDEQPEWLIGGTLRDYQLEGLNFLVNSWLNDTNVILADEMGL 654
Query: 145 GKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204
GKT+Q+++++ +L + + GP ++V P + L NW EF W P + +VY G R+
Sbjct: 655 GKTVQSVSMLGFLQNTQQIPGPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASREV 714
Query: 205 MRE-EFFSER--GR---FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAK 258
++ EF++E+ GR FN L+T Y+++++D+ L K++WIY++VDE HRLKN E L
Sbjct: 715 CQQYEFYNEKKVGRPIKFNALLTTYEVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYT 774
Query: 259 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALT 318
+ + + +LL+TGTP+QNS++ELW+LL+FL P F + + F E N +K+ ++
Sbjct: 775 ALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVE--N--YKN---LSSF 827
Query: 319 DEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRV 378
+E +L LH +RP ILRR +VEK LP K + IL+ +MS QK YY+ + +
Sbjct: 828 NESELA---NLHLELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFH 884
Query: 379 GLDTGT-GKSKSLQNLSMQLRKCCNHPYLFV-------GEYNMWRK-EEIIRASGKFELL 429
L+ G G SL N+ ++L+KCCNHP+LF G+ N K ++II +SGK +L
Sbjct: 885 DLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKLDKIILSSGKLVIL 944
Query: 430 DRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAP 489
D+LL +LR++ HRVL+FSQM R++DIL YL L F+F RLDGSTK E R + FNAP
Sbjct: 945 DKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAP 1004
Query: 490 DSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLV 549
S F FLLSTRAGGLG+NL TADTV+IFDSDWNPQ D QA RAHRIGQ++ V ++ V
Sbjct: 1005 ASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFV 1064
Query: 550 SVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE 609
+ S+EE ILERAK+KM +D VIQ N A+ R E K ++G++ +
Sbjct: 1065 TSKSVEEEILERAKRKMVLDHLVIQK--LN----AEGRLE--KRETKKGSNF------DK 1110
Query: 610 REINRLAARSDEEFWLFEKMDEERRQK--ENYRSRLMEDHEVPEWAYSAPDNKEEQKGFE 667
E++ + EE + +K DEE +++ ++E E E ++ E F+
Sbjct: 1111 NELSAILRFGAEELFKEDKNDEESKKRLLSMDIDEILERAEQVEEKHTDETEHELLGAFK 1170
Query: 668 -KGF--GHESSSITGKR-KRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSE 723
F + S + K VV A+ + + ++ D S KR++ +
Sbjct: 1171 VANFCNAEDDGSFWSRWIKPDSVVTAEEALAPRAARNTKSYVDPSHPDRTSKRKK----K 1226
Query: 724 GNESASNSTGAEKKNLDMKNEIF----PLASEGTSED----TFGSAPKR--LRFER 769
G+E ++ ++K+ K E F PL EGTS ++G+ PKR RF R
Sbjct: 1227 GSEPPEHTERSQKRR---KTEYFVPSTPLL-EGTSAQVRGWSYGNLPKRDAQRFYR 1278
Score = 37 (18.1 bits), Expect = 9.7e-112, Sum P(2) = 9.7e-112
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 40 DGIEPLKDSEXXXXXXXASENGTPRD 65
+G +P KDS+ SE+ D
Sbjct: 112 EGSDPAKDSQSGYKEAYHSEDNHSND 137
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 1083 (386.3 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
Identities = 258/691 (37%), Positives = 393/691 (56%)
Query: 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
EK++ QP ++GGELR +QL G+ WM L++ NGILADEMGLGKT+QT+A I++L+
Sbjct: 362 EKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFA 421
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE---RGR- 215
+ GPH+IV P + +P W++ F WAP + + Y G R +RE EF++ +G+
Sbjct: 422 RRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKK 481
Query: 216 ---FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
FNVL+T Y+ I++DR L ++W +M VDE HRLKN E +L ++++ +++ R+L+T
Sbjct: 482 TMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLIT 541
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+++EL +L+NFL+P F + + F+++ DEEQ I LH
Sbjct: 542 GTPLQNNIKELAALVNFLMPGRFTIDQEID------FENQ------DEEQEEYIHDLHRR 589
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQ 391
I+PFILRR K +VEK LP K++ IL+ ++S Q YY+ + L G G SL
Sbjct: 590 IQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLL 649
Query: 392 NLSMQLRKCCNHPYLF----------VGEYNMWRKEEI---IRASGKFELLDRLLPKLRK 438
N+ +L+K NHPYLF G+ M R+ + I +SGK LLD+LL +L+K
Sbjct: 650 NIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKK 709
Query: 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 498
GHRVL+FSQM R++DIL YL + F RLDG+ + +R + FN+PDS F+FLL
Sbjct: 710 DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLL 769
Query: 499 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVI 558
STRAGGLG+NL TADTV+IFDSDWNPQ D QA RAHRIGQK V V+ LVS ++EE +
Sbjct: 770 STRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEV 829
Query: 559 LERAKQKMGIDAKVIQAGLFNT---TSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRL 615
LERA++KM ++ +I G+ + T + L I++ G ++ T +++++ L
Sbjct: 830 LERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDNQKKLEDL 889
Query: 616 ----AARSDEEFWLFEKMDEERRQKENYRSRL-MEDHEVP-EWAYSAPDNK------EEQ 663
E+ + E E + + + D++ +W P+ + EEQ
Sbjct: 890 NLDDVLNHAEDHVTTPDLGESHLGGEEFLKQFEVTDYKADIDWDDIIPEEELKKLQDEEQ 949
Query: 664 KGFEKGFGHESSSITGKRKRKEVVYADTLS-DLQWMKAVENGQDISKLSTRGKRREYLPS 722
K ++ + E + +R ++++ D + + S+ S R R + S
Sbjct: 950 KRKDEEYVKEQLEMMNRRDNALKKIKNSVNGDGTAANSDSDDDSTSRSSRRRARANDMDS 1009
Query: 723 EGNESASNSTGAEKKNLDMKNEIFPLASEGT 753
G A K ++K + L ++GT
Sbjct: 1010 IGESEVRALYKAILKFGNLKEILDELIADGT 1040
Score = 38 (18.4 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 769 RRNSESSDIQSVEKSEHKGVQGS 791
++++ SSD + KG+ GS
Sbjct: 1221 KKSASSSDTTPTPSKKGKGITGS 1243
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 673 (242.0 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
Identities = 129/285 (45%), Positives = 191/285 (67%)
Query: 104 TEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
T+QP + GG++R YQLEGL+W+ SL+ N L GILADEMGLGKT+Q I+LIA+ E+ V
Sbjct: 191 TQQPAPVTGGKMRKYQLEGLEWLKSLWMNGLCGILADEMGLGKTVQAISLIAFFKEHN-V 249
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGR----FNVL 219
+GP +I AP + + NW++EF+ W P I V+Y G DER +R++F + R + F V+
Sbjct: 250 SGPFLISAPLSTVSNWVDEFARWTPGIKTVLYHGTRDERAQLRKKFMNLRDQKSPDFPVV 309
Query: 220 ITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNS 279
T Y++ M DR++L + QW Y+IVDEGHRLKN C L K + Y RLL+TGTP+QN+
Sbjct: 310 CTSYEICMNDRKFLAQYQWRYIIVDEGHRLKNMNCRLIKELLSYNSANRLLITGTPLQNN 369
Query: 280 LQELWSLLNFLLPTIFNSVENFEEWFN--APFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
+ ELWSLL+FLLP IFN + +F+ WF+ + + GQ + + + ++ +H +++PF+
Sbjct: 370 ITELWSLLHFLLPEIFNDLNSFQNWFDFSSVLDNNGQTDMIERRKRTLVSTMHSILKPFL 429
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTD-VGRVGLD 381
LRR K +VE LP K + IL ++ QK Y+++ + GR L+
Sbjct: 430 LRRVKTDVESALPKKREYILYAPLTLEQKDLYREILNGTGRQYLE 474
Score = 448 (162.8 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
Identities = 110/258 (42%), Positives = 151/258 (58%)
Query: 388 KSLQNLSMQLRKCCNHPYLFVGEYNMWRK------EEIIRASGKFELLDRLLPKLRKSGH 441
K +QN MQ R CN P+ F Y W + E ++ ASGK LLDRL+P L GH
Sbjct: 587 KKMQNPVMQARLACNSPHNF---YWPWAEDPSSIDETLVTASGKMLLLDRLIPCLLNKGH 643
Query: 442 RVLLFSQMTRLMDILEIYLK-LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 500
++L+FSQ +DIL+ + L + R+DG+ +R +K FN D Y +FLLST
Sbjct: 644 KILIFSQFKTQLDILQDWATHLRSWNCCRIDGAISQADRQAQIKAFNT-DKDYKIFLLST 702
Query: 501 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILE 560
RAGG G+NL ADTVI+FDSDWNPQ D QA+DRAHRIGQ K V V+ L + G++E+ +LE
Sbjct: 703 RAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRIGQTKPVIVYRLATKGTVEQTLLE 762
Query: 561 RAKQKMGIDAKVIQAGLFNTT---ST-AQDRREMLK------EIMRRGTSSLGTDVPSER 610
+A K ++ VIQ G F + ST ++D + LK E R S+ + S+
Sbjct: 763 KADSKRRLERLVIQKGKFKSLLSESTMSRDDVDELKRALGEDEFERFEASADPASILSDE 822
Query: 611 EINRLAARSDEEFWLFEK 628
++ L RS+E + L EK
Sbjct: 823 DLRVLTDRSEEAYALAEK 840
Score = 47 (21.6 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 612 INRLAARSDEEFWLFEKMDEERR------QKENYRSRLME 645
+ RLA + E L EK D +RR QK ++S L E
Sbjct: 747 VYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFKSLLSE 786
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 616 (221.9 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
Identities = 113/274 (41%), Positives = 176/274 (64%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
+QP + GG +R YQ+EG++W+ L+ N +NGILADEMGLGKTIQ IA IA ++E +GV
Sbjct: 212 QQPKIFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTIQCIATIALMVE-RGVP 270
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFN---VLIT 221
GP ++ P + LPNW++EF + P I ++Y G ER+ + + +G V+IT
Sbjct: 271 GPFLVCGPLSTLPNWMSEFKRFTPEIPLMLYHGAQQERRKLVRKIHGRQGSLKIHPVVIT 330
Query: 222 HYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQ 281
+++ MRDR L+ W Y+IVDEGHR+KN C L + + + +LLLTGTP+QN+L
Sbjct: 331 SFEIAMRDRNALQSCFWKYLIVDEGHRIKNMNCRLIRELKRFNADNKLLLTGTPLQNNLA 390
Query: 282 ELWSLLNFLLPTIFNSVENFEEWFN-APFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340
ELWSLLNFLLP +F+ +++FE WF+ + + + E++ I+ LH ++ PF+LRR
Sbjct: 391 ELWSLLNFLLPDVFDDLKSFESWFDITSITETAEDIIAKEKEQNILHMLHQILTPFLLRR 450
Query: 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTD 374
K +V +P K +V++ ++ Q+ +Y + +
Sbjct: 451 LKSDVALEVPPKREVVVYAPLAKKQETFYTAIVN 484
Score = 505 (182.8 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
Identities = 118/249 (47%), Positives = 158/249 (63%)
Query: 390 LQNLSMQLRKCCNHPYLFVGEYNM------WR-KEEIIRASGKFELLDRLLPKLRKSGHR 442
LQN+ M LRKCCNHPYL EY + ++ E++++ SGKF LLDR+LP+L+K GH+
Sbjct: 560 LQNIMMLLRKCCNHPYLI--EYPLDPATQQFKVDEDLVKNSGKFLLLDRMLPELKKRGHK 617
Query: 443 VLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502
VL+FSQMT ++DIL Y L FKF RLDGS +R + QFN D F+FL+STRA
Sbjct: 618 VLMFSQMTMMLDILMDYCYLRGFKFSRLDGSMSYSDREENMHQFNN-DPEVFLFLVSTRA 676
Query: 503 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 562
GGLG+NL ADTVII+DSDWNPQ D QA+DR HRIGQ K V V+ LV+ +I++ I+ERA
Sbjct: 677 GGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERA 736
Query: 563 KQKMGIDAKVI--------QAGLFNTTSTA--QDRREMLKEI-MRRGTSSLGTDVPSERE 611
K ++ +I ++GL + S Q+ E+LK R V S+++
Sbjct: 737 AAKRKLEKLIIHKNQFKGGKSGLAQSKSCLDPQELIELLKSRDYEREVKGSKEKVISDKD 796
Query: 612 INRLAARSD 620
+ L RSD
Sbjct: 797 LELLLDRSD 805
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 615 (221.5 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
Identities = 111/274 (40%), Positives = 175/274 (63%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
+QP GG +R YQ+EG++W+ L+ N +NGILADEMGLGKT+Q IA IA +++ +GV
Sbjct: 214 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQ-RGVP 272
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFN---VLIT 221
GP ++ P + LPNW+ EF + P I ++Y G ER+ + + +G V+IT
Sbjct: 273 GPFLVCGPLSTLPNWMAEFQRFTPDIPTMLYHGTQQERRKLVKNIHKRKGTLQIHPVVIT 332
Query: 222 HYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQ 281
+++ MRDR L+ W Y+IVDEGHR+KN +C L + + + +LLLTGTP+QN+L
Sbjct: 333 SFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLS 392
Query: 282 ELWSLLNFLLPTIFNSVENFEEWFN-APFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340
ELWSLLNFLLP +F+ +++FE WF+ + + + E + ++ LH ++ PF+LRR
Sbjct: 393 ELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRR 452
Query: 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTD 374
K +V +P K +V++ +S Q+++Y + +
Sbjct: 453 LKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVN 486
Score = 503 (182.1 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
Identities = 122/278 (43%), Positives = 168/278 (60%)
Query: 390 LQNLSMQLRKCCNHPYLF---VGEYNMWRK--EEIIRASGKFELLDRLLPKLRKSGHRVL 444
LQN+ M LRKCCNHPYL + K EE++ SGKF +LDR+LP+L+ GH+VL
Sbjct: 561 LQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKARGHKVL 620
Query: 445 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504
LFSQMTR++DIL Y +F F RLDGS ER + FN D F+FL+STRAGG
Sbjct: 621 LFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNT-DPDVFIFLVSTRAGG 679
Query: 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564
LG+NL ADTVII+DSDWNPQ D QA+DR HRIGQ K V V+ LV+ +I++ I+ERA
Sbjct: 680 LGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAA 739
Query: 565 KMGIDAKVI--------QAGLFNTTSTAQDRREMLKEIMR-----RGTSSLGTDVPSERE 611
K ++ +I Q+GL N + D +E++ E+++ R V S+++
Sbjct: 740 KRKLEKLIIHKNHFKGGQSGL-NQSKNFLDPKELM-ELLKSRDYEREVKGSREKVISDKD 797
Query: 612 INRLAARSDEEFWLFEKMDEERRQKENYRS-RLMEDHE 648
+ L RSD L ++M+ KE +++E+ E
Sbjct: 798 LELLLDRSD----LIDQMNASGPIKEKMGIFKILENSE 831
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 703 (252.5 bits), Expect = 4.5e-111, Sum P(3) = 4.5e-111
Identities = 144/304 (47%), Positives = 192/304 (63%)
Query: 104 TEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
T+ P LL+ LR YQ GL W++SL+ NLNGILADEMGLGKTI TI+LIAYL KGV
Sbjct: 771 TKVPFLLKF-PLREYQHIGLDWLVSLYEKNLNGILADEMGLGKTIMTISLIAYLAVQKGV 829
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+IV P +VL NW EF W P + Y G +RKA R+ + S+ F+V IT Y
Sbjct: 830 WGPHLIVVPSSVLFNWEMEFKRWCPGLKIFTYHGTSRDRKANRKGW-SKSNAFHVCITSY 888
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++M D ++ +W+YMI+DE H +KN + + + + +RRLLLTGTP+QN+L EL
Sbjct: 889 SMVMSDHLIFRRKKWVYMILDEAHVIKNFKTQRWQNMLHFNTERRLLLTGTPLQNNLMEL 948
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343
WSL++FL+P IF S F++WF+ P G + D+ II RLH V+RPF+LRR K
Sbjct: 949 WSLMHFLMPDIFQSHREFQDWFSNPVT--GMIEGGDDVNEDIINRLHAVLRPFLLRRLKK 1006
Query: 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 403
+VEK +P K I+ C MS QK Y++ + +G S+ N+ MQLRK CNH
Sbjct: 1007 DVEKQMPPKHTHIVPCSMSRRQKFLYEEFINSSSTQSTLSSGSFFSIINILMQLRKVCNH 1066
Query: 404 PYLF 407
P LF
Sbjct: 1067 PDLF 1070
Score = 430 (156.4 bits), Expect = 4.5e-111, Sum P(3) = 4.5e-111
Identities = 82/157 (52%), Positives = 116/157 (73%)
Query: 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 483
GK + L LL +L++ GHR L+F+QMT+++DI E +L L+ + +LRLDGSTK ++R L
Sbjct: 1379 GKLQQLAILLRRLKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKRQVLT 1438
Query: 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543
++FN D F+F+LSTR+GGLGLNL ADTVI +D+DWNP MD QA+DR HRIGQ +EV
Sbjct: 1439 ERFNT-DPKIFLFILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTREV 1497
Query: 544 RVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNT 580
++ ++ +IEE IL+++ QK +D VI+AG F T
Sbjct: 1498 NIYRFITQHTIEENILKKSNQKRQLDKMVIKAGEFTT 1534
Score = 49 (22.3 bits), Expect = 4.5e-111, Sum P(3) = 4.5e-111
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKG---FEKGFGHESSSITGKRKR 683
E + E ++KEN E+ E K+E++ EK G+E + K
Sbjct: 1736 ENLKENEKEKENENENENENENEKEKDNEKEREKQEKENEIEIEKEKGNEKENEKENEKE 1795
Query: 684 KE 685
KE
Sbjct: 1796 KE 1797
Score = 46 (21.3 bits), Expect = 9.3e-111, Sum P(3) = 9.3e-111
Identities = 24/167 (14%), Positives = 66/167 (39%)
Query: 579 NTTSTAQDRREMLKEIMRRGTSSLGT-DVPSEREINRLAARSDEEFWLFEKMDEERRQKE 637
NT +D +++ + T S+ + + S + + + ++ ++ ++++Q++
Sbjct: 1630 NTQDLVEDYLNPIQKFALKLTESISSFTLESYGTVTKQQLKQQQQQQQ-QQQQQQQQQQQ 1688
Query: 638 NYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQW 697
+ + + + + +++Q+ ++ + + K KE + + + +
Sbjct: 1689 QQQQQQQQQQQQQQQKQKQQQQQQQQQQQQQQQQQQPKILKLDEKDKENL-KENEKEKEN 1747
Query: 698 MKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNE 744
EN + K K RE E G EK+N + +NE
Sbjct: 1748 ENENENENENEKEKDNEKEREKQEKENEIEIEKEKGNEKEN-EKENE 1793
Score = 44 (20.5 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 522 WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQ 574
W+ Q D+ D G+ ++ F++ + + R+K ++ KVIQ
Sbjct: 2359 WSQQEDKLILDNVKNFGENWDLITFIIQNSNYSRINRVTRSKSQISERYKVIQ 2411
Score = 43 (20.2 bits), Expect = 3.6e-69, Sum P(3) = 3.6e-69
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 513 DTVIIFDSDWNPQ--MDQQAED 532
D +I+ D+D+N + D +A+D
Sbjct: 1936 DNIIVNDNDYNEEDGADDEADD 1957
Score = 41 (19.5 bits), Expect = 3.1e-110, Sum P(3) = 3.1e-110
Identities = 18/88 (20%), Positives = 34/88 (38%)
Query: 698 MKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGA-EKKNLDMKNEIFPLASEGTSED 756
+K E ++ K + + K E NE+ E++ + +NEI +G ++
Sbjct: 1728 LKLDEKDKENLKENEKEKENENENENENENEKEKDNEKEREKQEKENEIEIEKEKGNEKE 1787
Query: 757 TFGSAPKRLRFERRNSESSDIQSVEKSE 784
K ER + D Q +K +
Sbjct: 1788 NEKENEKEKENERDKDKDKD-QDQDKDQ 1814
Score = 40 (19.1 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 91 QYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNN 133
QYN ++++ +Q LQ +L+ Q + Q+ +NNN
Sbjct: 1154 QYNQ--QQQQQQLQQQQQQLQQQQLQQQQFQQ-QFQQQNYNNN 1193
Score = 39 (18.8 bits), Expect = 5.1e-110, Sum P(3) = 5.1e-110
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 690 DTLSDLQWMKAVENGQDIS 708
D ++ +W AVE +D S
Sbjct: 1553 DNVTQQEWENAVEQAEDES 1571
Score = 37 (18.1 bits), Expect = 8.2e-110, Sum P(3) = 8.2e-110
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 587 RREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFE-KMDEERRQKE 637
R ++ K++ ++ S E+E L E+ + + K +EERR KE
Sbjct: 2086 RGKIQKQVAQQYVYSKQHTKEKEKERKLLMKMKKEKDKIEKAKQEEERRAKE 2137
Score = 37 (18.1 bits), Expect = 9.9e-68, Sum P(2) = 9.9e-68
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 758 FGSAPKRLRFERRNSESSDIQSVEKS 783
+G++P +L E RN E I + KS
Sbjct: 1328 YGASPSKLLEEHRN-EVLLINGLSKS 1352
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 616 (221.9 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 112/274 (40%), Positives = 174/274 (63%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
+QP GG +R YQ+EG++W+ L+ N +NGILADEMGLGKT+Q IA IA +++ +GV
Sbjct: 213 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQ-RGVP 271
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFN---VLIT 221
GP ++ P + LPNW+ EF + P I ++Y G ER+ + +G V+IT
Sbjct: 272 GPFLVCGPLSTLPNWMAEFQRFTPEIPTMLYHGSQQERRKLVNHIHKRKGTLQIHPVVIT 331
Query: 222 HYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQ 281
+++ MRDR L+ W Y+IVDEGHR+KN +C L + + + +LLLTGTP+QN+L
Sbjct: 332 SFEIAMRDRNVLQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLS 391
Query: 282 ELWSLLNFLLPTIFNSVENFEEWFN-APFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340
ELWSLLNFLLP +F+ +++FE WF+ + + + E + ++ LH ++ PF+LRR
Sbjct: 392 ELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRR 451
Query: 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTD 374
K +V +P K +V++ +S Q+V+Y + +
Sbjct: 452 LKSDVALEVPPKREVVVYAPLSKKQEVFYTAIVN 485
Score = 500 (181.1 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 122/278 (43%), Positives = 168/278 (60%)
Query: 390 LQNLSMQLRKCCNHPYLF---VGEYNMWRK--EEIIRASGKFELLDRLLPKLRKSGHRVL 444
LQN+ M LRKCCNHPYL + K EE++ SGKF +LDR+LP+L+ GH+VL
Sbjct: 560 LQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKIRGHKVL 619
Query: 445 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504
LFSQMTR++DIL Y +F F RLDGS ER + FN D F+FL+STRAGG
Sbjct: 620 LFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNT-DPDVFIFLVSTRAGG 678
Query: 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564
LG+NL ADTVII+DSDWNPQ D QA+DR HRIGQ K V V+ LV+ +I++ I+ERA
Sbjct: 679 LGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAA 738
Query: 565 KMGIDAKVI--------QAGLFNTTSTAQDRREMLKEIMR-----RGTSSLGTDVPSERE 611
K ++ +I Q+GL N + D +E++ E+++ R V S+++
Sbjct: 739 KRKLEKLIIHKNHFKGGQSGL-NQSKNFLDPKELM-ELLKSRDYEREVKGSREKVISDKD 796
Query: 612 INRLAARSDEEFWLFEKMDEERRQKENYRS-RLMEDHE 648
+ L RSD L ++M+ KE +++E+ E
Sbjct: 797 LELLLDRSD----LIDQMNASGPIKEKMGIFKILENSE 830
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 615 (221.5 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 111/274 (40%), Positives = 175/274 (63%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
+QP GG +R YQ+EG++W+ L+ N +NGILADEMGLGKT+Q IA IA +++ +GV
Sbjct: 191 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQ-RGVP 249
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFN---VLIT 221
GP ++ P + LPNW+ EF + P I ++Y G ER+ + + +G V+IT
Sbjct: 250 GPFLVCGPLSTLPNWMAEFKRFTPEIPTMLYHGTQQERRILVKHIHERKGTLQIHPVVIT 309
Query: 222 HYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQ 281
+++ MRDR L+ W Y+IVDEGHR+KN +C L + + + +LLLTGTP+QN+L
Sbjct: 310 SFEIAMRDRTTLQNCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLS 369
Query: 282 ELWSLLNFLLPTIFNSVENFEEWFN-APFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340
ELWSLLNFLLP +F+ +++FE WF+ + + + E + ++ LH ++ PF+LRR
Sbjct: 370 ELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRR 429
Query: 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTD 374
K +V +P K +V++ +S Q+++Y + +
Sbjct: 430 LKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVN 463
Score = 501 (181.4 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 121/278 (43%), Positives = 168/278 (60%)
Query: 390 LQNLSMQLRKCCNHPYLF---VGEYNMWRK--EEIIRASGKFELLDRLLPKLRKSGHRVL 444
LQN+ M LRKCCNHPYL + K EE++ SGKF +LDR+LP+L+ GH+VL
Sbjct: 538 LQNIMMLLRKCCNHPYLIEYPIDPVTQEFKVDEELVTNSGKFLILDRMLPELKTRGHKVL 597
Query: 445 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504
LFSQMTR++DIL Y +F F RLDGS ER + FN D F+FL+STRAGG
Sbjct: 598 LFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFNT-DPDVFIFLVSTRAGG 656
Query: 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564
LG+NL ADTVII+DSDWNPQ D QA+DR HRIGQ + V V+ LV+ +I++ I+ERA
Sbjct: 657 LGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRLVTANTIDQKIVERAAA 716
Query: 565 KMGIDAKVI--------QAGLFNTTSTAQDRREMLKEIMR-----RGTSSLGTDVPSERE 611
K ++ +I Q+GL N + D +E++ E+++ R V S+++
Sbjct: 717 KRKLEKLIIHKNHFKGGQSGL-NQSKNFLDPKELM-ELLKSRDYEREVKGSREKVISDKD 774
Query: 612 INRLAARSDEEFWLFEKMDEERRQKENYRS-RLMEDHE 648
+ L RSD L ++M+ KE +++E+ E
Sbjct: 775 LELLLDRSD----LLDQMNASGPVKEKMGIFKILENSE 808
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 672 (241.6 bits), Expect = 1.2e-110, Sum P(3) = 1.2e-110
Identities = 134/304 (44%), Positives = 191/304 (62%)
Query: 104 TEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
T P LL+G +LR YQ GL W+++++ LNGILADEMGLGKTIQTI+L+A+L KG
Sbjct: 618 TPIPLLLRG-QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGN 676
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+I+ P +V+ NW E W PS + Y G ERK R+ + ++ F+V IT Y
Sbjct: 677 WGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW-TKPNAFHVCITSY 735
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
L+++D Q ++ W Y+I+DE +KN + +++ + QRRLLLTGTP+QNSL EL
Sbjct: 736 KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMEL 795
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343
WSL++FL+P +F S F+EWF+ P G + + E +++RLH V+RPF+LRR K
Sbjct: 796 WSLMHFLMPHVFQSHREFKEWFSNPLT--GMIEGSQEYNEGLVKRLHKVLRPFLLRRVKV 853
Query: 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 403
+VEK +P K + +++C +S Q+ Y TG S+ N+ MQLRK CNH
Sbjct: 854 DVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVINILMQLRKVCNH 913
Query: 404 PYLF 407
P LF
Sbjct: 914 PNLF 917
Score = 457 (165.9 bits), Expect = 1.2e-110, Sum P(3) = 1.2e-110
Identities = 120/333 (36%), Positives = 182/333 (54%)
Query: 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTL 482
+GK + L LL +L+ GHRVL+F+QMTR++D+LE +L + +LRLDGST+ E+R L
Sbjct: 2030 AGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 2089
Query: 483 LKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 542
+++FNA D F F+LSTR+GG+G+NL ADTV+ +DSDWNP MD QA+DR HRIGQ ++
Sbjct: 2090 MERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 2148
Query: 543 VRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDR-REMLKEIMRRGTSS 601
V ++ L+S ++EE IL++A QK + I+ G F T Q RE+ + S
Sbjct: 2149 VHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEEPPGS 2208
Query: 602 LGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKE 661
+ VP E E +A++ + E+ +E+ R+ E + A A N+
Sbjct: 2209 SVSSVPEEEE-ETVASKQTH---ILEQALCRAEDEEDIRAATQAKAE--QVAELAEFNEN 2262
Query: 662 EQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRR--EY 719
E GF G G E+S + +E+ A+ + VE I + + + E
Sbjct: 2263 E--GFPAGEGEEASRPGPGAEDEEMSRAEQ----EIAALVEQLTPIERYAMKFLEASLEE 2316
Query: 720 LPSEGNESASNSTGAEKKNLDM-KNEIFPLASE 751
+ E + A A +K+LD K E+F L E
Sbjct: 2317 VSREELKQAEEQVEAARKDLDQAKEEVFRLPQE 2349
Score = 51 (23.0 bits), Expect = 7.9e-70, Sum P(4) = 7.9e-70
Identities = 23/93 (24%), Positives = 35/93 (37%)
Query: 593 EIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMED-HEVPE 651
E M R + V I R A + E L E EE +Q E +D + E
Sbjct: 2283 EEMSRAEQEIAALVEQLTPIERYAMKFLEAS-LEEVSREELKQAEEQVEAARKDLDQAKE 2341
Query: 652 WAYSAPDNKEEQKGFEKGFGHESSSITGKRKRK 684
+ P +EE G +S ++ +R +K
Sbjct: 2342 EVFRLPQEEEEGPGAGDEMSCATSGVSHRRSKK 2374
Score = 50 (22.7 bits), Expect = 1.2e-110, Sum P(3) = 1.2e-110
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 750 SEGTSEDTFGSAP----KRLRFER-----RNSESSDIQSVEKSEHKGVQGSGLNGHILT 799
SEG+S D GS P RLR E R SE S + +V + + + SG +G LT
Sbjct: 3003 SEGSSSDEDGSRPLTRLARLRLEAEGMRGRKSEGSMVMAVIQDD-LDLADSGPSGLELT 3060
Score = 43 (20.2 bits), Expect = 7.9e-70, Sum P(4) = 7.9e-70
Identities = 17/85 (20%), Positives = 34/85 (40%)
Query: 464 DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWN 523
D + ++ D + K + LL+Q A +F TR + T + D +
Sbjct: 2021 DLRLIQYDCAGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGS 2080
Query: 524 PQMDQQAEDRAHRIGQKKEVRVFVL 548
+++Q+ + R K + F+L
Sbjct: 2081 TRVEQR-QALMERFNADKRIFCFIL 2104
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 618 (222.6 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 116/275 (42%), Positives = 179/275 (65%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
+QP L GG +R YQ+EG++W+ L+ N +NGILADEMGLGKTIQ IA IA ++E K V
Sbjct: 223 QQPQLFTGGVMRWYQVEGIEWLRMLWENGINGILADEMGLGKTIQCIAHIAMMVEKK-VL 281
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFN---VLIT 221
GP ++VAP + LPNWI+EF + P ++ ++Y G ER + ++ +G V++T
Sbjct: 282 GPFLVVAPLSTLPNWISEFKRFTPEVSVLLYHGPQKERLDLVKKIRQHQGSLRMCPVVVT 341
Query: 222 HYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQ 281
+++ MRDR++L++ W Y+IVDEGHR+KN C L + + +LLLTGTP+QN+L
Sbjct: 342 SFEIAMRDRKFLQRFHWNYLIVDEGHRIKNLNCRLVQELKMLPTDNKLLLTGTPLQNNLS 401
Query: 282 ELWSLLNFLLPTIFNSVENFEEWFNAPF--KDRGQVALTDEEQLLIIRRLHHVIRPFILR 339
ELWSLLNFLLP +F+ +++FE WF+ D + + EQ I+ LH ++ PF+LR
Sbjct: 402 ELWSLLNFLLPDVFDDLKSFESWFDISTITSDAENIVANEREQN-ILHMLHLILTPFLLR 460
Query: 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTD 374
R K +V +P K ++++ ++ Q+ +Y + +
Sbjct: 461 RLKSDVTLEVPPKKEIVVYAPLTNKQEAFYMAIVN 495
Score = 494 (179.0 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 104/213 (48%), Positives = 141/213 (66%)
Query: 373 TDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLF-------VGEYNMWRKEEIIRASGK 425
T V V + + LQN+ M L++CCNH YL G++ + E+++ ASGK
Sbjct: 559 TPVVNVFMPVDAQVNLKLQNILMLLKRCCNHAYLIEYPLDPTTGDFKI--DEQLVEASGK 616
Query: 426 FELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQ 485
F +LDR+LP+L+K GH+VL+FSQMT ++DIL Y L +++ RLDGS +R +K+
Sbjct: 617 FLILDRMLPELKKRGHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKK 676
Query: 486 FNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRV 545
F++ D F+FLLSTRAGGLG+NL +ADTVIIFDSDWNPQ D QA+DR HRIGQ K V V
Sbjct: 677 FSS-DPEVFLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQAQDRCHRIGQTKPVVV 735
Query: 546 FVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 578
L++ +I+E ILERA K ++ VI F
Sbjct: 736 HRLITANTIDEKILERASAKRKLEKMVIHKNKF 768
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 1081 (385.6 bits), Expect = 4.1e-110, Sum P(2) = 4.1e-110
Identities = 264/662 (39%), Positives = 388/662 (58%)
Query: 105 EQPTLL--QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
+QP+ + + ELR YQL+G+ W+ + + ILADEMGLGKTIQTI+ ++YL
Sbjct: 477 KQPSYIGDENLELRDYQLDGVNWLAHSWCRCNSVILADEMGLGKTIQTISFLSYLFHQHQ 536
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFS---ERGRFNV 218
+ GP ++V P + L +W EF TWAP + VVY G RK +R+ E+ + +R +FN
Sbjct: 537 LYGPFIVVVPLSTLTSWQREFDTWAPDMNVVVYLGDVTSRKTIRDYEWINPQTKRIKFNA 596
Query: 219 LITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 278
L+T Y+++++D+ L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+QN
Sbjct: 597 LLTTYEILLKDKGVLGNINWAFLGVDEAHRLKNDDSLLYKTLIDFRSNHRLLITGTPLQN 656
Query: 279 SLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338
SL+ELWSLL+FL+ F S E+FE+ + +D G + LH V+ PF+L
Sbjct: 657 SLKELWSLLHFLMSDKFESWEDFEDE-HGKGRDNGY------------QSLHKVLEPFLL 703
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQL 397
RR K +VEK LP K + IL+ DMSA QK +Y+ + L GT G S N+ M+L
Sbjct: 704 RRVKKDVEKSLPAKVEQILRVDMSAQQKQFYKWILTRNFKALSKGTRGSSSGFLNIVMEL 763
Query: 398 RKCCNHPYLFV----GEYNMWRK--EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTR 451
+KCCNH +L GE + ++ + ++R GK LLD+LL +L+ G+RVL+FSQM R
Sbjct: 764 KKCCNHAFLIKQPEDGENDAPQEHLQSLVRGGGKLVLLDKLLTRLKDRGNRVLIFSQMVR 823
Query: 452 LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 511
++DIL YL + ++F RLDGS K E R L FNA S F FLLSTRAGGLG+NL +
Sbjct: 824 MLDILADYLSMKRYQFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLAS 883
Query: 512 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 571
ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ G++EE I+ERAK+KM +D
Sbjct: 884 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEDIIERAKKKMVLDHL 943
Query: 572 VIQ----AG---LFNTTSTAQDR---REMLKEIMRRGTSSLGTDVPSEREINRLAARSDE 621
VIQ G L N+++ + +E L I++ G L + E E DE
Sbjct: 944 VIQRMDTTGRTVLDNSSANSNSNPFNKEELSAILKFGAEDLFKEAEGE-ESEPQEMDIDE 1002
Query: 622 EFWLFEKMDEERRQKENYRSRLMEDHEVPEWAY--SAPDNKEEQ-KGFEKGFGHESS-SI 677
L E + + Q + L+ +V + S PD E+ + +++ E +
Sbjct: 1003 ILRLAETRESD--QGSSATDELLSQFKVANFTMDESTPDLDEKPGRDWDEIIPEEQRRKV 1060
Query: 678 TGKRKRKEV--VYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAE 735
++K+KE+ +Y S KA N D S + ++ K R S G++S ++ + +
Sbjct: 1061 EEEQKQKEMEDIYMLPRSRSSNKKAQANDSD-SDVGSKLKHR----SSGSDSETDDSEDD 1115
Query: 736 KK 737
K+
Sbjct: 1116 KR 1117
Score = 46 (21.3 bits), Expect = 4.1e-110, Sum P(2) = 4.1e-110
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 707 ISKLSTRGKR---REYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAP 762
+SK + G + R Y ++ S +KK+ +K + F G+S D+ G+ P
Sbjct: 1529 VSKFTEFGAQKLHRLYKKAQKKRSQEGEKEHKKKDDPIKKKPFRPEPSGSSRDSTGAQP 1587
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
Identities = 272/662 (41%), Positives = 379/662 (57%)
Query: 105 EQPTLLQGG--ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
+QPT L G ELR YQLEGL W+ + + + ILADEMGLGKTIQTI+ ++YL
Sbjct: 472 KQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 531
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF---SERGRFNV 218
+ GP +IV P + L +W EF WAP I VVY G R +RE E+ ++R +FN
Sbjct: 532 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 591
Query: 219 LITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 278
LIT Y+++++D+ L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+QN
Sbjct: 592 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQN 651
Query: 279 SLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338
SL+ELWSLL+F++P F E+FEE D G+ + L H V+ PF+L
Sbjct: 652 SLKELWSLLHFIMPEKFEFWEDFEE-------DHGKGRENGYQSL------HKVLEPFLL 698
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQL 397
RR K +VEK LP K + IL+ +MSA QK YY+ + L GT G + N+ M+L
Sbjct: 699 RRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMEL 758
Query: 398 RKCCNHPYLFVGEYNMWRK--EEI----IRASGKFELLDRLLPKLRKSGHRVLLFSQMTR 451
+KCCNH YL R+ +E+ IR+SGK LLD+LL +LR+ G+RVL+FSQM R
Sbjct: 759 KKCCNHCYLIKPPEENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVR 818
Query: 452 LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 511
++DIL YL + + F RLDGS K E R L FNA S F FLLSTRAGGLG+NL +
Sbjct: 819 MLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLAS 878
Query: 512 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 571
ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ G++EE I+ERAK+KM +D
Sbjct: 879 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHL 938
Query: 572 VIQ----AG---LFNTTSTAQDR---REMLKEIMRRGTSSLGTDVPSEREINRLAARSDE 621
VIQ G L N + + +E L I++ G L ++ E E DE
Sbjct: 939 VIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGE-ESEPQEMDIDE 997
Query: 622 EFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQ---KGFEKGFGHES-SSI 677
L E + E + L+ +V +A + + E+ K +++ E +
Sbjct: 998 ILRLAETRENE--VSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKV 1055
Query: 678 TGKRKRKEV--VYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAE 735
+ ++KE+ +Y KA N D S R +R S +ES ++ + +
Sbjct: 1056 EEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQR----SSASESETDDSDDD 1111
Query: 736 KK 737
KK
Sbjct: 1112 KK 1113
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 653 (234.9 bits), Expect = 5.5e-110, Sum P(3) = 5.5e-110
Identities = 132/330 (40%), Positives = 208/330 (63%)
Query: 93 NSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIA 152
N +I + E+ QPT+ G +L+ YQL+G+ W+ +L+ +NGILADEMGLGKT+Q+IA
Sbjct: 500 NPSIQAGED--IPQPTIFNG-KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIA 556
Query: 153 LIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE----- 207
L+A+L E + + GP +I++P + L NW EFS + P + Y G P +RK +R+
Sbjct: 557 LLAHLAERENIWGPFLIISPASTLNNWHQEFSRFVPKFKVLPYWGNPHDRKVIRKFWSQK 616
Query: 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR 267
+++ F+V+IT Y L+++D +Y ++V+W YM++DE LK+ K + +Q +
Sbjct: 617 TLYTQNAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSTSVRWKILLQFQCRN 676
Query: 268 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLII 326
RLLLTGTPIQN++ ELW+LL+F++PT+F+S E F EWF+ + + + DE QL
Sbjct: 677 RLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL--- 733
Query: 327 RRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVG--LDTGT 384
RLH +++PF+LRR K +VE L K +++ C +++ Q++ YQ + + + L +
Sbjct: 734 SRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQRLLYQALKNKISIEDLLQSSM 793
Query: 385 GKSK-------SLQNLSMQLRKCCNHPYLF 407
G ++ SL NL MQ RK CNHP LF
Sbjct: 794 GSAQQAHSTTSSLMNLVMQFRKVCNHPDLF 823
Score = 464 (168.4 bits), Expect = 5.5e-110, Sum P(3) = 5.5e-110
Identities = 109/238 (45%), Positives = 151/238 (63%)
Query: 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 475
KE +I SGK LD LL +L+ GHRVL++SQMTR++D+LE Y+ ++RLDGS+K
Sbjct: 1124 KESLITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1183
Query: 476 TEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAH 535
ER ++ F + + F+FLLSTRAGGLG+NL ADTVI +DSDWNP +DQQA DRAH
Sbjct: 1184 ISERRDMVADFQSR-TDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1242
Query: 536 RIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIM 595
R+GQ K+V V+ L+ G+IEE IL+RAK+K I VI G F + KE++
Sbjct: 1243 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKP------KEVV 1296
Query: 596 RRGTSSLGTDVPSEREINRLAARSDEEFWLFE--KMDEERRQKENYRSRLMEDHEVPE 651
S L D E+++ RL R +E+ L E K+ E +R++E Y R ++ + PE
Sbjct: 1297 ----SLLLDDEELEKKL-RL--RQEEKRQLEESSKVKERKRKREKYAERKRKEDD-PE 1346
Score = 44 (20.5 bits), Expect = 2.1e-39, Sum P(3) = 2.1e-39
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 382 TGTGKSKSLQNLSMQLRKCCNHPYLFVGE 410
+G G+S SL N S+Q + P +F G+
Sbjct: 490 SGFGESYSLSNPSIQAGEDIPQPTIFNGK 518
Score = 41 (19.5 bits), Expect = 5.5e-110, Sum P(3) = 5.5e-110
Identities = 22/75 (29%), Positives = 31/75 (41%)
Query: 673 ESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRR--EYLPSEGNESASN 730
E SS +RKRK YA+ K E+ + SK G Y+PS N + S
Sbjct: 1320 EESSKVKERKRKREKYAER-------KRKEDDPE-SKRKKEGVNMVIPYVPSADNSNLSA 1371
Query: 731 STGAEKKNLDMKNEI 745
++DM + I
Sbjct: 1372 DGEDSFISVDMDSAI 1386
Score = 38 (18.4 bits), Expect = 3.0e-65, Sum P(3) = 3.0e-65
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 410 EYNMWRKEEIIRASGKFELLDR 431
EY ++RK +R G ++ +R
Sbjct: 1166 EYMVYRKHTYMRLDGSSKISER 1187
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 646 (232.5 bits), Expect = 1.0e-109, Sum P(2) = 1.0e-109
Identities = 143/365 (39%), Positives = 211/365 (57%)
Query: 28 AAVQRQKDSKHVDGIEPLKDSEXXXXXXXASENGTPRDLHPEEXXXXXXXXXXXXXXLLE 87
A V + DSK+ +P+K ++ NG +D+ + +
Sbjct: 96 APVPAKSDSKNESDTQPIKKRRKTKPKSKSTANGK-QDIVSMLSTNISDSTKSTREAIEK 154
Query: 88 GQRQYNSAIHSIEEKVT--EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLG 145
Q NS+ K+T +QP L+ GG+L+ YQ++GL+W+++LF N LNGILADEMGLG
Sbjct: 155 SQ---NSS------KITNNKQPKLITGGQLKDYQMDGLEWLITLFQNGLNGILADEMGLG 205
Query: 146 KTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAM 205
KT+Q I+ +++L+EN G+ GP ++V P + L NW NE +AP I Y G ER +
Sbjct: 206 KTLQCISFLSHLIEN-GINGPFLVVVPVSTLSNWYNEIRKFAPKIKVTKYIGTKQERNDI 264
Query: 206 REEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQI 265
+ ++ N+++T Y++ +RD L K+ W Y+IVDEGHRLKN +C L K + +
Sbjct: 265 --DLLQQQETTNIILTSYEISIRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLNV 322
Query: 266 QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDR--GQVALT----D 319
RLLLTGTP+QN+L ELWSLLNF+LP IF+ +E F++WFN G++ T D
Sbjct: 323 SNRLLLTGTPLQNNLNELWSLLNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEED 382
Query: 320 EE---------QLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQK-VYY 369
EE Q +I+ LH +++PF+LRR K +V K LP K + +L M+ QK +YY
Sbjct: 383 EETKNLIKLNIQETLIKNLHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIYY 442
Query: 370 QQVTD 374
V D
Sbjct: 443 DAVND 447
Score = 458 (166.3 bits), Expect = 1.0e-109, Sum P(2) = 1.0e-109
Identities = 111/271 (40%), Positives = 159/271 (58%)
Query: 386 KSKSLQNLSM-QLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVL 444
K LQNL M QLR CN P+++ Y + + E+IR S KF++L++LLP L SGH+VL
Sbjct: 573 KHLKLQNLKMIQLRNICNSPFIYYN-YPILDQAEVIRNSAKFQVLNQLLPPLLSSGHKVL 631
Query: 445 LFSQMTRLMDILEIYLK---LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF-MFLLST 500
+F+Q T+++D+LE +L+ L+ K RLDGST + R + QFN ++P F +FL ST
Sbjct: 632 IFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFN--NNPKFKVFLSST 689
Query: 501 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILE 560
RAGGLG+NL ADTVI+ D+DWNPQMD QA DR HRIGQ V++F V SIEEV++
Sbjct: 690 RAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLIS 749
Query: 561 RAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSD 620
R+ K ++ VIQ G F ++ K++ TS+ + ++ IN + S
Sbjct: 750 RSGSKRFLERLVIQMGQFKFSN-------FNKKLTAATTSNEQGAIKNDWSINDMMELSK 802
Query: 621 EEFWLFEKMDEERRQKENYRSRLMEDHEVPE 651
F + + E L+ D E+ E
Sbjct: 803 IHFKSTQNGQTSQDSAEEDEKILLSDQEIDE 833
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 646 (232.5 bits), Expect = 1.0e-109, Sum P(2) = 1.0e-109
Identities = 143/365 (39%), Positives = 211/365 (57%)
Query: 28 AAVQRQKDSKHVDGIEPLKDSEXXXXXXXASENGTPRDLHPEEXXXXXXXXXXXXXXLLE 87
A V + DSK+ +P+K ++ NG +D+ + +
Sbjct: 96 APVPAKSDSKNESDTQPIKKRRKTKPKSKSTANGK-QDIVSMLSTNISDSTKSTREAIEK 154
Query: 88 GQRQYNSAIHSIEEKVT--EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLG 145
Q NS+ K+T +QP L+ GG+L+ YQ++GL+W+++LF N LNGILADEMGLG
Sbjct: 155 SQ---NSS------KITNNKQPKLITGGQLKDYQMDGLEWLITLFQNGLNGILADEMGLG 205
Query: 146 KTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAM 205
KT+Q I+ +++L+EN G+ GP ++V P + L NW NE +AP I Y G ER +
Sbjct: 206 KTLQCISFLSHLIEN-GINGPFLVVVPVSTLSNWYNEIRKFAPKIKVTKYIGTKQERNDI 264
Query: 206 REEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQI 265
+ ++ N+++T Y++ +RD L K+ W Y+IVDEGHRLKN +C L K + +
Sbjct: 265 --DLLQQQETTNIILTSYEISIRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLNV 322
Query: 266 QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDR--GQVALT----D 319
RLLLTGTP+QN+L ELWSLLNF+LP IF+ +E F++WFN G++ T D
Sbjct: 323 SNRLLLTGTPLQNNLNELWSLLNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEED 382
Query: 320 EE---------QLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQK-VYY 369
EE Q +I+ LH +++PF+LRR K +V K LP K + +L M+ QK +YY
Sbjct: 383 EETKNLIKLNIQETLIKNLHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIYY 442
Query: 370 QQVTD 374
V D
Sbjct: 443 DAVND 447
Score = 458 (166.3 bits), Expect = 1.0e-109, Sum P(2) = 1.0e-109
Identities = 111/271 (40%), Positives = 159/271 (58%)
Query: 386 KSKSLQNLSM-QLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVL 444
K LQNL M QLR CN P+++ Y + + E+IR S KF++L++LLP L SGH+VL
Sbjct: 573 KHLKLQNLKMIQLRNICNSPFIYYN-YPILDQAEVIRNSAKFQVLNQLLPPLLSSGHKVL 631
Query: 445 LFSQMTRLMDILEIYLK---LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF-MFLLST 500
+F+Q T+++D+LE +L+ L+ K RLDGST + R + QFN ++P F +FL ST
Sbjct: 632 IFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFN--NNPKFKVFLSST 689
Query: 501 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILE 560
RAGGLG+NL ADTVI+ D+DWNPQMD QA DR HRIGQ V++F V SIEEV++
Sbjct: 690 RAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLIS 749
Query: 561 RAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSD 620
R+ K ++ VIQ G F ++ K++ TS+ + ++ IN + S
Sbjct: 750 RSGSKRFLERLVIQMGQFKFSN-------FNKKLTAATTSNEQGAIKNDWSINDMMELSK 802
Query: 621 EEFWLFEKMDEERRQKENYRSRLMEDHEVPE 651
F + + E L+ D E+ E
Sbjct: 803 IHFKSTQNGQTSQDSAEEDEKILLSDQEIDE 833
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 672 (241.6 bits), Expect = 2.2e-109, Sum P(3) = 2.2e-109
Identities = 134/304 (44%), Positives = 191/304 (62%)
Query: 104 TEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
T P LL+G +LR YQ GL W+++++ LNGILADEMGLGKTIQTI+L+A+L KG
Sbjct: 615 TPIPLLLRG-QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGN 673
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+I+ P +V+ NW E W PS + Y G ERK R+ + ++ F+V IT Y
Sbjct: 674 WGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW-TKPNAFHVCITSY 732
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
L+++D Q ++ W Y+I+DE +KN + +++ + QRRLLLTGTP+QNSL EL
Sbjct: 733 KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMEL 792
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343
WSL++FL+P +F S F+EWF+ P G + + E +++RLH V+RPF+LRR K
Sbjct: 793 WSLMHFLMPHVFQSHREFKEWFSNPLT--GMIEGSQEYNEGLVKRLHKVLRPFLLRRVKV 850
Query: 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 403
+VEK +P K + +++C +S Q+ Y TG S+ N+ MQLRK CNH
Sbjct: 851 DVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVINILMQLRKVCNH 910
Query: 404 PYLF 407
P LF
Sbjct: 911 PNLF 914
Score = 449 (163.1 bits), Expect = 2.2e-109, Sum P(3) = 2.2e-109
Identities = 116/331 (35%), Positives = 179/331 (54%)
Query: 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 483
GK + L LL +L+ GHRVL+F+QMTR++D+LE +L + +LRLDGST+ E+R L+
Sbjct: 2043 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALM 2102
Query: 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543
++FNA D F F+LSTR+GG+G+NL ADTV+ +DSDWNP MD QA+DR HRIGQ ++V
Sbjct: 2103 ERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 2161
Query: 544 RVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSS-L 602
++ L+S ++EE IL++A QK + I+ G F +TA +++ ++E+
Sbjct: 2162 HIYRLISERTVEENILKKANQKRMLGDMAIEGGNF---TTAYFKQQTIRELFDMPLEEPS 2218
Query: 603 GTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEE 662
G+ VPS E S + + E+ +E+ R+ E + A A N E
Sbjct: 2219 GSSVPSAPEDEEETVASKQTH-ILEQALCRAEDEEDIRAATQAKAE--QVAELAEFN--E 2273
Query: 663 QKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKRREYLP 721
GF G G E+ + + + + ++ + +E + S RE L
Sbjct: 2274 NDGFPAGEGEEAGRPGAEDEEMSRAEQEIAALVEQLTPIERYAMKFLEASLEEVSREEL- 2332
Query: 722 SEGNESASNSTGAEKKNLDM-KNEIFPLASE 751
+ A A +K+LD K E+F L E
Sbjct: 2333 ----KQAEEQVEAARKDLDQAKEEVFRLPQE 2359
Score = 46 (21.3 bits), Expect = 2.2e-109, Sum P(3) = 2.2e-109
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 750 SEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSE 784
SEG+S D GS P R R E+ I+ KSE
Sbjct: 3050 SEGSSSDEDGSRPLT-RLARLRLEAEGIRG-RKSE 3082
Score = 46 (21.3 bits), Expect = 4.7e-67, Sum P(3) = 4.7e-67
Identities = 26/88 (29%), Positives = 35/88 (39%)
Query: 593 EIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMED-HEVPE 651
E M R + V I R A + E L E EE +Q E +D + E
Sbjct: 2293 EEMSRAEQEIAALVEQLTPIERYAMKFLEAS-LEEVSREELKQAEEQVEAARKDLDQAKE 2351
Query: 652 WAYSAPDNKEEQKGFEKGFGHESSSITG 679
+ P +EE++G G G E S TG
Sbjct: 2352 EVFRLP--QEEEEG--PGAGDEVSCGTG 2375
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 1077 (384.2 bits), Expect = 2.6e-109, Sum P(2) = 2.6e-109
Identities = 276/710 (38%), Positives = 395/710 (55%)
Query: 105 EQPTLLQGGE---LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
+QP+ + G E LR YQL GL W+ + + ILADEMGLGKTIQTI+ + YL
Sbjct: 464 KQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 523
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR-EEFF---SERGRFN 217
+ GP ++V P + L +W E TWAP + AVVY G R +R E+ ++R +FN
Sbjct: 524 QLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFN 583
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
+L+T Y+++++D+ +L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+Q
Sbjct: 584 ILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 643
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
NSL+ELWSLL+F++P F+S E+FEE + ++ G +L H + PF+
Sbjct: 644 NSLKELWSLLHFIMPEKFSSWEDFEEE-HGKGREYGYASL------------HKELEPFL 690
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQ 396
LRR K +VEK LP K + IL+ +MSA QK YY+ + L G+ G + N+ M+
Sbjct: 691 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 750
Query: 397 LRKCCNHPYLFV--GEYNMWRKEE----IIRASGKFELLDRLLPKLRKSGHRVLLFSQMT 450
L+KCCNH YL + + K+E +IR+SGK LLD+LL +LR+ G+RVL+FSQM
Sbjct: 751 LKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMV 810
Query: 451 RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 510
R++DIL YLK F F RLDGS K E R L FNA S F FLLSTRAGGLG+NL
Sbjct: 811 RMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLA 870
Query: 511 TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 570
+ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ GS+EE ILERAK+KM +D
Sbjct: 871 SADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDH 930
Query: 571 KVIQ----AG--LFNTTSTAQD----RREMLKEIMRRGTSSLGTDVPSEREINRLAARSD 620
VIQ G + +T ST +E L I++ G L + P E D
Sbjct: 931 LVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAILKFGAEELFKE-PEGEEQEPQEMDID 989
Query: 621 EEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGK 680
E E + E L+ +V ++ D+ E + E + +
Sbjct: 990 EILKRAETRENEPGPL-TVGDELLSQFKVANFSNMDEDDIELEPERNSRNWEEIIPESQR 1048
Query: 681 RKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNL 739
R+ +E L ++ + + N + IS + G+R G++S S + K
Sbjct: 1049 RRIEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSITERKRPKKR 1108
Query: 740 DMKNEIFPLASEGTSEDT---FGSAPKRLR--FERRNSESSDIQSVEKSE 784
I +G S+ F + K+ ER ++ + D + V+KSE
Sbjct: 1109 GRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAVARDAELVDKSE 1158
Score = 40 (19.1 bits), Expect = 2.6e-109, Sum P(2) = 2.6e-109
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 730 NSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESS 775
N A K ++K++ P SE + ED K + N E S
Sbjct: 1337 NKMKASKIKEEIKSDSSPQPSEKSDEDDDEEDNKVNEIKSENKEKS 1382
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 1088 (388.1 bits), Expect = 2.6e-109, P = 2.6e-109
Identities = 274/663 (41%), Positives = 378/663 (57%)
Query: 105 EQPTLLQGG--ELRAYQLEGLQWMLSLFNNNLNG-ILADEMGLGKTIQTIALIAYLLENK 161
+QP L G ELR YQLEGL W+ + N N ILADEMGLGKTIQTI+ ++YL
Sbjct: 460 KQPAYLGGENLELRDYQLEGLNWLAHSWCNRSNSVILADEMGLGKTIQTISFLSYLFHQH 519
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF---SERGRFN 217
+ GP +IV P + L +W EF WAP I VVY G R +RE E+ ++R +FN
Sbjct: 520 QLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFN 579
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
LIT Y+++++D+ L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+Q
Sbjct: 580 ALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 639
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
NSL+ELWSLL+F++P F E+FEE D G+ + L H V+ PF+
Sbjct: 640 NSLKELWSLLHFIMPEKFEFWEDFEE-------DHGKGRENGYQSL------HKVLEPFL 686
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQ 396
LRR K +VEK LP K + IL+ +MSA QK YY+ + L GT G + N+ M+
Sbjct: 687 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVME 746
Query: 397 LRKCCNHPYLFVGEYNMWRK--EEI----IRASGKFELLDRLLPKLRKSGHRVLLFSQMT 450
L+KCCNH YL R+ +EI IR+SGK LLD+LL +LR+ G+RVL+FSQM
Sbjct: 747 LKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMV 806
Query: 451 RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 510
R++DIL YL + + F RLDGS K E R L FNA S F FLLSTRAGGLG+NL
Sbjct: 807 RMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLA 866
Query: 511 TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 570
+ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ G++EE I+ERAK+KM +D
Sbjct: 867 SADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDH 926
Query: 571 KVIQ----AG---LFNTTSTAQDR---REMLKEIMRRGTSSLGTDVPSEREINRLAARSD 620
VIQ G L N + + +E L I++ G L ++ E E D
Sbjct: 927 LVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGE-ESEPQEMDID 985
Query: 621 EEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQ---KGFEKGFGHES-SS 676
E L E + E + L+ +V +A + + E+ K +++ E
Sbjct: 986 EILRLAETRENE--VSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKK 1043
Query: 677 ITGKRKRKEV--VYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGA 734
+ + ++KE+ +Y KA N D S R +R S +ES ++ +
Sbjct: 1044 VEEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQR----SSASESETDESDD 1099
Query: 735 EKK 737
+KK
Sbjct: 1100 DKK 1102
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 1087 (387.7 bits), Expect = 3.1e-109, P = 3.1e-109
Identities = 272/662 (41%), Positives = 379/662 (57%)
Query: 105 EQPTLLQGG--ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
+QPT L G ELR YQLEGL W+ + + + ILADEMGLGKTIQTI+ ++YL
Sbjct: 441 KQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 500
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF---SERGRFNV 218
+ GP +IV P + L +W EF WAP I VVY G R +RE E+ ++R +FN
Sbjct: 501 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 560
Query: 219 LITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 278
LIT Y+++++D+ L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+QN
Sbjct: 561 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQN 620
Query: 279 SLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338
SL+ELWSLL+F++P F E+FEE D G+ + L H V+ PF+L
Sbjct: 621 SLKELWSLLHFIMPEKFEFWEDFEE-------DHGKGRENGYQSL------HKVLEPFLL 667
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQL 397
RR K +VEK LP K + IL+ +MSA QK YY+ + L GT G + N+ M+L
Sbjct: 668 RRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMEL 727
Query: 398 RKCCNHPYLFVGEYNMWRK--EEI----IRASGKFELLDRLLPKLRKSGHRVLLFSQMTR 451
+KCCNH YL R+ +E+ IR+SGK LLD+LL +LR+ G+RVL+FSQM R
Sbjct: 728 KKCCNHCYLIKPPEENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVR 787
Query: 452 LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 511
++DIL YL + + F RLDGS K E R L FNA S F FLLSTRAGGLG+NL +
Sbjct: 788 MLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLAS 847
Query: 512 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 571
ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ G++EE I+ERAK+KM +D
Sbjct: 848 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHL 907
Query: 572 VIQ----AG---LFNTTSTAQDR---REMLKEIMRRGTSSLGTDVPSEREINRLAARSDE 621
VIQ G L N + + +E L I++ G L ++ E E DE
Sbjct: 908 VIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGE-ESEPQEMDIDE 966
Query: 622 EFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQ---KGFEKGFGHES-SSI 677
L E + E + L+ +V +A + + E+ K +++ E +
Sbjct: 967 ILRLAETRENE--VSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKV 1024
Query: 678 TGKRKRKEV--VYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAE 735
+ ++KE+ +Y KA N D S R +R S +ES ++ + +
Sbjct: 1025 EEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQR----SSASESETDDSDDD 1080
Query: 736 KK 737
KK
Sbjct: 1081 KK 1082
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 672 (241.6 bits), Expect = 3.6e-109, Sum P(3) = 3.6e-109
Identities = 134/304 (44%), Positives = 191/304 (62%)
Query: 104 TEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
T P LL+G +LR YQ GL W+++++ LNGILADEMGLGKTIQTI+L+A+L KG
Sbjct: 608 TPIPLLLRG-QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGN 666
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+I+ P +V+ NW E W PS + Y G ERK R+ + ++ F+V IT Y
Sbjct: 667 WGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW-TKPNAFHVCITSY 725
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
L+++D Q ++ W Y+I+DE +KN + +++ + QRRLLLTGTP+QNSL EL
Sbjct: 726 KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMEL 785
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343
WSL++FL+P +F S F+EWF+ P G + + E +++RLH V+RPF+LRR K
Sbjct: 786 WSLMHFLMPHVFQSHREFKEWFSNPLT--GMIEGSQEYNEGLVKRLHKVLRPFLLRRVKV 843
Query: 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 403
+VEK +P K + +++C +S Q+ Y TG S+ N+ MQLRK CNH
Sbjct: 844 DVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVINILMQLRKVCNH 903
Query: 404 PYLF 407
P LF
Sbjct: 904 PNLF 907
Score = 452 (164.2 bits), Expect = 3.6e-109, Sum P(3) = 3.6e-109
Identities = 117/331 (35%), Positives = 177/331 (53%)
Query: 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 483
GK + L LL +L+ GHRVL+F+QMTR++D+LE +L + +LRLDGST+ E+R L+
Sbjct: 2043 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALM 2102
Query: 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543
++FNA D F F+LSTR+GG+G+NL ADTV+ +DSDWNP MD QA+DR HRIGQ ++V
Sbjct: 2103 ERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 2161
Query: 544 RVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDR-REMLKEIMRRGTSSL 602
++ L+S ++EE IL++A QK + I+ G F T Q RE+ + +SS
Sbjct: 2162 HIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEEPSSSS 2221
Query: 603 GTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEE 662
P E E +A++ + E+ +E+ R+ E + A A N E
Sbjct: 2222 VPSAPEEEE-ETVASKQTH---ILEQALCRAEDEEDIRAATQAKAE--QVAELAEFN--E 2273
Query: 663 QKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKRREYLP 721
GF G G E+ + + + + ++ + +E + S RE L
Sbjct: 2274 NDGFPAGEGEEAGRPGAEDEEMSRAEQEIAALVEQLTPIERYAMKFLEASLEEVSREEL- 2332
Query: 722 SEGNESASNSTGAEKKNLDM-KNEIFPLASE 751
+ A A +K+LD K E+F L E
Sbjct: 2333 ----KQAEEQVEAARKDLDQAKEEVFRLPQE 2359
Score = 52 (23.4 bits), Expect = 3.7e-67, Sum P(3) = 3.7e-67
Identities = 27/88 (30%), Positives = 36/88 (40%)
Query: 593 EIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMED-HEVPE 651
E M R + V I R A + E L E EE +Q E +D + E
Sbjct: 2293 EEMSRAEQEIAALVEQLTPIERYAMKFLEAS-LEEVSREELKQAEEQVEAARKDLDQAKE 2351
Query: 652 WAYSAPDNKEEQKGFEKGFGHESSSITG 679
+ P +EE++G G G ESS TG
Sbjct: 2352 EVFRLP--QEEEEG--PGAGDESSCGTG 2375
Score = 41 (19.5 bits), Expect = 3.6e-109, Sum P(3) = 3.6e-109
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 750 SEGTSEDTFGSAP----KRLRFE 768
SEG+S D GS P RLR E
Sbjct: 3050 SEGSSSDEDGSRPLTRLARLRLE 3072
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 672 (241.6 bits), Expect = 3.7e-109, Sum P(3) = 3.7e-109
Identities = 134/304 (44%), Positives = 191/304 (62%)
Query: 104 TEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
T P LL+G +LR YQ GL W+++++ LNGILADEMGLGKTIQTI+L+A+L KG
Sbjct: 616 TPIPLLLRG-QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGN 674
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+I+ P +V+ NW E W PS + Y G ERK R+ + ++ F+V IT Y
Sbjct: 675 WGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW-TKPNAFHVCITSY 733
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
L+++D Q ++ W Y+I+DE +KN + +++ + QRRLLLTGTP+QNSL EL
Sbjct: 734 KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMEL 793
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343
WSL++FL+P +F S F+EWF+ P G + + E +++RLH V+RPF+LRR K
Sbjct: 794 WSLMHFLMPHVFQSHREFKEWFSNPLT--GMIEGSQEYNEGLVKRLHKVLRPFLLRRVKV 851
Query: 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 403
+VEK +P K + +++C +S Q+ Y TG S+ N+ MQLRK CNH
Sbjct: 852 DVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVINILMQLRKVCNH 911
Query: 404 PYLF 407
P LF
Sbjct: 912 PNLF 915
Score = 446 (162.1 bits), Expect = 3.7e-109, Sum P(3) = 3.7e-109
Identities = 115/331 (34%), Positives = 179/331 (54%)
Query: 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 483
GK + L LL +L+ GHRVL+F+QMTR++D+LE +L + +LRLDGST+ E+R L+
Sbjct: 2054 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALM 2113
Query: 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543
++FNA D F F+LSTR+GG+G+NL ADTV+ +DSDWNP MD QA+DR HRIGQ ++V
Sbjct: 2114 ERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 2172
Query: 544 RVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSS-L 602
++ L+S ++EE IL++A QK + I+ G F +TA +++ ++E+
Sbjct: 2173 HIYRLISERTVEENILKKANQKRMLGDMAIEGGNF---TTAYFKQQTIRELFDMPLEEPS 2229
Query: 603 GTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEE 662
G+ VPS + S + + E+ +E+ R+ E + A A N E
Sbjct: 2230 GSSVPSAPDDEEETVASKQTH-ILEQALCRAEDEEDIRAATQAKAE--QVAELAEFN--E 2284
Query: 663 QKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKRREYLP 721
GF G G E+ + + + + ++ + +E + S RE L
Sbjct: 2285 NDGFTAGEGEEAGRPGAEDEEMSRAEQEIAALVEQLTPIERYAMKFLEASLEEVSREEL- 2343
Query: 722 SEGNESASNSTGAEKKNLDM-KNEIFPLASE 751
+ A A +K+LD K E+F L E
Sbjct: 2344 ----KQAEEQVEAARKDLDQAKEEVFRLPQE 2370
Score = 47 (21.6 bits), Expect = 3.7e-109, Sum P(3) = 3.7e-109
Identities = 22/59 (37%), Positives = 28/59 (47%)
Query: 750 SEGTSEDTFGSAP----KRLRFER-----RNSESSDIQSVEKSEHKGVQGSGLNGHILT 799
SEG+S D GS P RLR E R SE S + +V + + + SG G LT
Sbjct: 3062 SEGSSSDEDGSRPLTRLARLRLEAEGVRGRKSEGSMVVAVIQDD-LDLADSGPGGLELT 3119
Score = 46 (21.3 bits), Expect = 3.7e-67, Sum P(3) = 3.7e-67
Identities = 26/88 (29%), Positives = 35/88 (39%)
Query: 593 EIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMED-HEVPE 651
E M R + V I R A + E L E EE +Q E +D + E
Sbjct: 2304 EEMSRAEQEIAALVEQLTPIERYAMKFLEAS-LEEVSREELKQAEEQVEAARKDLDQAKE 2362
Query: 652 WAYSAPDNKEEQKGFEKGFGHESSSITG 679
+ P +EE++G G G E S TG
Sbjct: 2363 EVFRLP--QEEEEG--PGAGDEVSCGTG 2386
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 1077 (384.2 bits), Expect = 3.9e-109, Sum P(2) = 3.9e-109
Identities = 278/711 (39%), Positives = 399/711 (56%)
Query: 105 EQPTLL---QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
+QP+ + +G ELR YQL GL W+ + + ILADEMGLGKTIQTI+ + YL
Sbjct: 468 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 527
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS----ERGRFN 217
+ GP ++V P + L +W E TWA + AVVY G + R +R ++ +R +FN
Sbjct: 528 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFN 587
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
+L+T Y+++++D+ +L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+Q
Sbjct: 588 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 647
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
NSL+ELWSLL+F++P F+S E+FEE + ++ G +L H + PF+
Sbjct: 648 NSLKELWSLLHFIMPEKFSSWEDFEEE-HGKGREYGYASL------------HKELEPFL 694
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQ 396
LRR K +VEK LP K + IL+ +MSA QK YY+ + L G+ G + N+ M+
Sbjct: 695 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 754
Query: 397 LRKCCNHPYLFVGEYN--MWRKEE----IIRASGKFELLDRLLPKLRKSGHRVLLFSQMT 450
L+KCCNH YL N + K+E +IR+SGK LLD+LL +LR+ G+RVL+FSQM
Sbjct: 755 LKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMV 814
Query: 451 RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 510
R++DIL YLK F F RLDGS K E R L FNA S F FLLSTRAGGLG+NL
Sbjct: 815 RMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLA 874
Query: 511 TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 570
+ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ GS+EE ILERAK+KM +D
Sbjct: 875 SADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDH 934
Query: 571 KVIQ----AG--LFNT----TSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSD 620
VIQ G + +T +S+ +E L I++ G L + P E D
Sbjct: 935 LVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKE-PEGEEQEPQEMDID 993
Query: 621 EEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKE-EQKGFEKGFGHESSSITG 679
E E + E L+ +V ++ D+ E E + K + E
Sbjct: 994 EILKRAETHENEPGPL-TVGDELLSQFKVANFSNMDEDDIELEPERNSKNW-EEIIPEDQ 1051
Query: 680 KRKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKRREYLPSEGNESASNSTGAEKKN 738
+R+ +E L ++ + + N + IS + G+R G++S S S G K
Sbjct: 1052 RRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISEGKRPKK 1111
Query: 739 LDMKNEIFPLASEGTSEDT---FGSAPKRLR--FERRNSESSDIQSVEKSE 784
I +G S+ F + K+ ER ++ + D + V+KSE
Sbjct: 1112 RGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSE 1162
Score = 38 (18.4 bits), Expect = 3.9e-109, Sum P(2) = 3.9e-109
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 777 IQSVEKSEHKGVQGSGLNGHIL 798
I+ ++S+ Q S LN H++
Sbjct: 1501 IKKRQESQQNSDQNSNLNPHVI 1522
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 1087 (387.7 bits), Expect = 5.1e-109, P = 5.1e-109
Identities = 273/662 (41%), Positives = 377/662 (56%)
Query: 105 EQPTLLQGG--ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
+QP L G ELR YQLEGL W+ + N + ILADEMGLGKTIQTI+ ++YL
Sbjct: 472 KQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQ 531
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF---SERGRFNV 218
+ GP +IV P + L +W EF WAP I VVY G R +RE E+ ++R +FN
Sbjct: 532 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 591
Query: 219 LITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 278
LIT Y+++++D+ L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+QN
Sbjct: 592 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQN 651
Query: 279 SLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338
SL+ELWSLL+F++P F E+FEE D G+ + L H V+ PF+L
Sbjct: 652 SLKELWSLLHFIMPEKFEFWEDFEE-------DHGKGRENGYQSL------HKVLEPFLL 698
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQL 397
RR K +VEK LP K + IL+ +MSA QK YY+ + L GT G + N+ M+L
Sbjct: 699 RRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMEL 758
Query: 398 RKCCNHPYLFVGEYNMWRK--EEI----IRASGKFELLDRLLPKLRKSGHRVLLFSQMTR 451
+KCCNH YL R+ +EI IR+SGK LLD+LL +LR+ G+RVL+FSQM R
Sbjct: 759 KKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVR 818
Query: 452 LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 511
++DIL YL + + F RLDGS K E R L FNA S F FLLSTRAGGLG+NL +
Sbjct: 819 MLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLAS 878
Query: 512 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 571
ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ G++EE I+ERAK+KM +D
Sbjct: 879 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHL 938
Query: 572 VIQ----AG---LFNTTSTAQDR---REMLKEIMRRGTSSLGTDVPSEREINRLAARSDE 621
VIQ G L N + + +E L I++ G L ++ E E DE
Sbjct: 939 VIQRMDTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGE-ESEPQEMDIDE 997
Query: 622 EFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQ---KGFEKGFGHES-SSI 677
L E + E + L+ +V +A + + E+ K +++ E +
Sbjct: 998 ILRLAETRENE--VSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKV 1055
Query: 678 TGKRKRKEV--VYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAE 735
+ ++KE+ +Y KA N D S R +R S +ES + + +
Sbjct: 1056 EEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQR----SSASESETEDSDDD 1111
Query: 736 KK 737
KK
Sbjct: 1112 KK 1113
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 1087 (387.7 bits), Expect = 5.1e-109, P = 5.1e-109
Identities = 272/662 (41%), Positives = 379/662 (57%)
Query: 105 EQPTLLQGG--ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
+QPT L G ELR YQLEGL W+ + + + ILADEMGLGKTIQTI+ ++YL
Sbjct: 475 KQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 534
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF---SERGRFNV 218
+ GP +IV P + L +W EF WAP I VVY G R +RE E+ ++R +FN
Sbjct: 535 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 594
Query: 219 LITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 278
LIT Y+++++D+ L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+QN
Sbjct: 595 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQN 654
Query: 279 SLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338
SL+ELWSLL+F++P F E+FEE D G+ + L H V+ PF+L
Sbjct: 655 SLKELWSLLHFIMPEKFEFWEDFEE-------DHGKGRENGYQSL------HKVLEPFLL 701
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQL 397
RR K +VEK LP K + IL+ +MSA QK YY+ + L GT G + N+ M+L
Sbjct: 702 RRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMEL 761
Query: 398 RKCCNHPYLFVGEYNMWRK--EEI----IRASGKFELLDRLLPKLRKSGHRVLLFSQMTR 451
+KCCNH YL R+ +E+ IR+SGK LLD+LL +LR+ G+RVL+FSQM R
Sbjct: 762 KKCCNHCYLIKPPEENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVR 821
Query: 452 LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 511
++DIL YL + + F RLDGS K E R L FNA S F FLLSTRAGGLG+NL +
Sbjct: 822 MLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLAS 881
Query: 512 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 571
ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ G++EE I+ERAK+KM +D
Sbjct: 882 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHL 941
Query: 572 VIQ----AG---LFNTTSTAQDR---REMLKEIMRRGTSSLGTDVPSEREINRLAARSDE 621
VIQ G L N + + +E L I++ G L ++ E E DE
Sbjct: 942 VIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGE-ESEPQEMDIDE 1000
Query: 622 EFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQ---KGFEKGFGHES-SSI 677
L E + E + L+ +V +A + + E+ K +++ E +
Sbjct: 1001 ILRLAETRENE--VSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKV 1058
Query: 678 TGKRKRKEV--VYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAE 735
+ ++KE+ +Y KA N D S R +R S +ES ++ + +
Sbjct: 1059 EEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQR----SSASESETDDSDDD 1114
Query: 736 KK 737
KK
Sbjct: 1115 KK 1116
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 1087 (387.7 bits), Expect = 5.2e-109, P = 5.2e-109
Identities = 269/662 (40%), Positives = 378/662 (57%)
Query: 105 EQPTLLQGG--ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
+QP L G ELR YQLEGL W+ + + + ILADEMGLGKTIQTI+ ++YL
Sbjct: 479 KQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 538
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF---SERGRFNV 218
+ GP +IV P + L +W EF WAP + VVY G R +RE E+ ++R +FN
Sbjct: 539 LYGPFLIVVPLSTLTSWQREFEIWAPEVNVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 598
Query: 219 LITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 278
LIT Y+++++D+ L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+QN
Sbjct: 599 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQN 658
Query: 279 SLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338
SL+ELWSLL+F++P F E+FEE D G+ + L H V+ PF+L
Sbjct: 659 SLKELWSLLHFIMPEKFEFWEDFEE-------DHGKGRENGYQSL------HKVLEPFLL 705
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQL 397
RR K +VEK LP K + IL+ +MSA QK YY+ + L GT G + N+ M+L
Sbjct: 706 RRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMEL 765
Query: 398 RKCCNHPYLFVGEYNMWRK------EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTR 451
+KCCNH YL + R+ + +IR+SGK LLD+LL +LR+ G+RVL+FSQM R
Sbjct: 766 KKCCNHCYLIRAPEDSERETGQEVLQSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVR 825
Query: 452 LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 511
++DIL YL + + F RLDGS K E R L FNA S F FLLSTRAGGLG+NL +
Sbjct: 826 MLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLAS 885
Query: 512 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 571
ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ G++EE I+ERAK+KM +D
Sbjct: 886 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHL 945
Query: 572 VIQ----AG---LFNTTSTAQDR---REMLKEIMRRGTSSLGTDVPSEREINRLAARSDE 621
VIQ G L N + + +E L I++ G L ++ E E DE
Sbjct: 946 VIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKEIEGE-ESEPQEMDIDE 1004
Query: 622 EFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQ---KGFEKGFGHES-SSI 677
L E + E + L+ +V +A + + E+ K +++ E +
Sbjct: 1005 ILRLAETRENE--VSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKV 1062
Query: 678 TGKRKRKEV--VYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAE 735
+ ++KE+ +Y KA N D S R +R S +ES ++ + +
Sbjct: 1063 EEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQR----SSASESETDDSDDD 1118
Query: 736 KK 737
KK
Sbjct: 1119 KK 1120
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 1087 (387.7 bits), Expect = 5.3e-109, P = 5.3e-109
Identities = 272/662 (41%), Positives = 379/662 (57%)
Query: 105 EQPTLLQGG--ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
+QPT L G ELR YQLEGL W+ + + + ILADEMGLGKTIQTI+ ++YL
Sbjct: 485 KQPTYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 544
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF---SERGRFNV 218
+ GP +IV P + L +W EF WAP I VVY G R +RE E+ ++R +FN
Sbjct: 545 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 604
Query: 219 LITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 278
LIT Y+++++D+ L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+QN
Sbjct: 605 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQN 664
Query: 279 SLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338
SL+ELWSLL+F++P F E+FEE D G+ + L H V+ PF+L
Sbjct: 665 SLKELWSLLHFIMPEKFEFWEDFEE-------DHGKGRENGYQSL------HKVLEPFLL 711
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQL 397
RR K +VEK LP K + IL+ +MSA QK YY+ + L GT G + N+ M+L
Sbjct: 712 RRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMEL 771
Query: 398 RKCCNHPYLFVGEYNMWRK--EEI----IRASGKFELLDRLLPKLRKSGHRVLLFSQMTR 451
+KCCNH YL R+ +E+ IR+SGK LLD+LL +LR+ G+RVL+FSQM R
Sbjct: 772 KKCCNHCYLIKPPEENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVR 831
Query: 452 LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 511
++DIL YL + + F RLDGS K E R L FNA S F FLLSTRAGGLG+NL +
Sbjct: 832 MLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLAS 891
Query: 512 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 571
ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ G++EE I+ERAK+KM +D
Sbjct: 892 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHL 951
Query: 572 VIQ----AG---LFNTTSTAQDR---REMLKEIMRRGTSSLGTDVPSEREINRLAARSDE 621
VIQ G L N + + +E L I++ G L ++ E E DE
Sbjct: 952 VIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGE-ESEPQEMDIDE 1010
Query: 622 EFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQ---KGFEKGFGHES-SSI 677
L E + E + L+ +V +A + + E+ K +++ E +
Sbjct: 1011 ILRLAETRENE--VSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKV 1068
Query: 678 TGKRKRKEV--VYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAE 735
+ ++KE+ +Y KA N D S R +R S +ES ++ + +
Sbjct: 1069 EEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQR----SSASESETDDSDDD 1124
Query: 736 KK 737
KK
Sbjct: 1125 KK 1126
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 1072 (382.4 bits), Expect = 6.7e-109, Sum P(2) = 6.7e-109
Identities = 278/711 (39%), Positives = 400/711 (56%)
Query: 105 EQPTLL---QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
+QP+ + +G ELR YQL GL W+ + + ILADEMGLGKTIQTI+ + YL
Sbjct: 466 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 525
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR-EEFF---SERGRFN 217
+ GP ++V P + L +W E TWA + AVVY G + R +R E+ ++R +FN
Sbjct: 526 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 585
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
+L+T Y+++++D+ +L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+Q
Sbjct: 586 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 645
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
NSL+ELWSLL+F++P F+S E+FEE + ++ G +L H + PF+
Sbjct: 646 NSLKELWSLLHFIMPEKFSSWEDFEEE-HGKGREYGYASL------------HKELEPFL 692
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQ 396
LRR K +VEK LP K + IL+ +MSA QK YY+ + L G+ G + N+ M+
Sbjct: 693 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 752
Query: 397 LRKCCNHPYLFVGEYN--MWRKEE----IIRASGKFELLDRLLPKLRKSGHRVLLFSQMT 450
L+KCCNH YL N + K+E +IR+SGK LLD+LL +LR+ G+RVL+FSQM
Sbjct: 753 LKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMV 812
Query: 451 RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 510
R++DIL YLK F F RLDGS K E R L FNA S F FLLSTRAGGLG+NL
Sbjct: 813 RMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLA 872
Query: 511 TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 570
+ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ GS+EE ILERAK+KM +D
Sbjct: 873 SADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDH 932
Query: 571 KVIQ----AG--LFNT----TSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSD 620
VIQ G + +T +S+ +E L I++ G L + P E D
Sbjct: 933 LVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKE-PEGEEQEPQEMDID 991
Query: 621 EEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKE-EQKGFEKGFGHESSSITG 679
E E + E + L+ +V ++ D+ E E + K + E
Sbjct: 992 EILKRAETHENEPGPL-SVGDELLSQFKVANFSNMDEDDIELEPERNSKNW-EEIIPEEQ 1049
Query: 680 KRKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKRREYLPSEGNESASNSTGAEKKN 738
+R+ +E L ++ + + N + IS + G+R G++S S S K
Sbjct: 1050 RRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISERKRPKK 1109
Query: 739 LDMKNEIFPLASEGTSEDT---FGSAPKRLR--FERRNSESSDIQSVEKSE 784
I +G S+ F + K+ ER ++ + D + V+KSE
Sbjct: 1110 RGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSE 1160
Score = 41 (19.5 bits), Expect = 6.7e-109, Sum P(2) = 6.7e-109
Identities = 19/94 (20%), Positives = 42/94 (44%)
Query: 715 KRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSES 774
K+R+ +++++ +T +N DM+ + +S D++ S ++ + +
Sbjct: 1502 KKRQESQQNSDQNSNVATTHVIRNPDMERLKENTNHDDSSRDSYSSDRHLSQYHDHHKDR 1561
Query: 775 SDIQSVEKSE-HKGVQGSGLNG--HILTWNTHRK 805
S +KS+ K S NG H W+ +R+
Sbjct: 1562 HQGDSYKKSDSRKRPYSSFSNGKDH-REWDHYRQ 1594
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 1069 (381.4 bits), Expect = 6.9e-109, Sum P(2) = 6.9e-109
Identities = 278/711 (39%), Positives = 398/711 (55%)
Query: 105 EQPTLLQGGE---LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
+QP+ + G E LR YQL GL W+ + + ILADEMGLGKTIQTI+ + YL
Sbjct: 450 KQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 509
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR-EEFF---SERGRFN 217
+ GP ++V P + L +W E TWA + AVVY G + R +R E+ ++R +FN
Sbjct: 510 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 569
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
+L+T Y+++++D+ +L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+Q
Sbjct: 570 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 629
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
NSL+ELWSLL+F++P F+S E+FEE + ++ G +L H + PF+
Sbjct: 630 NSLKELWSLLHFIMPEKFSSWEDFEEE-HGKGREYGYASL------------HKELEPFL 676
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQ 396
LRR K +VEK LP K + IL+ +MSA QK YY+ + L G+ G + N+ M+
Sbjct: 677 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 736
Query: 397 LRKCCNHPYLFVGEYN--MWRKEE----IIRASGKFELLDRLLPKLRKSGHRVLLFSQMT 450
L+KCCNH YL N + K+E +IR+SGK LLD+LL +LR+ G+RVL+FSQM
Sbjct: 737 LKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMV 796
Query: 451 RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 510
R++DIL YLK F F RLDGS K E R L FNA S F FLLSTRAGGLG+NL
Sbjct: 797 RMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLA 856
Query: 511 TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 570
+ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ GS+EE ILERAK+KM +D
Sbjct: 857 SADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDH 916
Query: 571 KVIQ----AG--LFNT----TSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSD 620
VIQ G + +T +S+ +E L I++ G L + P E D
Sbjct: 917 LVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKE-PEGEEQEPQEMDID 975
Query: 621 EEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKE-EQKGFEKGFGHESSSITG 679
E E + E L+ +V ++ D+ E E + K + E
Sbjct: 976 EILKRAETHENEPGPL-TVGDELLSQFKVANFSNMDEDDIELEPERNSKNW-EEIIPEDQ 1033
Query: 680 KRKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKRREYLPSEGNESASNSTGAEKKN 738
+R+ +E L ++ + + N + IS + G+R G++S S S K
Sbjct: 1034 RRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISERKRPKK 1093
Query: 739 LDMKNEIFPLASEGTSEDT---FGSAPKRLR--FERRNSESSDIQSVEKSE 784
I +G S+ F + K+ ER ++ + D + V+KSE
Sbjct: 1094 RGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSE 1144
Score = 46 (21.3 bits), Expect = 6.9e-109, Sum P(2) = 6.9e-109
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 740 DMKNEIFPLASEGTSED------TFGSAP-KRLRFERRNSE--SSDIQSVEKSEHK 786
+MK++ PL SE + ED T P K+++ ER + E D+ ++SE K
Sbjct: 1334 EMKSDSSPLPSEKSDEDDDKDEITSVKHPNKKIKTERDSEERPEPDVFIKKESEEK 1389
Score = 40 (19.1 bits), Expect = 3.0e-108, Sum P(2) = 3.0e-108
Identities = 20/95 (21%), Positives = 41/95 (43%)
Query: 715 KRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSES 774
KR+E + N+ SN +N D++ + +S D++ S ++ + +
Sbjct: 1575 KRQE--SQQNNDQNSNLNAQVIRNPDVERLKENTNHDDSSRDSYSSDRHLSQYHDHHKDR 1632
Query: 775 SDIQSVEKSE-HKGVQGSGLNG--HILTWNTHRKK 806
S +KS+ K S NG H W+ ++++
Sbjct: 1633 HQGDSYKKSDSRKRPYSSFSNGKDH-RDWDHYKQE 1666
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 1069 (381.4 bits), Expect = 8.8e-109, Sum P(2) = 8.8e-109
Identities = 278/711 (39%), Positives = 398/711 (55%)
Query: 105 EQPTLLQGGE---LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
+QP+ + G E LR YQL GL W+ + + ILADEMGLGKTIQTI+ + YL
Sbjct: 467 KQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 526
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR-EEFF---SERGRFN 217
+ GP ++V P + L +W E TWA + AVVY G + R +R E+ ++R +FN
Sbjct: 527 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 586
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
+L+T Y+++++D+ +L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+Q
Sbjct: 587 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 646
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
NSL+ELWSLL+F++P F+S E+FEE + ++ G +L H + PF+
Sbjct: 647 NSLKELWSLLHFIMPEKFSSWEDFEEE-HGKGREYGYASL------------HKELEPFL 693
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQ 396
LRR K +VEK LP K + IL+ +MSA QK YY+ + L G+ G + N+ M+
Sbjct: 694 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 753
Query: 397 LRKCCNHPYLFVGEYN--MWRKEE----IIRASGKFELLDRLLPKLRKSGHRVLLFSQMT 450
L+KCCNH YL N + K+E +IR+SGK LLD+LL +LR+ G+RVL+FSQM
Sbjct: 754 LKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMV 813
Query: 451 RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 510
R++DIL YLK F F RLDGS K E R L FNA S F FLLSTRAGGLG+NL
Sbjct: 814 RMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLA 873
Query: 511 TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 570
+ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ GS+EE ILERAK+KM +D
Sbjct: 874 SADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDH 933
Query: 571 KVIQ----AG--LFNT----TSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSD 620
VIQ G + +T +S+ +E L I++ G L + P E D
Sbjct: 934 LVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKE-PEGEEQEPQEMDID 992
Query: 621 EEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKE-EQKGFEKGFGHESSSITG 679
E E + E L+ +V ++ D+ E E + K + E
Sbjct: 993 EILKRAETHENEPGPL-TVGDELLSQFKVANFSNMDEDDIELEPERNSKNW-EEIIPEDQ 1050
Query: 680 KRKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKRREYLPSEGNESASNSTGAEKKN 738
+R+ +E L ++ + + N + IS + G+R G++S S S K
Sbjct: 1051 RRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISERKRPKK 1110
Query: 739 LDMKNEIFPLASEGTSEDT---FGSAPKRLR--FERRNSESSDIQSVEKSE 784
I +G S+ F + K+ ER ++ + D + V+KSE
Sbjct: 1111 RGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSE 1161
Score = 43 (20.2 bits), Expect = 8.8e-109, Sum P(2) = 8.8e-109
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 740 DMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESS 775
+MK++ PL SE + ED + + R+ +SS
Sbjct: 1351 EMKSDSSPLPSEKSDEDDDKLNESKSESKERSKKSS 1386
Score = 40 (19.1 bits), Expect = 1.8e-108, Sum P(2) = 1.8e-108
Identities = 20/95 (21%), Positives = 41/95 (43%)
Query: 715 KRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSES 774
KR+E + N+ SN +N D++ + +S D++ S ++ + +
Sbjct: 1504 KRQE--SQQNNDQNSNLNAQVIRNPDVERLKENTNHDDSSRDSYSSDRHLSQYHDHHKDR 1561
Query: 775 SDIQSVEKSE-HKGVQGSGLNG--HILTWNTHRKK 806
S +KS+ K S NG H W+ ++++
Sbjct: 1562 HQGDSYKKSDSRKRPYSSFSNGKDH-RDWDHYKQE 1595
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 1083 (386.3 bits), Expect = 9.8e-109, P = 9.8e-109
Identities = 268/661 (40%), Positives = 374/661 (56%)
Query: 105 EQPTLL--QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
+QP+ + + ELR YQLEGL W+ + N + ILADEMGLGKTIQTI+ ++YL
Sbjct: 474 KQPSYIGSENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQ 533
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF---SERGRFNV 218
+ GP ++V P + L +W EF WAP I VVY G R +RE E+ S+R +FN
Sbjct: 534 LYGPFLVVVPLSTLTSWQREFEVWAPEINVVVYIGDLMSRNMIREYEWIHSQSKRLKFNA 593
Query: 219 LITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 278
LIT Y+++++D+ L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+QN
Sbjct: 594 LITTYEILLKDKAVLGSISWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQN 653
Query: 279 SLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338
SL+ELWSLL+F++P F E+FEE D G+ + L H V+ PF+L
Sbjct: 654 SLKELWSLLHFIMPEKFEFWEDFEE-------DHGKGRENGYQSL------HKVLEPFLL 700
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQL 397
RR K +VEK LP K + IL+ +MSA QK YY+ + L GT G + N+ M+L
Sbjct: 701 RRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALSKGTRGSTSGFLNIVMEL 760
Query: 398 RKCCNHPYLFVGEYNMWRK------EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTR 451
+KCCNH YL R+ + +IR+SGK LLD+LL +LR G+RVL+FSQM R
Sbjct: 761 KKCCNHCYLIKPPEENERENGIETLQSLIRSSGKLILLDKLLTRLRDRGNRVLIFSQMVR 820
Query: 452 LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 511
++DIL YL + + F RLDGS K E R L FNA S F FLLSTRAGGLG+NL +
Sbjct: 821 MLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLAS 880
Query: 512 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 571
ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ G++EE I+ERAK+KM +D
Sbjct: 881 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHL 940
Query: 572 VIQ----AG---LFNTTSTAQDR---REMLKEIMRRGTSSLGTDVPSEREINRLAARSDE 621
VIQ G L N + + +E L I++ G L ++ E E DE
Sbjct: 941 VIQRMDTTGRTVLDNNSGRSNSNPFNKEELTAILKFGAEDLFKELEGE-ESEPQEMDIDE 999
Query: 622 EFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKE----EQKGFEKGFGHES-SS 676
L E + E L + +V +A + E QK ++ E
Sbjct: 1000 ILRLAETRENEVSTSAT-DELLSQFKKVANFATMEEEETELDERPQKDWDDIIPEEQRKK 1058
Query: 677 ITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEK 736
+ + ++KE+ L ++ + + Q S +R S G+ES ++ T EK
Sbjct: 1059 VEEEERQKELEEIYMLPRIR--SSTKKAQTNDSESDAETKRRLQRSSGSESETDDTDDEK 1116
Query: 737 K 737
+
Sbjct: 1117 R 1117
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 667 (239.9 bits), Expect = 9.9e-109, Sum P(2) = 9.9e-109
Identities = 142/387 (36%), Positives = 222/387 (57%)
Query: 31 QRQKDSKHVDGIEPLKDSEXXXXXXXASENGTPRDLHPEEXXXXXXXXXXXXXXLLEGQR 90
Q DS H + LK++E A D E E
Sbjct: 441 QEDYDSNHFKA-QALKNAENAYHIHQARTRSFDEDAK-ESRAAALRAADKSGSGFGESYS 498
Query: 91 QYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT 150
N +I + E+ QPT+ G +L+ YQL+G+ W+ +L+ +NGILADEMGLGKT+Q+
Sbjct: 499 LANPSIRAGED--IPQPTIFNG-KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQS 555
Query: 151 IALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 210
IAL+A+L E + + GP +I++P + L NW EF+ + P + Y G P +RK ++ +
Sbjct: 556 IALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKK-KKTLY 614
Query: 211 SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLL 270
++ F+V+IT Y L+++D +Y ++V+W YM++DE LK+ K + +Q + RLL
Sbjct: 615 TQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLL 674
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQLLIIRRL 329
LTGTPIQN++ ELW+LL+F++PT+F+S E F EWF+ + + + DE QL RL
Sbjct: 675 LTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL---SRL 731
Query: 330 HHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVG--LDTGTGKS 387
H +++PF+LRR K +VE L K ++++ C +++ QK+ YQ + + + L + G +
Sbjct: 732 HMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGST 791
Query: 388 K-------SLQNLSMQLRKCCNHPYLF 407
+ SL NL MQ RK CNHP LF
Sbjct: 792 QQAQNTTSSLMNLVMQFRKVCNHPELF 818
Score = 452 (164.2 bits), Expect = 9.9e-109, Sum P(2) = 9.9e-109
Identities = 102/234 (43%), Positives = 144/234 (61%)
Query: 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 475
KE +I SGK LD LL +L+ GHRVL++SQMTR++D+LE Y+ ++RLDGS+K
Sbjct: 1090 KESLITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1149
Query: 476 TEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAH 535
ER ++ F + F+FLLSTRAGGLG+NL ADTVI +DSDWNP +DQQA DRAH
Sbjct: 1150 ISERRDMVADFQTRND-IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1208
Query: 536 RIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIM 595
R+GQ K+V V+ L+ G+IEE IL+RAK+K I VI G F + KE++
Sbjct: 1209 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKP------KEVV 1262
Query: 596 RRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEV 649
S L D E+++ RL + ++ E +R++E Y + ++ E+
Sbjct: 1263 ----SLLLDDEELEKKL-RLRQEEKRQQEESNRVKERKRKREKYAEKKKKEDEL 1311
Score = 40 (19.1 bits), Expect = 2.8e-65, Sum P(2) = 2.8e-65
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 372 VTDVGRV-GLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLD 430
+TD G++ LD + KS Q + + + EY ++RK +R G ++ +
Sbjct: 1094 ITDSGKLYALDILLTRLKS-QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISE 1152
Query: 431 R 431
R
Sbjct: 1153 R 1153
Score = 39 (18.8 bits), Expect = 6.8e-38, Sum P(2) = 6.8e-38
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 382 TGTGKSKSLQNLSMQLRKCCNHPYLFVGE 410
+G G+S SL N S++ + P +F G+
Sbjct: 491 SGFGESYSLANPSIRAGEDIPQPTIFNGK 519
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 1083 (386.3 bits), Expect = 1.4e-108, P = 1.4e-108
Identities = 272/662 (41%), Positives = 378/662 (57%)
Query: 105 EQPTLLQGG--ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
+QP L G ELR YQLEGL W+ + + + ILADEMGLGKTIQTI+ ++YL
Sbjct: 474 KQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 533
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF---SERGRFNV 218
+ GP +IV P + L +W EF WAP I VVY G R +RE E+ ++R +FN
Sbjct: 534 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 593
Query: 219 LITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 278
LIT Y+++++D+ L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+QN
Sbjct: 594 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQN 653
Query: 279 SLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338
SL+ELWSLL+F++P F E+FEE D G+ + L H V+ PF+L
Sbjct: 654 SLKELWSLLHFIMPEKFEFWEDFEE-------DHGKGRENGYQSL------HKVLEPFLL 700
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQL 397
RR K +VEK LP K + IL+ +MSA QK YY+ + L GT G + N+ M+L
Sbjct: 701 RRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMEL 760
Query: 398 RKCCNHPYLFVGEYNMWRK--EEI----IRASGKFELLDRLLPKLRKSGHRVLLFSQMTR 451
+KCCNH YL R+ +EI IR+SGK LLD+LL +LR+ G+RVL+FSQM R
Sbjct: 761 KKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVR 820
Query: 452 LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 511
++DIL YL + + F RLDGS K E R L FNA S F FLLSTRAGGLG+NL +
Sbjct: 821 MLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLAS 880
Query: 512 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 571
ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ G++EE I+ERAK+KM +D
Sbjct: 881 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHL 940
Query: 572 VIQ----AG---LFNTTSTAQDR---REMLKEIMRRGTSSLGTDVPSEREINRLAARSDE 621
VIQ G L N + + +E L I++ G L ++ E E DE
Sbjct: 941 VIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGE-ESEPQEMDIDE 999
Query: 622 EFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQ---KGFEKGFGHES-SSI 677
L E + E + L+ +V +A + + E+ K +++ E +
Sbjct: 1000 ILRLAETRENE--VSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKV 1057
Query: 678 TGKRKRKEV--VYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAE 735
+ ++KE+ +Y KA N D S R +R S +ES ++ + +
Sbjct: 1058 EEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQR----SSASESETDESDDD 1113
Query: 736 KK 737
KK
Sbjct: 1114 KK 1115
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 601 (216.6 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 107/274 (39%), Positives = 175/274 (63%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
+QP GG +R YQ+EG++W+ L+ N +NGILADEMGLGKT+Q IA IA +++ +GV
Sbjct: 196 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQ-RGVP 254
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFN---VLIT 221
GP ++ P + LPNW+ EF + P I ++Y G ++R+ + + +G V++T
Sbjct: 255 GPFLVCGPLSTLPNWMAEFKRFTPEIPTLLYHGTREDRRKLVKNIHKRQGTLQIHPVVVT 314
Query: 222 HYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQ 281
+++ MRD+ L+ W Y+IVDEGHR+KN +C L + + + +LLLTGTP+QN+L
Sbjct: 315 SFEIAMRDQNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLS 374
Query: 282 ELWSLLNFLLPTIFNSVENFEEWFN-APFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340
ELWSLLNFLLP +F+ +++FE WF+ + + + E + ++ LH ++ PF+LRR
Sbjct: 375 ELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRR 434
Query: 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTD 374
K +V +P K +V++ + Q+++Y + +
Sbjct: 435 LKSDVALEVPPKREVVVYAPLCNKQEIFYTAIVN 468
Score = 492 (178.3 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 114/247 (46%), Positives = 153/247 (61%)
Query: 390 LQNLSMQLRKCCNHPYLF---VGEYNMWRK--EEIIRASGKFELLDRLLPKLRKSGHRVL 444
L+N+ M LRKCCNHPY+ + K EE++ SGKF +LDR+LP+L+K GH+VL
Sbjct: 543 LRNIMMLLRKCCNHPYMIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVL 602
Query: 445 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504
+FSQMT ++DIL Y L +F F RLDGS ER + FN D F+FL+STRAGG
Sbjct: 603 VFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFNT-DPDVFLFLVSTRAGG 661
Query: 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564
LG+NL ADTVII+DSDWNPQ D QA+DR HRIGQ K V V+ LV+ +I++ I+ERA
Sbjct: 662 LGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAA 721
Query: 565 KMGIDAKVI--------QAGLFNTTS--TAQDRREMLKEI-MRRGTSSLGTDVPSEREIN 613
K ++ +I Q+GL + + A++ E+LK R V S+ ++
Sbjct: 722 KRKLEKLIIHKNHFKGGQSGLSQSKNFLDAKELMELLKSRDYEREVKGSREKVISDEDLE 781
Query: 614 RLAARSD 620
L RSD
Sbjct: 782 LLLDRSD 788
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 664 (238.8 bits), Expect = 2.2e-108, Sum P(2) = 2.2e-108
Identities = 145/393 (36%), Positives = 224/393 (56%)
Query: 31 QRQKDSKHVDGIEPLKDSEXXXXXXXASENGTPRDLHPEEXXXXXXXXXXXXXXLLEGQR 90
Q DS H + LK++E A D E E
Sbjct: 448 QEDYDSNHFKA-QALKNAENAYHIHQARTRSFDEDAK-ESRAAALRAANKSGTGFGESYS 505
Query: 91 QYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT 150
N +I + E+ QPT+ G +L+ YQL+G+ W+ +L+ +NGILADEMGLGKT+Q+
Sbjct: 506 LANPSIRAGED--IPQPTIFNG-KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQS 562
Query: 151 IALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 210
IAL+A+L E + + GP +I++P + L NW EF+ + P + Y G P +RK +R F+
Sbjct: 563 IALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRR-FW 621
Query: 211 SER------GRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
S++ F+V+IT Y L+++D +Y ++V+W YM++DE LK+ K + +Q
Sbjct: 622 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 681
Query: 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQL 323
+ RLLLTGTPIQN++ ELW+LL+F++PT+F+S E F EWF+ + + + DE QL
Sbjct: 682 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 741
Query: 324 LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVG--LD 381
RLH +++PF+LRR K +VE L K ++++ C +++ QK+ YQ + + + L
Sbjct: 742 ---SRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQ 798
Query: 382 TGTGKSK-------SLQNLSMQLRKCCNHPYLF 407
+ G ++ SL NL MQ RK CNHP LF
Sbjct: 799 SSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELF 831
Score = 452 (164.2 bits), Expect = 2.2e-108, Sum P(2) = 2.2e-108
Identities = 102/234 (43%), Positives = 144/234 (61%)
Query: 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 475
KE +I SGK LD LL +L+ GHRVL++SQMTR++D+LE Y+ ++RLDGS+K
Sbjct: 1103 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1162
Query: 476 TEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAH 535
ER ++ F + F+FLLSTRAGGLG+NL ADTVI +DSDWNP +DQQA DRAH
Sbjct: 1163 ISERRDMVADFQTRND-IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1221
Query: 536 RIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIM 595
R+GQ K+V V+ L+ G+IEE IL+RAK+K I VI G F + KE++
Sbjct: 1222 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKP------KEVV 1275
Query: 596 RRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEV 649
S L D E+++ RL + ++ E +R++E Y + ++ E+
Sbjct: 1276 ----SLLLDDEELEKKL-RLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDEL 1324
Score = 49 (22.3 bits), Expect = 9.6e-39, Sum P(3) = 9.6e-39
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 291 LPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRR--LHHVIRPFILRRKKDEVEKY 348
L +I S E+ E ++ D G+ DEE+ L + R LH+++R + + KK KY
Sbjct: 126 LKSILLSDESSEADSHSEDNDEGEEEDDDEEEELSLSREDLHNMLR--LHKYKKLHQNKY 183
Score = 43 (20.2 bits), Expect = 9.6e-39, Sum P(3) = 9.6e-39
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 382 TGTGKSKSLQNLSMQLRKCCNHPYLFVGE 410
TG G+S SL N S++ + P +F G+
Sbjct: 498 TGFGESYSLANPSIRAGEDIPQPTIFNGK 526
Score = 41 (19.5 bits), Expect = 4.8e-65, Sum P(2) = 4.8e-65
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 372 VTDVGRV-GLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLD 430
+TD G++ LD + KS Q + + + EY ++RK +R G ++ +
Sbjct: 1107 ITDSGKLYALDVLLTRLKS-QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISE 1165
Query: 431 R 431
R
Sbjct: 1166 R 1166
Score = 38 (18.4 bits), Expect = 8.9e-38, Sum P(2) = 8.9e-38
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDE-----RKAMREEFFSERGRF---NVLIT 221
AP+ + +W+N S + P A ++ RP R +E ++ G+ +VL+T
Sbjct: 1064 APE-LAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLT 1121
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
Identities = 255/583 (43%), Positives = 347/583 (59%)
Query: 105 EQPTLLQGG--ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
+QP L G ELR YQLEGL W+ + + + ILADEMGLGKTIQTI+ ++YL
Sbjct: 474 KQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 533
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF---SERGRFNV 218
+ GP +IV P + L +W EF WAP I VVY G R +RE E+ ++R +FN
Sbjct: 534 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 593
Query: 219 LITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 278
LIT Y+++++D+ L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+QN
Sbjct: 594 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQN 653
Query: 279 SLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338
SL+ELWSLL+F++P F E+FEE D G+ + L H V+ PF+L
Sbjct: 654 SLKELWSLLHFIMPEKFEFWEDFEE-------DHGKGRENGYQSL------HKVLEPFLL 700
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQL 397
RR K +VEK LP K + IL+ +MSA QK YY+ + L GT G + N+ M+L
Sbjct: 701 RRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMEL 760
Query: 398 RKCCNHPYLFVGEYNMWRK--EEI----IRASGKFELLDRLLPKLRKSGHRVLLFSQMTR 451
+KCCNH YL R+ +EI IR+SGK LLD+LL +LR+ G+RVL+FSQM R
Sbjct: 761 KKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVR 820
Query: 452 LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 511
++DIL YL + + F RLDGS K E R L FNA S F FLLSTRAGGLG+NL +
Sbjct: 821 MLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLAS 880
Query: 512 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 571
ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ G++EE I+ERAK+KM +D
Sbjct: 881 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHL 940
Query: 572 VIQ----AG---LFNTTSTAQDR---REMLKEIMRRGTSSLGTDVPSEREINRLAARSDE 621
VIQ G L N + + +E L I++ G L ++ E E DE
Sbjct: 941 VIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGE-ESEPQEMDIDE 999
Query: 622 EFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
L E + E + L+ +V +A + + E++
Sbjct: 1000 ILRLAETRENE--VSTSATDELLSQFKVANFATMEDEEELEER 1040
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 664 (238.8 bits), Expect = 2.7e-108, Sum P(2) = 2.7e-108
Identities = 145/393 (36%), Positives = 224/393 (56%)
Query: 31 QRQKDSKHVDGIEPLKDSEXXXXXXXASENGTPRDLHPEEXXXXXXXXXXXXXXLLEGQR 90
Q DS H + LK++E A D E E
Sbjct: 439 QEDYDSNHFKA-QALKNAENAYHIHQARTRSFDEDAK-ESRAAALRAANKSGTGFGESYS 496
Query: 91 QYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT 150
N +I + E+ QPT+ G +L+ YQL+G+ W+ +L+ +NGILADEMGLGKT+Q+
Sbjct: 497 LANPSIRAGED--IPQPTIFNG-KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQS 553
Query: 151 IALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 210
IAL+A+L E + + GP +I++P + L NW EF+ + P + Y G P +RK +R F+
Sbjct: 554 IALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRR-FW 612
Query: 211 SER------GRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
S++ F+V+IT Y L+++D +Y ++V+W YM++DE LK+ K + +Q
Sbjct: 613 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 672
Query: 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQL 323
+ RLLLTGTPIQN++ ELW+LL+F++PT+F+S E F EWF+ + + + DE QL
Sbjct: 673 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 732
Query: 324 LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVG--LD 381
RLH +++PF+LRR K +VE L K ++++ C +++ QK+ YQ + + + L
Sbjct: 733 ---SRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQ 789
Query: 382 TGTGKSK-------SLQNLSMQLRKCCNHPYLF 407
+ G ++ SL NL MQ RK CNHP LF
Sbjct: 790 SSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELF 822
Score = 451 (163.8 bits), Expect = 2.7e-108, Sum P(2) = 2.7e-108
Identities = 104/235 (44%), Positives = 145/235 (61%)
Query: 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 475
KE +I SGK LD LL +L+ GHRVL++SQMTR++D+LE Y+ ++RLDGS+K
Sbjct: 1093 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1152
Query: 476 TEERGTLLKQF-NAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRA 534
ER ++ F N D F+FLLSTRAGGLG+NL ADTVI +DSDWNP +DQQA DRA
Sbjct: 1153 ISERRDMVADFQNRND--IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRA 1210
Query: 535 HRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEI 594
HR+GQ K+V V+ L+ G+IEE IL+RAK+K I VI G F + KE+
Sbjct: 1211 HRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKP------KEV 1264
Query: 595 MRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEV 649
+ S L D E+++ RL + ++ E +R++E Y + ++ E+
Sbjct: 1265 V----SLLLDDEELEKKL-RLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDEL 1314
Score = 43 (20.2 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 382 TGTGKSKSLQNLSMQLRKCCNHPYLFVGE 410
TG G+S SL N S++ + P +F G+
Sbjct: 489 TGFGESYSLANPSIRAGEDIPQPTIFNGK 517
Score = 41 (19.5 bits), Expect = 4.7e-65, Sum P(2) = 4.7e-65
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 372 VTDVGRV-GLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLD 430
+TD G++ LD + KS Q + + + EY ++RK +R G ++ +
Sbjct: 1097 ITDSGKLYALDVLLTRLKS-QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISE 1155
Query: 431 R 431
R
Sbjct: 1156 R 1156
Score = 38 (18.4 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDE-----RKAMREEFFSERGRF---NVLIT 221
AP+ + +W+N S + P A ++ RP R +E ++ G+ +VL+T
Sbjct: 1054 APE-LAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLT 1111
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 664 (238.8 bits), Expect = 2.7e-108, Sum P(2) = 2.7e-108
Identities = 145/393 (36%), Positives = 224/393 (56%)
Query: 31 QRQKDSKHVDGIEPLKDSEXXXXXXXASENGTPRDLHPEEXXXXXXXXXXXXXXLLEGQR 90
Q DS H + LK++E A D E E
Sbjct: 442 QEDYDSNHFKA-QALKNAENAYHIHQARTRSFDEDAK-ESRAAALRAANKSGTGFGESYS 499
Query: 91 QYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT 150
N +I + E+ QPT+ G +L+ YQL+G+ W+ +L+ +NGILADEMGLGKT+Q+
Sbjct: 500 LANPSIRAGED--IPQPTIFNG-KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQS 556
Query: 151 IALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 210
IAL+A+L E + + GP +I++P + L NW EF+ + P + Y G P +RK +R F+
Sbjct: 557 IALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRR-FW 615
Query: 211 SER------GRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
S++ F+V+IT Y L+++D +Y ++V+W YM++DE LK+ K + +Q
Sbjct: 616 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 675
Query: 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQL 323
+ RLLLTGTPIQN++ ELW+LL+F++PT+F+S E F EWF+ + + + DE QL
Sbjct: 676 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 735
Query: 324 LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVG--LD 381
RLH +++PF+LRR K +VE L K ++++ C +++ QK+ YQ + + + L
Sbjct: 736 ---SRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQ 792
Query: 382 TGTGKSK-------SLQNLSMQLRKCCNHPYLF 407
+ G ++ SL NL MQ RK CNHP LF
Sbjct: 793 SSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELF 825
Score = 451 (163.8 bits), Expect = 2.7e-108, Sum P(2) = 2.7e-108
Identities = 104/235 (44%), Positives = 145/235 (61%)
Query: 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 475
KE +I SGK LD LL +L+ GHRVL++SQMTR++D+LE Y+ ++RLDGS+K
Sbjct: 1097 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1156
Query: 476 TEERGTLLKQF-NAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRA 534
ER ++ F N D F+FLLSTRAGGLG+NL ADTVI +DSDWNP +DQQA DRA
Sbjct: 1157 ISERRDMVADFQNRND--IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRA 1214
Query: 535 HRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEI 594
HR+GQ K+V V+ L+ G+IEE IL+RAK+K I VI G F + KE+
Sbjct: 1215 HRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKP------KEV 1268
Query: 595 MRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEV 649
+ S L D E+++ RL + ++ E +R++E Y + ++ E+
Sbjct: 1269 V----SLLLDDEELEKKL-RLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDEL 1318
Score = 43 (20.2 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 382 TGTGKSKSLQNLSMQLRKCCNHPYLFVGE 410
TG G+S SL N S++ + P +F G+
Sbjct: 492 TGFGESYSLANPSIRAGEDIPQPTIFNGK 520
Score = 41 (19.5 bits), Expect = 4.7e-65, Sum P(2) = 4.7e-65
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 372 VTDVGRV-GLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLD 430
+TD G++ LD + KS Q + + + EY ++RK +R G ++ +
Sbjct: 1101 ITDSGKLYALDVLLTRLKS-QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISE 1159
Query: 431 R 431
R
Sbjct: 1160 R 1160
Score = 38 (18.4 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDE-----RKAMREEFFSERGRF---NVLIT 221
AP+ + +W+N S + P A ++ RP R +E ++ G+ +VL+T
Sbjct: 1058 APE-LAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLT 1115
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 664 (238.8 bits), Expect = 2.7e-108, Sum P(2) = 2.7e-108
Identities = 145/393 (36%), Positives = 224/393 (56%)
Query: 31 QRQKDSKHVDGIEPLKDSEXXXXXXXASENGTPRDLHPEEXXXXXXXXXXXXXXLLEGQR 90
Q DS H + LK++E A D E E
Sbjct: 448 QEDYDSNHFKA-QALKNAENAYHIHQARTRSFDEDAK-ESRAAALRAANKSGTGFGESYS 505
Query: 91 QYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT 150
N +I + E+ QPT+ G +L+ YQL+G+ W+ +L+ +NGILADEMGLGKT+Q+
Sbjct: 506 LANPSIRAGED--IPQPTIFNG-KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQS 562
Query: 151 IALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 210
IAL+A+L E + + GP +I++P + L NW EF+ + P + Y G P +RK +R F+
Sbjct: 563 IALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRR-FW 621
Query: 211 SER------GRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
S++ F+V+IT Y L+++D +Y ++V+W YM++DE LK+ K + +Q
Sbjct: 622 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 681
Query: 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQL 323
+ RLLLTGTPIQN++ ELW+LL+F++PT+F+S E F EWF+ + + + DE QL
Sbjct: 682 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 741
Query: 324 LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVG--LD 381
RLH +++PF+LRR K +VE L K ++++ C +++ QK+ YQ + + + L
Sbjct: 742 ---SRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQ 798
Query: 382 TGTGKSK-------SLQNLSMQLRKCCNHPYLF 407
+ G ++ SL NL MQ RK CNHP LF
Sbjct: 799 SSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELF 831
Score = 451 (163.8 bits), Expect = 2.7e-108, Sum P(2) = 2.7e-108
Identities = 104/235 (44%), Positives = 145/235 (61%)
Query: 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 475
KE +I SGK LD LL +L+ GHRVL++SQMTR++D+LE Y+ ++RLDGS+K
Sbjct: 1103 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1162
Query: 476 TEERGTLLKQF-NAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRA 534
ER ++ F N D F+FLLSTRAGGLG+NL ADTVI +DSDWNP +DQQA DRA
Sbjct: 1163 ISERRDMVADFQNRND--IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRA 1220
Query: 535 HRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEI 594
HR+GQ K+V V+ L+ G+IEE IL+RAK+K I VI G F + KE+
Sbjct: 1221 HRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKP------KEV 1274
Query: 595 MRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEV 649
+ S L D E+++ RL + ++ E +R++E Y + ++ E+
Sbjct: 1275 V----SLLLDDEELEKKL-RLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDEL 1324
Score = 43 (20.2 bits), Expect = 2.2e-37, Sum P(3) = 2.2e-37
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 382 TGTGKSKSLQNLSMQLRKCCNHPYLFVGE 410
TG G+S SL N S++ + P +F G+
Sbjct: 498 TGFGESYSLANPSIRAGEDIPQPTIFNGK 526
Score = 41 (19.5 bits), Expect = 4.8e-65, Sum P(2) = 4.8e-65
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 372 VTDVGRV-GLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLD 430
+TD G++ LD + KS Q + + + EY ++RK +R G ++ +
Sbjct: 1107 ITDSGKLYALDVLLTRLKS-QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISE 1165
Query: 431 R 431
R
Sbjct: 1166 R 1166
Score = 39 (18.8 bits), Expect = 9.1e-38, Sum P(2) = 9.1e-38
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDE-----RKAMREEFFSERGRF---NVLIT 221
AP+ + +W+N S + P A ++ RP R +E ++ G+ +VL+T
Sbjct: 1064 APELAV-DWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLT 1121
Score = 37 (18.1 bits), Expect = 2.2e-37, Sum P(3) = 2.2e-37
Identities = 17/76 (22%), Positives = 30/76 (39%)
Query: 196 DGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECA 255
D + ++ + E+ E N+ ++R +Y K Q Y E + + +
Sbjct: 139 DSQSEDNEEEEEDDEEEEEELNLSREELHNMLRLHKYKKLHQNKYSKDKELQQYQYYSAG 198
Query: 256 LAKTISG-YQIQRRLL 270
L T Y+ QR LL
Sbjct: 199 LLSTYDPFYEQQRHLL 214
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 653 (234.9 bits), Expect = 2.9e-108, Sum P(3) = 2.9e-108
Identities = 132/306 (43%), Positives = 192/306 (62%)
Query: 104 TEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
T+ P LL+ LR YQ GL W+++++ LNGILADEMGLGKTI TIAL+A+L +KG+
Sbjct: 526 TKLPFLLKHS-LREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGI 584
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+IV P +V+ NW EF W P+ + Y G ERK R+ + + F+V IT Y
Sbjct: 585 WGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWM-KLNSFHVCITTY 643
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
L+++D + K+ +W Y+I+DE H +KN + +T+ + +RR+LLTGTP+QN L EL
Sbjct: 644 RLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMEL 703
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343
WSL++FL+P +F S + F++WF P G V ++ +I RLH+V+RPF+LRR K
Sbjct: 704 WSLMHFLMPHVFQSHQEFKDWFCNPIA--GMVEGQEKINKEVIDRLHNVLRPFLLRRLKR 761
Query: 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 403
+VEK LP K + ++ C +S Q+ Y+ +G + ++ MQLRK CNH
Sbjct: 762 DVEKQLPSKHEHVIFCRLSKRQRNLYEDFIASTETQATLTSGSFFGMISIIMQLRKVCNH 821
Query: 404 PYLFVG 409
P LF G
Sbjct: 822 PDLFEG 827
Score = 449 (163.1 bits), Expect = 2.9e-108, Sum P(3) = 2.9e-108
Identities = 104/238 (43%), Positives = 149/238 (62%)
Query: 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 483
GK + L LL KL+ GHR L+F+QMT+++D+LE ++ L + ++RLDGST EER TL+
Sbjct: 1075 GKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLM 1134
Query: 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543
++FN + F+F+LSTR+GG+G+NL ADTVI +DSDWNP MDQQA+DR HRIGQ +EV
Sbjct: 1135 QRFNT-NPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREV 1193
Query: 544 RVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQ-DRREML---KEIMRRG- 598
++ L+S +IEE IL++A QK +D VIQ G +NT + D E+ K + +
Sbjct: 1194 HIYRLISESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKKLDPMELFSGHKALTTKDE 1253
Query: 599 --TSS-LGTDVP-SEREINR-LAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPE 651
TS G D+P S ++ L DE ++ K E+ +N + E E PE
Sbjct: 1254 KETSKHCGADIPLSNADVEAALKQAEDEADYMALKRVEQEEAVDN-QEFTEEPVERPE 1310
Score = 46 (21.3 bits), Expect = 2.9e-108, Sum P(3) = 2.9e-108
Identities = 23/124 (18%), Positives = 49/124 (39%)
Query: 625 LFEKMDEERRQKE--NYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRK 682
L E ++ E R++E ++ +E K+ +K K S + K
Sbjct: 1473 LMEDLENEAREREAAEVAEMVLTQNESAH-VLKPKKKKKAKKAKYKSLKKGSLAAESKHV 1531
Query: 683 RKEVVYADTLSD----LQWMKAVENGQ--DISKLSTRGKRREYLPSEGNESASNSTGAE- 735
+ V D+ D ++ + ++ +S++ +GK+R+ + E S +
Sbjct: 1532 KSVVKIEDSTDDDNEEFGYVSSSDSDMVTPLSRMHMKGKKRDLIVDTDEEKTSKKKAKKH 1591
Query: 736 KKNL 739
KK+L
Sbjct: 1592 KKSL 1595
Score = 40 (19.1 bits), Expect = 1.2e-107, Sum P(3) = 1.2e-107
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 696 QWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTG 733
Q+M +V + QD+++ +G + L + ESA +G
Sbjct: 1811 QFMGSVNHTQDLARKPWQGMKVTSLSRKLLESALQDSG 1848
Score = 39 (18.8 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 599 TSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPD 658
TSS D ++ ++AA + + + + R + Y R +E + P +A +
Sbjct: 1356 TSSQEDDTDVLDDVKQMAAAAADAGQAISSFENQLRPIDRYAIRFLELWD-PIIVEAAME 1414
Query: 659 NKEEQKGFEK 668
N + GFE+
Sbjct: 1415 N---EAGFEE 1421
Score = 38 (18.4 bits), Expect = 4.9e-37, Sum P(3) = 4.9e-37
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 188 PSIAAVVYDGR--PD-ERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKK 235
P I G+ PD E +A R++ TH+D ++ + +L K
Sbjct: 10 PDIVMASKSGKSKPDNESRAKRQKTLEAPKEPRRPKTHWDHVLEEMAWLSK 60
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 661 (237.7 bits), Expect = 4.4e-108, Sum P(2) = 4.4e-108
Identities = 145/393 (36%), Positives = 223/393 (56%)
Query: 31 QRQKDSKHVDGIEPLKDSEXXXXXXXASENGTPRDLHPEEXXXXXXXXXXXXXXLLEGQR 90
Q DS H + LK++E A D E E
Sbjct: 441 QEDYDSNHFKA-QALKNAENAYHIHQARTRSFDEDAK-ESRAAALRAADKSGSGFGESYS 498
Query: 91 QYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT 150
N +I + E+ QPT+ G +L+ YQL+G+ W+ +L+ +NGILADEMGLGKT+Q+
Sbjct: 499 LANPSIRAGED--IPQPTIFNG-KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQS 555
Query: 151 IALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 210
IAL+A+L E + + GP +I++P + L NW EF+ + P + Y G P +RK +R F+
Sbjct: 556 IALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRR-FW 614
Query: 211 SER------GRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
S++ F+V+IT Y L+++D +Y ++V+W YM++DE LK+ K + +Q
Sbjct: 615 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 674
Query: 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQL 323
+ RLLLTGTPIQN++ ELW+LL+F++PT+F+S E F EWF+ + + + DE QL
Sbjct: 675 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 734
Query: 324 LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVG--LD 381
RLH +++PF+LRR K +VE L K +++ C +++ QK+ YQ + + + L
Sbjct: 735 ---SRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQKLLYQALKNKISIEDLLQ 791
Query: 382 TGTGKSK-------SLQNLSMQLRKCCNHPYLF 407
+ G ++ SL NL MQ RK CNHP LF
Sbjct: 792 SSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELF 824
Score = 452 (164.2 bits), Expect = 4.4e-108, Sum P(2) = 4.4e-108
Identities = 102/234 (43%), Positives = 144/234 (61%)
Query: 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 475
KE +I SGK LD LL +L+ GHRVL++SQMTR++D+LE Y+ ++RLDGS+K
Sbjct: 1096 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1155
Query: 476 TEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAH 535
ER ++ F + F+FLLSTRAGGLG+NL ADTVI +DSDWNP +DQQA DRAH
Sbjct: 1156 ISERRDMVADFQTRND-IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1214
Query: 536 RIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIM 595
R+GQ K+V V+ L+ G+IEE IL+RAK+K I VI G F + KE++
Sbjct: 1215 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKP------KEVV 1268
Query: 596 RRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEV 649
S L D E+++ RL + ++ E +R++E Y + ++ E+
Sbjct: 1269 ----SLLLDDEELEKKL-RLRQEEKRQQEESNRVKERKRKREKYAEKKKKEDEL 1317
Score = 41 (19.5 bits), Expect = 9.8e-65, Sum P(2) = 9.8e-65
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 372 VTDVGRV-GLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLD 430
+TD G++ LD + KS Q + + + EY ++RK +R G ++ +
Sbjct: 1100 ITDSGKLYALDVLLTRLKS-QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISE 1158
Query: 431 R 431
R
Sbjct: 1159 R 1159
Score = 39 (18.8 bits), Expect = 6.9e-38, Sum P(2) = 6.9e-38
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 382 TGTGKSKSLQNLSMQLRKCCNHPYLFVGE 410
+G G+S SL N S++ + P +F G+
Sbjct: 491 SGFGESYSLANPSIRAGEDIPQPTIFNGK 519
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 659 (237.0 bits), Expect = 7.4e-108, Sum P(2) = 7.4e-108
Identities = 145/395 (36%), Positives = 226/395 (57%)
Query: 31 QRQKDSKHVDGIEPLKDSEXXXXXXXASENGTPRDLHPEEXXXXXXXXXXXXXXLLEGQR 90
Q DS + + LK++E A D E E
Sbjct: 444 QEDYDSNYYKA-QALKNAEDAYQIHQARTRSFDEDAK-ESRAAALRAANKSGTGFGESYS 501
Query: 91 QYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT 150
N +I + E+ QPT+ G +L+ YQL+G+ W+ +L+ +NGILADEMGLGKT+Q+
Sbjct: 502 LANPSIRAGED--IPQPTIFNG-KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQS 558
Query: 151 IALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 210
IAL+A+L E + + GP +I++P + L NW EF+ + P + Y G P +RK +R+ F+
Sbjct: 559 IALLAHLAERENIWGPFLIISPASTLNNWHQEFARFVPKFKVLPYWGNPHDRKVIRK-FW 617
Query: 211 SER------GRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
S++ F+V+IT Y L+++D +Y ++V+W YM++DE LK+ K + +Q
Sbjct: 618 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 677
Query: 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALTDEEQL 323
+ RLLLTGTPIQN++ ELW+LL+F++PT+F+S E F EWF+ + + + DE QL
Sbjct: 678 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 737
Query: 324 LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT- 382
RLH +++PF+LRR K +VE L K ++++ C ++ QK+ YQ + + ++ +D
Sbjct: 738 ---SRLHMILKPFMLRRIKKDVENELSDKIEILMYCQQTSRQKLLYQALKN--KISIDDL 792
Query: 383 -----GTGK-----SKSLQNLSMQLRKCCNHPYLF 407
GT + + SL NL MQ RK CNHP LF
Sbjct: 793 LQSSMGTTQQAQTTTSSLMNLVMQFRKVCNHPELF 827
Score = 452 (164.2 bits), Expect = 7.4e-108, Sum P(2) = 7.4e-108
Identities = 105/237 (44%), Positives = 146/237 (61%)
Query: 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 475
KE +I SGK LD LL +L+ GHRVL++SQMTR++D+LE Y+ ++RLDGS+K
Sbjct: 1101 KESLITDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1160
Query: 476 TEERGTLLKQF-NAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRA 534
ER ++ F N D F+FLLSTRAGGLG+NL ADTVI +DSDWNP +DQQA DRA
Sbjct: 1161 ISERRDMVADFQNRND--IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRA 1218
Query: 535 HRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEI 594
HR+GQ K+V V+ L+ G+IEE IL+RAK+K I VI G F + KE+
Sbjct: 1219 HRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKP------KEV 1272
Query: 595 MRRGTSSLGTDVPSEREINRLAA--RSDEEFWLFEKMDEERRQKENYRSRLMEDHEV 649
+ S L D E+++ + R EE ++ E +R++E Y + ++ E+
Sbjct: 1273 V----SLLLDDEELEKKLRQRQEEKRQQEET---NRVKERKRKREKYAEKKKKEDEL 1322
Score = 43 (20.2 bits), Expect = 1.3e-37, Sum P(3) = 1.3e-37
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 382 TGTGKSKSLQNLSMQLRKCCNHPYLFVGE 410
TG G+S SL N S++ + P +F G+
Sbjct: 494 TGFGESYSLANPSIRAGEDIPQPTIFNGK 522
Score = 40 (19.1 bits), Expect = 2.1e-64, Sum P(2) = 2.1e-64
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 372 VTDVGRV-GLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLD 430
+TD G++ LD + KS Q + + + EY ++RK +R G ++ +
Sbjct: 1105 ITDSGKLHALDLLLTRLKS-QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISE 1163
Query: 431 R 431
R
Sbjct: 1164 R 1164
Score = 38 (18.4 bits), Expect = 1.3e-37, Sum P(3) = 1.3e-37
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 331 HVIRPFILRRKKDEVEKYLPGKSQVILK 358
H++ P ++KK + EK L GK + + K
Sbjct: 208 HLLGP---KKKKFKEEKKLKGKLKKVKK 232
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 1074 (383.1 bits), Expect = 1.2e-107, P = 1.2e-107
Identities = 269/662 (40%), Positives = 378/662 (57%)
Query: 105 EQPTLLQGG--ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
+QP L G ELR YQLEGL W+ + + + ILADEMGLGKTIQTI+ ++YL
Sbjct: 454 KQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQ 513
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF---SERGRFNV 218
+ GP +IV P + L +W EF WAP I VVY G R +RE E+ ++R +FN
Sbjct: 514 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 573
Query: 219 LITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 278
LIT Y+++++D+ L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+QN
Sbjct: 574 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQN 633
Query: 279 SLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338
SL+ELWSLL+F++P F E+FEE D G+ + L H V+ PF+L
Sbjct: 634 SLKELWSLLHFIMPEKFEFWEDFEE-------DHGKGRENGYQSL------HKVLEPFLL 680
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQL 397
RR K +VEK LP K + IL+ +MSA QK YY+ + L GT G + N+ M+L
Sbjct: 681 RRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMEL 740
Query: 398 RKCCNHPYLFVGEYNMWRK--EEI----IRASGKFELLDRLLPKLRKSGHRVLLFSQMTR 451
+KCCNH +L R+ +E+ IR+SGK LLD+LL +LR+ G+RVL+FSQM R
Sbjct: 741 KKCCNHCHLIKPPEENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVR 800
Query: 452 LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 511
++DIL YL + + F RLDGS K E R L FNA S F FLLSTRAGGLG+NL +
Sbjct: 801 MLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLAS 860
Query: 512 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 571
ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ G++EE I+ERAK+KM +D
Sbjct: 861 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHL 920
Query: 572 VIQ----AG---LFNTTSTAQDR---REMLKEIMRRGTSSLGTDVPSEREINRLAARSDE 621
VIQ G L N + + +E L I++ G L ++ E E DE
Sbjct: 921 VIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGE-ESEPQEMDIDE 979
Query: 622 EFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQ---KGFEKGFGHES-SSI 677
L E + E + L+ +V +A + + ++ K +++ E +
Sbjct: 980 ILRLAETRENE--VSTSATDELLSQFKVANFATMEDEEELDERPHKDWDEIIPEEQRKKV 1037
Query: 678 TGKRKRKEV--VYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAE 735
+ ++KE+ +Y KA N D S R +R S +ES ++ + +
Sbjct: 1038 EEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQR----SSASESETDDSDDD 1093
Query: 736 KK 737
KK
Sbjct: 1094 KK 1095
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 1072 (382.4 bits), Expect = 2.0e-107, P = 2.0e-107
Identities = 278/711 (39%), Positives = 399/711 (56%)
Query: 105 EQPTLL---QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
+QP+ + +G ELR YQL GL W+ + + ILADEMGLGKTIQTI+ + YL
Sbjct: 480 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 539
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR-EEFF---SERGRFN 217
+ GP ++V P + L +W E TWA + AVVY G + R +R E+ ++R +FN
Sbjct: 540 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 599
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
+L+T Y+++++D+ +L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+Q
Sbjct: 600 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 659
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
NSL+ELWSLL+F++P F+S E+FEE + ++ G +L H + PF+
Sbjct: 660 NSLKELWSLLHFIMPEKFSSWEDFEEE-HGKGREYGYASL------------HKELEPFL 706
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQ 396
LRR K +VEK LP K + IL+ +MSA QK YY+ + L G+ G + N+ M+
Sbjct: 707 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 766
Query: 397 LRKCCNHPYLFVGEYN--MWRKEE----IIRASGKFELLDRLLPKLRKSGHRVLLFSQMT 450
L+KCCNH YL N + K+E +IR+SGK LLD+LL +LR+ G+RVL+FSQM
Sbjct: 767 LKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMV 826
Query: 451 RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 510
R++DIL YLK F F RLDGS K E R L FNA S F FLLSTRAGGLG+NL
Sbjct: 827 RMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLA 886
Query: 511 TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 570
+ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ GS+EE ILERAK+KM +D
Sbjct: 887 SADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDH 946
Query: 571 KVIQ----AG--LFNT----TSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSD 620
VIQ G + +T +S+ +E L I++ G L + P E D
Sbjct: 947 LVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKE-PEGEEQEPQEMDID 1005
Query: 621 EEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKE-EQKGFEKGFGHESSSITG 679
E E + E L+ +V ++ D+ E E + K + E
Sbjct: 1006 EILKRAETHENEAGPL-TVGDELLSQFKVANFSNMDEDDIELEPERNSKNW-EEIIPEDQ 1063
Query: 680 KRKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKRREYLPSEGNESASNSTGAEKKN 738
+R+ +E L ++ + + N + IS + G+R G++S S S K
Sbjct: 1064 RRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISERKRPKK 1123
Query: 739 LDMKNEIFPLASEGTSEDT---FGSAPKRLR--FERRNSESSDIQSVEKSE 784
I +G S+ F + K+ ER ++ + D + V+KSE
Sbjct: 1124 RGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSE 1174
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 1005 (358.8 bits), Expect = 6.5e-106, Sum P(2) = 6.5e-106
Identities = 233/567 (41%), Positives = 344/567 (60%)
Query: 115 LRAYQLEGLQWMLSLFNNNLNG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
LR YQL+G++W LSL N G IL DEMGLGKT QTI+L+AY + + GP +++ P
Sbjct: 35 LRPYQLDGVKW-LSLCMKNQQGCILGDEMGLGKTCQTISLLAYARGSLKMNGPFLVLCPL 93
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL 233
AVL NW E + PS++ + Y G ++R +++ S+ RF+VL+T Y++ ++D +YL
Sbjct: 94 AVLENWRQELERFCPSLSVICYTGDKEKRAELQQNLKSDP-RFHVLLTTYEMCLKDARYL 152
Query: 234 KKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPT 293
K +W ++VDE HRLKN E L +T+ + + R+LLTGTPIQN+LQE++SLL F+ P+
Sbjct: 153 KSWKWKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVYSLLTFIQPS 212
Query: 294 IFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKS 353
+F E E++ NA + + AL DE LH V++PF+LRR K EV LP K+
Sbjct: 213 VFLP-EAVEDFVNAYADIQTEPALVDE--------LHQVLQPFLLRRVKAEVAAELPKKT 263
Query: 354 QVILKCDMSAWQKVYYQQVT--DVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVG-E 410
++++ +SA QK YY+ + D+ D T K++ L N+ MQLRKC +HPYLF G E
Sbjct: 264 ELVVFHGLSALQKRYYKAILMRDLDAFRTDQST-KTRLL-NVLMQLRKCVDHPYLFDGVE 321
Query: 411 YNMWRK-EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLR 469
+ E ++ ASGK LLD +L L++ GH VLLFSQMTR++DIL+ YL+ + + R
Sbjct: 322 PEPFEMGEHLVEASGKLSLLDSMLAYLQEGGHHVLLFSQMTRMLDILQDYLEYRGYSYER 381
Query: 470 LDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQ 529
LDGS + EER +K F+ D F+FLLST+AGG+G+NL ADTVI D D+NPQ D Q
Sbjct: 382 LDGSVRGEERNLAIKNFSTKD--VFIFLLSTKAGGVGMNLTAADTVIFVDGDFNPQNDLQ 439
Query: 530 AEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRRE 589
A RAHRIGQ + V+V L+ +IEE+I RA K+ + VI+ G F+ AQ
Sbjct: 440 AAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIEEGRFSLLDQAQSAAS 499
Query: 590 --MLKEIMRRGTSSL-GTDVPSEREINR--LAARSDEEFWLFE----KMDEERRQKENYR 640
L EI++ G L ++ S ++++ + +S + WL + K++E +++
Sbjct: 500 GLQLSEILKFGVDKLLSSEESSVQDVDLQLILGQSRDGQWLTDEEHAKLNESNEEEDEDM 559
Query: 641 SRLMEDHEVPEWAYSAPDNKEEQKGFE 667
+ YS + E++K FE
Sbjct: 560 EGQNHMYYFEGKDYSKDPSAEDEKTFE 586
Score = 63 (27.2 bits), Expect = 6.5e-106, Sum P(2) = 6.5e-106
Identities = 25/107 (23%), Positives = 48/107 (44%)
Query: 705 QDISKLSTRGKRRE--YLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAP 762
QD+ G+ R+ +L E + + S E ++++ +N ++ + S+D
Sbjct: 523 QDVDLQLILGQSRDGQWLTDEEHAKLNESNEEEDEDMEGQNHMYYFEGKDYSKDPSAEDE 582
Query: 763 K--RLRFERRNSESSDIQSVEKSEHKGVQGSGLNGHILTWNTHRKKR 807
K L E++ +E D + E + G L+G ++ N RKKR
Sbjct: 583 KTFELLLEKQFAEMEDAEK-EGRALRNKAGVSLSGPLI--NPARKKR 626
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 1032 (368.3 bits), Expect = 1.4e-105, Sum P(2) = 1.4e-105
Identities = 253/673 (37%), Positives = 382/673 (56%)
Query: 101 EKVTEQPTLLQ-GGE----LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA 155
EK P L+ GE LR YQLEGL WM+ + + ILADEMGLGKTIQ+I+L+A
Sbjct: 386 EKFESMPDFLKTDGESTHKLRDYQLEGLNWMVYAWCKGNSSILADEMGLGKTIQSISLLA 445
Query: 156 YLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF---S 211
L + GP+++V P + + W EF+ WAP + VVY G R +R+ E+F +
Sbjct: 446 SLFHRYDLAGPYLVVVPLSTMAAWQKEFAQWAPEMNLVVYMGDVVSRDMIRQYEWFVGGT 505
Query: 212 ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLL 271
++ + N ++T Y+++++D+ +L + W ++VDE HRLKN E L K+++ ++ +LL+
Sbjct: 506 KKMKINAILTTYEILLKDKAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLI 565
Query: 272 TGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHH 331
TGTP+QNSL+ELW+LL+F++P F+ E FE N +G I LH
Sbjct: 566 TGTPLQNSLKELWALLHFIMPEKFDCWEEFETAHNES-NHKG------------ISALHK 612
Query: 332 VIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSL 390
+ PF+LRR K +VEK LP K++ IL+ DM+A QK +Y+ + L G G
Sbjct: 613 KLEPFLLRRVKKDVEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYRELSKGVKGSINGF 672
Query: 391 QNLSMQLRKCCNHPYLFVGEYN------MWRKEEIIRASGKFELLDRLLPKLRKSGHRVL 444
NL M+L+KCCNH L +Y+ R ++++++SGK LLD+LL +L+ GHRVL
Sbjct: 673 VNLVMELKKCCNHASL-TRQYDHIYDDAQGRLQQLLKSSGKLILLDKLLCRLKDKGHRVL 731
Query: 445 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504
+FSQM ++DIL+ YL+L F RLDGS + + R L +NAP S F FLLSTRAGG
Sbjct: 732 IFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQALDHYNAPGSTDFAFLLSTRAGG 791
Query: 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564
LG+NL TADTVIIFDSDWNPQ D QA RAHRIGQ K V ++ LV+ GS+EE I+ERAK+
Sbjct: 792 LGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERAKR 851
Query: 565 KMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSER-EINRLAARSDEEF 623
K+ +D VIQ +TT K ++ + ++ G+ VP ++ E++ + E
Sbjct: 852 KLVLDHLVIQR--MDTTG---------KTVLSKNATASGS-VPFDKQELSAILKFGAVE- 898
Query: 624 WLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFE-KGFG-HESSSITGKR 681
LF++ + E ++ E R++ E E E F+ F E I
Sbjct: 899 -LFKEKEGEEQEPEVDIDRILMGAETREAEEEVMKENELLSSFKYANFAIDEEKDIAAAT 957
Query: 682 KRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREY-LPS-----EGNESAS-NSTGA 734
+ + D + E +++++++ ++R+ +P +G++ + TG
Sbjct: 958 DEWAAIIPE--EDRNRILEEERMKELAEMNLAPRQRKQPIPQVVEDDDGDDDEEEDDTGK 1015
Query: 735 EKKNLDMKNEIFP 747
+KK + N P
Sbjct: 1016 KKKKKAVGNFTIP 1028
Score = 38 (18.4 bits), Expect = 1.4e-105, Sum P(2) = 1.4e-105
Identities = 15/75 (20%), Positives = 24/75 (32%)
Query: 27 GAAVQRQKDSKHVDGIEPLKDSEXXXXXXXASENGT---PRDLHPEEXXXXXXXXXXXXX 83
G + D K P S+ ASEN + P + P++
Sbjct: 31 GNSTSEDNDEKEKAADSPESSSDQSDDSDDASENSSSSEPDEPAPKKKNNNNRGMDAETR 90
Query: 84 XLLEGQRQYNSAIHS 98
LLE + + + S
Sbjct: 91 KLLENENYFRRSKRS 105
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 658 (236.7 bits), Expect = 1.7e-105, Sum P(3) = 1.7e-105
Identities = 136/305 (44%), Positives = 188/305 (61%)
Query: 103 VTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
VT P LL+ LR YQ GL W++++ LNGILADEMGLGKTIQTIAL+A+L KG
Sbjct: 903 VTPVPFLLKHS-LREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAHLACAKG 961
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITH 222
GPH+IV P +V+ NW EF W P + Y G ERK R + ++ F+V IT
Sbjct: 962 NWGPHLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKLKRVGW-TKPNAFHVCITS 1020
Query: 223 YDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQE 282
Y L+++D+Q ++ +W Y+I+DE +KN + + + + +RRLLLTGTP+QN L E
Sbjct: 1021 YKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLME 1080
Query: 283 LWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 342
LWSL++FL+P +F+S F+EWF+ P G + E +I RLH VIRPF+LRR K
Sbjct: 1081 LWSLMHFLMPYVFSSHREFKEWFSNPMT--GMIEGNMEYNETLITRLHKVIRPFLLRRLK 1138
Query: 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
EVEK +P K + ++ C +S Q+ Y+ + TG S+ N+ MQLRK CN
Sbjct: 1139 KEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSRAKTRETLQTGNLLSVINVLMQLRKVCN 1198
Query: 403 HPYLF 407
HP +F
Sbjct: 1199 HPNMF 1203
Score = 428 (155.7 bits), Expect = 1.7e-105, Sum P(3) = 1.7e-105
Identities = 82/158 (51%), Positives = 116/158 (73%)
Query: 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 483
GK + +DRLL +L+ +GHRVL+F+QMT+++D+LE +L + +LRLDGST+ E+R L+
Sbjct: 1658 GKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILM 1717
Query: 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543
++FN D F F+LSTR+GG+G+NL ADTVI +DSDWNP MD QA+DR HRIGQ ++V
Sbjct: 1718 ERFNG-DKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDV 1776
Query: 544 RVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTT 581
++ LVS +IE IL++A QK + I+ G F TT
Sbjct: 1777 HIYRLVSERTIEVNILKKANQKRMLSDMAIEGGNFTTT 1814
Score = 44 (20.5 bits), Expect = 1.7e-105, Sum P(3) = 1.7e-105
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 609 EREINRLAARSDEEFWLFEKMDEE------RRQKEN--YRSR-LMEDHEVPEWAYSAP-- 657
E E NRLAA EE L ++ + E R+ N + SR ME ++P W P
Sbjct: 1971 EWEANRLAAMHKEEELLKQETEAEEMLTYSRKDSSNQVWISRNTME--QMPMWCPPTPPQ 2028
Query: 658 DNKEE 662
DN +
Sbjct: 2029 DNDND 2033
Score = 39 (18.8 bits), Expect = 1.2e-64, Sum P(3) = 1.2e-64
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 526 MDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM 566
M+Q +D + + + + R+ ++ ++E KQ +
Sbjct: 1827 MEQSEQDESSQEKSENKDRIVATTTLSDTPSTVVETEKQSL 1867
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 1046 (373.3 bits), Expect = 2.1e-105, Sum P(2) = 2.1e-105
Identities = 274/711 (38%), Positives = 395/711 (55%)
Query: 105 EQPTLL---QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
+QP+ + +G ELR YQL GL W+ + + ILADEMGLGKTIQTI+ + YL
Sbjct: 462 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 521
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR-EEFF---SERGRFN 217
+ GP ++V P + L +W E TWA + AVVY G + R +R E+ ++R +FN
Sbjct: 522 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 581
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
+L+T Y+++++D+ +L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+Q
Sbjct: 582 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 641
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
NSL+ELWSLL+F++P F+S E+FEE + ++ G +L H + PF+
Sbjct: 642 NSLKELWSLLHFIMPEKFSSWEDFEEE-HGKGREYGYASL------------HKELEPFL 688
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQ 396
LRR K +VEK LP K + IL+ +MSA QK YY+ + L G+ G + N+ M+
Sbjct: 689 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 748
Query: 397 LRKCCNHPYLFVGEYN--MWRKEE----IIRASGKFELLDRLLPKLRKSGHRVLLFSQMT 450
L+KCCNH YL N + K+E +IR+SGK LLD+LL +LR+ G+RVL+FSQM
Sbjct: 749 LKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMV 808
Query: 451 RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 510
R++DIL YLK F F RLDGS K E R L FNA S F FLLSTRAGGLG+NL
Sbjct: 809 RMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLA 868
Query: 511 TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 570
+ADTV+IFDSDWNPQ D QA+ RAHR G +V ++ LV+ GS+EE ILERAK+KM +D
Sbjct: 869 SADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILERAKKKMVLDH 928
Query: 571 KVIQ----AG--LFNT----TSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSD 620
VIQ G + +T +S+ +E L I++ G L + P E D
Sbjct: 929 LVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKE-PEGEEQEPQEMDID 987
Query: 621 EEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKE-EQKGFEKGFGHESSSITG 679
E E + E L+ +V ++ D+ E E + K + E
Sbjct: 988 EILKRAETHENEPGPL-TVGDELLSQFKVANFSNMDEDDIELEPERNSKNW-EEIIPEDQ 1045
Query: 680 KRKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKRREYLPSEGNESASNSTGAEKKN 738
+R+ +E L ++ + + N + IS + G+R G++S S S K
Sbjct: 1046 RRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRNRRYSGSDSDSISERKRPKK 1105
Query: 739 LDMKNEIFPLASEGTSEDT---FGSAPKRLR--FERRNSESSDIQSVEKSE 784
I +G S+ F + K+ ER ++ + D + V+KSE
Sbjct: 1106 RGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSE 1156
Score = 37 (18.1 bits), Expect = 2.1e-105, Sum P(2) = 2.1e-105
Identities = 18/82 (21%), Positives = 34/82 (41%)
Query: 715 KRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSES 774
KR+E + N+ SN +N D++ + +S D++ S ++ + +
Sbjct: 1587 KRQE--SQQNNDQNSNLNTQVIRNPDVERLKDNTNHDDSSRDSYSSDRHLSQYHDHHKDR 1644
Query: 775 SDIQSVEKSE-HKGVQGSGLNG 795
S +KS+ K S NG
Sbjct: 1645 HQGDSYKKSDSRKRPYSSFSNG 1666
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 1046 (373.3 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 274/711 (38%), Positives = 395/711 (55%)
Query: 105 EQPTLL---QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
+QP+ + +G ELR YQL GL W+ + + ILADEMGLGKTIQTI+ + YL
Sbjct: 462 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 521
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR-EEFF---SERGRFN 217
+ GP ++V P + L +W E TWA + AVVY G + R +R E+ ++R +FN
Sbjct: 522 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 581
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
+L+T Y+++++D+ +L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+Q
Sbjct: 582 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 641
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
NSL+ELWSLL+F++P F+S E+FEE + ++ G +L H + PF+
Sbjct: 642 NSLKELWSLLHFIMPEKFSSWEDFEEE-HGKGREYGYASL------------HKELEPFL 688
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQ 396
LRR K +VEK LP K + IL+ +MSA QK YY+ + L G+ G + N+ M+
Sbjct: 689 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 748
Query: 397 LRKCCNHPYLFVGEYN--MWRKEE----IIRASGKFELLDRLLPKLRKSGHRVLLFSQMT 450
L+KCCNH YL N + K+E +IR+SGK LLD+LL +LR+ G+RVL+FSQM
Sbjct: 749 LKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMV 808
Query: 451 RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 510
R++DIL YLK F F RLDGS K E R L FNA S F FLLSTRAGGLG+NL
Sbjct: 809 RMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLA 868
Query: 511 TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 570
+ADTV+IFDSDWNPQ D QA+ RAHR G +V ++ LV+ GS+EE ILERAK+KM +D
Sbjct: 869 SADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILERAKKKMVLDH 928
Query: 571 KVIQ----AG--LFNT----TSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSD 620
VIQ G + +T +S+ +E L I++ G L + P E D
Sbjct: 929 LVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKE-PEGEEQEPQEMDID 987
Query: 621 EEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKE-EQKGFEKGFGHESSSITG 679
E E + E L+ +V ++ D+ E E + K + E
Sbjct: 988 EILKRAETHENEPGPL-TVGDELLSQFKVANFSNMDEDDIELEPERNSKNW-EEIIPEDQ 1045
Query: 680 KRKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKRREYLPSEGNESASNSTGAEKKN 738
+R+ +E L ++ + + N + IS + G+R G++S S S K
Sbjct: 1046 RRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRNRRYSGSDSDSISERKRPKK 1105
Query: 739 LDMKNEIFPLASEGTSEDT---FGSAPKRLR--FERRNSESSDIQSVEKSE 784
I +G S+ F + K+ ER ++ + D + V+KSE
Sbjct: 1106 RGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSE 1156
Score = 37 (18.1 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 18/82 (21%), Positives = 34/82 (41%)
Query: 715 KRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSES 774
KR+E + N+ SN +N D++ + +S D++ S ++ + +
Sbjct: 1591 KRQE--SQQNNDQNSNLNTQVIRNPDVERLKDNTNHDDSSRDSYSSDRHLSQYHDHHKDR 1648
Query: 775 SDIQSVEKSE-HKGVQGSGLNG 795
S +KS+ K S NG
Sbjct: 1649 HQGDSYKKSDSRKRPYSSFSNG 1670
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 1046 (373.3 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 274/711 (38%), Positives = 395/711 (55%)
Query: 105 EQPTLL---QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
+QP+ + +G ELR YQL GL W+ + + ILADEMGLGKTIQTI+ + YL
Sbjct: 463 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 522
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR-EEFF---SERGRFN 217
+ GP ++V P + L +W E TWA + AVVY G + R +R E+ ++R +FN
Sbjct: 523 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 582
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
+L+T Y+++++D+ +L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+Q
Sbjct: 583 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 642
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
NSL+ELWSLL+F++P F+S E+FEE + ++ G +L H + PF+
Sbjct: 643 NSLKELWSLLHFIMPEKFSSWEDFEEE-HGKGREYGYASL------------HKELEPFL 689
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQ 396
LRR K +VEK LP K + IL+ +MSA QK YY+ + L G+ G + N+ M+
Sbjct: 690 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 749
Query: 397 LRKCCNHPYLFVGEYN--MWRKEE----IIRASGKFELLDRLLPKLRKSGHRVLLFSQMT 450
L+KCCNH YL N + K+E +IR+SGK LLD+LL +LR+ G+RVL+FSQM
Sbjct: 750 LKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMV 809
Query: 451 RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 510
R++DIL YLK F F RLDGS K E R L FNA S F FLLSTRAGGLG+NL
Sbjct: 810 RMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLA 869
Query: 511 TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 570
+ADTV+IFDSDWNPQ D QA+ RAHR G +V ++ LV+ GS+EE ILERAK+KM +D
Sbjct: 870 SADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILERAKKKMVLDH 929
Query: 571 KVIQ----AG--LFNT----TSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSD 620
VIQ G + +T +S+ +E L I++ G L + P E D
Sbjct: 930 LVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKE-PEGEEQEPQEMDID 988
Query: 621 EEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKE-EQKGFEKGFGHESSSITG 679
E E + E L+ +V ++ D+ E E + K + E
Sbjct: 989 EILKRAETHENEPGPL-TVGDELLSQFKVANFSNMDEDDIELEPERNSKNW-EEIIPEDQ 1046
Query: 680 KRKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKRREYLPSEGNESASNSTGAEKKN 738
+R+ +E L ++ + + N + IS + G+R G++S S S K
Sbjct: 1047 RRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRNRRYSGSDSDSISERKRPKK 1106
Query: 739 LDMKNEIFPLASEGTSEDT---FGSAPKRLR--FERRNSESSDIQSVEKSE 784
I +G S+ F + K+ ER ++ + D + V+KSE
Sbjct: 1107 RGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSE 1157
Score = 37 (18.1 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 18/82 (21%), Positives = 34/82 (41%)
Query: 715 KRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSES 774
KR+E + N+ SN +N D++ + +S D++ S ++ + +
Sbjct: 1592 KRQE--SQQNNDQNSNLNTQVIRNPDVERLKDNTNHDDSSRDSYSSDRHLSQYHDHHKDR 1649
Query: 775 SDIQSVEKSE-HKGVQGSGLNG 795
S +KS+ K S NG
Sbjct: 1650 HQGDSYKKSDSRKRPYSSFSNG 1671
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 666 (239.5 bits), Expect = 5.5e-105, Sum P(2) = 5.5e-105
Identities = 150/373 (40%), Positives = 216/373 (57%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P+LL+G LR YQ +GL W+ SL+NN+ NGILADEMGLGKTIQTI+L+AYL K GP
Sbjct: 689 PSLLRGN-LRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKENWGP 747
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI 226
H+IV P +VL NW EF +AP + Y G P +RK R+ + ++ F+V I Y L+
Sbjct: 748 HLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRKGW-NKPDAFHVCIVSYQLV 806
Query: 227 MRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSL 286
++D+ K+ +W YM++DE H +KN + + + QRRLLLTGTP+QN+L ELWSL
Sbjct: 807 VQDQHSFKRKRWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSL 866
Query: 287 LNFLLP-TI--------FNSVENFEEWFNAPFK---DRGQVALTDEEQLLIIRRLHHVIR 334
L FL+P T+ F ++ F++WF P + GQ D+E + +LH V+R
Sbjct: 867 LYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDKETKKTVAKLHQVLR 926
Query: 335 PFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLS 394
P++LRR K +VEK +P K + I+ C +S Q+ Y + +G S+ N
Sbjct: 927 PYLLRRLKADVEKQMPAKYEHIVYCKLSKRQRFLYDDFMSRAQTKATLASGNFMSIVNCL 986
Query: 395 MQLRKCCNHPYLFVGEYNMWRKEEIIR--ASGKFELLDRLLPKLRKSGHRVLLFSQMTRL 452
MQLRK CNHP LF E ++ + ++ ++R L KL K + Q+ R+
Sbjct: 987 MQLRKVCNHPNLF--EVRPILTSFVLEHCVASDYKDVERTLLKLFKKNN------QVNRV 1038
Query: 453 -MDILEIYLKLND 464
+D L + LND
Sbjct: 1039 DLDFLNLVFTLND 1051
Score = 417 (151.9 bits), Expect = 5.5e-105, Sum P(2) = 5.5e-105
Identities = 99/249 (39%), Positives = 152/249 (61%)
Query: 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 483
GK + L LL +L+ +GHR L+F+QMT+++D+LE +L + + ++RLDG+TK E+R L
Sbjct: 1246 GKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILT 1305
Query: 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543
++FN DS +F+LS+R+GGLG+NL ADTVI +DSDWNP MD+Q +DR HRIGQ ++V
Sbjct: 1306 ERFNT-DSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDV 1364
Query: 544 RVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQ-DRREMLKEIMRRGTSSL 602
++ VS +IE IL++A QK +D VIQ G F T ++ R++L + S
Sbjct: 1365 HIYRFVSEHTIESNILKKANQKRQLDNVVIQEGDFTTDYFSKLSVRDLLGSELPENAS-- 1422
Query: 603 GTDVPSEREINRLAARSDEEF--WLFEKMDEERRQKENYRSRLME-DHE-VPEWAYSAPD 658
G D P + + +AA+ + L + DE+ + N R +E D++ E
Sbjct: 1423 GGDKPLIADAD-VAAKDPRQLERLLAQAEDEDDVKAANLAMREVEIDNDDFDESTEKKAA 1481
Query: 659 NKEEQKGFE 667
N+EE+ E
Sbjct: 1482 NEEEENHAE 1490
Score = 47 (21.6 bits), Expect = 8.0e-35, Sum P(2) = 8.0e-35
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 280 LQELWSLLNFLLPTIFNSVENFEEWF---NAPFKDRGQVALTDE 320
L+E SL+++ PT FN E+F+++ + ++RG+ TD+
Sbjct: 37 LREFVSLVDYD-PTHFNDSESFQKFLRETHLSLEERGE-KFTDD 78
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 670 (240.9 bits), Expect = 5.7e-105, Sum P(2) = 5.7e-105
Identities = 139/315 (44%), Positives = 193/315 (61%)
Query: 104 TEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
T P LL+G LR YQ GL W+ L++N++NGILADEMGLGKTIQTIAL+A+L GV
Sbjct: 815 TPIPHLLRG-TLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEHGV 873
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH++V P +V+ NW EF W P + Y G +ER+ R + + +NVLIT Y
Sbjct: 874 WGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGNQEERRQKRRGWMDDNS-WNVLITSY 932
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
L+++D+Q LK+ W YMI+DE H +KN + + ++ + RLLLTGTP+QN+L EL
Sbjct: 933 QLVLQDQQVLKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTEL 992
Query: 284 WSLLNFLLPTI--------FNSVENFEEWFNAPFK---DRGQVALTDEEQLLIIRRLHHV 332
WSLL FL+PT F + NF EWF P + + G+ + DE + ++ +LH V
Sbjct: 993 WSLLFFLMPTDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEAKQ-VVTKLHTV 1051
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQN 392
+RP+ILRR K +VEK +PGK + ++ C +S Q+ Y + +G S+ N
Sbjct: 1052 LRPYILRRLKADVEKQMPGKYEHVVYCRLSKRQRYLYDGFMSRAQTKETLASGNYLSIIN 1111
Query: 393 LSMQLRKCCNHPYLF 407
MQLRK CNHP LF
Sbjct: 1112 CLMQLRKVCNHPDLF 1126
Score = 415 (151.1 bits), Expect = 5.7e-105, Sum P(2) = 5.7e-105
Identities = 95/218 (43%), Positives = 136/218 (62%)
Query: 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 483
GK + LD+LL L+ GHR L+F+QMT+++D+LE +L ++ ++LRLDG+TK E+R L
Sbjct: 1373 GKLQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQILT 1432
Query: 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543
+FN D+ F+LS+R+GGLG+NL ADTVI +D DWNP MD+Q +DR HRIGQ ++V
Sbjct: 1433 DRFNN-DNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDV 1491
Query: 544 RVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTS-TAQDRREML--KEIMRRGTS 600
++ VS +IE IL +A QK +D VIQ G F T T D R+M+ E ++ S
Sbjct: 1492 HIYRFVSEYTIESNILRKANQKRMLDDVVIQEGEFTTDYFTKLDVRDMIGNDEALKDEAS 1551
Query: 601 SLGTDVPSEREINRLAARSDEEFWLFEKMDEERR-QKE 637
+ V R N +R E+ E +D + QKE
Sbjct: 1552 AAMDRVLENRVTN--TSRVFEQAEDKEDIDAAKNAQKE 1587
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 609 (219.4 bits), Expect = 5.8e-105, Sum P(2) = 5.8e-105
Identities = 122/282 (43%), Positives = 177/282 (62%)
Query: 100 EEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 159
++ +QP LL+ L+ YQLEGL W+++L+ N LNGILADEMGLGKT+Q+IAL+A++ E
Sbjct: 207 DDAAIKQPRLLKNCILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIYE 266
Query: 160 NKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPD--ERKAMREEFFSERGRFN 217
GP ++ AP + L NW+NEF+ +AP + + Y G ER A + FF + G
Sbjct: 267 -MDTKGPFLVTAPLSTLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGTG 325
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
++IT Y++I+RD + W ++IVDEGHRLKN C L K + RLLLTGTP+Q
Sbjct: 326 IVITSYEIILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQ 385
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA--------LTDEEQLLIIRRL 329
N+L ELWSLLNF++P IF E F +WF+ + G + + DE Q +I L
Sbjct: 386 NNLAELWSLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQKNLISNL 445
Query: 330 HHVIRPFILRR-KKDEVEKYLPGKSQVILKCDMSAWQKVYYQ 370
H +++PF+LRR KK + LP K + I+ C M++ Q+ +Y+
Sbjct: 446 HTILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFYK 487
Score = 450 (163.5 bits), Expect = 5.8e-105, Sum P(2) = 5.8e-105
Identities = 110/270 (40%), Positives = 154/270 (57%)
Query: 387 SKSLQNLSMQLRKCCNHPYLFVGEY---NMWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
+K LQN+ MQLR+ + +LF Y E +++ SGK ++L +L+P L GH+V
Sbjct: 563 NKKLQNMMMQLRQIIDSTFLFYFPYLHPEDLTLETLLKTSGKLQILQKLIPPLISEGHKV 622
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L++SQ ++D++E + LN F R+DGS E R L++FN+ + +FLLSTRA
Sbjct: 623 LIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAA 682
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL ADTV++FDSDWNPQ+D QA DR HRIGQ+ V V+ L +IE VIL RA
Sbjct: 683 GLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLCCDNTIEHVILTRAA 742
Query: 564 QKMGIDAKVIQAGLFNTTST-AQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEE 622
K ++ VIQ G FN A + LK + G + D+ +E++ L SDE
Sbjct: 743 NKRNLERMVIQMGKFNNLKKLALNEGSFLKA-NKAGVNVTNKDLV--QELSMLLM-SDES 798
Query: 623 FWLFEKMDEERRQKENYRSR-LMEDHEVPE 651
FE QKEN + + D EV E
Sbjct: 799 NIGFENGG----QKENKATEGQLTDKEVEE 824
Score = 40 (19.1 bits), Expect = 9.9e-62, Sum P(2) = 9.9e-62
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 661 EEQKGFEKGFGHESSSITGKRKRKEV 686
E GFE G E+ + G+ KEV
Sbjct: 797 ESNIGFENGGQKENKATEGQLTDKEV 822
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 1017 (363.1 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 235/569 (41%), Positives = 331/569 (58%)
Query: 110 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVI 169
L G LR YQL+G+ W+ F+ IL DEMGLGKT QTIAL YL GP +I
Sbjct: 43 LTGIHLRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLI 102
Query: 170 VAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD 229
+ P +VL NW E +AP ++ V Y G D+R ++++ E RF+VL+T Y++ ++D
Sbjct: 103 LCPLSVLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQDLKQE-SRFHVLLTTYEICLKD 161
Query: 230 RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNF 289
+LK W ++VDE HRLKN L KT+S + + LLLTGTPIQNSLQEL+SLL+F
Sbjct: 162 ASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSF 221
Query: 290 LLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYL 349
+ P +F S E E+ F R Q + E L+ +++PF+LRR K EV L
Sbjct: 222 VEPDLF-SKEQVED-----FVQRYQDIEKESESA---SELYKLLQPFLLRRVKAEVATEL 272
Query: 350 PGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVG 409
P K++V++ MSA QK YY+ + + T K LQN+ QLRKC +HPYLF G
Sbjct: 273 PRKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNVLSQLRKCVDHPYLFDG 332
Query: 410 -EYNMWR-KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKF 467
E + + +I ASGK LLD+LL L GHRVLLFSQMT+++DIL+ YL + +
Sbjct: 333 VEPEPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYRGYSY 392
Query: 468 LRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMD 527
R+DGS + EER +K F P F FLLSTRAGG+G+NL ADTVI FDSD+NPQ D
Sbjct: 393 ERVDGSVRGEERHLAIKNFG--QQPIFTFLLSTRAGGVGMNLTAADTVIFFDSDFNPQND 450
Query: 528 QQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFN--TTSTAQ 585
QA RAHRIGQ K V+V L+ ++EE++ +A K+ + +I+ G F A
Sbjct: 451 LQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIEGGHFTLGAQKPAA 510
Query: 586 DRREMLKEIMRRGTSSLGTDVPS---EREINRLAARSDEEFWLFEKM---DEERRQKENY 639
D L EI++ G L + S E ++ + +++ W+ + + +E R+ E
Sbjct: 511 DADLQLSEILKFGLDKLLSSEGSTMHEIDLKSILGETEDGHWVSDALPTAEEGSREPEEG 570
Query: 640 RSRLMEDHEVPEWAYSAPDNKEEQKGFEK 668
++ M E + YS +KE+++ FE+
Sbjct: 571 KNH-MYLFEGKD--YSKEPSKEDRESFEQ 596
Score = 41 (19.5 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 36/175 (20%), Positives = 62/175 (35%)
Query: 606 VPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKG 665
+P+ E +R +LFE D + + R + + + ++E +
Sbjct: 557 LPTAEEGSREPEEGKNHMYLFEGKDYSKEPSKEDRESFEQLVNLQKTLLEKT-SQEGRLL 615
Query: 666 FEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGN 725
KG + G KRK ++ + L D + K + K KR++ E
Sbjct: 616 RNKGSVPIPGLVEGSTKRKRILSPEELEDRR--KRRQEAAAKRKRLLEEKRKK---KEEA 670
Query: 726 ESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSV 780
E E N + F L SE SE G + E + +S+ I+ V
Sbjct: 671 EHKKKMAWWESNNY----QSFCLPSE-ESEPEDGEDESSAQLEYEDPDSTSIRYV 720
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 663 (238.4 bits), Expect = 8.4e-105, Sum P(2) = 8.4e-105
Identities = 133/316 (42%), Positives = 204/316 (64%)
Query: 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
+QPT+L +L+ YQL+G+ W+++L++ +NGILADEMGLGKTIQ+IA++A+L E K +
Sbjct: 1153 KQPTILNA-DLKPYQLKGMTWIVNLYDQGINGILADEMGLGKTIQSIAVLAHLAEEKNIW 1211
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-----EFFSERGRFNVL 219
GP +IV PK+ L NW NEF+ + P+ + Y G +R +R+ + + F+VL
Sbjct: 1212 GPFLIVTPKSTLHNWKNEFAKFVPAFKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVL 1271
Query: 220 ITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNS 279
IT Y++I+RD +Y +++W YM++DE H +K+ KT+ + + RLLLTGTPIQNS
Sbjct: 1272 ITSYNVIVRDEKYFHRLRWQYMVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPIQNS 1331
Query: 280 LQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG--QVALTDEEQLLIIRRLHHVIRPFI 337
+ ELW+LL+F++PT F+S + F EWF+ ++ Q L +E QL RLH +++PF+
Sbjct: 1332 MAELWALLHFIMPTFFDSHDEFAEWFSKDIENHAMSQGGL-NEHQL---NRLHMILKPFM 1387
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQV-TDVGRVGLDTGT-----GKSKSLQ 391
LRR K +VE +P K++V + C+++ QK YQ + +++ L G G K+L
Sbjct: 1388 LRRIKRDVENEMPSKTEVEVYCNLTHRQKKLYQSIRSNISITELLGGASFSEQGSMKALM 1447
Query: 392 NLSMQLRKCCNHPYLF 407
N MQ RK CNHP F
Sbjct: 1448 NFVMQFRKVCNHPETF 1463
Score = 424 (154.3 bits), Expect = 8.4e-105, Sum P(2) = 8.4e-105
Identities = 86/184 (46%), Positives = 127/184 (69%)
Query: 406 LFVGEYNMWRKE--EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN 463
LF G ++W + + SGK ++LD+LL L+ GHRVL++SQ T++++ILE ++
Sbjct: 1748 LF-GSTSIWMPSFSKSLNDSGKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFR 1806
Query: 464 DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWN 523
+K+LRLDGS+K ++R ++ F + D F FLLSTRA G+G+NL +ADTVI +DSDWN
Sbjct: 1807 KYKYLRLDGSSKLDDRRDMVDDFQS-DPSIFAFLLSTRACGIGINLTSADTVIFYDSDWN 1865
Query: 524 PQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTST 583
P +D+QA+DRAHR+GQ + V V+ L++ +IEE IL+RAKQK I + VI G F +
Sbjct: 1866 PTVDEQAQDRAHRLGQTRPVTVYRLITKNTIEEKILKRAKQKHQIQSIVIAGGKFESNPE 1925
Query: 584 AQDR 587
D+
Sbjct: 1926 ELDQ 1929
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 1031 (368.0 bits), Expect = 9.2e-105, Sum P(2) = 9.2e-105
Identities = 225/500 (45%), Positives = 319/500 (63%)
Query: 102 KVTEQPTLLQGG-ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
++ QP L G LR YQ++GL W+L + + ILADEMGLGKTIQTI + L +
Sbjct: 514 RIKNQPEFLSSGLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKI 573
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE---EF-FSERGRF 216
+ GP + V P + + W EF WAP + V Y G R+ +++ +F S+R +F
Sbjct: 574 HHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTYLGDIKSRELIQQYEWQFESSKRLKF 633
Query: 217 NVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPI 276
N ++T Y+++++D+Q+L +QW ++VDE HRLKN + L K++ + RLL+TGTP+
Sbjct: 634 NCILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPL 693
Query: 277 QNSLQELWSLLNFLLPTIFNSVENFE-EWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 335
QNSL+ELW+LL+F++P F++ ENFE + NA +D+G RLH + P
Sbjct: 694 QNSLKELWALLHFIMPDKFDTWENFEVQHGNA--EDKGYT------------RLHQQLEP 739
Query: 336 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLS 394
+ILRR K +VEK LP K + IL+ +M++ QK YY+ + L G G + + N+
Sbjct: 740 YILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIV 799
Query: 395 MQLRKCCNHPYLF-VGEYNMW--RKEE----IIRASGKFELLDRLLPKLRKSGHRVLLFS 447
++L+KCCNH L E+ + +++E +++ SGK LLD+LL +L+++GHRVL+FS
Sbjct: 800 IELKKCCNHAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFS 859
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R++D+L YL+ F F RLDGS K E R L FNA S F FLLSTRAGGLG+
Sbjct: 860 QMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGI 919
Query: 508 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 567
NL TADTVIIFDSDWNPQ D QA+ RAHRIGQK +V ++ LV+ S+EE I+ERAKQKM
Sbjct: 920 NLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMV 979
Query: 568 IDAKVIQAGLFNTTSTAQDR 587
+D VIQ + T T D+
Sbjct: 980 LDHLVIQR-MDTTGRTVLDK 998
Score = 48 (22.0 bits), Expect = 9.2e-105, Sum P(2) = 9.2e-105
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 604 TDVPSEREINRLAARSDEEFWLFEKMDEERRQK--ENYRSRLMEDHEVPEWAYSAPDNKE 661
+D S+++ N D + W + + E R+ + R++ MED +P +A + E
Sbjct: 1079 SDSVSKQDQNAAGEEDDSKDW-DDIIPEGFRKAIDDQERAKEMEDLYLPPRRKTAANQNE 1137
Query: 662 EQKGFEKG 669
++G KG
Sbjct: 1138 GKRGAGKG 1145
Score = 42 (19.8 bits), Expect = 4.0e-104, Sum P(2) = 4.0e-104
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 707 ISKLSTRGKRREYLPSEGNESASNSTGAEKKNL 739
I ++ T G R L GN +SNS K +L
Sbjct: 985 IQRMDTTG--RTVLDKSGNGHSSNSNPFNKDDL 1015
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 987 (352.5 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 221/522 (42%), Positives = 319/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKT+QTI + Y L +G + GP+++
Sbjct: 80 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFL-YSLYKEGHSKGPYLVS 138
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS------ERGR--------- 215
AP + + NW EF WAP V Y G + R +RE FS G+
Sbjct: 139 APLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEV 198
Query: 216 ---FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++ Y+I +LLLT
Sbjct: 199 QIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLT 258
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 259 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 306
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 307 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLL 366
Query: 392 NLSMQLRKCCNHPYLF--------VGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + ++++SGK LL ++L KLR GHRV
Sbjct: 367 NIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRV 426
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 427 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAG 486
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 487 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 546
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + S + ++E L +I++ GT L D
Sbjct: 547 RKMMLTHLVVRPGL-GSKSGSMTKQE-LDDILKFGTEELFKD 586
Score = 59 (25.8 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 22/92 (23%), Positives = 41/92 (44%)
Query: 679 GKRKRKEVVYAD-TLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKK 737
GKR RK+V Y D + D +W + + Q + + + ++ +S + + K
Sbjct: 725 GKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQSRRQLK 784
Query: 738 NLDMKNEIFPL-ASEGTSEDTFG-SAPKRLRF 767
+ D + PL A G + + G +A +R F
Sbjct: 785 S-DRDKPLPPLLARVGGNIEVLGFNARQRKAF 815
Score = 41 (19.5 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 634 RQKENYRSRLMEDHEVPEWAYSAPDNKEE 662
R++ NY ED E W DN+ E
Sbjct: 729 RKQVNYNDASQEDQE---WQDELSDNQSE 754
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 991 (353.9 bits), Expect = 3.2e-103, Sum P(2) = 3.2e-103
Identities = 222/522 (42%), Positives = 320/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKT+QT A+ Y L +G + GP ++
Sbjct: 707 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEGHSKGPFLVS 765
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP + V Y G D R +RE FS E RG
Sbjct: 766 APLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFSFENNAIRGGKKPSKMKKEA 825
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D L + W ++VDE HRLKN++ + ++ Y +Q +LLLT
Sbjct: 826 SVKFHVLLTSYELITIDTAVLGSIDWACLVVDEAHRLKNNQSKFFRILNNYPLQHKLLLT 885
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P F+++E F E F D + E+Q I++LH +
Sbjct: 886 GTPLQNNLEELFHLLNFLTPERFSNLEGFLE----EFAD-----IAKEDQ---IKKLHDM 933
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K++P K+++I++ ++S QK YY+ + L+T G G SL
Sbjct: 934 LGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKFILTRNFEALNTRGGGNQVSLL 993
Query: 392 NLSMQLRKCCNHPYLFVGEY--------NMWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF M+ + ++SGK LL ++L KL++ GHRV
Sbjct: 994 NVVMDLKKCCNHPYLFPAAAMEAAKMPNGMYEGGGLTKSSGKLLLLQKMLRKLKEGGHRV 1053
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP +P F+FLLSTRAG
Sbjct: 1054 LIFSQMTKMLDLLEDFLENEGYKYERIDGGITGGMRQEAIDRFNAPGAPQFVFLLSTRAG 1113
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTV+I+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1114 GLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQVAK 1173
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + T + ++ L +I++ GT L D
Sbjct: 1174 KKMMLTHLVVRPGLGSKTGSMS--KQELDDILKFGTEELFKD 1213
Score = 75 (31.5 bits), Expect = 3.2e-103, Sum P(2) = 3.2e-103
Identities = 32/109 (29%), Positives = 45/109 (41%)
Query: 630 DEERRQKENYRSRLMEDHEV-PE-WAYSAPDNKEEQK-GFEKGFGHESSSITGKRKRKEV 686
DEE ++E R + ++ V P+ W + E+Q+ + G GKR RK+V
Sbjct: 1271 DEEEAEEEVQREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGK------GKRIRKQV 1324
Query: 687 VYAD-TLSDLQWMKAVENGQ-DISKLSTRGKRREYLPSEGNESASNSTG 733
Y D + D W +GQ D S S G SE N N G
Sbjct: 1325 NYNDGSQEDRDWQDDQSDGQSDYSVASEEGDEDFDERSEANSRRPNRKG 1373
Score = 64 (27.6 bits), Expect = 4.6e-102, Sum P(2) = 4.6e-102
Identities = 42/174 (24%), Positives = 70/174 (40%)
Query: 580 TTSTAQDRREMLKEIMRRGT-SSLGTDVPSEREINRLA-ARSDEEFWLFEKMDEERRQKE 637
TTSTA + + GT S + P+ + + A D + + D E+ E
Sbjct: 1511 TTSTAGSHPDSPSKTPTTGTPSDTQPNTPAPDGVPKAEDAGKDADKEKVKNGDGEKEANE 1570
Query: 638 NYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQW 697
N S ++ + A SA + KE+ K EK ESSS E AD + +
Sbjct: 1571 NKNSEVIAVPDEDGRAASASEEKEKGKE-EKEKTPESSS--------EAEKADGKQEEKE 1621
Query: 698 MKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASE 751
+ ++G K K + SE ++ S++ G +K + K + P+ E
Sbjct: 1622 EENAKSGDSEEKTDDTDKPKG---SEADKETSDAKGEKKDDEPEKMDTTPVTDE 1672
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 1000 (357.1 bits), Expect = 5.8e-103, Sum P(2) = 5.8e-103
Identities = 232/569 (40%), Positives = 326/569 (57%)
Query: 110 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVI 169
L G LR+YQLEG+ W+ F+ IL DEMGLGKT QTIAL YL GP +I
Sbjct: 41 LTGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLI 100
Query: 170 VAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD 229
+ P +VL NW E +AP ++ V Y G +ER ++++ E RF+VL+T Y++ ++D
Sbjct: 101 LCPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDLKQE-SRFHVLLTTYEICLKD 159
Query: 230 RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNF 289
+LK W ++VDE HRLKN L KT+S + + LLLTGTPIQNSLQEL+SLL+F
Sbjct: 160 ASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSF 219
Query: 290 LLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYL 349
+ P +F+ E + F R Q + E LH +++PF+LRR K EV L
Sbjct: 220 VEPDLFSKEEVGD------FIQRYQDIEKESESA---SELHKLLQPFLLRRVKAEVATEL 270
Query: 350 PGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVG 409
P K++V++ MSA QK YY+ + + T K LQN+ QLRKC +HPYLF G
Sbjct: 271 PKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDG 330
Query: 410 -EYNMWRK-EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKF 467
E + + + ASGK LLD+LL L GHRVLLFSQMT+++DIL+ Y+ + +
Sbjct: 331 VEPEPFEVGDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSY 390
Query: 468 LRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMD 527
R+DGS + EER +K F P F+FLLSTRAGG+G+NL ADTVI DSD+NPQ D
Sbjct: 391 ERVDGSVRGEERHLAIKNFG--QQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQND 448
Query: 528 QQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFN--TTSTAQ 585
QA RAHRIGQ K V+V L+ ++EE++ +A K+ + +I+ G F A
Sbjct: 449 LQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLGAQKPAA 508
Query: 586 DRREMLKEIMRRGTSSLGTDVPS---EREINRLAARSDEEFWLFEKMDEER---RQKENY 639
D L EI++ G L S E ++ + + + W+ + + R +E
Sbjct: 509 DADLQLSEILKFGLDKLLASEGSTMDEIDLESILGETKDGQWVSDALPAAEGGSRDQEEG 568
Query: 640 RSRLMEDHEVPEWAYSAPDNKEEQKGFEK 668
++ M E + YS +KE++K FE+
Sbjct: 569 KNH-MYLFEGKD--YSKEPSKEDRKSFEQ 594
Score = 40 (19.1 bits), Expect = 5.8e-103, Sum P(2) = 5.8e-103
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 677 ITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRRE 718
+ G KRK V+ + L D Q K E +L KR++
Sbjct: 625 VEGSTKRKRVLSPEELEDRQ-KKRQEAAAKRRRLIEEKKRQK 665
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 619 (223.0 bits), Expect = 7.2e-103, Sum P(3) = 7.2e-103
Identities = 127/325 (39%), Positives = 201/325 (61%)
Query: 100 EEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 159
E K QP + +G L+ YQ++G+ W+ ++++ ++GILADEMGLGKT+Q+IA + ++ E
Sbjct: 521 EMKDLPQPKMFKG-TLKGYQIKGMTWLANIYDQGISGILADEMGLGKTVQSIAFLCHIAE 579
Query: 160 NKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSER------ 213
+ GV GP ++++P + L NW E S + P V Y G P ERK +R+ F+ ++
Sbjct: 580 HYGVWGPFLVISPASTLHNWQQEMSRFVPDFKVVPYWGSPAERKILRQ-FWDQKHLHTRD 638
Query: 214 GRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTG 273
F+V+IT Y L++ D +Y +++W YM++DE +K+ K + G+ + RLLL+G
Sbjct: 639 ASFHVVITSYQLVVSDYKYFNRIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSG 698
Query: 274 TPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVAL-TDEEQLLIIRRLHHV 332
TPIQNS+ ELW+LL+F++PT+F+S + F EWF+ + + DE+Q I RLH +
Sbjct: 699 TPIQNSMAELWALLHFIMPTLFDSHDEFNEWFSKDIESHAENKTGIDEKQ---ISRLHMI 755
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVG----LDTG---TG 385
++PF+LRR K +VE L K ++++ C ++ QK+ Y+ + R+ L +G T
Sbjct: 756 LKPFMLRRIKKDVENELSDKIEIMVYCPLTIRQKLLYRALKQKIRIEDLLHLTSGSTTTS 815
Query: 386 KSKS---LQNLSMQLRKCCNHPYLF 407
S S L NL MQ RK CNHP LF
Sbjct: 816 SSSSASNLMNLVMQFRKVCNHPELF 840
Score = 428 (155.7 bits), Expect = 7.2e-103, Sum P(3) = 7.2e-103
Identities = 85/163 (52%), Positives = 117/163 (71%)
Query: 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 475
KE +I +GK +LD LL +L+ +GHRVL++SQMT+++D+LE Y+ +++RLDGS+K
Sbjct: 1148 KETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSK 1207
Query: 476 TEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAH 535
R ++ F + F+FLLSTRAGGLG+NL ADTVI +DSDWNP +DQQA DRAH
Sbjct: 1208 ISARRDMVADFQTR-ADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1266
Query: 536 RIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 578
R+GQ K+V V+ L+ G+IEE IL+RA++K I VI G F
Sbjct: 1267 RLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNF 1309
Score = 45 (20.9 bits), Expect = 7.2e-103, Sum P(3) = 7.2e-103
Identities = 26/134 (19%), Positives = 51/134 (38%)
Query: 630 DEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYA 689
DEE K ++L +P S + QK G +++ + +V
Sbjct: 1326 DEEIEMKYRQEAKLQSSSPIPAATQSERKRRHPQKDVNMGGTTIAATSATQNPDDDVPSC 1385
Query: 690 DTLSDLQWMKAVENGQDI---SKLSTRGKRREYLPSEGNES-ASNSTGAEKKNLDMKNEI 745
+ + ++ E+ D+ S S+ G + P+ E+ +T ++ +D +NE
Sbjct: 1386 SSAAKRIKLETEEDFIDVGITSSASSVGTDSNH-PTLSQETYVPGATCVQQTEIDSENEA 1444
Query: 746 FPLASEGTSEDTFG 759
L +G S G
Sbjct: 1445 --LVVDGDSPTMLG 1456
Score = 39 (18.8 bits), Expect = 4.8e-35, Sum P(3) = 4.8e-35
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 330 HHVIRPFILRRKKDEVEK 347
H VIR IL++K +E+
Sbjct: 1012 HRVIRSKILKKKTSLIEE 1029
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 998 (356.4 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 233/569 (40%), Positives = 329/569 (57%)
Query: 110 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVI 169
L G LR YQL+G+ W+ F+ IL DEMGLGKT QTIAL YL GP +I
Sbjct: 43 LTGIHLRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLI 102
Query: 170 VAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD 229
+ P +VL NW E +AP ++ V Y G D+R ++++ E RF+VL+T Y++ ++D
Sbjct: 103 LCPLSVLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQDLKQE-SRFHVLLTTYEICLKD 161
Query: 230 RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNF 289
+LK W ++VDE HRLKN L KT+S + + LLLTGTPIQNSLQEL+SLL+F
Sbjct: 162 ASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSF 221
Query: 290 LLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYL 349
+ P +F S E E+ F R Q + E L+ +++PF+LRR K EV L
Sbjct: 222 VEPDLF-SKEQVED-----FVQRYQDIEKESESA---SELYKLLQPFLLRRVKAEVATEL 272
Query: 350 PGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVG 409
P K++V++ MSA QK YY+ + + K LQN+ QLRKC +HPYLF G
Sbjct: 273 PRKTEVVIYHGMSALQKKYYKAILMKDLDAFENEMAKKVKLQNVLSQLRKCVDHPYLFDG 332
Query: 410 -EYNMWR-KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKF 467
E + + +I ASGK LLD+LL L GHRVLLFSQMT+++DIL+ YL + +
Sbjct: 333 VEPEPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYRGYSY 392
Query: 468 LRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMD 527
R+DGS + EER +K F P F FL STRAGG+G+NL ADTVI FDSD+NPQ D
Sbjct: 393 ERVDGSVRGEERHLAIKNFG--QQPIFTFL-STRAGGVGMNLTAADTVIFFDSDFNPQND 449
Query: 528 QQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFN--TTSTAQ 585
QA RAHRIGQ K V+V L+ ++EE++ +A K+ + +I+ G F A
Sbjct: 450 LQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIEGGHFTLGAQKPAA 509
Query: 586 DRREMLKEIMRRGTSSLGTDVPS---EREINRLAARSDEEFWLFEKM---DEERRQKENY 639
D L EI++ G L + S E ++ + +++ W+ + + +E R+ E
Sbjct: 510 DADLQLSEILKFGLDKLLSSEGSTMHEIDLKSILGETEDGHWVSDALPTAEEGSREPEEG 569
Query: 640 RSRLMEDHEVPEWAYSAPDNKEEQKGFEK 668
++ M E + YS +KE+++ FE+
Sbjct: 570 KNH-MYLFEGKD--YSKEPSKEDRESFEQ 595
Score = 41 (19.5 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 36/175 (20%), Positives = 62/175 (35%)
Query: 606 VPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKG 665
+P+ E +R +LFE D + + R + + + ++E +
Sbjct: 556 LPTAEEGSREPEEGKNHMYLFEGKDYSKEPSKEDRESFEQLVNLQKTLLEKT-SQEGRLL 614
Query: 666 FEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGN 725
KG + G KRK ++ + L D + K + K KR++ E
Sbjct: 615 RNKGSVPIPGLVEGSTKRKRILSPEELEDRR--KRRQEAAAKRKRLLEEKRKK---KEEA 669
Query: 726 ESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSV 780
E E N + F L SE SE G + E + +S+ I+ V
Sbjct: 670 EHKKKMAWWESNNY----QSFCLPSE-ESEPEDGEDESSAQLEYEDPDSTSIRYV 719
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 995 (355.3 bits), Expect = 7.6e-103, Sum P(2) = 7.6e-103
Identities = 218/519 (42%), Positives = 317/519 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEG+ W+ ++N + ILADEMGLGKT+Q++ + Y L +G T GP +I
Sbjct: 613 GGNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFL-YTLMKEGHTKGPFLIA 671
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-----ERG----------- 214
AP + + NW E W P V Y G + R +RE FS RG
Sbjct: 672 APLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLE 731
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+ I D+ L + W ++VDE HRLKN++ K + Y IQ R+LLT
Sbjct: 732 NLKFHVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLT 791
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN +E+F A F + ++ E+Q I +LH++
Sbjct: 792 GTPLQNNLEELFHLLNFLAPDRFNQLESF----TAEFSE-----ISKEDQ---IEKLHNL 839
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSK-SLQ 391
+ P +LRR K +V +P K ++I++ ++SA QK YY+ + L+ G ++ SL
Sbjct: 840 LGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNFDALNVKNGGTQMSLI 899
Query: 392 NLSMQLRKCCNHPYLFVG--------EYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M+L+KCCNHPYLF+ + M+ +I+ +GKF LL ++L KL+ GHRV
Sbjct: 900 NIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLKDGGHRV 959
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT ++DILE + + +K+ R+DGS ++R + ++NAP + F+FLLSTRAG
Sbjct: 960 LIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAG 1019
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHR+GQK +V ++ V+ GS+EE I AK
Sbjct: 1020 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAK 1079
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSL 602
+KM + V++AGL + + E L +++R GT L
Sbjct: 1080 KKMLLTHLVVRAGLGAKDGKSMSKTE-LDDVLRWGTEEL 1117
Score = 65 (27.9 bits), Expect = 7.6e-103, Sum P(2) = 7.6e-103
Identities = 34/126 (26%), Positives = 52/126 (41%)
Query: 660 KEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSD-LQWMKAVENGQDISKLSTRGKRRE 718
KEE+ E G +SS K +E+V+ D D L E GQD K E
Sbjct: 1119 KEEEAPVEGADGEGTSS--KKPNEQEIVWDDAAVDFLLDRNKEEEGQDGEK--KEHWTNE 1174
Query: 719 YLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQ 778
YL S + A+ +T E + D + + EGT E K L+ + +++Q
Sbjct: 1175 YLSSF--KVATYNT-KEADDADDDEDETEVIKEGTEEQDPNYWEKLLKHHYEQDQETELQ 1231
Query: 779 SVEKSE 784
+ K +
Sbjct: 1232 KLGKGK 1237
Score = 41 (19.5 bits), Expect = 2.6e-100, Sum P(2) = 2.6e-100
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 679 GKRKRKEVVYADTLSDLQWMKAVENGQ 705
GKR R++V YA W + +N Q
Sbjct: 1236 GKRVRRQVNYASENMGQDW--SAQNNQ 1260
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 995 (355.3 bits), Expect = 7.6e-103, Sum P(2) = 7.6e-103
Identities = 218/519 (42%), Positives = 317/519 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEG+ W+ ++N + ILADEMGLGKT+Q++ + Y L +G T GP +I
Sbjct: 613 GGNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFL-YTLMKEGHTKGPFLIA 671
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-----ERG----------- 214
AP + + NW E W P V Y G + R +RE FS RG
Sbjct: 672 APLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLE 731
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+ I D+ L + W ++VDE HRLKN++ K + Y IQ R+LLT
Sbjct: 732 NLKFHVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLT 791
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN +E+F A F + ++ E+Q I +LH++
Sbjct: 792 GTPLQNNLEELFHLLNFLAPDRFNQLESF----TAEFSE-----ISKEDQ---IEKLHNL 839
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSK-SLQ 391
+ P +LRR K +V +P K ++I++ ++SA QK YY+ + L+ G ++ SL
Sbjct: 840 LGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNFDALNVKNGGTQMSLI 899
Query: 392 NLSMQLRKCCNHPYLFVG--------EYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M+L+KCCNHPYLF+ + M+ +I+ +GKF LL ++L KL+ GHRV
Sbjct: 900 NIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLKDGGHRV 959
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT ++DILE + + +K+ R+DGS ++R + ++NAP + F+FLLSTRAG
Sbjct: 960 LIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAG 1019
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHR+GQK +V ++ V+ GS+EE I AK
Sbjct: 1020 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAK 1079
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSL 602
+KM + V++AGL + + E L +++R GT L
Sbjct: 1080 KKMLLTHLVVRAGLGAKDGKSMSKTE-LDDVLRWGTEEL 1117
Score = 65 (27.9 bits), Expect = 7.6e-103, Sum P(2) = 7.6e-103
Identities = 34/126 (26%), Positives = 52/126 (41%)
Query: 660 KEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSD-LQWMKAVENGQDISKLSTRGKRRE 718
KEE+ E G +SS K +E+V+ D D L E GQD K E
Sbjct: 1119 KEEEAPVEGADGEGTSS--KKPNEQEIVWDDAAVDFLLDRNKEEEGQDGEK--KEHWTNE 1174
Query: 719 YLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQ 778
YL S + A+ +T E + D + + EGT E K L+ + +++Q
Sbjct: 1175 YLSSF--KVATYNT-KEADDADDDEDETEVIKEGTEEQDPNYWEKLLKHHYEQDQETELQ 1231
Query: 779 SVEKSE 784
+ K +
Sbjct: 1232 KLGKGK 1237
Score = 41 (19.5 bits), Expect = 2.6e-100, Sum P(2) = 2.6e-100
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 679 GKRKRKEVVYADTLSDLQWMKAVENGQ 705
GKR R++V YA W + +N Q
Sbjct: 1236 GKRVRRQVNYASENMGQDW--SAQNNQ 1260
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 620 (223.3 bits), Expect = 1.0e-102, Sum P(2) = 1.0e-102
Identities = 129/310 (41%), Positives = 188/310 (60%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P L +G LR YQ GL+W+ +L ++N NGILADEMGLGKTIQTIAL+A+L K GP
Sbjct: 440 PFLFRG-TLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQTIALLAHLACEKENWGP 498
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI 226
H+I+ P +V+ NW EF + P + Y G P ERK R ++ ++V IT Y L+
Sbjct: 499 HLIIVPTSVMLNWEMEFKKFLPGFKILTYYGNPQERKEKRSGWYKP-DTWHVCITSYQLV 557
Query: 227 MRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSL 286
++D Q ++ +W YMI+DE H +KN +++ + + RLLLTGTP+QN+L ELWSL
Sbjct: 558 LQDHQPFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSL 617
Query: 287 LNFLLP-------TIFNSVENFEEWFNAPFK---DRGQVALTDEEQLLIIRRLHHVIRPF 336
L FL+P + F ++++F++WF+ P + GQ + E + + +LH V+RP+
Sbjct: 618 LYFLMPAGVTQNNSAFANLKDFQDWFSKPMDRLIEEGQDM--NPEAMNTVAKLHRVLRPY 675
Query: 337 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQ 396
+LRR K EVEK +P K + ++ C +S Q+ Y + R +G S+ N MQ
Sbjct: 676 LLRRLKTEVEKQMPAKYEHVVYCQLSKRQRFLYDDFINRARTREILASGNFMSIINCLMQ 735
Query: 397 LRKCCNHPYL 406
LRK CNHP L
Sbjct: 736 LRKVCNHPNL 745
Score = 439 (159.6 bits), Expect = 1.0e-102, Sum P(2) = 1.0e-102
Identities = 96/206 (46%), Positives = 137/206 (66%)
Query: 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 483
GK ++LDRLL L +GHRVL+F+QMT+++DILE +L ++ ++LRLDG+TK E+R L
Sbjct: 991 GKLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILT 1050
Query: 484 KQFNAPDS-PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 542
++FN D P +F+LSTR+GGLG+NL ADTVI +DSDWNPQ+D QA+DR+HRIGQ ++
Sbjct: 1051 ERFNNDDKIP--VFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRD 1108
Query: 543 VRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTT----STAQDRREMLKEIMRR- 597
V ++ L+S ++E +L RA QK +D VIQ G F T + D ++ E +++
Sbjct: 1109 VHIYRLISEYTVESNMLRRANQKRMLDKIVIQGGEFTTEWFRKADVLDLFDLDDESLKKV 1168
Query: 598 -GTSSLGTDVPSEREINRLAARSDEE 622
S G+ E LAA DEE
Sbjct: 1169 KADSDSGSTKNEENWEVALAAAEDEE 1194
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 993 (354.6 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
Identities = 238/657 (36%), Positives = 373/657 (56%)
Query: 89 QRQYNSAIHSIEEKVTEQPTLLQ--GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGK 146
QR + + +K +QP L+ G +L +Q+EG+ W+ + + ILADEMGLGK
Sbjct: 239 QRDRPAPTIDLNKKYEDQPVFLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGK 298
Query: 147 TIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR 206
TIQT+ + L + GP +I P + L NW E WAP + V Y G R +R
Sbjct: 299 TIQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYVGGKTARAVIR 358
Query: 207 --EEFFSE-----------RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHE 253
E F E + +FNV++T Y+ I D +L + W ++VDE HRL++++
Sbjct: 359 KHEISFEEVTTKTMRENQTQYKFNVMLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQ 418
Query: 254 CALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG 313
+ +S Y+I +LLLTGTP+QN+L+EL+ LLNFL FN ++ F+ A F D
Sbjct: 419 SKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQTFQ----AEFTD-- 472
Query: 314 QVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT 373
++ EEQ ++RLH ++ P +LRR K +V K +P KS+ I++ ++S+ QK +Y+ +
Sbjct: 473 ---VSKEEQ---VKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHIL 526
Query: 374 DVGRVGLDT-GTGKSKSLQNLSMQLRKCCNHPYLF--------VGEYNMWRKEEIIRASG 424
L+ G G+ SL N+ M LRKCCNHPYLF + ++ + +ASG
Sbjct: 527 TKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSLTKASG 586
Query: 425 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLK 484
K +LL ++L +L+ HRVLLFSQMT+++++LE +L+ +++ R+DGS K + R +
Sbjct: 587 KLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAID 646
Query: 485 QFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVR 544
+FN P S +F+FLLSTRAGGLG+NL TADTVIIFDSDWNP D QA RAHR+GQKK+V
Sbjct: 647 RFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVM 706
Query: 545 VFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFN-TTSTAQDRREMLKEIMRRGTSSLG 603
++ V+ S+EE I++ AK KM + V++ G+ TT+ ++D L++I+R GT L
Sbjct: 707 IYRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDE---LEDILRFGTEDLF 763
Query: 604 TDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQ 663
D SE A +D L ++ + +KE++ + + +V +Y+ ++ EE
Sbjct: 764 KDGKSEAIHYDDKAVAD----LLDRTNRGIEEKESWANEYLSSFKVA--SYATKEDHEEH 817
Query: 664 KGFEKGFGHES----SSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR 716
+ + ++ GK + K L Q ++ ++ D+ + +GKR
Sbjct: 818 DDYNNDAENTDPFYWENLMGKSQPK-------LPKKQKKQSQQSQVDVESIMGKGKR 867
Score = 40 (19.1 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 660 KEEQKGFEKGFGHESSSITGKRKRKEVVYAD 690
K++++ + ES GKR RKE+ Y++
Sbjct: 846 KQKKQSQQSQVDVESIMGKGKRIRKEIDYSN 876
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 993 (354.6 bits), Expect = 5.8e-102, Sum P(3) = 5.8e-102
Identities = 226/522 (43%), Positives = 320/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKTIQTI + Y L +G T GP ++
Sbjct: 733 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFL-YSLYKEGHTKGPFLVS 791
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP V Y G D R +RE FS E +G
Sbjct: 792 APLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 851
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++GY+I +LLLT
Sbjct: 852 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 911
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 912 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 959
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLL 1019
Query: 392 NLSMQLRKCCNHPYLF-VGEYNM-------WRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + +I+ASGK LL ++L KL++ GHRV
Sbjct: 1020 NIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLKEQGHRV 1079
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1080 LIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAG 1139
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVIIFDSDWNP D QA RAHRIGQ +V ++ V+ S+EE I + AK
Sbjct: 1140 GLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAK 1199
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + + + ++E L +I++ GT L D
Sbjct: 1200 RKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILKFGTEELFKD 1239
Score = 47 (21.6 bits), Expect = 5.8e-102, Sum P(3) = 5.8e-102
Identities = 28/107 (26%), Positives = 44/107 (41%)
Query: 711 STRGKRREYLPSEGNESASNSTGAE----KKNLDMKN--EIFP------LASEGTSEDTF 758
ST G+R E P +G E G K+ D+K E+ P L S G E+
Sbjct: 1645 STPGERGEEKPLDGQEQRERPEGETGDLGKRAEDVKGDRELRPGPPRDELRSNGRREEKV 1704
Query: 759 GSAPKRLRFERRNSESSDIQSVEKSEHKGVQGSGLNGHILTWNTHRK 805
P R F + +++ ++ ++E + SG I W HR+
Sbjct: 1705 -EKP-RFMFNIADGGFTELHTLWQNEERAAISSGKLNEI--W--HRR 1745
Score = 41 (19.5 bits), Expect = 5.8e-102, Sum P(3) = 5.8e-102
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 631 EERRQKENYRSRLMEDHEV-PE-WAYSAPDNKEEQK-GFEKGFGHESSSITGKRKRKEVV 687
EE + +E R + ++ V P+ W + E+Q+ + G GKR RK+V
Sbjct: 1295 EEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK------GKRVRKQVN 1348
Query: 688 YADTLSDLQ 696
Y D + Q
Sbjct: 1349 YNDAAQEDQ 1357
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
Identities = 238/576 (41%), Positives = 335/576 (58%)
Query: 110 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVI 169
L G LR+YQLEG+ W++ F+ IL DEMGLGKT QTIAL+ YL+ GP +I
Sbjct: 35 LTGIRLRSYQLEGVNWLVQCFHGQNGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLI 94
Query: 170 VAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD 229
+ P +VL NW E +AP ++ V Y G +ER +++ E G F+VL+T Y++ ++D
Sbjct: 95 LCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARRQQDLRQESG-FHVLLTTYEICLKD 153
Query: 230 RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNF 289
+LK W + VDE HRLKN L +T+S + + RLLLTGTPIQNSLQEL+SLL+
Sbjct: 154 ASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTPIQNSLQELYSLLSV 213
Query: 290 LLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYL 349
+ P +F E E++ ++D + + + E LH ++RPF+LRR K +V L
Sbjct: 214 VEPDLFCR-EQVEDFVQC-YQDIEKESKSASE-------LHRLLRPFLLRRVKAQVATEL 264
Query: 350 PGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVG 409
P K++V++ MSA QK YY+ + + T K LQN+ QLRKC +HPYLF G
Sbjct: 265 PKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNVLTQLRKCVDHPYLFDG 324
Query: 410 -EYNMWRK-EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKF 467
E + E +I ASGK LLDRLL L GHRVLLFSQMT ++DIL+ Y+ + +
Sbjct: 325 VEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSY 384
Query: 468 LRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMD 527
R+DGS + EER +K F P F+FLLSTRAGG+G+NL ADTVI DSD+NPQ D
Sbjct: 385 ERVDGSVRGEERHLAIKNFGK--QPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQND 442
Query: 528 QQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFN--TTSTAQ 585
QA RAHRIGQ K V+V L+ ++EE++ +A K+ + VI+ G F A
Sbjct: 443 LQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEGGHFTLGAQKPAA 502
Query: 586 DRREMLKEIMRRGT----SSLGTDVPSEREINRLAARSDEEFWLFEKMD-----EERRQK 636
+ L EI++ G SS G+ + E ++ + + + W + + E R Q+
Sbjct: 503 EADLQLSEILKFGLDKLLSSEGSSM-DEIDLKSILGETKDGQWTPDALPAAAEGESREQE 561
Query: 637 EN--YRSRLMEDHE-VPEWA-YSAPDNKEEQKGFEK 668
E S E+H + E YS +KE++K FE+
Sbjct: 562 EGSELNSYGKENHMYLFEGRDYSKEPSKEDRKSFEQ 597
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 1003 (358.1 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
Identities = 255/687 (37%), Positives = 380/687 (55%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQ+EGL W+ + + ILADEMGLGKT+QT A+ Y L +G + GP ++
Sbjct: 723 GGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEGHSKGPFLVS 781
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP + V Y G D R +RE FS E RG
Sbjct: 782 APLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEA 841
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D L + W +IVDE HRLKN++ + ++GY +Q +LLLT
Sbjct: 842 SVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 901
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P F+++E F E F D + E+Q I++LH +
Sbjct: 902 GTPLQNNLEELFHLLNFLTPERFHNLEGFLE----EFAD-----IAKEDQ---IKKLHDM 949
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L+ G G SL
Sbjct: 950 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLL 1009
Query: 392 NLSMQLRKCCNHPYLF-VGEYN-------MWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V M+ +IRASGK LL ++L L++ GHRV
Sbjct: 1010 NVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRV 1069
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1070 LIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAG 1129
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1130 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1189
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEF 623
+KM + V++ GL + T + ++ L +I++ GT L D ++ +
Sbjct: 1190 KKMMLTHLVVRPGLGSKTGSMS--KQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVI 1247
Query: 624 WLFEKMDE---ERRQKENYRSRLMEDHE-VPEWAYSAPDNKEEQKGFEKGFGHESSSITG 679
+K E +R Q E + L +E + + + +EE+ G E+ E
Sbjct: 1248 HYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREII---- 1303
Query: 680 KRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLPSEGNESASNSTGAEKKN 738
K++E V D L + +D+++ +GKR R+ + N+ + +
Sbjct: 1304 --KQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQV--NYNDGSQEDRDWQDDQ 1359
Query: 739 LDMKNEIFPLASEGTSE-DTFGSAPKR 764
D +++ + EG + D AP+R
Sbjct: 1360 SDNQSDYSVASEEGDEDFDERSEAPRR 1386
Score = 48 (22.0 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 721 PSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQS- 779
P+E ++ E+++++ + E+ A E T E T AP E+ E +++
Sbjct: 1559 PAEDGIKIEENSLKEEESVEGEKEVKSTAPEATVECTQPPAPAS-EDEKVLVEPPEVEEK 1617
Query: 780 VEKSEHK 786
VEK+E K
Sbjct: 1618 VEKAEVK 1624
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 1003 (358.1 bits), Expect = 1.2e-101, Sum P(2) = 1.2e-101
Identities = 255/687 (37%), Positives = 380/687 (55%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQ+EGL W+ + + ILADEMGLGKT+QT A+ Y L +G + GP ++
Sbjct: 743 GGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEGHSKGPFLVS 801
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP + V Y G D R +RE FS E RG
Sbjct: 802 APLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEA 861
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D L + W +IVDE HRLKN++ + ++GY +Q +LLLT
Sbjct: 862 SVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 921
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P F+++E F E F D + E+Q I++LH +
Sbjct: 922 GTPLQNNLEELFHLLNFLTPERFHNLEGFLE----EFAD-----IAKEDQ---IKKLHDM 969
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L+ G G SL
Sbjct: 970 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLL 1029
Query: 392 NLSMQLRKCCNHPYLF-VGEYN-------MWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V M+ +IRASGK LL ++L L++ GHRV
Sbjct: 1030 NVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRV 1089
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1090 LIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAG 1149
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1150 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1209
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEF 623
+KM + V++ GL + T + ++ L +I++ GT L D ++ +
Sbjct: 1210 KKMMLTHLVVRPGLGSKTGSMS--KQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVI 1267
Query: 624 WLFEKMDE---ERRQKENYRSRLMEDHE-VPEWAYSAPDNKEEQKGFEKGFGHESSSITG 679
+K E +R Q E + L +E + + + +EE+ G E+ E
Sbjct: 1268 HYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREII---- 1323
Query: 680 KRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLPSEGNESASNSTGAEKKN 738
K++E V D L + +D+++ +GKR R+ + N+ + +
Sbjct: 1324 --KQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQV--NYNDGSQEDRDWQDDQ 1379
Query: 739 LDMKNEIFPLASEGTSE-DTFGSAPKR 764
D +++ + EG + D AP+R
Sbjct: 1380 SDNQSDYSVASEEGDEDFDERSEAPRR 1406
Score = 48 (22.0 bits), Expect = 1.2e-101, Sum P(2) = 1.2e-101
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 721 PSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQS- 779
P+E ++ E+++++ + E+ A E T E T AP E+ E +++
Sbjct: 1579 PAEDGIKIEENSLKEEESVEGEKEVKSTAPEATVECTQPPAPAS-EDEKVLVEPPEVEEK 1637
Query: 780 VEKSEHK 786
VEK+E K
Sbjct: 1638 VEKAEVK 1644
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 643 (231.4 bits), Expect = 1.2e-101, Sum P(2) = 1.2e-101
Identities = 131/315 (41%), Positives = 203/315 (64%)
Query: 106 QPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTG 165
QPT+L +L+ YQL+GL W+++L+ +NGILADEMGLGKTIQ+I+++AYL E + G
Sbjct: 790 QPTMLTA-KLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWG 848
Query: 166 PHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEF------FSERGRFNVL 219
P +++AP + L NW E + + P+I + Y G +RK +R+ + +++ F+VL
Sbjct: 849 PFLVIAPASTLHNWQQEITKFVPNIKVLPYWGNAKDRKILRKFWDRKHITYTKESEFHVL 908
Query: 220 ITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNS 279
+T Y L++ D QY +KV+W YMI+DE +K+ + + K++ G+ + RLLLTGTPIQN+
Sbjct: 909 VTSYQLVVLDAQYFQKVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNN 968
Query: 280 LQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQV-ALTDEEQLLIIRRLHHVIRPFIL 338
+QELW+LL+F++PT+F+S + F EWF+ + Q +E+QL RRLH +++PF+L
Sbjct: 969 MQELWALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQL---RRLHMILKPFML 1025
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTD-VGRVGL--DTGTGK---SKSLQN 392
RR K V++ L K + + CD++ Q+ Y + + V + L G S +L N
Sbjct: 1026 RRVKKHVQQELGDKVEKDVFCDLTYRQRALYTNLRNRVSIMDLIEKAAVGDETDSTTLMN 1085
Query: 393 LSMQLRKCCNHPYLF 407
L MQ RK CNHP LF
Sbjct: 1086 LVMQFRKVCNHPDLF 1100
Score = 410 (149.4 bits), Expect = 1.2e-101, Sum P(2) = 1.2e-101
Identities = 99/230 (43%), Positives = 135/230 (58%)
Query: 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTL 482
SGK LD LL +L+ GHRVLL+ QMTR++D++E YL ++K+ RLDGSTK E+R
Sbjct: 1320 SGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDT 1379
Query: 483 LKQFNA-PDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKK 541
+ F PD F+FLLSTRAGGLG+NL ADTVI +DSDWNP +D QA DRAHR+GQ +
Sbjct: 1380 VADFQQRPD--IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTR 1437
Query: 542 EVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTS-TAQDRREMLKEIMRRGTS 600
+V V+ L++ +IEE I +RA QK + VI G ++R K+I
Sbjct: 1438 QVTVYRLITRSTIEERIRKRALQKEEVQRVVISGGAAGGVDFNTRNRDSKTKDIAMWLAD 1497
Query: 601 SLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMED--HE 648
++ ++E R A E F K ++ QK R ++D HE
Sbjct: 1498 DEQAELIEQKE--REALERGETFGA-SKGGKKNAQKRK-RDVTLDDMYHE 1543
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 991 (353.9 bits), Expect = 1.6e-101, Sum P(2) = 1.6e-101
Identities = 225/522 (43%), Positives = 323/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKT+QTI + Y L +G + GP+++
Sbjct: 695 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFL-YSLYKEGHSKGPYLVS 753
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP V Y G + R +RE FS E RG
Sbjct: 754 APLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRGGKKVFRMKKEV 813
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++ Y+I +LLLT
Sbjct: 814 QIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLT 873
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 874 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 921
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 922 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLL 981
Query: 392 NLSMQLRKCCNHPYLF-VG--EYNM-----WRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V E M + ++++SGK LL ++L KLR GHRV
Sbjct: 982 NIMMDLKKCCNHPYLFPVAAVEAPMLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRV 1041
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1042 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAG 1101
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1102 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1161
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + S + ++E L +I++ GT L D
Sbjct: 1162 RKMMLTHLVVRPGL-GSKSGSMTKQE-LDDILKFGTEELFKD 1201
Score = 59 (25.8 bits), Expect = 1.6e-101, Sum P(2) = 1.6e-101
Identities = 22/92 (23%), Positives = 41/92 (44%)
Query: 679 GKRKRKEVVYAD-TLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKK 737
GKR RK+V Y D + D +W + + Q + + + ++ +S + + K
Sbjct: 1340 GKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQSRRQLK 1399
Query: 738 NLDMKNEIFPL-ASEGTSEDTFG-SAPKRLRF 767
+ D + PL A G + + G +A +R F
Sbjct: 1400 S-DRDKPLPPLLARVGGNIEVLGFNARQRKAF 1430
Score = 41 (19.5 bits), Expect = 1.3e-99, Sum P(2) = 1.3e-99
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 634 RQKENYRSRLMEDHEVPEWAYSAPDNKEE 662
R++ NY ED E W DN+ E
Sbjct: 1344 RKQVNYNDASQEDQE---WQDELSDNQSE 1369
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 986 (352.1 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
Identities = 236/587 (40%), Positives = 334/587 (56%)
Query: 105 EQPTLLQGG----ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
++P L Q G LR+YQLEG+ W++ F+ IL DEMGLGKT QTIAL+ YL+
Sbjct: 26 QEPDLQQWGLTGIRLRSYQLEGVNWLVQCFHCQNGCILGDEMGLGKTCQTIALLIYLVGR 85
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLI 220
GP +++ P +VL NW E +AP ++ V Y G +ER ++++ E G F+VL+
Sbjct: 86 LNDEGPFLVLCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARLQQDLRQESG-FHVLL 144
Query: 221 THYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSL 280
T Y++ ++D +LK W + VDE HRLKN L +T+S + RLLLTGTPIQNSL
Sbjct: 145 TTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNSL 204
Query: 281 QELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340
+EL+SLL + P +F E E+ F ++D E++ LH +++PF+LRR
Sbjct: 205 RELYSLLCVVEPDLFCR-EQVED-FVQRYQDI-------EKESKSASELHRLLQPFLLRR 255
Query: 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKC 400
K +V LP K++V++ MSA QK YY+ + + T K LQN+ QLRKC
Sbjct: 256 VKAQVATELPKKTEVVVYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNILTQLRKC 315
Query: 401 CNHPYLFVG-EYNMWRK-EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEI 458
+HPYLF G E + E +I ASGK LLDRLL L GHRVLLFSQMT ++DIL+
Sbjct: 316 VDHPYLFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQD 375
Query: 459 YLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIF 518
Y+ + + R+DGS + EER +K F + P F+FLLSTRAGG+G+NL ADTVI
Sbjct: 376 YMDYRGYSYERVDGSVRGEERHLAIKNFG--NQPIFVFLLSTRAGGVGMNLTAADTVIFV 433
Query: 519 DSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 578
DSD+NPQ D QA RAHRIGQ K V+V L+ ++EE++ +A K+ + VI+ G F
Sbjct: 434 DSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEGGHF 493
Query: 579 NTTSTAQDRRE---MLKEIMRRGTSSLGTDVPSERE---INRLAARSDEEFWLFEKMDE- 631
T + E L EI++ G L + S E + + + + W + +
Sbjct: 494 -TPGAQKPSAEADFQLSEILKFGLDKLLSSEGSSMEDIDLKSILGETKDGQWTPDALPAA 552
Query: 632 --------ERRQKENYRSRLMEDHE-VPEWA-YSAPDNKEEQKGFEK 668
E + SR E+H + E YS +KE++K FE+
Sbjct: 553 AAAGGGSLEPEEGSELESRSYENHMYLFEGRDYSKEPSKEDRKSFEQ 599
Score = 40 (19.1 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 607 PSEREINRLAARSDEEFWLFEKMDEERRQKEN--YRSRLM--EDHEVPEWAYSAPDNK-E 661
P E E +R R + M+E+R++KE +R ++ E + + S+ D++ E
Sbjct: 642 PEELE-DRRKKRQEAAAKRKRLMEEKRKEKEEAEHRKKMAWWESNGYQSFCLSSEDSELE 700
Query: 662 EQKGFEKGFGHESSS 676
+ +G G ESS+
Sbjct: 701 DLEG-----GDESSA 710
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 987 (352.5 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
Identities = 221/522 (42%), Positives = 319/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKT+QTI + Y L +G + GP+++
Sbjct: 629 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFL-YSLYKEGHSKGPYLVS 687
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS------ERGR--------- 215
AP + + NW EF WAP V Y G + R +RE FS G+
Sbjct: 688 APLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEV 747
Query: 216 ---FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++ Y+I +LLLT
Sbjct: 748 QIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLT 807
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 808 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 855
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 856 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLL 915
Query: 392 NLSMQLRKCCNHPYLF--------VGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + ++++SGK LL ++L KLR GHRV
Sbjct: 916 NIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRV 975
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 976 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAG 1035
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1036 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1095
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + S + ++E L +I++ GT L D
Sbjct: 1096 RKMMLTHLVVRPGL-GSKSGSMTKQE-LDDILKFGTEELFKD 1135
Score = 59 (25.8 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
Identities = 22/92 (23%), Positives = 41/92 (44%)
Query: 679 GKRKRKEVVYAD-TLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKK 737
GKR RK+V Y D + D +W + + Q + + + ++ +S + + K
Sbjct: 1274 GKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQSRRQLK 1333
Query: 738 NLDMKNEIFPL-ASEGTSEDTFG-SAPKRLRF 767
+ D + PL A G + + G +A +R F
Sbjct: 1334 S-DRDKPLPPLLARVGGNIEVLGFNARQRKAF 1364
Score = 41 (19.5 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 634 RQKENYRSRLMEDHEVPEWAYSAPDNKEE 662
R++ NY ED E W DN+ E
Sbjct: 1278 RKQVNYNDASQEDQE---WQDELSDNQSE 1303
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 990 (353.6 bits), Expect = 2.0e-101, Sum P(3) = 2.0e-101
Identities = 225/522 (43%), Positives = 320/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKTIQTI + Y L +G T GP ++
Sbjct: 733 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFL-YSLYKEGHTKGPFLVS 791
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP V Y G D R +RE FS E +G
Sbjct: 792 APLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 851
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++GY+I +LLLT
Sbjct: 852 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 911
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 912 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 959
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLL 1019
Query: 392 NLSMQLRKCCNHPYLF-VGEYNM-------WRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + +I++SGK LL ++L KL++ GHRV
Sbjct: 1020 NIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRV 1079
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1080 LIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAG 1139
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVIIFDSDWNP D QA RAHRIGQ +V ++ V+ S+EE I + AK
Sbjct: 1140 GLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAK 1199
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + + + ++E L +I++ GT L D
Sbjct: 1200 RKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILKFGTEELFKD 1239
Score = 45 (20.9 bits), Expect = 2.0e-101, Sum P(3) = 2.0e-101
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 711 STRGKRREYLPSEGNESASN---STGAEKKNLDMKN--EIFP-----LASEGTSEDTFGS 760
ST G+R E P +G E TG K D+K E+ P S G E+ +
Sbjct: 1645 STPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEK--T 1702
Query: 761 APKRLRFERRNSESSDIQSVEKSEHKGVQGSGLNGHILTWNTHRK 805
R F + +++ ++ ++E + SG I W HR+
Sbjct: 1703 EKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEI--W--HRR 1743
Score = 41 (19.5 bits), Expect = 2.0e-101, Sum P(3) = 2.0e-101
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 631 EERRQKENYRSRLMEDHEV-PE-WAYSAPDNKEEQK-GFEKGFGHESSSITGKRKRKEVV 687
EE + +E R + ++ V P+ W + E+Q+ + G GKR RK+V
Sbjct: 1295 EEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK------GKRVRKQVN 1348
Query: 688 YADTLSDLQ 696
Y D + Q
Sbjct: 1349 YNDAAQEDQ 1357
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 993 (354.6 bits), Expect = 2.4e-101, Sum P(3) = 2.4e-101
Identities = 226/522 (43%), Positives = 320/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKTIQTI + Y L +G T GP ++
Sbjct: 731 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFL-YSLYKEGHTKGPFLVS 789
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP V Y G D R +RE FS E +G
Sbjct: 790 APLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 849
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++GY+I +LLLT
Sbjct: 850 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 909
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 910 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 957
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 958 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLL 1017
Query: 392 NLSMQLRKCCNHPYLF-VGEYNM-------WRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + +I+ASGK LL ++L KL++ GHRV
Sbjct: 1018 NIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLKEQGHRV 1077
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1078 LIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAG 1137
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVIIFDSDWNP D QA RAHRIGQ +V ++ V+ S+EE I + AK
Sbjct: 1138 GLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAK 1197
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + + + ++E L +I++ GT L D
Sbjct: 1198 RKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILKFGTEELFKD 1237
Score = 41 (19.5 bits), Expect = 2.4e-101, Sum P(3) = 2.4e-101
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 711 STRGKRREYLPSEGNESASN---STGAEKKNLDMKNE 744
ST G+R E P +G E TG K D+K +
Sbjct: 1642 STPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGD 1678
Score = 41 (19.5 bits), Expect = 2.4e-101, Sum P(3) = 2.4e-101
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 631 EERRQKENYRSRLMEDHEV-PE-WAYSAPDNKEEQK-GFEKGFGHESSSITGKRKRKEVV 687
EE + +E R + ++ V P+ W + E+Q+ + G GKR RK+V
Sbjct: 1293 EEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK------GKRVRKQVN 1346
Query: 688 YADTLSDLQ 696
Y D + Q
Sbjct: 1347 YNDAAQEDQ 1355
Score = 40 (19.1 bits), Expect = 3.1e-101, Sum P(3) = 3.1e-101
Identities = 14/86 (16%), Positives = 36/86 (41%)
Query: 701 VENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGS 760
VEN ++ + + G++ E + + S E + + ++ E+ + E E +
Sbjct: 1574 VENQEEKPEKNRTGEKIETEADAPSPAPSLGERLEPRKISLEEEVPGVPGEMEPEPGYRG 1633
Query: 761 APKRLRFERRNSESSDIQSVEKSEHK 786
++ E E + + ++ EH+
Sbjct: 1634 DREKSATESTPGERGEEKPLDGQEHR 1659
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 990 (353.6 bits), Expect = 2.5e-101, Sum P(3) = 2.5e-101
Identities = 225/522 (43%), Positives = 320/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKTIQTI + Y L +G T GP ++
Sbjct: 792 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFL-YSLYKEGHTKGPFLVS 850
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP V Y G D R +RE FS E +G
Sbjct: 851 APLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 910
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++GY+I +LLLT
Sbjct: 911 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 970
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 971 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 1018
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 1019 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLL 1078
Query: 392 NLSMQLRKCCNHPYLF-VGEYNM-------WRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + +I++SGK LL ++L KL++ GHRV
Sbjct: 1079 NIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRV 1138
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1139 LIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAG 1198
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVIIFDSDWNP D QA RAHRIGQ +V ++ V+ S+EE I + AK
Sbjct: 1199 GLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAK 1258
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + + + ++E L +I++ GT L D
Sbjct: 1259 RKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILKFGTEELFKD 1298
Score = 45 (20.9 bits), Expect = 2.5e-101, Sum P(3) = 2.5e-101
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 711 STRGKRREYLPSEGNESASN---STGAEKKNLDMKN--EIFP-----LASEGTSEDTFGS 760
ST G+R E P +G E TG K D+K E+ P S G E+ +
Sbjct: 1704 STPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEK--T 1761
Query: 761 APKRLRFERRNSESSDIQSVEKSEHKGVQGSGLNGHILTWNTHRK 805
R F + +++ ++ ++E + SG I W HR+
Sbjct: 1762 EKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEI--W--HRR 1802
Score = 41 (19.5 bits), Expect = 2.5e-101, Sum P(3) = 2.5e-101
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 631 EERRQKENYRSRLMEDHEV-PE-WAYSAPDNKEEQK-GFEKGFGHESSSITGKRKRKEVV 687
EE + +E R + ++ V P+ W + E+Q+ + G GKR RK+V
Sbjct: 1354 EEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK------GKRVRKQVN 1407
Query: 688 YADTLSDLQ 696
Y D + Q
Sbjct: 1408 YNDAAQEDQ 1416
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 987 (352.5 bits), Expect = 2.7e-101, Sum P(2) = 2.7e-101
Identities = 221/522 (42%), Positives = 319/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKT+QTI + Y L +G + GP+++
Sbjct: 560 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFL-YSLYKEGHSKGPYLVS 618
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS------ERGR--------- 215
AP + + NW EF WAP V Y G + R +RE FS G+
Sbjct: 619 APLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEV 678
Query: 216 ---FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++ Y+I +LLLT
Sbjct: 679 QIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLT 738
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 739 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 786
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 787 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLL 846
Query: 392 NLSMQLRKCCNHPYLF--------VGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + ++++SGK LL ++L KLR GHRV
Sbjct: 847 NIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRV 906
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 907 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAG 966
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 967 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1026
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + S + ++E L +I++ GT L D
Sbjct: 1027 RKMMLTHLVVRPGL-GSKSGSMTKQE-LDDILKFGTEELFKD 1066
Score = 59 (25.8 bits), Expect = 2.7e-101, Sum P(2) = 2.7e-101
Identities = 22/92 (23%), Positives = 41/92 (44%)
Query: 679 GKRKRKEVVYAD-TLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKK 737
GKR RK+V Y D + D +W + + Q + + + ++ +S + + K
Sbjct: 1205 GKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQSRRQLK 1264
Query: 738 NLDMKNEIFPL-ASEGTSEDTFG-SAPKRLRF 767
+ D + PL A G + + G +A +R F
Sbjct: 1265 S-DRDKPLPPLLARVGGNIEVLGFNARQRKAF 1295
Score = 41 (19.5 bits), Expect = 2.1e-99, Sum P(2) = 2.1e-99
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 634 RQKENYRSRLMEDHEVPEWAYSAPDNKEE 662
R++ NY ED E W DN+ E
Sbjct: 1209 RKQVNYNDASQEDQE---WQDELSDNQSE 1234
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 627 (225.8 bits), Expect = 4.4e-101, Sum P(2) = 4.4e-101
Identities = 130/316 (41%), Positives = 196/316 (62%)
Query: 106 QPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTG 165
QP +L+ L+ YQL+GL W+ +L+ +NGILADEMGLGKT+Q+I+++AYL E + G
Sbjct: 664 QPNMLKC-TLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAETYNMWG 722
Query: 166 PHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEF------FSERGRFNVL 219
P ++V P + L NW E + + P + Y G +RK +R+ + + + F+VL
Sbjct: 723 PFLVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILRKFWDRKSLRYDKDSPFHVL 782
Query: 220 ITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNS 279
+T Y LI+ D Y +K++W YMI+DE +K+ + K++ + RLLLTGTPIQNS
Sbjct: 783 VTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPIQNS 842
Query: 280 LQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALT-DEEQLLIIRRLHHVIRPFIL 338
+QELW+LL+F++P+IF+S + F +WF + Q + DE+QL RRLH +++PF+L
Sbjct: 843 MQELWALLHFIMPSIFDSHDEFSDWFAKDIESHAQSNTSLDEQQL---RRLHMILKPFML 899
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQV------TDVGRVGLDTG-TGKSKSLQ 391
RR K V+ L K ++ + CD++ QK YQQ+ +D + L++ T SL
Sbjct: 900 RRIKKNVQSELGDKVEIDVYCDLTTRQKKLYQQLRSQISMSDTDLLELESNSTSSDSSLA 959
Query: 392 NLSMQLRKCCNHPYLF 407
NL MQ RK CNHP LF
Sbjct: 960 NLVMQFRKVCNHPDLF 975
Score = 418 (152.2 bits), Expect = 4.4e-101, Sum P(2) = 4.4e-101
Identities = 84/157 (53%), Positives = 111/157 (70%)
Query: 417 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKT 476
+ I SGK LD LL L++ GHR+L++ QMTR+M I E YL +K++RLDGST
Sbjct: 1229 DRFIAESGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTI 1288
Query: 477 EERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHR 536
E R +++ + + F+F+LSTRAGGLGLNL +ADTVI +DSDWNP +D QA DRAHR
Sbjct: 1289 ESRREMVQAWQT-NPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHR 1347
Query: 537 IGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVI 573
IGQ K+V+VF LV+ +IE+ ILERAK+K I V+
Sbjct: 1348 IGQTKQVKVFRLVTRNTIEQKILERAKEKEEIQKLVV 1384
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 1014 (362.0 bits), Expect = 4.5e-101, P = 4.5e-101
Identities = 265/731 (36%), Positives = 401/731 (54%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKT+QT A+ Y L +G + GP ++
Sbjct: 733 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEGHSKGPFLVS 791
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE----RG----------- 214
AP + + NW EF WAP + V Y G D R +RE EF E RG
Sbjct: 792 APLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFTFEDNAIRGGKKASKMKKEA 851
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D+ L + W ++VDE HRLKN++ + ++ Y +Q +LLLT
Sbjct: 852 AVKFHVLLTSYELITIDQAILGSIDWACLVVDEAHRLKNNQSKFFRVLNNYPLQHKLLLT 911
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D + E+Q I++LH +
Sbjct: 912 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----IAKEDQ---IKKLHDM 959
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K++P K+++I++ ++S QK YY+ + L+T G G SL
Sbjct: 960 LGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKYILTRNFEALNTRGGGNQVSLL 1019
Query: 392 NLSMQLRKCCNHPYLF---VGEY-----NMWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF E M+ + +ASGK LL ++L KL++ GHRV
Sbjct: 1020 NVVMDLKKCCNHPYLFPTAATEAPKMPNGMYDGSALTKASGKLMLLFKMLKKLKEGGHRV 1079
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP +P F+FLLSTRAG
Sbjct: 1080 LIFSQMTKMLDLLEDFLENEGYKYERIDGGVTGGMRQEAIDRFNAPGAPQFVFLLSTRAG 1139
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1140 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQVAK 1199
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSD 620
+KM + V++ GL + + + ++E L +I++ GT L D E +E + D
Sbjct: 1200 KKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILKFGTEQLFKDELGEGDNKEEDSSVIHYD 1257
Query: 621 EEFWLFEKMDEERRQKENYRSRLMEDH--EVPEWAYSAPDNKEEQKGFEKGFGHESSSIT 678
++ + +D + E+ + M ++ Y D EE++ ++ I
Sbjct: 1258 DKA-IDRLLDRNQDATEDTELQSMNEYLSSFKVAQYVVKDEDEEEEDVDR-------EII 1309
Query: 679 GKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKN 738
K++E V D L + +D+++ +GKR P N+ + G+ +
Sbjct: 1310 ---KQEESVDPDYWEKLLRHHYEQQQEDLARHLGKGKRPRK-PVNYNDCSQEDRGSRRDW 1365
Query: 739 LDMKNEI---FPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHKGVQGSGLNG 795
D +++ + +ASE ED F + RR S +K + G N
Sbjct: 1366 QDDQSDNQSDYSVASEEGDED-FDERSEAAN-SRRPSRKGLRNDKDKPLPPLLARVGGNI 1423
Query: 796 HILTWNTHRKK 806
+L +N ++K
Sbjct: 1424 EVLGFNARQRK 1434
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 987 (352.5 bits), Expect = 4.5e-101, Sum P(2) = 4.5e-101
Identities = 221/522 (42%), Positives = 319/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKT+QTI + Y L +G + GP+++
Sbjct: 697 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFL-YSLYKEGHSKGPYLVS 755
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS------ERGR--------- 215
AP + + NW EF WAP V Y G + R +RE FS G+
Sbjct: 756 APLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEV 815
Query: 216 ---FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++ Y+I +LLLT
Sbjct: 816 QIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLT 875
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 876 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 923
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 924 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLL 983
Query: 392 NLSMQLRKCCNHPYLF--------VGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + ++++SGK LL ++L KLR GHRV
Sbjct: 984 NIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRV 1043
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1044 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAG 1103
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1104 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1163
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + S + ++E L +I++ GT L D
Sbjct: 1164 RKMMLTHLVVRPGL-GSKSGSMTKQE-LDDILKFGTEELFKD 1203
Score = 59 (25.8 bits), Expect = 4.5e-101, Sum P(2) = 4.5e-101
Identities = 22/92 (23%), Positives = 41/92 (44%)
Query: 679 GKRKRKEVVYAD-TLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKK 737
GKR RK+V Y D + D +W + + Q + + + ++ +S + + K
Sbjct: 1342 GKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQSRRQLK 1401
Query: 738 NLDMKNEIFPL-ASEGTSEDTFG-SAPKRLRF 767
+ D + PL A G + + G +A +R F
Sbjct: 1402 S-DRDKPLPPLLARVGGNIEVLGFNARQRKAF 1432
Score = 41 (19.5 bits), Expect = 3.6e-99, Sum P(2) = 3.6e-99
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 634 RQKENYRSRLMEDHEVPEWAYSAPDNKEE 662
R++ NY ED E W DN+ E
Sbjct: 1346 RKQVNYNDASQEDQE---WQDELSDNQSE 1371
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 679 (244.1 bits), Expect = 7.6e-101, Sum P(2) = 7.6e-101
Identities = 137/304 (45%), Positives = 194/304 (63%)
Query: 104 TEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
T P L++G +LR YQ+ GL WM++L+ NLNGILADEMGLGKTIQTI+L+A++ ++ +
Sbjct: 548 TPVPFLIRG-QLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACSESI 606
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+IV P +V+ NW EF W P++ + Y G ER R+ + F+V IT Y
Sbjct: 607 WGPHLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRKGWMKPNC-FHVCITSY 665
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
+ +D + K+ W Y+I+DE +KN + + + + +RRLLLTGTP+QNSL EL
Sbjct: 666 KTVTQDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMEL 725
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343
WSL++FL+PTIF+S ++F++WF+ P G + E +I RLH V+RPFILRR K
Sbjct: 726 WSLMHFLMPTIFSSHDDFKDWFSNPLT--GMMEGNMEFNAPLIGRLHKVLRPFILRRLKK 783
Query: 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 403
EVEK LP K++ I+ C +S Q+ Y + +G S+ N+ MQLRKCCNH
Sbjct: 784 EVEKQLPEKTEHIVNCSLSKRQRYLYDDFMSRRSTKENLKSGNMMSVLNIVMQLRKCCNH 843
Query: 404 PYLF 407
P LF
Sbjct: 844 PNLF 847
Score = 372 (136.0 bits), Expect = 7.6e-101, Sum P(2) = 7.6e-101
Identities = 81/203 (39%), Positives = 128/203 (63%)
Query: 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 483
GK + L LL +L HR L+F+QM++++D+L+ +L + +++ RLDG+T E+R ++
Sbjct: 1188 GKLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMM 1247
Query: 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543
++FNA D F F+LSTR+GG+G+NL ADTVI +DSDWNP MD QA+DR HRIGQ + V
Sbjct: 1248 ERFNA-DPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNV 1306
Query: 544 RVFVLVSVGSIEEVILERAKQKMGIDAKVI-QAGLFNTTSTAQDR-REML--KEIMRRGT 599
++ L+S +IEE IL +A QK + I +AG D R++ + +
Sbjct: 1307 SIYRLISERTIEENILRKATQKRRLGELAIDEAGFTPEFFKQSDSIRDLFDGENVEVTAV 1366
Query: 600 SSLGTDVPSEREINRLAARSDEE 622
+ + T + SE+E+ A+ ++E
Sbjct: 1367 ADVATTM-SEKEMEVAMAKCEDE 1388
Score = 39 (18.8 bits), Expect = 1.0e-65, Sum P(2) = 1.0e-65
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 519 DSDWNPQMDQQAEDRAHRIGQKKEVRV 545
D+D++ +M+ D + I Q E R+
Sbjct: 1534 DADFDLRMEDDCLDLMYEIEQMNEARL 1560
Score = 37 (18.1 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 519 DSDWNPQMDQQAEDRAHRIGQKKE 542
++ + P+ +++ ++ I QK+E
Sbjct: 1448 ETQYKPEFEEECKEAEALIDQKRE 1471
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 1003 (358.1 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 255/687 (37%), Positives = 380/687 (55%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQ+EGL W+ + + ILADEMGLGKT+QT A+ Y L +G + GP ++
Sbjct: 716 GGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEGHSKGPFLVS 774
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP + V Y G D R +RE FS E RG
Sbjct: 775 APLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEA 834
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D L + W +IVDE HRLKN++ + ++GY +Q +LLLT
Sbjct: 835 SVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 894
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P F+++E F E F D + E+Q I++LH +
Sbjct: 895 GTPLQNNLEELFHLLNFLTPERFHNLEGFLE----EFAD-----IAKEDQ---IKKLHDM 942
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L+ G G SL
Sbjct: 943 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLL 1002
Query: 392 NLSMQLRKCCNHPYLF-VGEYN-------MWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V M+ +IRASGK LL ++L L++ GHRV
Sbjct: 1003 NVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRV 1062
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1063 LIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAG 1122
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1123 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1182
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEF 623
+KM + V++ GL + T + ++ L +I++ GT L D ++ +
Sbjct: 1183 KKMMLTHLVVRPGLGSKTGSMS--KQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVI 1240
Query: 624 WLFEKMDE---ERRQKENYRSRLMEDHE-VPEWAYSAPDNKEEQKGFEKGFGHESSSITG 679
+K E +R Q E + L +E + + + +EE+ G E+ E
Sbjct: 1241 HYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREII---- 1296
Query: 680 KRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLPSEGNESASNSTGAEKKN 738
K++E V D L + +D+++ +GKR R+ + N+ + +
Sbjct: 1297 --KQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQV--NYNDGSQEDRDWQDDQ 1352
Query: 739 LDMKNEIFPLASEGTSE-DTFGSAPKR 764
D +++ + EG + D AP+R
Sbjct: 1353 SDNQSDYSVASEEGDEDFDERSEAPRR 1379
Score = 38 (18.4 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 721 PSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSD-IQS 779
P+E ++ E+++++ + E+ A E E T AP E+ E + +
Sbjct: 1552 PAEDGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQAPAPAS-EDEKVVVEPPEGEEK 1610
Query: 780 VEKSEHK 786
VEK+E K
Sbjct: 1611 VEKAEVK 1617
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 1003 (358.1 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 255/687 (37%), Positives = 380/687 (55%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQ+EGL W+ + + ILADEMGLGKT+QT A+ Y L +G + GP ++
Sbjct: 723 GGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEGHSKGPFLVS 781
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP + V Y G D R +RE FS E RG
Sbjct: 782 APLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEA 841
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D L + W +IVDE HRLKN++ + ++GY +Q +LLLT
Sbjct: 842 SVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 901
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P F+++E F E F D + E+Q I++LH +
Sbjct: 902 GTPLQNNLEELFHLLNFLTPERFHNLEGFLE----EFAD-----IAKEDQ---IKKLHDM 949
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L+ G G SL
Sbjct: 950 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLL 1009
Query: 392 NLSMQLRKCCNHPYLF-VGEYN-------MWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V M+ +IRASGK LL ++L L++ GHRV
Sbjct: 1010 NVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRV 1069
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1070 LIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAG 1129
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1130 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1189
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEF 623
+KM + V++ GL + T + ++ L +I++ GT L D ++ +
Sbjct: 1190 KKMMLTHLVVRPGLGSKTGSMS--KQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVI 1247
Query: 624 WLFEKMDE---ERRQKENYRSRLMEDHE-VPEWAYSAPDNKEEQKGFEKGFGHESSSITG 679
+K E +R Q E + L +E + + + +EE+ G E+ E
Sbjct: 1248 HYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREII---- 1303
Query: 680 KRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLPSEGNESASNSTGAEKKN 738
K++E V D L + +D+++ +GKR R+ + N+ + +
Sbjct: 1304 --KQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQV--NYNDGSQEDRDWQDDQ 1359
Query: 739 LDMKNEIFPLASEGTSE-DTFGSAPKR 764
D +++ + EG + D AP+R
Sbjct: 1360 SDNQSDYSVASEEGDEDFDERSEAPRR 1386
Score = 38 (18.4 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 721 PSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSD-IQS 779
P+E ++ E+++++ + E+ A E E T AP E+ E + +
Sbjct: 1559 PAEDGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQAPAPAS-EDEKVVVEPPEGEEK 1617
Query: 780 VEKSEHK 786
VEK+E K
Sbjct: 1618 VEKAEVK 1624
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 1003 (358.1 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 255/687 (37%), Positives = 380/687 (55%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQ+EGL W+ + + ILADEMGLGKT+QT A+ Y L +G + GP ++
Sbjct: 716 GGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEGHSKGPFLVS 774
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP + V Y G D R +RE FS E RG
Sbjct: 775 APLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEA 834
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D L + W +IVDE HRLKN++ + ++GY +Q +LLLT
Sbjct: 835 SVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 894
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P F+++E F E F D + E+Q I++LH +
Sbjct: 895 GTPLQNNLEELFHLLNFLTPERFHNLEGFLE----EFAD-----IAKEDQ---IKKLHDM 942
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L+ G G SL
Sbjct: 943 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLL 1002
Query: 392 NLSMQLRKCCNHPYLF-VGEYN-------MWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V M+ +IRASGK LL ++L L++ GHRV
Sbjct: 1003 NVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRV 1062
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1063 LIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAG 1122
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1123 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1182
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEF 623
+KM + V++ GL + T + ++ L +I++ GT L D ++ +
Sbjct: 1183 KKMMLTHLVVRPGLGSKTGSMS--KQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVI 1240
Query: 624 WLFEKMDE---ERRQKENYRSRLMEDHE-VPEWAYSAPDNKEEQKGFEKGFGHESSSITG 679
+K E +R Q E + L +E + + + +EE+ G E+ E
Sbjct: 1241 HYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREII---- 1296
Query: 680 KRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLPSEGNESASNSTGAEKKN 738
K++E V D L + +D+++ +GKR R+ + N+ + +
Sbjct: 1297 --KQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQV--NYNDGSQEDRDWQDDQ 1352
Query: 739 LDMKNEIFPLASEGTSE-DTFGSAPKR 764
D +++ + EG + D AP+R
Sbjct: 1353 SDNQSDYSVASEEGDEDFDERSEAPRR 1379
Score = 38 (18.4 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 721 PSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAP 762
P+E ++ E+++ + + E+ P A E T E AP
Sbjct: 1552 PAEDGIKIEENSLKEEESTEGEKEVKPTAPEVTVECAQPPAP 1593
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 989 (353.2 bits), Expect = 1.4e-100, Sum P(3) = 1.4e-100
Identities = 225/522 (43%), Positives = 320/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKTIQTI + Y L +G T GP ++
Sbjct: 784 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFL-YSLYKEGHTKGPFLVS 842
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP V Y G D R +RE FS E +G
Sbjct: 843 APLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 902
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++GY+I +LLLT
Sbjct: 903 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 962
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 963 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 1010
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 1011 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLL 1070
Query: 392 NLSMQLRKCCNHPYLF-VGEYNM-------WRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + +I++SGK LL ++L KL++ GHRV
Sbjct: 1071 NIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLKEQGHRV 1130
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1131 LIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAG 1190
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVIIFDSDWNP D QA RAHRIGQ +V ++ V+ S+EE I + AK
Sbjct: 1191 GLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAK 1250
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + + + ++E L +I++ GT L D
Sbjct: 1251 RKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILKFGTEELFKD 1290
Score = 41 (19.5 bits), Expect = 1.4e-100, Sum P(3) = 1.4e-100
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 631 EERRQKENYRSRLMEDHEV-PE-WAYSAPDNKEEQK-GFEKGFGHESSSITGKRKRKEVV 687
EE + +E R + ++ V P+ W + E+Q+ + G GKR RK+V
Sbjct: 1346 EEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK------GKRVRKQVN 1399
Query: 688 YADTLSDLQ 696
Y D + Q
Sbjct: 1400 YNDAAQEDQ 1408
Score = 39 (18.8 bits), Expect = 1.4e-100, Sum P(3) = 1.4e-100
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 712 TRGKRREYLPSEGNESASNSTGAEKKNLDMKNEI 745
T G+R E P +G E + G E +L + ++
Sbjct: 1697 TPGERGEEKPLDGQEHRERTEG-ETGDLGKREDV 1729
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 1003 (358.1 bits), Expect = 1.4e-100, Sum P(2) = 1.4e-100
Identities = 255/687 (37%), Positives = 380/687 (55%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQ+EGL W+ + + ILADEMGLGKT+QT A+ Y L +G + GP ++
Sbjct: 744 GGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEGHSKGPFLVS 802
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP + V Y G D R +RE FS E RG
Sbjct: 803 APLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEA 862
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D L + W +IVDE HRLKN++ + ++GY +Q +LLLT
Sbjct: 863 SVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 922
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P F+++E F E F D + E+Q I++LH +
Sbjct: 923 GTPLQNNLEELFHLLNFLTPERFHNLEGFLE----EFAD-----IAKEDQ---IKKLHDM 970
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L+ G G SL
Sbjct: 971 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLL 1030
Query: 392 NLSMQLRKCCNHPYLF-VGEYN-------MWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V M+ +IRASGK LL ++L L++ GHRV
Sbjct: 1031 NVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRV 1090
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1091 LIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAG 1150
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1151 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1210
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEF 623
+KM + V++ GL + T + ++ L +I++ GT L D ++ +
Sbjct: 1211 KKMMLTHLVVRPGLGSKTGSMS--KQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVI 1268
Query: 624 WLFEKMDE---ERRQKENYRSRLMEDHE-VPEWAYSAPDNKEEQKGFEKGFGHESSSITG 679
+K E +R Q E + L +E + + + +EE+ G E+ E
Sbjct: 1269 HYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREII---- 1324
Query: 680 KRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLPSEGNESASNSTGAEKKN 738
K++E V D L + +D+++ +GKR R+ + N+ + +
Sbjct: 1325 --KQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQV--NYNDGSQEDRDWQDDQ 1380
Query: 739 LDMKNEIFPLASEGTSE-DTFGSAPKR 764
D +++ + EG + D AP+R
Sbjct: 1381 SDNQSDYSVASEEGDEDFDERSEAPRR 1407
Score = 38 (18.4 bits), Expect = 1.4e-100, Sum P(2) = 1.4e-100
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 721 PSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAP 762
P+E ++ E+++ + + E+ P A E T E AP
Sbjct: 1580 PAEDGIKIEENSLKEEESTEGEKEVKPTAPEVTVECAQPPAP 1621
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 1001 (357.4 bits), Expect = 1.9e-100, Sum P(2) = 1.9e-100
Identities = 259/705 (36%), Positives = 385/705 (54%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171
GG+L YQLEGL W+ ++N + ILADEMGLGKT+Q++ + L++ GP +I A
Sbjct: 599 GGKLHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQSLTFLYSLMKEGHCKGPFLIAA 658
Query: 172 PKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS------------------ER 213
P + + NW E W P V Y G D R +RE FS E
Sbjct: 659 PLSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKASKMKTTEN 718
Query: 214 GRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTG 273
+F+VL+T Y+ I D+ L ++W ++VDE HRLKN++ K ++ Y I R+LLTG
Sbjct: 719 MKFHVLLTSYETINMDKTILSSIEWGALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTG 778
Query: 274 TPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVI 333
TP+QN+L+EL+ LLNFL FN +E F FN ++ E+Q I +LH+++
Sbjct: 779 TPLQNNLEELFHLLNFLSKERFNQLEAFTAEFNE---------ISKEDQ---IEKLHNLL 826
Query: 334 RPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSK-SLQN 392
P +LRR K +V +P KS++I++ ++SA QK +Y+ + L+ G ++ SL N
Sbjct: 827 GPHMLRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNILTRNFDALNVKNGGTQMSLMN 886
Query: 393 LSMQLRKCCNHPYLFVG-------EYN-MWRKEEIIRASGKFELLDRLLPKLRKSGHRVL 444
+ M+L+KCCNHPYLFV E N M+ +I+ SGKF LL ++L KL+ GHRVL
Sbjct: 887 VLMELKKCCNHPYLFVKAELEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDGGHRVL 946
Query: 445 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504
+FSQMTR++DI+E + +++ R+DGS + R + ++NAP + F+FLLSTRAGG
Sbjct: 947 IFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGG 1006
Query: 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564
LG+NL TADTVII+DSDWNP D QA RAHR+GQK +V ++ V+ S+EE I AK+
Sbjct: 1007 LGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKK 1066
Query: 565 KMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSL-GTDVPS-ERE-INRLAARSDE 621
KM ++ V++AGL + E L +++R GT L D+ + E E + A + E
Sbjct: 1067 KMLLNHLVVRAGLGGKEGKTMSKTE-LDDVLRWGTEELFSEDLDAAEGEGSEKKGAAAQE 1125
Query: 622 EFWLFEKMDE--ERRQKENYRSRLMED-HEVPEWAYS-------APDNKEEQKGFEKGFG 671
W +D +R KE + ED E EW A +E +G E+
Sbjct: 1126 IVWDDAAVDALLDRSNKEETPAG--EDGEEKAEWQNEYLSSFKVASYQTKETEGQEEEEE 1183
Query: 672 HESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLP-SEGNESAS 729
E+ I K + Y + L L+ + ++ KL +GKR R+ + + N
Sbjct: 1184 EETEVIKEDEKEPDPDYWEKL--LKHHYEQDREIELQKLG-KGKRVRKQINYASENMGTD 1240
Query: 730 NSTGAEKKNLDMKNEIFPLASEG----TSEDTFGSAPKRLRFERR 770
S + ++ D NE + + G + ED + KR R E +
Sbjct: 1241 WSKQNQTQDDDDDNESYRGSDNGDGLNSDEDDYDEKKKRRRDEEK 1285
Score = 37 (18.1 bits), Expect = 1.9e-100, Sum P(2) = 1.9e-100
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 740 DMKNEIFPLASEGTSEDTFGSAPK 763
++++E+ A+ G+++ + S PK
Sbjct: 1406 EIQDEVLAKAANGSAQGSSRSTPK 1429
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 1001 (357.4 bits), Expect = 1.9e-100, Sum P(2) = 1.9e-100
Identities = 259/705 (36%), Positives = 385/705 (54%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171
GG+L YQLEGL W+ ++N + ILADEMGLGKT+Q++ + L++ GP +I A
Sbjct: 599 GGKLHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQSLTFLYSLMKEGHCKGPFLIAA 658
Query: 172 PKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS------------------ER 213
P + + NW E W P V Y G D R +RE FS E
Sbjct: 659 PLSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKASKMKTTEN 718
Query: 214 GRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTG 273
+F+VL+T Y+ I D+ L ++W ++VDE HRLKN++ K ++ Y I R+LLTG
Sbjct: 719 MKFHVLLTSYETINMDKTILSSIEWGALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTG 778
Query: 274 TPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVI 333
TP+QN+L+EL+ LLNFL FN +E F FN ++ E+Q I +LH+++
Sbjct: 779 TPLQNNLEELFHLLNFLSKERFNQLEAFTAEFNE---------ISKEDQ---IEKLHNLL 826
Query: 334 RPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSK-SLQN 392
P +LRR K +V +P KS++I++ ++SA QK +Y+ + L+ G ++ SL N
Sbjct: 827 GPHMLRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNILTRNFDALNVKNGGTQMSLMN 886
Query: 393 LSMQLRKCCNHPYLFVG-------EYN-MWRKEEIIRASGKFELLDRLLPKLRKSGHRVL 444
+ M+L+KCCNHPYLFV E N M+ +I+ SGKF LL ++L KL+ GHRVL
Sbjct: 887 VLMELKKCCNHPYLFVKAELEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDGGHRVL 946
Query: 445 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504
+FSQMTR++DI+E + +++ R+DGS + R + ++NAP + F+FLLSTRAGG
Sbjct: 947 IFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGG 1006
Query: 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564
LG+NL TADTVII+DSDWNP D QA RAHR+GQK +V ++ V+ S+EE I AK+
Sbjct: 1007 LGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKK 1066
Query: 565 KMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSL-GTDVPS-ERE-INRLAARSDE 621
KM ++ V++AGL + E L +++R GT L D+ + E E + A + E
Sbjct: 1067 KMLLNHLVVRAGLGGKEGKTMSKTE-LDDVLRWGTEELFSEDLDAAEGEGSEKKGAAAQE 1125
Query: 622 EFWLFEKMDE--ERRQKENYRSRLMED-HEVPEWAYS-------APDNKEEQKGFEKGFG 671
W +D +R KE + ED E EW A +E +G E+
Sbjct: 1126 IVWDDAAVDALLDRSNKEETPAG--EDGEEKAEWQNEYLSSFKVASYQTKETEGQEEEEE 1183
Query: 672 HESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLP-SEGNESAS 729
E+ I K + Y + L L+ + ++ KL +GKR R+ + + N
Sbjct: 1184 EETEVIKEDEKEPDPDYWEKL--LKHHYEQDREIELQKLG-KGKRVRKQINYASENMGTD 1240
Query: 730 NSTGAEKKNLDMKNEIFPLASEG----TSEDTFGSAPKRLRFERR 770
S + ++ D NE + + G + ED + KR R E +
Sbjct: 1241 WSKQNQTQDDDDDNESYRGSDNGDGLNSDEDDYDEKKKRRRDEEK 1285
Score = 37 (18.1 bits), Expect = 1.9e-100, Sum P(2) = 1.9e-100
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 740 DMKNEIFPLASEGTSEDTFGSAPK 763
++++E+ A+ G+++ + S PK
Sbjct: 1406 EIQDEVLAKAANGSAQGSSRSTPK 1429
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 984 (351.4 bits), Expect = 2.9e-100, Sum P(3) = 2.9e-100
Identities = 225/522 (43%), Positives = 319/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKTIQTI + Y L +G T GP ++
Sbjct: 729 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFL-YSLYKEGHTKGPFLVS 787
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP V Y G D R +RE FS E +G
Sbjct: 788 APLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 847
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++GY+I +LLLT
Sbjct: 848 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 907
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 908 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 955
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 956 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLL 1015
Query: 392 NLSMQLRKCCNHPYLF-VGEYNM-------WRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + +I+ASGK LL ++L KL++ GHRV
Sbjct: 1016 NIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLKEQGHRV 1075
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L +K+ R+DG R + +FNA + F FLLSTRAG
Sbjct: 1076 LIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAHGAQQFCFLLSTRAG 1135
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVIIFDSDWNP D QA RAHRIGQ +V ++ V+ S+EE I + AK
Sbjct: 1136 GLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAK 1195
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + + + ++E L +I++ GT L D
Sbjct: 1196 RKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILKFGTEELFKD 1235
Score = 41 (19.5 bits), Expect = 2.9e-100, Sum P(3) = 2.9e-100
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 631 EERRQKENYRSRLMEDHEV-PE-WAYSAPDNKEEQK-GFEKGFGHESSSITGKRKRKEVV 687
EE + +E R + ++ V P+ W + E+Q+ + G GKR RK+V
Sbjct: 1291 EEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK------GKRVRKQVN 1344
Query: 688 YADTLSDLQ 696
Y D + Q
Sbjct: 1345 YNDAAQEDQ 1353
Score = 40 (19.1 bits), Expect = 2.9e-100, Sum P(3) = 2.9e-100
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 711 STRGKRREYLPSEGNESASNSTGAEKKNLDMKNE 744
ST G+R E P +G E G E +L + E
Sbjct: 1641 STPGERGEEKPMDGQEHRERPEG-ETGDLGKRAE 1673
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 622 (224.0 bits), Expect = 5.6e-100, Sum P(2) = 5.6e-100
Identities = 126/331 (38%), Positives = 202/331 (61%)
Query: 98 SIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYL 157
S+ E EQP +L L+ YQL+GL W+ +L++ +NGILADEMGLGKT+Q+I+++A+L
Sbjct: 690 SLGEITIEQPKIL-ACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHL 748
Query: 158 LENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEF------FS 211
EN + GP ++V P + L NW+NE S + P + Y G ++RK +R+ + ++
Sbjct: 749 AENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILPYWGNANDRKVLRKFWDRKNLRYN 808
Query: 212 ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLL 271
+ F+V++T Y +++ D YL+K++W YMI+DE +K+ + + K + + + RLLL
Sbjct: 809 KNAPFHVMVTSYQMVVTDANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLL 868
Query: 272 TGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHH 331
TGTPIQNS+QELW+LL+F++P++F+S + F EWF+ + + +Q L RRLH
Sbjct: 869 TGTPIQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIESHAEANTKLNQQQL--RRLHM 926
Query: 332 VIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQ----QVTD----VGRVGLDTG 383
+++PF+LRR K V+ L K ++ + CD++ Q YQ Q++ + +
Sbjct: 927 ILKPFMLRRVKKNVQSELGDKIEIDVLCDLTQRQAKLYQVLKSQISTNYDAIENAATNDS 986
Query: 384 T-------GKSKSLQNLSMQLRKCCNHPYLF 407
T G ++L N MQ RK CNHP LF
Sbjct: 987 TSNSASNSGSDQNLINAVMQFRKVCNHPDLF 1017
Score = 414 (150.8 bits), Expect = 5.6e-100, Sum P(2) = 5.6e-100
Identities = 87/199 (43%), Positives = 122/199 (61%)
Query: 407 FVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFK 466
F +M + I S K LD LL KL+ GHRVL++ QMT++MD++E YL +
Sbjct: 1282 FSSNISMPSMDRFITESAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYN 1341
Query: 467 FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQM 526
+RLDGS+K E+R L+ + + F+FLLSTRAGGLG+NL ADTVI +DSDWNP +
Sbjct: 1342 HIRLDGSSKLEDRRDLVHDWQT-NPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTI 1400
Query: 527 DQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQD 586
D QA DRAHR+GQ ++V V+ L+ G+IEE + +RAKQK + V++ +
Sbjct: 1401 DSQAMDRAHRLGQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQEKNIKTIE 1460
Query: 587 RREMLKEIMRRGTSSLGTD 605
E E+ R G+ S+ D
Sbjct: 1461 VGENDSEVTREGSKSISQD 1479
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 1003 (358.1 bits), Expect = 6.3e-100, P = 6.3e-100
Identities = 255/687 (37%), Positives = 380/687 (55%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQ+EGL W+ + + ILADEMGLGKT+QT A+ Y L +G + GP ++
Sbjct: 723 GGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEGHSKGPFLVS 781
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP + V Y G D R +RE FS E RG
Sbjct: 782 APLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEA 841
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D L + W +IVDE HRLKN++ + ++GY +Q +LLLT
Sbjct: 842 SVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 901
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P F+++E F E F D + E+Q I++LH +
Sbjct: 902 GTPLQNNLEELFHLLNFLTPERFHNLEGFLE----EFAD-----IAKEDQ---IKKLHDM 949
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L+ G G SL
Sbjct: 950 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLL 1009
Query: 392 NLSMQLRKCCNHPYLF-VGEYN-------MWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V M+ +IRASGK LL ++L L++ GHRV
Sbjct: 1010 NVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRV 1069
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1070 LIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAG 1129
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1130 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1189
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEF 623
+KM + V++ GL + T + ++ L +I++ GT L D ++ +
Sbjct: 1190 KKMMLTHLVVRPGLGSKTGSMS--KQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVI 1247
Query: 624 WLFEKMDE---ERRQKENYRSRLMEDHE-VPEWAYSAPDNKEEQKGFEKGFGHESSSITG 679
+K E +R Q E + L +E + + + +EE+ G E+ E
Sbjct: 1248 HYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREII---- 1303
Query: 680 KRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLPSEGNESASNSTGAEKKN 738
K++E V D L + +D+++ +GKR R+ + N+ + +
Sbjct: 1304 --KQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQV--NYNDGSQEDRDWQDDQ 1359
Query: 739 LDMKNEIFPLASEGTSE-DTFGSAPKR 764
D +++ + EG + D AP+R
Sbjct: 1360 SDNQSDYSVASEEGDEDFDERSEAPRR 1386
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 1003 (358.1 bits), Expect = 6.4e-100, P = 6.4e-100
Identities = 255/687 (37%), Positives = 380/687 (55%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQ+EGL W+ + + ILADEMGLGKT+QT A+ Y L +G + GP ++
Sbjct: 716 GGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEGHSKGPFLVS 774
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP + V Y G D R +RE FS E RG
Sbjct: 775 APLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEA 834
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D L + W +IVDE HRLKN++ + ++GY +Q +LLLT
Sbjct: 835 SVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 894
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P F+++E F E F D + E+Q I++LH +
Sbjct: 895 GTPLQNNLEELFHLLNFLTPERFHNLEGFLE----EFAD-----IAKEDQ---IKKLHDM 942
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L+ G G SL
Sbjct: 943 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLL 1002
Query: 392 NLSMQLRKCCNHPYLF-VGEYN-------MWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V M+ +IRASGK LL ++L L++ GHRV
Sbjct: 1003 NVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRV 1062
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1063 LIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAG 1122
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1123 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1182
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEF 623
+KM + V++ GL + T + ++ L +I++ GT L D ++ +
Sbjct: 1183 KKMMLTHLVVRPGLGSKTGSMS--KQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVI 1240
Query: 624 WLFEKMDE---ERRQKENYRSRLMEDHE-VPEWAYSAPDNKEEQKGFEKGFGHESSSITG 679
+K E +R Q E + L +E + + + +EE+ G E+ E
Sbjct: 1241 HYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREII---- 1296
Query: 680 KRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLPSEGNESASNSTGAEKKN 738
K++E V D L + +D+++ +GKR R+ + N+ + +
Sbjct: 1297 --KQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQV--NYNDGSQEDRDWQDDQ 1352
Query: 739 LDMKNEIFPLASEGTSE-DTFGSAPKR 764
D +++ + EG + D AP+R
Sbjct: 1353 SDNQSDYSVASEEGDEDFDERSEAPRR 1379
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 1003 (358.1 bits), Expect = 6.6e-100, P = 6.6e-100
Identities = 255/687 (37%), Positives = 380/687 (55%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQ+EGL W+ + + ILADEMGLGKT+QT A+ Y L +G + GP ++
Sbjct: 745 GGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEGHSKGPFLVS 803
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP + V Y G D R +RE FS E RG
Sbjct: 804 APLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEA 863
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D L + W +IVDE HRLKN++ + ++GY +Q +LLLT
Sbjct: 864 SVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 923
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P F+++E F E F D + E+Q I++LH +
Sbjct: 924 GTPLQNNLEELFHLLNFLTPERFHNLEGFLE----EFAD-----IAKEDQ---IKKLHDM 971
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L+ G G SL
Sbjct: 972 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLL 1031
Query: 392 NLSMQLRKCCNHPYLF-VGEYN-------MWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V M+ +IRASGK LL ++L L++ GHRV
Sbjct: 1032 NVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRV 1091
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1092 LIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAG 1151
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1152 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1211
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEF 623
+KM + V++ GL + T + ++ L +I++ GT L D ++ +
Sbjct: 1212 KKMMLTHLVVRPGLGSKTGSMS--KQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVI 1269
Query: 624 WLFEKMDE---ERRQKENYRSRLMEDHE-VPEWAYSAPDNKEEQKGFEKGFGHESSSITG 679
+K E +R Q E + L +E + + + +EE+ G E+ E
Sbjct: 1270 HYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREII---- 1325
Query: 680 KRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLPSEGNESASNSTGAEKKN 738
K++E V D L + +D+++ +GKR R+ + N+ + +
Sbjct: 1326 --KQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQV--NYNDGSQEDRDWQDDQ 1381
Query: 739 LDMKNEIFPLASEGTSE-DTFGSAPKR 764
D +++ + EG + D AP+R
Sbjct: 1382 SDNQSDYSVASEEGDEDFDERSEAPRR 1408
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 233/572 (40%), Positives = 335/572 (58%)
Query: 110 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVI 169
L G LR YQLEG+ W+ F+ IL DEMGLGKT QTIA+ YL GP +I
Sbjct: 43 LTGIHLRPYQLEGVNWLAQCFHYQNGCILGDEMGLGKTCQTIAVFIYLAGRLNDEGPFLI 102
Query: 170 VAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD 229
+ P +VL NW E AP + V Y G +ER ++++ E G F+VL+T Y++ ++D
Sbjct: 103 LCPLSVLSNWKEEMERCAPGLCCVTYAGDKEERAHLQQDLKQESG-FHVLLTTYEICLKD 161
Query: 230 RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNF 289
+LK W ++VDE HRLKN L K++S + + RLLLTGTPIQNSLQEL+SLL+F
Sbjct: 162 ASFLKSFPWSVLVVDEAHRLKNQNSLLHKSLSEFSVAFRLLLTGTPIQNSLQELYSLLSF 221
Query: 290 LLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYL 349
+ P +F S E E+ F ++D + + + E L+ +++PF+LRR K EV L
Sbjct: 222 VEPDLF-SKEEVED-FVQRYEDIEKESESASE-------LYKLLQPFLLRRVKAEVAAEL 272
Query: 350 PGKSQVILKCDMSAWQKVYYQQVT--DVG-RVGLDTGTGKSKSLQNLSMQLRKCCNHPYL 406
P K++V++ MSA QK YY+ + D+ + K LQN+ QLRKC +HPYL
Sbjct: 273 PKKTEVVIYHGMSALQKKYYKAILMKDLEISDAFENEMAKKVKLQNVLSQLRKCVDHPYL 332
Query: 407 FVG-EYNMWR-KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLND 464
F G E + + +I ASGK LLD+LL L GHRVLLFSQMT+++DIL+ Y+
Sbjct: 333 FDGVEPEPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYMDYRG 392
Query: 465 FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNP 524
+ + R+DGS + EER +K F P F+FLLSTRAGG+G+NL ADTVI DSD+NP
Sbjct: 393 YSYERVDGSVRGEERHLAIKNFG--QQPIFIFLLSTRAGGVGMNLTAADTVIFVDSDFNP 450
Query: 525 QMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTST- 583
Q D QA RAHRIGQ K V+V L+ ++EE+I +A K+ + +I+ G F +
Sbjct: 451 QNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIICRKAASKLKLTNTIIEGGRFTLGAQR 510
Query: 584 -AQDRREMLKEIMRRGTSSLGTDVPS---EREINRLAARSDEEFWLFEKM---DEERRQK 636
A + L EI++ G L + S E ++ + + + W+ + + +E R++
Sbjct: 511 PAAEADLQLSEILKFGLDKLLSSEGSTMDEIDLESILGETKDGQWISDALPSTEEGSREQ 570
Query: 637 ENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEK 668
E ++ M E + YS +KE++K FE+
Sbjct: 571 EEGKNH-MYLFEGKD--YSKEPSKEDRKSFEQ 599
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
Identities = 243/625 (38%), Positives = 359/625 (57%)
Query: 110 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVI 169
L G +LR YQL+G+ W++ + IL DEMGLGKT QTI+L+ YL + +I
Sbjct: 41 LTGIKLRPYQLDGVNWLVQCYQVQHGCILGDEMGLGKTCQTISLLLYLTKKLTNKERSLI 100
Query: 170 VAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD 229
+ P +VL NW E +AP ++ V Y G +ER +++ E+ F VL+T Y++ ++D
Sbjct: 101 LCPLSVLSNWKEELERFAPGLSFVTYVGNKEERYKLQQNL-KEQSHFRVLLTTYEICLKD 159
Query: 230 RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNF 289
+LK W ++VDE HRLKN L +T++ + LLLTGTPIQNSLQEL+SLL+F
Sbjct: 160 AAFLKFFDWAALVVDEAHRLKNQNSLLYETLTELPVGFSLLLTGTPIQNSLQELYSLLSF 219
Query: 290 LLPTIF--NSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEK 347
+ P IF V+ F E++ A K+ + A + LH++++PF+LRR K EV
Sbjct: 220 IEPDIFPRKQVKEFVEYYQAVEKE-SEPA----------KELHNLLQPFLLRRVKSEVTA 268
Query: 348 YLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLF 407
LP K +V+L MSA Q+ YY+ + + GTG+ LQN+ +QLRKC HPYLF
Sbjct: 269 DLPKKVEVVLYHGMSALQRKYYKAILTKDLDAFEGGTGRKVMLQNVLIQLRKCVAHPYLF 328
Query: 408 VG-EYNMWR-KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDF 465
G E + + I+ ASGK LLD+LL L GHRVLLFSQMT+L+DIL+ Y+ +
Sbjct: 329 NGVEPEPFEIGDHIVEASGKLCLLDKLLSFLYDGGHRVLLFSQMTKLLDILQDYMDYRGY 388
Query: 466 KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQ 525
+ RLDGS + EER +K F P F+FLLSTRAGG+G+NL ADTVI DSD+NPQ
Sbjct: 389 SYERLDGSVRGEERHLAIKNFG--QQPIFVFLLSTRAGGVGMNLTAADTVIFTDSDFNPQ 446
Query: 526 MDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNT-TSTA 584
D QA RAHRIGQ K V++ L+ ++EE+I RA K+ + +++ G F
Sbjct: 447 NDLQAIARAHRIGQHKPVKIIRLIGRDTVEEIIYRRAASKLRLTNAIVEGGQFALGVHKP 506
Query: 585 QDRREM-LKEIMRRGT----SSLGTDVPSEREINRLAARSDEEFWLFEKM--DEERRQKE 637
Q+ ++ L EI++ G SS G+ V + E+ + + W+ + + EE R ++
Sbjct: 507 QEASDLQLSEILKFGLDKLLSSEGSTV-QDVELENILGETKGGKWVMDAVLPCEEERNED 565
Query: 638 NYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSI--TGKRKRKEVVYADTLSDL 695
+ + M +E + YS ++E++K F++ + + I T K R A+TL
Sbjct: 566 DTENH-MYVYEGKD--YSKEPSREDKKAFDQLLDLQKALIEETSKEGRALRNKANTLLTG 622
Query: 696 QWMKAVENGQDIS--KLSTRGKRRE 718
++ +S +L TR K+R+
Sbjct: 623 LRDQSTRRKHLLSAEELETRRKKRQ 647
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 989 (353.2 bits), Expect = 2.0e-99, Sum P(2) = 2.0e-99
Identities = 225/522 (43%), Positives = 320/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKTIQTI + Y L +G T GP ++
Sbjct: 689 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFL-YSLYKEGHTKGPFLVS 747
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP V Y G D R +RE FS E +G
Sbjct: 748 APLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 807
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++GY+I +LLLT
Sbjct: 808 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 867
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 868 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 915
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 916 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLL 975
Query: 392 NLSMQLRKCCNHPYLF-VGEYNM-------WRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + +I++SGK LL ++L KL++ GHRV
Sbjct: 976 NIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLKEQGHRV 1035
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1036 LIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAG 1095
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVIIFDSDWNP D QA RAHRIGQ +V ++ V+ S+EE I + AK
Sbjct: 1096 GLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAK 1155
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + + + ++E L +I++ GT L D
Sbjct: 1156 RKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILKFGTEELFKD 1195
Score = 41 (19.5 bits), Expect = 2.0e-99, Sum P(2) = 2.0e-99
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 631 EERRQKENYRSRLMEDHEV-PE-WAYSAPDNKEEQK-GFEKGFGHESSSITGKRKRKEVV 687
EE + +E R + ++ V P+ W + E+Q+ + G GKR RK+V
Sbjct: 1251 EEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK------GKRVRKQVN 1304
Query: 688 YADTLSDLQ 696
Y D + Q
Sbjct: 1305 YNDAAQEDQ 1313
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 997 (356.0 bits), Expect = 2.1e-99, P = 2.1e-99
Identities = 253/699 (36%), Positives = 388/699 (55%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKT+QTI + L + +G + GP+++
Sbjct: 628 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEQGHSKGPYLVS 687
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS------ERGR--------- 215
AP + + NW EF WAP V Y G + R +RE FS G+
Sbjct: 688 APLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEA 747
Query: 216 ---FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++ Y+I +LLLT
Sbjct: 748 QIKFHVLLTSYELITIDQAVLGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLT 807
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 808 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 855
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 856 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLL 915
Query: 392 NLSMQLRKCCNHPYLF--------VGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + ++++SGK LL ++L KLR GHRV
Sbjct: 916 NIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGKLMLLQKMLKKLRDGGHRV 975
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 976 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAG 1035
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1036 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1095
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD-----VPSEREINRLAAR 618
+KM + V++ GL + S + ++E L +I++ GT L D V ++++ +
Sbjct: 1096 RKMMLTHLVVRPGL-GSKSGSMTKQE-LDDILKFGTEELFKDDVEGGVSDNKDVDDSSVI 1153
Query: 619 SDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSIT 678
++ + + +D R Q + L +E A E+ G ++ E
Sbjct: 1154 HYDDAAISKLLD--RNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVQEEVEREII--- 1208
Query: 679 GKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLPSEGNESASNSTGAEKK 737
K++E V D L + +D+++ +GKR R+ + N+++ + +
Sbjct: 1209 ---KQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQV--NYNDASQEDQEWQDE 1263
Query: 738 NLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSD 776
D ++E + + SE ED F P+ R + R SD
Sbjct: 1264 LSDNQSE-YSIGSEDEDED-FEERPEGGRRQSRRQLKSD 1300
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 989 (353.2 bits), Expect = 2.7e-99, Sum P(2) = 2.7e-99
Identities = 225/522 (43%), Positives = 320/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKTIQTI + Y L +G T GP ++
Sbjct: 784 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFL-YSLYKEGHTKGPFLVS 842
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS-E----RG----------- 214
AP + + NW EF WAP V Y G D R +RE FS E +G
Sbjct: 843 APLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 902
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++GY+I +LLLT
Sbjct: 903 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 962
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 963 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 1010
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 1011 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLL 1070
Query: 392 NLSMQLRKCCNHPYLF-VGEYNM-------WRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + +I++SGK LL ++L KL++ GHRV
Sbjct: 1071 NIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLKEQGHRV 1130
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1131 LIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAG 1190
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVIIFDSDWNP D QA RAHRIGQ +V ++ V+ S+EE I + AK
Sbjct: 1191 GLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAK 1250
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + + + ++E L +I++ GT L D
Sbjct: 1251 RKMMLTHLVVRPGL-GSKAGSMSKQE-LDDILKFGTEELFKD 1290
Score = 41 (19.5 bits), Expect = 2.7e-99, Sum P(2) = 2.7e-99
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 631 EERRQKENYRSRLMEDHEV-PE-WAYSAPDNKEEQK-GFEKGFGHESSSITGKRKRKEVV 687
EE + +E R + ++ V P+ W + E+Q+ + G GKR RK+V
Sbjct: 1346 EEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGK------GKRVRKQVN 1399
Query: 688 YADTLSDLQ 696
Y D + Q
Sbjct: 1400 YNDAAQEDQ 1408
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 993 (354.6 bits), Expect = 4.2e-99, P = 4.2e-99
Identities = 261/726 (35%), Positives = 400/726 (55%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKT+QTI + Y L +G + GP+++
Sbjct: 613 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFL-YSLYKEGHSKGPYLVS 671
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS------ERGR--------- 215
AP + + NW EF WAP V Y G + R +RE FS G+
Sbjct: 672 APLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEV 731
Query: 216 ---FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++ Y+I +LLLT
Sbjct: 732 QIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLT 791
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 792 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 839
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 840 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLL 899
Query: 392 NLSMQLRKCCNHPYLF--------VGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + ++++SGK LL ++L KLR GHRV
Sbjct: 900 NIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRV 959
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 960 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAG 1019
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1020 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1079
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSL-GTDVPSE-REINRLAARSDE 621
+KM + V++ GL + S + ++E L +I++ GT L DV + +++ + +
Sbjct: 1080 RKMMLTHLVVRPGL-GSKSGSMTKQE-LDDILKFGTEELFKDDVEGDNKDVEDSSVIHYD 1137
Query: 622 EFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKR 681
+ + + +D R Q + L +E A E+ G E+ E I
Sbjct: 1138 DAAISKLLD--RNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEV---EREII---- 1188
Query: 682 KRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLPSEGNESASNSTGAEKKNLD 740
K++E V D L + +D+++ +GKR R+ + N+++ + + D
Sbjct: 1189 KQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQV--NYNDASQEDQEWQDELSD 1246
Query: 741 MKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHKGVQGSGLNGHILTW 800
++E + + SE ED F P+ + RR S +K + G N +L +
Sbjct: 1247 NQSE-YSIGSEDEDED-FEERPEG-QSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGF 1303
Query: 801 NTHRKK 806
N ++K
Sbjct: 1304 NARQRK 1309
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 987 (352.5 bits), Expect = 5.2e-99, Sum P(2) = 5.2e-99
Identities = 221/522 (42%), Positives = 319/522 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKT+QTI + Y L +G + GP+++
Sbjct: 643 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFL-YSLYKEGHSKGPYLVS 701
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS------ERGR--------- 215
AP + + NW EF WAP V Y G + R +RE FS G+
Sbjct: 702 APLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEV 761
Query: 216 ---FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++ Y+I +LLLT
Sbjct: 762 QIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLT 821
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 822 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 869
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 870 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLL 929
Query: 392 NLSMQLRKCCNHPYLF--------VGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + ++++SGK LL ++L KLR GHRV
Sbjct: 930 NIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRV 989
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 990 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAG 1049
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K+V ++ V+ S+EE I + AK
Sbjct: 1050 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAK 1109
Query: 564 QKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTD 605
+KM + V++ GL + S + ++E L +I++ GT L D
Sbjct: 1110 RKMMLTHLVVRPGL-GSKSGSMTKQE-LDDILKFGTEELFKD 1149
Score = 38 (18.4 bits), Expect = 5.2e-99, Sum P(2) = 5.2e-99
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 679 GKRKRKEVVYADTLSDLQ 696
GKR RK+V Y D + Q
Sbjct: 1251 GKRIRKQVNYNDASQEDQ 1268
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 980 (350.0 bits), Expect = 1.1e-98, Sum P(2) = 1.1e-98
Identities = 225/591 (38%), Positives = 343/591 (58%)
Query: 99 IEEKVTEQPTLLQG-G-ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY 156
+++K +QP L+G G +L YQ+EG+ W+ + ++ ILADEMGLGKTIQT+ +
Sbjct: 712 LKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYS 771
Query: 157 LLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREE--FFSE-- 212
L + GP ++ P + L NW EF WAP + Y G D R +RE F E
Sbjct: 772 LYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGA 831
Query: 213 -RG-----------RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTI 260
RG +FNVL+T Y+LI D L + W ++VDE HRLK+++ + +
Sbjct: 832 IRGSKVSRLRTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRIL 891
Query: 261 SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDE 320
+ Y I +LLLTGTP+QN+L+EL+ LLNFL FN ++ F+ F D ++ E
Sbjct: 892 NSYTIAYKLLLTGTPLQNNLEELFHLLNFLSRDKFNDLQAFQ----GEFAD-----VSKE 942
Query: 321 EQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGL 380
EQ ++RLH ++ P +LRR K +V K +P KS+ I++ ++SA QK +Y+ + L
Sbjct: 943 EQ---VKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTKNYEAL 999
Query: 381 DTGTGK-SKSLQNLSMQLRKCCNHPYLF--VGEY------NMWRKEEIIRASGKFELLDR 431
++ +G S SL N+ M L+KCCNHPYLF E ++ + +A+GK LL +
Sbjct: 1000 NSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYEINSLTKAAGKLVLLSK 1059
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
+L +L+ HRVL+FSQMT+++DILE +L+ +K+ R+DG R + +FNAP +
Sbjct: 1060 MLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGA 1119
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
F+FLLSTRAGGLG+NL TADTVII+DSDWNP D QA RAHRIGQ +V ++ V+
Sbjct: 1120 QQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1179
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSERE 611
S+EE + + AK+KM + V++ G+ A ++ L +I+R GT L + E
Sbjct: 1180 NSVEERVTQVAKRKMMLTHLVVRPGMGG--KGANFTKQELDDILRFGTEDLFKEDDKEEA 1237
Query: 612 INRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEE 662
I+ ++ E L ++ + +KE++ + + +V +A + +EE
Sbjct: 1238 IH-YDDKAVAE--LLDRTNRGIEEKESWANEYLSSFKVASYATKEEEEEEE 1285
Score = 417 (151.9 bits), Expect = 4.1e-35, P = 4.1e-35
Identities = 112/351 (31%), Positives = 185/351 (52%)
Query: 413 MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDG 472
++ + +A+GK LL ++L +L+ HRVL+FSQMT+++DILE +L+ +K+ R+DG
Sbjct: 1041 LYEINSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDG 1100
Query: 473 STKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAED 532
R + +FNAP + F+FLLSTRAGGLG+NL TADTVII+DSDWNP D QA
Sbjct: 1101 GITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFS 1160
Query: 533 RAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTS--TAQDRREM 590
RAHRIGQ +V ++ V+ S+EE + + AK+KM + V++ G+ + T Q+ ++
Sbjct: 1161 RAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQELDDI 1220
Query: 591 LK----EIMRRGTS--SLGTDVPSEREINRLAARS--DEEFWLFEKMDE-------ERRQ 635
L+ ++ + ++ D + E+ R ++E W E + + +
Sbjct: 1221 LRFGTEDLFKEDDKEEAIHYDDKAVAELLDRTNRGIEEKESWANEYLSSFKVASYATKEE 1280
Query: 636 KENYRSRLM-EDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYAD---- 690
+E + ++ +D E + AY + + ++ G GKR RK+V Y D
Sbjct: 1281 EEEEETEIIKQDAENSDPAYWVKLLRHHYEQHQEDVGRSLGK--GKRVRKQVNYTDGGVV 1338
Query: 691 ----TLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKK 737
T D W +NG + + + G + G++ + GAE+K
Sbjct: 1339 AADTTRDDSNWQ---DNGSEYNSEYSAGSDED----GGDDDFDDQNGAERK 1382
Score = 44 (20.5 bits), Expect = 1.1e-98, Sum P(2) = 1.1e-98
Identities = 36/159 (22%), Positives = 66/159 (41%)
Query: 613 NRLAARSDEEFWLFEK--MDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGF 670
N+ AR F L E+ + EE+ ++ Y + L +D P + +A E + +
Sbjct: 1809 NKFLAR---RFKLLEQALVIEEQLRRAAYLN-LAQDPSHPAMSLNA--RFAEVECLAESH 1862
Query: 671 GHESS-SITGKRKRKEVVYADTLSDLQWMKAVENGQDISKL-STRGK-----RREYLPSE 723
H S S+ G + V++ L+ L+ + + + D+S+L +T + +R +
Sbjct: 1863 QHLSKESLAGNKPANAVLHK-VLNQLEELLS-DMKSDVSRLPATLARIPPVAQRLQMSER 1920
Query: 724 GNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAP 762
S +T N FP +GT+ F S P
Sbjct: 1921 SILSRLAATAGNASNAAQLMAQFPAGFQGTTLPAFTSGP 1959
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 964 (344.4 bits), Expect = 1.2e-97, Sum P(2) = 1.2e-97
Identities = 209/502 (41%), Positives = 307/502 (61%)
Query: 101 EKVTEQPTLL-QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 159
+K+ + P +G +LR YQLEGL W+ ++ N IL DEMGLGKT+Q+++++ L +
Sbjct: 494 KKIDQSPDYFTKGNKLRPYQLEGLNWLSFCWHEQRNSILGDEMGLGKTVQSVSILETLRK 553
Query: 160 NKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYD---GRPDERKA---MREEFFSER 213
G+ GP ++VAP +P+W EF W A V +D GRP R ++++
Sbjct: 554 VHGIRGPFLVVAPLTTIPHWKREFENWTDMNALVYHDSGAGRPICRNYEFYLKDKDGGGG 613
Query: 214 G----------RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY 263
G +FNVLIT Y++ + DR +L ++ W Y+++DE HRLKN C L + Y
Sbjct: 614 GASGGASGKITKFNVLITTYEMAITDRTHLSRIPWKYLVIDEAHRLKNKSCKLTIELRSY 673
Query: 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQL 323
LLLTGTP+QN+ QELWSLLNFL P F++++ F + G L + Q
Sbjct: 674 SFDHLLLLTGTPLQNNTQELWSLLNFLDPKQFSNLDQF-------LLEYGD--LKESSQ- 723
Query: 324 LIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTG 383
+ L +++P++LRR K+ VEK + K + I++ +++ QK YY+ + + L G
Sbjct: 724 --VESLQAILKPYLLRRMKERVEKSIAPKEETIVEVELTTVQKKYYRAIYEKNFSFLRKG 781
Query: 384 TGKSK---SLQNLSMQLRKCCNHPYLFVG----EYNMWR-KEEI----IRASGKFELLDR 431
GKS SL N+ M+LRKCCNHPYL G E + + K++I I+ASGK L+D+
Sbjct: 782 -GKSNQGPSLLNIMMELRKCCNHPYLTKGVEQSETSSIKDKDQIFQKLIQASGKLVLIDK 840
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
LLPKL+ H+VL+FSQM ++DIL+ YL + R+DGS K +R + +F+ PDS
Sbjct: 841 LLPKLKLGNHKVLIFSQMVSVLDILDDYLTYRGYPHERIDGSIKGNDRQAAIDRFSKPDS 900
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
F+FLL TRAGG+G+NL ADTVIIFDSDWNPQ D QA+ R HRIGQ K V+V+ LV+
Sbjct: 901 DRFVFLLCTRAGGIGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQDKMVKVYRLVTK 960
Query: 552 GSIEEVILERAKQKMGIDAKVI 573
+ E ++ ++A +K+G+D V+
Sbjct: 961 NTYERLMFDKASKKLGLDRAVL 982
Score = 54 (24.1 bits), Expect = 1.2e-97, Sum P(2) = 1.2e-97
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 643 LMEDHEVP--EWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKE 685
+ D +P E A S +KE++KG G + + KRKRKE
Sbjct: 1784 ICNDQSLPFHELAQSLRLDKEKEKGSGGDSGVDDDASDKKRKRKE 1828
Score = 43 (20.2 bits), Expect = 1.8e-96, Sum P(2) = 1.8e-96
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 613 NRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDN 659
N+L S E +K+++E++Q+E + R ++ +V EW D+
Sbjct: 1518 NKLEKESKNEK---KKIEKEKKQEEKLKKR--QEPKV-EWTKREKDS 1558
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 497 (180.0 bits), Expect = 2.2e-97, Sum P(3) = 2.2e-97
Identities = 97/211 (45%), Positives = 139/211 (65%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P+LL+G LR YQ +GL W+ SL+NNN NGILADEMGLGKTIQTI+L+AYL GP
Sbjct: 816 PSLLRG-TLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHHKWGP 874
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI 226
H+I+ P +V+ NW EF +AP + Y G P +R A + + +++ F+V IT Y L+
Sbjct: 875 HLIIVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQR-AQKRKGWNKPDAFHVCITSYQLV 933
Query: 227 MRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSL 286
++D+Q K+ +W YMI+DE H +KN + + + + RLLLTGTP+QN+L ELWSL
Sbjct: 934 VQDQQSFKRRRWTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNNLMELWSL 993
Query: 287 LNFLLPTI---------FNSVENFEEWFNAP 308
L FL+P+ F ++++F++WF P
Sbjct: 994 LYFLMPSSKVNQAMPEGFANLDDFQQWFGKP 1024
Score = 411 (149.7 bits), Expect = 2.2e-97, Sum P(3) = 2.2e-97
Identities = 98/248 (39%), Positives = 148/248 (59%)
Query: 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 483
GK + L LL +L GHR L+F+QMT+++DILE +L ++ ++++RLDG+TK E+R L
Sbjct: 1366 GKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLT 1425
Query: 484 KQFNA-PDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 542
++FN P P +F+LSTR+GGLG+NL ADTVI +DSDWNP MD+Q +DR HRIGQ ++
Sbjct: 1426 EKFNRDPKIP--VFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRD 1483
Query: 543 VRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQ-DRREMLKEIMRRGTSS 601
V ++ VS +IE I+++A QK +D VIQ G F T + R+++ + S+
Sbjct: 1484 VHIYRFVSEYTIESNIIKKANQKRQLDNVVIQEGEFTTDYFGKFSVRDLVSD------SN 1537
Query: 602 LGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKE 661
+G ++ ++R I +F KM Q E+ R+ + E A D KE
Sbjct: 1538 IGKEI-TDRTI---------DFSGDAKMGNVLAQAEDEEDRVAAGAALKEVAIDDDDFKE 1587
Query: 662 EQKGFEKG 669
E + G
Sbjct: 1588 ETRSATTG 1595
Score = 190 (71.9 bits), Expect = 2.2e-97, Sum P(3) = 2.2e-97
Identities = 47/139 (33%), Positives = 69/139 (49%)
Query: 285 SLLNFLLPTIFNSVENFEEWFNAPFK------DRGQVALTDEEQLLI----------IRR 328
S +N +P F ++++F++WF P G L DE + + R
Sbjct: 1001 SKVNQAMPEGFANLDDFQQWFGKPVNRILEQTSAGNSDLIDENERTTQKMDEETRNTVAR 1060
Query: 329 LHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSK 388
LH V+RP++LRR K +VEK +PGK + I+ C +S Q+ Y + +G
Sbjct: 1061 LHQVLRPYLLRRLKKDVEKQMPGKYEHIVYCRLSKRQRFLYDDFMSRAKTKETLASGNFL 1120
Query: 389 SLQNLSMQLRKCCNHPYLF 407
S+ N MQLRK CNHP LF
Sbjct: 1121 SIINCLMQLRKVCNHPDLF 1139
Score = 42 (19.8 bits), Expect = 2.4e-43, Sum P(2) = 2.4e-43
Identities = 24/89 (26%), Positives = 38/89 (42%)
Query: 620 DEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITG 679
DE +KMDEE R N +RL H+V K+ +K + H
Sbjct: 1041 DENERTTQKMDEETR---NTVARL---HQVLRPYLLRRLKKDVEKQMPGKYEHIVYCRLS 1094
Query: 680 KRKRKEVVYADTLSDLQWMKAVENGQDIS 708
KR+R +Y D +S + + + +G +S
Sbjct: 1095 KRQR--FLYDDFMSRAKTKETLASGNFLS 1121
Score = 39 (18.8 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 364 WQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNH----PYLFV 408
W Y T+ G + + G GK+ +Q +S+ C H P+L +
Sbjct: 833 WLASLYNNNTN-GILADEMGLGKT--IQTISLLAYLACEHHKWGPHLII 878
Score = 38 (18.4 bits), Expect = 3.0e-58, Sum P(3) = 3.0e-58
Identities = 27/152 (17%), Positives = 60/152 (39%)
Query: 601 SLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNK 660
+L DV +N +S + E ++ + + + +Y +
Sbjct: 1179 ALNLDVTGCENMNYFVCQSTGKLMTTEPFQDQINKLKILLVEFENSDPINYVSYYQRLRR 1238
Query: 661 EEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVE-NGQDISKLSTRGKRREY 719
EEQ ++ H + R ++ +Y ++L L + A + + + +K R
Sbjct: 1239 EEQAEIKEKLEHVVY-LNNLRCGRKPIYGESLLRLLTVNAHDFSDEPYNKYCLTLSGRVD 1297
Query: 720 LPSEGNESASNSTGAEKKNLDMKNEIFPLASE 751
++ E S T A LDMK+++ P++++
Sbjct: 1298 KMNDTIEKYSIITPAAVA-LDMKDQLIPISTK 1328
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
Identities = 213/453 (47%), Positives = 291/453 (64%)
Query: 105 EQPTLL---QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
+QP+ + +G ELR YQL GL W+ + + ILADEMGLGKTIQTI+ + YL
Sbjct: 466 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 525
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR-EEFF---SERGRFN 217
+ GP ++V P + L +W E TWA + AVVY G + R +R E+ ++R +FN
Sbjct: 526 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFN 585
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
+L+T Y+++++D+ +L + W ++ VDE HRLKN + L KT+ ++ RLL+TGTP+Q
Sbjct: 586 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 645
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
NSL+ELWSLL+F++P F+S E+FEE + ++ G +L H + PF+
Sbjct: 646 NSLKELWSLLHFIMPEKFSSWEDFEEE-HGKGREYGYASL------------HKELEPFL 692
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQ 396
LRR K +VEK LP K + IL+ +MSA QK YY+ + L G+ G + N+ M+
Sbjct: 693 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 752
Query: 397 LRKCCNHPYLFVGEYN--MWRKEE----IIRASGKFELLDRLLPKLRKSGHRVLLFSQMT 450
L+KCCNH YL N + K+E +IR+SGK LLD+LL +LR+ G+RVL+FSQM
Sbjct: 753 LKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMV 812
Query: 451 RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 510
R++DIL YLK F F RLDGS E R L FNA S F FLLSTRAGGLG+NL
Sbjct: 813 RMLDILAEYLKYRQFPFQRLDGSIG-ELRRQALDHFNAXGSEDFCFLLSTRAGGLGINLA 871
Query: 511 TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543
+ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V
Sbjct: 872 SADTVVIFDSDWNPQNDLQAQARAHRIGQKKQV 904
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 973 (347.6 bits), Expect = 3.4e-97, P = 3.4e-97
Identities = 220/552 (39%), Positives = 332/552 (60%)
Query: 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
E + P+ L G+L+ +Q++G+ +M + N N +LADEMGLGKT+QT+A I++L
Sbjct: 432 EPIKGTPSFLHNGQLKEFQVKGVNFMAFNWVKNRNVVLADEMGLGKTVQTVAFISWLRHV 491
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE----RGR 215
+ GP V+V P + +P+W F W+P + VVY+G R ++E E + R +
Sbjct: 492 RRQQGPFVVVVPLSTMPSWAETFDNWSPDLNYVVYNGNEASRNVLKEYELMVDGNPRRPK 551
Query: 216 FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTP 275
FNVL+T Y+ ++ D +L + W +M VDE HRLKN + L + + RLL+TGTP
Sbjct: 552 FNVLLTTYEYVLVDSSFLSQFNWQFMAVDEAHRLKNRDSQLYIKLQEFNSPARLLITGTP 611
Query: 276 IQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 335
IQN+L EL +LL+FL P + N +A + A E+L L I P
Sbjct: 612 IQNNLAELSALLDFLNPGLVN--------VDADMDLNSEAA---SEKLA---ELTKAISP 657
Query: 336 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLS 394
F+LRR K +VE LP K++ I++ ++S Q YY+ + L+ GT G+ +SL N+
Sbjct: 658 FMLRRTKTKVESDLPPKTEKIIRVELSDVQLEYYKNILTKNYAALNEGTKGQKQSLLNIM 717
Query: 395 MQLRKCCNHPYLFVG-EYNMW----RKEEIIRA----SGKFELLDRLLPKLRKSGHRVLL 445
M+L+K NHP++F E + R+E+++RA SGK LLD+LL KL++ GHRVL+
Sbjct: 718 MELKKASNHPFMFPSAETKILEGSTRREDVLRALITSSGKMMLLDQLLAKLKRDGHRVLI 777
Query: 446 FSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL 505
FSQM +++DIL Y++ + + RLDG+ + R ++ +NAPDS F F+LSTRAGGL
Sbjct: 778 FSQMVKMLDILGDYMEYRGYTYQRLDGTIPSASRRLAIEHYNAPDSSDFAFILSTRAGGL 837
Query: 506 GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 565
G+NL TADTVI+FDSDWNPQ D QA RAHRIGQ K V V+ LVS ++EE ++ERA+ K
Sbjct: 838 GINLMTADTVILFDSDWNPQADLQAMARAHRIGQTKPVSVYRLVSKDTVEEEVIERARNK 897
Query: 566 MGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWL 625
+ ++ IQ G+ T A + ++ M RG +LG + S +I+R+ R + +
Sbjct: 898 LLLEFITIQRGV--TDKEASE----IQNKMARGGITLG-EPNSTDDISRILKRRGQR--M 948
Query: 626 FEKMDEERRQKE 637
FE+ + + ++
Sbjct: 949 FEQTGNQAKLEQ 960
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
Identities = 221/586 (37%), Positives = 349/586 (59%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P+ ++GG LR YQ+ GL W++SL+ N +NGILADEMGLGKT+QTIAL+ YL + + GP
Sbjct: 175 PSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP 234
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA-MREEFFSERGRFNVLITHYDL 225
H+++ PK+ L NW+NEF W PS+ + + G D R A +R+E G ++V +T Y++
Sbjct: 235 HMVLVPKSTLYNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMP--GEWDVCVTSYEM 292
Query: 226 IMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285
+++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP+QN+L ELW+
Sbjct: 293 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 352
Query: 286 LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 345
LLNFLLP +FNS ++F+ WF+ K+ L D++ ++ RLH V++PF+LRR K +V
Sbjct: 353 LLNFLLPDVFNSADDFDSWFDT--KN----CLGDQK---LVERLHAVLKPFLLRRIKTDV 403
Query: 346 EKYLPGKSQVILKCDMSAWQKVYYQQVTD-VGRVGLDTGTGKSKSLQNLSMQLR--KCCN 402
EK LP K ++ + +S Q+ ++ + + ++ + N+ M LR KCC
Sbjct: 404 EKSLPPKKEIKVYLGLSKMQREWFVILAFFISENSNNSNKNHKLDILNVIMLLREAKCCG 463
Query: 403 HPY-LFVGEYNMW--RKEEIIRAS-GKFELLDRLLPKLRKSGHRVL-LFSQMTRLMD--I 455
+ L + N+ K I S G +LD ++ + R L + + + +
Sbjct: 464 ASFCLQKKKQNVAYINKVHINYCSKGIISMLDYCKTEIEQHRCRCLCILNPLNTFFENGF 523
Query: 456 LEIYLKLNDFKFLRLDGSTKTEE-----------RGTLLKQFNAPDSPYFMFLLSTRAGG 504
L+I++K + ++ D E+ + ++ FNAP+S F+F+LSTRAGG
Sbjct: 524 LQIHIKHKPYSAIQNDPFPWNEDDTKYLFVYIIYKKEAIEAFNAPNSSKFIFMLSTRAGG 583
Query: 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564
LG+NL +AD VI++DSDWNPQ+D QA DRAHRIGQKK VRVF L++ ++EE I+ERA+
Sbjct: 584 LGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEI 643
Query: 565 KMGIDAKVIQAG-LFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSD 620
K+ +D+ VIQ G L + S + EML +++R G + + SE +I L R +
Sbjct: 644 KLRLDSIVIQQGRLIDQQSNKLAKEEML-QMIRHGATHVFASKESELTDEDITTLLERGE 702
Query: 621 EEFWLFEKMDEERRQK--ENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
++ +M+E R QK E+ D E + + D +E+QK
Sbjct: 703 KKT---AEMNE-RLQKMGESSLRNFRMDTEQSLYKFEGEDYREKQK 744
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 975 (348.3 bits), Expect = 5.1e-97, P = 5.1e-97
Identities = 268/711 (37%), Positives = 384/711 (54%)
Query: 105 EQPTLLQGGE---LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
+QP+ + G E LR YQL GL W+ + + ILADEMGLGKTIQTI+ + YL
Sbjct: 465 KQPSYIGGHESLELRDYQLNGL-WLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 523
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR-EEFF---SERGRFN 217
+ GP ++V P + L +W E TWAP + AVVY G R +R E+ ++R +FN
Sbjct: 524 QLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFN 583
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGT-PI 276
+L+T Y+++++D+ +L + W ++ VDE HRLKN + L KT+ I + + T P
Sbjct: 584 ILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTL----IDLVTIDSDTAPS 639
Query: 277 QNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 336
QELWSL +F++P F+S E+FEE + ++ G +L H + PF
Sbjct: 640 CTIPQELWSL-HFIMPEKFSSWEDFEEE-HGKGREYGYASL------------HKELEPF 685
Query: 337 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSM 395
+LRR K +VEK LP K + IL+ +MSA QK YY+ + L G+ G + N+ M
Sbjct: 686 LLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMM 745
Query: 396 QLRKCCNHPYLFV--GEYNMWRKEE----IIRASGKFELLDRLLPKLRKSGHRVLLFSQM 449
+L+KCCNH YL + + K+E +IR+SGK LLD+LL +LR+ G+RVL+FSQM
Sbjct: 746 ELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQM 805
Query: 450 TRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNL 509
R++DIL YLK F F RLDGS K E R L FNA S F FLLSTRAGGLG+NL
Sbjct: 806 VRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINL 865
Query: 510 QTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGID 569
+ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ GS+EE ILERAK+KM +D
Sbjct: 866 ASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLD 925
Query: 570 AKVIQ----AG--LFNTTSTAQD----RREMLKEIMRRGTSSLGTDVPSEREINRLAARS 619
VIQ G + +T ST +E L I++ G L + P E
Sbjct: 926 HLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAILKFGAEELFKE-PEGEEQEPQEMDI 984
Query: 620 DEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITG 679
DE E + E L+ +V ++ D+ E + E +
Sbjct: 985 DEILKRAETRENEPGPL-TVGDELLSQFKVANFSNMDEDDIELEPERNSRNWEEIIPESQ 1043
Query: 680 KRKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKRREYLPSEGNESASNSTGAEKKN 738
+R+ +E L ++ + + N + IS + G+R G++S S + K
Sbjct: 1044 RRRIEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSITERKRPKK 1103
Query: 739 LDMKNEIFPLASEGTSEDT---FGSAPKRLR--FERRNSESSDIQSVEKSE 784
I +G S+ F + K+ ER ++ + D + V+KSE
Sbjct: 1104 RGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAVARDAELVDKSE 1154
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 974 (347.9 bits), Expect = 6.5e-97, P = 6.5e-97
Identities = 268/713 (37%), Positives = 387/713 (54%)
Query: 105 EQPTLLQGGE---LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
+QP+ + G E LR YQL GL W+ + + ILADEMGLGKTIQTI+ + YL
Sbjct: 465 KQPSYIGGHESLELRDYQLNGL-WLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 523
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR-EEFF---SERGRFN 217
+ GP ++V P + L +W E TWAP + AVVY G R +R E+ ++R +FN
Sbjct: 524 QLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFN 583
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGT-PI 276
+L+T Y+++++D+ +L + W ++ VDE HRLKN + L KT+ I + + T P
Sbjct: 584 ILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTL----IDLVTIDSDTAPS 639
Query: 277 QNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 336
QELW LL+F++P F+S E+FEE + ++ G +L H + PF
Sbjct: 640 CTIPQELW-LLHFIMPEKFSSWEDFEEE-HGKGREYGYASL------------HKELEPF 685
Query: 337 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSM 395
+LRR K +VEK LP K + IL+ +MSA QK YY+ + L G+ G + N+ M
Sbjct: 686 LLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMM 745
Query: 396 QLRKCCNHPYLFV--GEYNMWRKEE----IIRASGKFELLDRLLPKLRKSGHRVLLFSQM 449
+L+KCCNH YL + + K+E +IR+SGK LLD+LL +LR+ G+RVL+FSQM
Sbjct: 746 ELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQM 805
Query: 450 TRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNL 509
R++DIL YLK F F RLDGS K E R L FNA S F FLLSTRAGGLG+NL
Sbjct: 806 VRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINL 865
Query: 510 QTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGID 569
+ADTV+IFDSDWNPQ D QA+ RAHRIGQKK+V ++ LV+ GS+EE ILERAK+KM +D
Sbjct: 866 ASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLD 925
Query: 570 AKVIQ----AG--LFNTTSTAQD----RREMLKEIMRRGTSSLGTDVPSEREINRLAARS 619
VIQ G + +T ST +E L I++ G L + P E
Sbjct: 926 HLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAILKFGAEELFKE-PEGEEQEPQEMDI 984
Query: 620 DEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITG 679
DE E + E L+ +V ++ D+ E + E +
Sbjct: 985 DEILKRAETRENEPGPL-TVGDELLSQFKVANFSNMDEDDIELEPERNSRNWEEIIPESQ 1043
Query: 680 KRKRKEVVYADTLSDLQWMKAVEN-GQDISKLSTRGKR---REYLPSEGNESASNSTGAE 735
+R+ +E L ++ + + N + IS + G+R R Y S+ ++S + +
Sbjct: 1044 RRRIEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSD-SDSITERKRPK 1102
Query: 736 KKNLD--MKNEIFPLASEGTSEDTFGSAPKRLR--FERRNSESSDIQSVEKSE 784
K+ + E S+ F + K+ ER ++ + D + V+KSE
Sbjct: 1103 KRGRPRTIPRENIKGFSDAEIRRRFIKSYKKFGGPLERLDAVARDAELVDKSE 1155
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 620 (223.3 bits), Expect = 1.0e-95, Sum P(2) = 1.0e-95
Identities = 127/315 (40%), Positives = 191/315 (60%)
Query: 100 EEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 159
E+ +T+ P +++ LR YQ GL W+L L+ NN+NGILADEMGLGKT+Q I+L++YL
Sbjct: 648 EKHLTKIPPIIKA-TLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAY 706
Query: 160 NKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVL 219
+ GPH+++ P ++L NW E + P + Y G +ER R +F+ + F++
Sbjct: 707 YFNIWGPHLVIVPTSILINWEIELKRFCPCFKILSYYGNQNERYKKRVGWFN-KDSFHIC 765
Query: 220 ITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNS 279
I+ Y +++D K+ +W Y+I+DE H +KN I + LL+TGTP+QNS
Sbjct: 766 ISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPLQNS 825
Query: 280 LQELWSLLNFLLPTIFNSVENFEEWFNAPFK---DRGQVALTDEEQLLIIRRLHHVIRPF 336
L+ELWSLL+FL+P IF S +F+EWF+ P ++ ++ + E +I RLH VIRP+
Sbjct: 826 LEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKE----LIDRLHTVIRPY 881
Query: 337 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQ 396
ILRR K VEK +P K + I+KC ++ Q++ Y + + V TG L N+ +Q
Sbjct: 882 ILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFINNKNVQNTLNTGNYIGLMNILIQ 941
Query: 397 LRKCCNHPYLFVGEY 411
LRK CNH LF +Y
Sbjct: 942 LRKVCNHCDLFTNKY 956
Score = 381 (139.2 bits), Expect = 1.0e-95, Sum P(2) = 1.0e-95
Identities = 87/235 (37%), Positives = 137/235 (58%)
Query: 417 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKT 476
++I SGK L++LL K ++ G++ LLF+Q +++DILEI+L ++ F+RLDGSTK
Sbjct: 1761 KDISLGSGKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKV 1820
Query: 477 EERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHR 536
E+R ++ +FN D F+F+ STR+G +G+NL A+ VI +D+DWNP +D+QA DR HR
Sbjct: 1821 EQRQKIVTKFNN-DKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHR 1879
Query: 537 IGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMR 596
IGQ K+V VF V ++EE I ++ QK +D I G FN ++T + +
Sbjct: 1880 IGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLDNICINMGNFNNSNT----HSKITDTDP 1935
Query: 597 RGTSSLGTDVPSERE--INRLAARSDEEFWLFEKMDE--ERRQKENYRSRLMEDH 647
T+V + +E IN+ D++ + + E E + K N R +H
Sbjct: 1936 THNKDWFTNVDTIKEVFINKKNNDDDDDMYKDRLLHEQVENKDKMNVRFEKTLEH 1990
Score = 44 (20.5 bits), Expect = 3.4e-60, Sum P(2) = 3.4e-60
Identities = 17/90 (18%), Positives = 36/90 (40%)
Query: 701 VENGQDISKLSTRGKRREY---LPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDT 757
++N +I + Y PS+ + N A L + N+ PL ++ + +
Sbjct: 1243 IDNNNNIDNHHNNNQHCNYNDNWPSDYPTNIINHRNAFLSILKLLNQSNPLNNDNNNNNN 1302
Query: 758 FGSAPKRL----RFERRNSESSDIQSVEKS 783
+ + R+ RNS +S + ++ S
Sbjct: 1303 NNNGNNNIYNMNRYNSRNSRNSSLSNIFSS 1332
Score = 41 (19.5 bits), Expect = 8.3e-30, Sum P(2) = 8.3e-30
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 111 QGGELRAYQLEGLQWMLSLFNNNLNGILADEM 142
Q G++ +++ + M+ +NN+N +L+ EM
Sbjct: 1105 QFGQIVSHERDNNYHMMD--HNNMNNLLSKEM 1134
Score = 38 (18.4 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 715 KRREYLPSEGNESASNSTGAEKKNLDMKNE 744
K+ P + NS+ EK N D++ +
Sbjct: 1603 KKTNNPPEDSEVYRENSSDVEKYNCDVEKD 1632
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 620 (223.3 bits), Expect = 1.0e-95, Sum P(2) = 1.0e-95
Identities = 127/315 (40%), Positives = 191/315 (60%)
Query: 100 EEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 159
E+ +T+ P +++ LR YQ GL W+L L+ NN+NGILADEMGLGKT+Q I+L++YL
Sbjct: 648 EKHLTKIPPIIKA-TLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAY 706
Query: 160 NKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVL 219
+ GPH+++ P ++L NW E + P + Y G +ER R +F+ + F++
Sbjct: 707 YFNIWGPHLVIVPTSILINWEIELKRFCPCFKILSYYGNQNERYKKRVGWFN-KDSFHIC 765
Query: 220 ITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNS 279
I+ Y +++D K+ +W Y+I+DE H +KN I + LL+TGTP+QNS
Sbjct: 766 ISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPLQNS 825
Query: 280 LQELWSLLNFLLPTIFNSVENFEEWFNAPFK---DRGQVALTDEEQLLIIRRLHHVIRPF 336
L+ELWSLL+FL+P IF S +F+EWF+ P ++ ++ + E +I RLH VIRP+
Sbjct: 826 LEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKE----LIDRLHTVIRPY 881
Query: 337 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQ 396
ILRR K VEK +P K + I+KC ++ Q++ Y + + V TG L N+ +Q
Sbjct: 882 ILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFINNKNVQNTLNTGNYIGLMNILIQ 941
Query: 397 LRKCCNHPYLFVGEY 411
LRK CNH LF +Y
Sbjct: 942 LRKVCNHCDLFTNKY 956
Score = 381 (139.2 bits), Expect = 1.0e-95, Sum P(2) = 1.0e-95
Identities = 87/235 (37%), Positives = 137/235 (58%)
Query: 417 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKT 476
++I SGK L++LL K ++ G++ LLF+Q +++DILEI+L ++ F+RLDGSTK
Sbjct: 1761 KDISLGSGKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKV 1820
Query: 477 EERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHR 536
E+R ++ +FN D F+F+ STR+G +G+NL A+ VI +D+DWNP +D+QA DR HR
Sbjct: 1821 EQRQKIVTKFNN-DKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHR 1879
Query: 537 IGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMR 596
IGQ K+V VF V ++EE I ++ QK +D I G FN ++T + +
Sbjct: 1880 IGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLDNICINMGNFNNSNT----HSKITDTDP 1935
Query: 597 RGTSSLGTDVPSERE--INRLAARSDEEFWLFEKMDE--ERRQKENYRSRLMEDH 647
T+V + +E IN+ D++ + + E E + K N R +H
Sbjct: 1936 THNKDWFTNVDTIKEVFINKKNNDDDDDMYKDRLLHEQVENKDKMNVRFEKTLEH 1990
Score = 44 (20.5 bits), Expect = 3.4e-60, Sum P(2) = 3.4e-60
Identities = 17/90 (18%), Positives = 36/90 (40%)
Query: 701 VENGQDISKLSTRGKRREY---LPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDT 757
++N +I + Y PS+ + N A L + N+ PL ++ + +
Sbjct: 1243 IDNNNNIDNHHNNNQHCNYNDNWPSDYPTNIINHRNAFLSILKLLNQSNPLNNDNNNNNN 1302
Query: 758 FGSAPKRL----RFERRNSESSDIQSVEKS 783
+ + R+ RNS +S + ++ S
Sbjct: 1303 NNNGNNNIYNMNRYNSRNSRNSSLSNIFSS 1332
Score = 41 (19.5 bits), Expect = 8.3e-30, Sum P(2) = 8.3e-30
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 111 QGGELRAYQLEGLQWMLSLFNNNLNGILADEM 142
Q G++ +++ + M+ +NN+N +L+ EM
Sbjct: 1105 QFGQIVSHERDNNYHMMD--HNNMNNLLSKEM 1134
Score = 38 (18.4 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 715 KRREYLPSEGNESASNSTGAEKKNLDMKNE 744
K+ P + NS+ EK N D++ +
Sbjct: 1603 KKTNNPPEDSEVYRENSSDVEKYNCDVEKD 1632
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 227/580 (39%), Positives = 327/580 (56%)
Query: 99 IEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL 158
+EE+ +Q L G LR+YQLEG+ W+ F+ IL DEMGLGKT QTIAL YL
Sbjct: 33 VEEQDLQQWGLT-GIRLRSYQLEGVNWLARCFHCQNGCILGDEMGLGKTCQTIALFIYLA 91
Query: 159 ENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNV 218
GP +I+ P +VL NW E +AP ++ V+Y G +ER ++++ E RF+V
Sbjct: 92 GRLNDEGPFLILCPLSVLSNWTEEMERFAPGLSCVMYAGDKEERARLQQDLKQE-SRFHV 150
Query: 219 LITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 278
L+T Y++ ++D +LK W ++VDE HRLKN L KT+ + + LLLTGTPIQN
Sbjct: 151 LLTTYEICLKDSSFLKSFPWSVLVVDEAHRLKNQNSLLHKTLLEFSVVFSLLLTGTPIQN 210
Query: 279 SLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338
SLQEL+SLL+F+ P +F E + F R Q + + LH +++PF+L
Sbjct: 211 SLQELYSLLSFVEPDLFPK-EQVGD-----FVQRYQDIEKESDSA---SELHKLLQPFLL 261
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLR 398
RR K EV LP K++V+L MSA QK YY+ + ++ K LQN+ QLR
Sbjct: 262 RRVKAEVATELPKKTEVVLYHGMSALQKKYYKAILMKDLDAFESEMAKKVKLQNVLSQLR 321
Query: 399 KCCNHPYLFVGEYNMWRKEEIIRASGKFEL-LDRLLPKLRKSGHRVLLFSQMTRLMDILE 457
KC +HPYLF GE + + + L L L GHRVLLFSQMT+++DIL+
Sbjct: 322 KCVDHPYLFEGETVPFFLTLLFMTTPLKNLELAALSFLFLARGHRVLLFSQMTQMLDILQ 381
Query: 458 IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII 517
Y+ + + R+DGS + EER +K F P F+FLLSTRAGG+G+NL ADTVI
Sbjct: 382 DYMDYRGYSYERVDGSVRGEERHLAIKNFG--QQPVFVFLLSTRAGGVGMNLTAADTVIF 439
Query: 518 FDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGL 577
DSD+NPQ D QA RAHRIGQ K V+V L+ ++EE++ +A K+ + +I+ G
Sbjct: 440 VDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNAIIEGGH 499
Query: 578 FN--TTSTAQDRREMLKEIMRRGT----SSLGTDVPSEREINRLAARSDEEFWLFEKMDE 631
F A D L EI++ G SS G+ + E ++ R+ + W+ + +
Sbjct: 500 FTLGAQKPAADADLQLSEILKFGLDKLLSSQGSTM-DEIDLERILGETKNGQWISDALAT 558
Query: 632 ER---RQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEK 668
R++E ++ M E + YS +KE+++ FE+
Sbjct: 559 TEGGVREQEEGKNH-MYLFEGKD--YSKEPSKEDRESFEQ 595
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 943 (337.0 bits), Expect = 4.5e-94, Sum P(2) = 4.5e-94
Identities = 207/544 (38%), Positives = 328/544 (60%)
Query: 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
+K++ G LR YQ EG+ W+L + N N ILADEMGLGKT+QTI ++ + +
Sbjct: 1183 KKMSTSKVWKNGNSLREYQFEGVDWLLYCYYNAQNCILADEMGLGKTVQTITFLSRIYDY 1242
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGR-PDERKAMREEFFSER--G--- 214
G+ GP ++V P + + NW+ EF TW A V + E E F+ +R G
Sbjct: 1243 -GIHGPFLVVVPLSTIQNWVREFETWTDMNAIVYHGSAYAREVLQQYEVFYDKRHCGAKN 1301
Query: 215 ------RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECAL-AKTISGYQIQR 267
+ + LIT ++ ++ D ++LKK+ W ++DE HRLKN C L + ++++
Sbjct: 1302 WKKNFVKIDALITTFETVVSDVEFLKKIPWRVCVIDEAHRLKNRNCKLLVNGLLAFRMEH 1361
Query: 268 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIR 327
R+LLTGTP+QN++ EL+SLLNFL P F++ F E F + TD++ ++
Sbjct: 1362 RVLLTGTPLQNNIDELFSLLNFLHPQQFDNSATFLEQFGS--------CQTDDQ----VQ 1409
Query: 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKS 387
+L +++P +LRR K++VEK L K + I++ +S QK +Y+ + + L GT +
Sbjct: 1410 KLQEILKPMMLRRLKEDVEKSLGPKEETIIEVQLSDMQKKFYRAILERNFSHLCKGTS-A 1468
Query: 388 KSLQNLSMQLRKCCNHPYLFVG-------EYNM----WRKEEI-----IRASGKFELLDR 431
SL N+ M+LRKCCNHP+L G ++ + W +E + I+ASGK L+++
Sbjct: 1469 PSLMNVMMELRKCCNHPFLINGAEEAIMNDFRLAHPDWDEETLAHKALIQASGKVVLIEK 1528
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
LLPKLRK GH+VL+FSQM +++D+LE +L + F R+DG+ + + R + +F+ +S
Sbjct: 1529 LLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERIDGNVRGDLRQAAIDRFSKENS 1588
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
F+FLL TRAGGLG+NL ADTVIIFDSDWNPQ D QA+ R HRIGQKK V+V+ L++
Sbjct: 1589 DRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQKKLVKVYRLITS 1648
Query: 552 GSIEEVILERAKQKMGIDAKVIQAGL-FNTTSTAQDRREMLKEIMRRGTSSLGTDVPSER 610
+ E + ++A K+G+D V+Q+ TA ++++ +E++++G + G+ + E
Sbjct: 1649 NTYEREMFDKASLKLGLDKAVLQSTTALKAEGTALSKKDV-EELLKKG--AYGSIMDEEN 1705
Query: 611 EINR 614
E ++
Sbjct: 1706 ESSK 1709
Score = 45 (20.9 bits), Expect = 4.5e-94, Sum P(2) = 4.5e-94
Identities = 22/91 (24%), Positives = 36/91 (39%)
Query: 694 DLQWMKAVENGQD--ISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASE 751
D++ A +G++ I + R KR E EG+ S +G K+ K +
Sbjct: 1770 DVEKATATPDGRELIIEEPRKRTKRFEENKDEGDSDGSEESGNRKRGAAEKRK----RRR 1825
Query: 752 GTSEDTFGSAPKRLRFERRNSESSDIQSVEK 782
G ED G R + + ++ VEK
Sbjct: 1826 GNDED--GDYSGSYRPDELATSKAEYFKVEK 1854
>FB|FBgn0086902 [details] [associations]
symbol:kis "kismet" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0007350 "blastoderm segmentation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0019730 "antimicrobial humoral
response" evidence=IMP] [GO:0007298 "border follicle cell
migration" evidence=IMP] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0007614 "short-term memory"
evidence=IMP] [GO:0046622 "positive regulation of organ growth"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0045892 GO:GO:0005875
EMBL:AE014134 GO:GO:0003677 GO:GO:0006200 GO:GO:0016322
GO:GO:0007031 GO:GO:0016887 GO:GO:0007298 GO:GO:0007614
GO:GO:0004386 GO:GO:0007379 GO:GO:0046622 GO:GO:0007476
GO:GO:0019730 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007350 InterPro:IPR023780
KO:K14437 GeneTree:ENSGT00560000077077 RefSeq:NP_001137761.1
UniGene:Dm.3182 ProteinModelPortal:B7Z002 SMR:B7Z002 STRING:B7Z002
EnsemblMetazoa:FBtr0299837 GeneID:33185 KEGG:dme:Dmel_CG3696
CTD:33185 FlyBase:FBgn0086902 OMA:TTFEMIV OrthoDB:EOG4BZKHC
PhylomeDB:B7Z002 GenomeRNAi:33185 NextBio:782323 Bgee:B7Z002
Uniprot:B7Z002
Length = 5517
Score = 935 (334.2 bits), Expect = 1.2e-93, Sum P(3) = 1.2e-93
Identities = 209/522 (40%), Positives = 313/522 (59%)
Query: 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
+K+ + P G LR YQLEGL W+ + N N ILADEMGLGKTIQ++ + + E
Sbjct: 2015 KKLEKTPVYKGGNSLRPYQLEGLNWLKFSWYNTHNCILADEMGLGKTIQSLTFVHSVYEY 2074
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF--SERGR-- 215
G+ GP +++AP + +PNW EF W + VVY G ++ +++ E++ +E G+
Sbjct: 2075 -GIRGPFLVIAPLSTIPNWQREFEGWT-DMNVVVYHGSVTSKQMIQDYEYYYKTESGKVL 2132
Query: 216 -----FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLL 270
FNVLIT +++I+ D LK W ++DE HRLKN C L + + ++ R+L
Sbjct: 2133 KEPIKFNVLITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVL 2192
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLH 330
L+GTP+QN++ EL+SLLNFL P+ F+S E F F G + T+EE + +L
Sbjct: 2193 LSGTPLQNNISELFSLLNFLEPSQFSSQEEFMSEF-------GSLR-TEEE----VNKLQ 2240
Query: 331 HVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSK-- 388
+++P +LRR KD+VEK L K + I++ +++ QK YY+ + + L GT +
Sbjct: 2241 ALLKPMMLRRLKDDVEKSLAPKEETIIEVELTNIQKKYYRGILEQNFSFLKKGTTSANIP 2300
Query: 389 SLQNLSMQLRKCCNHPYLFVG-----EYNMWRK---------EEIIRASGKFELLDRLLP 434
+L N M+LRKCC HPYL G +Y+ + + +I ++GK L+D+LLP
Sbjct: 2301 NLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGEDPESYYKNLILSAGKMVLIDKLLP 2360
Query: 435 KLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494
KL+ +GHRVL+FSQM R +DILE YL + F R+DG + R + +++ P S F
Sbjct: 2361 KLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRF 2420
Query: 495 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554
+FLL T+AGGLG+NL ADTVII+DSDWNPQ D QA+ R HRIGQ+K V+++ L+ +
Sbjct: 2421 VFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQRKMVKIYRLLCRNTY 2480
Query: 555 EEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREML--KEI 594
E + ++A K+G+D V+Q+ NT + + L KEI
Sbjct: 2481 EREMFDKASMKLGLDKAVLQS--MNTQGSKDGNNKQLSKKEI 2520
Score = 50 (22.7 bits), Expect = 1.2e-93, Sum P(3) = 1.2e-93
Identities = 30/166 (18%), Positives = 61/166 (36%)
Query: 592 KEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPE 651
+E+ + + LG D + +N ++ L +K E+ +K Y + + +D+ +
Sbjct: 2482 REMFDKASMKLGLDKAVLQSMNTQGSKDGNNKQLSKKEIEDLLKKGAYGAVMDDDNAGDK 2541
Query: 652 WAYSAPDN--KEEQKGF----EKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQ 705
+ D+ K + EKG +S R ++ D +W K V+
Sbjct: 2542 FCEEDIDSILKRRTQVITMESEKGSTFSKASFAASGNRSDITIDDPDFWTKWAKKVDIDP 2601
Query: 706 DISK-------LSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNE 744
D + + + +RR + G+E E N + E
Sbjct: 2602 DACERDETEDLVLSEPRRRTQIKRYGHEDVMELNSEESSNENSDEE 2647
Score = 47 (21.6 bits), Expect = 2.4e-93, Sum P(3) = 2.4e-93
Identities = 31/118 (26%), Positives = 47/118 (39%)
Query: 678 TGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEG------NESAS-- 729
T + K ++ + T++ W + N + +S S RG+ S G ++ AS
Sbjct: 4150 TERAKLHALLNSSTMAPKDWESEIANMEALSGSSGRGRGGNSSASSGMQPPPAHQHASLS 4209
Query: 730 -NSTGAEKKNL--DMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSE 784
S+G K MK P S G D S PK E S SS +++ SE
Sbjct: 4210 RQSSGQFSKPAVPAMKT---PPPSMGAPMDLSSSLPKMNMTEMLKSASSS-GAIDLSE 4263
Score = 40 (19.1 bits), Expect = 1.2e-93, Sum P(3) = 1.2e-93
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 88 GQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKT 147
GQ Q +A + VT QP ++ + + Q Q + +++N I+ G T
Sbjct: 603 GQ-QPQTAQQQVVPPVTSQPPVVAASQQQQQQQHQQQSLNDQLQHSINDIVGGGNSSGAT 661
Score = 40 (19.1 bits), Expect = 1.3e-92, Sum P(3) = 1.3e-92
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 711 STRGKRREYLPSEGNESASNSTGAEKKN 738
STR R S N S + +GAE++N
Sbjct: 5489 STRHTRSSADASTLNLSTGSESGAEERN 5516
Score = 38 (18.4 bits), Expect = 1.9e-93, Sum P(3) = 1.9e-93
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 85 LLEGQRQYNSAIHSIEEKVTEQPTLLQGGE 114
LL+G R+ + I ++K ++Q + + E
Sbjct: 1902 LLKGDRRVAAKIRRFQQKQSQQLNIFENIE 1931
Score = 38 (18.4 bits), Expect = 2.1e-92, Sum P(3) = 2.1e-92
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 726 ESASNSTGAEKKNLDMKNEIFPLASE 751
++A+ A +K +KNE+ L E
Sbjct: 3646 KAAATEKAAAEKAASVKNEVIDLDDE 3671
Score = 38 (18.4 bits), Expect = 2.1e-92, Sum P(3) = 2.1e-92
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 714 GKRREYLPSEGNESASNSTGAEKKNLDMK----NEIFPLASEGTSEDTFGS 760
G + S+ + ++S+S+ ++KK + NE LA+ S T GS
Sbjct: 4801 GSGKSQAQSQSSATSSSSSASKKKQQQQQQQAQNEAAQLAA-AISASTGGS 4850
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 934 (333.8 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 219/523 (41%), Positives = 316/523 (60%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P L+G L YQLEGL ++ ++ + ILADEMGLGKTIQ+IAL+A L E + P
Sbjct: 266 PEFLKG-LLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIALLASLFEENLI--P 322
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF--------------- 210
H+++AP + L NW EF+TWAP + V+Y G R +RE EF+
Sbjct: 323 HLVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQ 382
Query: 211 --SE----RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264
SE R +F+VL+T Y++I D LK ++W MIVDEGHRLKN + L +++ Y
Sbjct: 383 ISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYS 442
Query: 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLL 324
R+LLTGTP+QN+L EL+ L++FL F S+E F+E FKD Q EEQ
Sbjct: 443 SNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQE----EFKDINQ-----EEQ-- 491
Query: 325 IIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT 384
I RLH ++ P +LRR K +V K +P K ++IL+ D+S+ QK YY+ + L
Sbjct: 492 -ISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYYKAIFTRNYQVLTKKG 550
Query: 385 GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK-----EEIIRASGKFELLDRLLPKLRKS 439
G SL N+ M+LRK C HPY+ G + ++++ + GK +LLD+++ KL++
Sbjct: 551 GAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAFKQLLESCGKLQLLDKMMVKLKEQ 610
Query: 440 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 499
GHRVL+++Q ++D+LE Y +++ R+DG ER + +FNA +S F FLLS
Sbjct: 611 GHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLS 670
Query: 500 TRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVIL 559
TRAGGLG+NL TADTVII+DSDWNP D QA RAHR+GQ +V ++ L++ G+IEE ++
Sbjct: 671 TRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMM 730
Query: 560 ERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSL 602
+ K+KM ++ V+ G T + Q E L +I+R G+ L
Sbjct: 731 QLTKKKMVLEHLVV--GKLKTQNINQ---EELDDIIRYGSKEL 768
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 890 (318.4 bits), Expect = 1.0e-92, Sum P(2) = 1.0e-92
Identities = 195/511 (38%), Positives = 308/511 (60%)
Query: 115 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 174
L+ +Q+EG W+ + + + +LADEMGLGKTIQ+IA + YL ++ G+ GP ++VAP +
Sbjct: 898 LKEFQVEGFLWLSYCWYHCRSSLLADEMGLGKTIQSIAFLQYLSQSVGIKGPFLVVAPLS 957
Query: 175 VLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGR--FNVLITHYDLIMRDRQY 232
L NW E W + +V+ G + R + + F + F VL+T Y+ IM D
Sbjct: 958 TLGNWHKEILKWT-KMKTLVFYGSQETRGFISKYEFKHKDTYLFEVLLTTYETIMSDHSS 1016
Query: 233 LKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLP 292
+V W +I+DEGHR+KN + + + + + ++LTGTP+QN ++ELW++LNFL P
Sbjct: 1017 FVRVPWRALILDEGHRIKNDKSKVLSKLKSIKTEHSIILTGTPLQNDMKELWTMLNFLDP 1076
Query: 293 TIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGK 352
FNS + F + + D L +E Q + +LH ++ P++LRR K++VE +P K
Sbjct: 1077 DKFNSCQEFLD----EYSD-----LKEESQ---VSKLHQLLSPYLLRRMKEDVELSIPIK 1124
Query: 353 SQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKS----LQNLSMQLRKCCNHPYLFV 408
+ +++ ++S+ QK YY+ + + R L G K K+ L N+ +Q+RK CNHP+L
Sbjct: 1125 EETVIQVELSSTQKTYYRAILERNREFLSRGI-KQKTNLPKLSNIMIQIRKVCNHPFLIP 1183
Query: 409 G-EYNMWRKEEI----------IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILE 457
G E ++ ++E+I +++S K L+D+LL +L+ GH+VL+FSQM ++ILE
Sbjct: 1184 GAEESIVKQEKIAGDEELGELLVKSSSKLVLVDKLLQRLKAEGHQVLIFSQMVESLNILE 1243
Query: 458 IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII 517
YL+ ++ + RLDGS K+E R + +F + F+FLLSTRAGG+G+NL TADTVI+
Sbjct: 1244 DYLQYREYTYERLDGSIKSEVRQASIDRFQDKGANRFVFLLSTRAGGVGINLTTADTVIL 1303
Query: 518 FDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGL 577
FDSDWNPQ D QA+ R HRIGQ V+V+ L++ + EE + E A +K+ +D V+
Sbjct: 1304 FDSDWNPQSDLQAQARCHRIGQTNNVKVYRLITRNTYEEYLFECATKKLLLDHIVL---- 1359
Query: 578 FNTTSTAQDRREMLKEIMRRGTSSLGTDVPS 608
ST +D+++ + TSS T S
Sbjct: 1360 ----STNKDKKQTNTTPISTTTSSSSTTTAS 1386
Score = 86 (35.3 bits), Expect = 1.0e-92, Sum P(2) = 1.0e-92
Identities = 39/163 (23%), Positives = 72/163 (44%)
Query: 584 AQDRREMLK-EIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSR 642
+ D+ +K E + T S + E+++ + ++E +K+DE + + EN
Sbjct: 1870 SNDKETQIKVEEKEKSTESKSSS-NDEKDVCEKVEKGEKEI-SSDKVDENKEKVENN--- 1924
Query: 643 LMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLS-DLQWMKAV 701
E V E + DN E+ EK +E S K K E D S D + K
Sbjct: 1925 --EKVNVDE---KSKDN-EKSNDSEKSKDNEKSKDDEKSKDDEKSKDDEKSQDDEKSKDD 1978
Query: 702 ENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNE 744
E +D K + E P E ++ + +++ +EK+++++K E
Sbjct: 1979 EKSKDDEKSKLEENQDESTPMEVDKESKSTSSSEKQSIEIKEE 2021
Score = 76 (31.8 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 37/161 (22%), Positives = 70/161 (43%)
Query: 629 MDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVY 688
++E + + + ++ E + E S+ D K+ + EKG SS + K K V
Sbjct: 1865 IEEPKSNDKETQIKVEEKEKSTESKSSSNDEKDVCEKVEKGEKEISSDKVDENKEK-VEN 1923
Query: 689 ADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASN---STGAEKKNLDMKNEI 745
+ ++ + K E D K K ++ S+ +E + + S EK D K++
Sbjct: 1924 NEKVNVDEKSKDNEKSNDSEKSKDNEKSKDDEKSKDDEKSKDDEKSQDDEKSKDDEKSKD 1983
Query: 746 FPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHK 786
+ ++D S P + E +++ SS+ QS+E E K
Sbjct: 1984 DEKSKLEENQDE--STPMEVDKESKSTSSSEKQSIEIKEEK 2022
Score = 54 (24.1 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 695 LQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTS 754
L+ K+ + Q LS G + GN+S+S+ G+ ++ + ++ I + +
Sbjct: 1673 LKQRKSEKKSQFSGSLSGIGGQSSNKLGGGNQSSSSGGGSSGQSTNAQS-IINASWNKSQ 1731
Query: 755 EDTFGSAPKRLRFERRNSESSDI--QSVEKS 783
+D F S ++ F R S++ QSV KS
Sbjct: 1732 KDKFKSILLKVGFHRWKKIQSELATQSVLKS 1762
Score = 49 (22.3 bits), Expect = 8.0e-89, Sum P(2) = 8.0e-89
Identities = 25/169 (14%), Positives = 72/169 (42%)
Query: 579 NTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKEN 638
N+++ Q +++ ++I + SL + ++ +++ + + + + M +++ +
Sbjct: 2294 NSSTNQQQQQQQSEKIP--SSESLRRRI--QKVTDQILKKEHSDMIMKQHMAQQKLHQLQ 2349
Query: 639 YRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWM 698
+ ++ E E N++ Q G + S + K+K + D +S +
Sbjct: 2350 LQQQMKEQKEKEFQQQQNQPNQQNQPGQQNQQTQHGHSGSHKQKYSNDYFDDFVSRSDF- 2408
Query: 699 KAVENGQDISKLST----RGKRREYLPSEGNESASNSTGAEKKNLDMKN 743
+G DIS + + K+ ++ + N +++N+ + N + N
Sbjct: 2409 ----SGGDISDVEIDDYIKSKKMKHSHNSSNNNSNNNNNSNSNNNNNNN 2453
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 200/458 (43%), Positives = 281/458 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKT+QTI + Y L +G + GP+++
Sbjct: 671 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFL-YSLYKEGHSKGPYLVS 729
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS------ERGR--------- 215
AP + + NW EF WAP V Y G + R +RE FS G+
Sbjct: 730 APLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEV 789
Query: 216 ---FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++ Y+I +LLLT
Sbjct: 790 QIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLT 849
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 850 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 897
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 898 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLL 957
Query: 392 NLSMQLRKCCNHPYLF--------VGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + ++++SGK LL ++L KLR GHRV
Sbjct: 958 NIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRV 1017
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1018 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAG 1077
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKK 541
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K
Sbjct: 1078 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNK 1115
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
Identities = 200/458 (43%), Positives = 281/458 (61%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKT+QTI + Y L +G + GP+++
Sbjct: 697 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFL-YSLYKEGHSKGPYLVS 755
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS------ERGR--------- 215
AP + + NW EF WAP V Y G + R +RE FS G+
Sbjct: 756 APLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEV 815
Query: 216 ---FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
F+VL+T Y+LI D+ L ++W ++VDE HRLKN++ + ++ Y+I +LLLT
Sbjct: 816 QIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLT 875
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P FN++E F E F D ++ E+Q I++LH +
Sbjct: 876 GTPLQNNLEELFHLLNFLTPERFNNLEGFLE----EFAD-----ISKEDQ---IKKLHDL 923
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L++ G G SL
Sbjct: 924 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLL 983
Query: 392 NLSMQLRKCCNHPYLF--------VGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V + ++++SGK LL ++L KLR GHRV
Sbjct: 984 NIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRV 1043
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1044 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAG 1103
Query: 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKK 541
GLG+NL TADTVII+DSDWNP D QA RAHRIGQ K
Sbjct: 1104 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQTK 1141
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 870 (311.3 bits), Expect = 5.2e-89, Sum P(4) = 5.2e-89
Identities = 200/514 (38%), Positives = 306/514 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I + Y + KG+ GP +++AP
Sbjct: 966 KLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPL 1024
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE-RGR-------FNVLITHY 223
+ +PNW EF TW + VVY G R+ ++ E +F + +GR F+ +IT +
Sbjct: 1025 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQSYEMYFKDPQGRVIKGSYKFHAIITTF 1083
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L+ + W +++DE HRLKN C L + + ++ ++LLTGTP+QN+++EL
Sbjct: 1084 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1143
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRLHHVIRPFILRRKK 342
+SLL+FL P+ F S F + F K QV L + +++RRL + + +++
Sbjct: 1144 FSLLHFLEPSRFPSETTFMQEFG-DLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEE 1202
Query: 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+E L I K ++ + + T + + G G +L N M+LRKCCN
Sbjct: 1203 TIIEVELTN----IQK---KYYRAILEKNFTFLSKGG---GQANVPNLLNTMMELRKCCN 1252
Query: 403 HPYLFVGE-----------YNM----WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFS 447
HPYL G +N ++ + +I+A+GK L+D+LLPKL+ GHRVL+FS
Sbjct: 1253 HPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFS 1312
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+
Sbjct: 1313 QMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI 1372
Query: 508 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 567
NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+++ L++ S E + ++A K+G
Sbjct: 1373 NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLG 1432
Query: 568 IDAKVIQA--GLFNTTSTAQD-RREMLKEIMRRG 598
+D V+Q+ G N T+ Q ++ +++++R+G
Sbjct: 1433 LDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKG 1466
Score = 51 (23.0 bits), Expect = 6.2e-88, Sum P(3) = 6.2e-88
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 626 FEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEK-GFGHESSSITGK 680
F++ DE+ K R+ + E+ E+A S P++KEE G ES++ G+
Sbjct: 1847 FDREDEDPEYKPT-RTPFKD--EIDEFANSPPEDKEEAMDIRTTGKPSESTAELGQ 1899
Score = 48 (22.0 bits), Expect = 5.2e-89, Sum P(4) = 5.2e-89
Identities = 27/102 (26%), Positives = 39/102 (38%)
Query: 648 EVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRK-----EVVYADTLSDLQWMKAVE 702
+ P SA +E+ G +G G ES S+ + K + E V Q +A E
Sbjct: 2151 QTPAILSSAHVQEEKATGQSEGKGEESGSVATQEKTEGKEDDEEVDGGEKDSKQGCEA-E 2209
Query: 703 NGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNE 744
G S+L + P +E S EK D K+E
Sbjct: 2210 AGSVRSELKGMEVTADTGPKSISEKGSEEDEEEKLEDDDKSE 2251
Score = 39 (18.8 bits), Expect = 5.2e-89, Sum P(4) = 5.2e-89
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 610 REINRLAARSDEE----FWLFEKMDEERRQKENYRSRLM 644
R + R+ + D+E + E + EER + YR L+
Sbjct: 2022 RRVCRMPTKPDDEPPDLSSMIEPITEERASRTLYRIELL 2060
Score = 39 (18.8 bits), Expect = 5.2e-89, Sum P(4) = 5.2e-89
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 733 GAEKKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHKGVQGSG 792
GA ++ K+EI A+ + T G P + + + +Q+++ + +Q +G
Sbjct: 2711 GASRRGRRPKSEIARAAAAAAAASTSGINPLLVNSLFAGMDLTSLQNLQNLQ--SLQLAG 2768
Query: 793 LNG 795
L G
Sbjct: 2769 LMG 2771
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
Identities = 189/459 (41%), Positives = 291/459 (63%)
Query: 216 FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTP 275
++V +T Y+++++++ KK W Y+++DE HR+KN + L++ + ++ RLLLTGTP
Sbjct: 1 WDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTP 60
Query: 276 IQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 335
+QN+L ELWSLLNFLLP +FNS ++F+ WF+ L D++ ++ RLH V+RP
Sbjct: 61 LQNNLHELWSLLNFLLPDVFNSADDFDSWFDT------NNCLGDKK---LVERLHMVLRP 111
Query: 336 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQ--NL 393
F+LRR K +VEK LP K +V + +S Q+ +Y ++ + + + GK ++ N+
Sbjct: 112 FLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKDIDILNSAGKMDKMRLLNI 170
Query: 394 SMQLRKCCNHPYLFVGEYN--MWRKE-EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMT 450
MQLRKCCNHPYLF G + + ++ SGK +LD+LLPKL++ G RVL+FSQMT
Sbjct: 171 LMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 230
Query: 451 RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 510
R++DILE Y ++++ RLDG T +ER + +N P+S F+F+LSTRAGGLG+NL
Sbjct: 231 RVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLA 290
Query: 511 TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 570
TAD VI++DSDWNPQ+D QA DRAHRIGQ K VRVF ++ ++EE I+ERA+ K+ +D+
Sbjct: 291 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDS 350
Query: 571 KVIQAG-LFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REINRLAARSDEEFWLF 626
VIQ G L + + EML +++R G + + SE +I+ + R ++
Sbjct: 351 IVIQQGRLVDQNLNKIGKDEML-QMIRHGATHVFASKESEITDEDIDGILERGAKKT--- 406
Query: 627 EKMDEE-RRQKENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
+M+E+ + E+ D E + + D +E+QK
Sbjct: 407 AEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQK 445
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
Identities = 224/634 (35%), Positives = 349/634 (55%)
Query: 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172
G L YQLEGL ++ ++ N ILADEMGLGKTIQ+IA +A L E PH++VAP
Sbjct: 223 GTLHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASLFEEN--LSPHLVVAP 280
Query: 173 KAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSERGR---FNVLITHYDLIMR 228
+ + NW EF+TWAP + V+Y G + R + E EF+ GR F+VL+T Y+++
Sbjct: 281 LSTIRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLTTYEMVHP 340
Query: 229 DRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLN 288
L ++W MI+DEGHRLKN + L ++S + + +LLTGTP+QN+L EL++L++
Sbjct: 341 GISVLSPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFALMH 400
Query: 289 FLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR-KKDEVEK 347
FL F S+E F++ + EEQ I RLH ++ P +LRR KKD ++
Sbjct: 401 FLDADKFGSLEKFQD-------------INKEEQ---ISRLHQMLAPHLLRRLKKDVLKD 444
Query: 348 YLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYL- 406
+P K ++IL+ DMS+ QK Y+ V + T +K + N+ M+LR+ C+HPYL
Sbjct: 445 KVPPKKELILRVDMSSQQKEVYKAVI-TNNYQVLTKKRDAK-ISNVLMKLRQVCSHPYLL 502
Query: 407 --FVGEYNMWRKE--EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL 462
F + + +++ ASGK +LLD+++ KL++ GHRVL+++Q + +LE Y
Sbjct: 503 PDFEPRFEDANEAFTKLLEASGKLQLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTF 562
Query: 463 NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW 522
++ + R+DG ER + +FNA +S F FLLSTRAGG+G+NL TADTVII+DSDW
Sbjct: 563 KNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDW 622
Query: 523 NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTS 582
NP D QA R HR+GQ +V ++ L+ G++EE ++E K KM ++ V+
Sbjct: 623 NPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITKNKMLLEHLVV-----GKQH 677
Query: 583 TAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEF-WLFEK--MDE-ERRQKEN 638
QD L +I++ G+ L ++ E + D L ++ +D E +
Sbjct: 678 LCQDE---LDDIIKYGSKELFSEENDEAGRSGKIHYDDAAIEQLLDRNHVDAVEVSLDDE 734
Query: 639 YRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWM 698
+ +++ +V + Y D++ E E+ E++S R + D L D +
Sbjct: 735 EETDFLKNFKVASFEYV--DDENEAAALEEAQAIENNSSVRNADRTSH-WKDLLKDKYEV 791
Query: 699 KAVENGQDISKLSTRGKRREYLPSE--GNESASN 730
+ E + K GK+ Y + G E S+
Sbjct: 792 QQAEELSALGKRKRNGKQVMYAEDDLDGLEEISD 825
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 870 (311.3 bits), Expect = 8.8e-89, Sum P(3) = 8.8e-89
Identities = 200/514 (38%), Positives = 306/514 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I + Y + KG+ GP +++AP
Sbjct: 956 KLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPL 1014
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE-RGR-------FNVLITHY 223
+ +PNW EF TW + VVY G R+ ++ E +F + +GR F+ +IT +
Sbjct: 1015 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 1073
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L+ + W +++DE HRLKN C L + + ++ ++LLTGTP+QN+++EL
Sbjct: 1074 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1133
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRLHHVIRPFILRRKK 342
+SLL+FL P+ F S F + F K QV L + +++RRL + + +++
Sbjct: 1134 FSLLHFLEPSRFPSETTFMQEFG-DLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEE 1192
Query: 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+E L I K ++ + + T + + G G +L N M+LRKCCN
Sbjct: 1193 TIIEVELTN----IQK---KYYRAILEKNFTFLSKGG---GQANVPNLLNTMMELRKCCN 1242
Query: 403 HPYLFVGE-----------YNM----WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFS 447
HPYL G +N ++ + +I+A+GK L+D+LLPKL+ GHRVL+FS
Sbjct: 1243 HPYLINGAEEKILEEFKDAHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFS 1302
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+
Sbjct: 1303 QMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI 1362
Query: 508 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 567
NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+++ L++ S E + ++A K+G
Sbjct: 1363 NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLG 1422
Query: 568 IDAKVIQA--GLFNTTSTAQD-RREMLKEIMRRG 598
+D V+Q+ G N T+ Q ++ +++++R+G
Sbjct: 1423 LDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKG 1456
Score = 50 (22.7 bits), Expect = 8.8e-89, Sum P(3) = 8.8e-89
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 626 FEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSS 676
F++ DE+ K R+ + E+ E+A S P++KE+ + H S+
Sbjct: 1837 FDREDEDPEYKPT-RAPFKD--EIDEFANSPPEDKEDSMEAQSTGKHSESN 1884
Score = 48 (22.0 bits), Expect = 8.8e-89, Sum P(3) = 8.8e-89
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 750 SEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHKGVQGSG 792
S+G E+ K R E +E+S + K E KGV+GSG
Sbjct: 2176 SDGKEEEEEAGGAKDSRQECE-AEASSV----KGELKGVEGSG 2213
Score = 41 (19.5 bits), Expect = 7.8e-88, Sum P(3) = 7.8e-88
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 610 REINRLAARSDEE----FWLFEKMDEERRQKENYRSRLM 644
R + R+ A+ ++E L E + EER + YR L+
Sbjct: 2012 RRVCRMPAKPEDEPPDLASLIEPITEERASRTLYRIELL 2050
>RGD|1594200 [details] [associations]
symbol:LOC680231 "similar to chromodomain helicase DNA binding
protein 9" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:1594200 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 OrthoDB:EOG4548XQ IPI:IPI00957597
Ensembl:ENSRNOT00000018201 Uniprot:D3ZVE2
Length = 2881
Score = 861 (308.1 bits), Expect = 3.6e-88, Sum P(4) = 3.6e-88
Identities = 213/565 (37%), Positives = 320/565 (56%)
Query: 90 RQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQ 149
RQ + +I +K+ + G +LR YQLEGL W+L + N N ILADEMGLGKTIQ
Sbjct: 834 RQLDRPPSNIWKKIDQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQ 893
Query: 150 TIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--E 207
+I + +L G+ GP +I+AP + + NW EF TW I VVY G R+ ++ E
Sbjct: 894 SITFLYEVLLT-GIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYE 951
Query: 208 EFFSE------RG--RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKT 259
+F + RG RF +IT +++I+ L ++W +I+DE HRLKN C L +
Sbjct: 952 MYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEG 1011
Query: 260 ISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTD 319
+ ++ ++LLTGTP+QN+++EL+SLL+FL P F S E F F D L
Sbjct: 1012 LKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPS----ESTFMQEFGD-----LKT 1062
Query: 320 EEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRV 378
EEQ+ ++ + + + R K+D ++ P + +I + +K Y + + +
Sbjct: 1063 EEQVQKLQAILKPM--MLRRLKEDVEKRLAPKEETIIEVELTNIQKKYYRAILEKNFSFL 1120
Query: 379 GLDTGTGKSKSLQNLSMQLRKCCNHPYLF-------VGE----YNM----WRKEEIIRAS 423
G +L N M+LRKCCNHPYL +GE YN + + +I+++
Sbjct: 1121 SKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKIIGEFRDTYNPSASDFHLQAMIQSA 1180
Query: 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 483
GK L+D+LLPK++ GH+VL+FSQM R +DILE YL + + R+DG + R +
Sbjct: 1181 GKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAI 1240
Query: 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543
+F+ PDS F+FLL TRAGGLG+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V
Sbjct: 1241 DRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAV 1300
Query: 544 RVFVLVSVGSIEEVILERAKQKMGIDAKVIQA--GLFNTTSTAQD-RREMLKEIMRRGTS 600
+V+ LV+ S E + +RA K+G+D V+Q+ G + S Q ++ +++++RRG
Sbjct: 1301 KVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRDSNVSGIQQLSKKEIEDLLRRG-- 1358
Query: 601 SLGTDVPSEREINRLAARSDEEFWL 625
+ G + E E ++ ++ L
Sbjct: 1359 AYGAIMEEEDEGSKFCEEDIDQILL 1383
Score = 51 (23.0 bits), Expect = 5.9e-87, Sum P(3) = 5.9e-87
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 705 QDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKR 764
+ +S + TR + + S N S + G +K + + +A+ T T A K+
Sbjct: 2063 ESMSSMETRTRVKSEPVSPKNGVLSQAPGEQKSGGKSETDRRMVAAR-TEPLTPNPASKK 2121
Query: 765 LRFERRNSESS 775
R +R SESS
Sbjct: 2122 QRVHKRGSESS 2132
Score = 45 (20.9 bits), Expect = 3.6e-88, Sum P(4) = 3.6e-88
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 659 NKEEQKGFEKGFGHESSSITGKRKRKE 685
+K + G E G++S + GK++R E
Sbjct: 2722 SKTAESGAEGKKGNDSKELEGKKERTE 2748
Score = 45 (20.9 bits), Expect = 2.5e-86, Sum P(3) = 2.5e-86
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 748 LASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHKGVQGSGLN 794
L + G D+ KR R RRN E +DI + +++ +G+N
Sbjct: 2415 LGANGAILDSQPIVKKR-RGRRRNVEGADILFLNRNKPPNHISTGMN 2460
Score = 43 (20.2 bits), Expect = 3.2e-86, Sum P(3) = 3.2e-86
Identities = 25/105 (23%), Positives = 46/105 (43%)
Query: 702 ENGQDISKLSTRGKRRE-YLPSEGNES------ASNSTGAEKKNLDMK-----NEIFP-- 747
+ G D +L + +R E P G E +++ST A K L + N ++P
Sbjct: 2732 KKGNDSKELEGKKERTESQSPENGGERCVPGSPSTSSTAAATKPLALNPLLLSNMLYPGM 2791
Query: 748 LASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHKGVQGSG 792
L + G + + + F+ + ++SSD++S + E K G
Sbjct: 2792 LLTPGLNLH-LPALSQSNTFDVQKNKSSDLESSKSVEIKEEDSRG 2835
Score = 42 (19.8 bits), Expect = 3.6e-88, Sum P(4) = 3.6e-88
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 693 SDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEK 736
SDL+ K+VE ++ S+ + ++ PS NE++++ G+E+
Sbjct: 2818 SDLESSKSVEIKEEDSRGRDQEEKGGTEPSPLNENSTDE-GSER 2860
Score = 39 (18.8 bits), Expect = 3.6e-88, Sum P(4) = 3.6e-88
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 595 MRRGTSSLGTDVPSEREINR 614
++ GT G D P ++++R
Sbjct: 2483 LKDGTRLAGDDAPKRKDLDR 2502
Score = 38 (18.4 bits), Expect = 4.6e-88, Sum P(4) = 4.6e-88
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 598 GTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYR 640
G +SL D P R+ R + + +E + + E +K R
Sbjct: 1438 GRNSLVIDTPRIRKQTRPFSATKDELAELSEAESEGEEKPKLR 1480
>UNIPROTKB|H9L0N0 [details] [associations]
symbol:H9L0N0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02032856 EMBL:AADN02032857
EMBL:AADN02032858 EMBL:AADN02032859 EMBL:AADN02032860
EMBL:AADN02032861 EMBL:AADN02032862 EMBL:AADN02032863
EMBL:AADN02032864 EMBL:AADN02032865 Ensembl:ENSGALT00000023599
Uniprot:H9L0N0
Length = 1444
Score = 872 (312.0 bits), Expect = 6.9e-88, Sum P(2) = 6.9e-88
Identities = 204/488 (41%), Positives = 292/488 (59%)
Query: 105 EQPTLLQGG---ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
+QP + G ELR YQL GL W+ + + ILADEMGLGKTIQTI+ + YL
Sbjct: 143 KQPFYIGGRDCLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 202
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR-EEFF---SERGRFN 217
+ GP ++V P + L +W E TWAP + AVVY G R +R E+ ++R +FN
Sbjct: 203 ELYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFN 262
Query: 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
+L+T Y+++++D+ +L + W+++ +DE HRLKN + L KT+ ++ RLL+TGTP+Q
Sbjct: 263 ILLTTYEILLKDKSFLGGLNWVFIGIDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 322
Query: 278 NSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337
NSL+ELWSLL+F++P F+S E+FEE + ++ G +L H + PF+
Sbjct: 323 NSLKELWSLLHFIMPEKFSSWEDFEEE-HGKGREFGYASL------------HKELEPFL 369
Query: 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQ 396
LRR K +VEK LP K + IL+ +MSA QK YY+ + L G+ G + N+ M+
Sbjct: 370 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 429
Query: 397 LRKCCNHPYLFV--GEYNMWRKEE----IIRASGKFELLDRLLPKLRKSGHRVLLFSQMT 450
L+KCCNH YL + + K+E +IR+SGK LLD+LL +LR+ G+RVL+FSQM
Sbjct: 430 LKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMV 489
Query: 451 RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSP----YFMFLLSTRAGGLG 506
R++DIL YLK F F RLDGS K E R L FNA S F + L+ ++ L
Sbjct: 490 RMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSENLTSLFCYHLTRKSLTLK 549
Query: 507 LNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM 566
+L+ + I WNP A + I KK+V ++ LV+ GS+EE ILERAK+KM
Sbjct: 550 THLRNGHNIDIIAFFWNPCSCINACFLSLNILTKKQVNIYRLVTKGSVEEDILERAKKKM 609
Query: 567 GIDAKVIQ 574
+D VIQ
Sbjct: 610 VLDHLVIQ 617
Score = 42 (19.8 bits), Expect = 6.9e-88, Sum P(2) = 6.9e-88
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 626 FEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEK 668
F MDE+ + E ++ + +PE + + +E QK E+
Sbjct: 700 FSNMDEDDIELEPEQNLRNWEEIIPEVQWRRIEEEERQKELEE 742
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 857 (306.7 bits), Expect = 1.2e-87, Sum P(4) = 1.2e-87
Identities = 212/557 (38%), Positives = 316/557 (56%)
Query: 98 SIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYL 157
+I +K+ + G +LR YQLEGL W+L + N N ILADEMGLGKTIQ+I + +
Sbjct: 842 NIWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI 901
Query: 158 LENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE--- 212
L G+ GP +I+AP + + NW EF TW I VVY G R+ ++ E +F +
Sbjct: 902 LLT-GIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQG 959
Query: 213 ---RG--RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR 267
RG RF +IT +++I+ L + W +I+DE HRLKN C L + + ++
Sbjct: 960 RIIRGAYRFQAIITTFEMILGGCGELNAIDWRCVIIDEAHRLKNKNCKLLEGLKLMNLEH 1019
Query: 268 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIR 327
++LLTGTP+QN+++EL+SLL+FL P F S E F F D L EEQ+ ++
Sbjct: 1020 KVLLTGTPLQNTVEELFSLLHFLEPLRFPS----ESTFMQEFGD-----LKTEEQVQKLQ 1070
Query: 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGK 386
+ + + R K+D +K P + +I + +K Y + + + G
Sbjct: 1071 AILKPM--MLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTN 1128
Query: 387 SKSLQNLSMQLRKCCNHPYLF-------VGE----YNM----WRKEEIIRASGKFELLDR 431
+L N M+LRKCCNHPYL +GE YN + + +I+++GK L+D+
Sbjct: 1129 VPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPSASDFHLQAMIQSAGKLVLIDK 1188
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
LLPK++ GH+VL+FSQM R +DILE YL + + R+DG + R + +F+ PDS
Sbjct: 1189 LLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDS 1248
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
F+FLL TRAGGLG+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ LV+
Sbjct: 1249 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTR 1308
Query: 552 GSIEEVILERAKQKMGIDAKVIQA--GLFNTTSTAQD-RREMLKEIMRRGTSSLGTDVPS 608
S E + +RA K+G+D V+Q+ G + S Q ++ +++++RRG + G +
Sbjct: 1309 NSYEREMFDRASLKLGLDKAVLQSMSGRDSNVSGIQQLSKKEIEDLLRRG--AYGAIMEE 1366
Query: 609 EREINRLAARSDEEFWL 625
E E ++ ++ L
Sbjct: 1367 EDEGSKFCEEDIDQILL 1383
Score = 48 (22.0 bits), Expect = 1.2e-87, Sum P(4) = 1.2e-87
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 659 NKEEQKGFEKGFGHESSSITGKRKRKE 685
+K + G E+ G++S + GK++R E
Sbjct: 2721 SKTAESGAEEKRGNDSKELEGKKERTE 2747
Score = 45 (20.9 bits), Expect = 6.7e-86, Sum P(3) = 6.7e-86
Identities = 30/160 (18%), Positives = 52/160 (32%)
Query: 627 EKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNK--EEQKGFEKGFGHESSSITGKRKRK 684
E + EE + E ME + +P N + G +K G + R
Sbjct: 2049 ESLTEEPQSSEEESMSSMETRTRVKSEPVSPKNGVLSQATGDQKSGGKSETDRRMVAART 2108
Query: 685 EVVYADTLSDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNE 744
E + + S + + G S S R S + S+S+S+ +
Sbjct: 2109 EPLTPNPASKKP--RVHKRGSQSSSDSDSDSARSSCSSRSSSSSSSSSSCSHSRSGSSSS 2166
Query: 745 IFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSE 784
S +S + S+ + ES + V+K E
Sbjct: 2167 SSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEDVQKRE 2206
Score = 43 (20.2 bits), Expect = 1.1e-85, Sum P(3) = 1.1e-85
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 748 LASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHKGVQGSGLN 794
L + G D+ KR R RRN E +DI + +++ +G+N
Sbjct: 2414 LGANGAILDSQPIVKKR-RGRRRNVEGADILFLNRNKPPNHIPTGMN 2459
Score = 39 (18.8 bits), Expect = 1.2e-87, Sum P(4) = 1.2e-87
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 595 MRRGTSSLGTDVPSEREINR 614
++ GT G D P ++++R
Sbjct: 2482 LKDGTRLAGDDAPKRKDLDR 2501
Score = 38 (18.4 bits), Expect = 1.2e-87, Sum P(4) = 1.2e-87
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 694 DLQWMKAVENGQDISKLSTRGKRREYLPS--------EGNE---SASNSTGAEKKNLDMK 742
DL K+VE ++ S++ + ++ PS EG+E S S+S+ + ++ D
Sbjct: 2823 DLDSSKSVEIKEENSRVRDQEEKGGTEPSPLNENSTDEGSERASSGSDSSSSSSEDSDSS 2882
Query: 743 NE 744
NE
Sbjct: 2883 NE 2884
Score = 38 (18.4 bits), Expect = 1.6e-87, Sum P(4) = 1.6e-87
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 598 GTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYR 640
G +SL D P R+ R + + +E + + E +K R
Sbjct: 1438 GRNSLVIDTPRIRKQTRPFSATKDELAELSEAESEGEEKPKLR 1480
Score = 37 (18.1 bits), Expect = 3.6e-85, Sum P(3) = 3.6e-85
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 762 PKRLRFERRNSESSDIQSVEKSE 784
PK+ R RN DI S+ E
Sbjct: 2527 PKQKRHRCRNPNKLDINSLTGEE 2549
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 555 (200.4 bits), Expect = 1.7e-87, Sum P(2) = 1.7e-87
Identities = 125/321 (38%), Positives = 184/321 (57%)
Query: 104 TEQPTLL-QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG 162
TEQP++L Q L+ YQ GL W+ + + LNGILADEMGLGKTIQ IA +AYL + +G
Sbjct: 487 TEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EG 545
Query: 163 VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITH 222
GPH+IV P + + NW+ E + W P++ + Y G +ERK +R S +NV++T
Sbjct: 546 NKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTT 605
Query: 223 YDLIMR---DRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNS 279
Y+ + DR ++++ Y I DEGH LKN + + RLLLTGTP+QN+
Sbjct: 606 YNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNN 665
Query: 280 LQELWSLLNFLLPTIFNS-VENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338
L EL SLLNF++P +F+S F++ K + ++ ++E+ I +I+PFIL
Sbjct: 666 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKER---IAHAKQIIKPFIL 722
Query: 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLR 398
RR K+EV K LP K I C MS Q+ Y + + + ++ K+ + N+ MQLR
Sbjct: 723 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYMNLFNRLKKSINN-MEKNTEMCNVMMQLR 781
Query: 399 KCCNHPYLFVGEYNMWRKEEI 419
K NHP L Y + +E+
Sbjct: 782 KMANHPLLHRQYYTAEKLKEM 802
Score = 378 (138.1 bits), Expect = 1.7e-87, Sum P(2) = 1.7e-87
Identities = 84/200 (42%), Positives = 124/200 (62%)
Query: 396 QLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDI 455
+L C Y + + + ++I SGKF +L +L +L++ G RV+LFSQ T ++DI
Sbjct: 831 ELHVLCKQ-YRHINNFQL--DMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDI 887
Query: 456 LEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 515
LE+ LK + ++LRLDG T+ ER L+ +FN D F+FLLST+AGGLG+NL +A+ V
Sbjct: 888 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVV 946
Query: 516 IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 575
I+ D D NP D+QAEDR HR+GQ KEV V L+ G+IEE +L+ +QK+ ++ +
Sbjct: 947 ILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLIGQGTIEESMLKINQQKLKLEQDMTTV 1006
Query: 576 GLFNTTSTAQDRREMLKEIM 595
+ S D +LK M
Sbjct: 1007 DEGDEGSMPADIATLLKTSM 1026
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 864 (309.2 bits), Expect = 2.8e-87, Sum P(2) = 2.8e-87
Identities = 199/514 (38%), Positives = 304/514 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I + Y + KG+ GP +++AP
Sbjct: 153 KLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPL 211
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE-RGR-------FNVLITHY 223
+ +PNW EF TW + VVY G R+ ++ E +F + +GR F+ +IT +
Sbjct: 212 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 270
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L+ + W +++DE HRLKN C L + + ++ ++LLTGTP+QN+++EL
Sbjct: 271 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 330
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRLHHVIRPFILRRKK 342
+SLL+FL P F S F + F K QV L + +++RRL + + +++
Sbjct: 331 FSLLHFLEPGRFPSETTFMQEFG-DLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEE 389
Query: 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+E L I K ++ + + + + G G +L N M+LRKCCN
Sbjct: 390 TIIEVELTN----IQK---KYYRAILEKNFAFLSKGG---GQANVPNLLNTMMELRKCCN 439
Query: 403 HPYLFVGE-----------YNM----WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFS 447
HPYL G +N ++ + +I+A+GK L+D+LLPKL+ GHRVL+FS
Sbjct: 440 HPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFS 499
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+
Sbjct: 500 QMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGI 559
Query: 508 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 567
NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+++ L++ S E + ++A K+G
Sbjct: 560 NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLG 619
Query: 568 IDAKVIQA--GLFNTTSTAQD-RREMLKEIMRRG 598
+D V+Q+ G N T+ Q ++ +++++R+G
Sbjct: 620 LDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKG 653
Score = 40 (19.1 bits), Expect = 2.8e-87, Sum P(2) = 2.8e-87
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 610 REINRLAARSDEE----FWLFEKMDEERRQKENYRSRLM 644
R + R+ + D+E + E + EER + YR L+
Sbjct: 1211 RRVCRMPVKPDDEPPDLSTMIEPITEERASRTLYRIELL 1249
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 518 (187.4 bits), Expect = 3.1e-87, Sum P(2) = 3.1e-87
Identities = 119/312 (38%), Positives = 170/312 (54%)
Query: 103 VTEQPTLLQGG-ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK 161
+ EQP LL G +L YQ+ GL W+ + +NGILADEMGLGKTIQ IA +AYL EN
Sbjct: 276 IVEQPKLLSSGLQLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENG 335
Query: 162 GVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGR-FNVLI 220
H+IV P + L NW E S W P + Y G DER+ MR F + F+VL+
Sbjct: 336 LSQAAHLIVVPSSTLDNWEAEISRWCPELVVEKYHGSQDERRRMRGRFAKDGFTGFDVLL 395
Query: 221 THYDLI---MRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277
T Y ++ +R+ + + Y+I DE H LKN + + R+LLTGTP+Q
Sbjct: 396 TTYHIVGSTPEERKMFRVCKLDYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQ 455
Query: 278 NSLQELWSLLNFLLPTIF-NSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 336
N+L EL SLL F++P F S+E+ + F K G + Q I+R +++PF
Sbjct: 456 NNLLELISLLCFVMPKFFAKSIEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMKPF 515
Query: 337 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDV--GRVGLDTGTGKSKSLQNLS 394
+LRR K +V K LP K ++ K MS+ QK+YY ++ D G + + + +
Sbjct: 516 VLRRLKKDVLKNLPKKLSLVEKVPMSSQQKIYYHELVDYYSNNKGEVCSSSERAGIA-IM 574
Query: 395 MQLRKCCNHPYL 406
M++R+ NHP L
Sbjct: 575 MEMRRIANHPLL 586
Score = 419 (152.6 bits), Expect = 3.1e-87, Sum P(2) = 3.1e-87
Identities = 90/203 (44%), Positives = 131/203 (64%)
Query: 411 YNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRL 470
Y++ + +I SGKF LD LLPKL+ GHRVLLFSQ T ++DI+E YL++ F F RL
Sbjct: 639 YDVKIPDNLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRL 698
Query: 471 DGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQA 530
DG+T R L+ FN DS F+FLLST+AGG+G+NL ADT +I D D+NP D+QA
Sbjct: 699 DGATAVNVRQDLITDFNGDDS-IFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQA 757
Query: 531 EDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREM 590
EDR HR+GQ++ V ++ L+S +IEE IL A++K+ ++ + N ++R +
Sbjct: 758 EDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITS----NEKGEVHEQRCV 813
Query: 591 LKEIMRRGTSSLGTDVPSEREIN 613
+K + T++LG D E ++N
Sbjct: 814 VKLL----TTALGLDKDQEEQLN 832
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 864 (309.2 bits), Expect = 3.5e-87, Sum P(2) = 3.5e-87
Identities = 199/514 (38%), Positives = 304/514 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I + Y + KG+ GP +++AP
Sbjct: 205 KLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPL 263
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE-RGR-------FNVLITHY 223
+ +PNW EF TW + VVY G R+ ++ E +F + +GR F+ +IT +
Sbjct: 264 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 322
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L+ + W +++DE HRLKN C L + + ++ ++LLTGTP+QN+++EL
Sbjct: 323 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 382
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRLHHVIRPFILRRKK 342
+SLL+FL P F S F + F K QV L + +++RRL + + +++
Sbjct: 383 FSLLHFLEPGRFPSETTFMQEFG-DLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEE 441
Query: 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+E L I K ++ + + + + G G +L N M+LRKCCN
Sbjct: 442 TIIEVELTN----IQK---KYYRAILEKNFAFLSKGG---GQANVPNLLNTMMELRKCCN 491
Query: 403 HPYLFVGE-----------YNM----WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFS 447
HPYL G +N ++ + +I+A+GK L+D+LLPKL+ GHRVL+FS
Sbjct: 492 HPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFS 551
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+
Sbjct: 552 QMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGI 611
Query: 508 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 567
NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+++ L++ S E + ++A K+G
Sbjct: 612 NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLG 671
Query: 568 IDAKVIQA--GLFNTTSTAQD-RREMLKEIMRRG 598
+D V+Q+ G N T+ Q ++ +++++R+G
Sbjct: 672 LDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKG 705
Score = 55 (24.4 bits), Expect = 3.5e-87, Sum P(2) = 3.5e-87
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 626 FEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGK 680
F++ DE+ K R+ + E+ E+A S P++KEE ES+S G+
Sbjct: 1086 FDREDEDPEYKPT-RTPFKD--EIDEFANSPPEDKEESIEIHPNKHSESNSELGQ 1137
Score = 40 (19.1 bits), Expect = 1.3e-85, Sum P(2) = 1.3e-85
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 610 REINRLAARSDEE----FWLFEKMDEERRQKENYRSRLM 644
R + R+ + D+E + E + EER + YR L+
Sbjct: 1260 RRVCRMPVKPDDEPPDLSTMIEPITEERASRTLYRIELL 1298
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 552 (199.4 bits), Expect = 4.4e-87, Sum P(2) = 4.4e-87
Identities = 125/320 (39%), Positives = 184/320 (57%)
Query: 105 EQPTLL-QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
EQP++L Q L+ YQ GL W+ + + LNGILADEMGLGKTIQ IA +AYL + +G
Sbjct: 486 EQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EGN 544
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+IV P + + NW+ E + W P++ + Y G +ERK +R S+ +NV++T Y
Sbjct: 545 KGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTY 604
Query: 224 DLIMR---DRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSL 280
+ + DR ++++ Y I DEGH LKN + + RLLLTGTP+QN+L
Sbjct: 605 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNL 664
Query: 281 QELWSLLNFLLPTIFNS-VENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339
EL SLLNF++P +F+S F++ K + ++ ++E+ I +I+PFILR
Sbjct: 665 LELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILR 721
Query: 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRK 399
R K+EV K LP K I C MS Q+ Y + + + ++ KS + N+ MQLRK
Sbjct: 722 RVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINN-IEKSTEMCNVMMQLRK 780
Query: 400 CCNHPYLFVGEYNMWRKEEI 419
NHP L Y + +E+
Sbjct: 781 MANHPLLHRQYYTAEKLKEM 800
Score = 379 (138.5 bits), Expect = 4.4e-87, Sum P(2) = 4.4e-87
Identities = 80/174 (45%), Positives = 117/174 (67%)
Query: 396 QLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDI 455
+L C Y + + + ++I SGKF +L +L +L++ G RV+LFSQ T ++DI
Sbjct: 829 ELHVLCKQ-YRHINNFQL--DMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDI 885
Query: 456 LEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 515
LE+ LK + ++LRLDG T+ ER L+ +FN D F+FLLST+AGGLG+NL +A+ V
Sbjct: 886 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVV 944
Query: 516 IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGID 569
I+ D D NP D+QAEDR HR+GQ KEV V L+S G+IEE +L+ +QK+ ++
Sbjct: 945 ILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLE 998
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 552 (199.4 bits), Expect = 4.4e-87, Sum P(2) = 4.4e-87
Identities = 125/320 (39%), Positives = 184/320 (57%)
Query: 105 EQPTLL-QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
EQP++L Q L+ YQ GL W+ + + LNGILADEMGLGKTIQ IA +AYL + +G
Sbjct: 486 EQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EGN 544
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+IV P + + NW+ E + W P++ + Y G +ERK +R S+ +NV++T Y
Sbjct: 545 KGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTY 604
Query: 224 DLIMR---DRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSL 280
+ + DR ++++ Y I DEGH LKN + + RLLLTGTP+QN+L
Sbjct: 605 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNL 664
Query: 281 QELWSLLNFLLPTIFNS-VENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339
EL SLLNF++P +F+S F++ K + ++ ++E+ I +I+PFILR
Sbjct: 665 LELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILR 721
Query: 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRK 399
R K+EV K LP K I C MS Q+ Y + + + ++ KS + N+ MQLRK
Sbjct: 722 RVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINN-IEKSTEMCNVMMQLRK 780
Query: 400 CCNHPYLFVGEYNMWRKEEI 419
NHP L Y + +E+
Sbjct: 781 MANHPLLHRQYYTAEKLKEM 800
Score = 379 (138.5 bits), Expect = 4.4e-87, Sum P(2) = 4.4e-87
Identities = 80/174 (45%), Positives = 117/174 (67%)
Query: 396 QLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDI 455
+L C Y + + + ++I SGKF +L +L +L++ G RV+LFSQ T ++DI
Sbjct: 829 ELHVLCKQ-YRHINNFQL--DMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDI 885
Query: 456 LEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 515
LE+ LK + ++LRLDG T+ ER L+ +FN D F+FLLST+AGGLG+NL +A+ V
Sbjct: 886 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVV 944
Query: 516 IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGID 569
I+ D D NP D+QAEDR HR+GQ KEV V L+S G+IEE +L+ +QK+ ++
Sbjct: 945 ILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLE 998
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 552 (199.4 bits), Expect = 4.4e-87, Sum P(2) = 4.4e-87
Identities = 125/320 (39%), Positives = 184/320 (57%)
Query: 105 EQPTLL-QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
EQP++L Q L+ YQ GL W+ + + LNGILADEMGLGKTIQ IA +AYL + +G
Sbjct: 486 EQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EGN 544
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+IV P + + NW+ E + W P++ + Y G +ERK +R S+ +NV++T Y
Sbjct: 545 KGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTY 604
Query: 224 DLIMR---DRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSL 280
+ + DR ++++ Y I DEGH LKN + + RLLLTGTP+QN+L
Sbjct: 605 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNL 664
Query: 281 QELWSLLNFLLPTIFNS-VENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339
EL SLLNF++P +F+S F++ K + ++ ++E+ I +I+PFILR
Sbjct: 665 LELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILR 721
Query: 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRK 399
R K+EV K LP K I C MS Q+ Y + + + ++ KS + N+ MQLRK
Sbjct: 722 RVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINN-IEKSTEMCNVMMQLRK 780
Query: 400 CCNHPYLFVGEYNMWRKEEI 419
NHP L Y + +E+
Sbjct: 781 MANHPLLHRQYYTAEKLKEM 800
Score = 379 (138.5 bits), Expect = 4.4e-87, Sum P(2) = 4.4e-87
Identities = 80/174 (45%), Positives = 117/174 (67%)
Query: 396 QLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDI 455
+L C Y + + + ++I SGKF +L +L +L++ G RV+LFSQ T ++DI
Sbjct: 829 ELHVLCKQ-YRHINNFQL--DMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDI 885
Query: 456 LEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 515
LE+ LK + ++LRLDG T+ ER L+ +FN D F+FLLST+AGGLG+NL +A+ V
Sbjct: 886 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVV 944
Query: 516 IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGID 569
I+ D D NP D+QAEDR HR+GQ KEV V L+S G+IEE +L+ +QK+ ++
Sbjct: 945 ILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLE 998
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 548 (198.0 bits), Expect = 4.7e-87, Sum P(2) = 4.7e-87
Identities = 125/320 (39%), Positives = 185/320 (57%)
Query: 105 EQPTLL-QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
EQP+LL Q L+ YQ GL W+ + + LNGILADEMGLGKTIQ IA +AYL + +G
Sbjct: 481 EQPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQ-EGN 539
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+IV P + + NW+ E + W PS+ + Y G +ERK +R ++ +NV++T Y
Sbjct: 540 KGPHLIVVPASTIDNWLREVNLWCPSLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTY 599
Query: 224 DLIMR---DRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSL 280
+ + DR ++++ Y I DEGH LKN + + + RLLLTGTP+QN+L
Sbjct: 600 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNL 659
Query: 281 QELWSLLNFLLPTIFNS-VENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339
EL SLLNF++P +F+S F++ K + ++ ++E+ I +I+PFILR
Sbjct: 660 LELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKER---IAHAKQIIKPFILR 716
Query: 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRK 399
R K+EV K LP K I C MS Q+ Y + + + ++ K+ + N+ MQLRK
Sbjct: 717 RVKEEVLKLLPPKKDRIELCAMSEKQEQLYSGLFNRLKKSINN-LEKNTEMCNVMMQLRK 775
Query: 400 CCNHPYLFVGEYNMWRKEEI 419
NHP L Y + +E+
Sbjct: 776 MANHPLLHRQYYTPEKLKEM 795
Score = 385 (140.6 bits), Expect = 4.7e-87, Sum P(2) = 4.7e-87
Identities = 86/200 (43%), Positives = 124/200 (62%)
Query: 396 QLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDI 455
+L C Y + Y + ++I SGKF L +L +L++ G RV+LFSQ T ++DI
Sbjct: 824 ELHVLCKQ-YQHINSYQL--DMDLILDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDI 880
Query: 456 LEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 515
LE+ LK + ++LRLDG T+ ER L+ +FN D F+FLLST+AGGLG+NL +A+ V
Sbjct: 881 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVV 939
Query: 516 IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 575
I+ D D NP D+QAEDR HR+GQ KEV V L+S G+IEE +L+ +QK+ ++ +
Sbjct: 940 ILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTV 999
Query: 576 GLFNTTSTAQDRREMLKEIM 595
+ S D +LK M
Sbjct: 1000 DEADEGSMPADIATLLKTSM 1019
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 547 (197.6 bits), Expect = 6.7e-87, Sum P(2) = 6.7e-87
Identities = 124/320 (38%), Positives = 185/320 (57%)
Query: 105 EQPTLL-QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
EQP+LL Q L+ YQ GL W+ + + LNGILADEMGLGKTIQ IA +AYL + +G
Sbjct: 484 EQPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQ-EGN 542
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+IV P + + NW+ E + W P++ + Y G +ERK +R ++ +NV++T Y
Sbjct: 543 KGPHLIVVPASTIDNWLREVNLWCPTLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTY 602
Query: 224 DLIMR---DRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSL 280
+ + DR ++++ Y I DEGH LKN + + + RLLLTGTP+QN+L
Sbjct: 603 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNL 662
Query: 281 QELWSLLNFLLPTIFNS-VENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339
EL SLLNF++P +F+S F++ K + ++ ++E+ I +I+PFILR
Sbjct: 663 LELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKER---IAHAKQIIKPFILR 719
Query: 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRK 399
R K+EV K LP K I C MS Q+ Y + + + ++ K+ + N+ MQLRK
Sbjct: 720 RVKEEVLKLLPPKKDQIELCAMSEKQEQLYSGLFNRLKKSINN-LEKNTEMCNVMMQLRK 778
Query: 400 CCNHPYLFVGEYNMWRKEEI 419
NHP L Y + +E+
Sbjct: 779 MANHPLLHRQYYTAEKLKEM 798
Score = 385 (140.6 bits), Expect = 6.7e-87, Sum P(2) = 6.7e-87
Identities = 86/200 (43%), Positives = 124/200 (62%)
Query: 396 QLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDI 455
+L C Y + Y + ++I SGKF L +L +L++ G RV+LFSQ T ++DI
Sbjct: 827 ELHVLCKQ-YQHINSYQL--DMDLILDSGKFRTLGCILSELKQKGDRVVLFSQFTMMLDI 883
Query: 456 LEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 515
LE+ LK + ++LRLDG T+ ER L+ +FN D F+FLLST+AGGLG+NL +A+ V
Sbjct: 884 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVV 942
Query: 516 IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 575
I+ D D NP D+QAEDR HR+GQ KEV V L+S G+IEE +L+ +QK+ ++ +
Sbjct: 943 ILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTV 1002
Query: 576 GLFNTTSTAQDRREMLKEIM 595
+ S D +LK M
Sbjct: 1003 DEADEGSMPADIATLLKTSM 1022
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 549 (198.3 bits), Expect = 8.7e-87, Sum P(2) = 8.7e-87
Identities = 124/320 (38%), Positives = 184/320 (57%)
Query: 105 EQPTLL-QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
EQP++L Q L+ YQ GL W+ + + LNGILADEMGLGKTIQ IA +AYL + +G
Sbjct: 489 EQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EGN 547
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+IV P + + NW+ E + W P++ + Y G +ERK +R S+ +NV++T Y
Sbjct: 548 KGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTY 607
Query: 224 DLIMR---DRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSL 280
+ + DR ++++ Y I DEGH LKN + + RLLLTGTP+QN+L
Sbjct: 608 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNL 667
Query: 281 QELWSLLNFLLPTIFNS-VENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339
EL SLLNF++P +F+S F++ K + ++ ++E+ I +I+PFILR
Sbjct: 668 LELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILR 724
Query: 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRK 399
R K+EV K LP K I C MS Q+ Y + + + ++ K+ + N+ MQLRK
Sbjct: 725 RVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINN-MEKNTEMCNVMMQLRK 783
Query: 400 CCNHPYLFVGEYNMWRKEEI 419
NHP L Y + +E+
Sbjct: 784 MANHPLLHRQYYTAEKLKEM 803
Score = 381 (139.2 bits), Expect = 8.7e-87, Sum P(2) = 8.7e-87
Identities = 85/200 (42%), Positives = 125/200 (62%)
Query: 396 QLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDI 455
+L C Y + + + ++I SGKF +L +L +L++ G RV+LFSQ T ++DI
Sbjct: 832 ELHVLCKQ-YRHINNFQL--DMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDI 888
Query: 456 LEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 515
LE+ LK + ++LRLDG T+ ER L+ +FN D F+FLLST+AGGLG+NL +A+ V
Sbjct: 889 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVV 947
Query: 516 IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 575
I+ D D NP D+QAEDR HR+GQ KEV V L+S G+IEE +L+ +QK+ ++ +
Sbjct: 948 ILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTI 1007
Query: 576 GLFNTTSTAQDRREMLKEIM 595
+ S D +LK M
Sbjct: 1008 DEGDEGSMPADIATLLKTSM 1027
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 864 (309.2 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 199/514 (38%), Positives = 304/514 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I + Y + KG+ GP +++AP
Sbjct: 968 KLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPL 1026
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE-RGR-------FNVLITHY 223
+ +PNW EF TW + VVY G R+ ++ E +F + +GR F+ +IT +
Sbjct: 1027 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 1085
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L+ + W +++DE HRLKN C L + + ++ ++LLTGTP+QN+++EL
Sbjct: 1086 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1145
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRLHHVIRPFILRRKK 342
+SLL+FL P F S F + F K QV L + +++RRL + + +++
Sbjct: 1146 FSLLHFLEPGRFPSETTFMQEFG-DLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEE 1204
Query: 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+E L I K ++ + + + + G G +L N M+LRKCCN
Sbjct: 1205 TIIEVELTN----IQK---KYYRAILEKNFAFLSKGG---GQANVPNLLNTMMELRKCCN 1254
Query: 403 HPYLFVGE-----------YNM----WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFS 447
HPYL G +N ++ + +I+A+GK L+D+LLPKL+ GHRVL+FS
Sbjct: 1255 HPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFS 1314
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+
Sbjct: 1315 QMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGI 1374
Query: 508 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 567
NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+++ L++ S E + ++A K+G
Sbjct: 1375 NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLG 1434
Query: 568 IDAKVIQA--GLFNTTSTAQD-RREMLKEIMRRG 598
+D V+Q+ G N T+ Q ++ +++++R+G
Sbjct: 1435 LDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKG 1468
Score = 55 (24.4 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 626 FEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGK 680
F++ DE+ K R+ + E+ E+A S P++KEE ES+S G+
Sbjct: 1849 FDREDEDPEYKPT-RTPFKD--EIDEFANSPPEDKEESIEIHPNKHSESNSELGQ 1900
Score = 40 (19.1 bits), Expect = 3.8e-85, Sum P(2) = 3.8e-85
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 610 REINRLAARSDEE----FWLFEKMDEERRQKENYRSRLM 644
R + R+ + D+E + E + EER + YR L+
Sbjct: 2023 RRVCRMPVKPDDEPPDLSTMIEPITEERASRTLYRIELL 2061
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 871 (311.7 bits), Expect = 1.6e-86, Sum P(2) = 1.6e-86
Identities = 201/514 (39%), Positives = 304/514 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I + Y + KG+ GP +++AP
Sbjct: 957 KLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPL 1015
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE-RGR-------FNVLITHY 223
+ +PNW EF TW + VVY G R+ ++ E +F + +GR F+ +IT +
Sbjct: 1016 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 1074
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L+ + W +++DE HRLKN C L + + ++ ++LLTGTP+QN+++EL
Sbjct: 1075 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1134
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRLHHVIRPFILRRKK 342
+SLL+FL P+ F S F + F K QV L + +++RRL + + +++
Sbjct: 1135 FSLLHFLEPSRFPSETTFMQEFG-DLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEE 1193
Query: 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+E L I K ++ + + T + + G G +L N M+LRKCCN
Sbjct: 1194 TIIEVELTN----IQK---KYYRAILEKNFTFLSKGG---GQANVPNLLNTMMELRKCCN 1243
Query: 403 HPYLFVG-------EYNMWRKEE--------IIRASGKFELLDRLLPKLRKSGHRVLLFS 447
HPYL G E+ E +I+A+GK L+D+LLPKL+ GHRVL+FS
Sbjct: 1244 HPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFS 1303
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+
Sbjct: 1304 QMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI 1363
Query: 508 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 567
NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+++ L++ S E + ++A K+G
Sbjct: 1364 NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLG 1423
Query: 568 IDAKVIQA--GLFNTTSTAQD-RREMLKEIMRRG 598
+D V+Q+ G N T+ Q ++ +++++R+G
Sbjct: 1424 LDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKG 1457
Score = 46 (21.3 bits), Expect = 1.6e-86, Sum P(2) = 1.6e-86
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 626 FEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSS 676
F++ DE+ K R+ + E+ E+A S ++KEE H S+
Sbjct: 1838 FDREDEDPEYKPT-RAPFKD--EIDEFANSPAEDKEESMEVHSSGKHSESN 1885
Score = 41 (19.5 bits), Expect = 5.3e-86, Sum P(2) = 5.3e-86
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 610 REINRLAARSDEE----FWLFEKMDEERRQKENYRSRLM 644
R + R+ A+ ++E L E + EER + YR L+
Sbjct: 2013 RRVCRMPAKPEDEPPDLASLIEPITEERASRTLYRIELL 2051
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 858 (307.1 bits), Expect = 2.4e-86, Sum P(3) = 2.4e-86
Identities = 199/514 (38%), Positives = 304/514 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+IA + + N G+ GP +++AP
Sbjct: 427 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVY-NVGIHGPFLVIAPL 485
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE--RGR-------FNVLITHY 223
+ + NW EF+TW + +VY G R+ +++ E + + RGR F+ LIT +
Sbjct: 486 STITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTF 544
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L++++W +I+DE HRLKN C L ++ ++ ++LLTGTP+QN+++EL
Sbjct: 545 EMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEEL 604
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343
+SLL+FL P+ F S F KD G L EEQ+ ++ + + + R K+D
Sbjct: 605 FSLLHFLEPSQFPSESEF-------LKDFGD--LKTEEQVQKLQAILKPM--MLRRLKED 653
Query: 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+ P + +I + +K Y + + + G +L N M+LRKCCN
Sbjct: 654 VEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCN 713
Query: 403 HPYLFVG-------EYNM--------WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFS 447
HPYL G E+ + + ++R++GK L+D+LLPKL+ GH+VL+FS
Sbjct: 714 HPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFS 773
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+
Sbjct: 774 QMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI 833
Query: 508 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 567
NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S E + ++A K+G
Sbjct: 834 NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLG 893
Query: 568 IDAKVIQA--GLF-NTTSTAQDRREMLKEIMRRG 598
+D V+Q+ G N T Q ++ +++++R+G
Sbjct: 894 LDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKG 927
Score = 40 (19.1 bits), Expect = 2.4e-86, Sum P(3) = 2.4e-86
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 589 EMLKEIMRRGTSSLGTDVPSEREINRLAAR 618
E+L+ R G S ++ + + + LAAR
Sbjct: 1549 ELLRGAARHGVSQTDCNIMQDPDFSFLAAR 1578
Score = 40 (19.1 bits), Expect = 2.4e-86, Sum P(3) = 2.4e-86
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 644 MEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTL 692
MED +W +NK E G E + R K+ +A+T+
Sbjct: 1975 MEDRRKQKWQRCKKNNKAELNCL----GMEPAQTANSRNGKKGHHAETV 2019
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 871 (311.7 bits), Expect = 2.6e-86, Sum P(2) = 2.6e-86
Identities = 201/514 (39%), Positives = 304/514 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I + Y + KG+ GP +++AP
Sbjct: 967 KLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPL 1025
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE-RGR-------FNVLITHY 223
+ +PNW EF TW + VVY G R+ ++ E +F + +GR F+ +IT +
Sbjct: 1026 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 1084
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L+ + W +++DE HRLKN C L + + ++ ++LLTGTP+QN+++EL
Sbjct: 1085 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1144
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRLHHVIRPFILRRKK 342
+SLL+FL P+ F S F + F K QV L + +++RRL + + +++
Sbjct: 1145 FSLLHFLEPSRFPSETTFMQEFG-DLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEE 1203
Query: 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+E L I K ++ + + T + + G G +L N M+LRKCCN
Sbjct: 1204 TIIEVELTN----IQK---KYYRAILEKNFTFLSKGG---GQANVPNLLNTMMELRKCCN 1253
Query: 403 HPYLFVG-------EYNMWRKEE--------IIRASGKFELLDRLLPKLRKSGHRVLLFS 447
HPYL G E+ E +I+A+GK L+D+LLPKL+ GHRVL+FS
Sbjct: 1254 HPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFS 1313
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+
Sbjct: 1314 QMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI 1373
Query: 508 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 567
NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+++ L++ S E + ++A K+G
Sbjct: 1374 NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLG 1433
Query: 568 IDAKVIQA--GLFNTTSTAQD-RREMLKEIMRRG 598
+D V+Q+ G N T+ Q ++ +++++R+G
Sbjct: 1434 LDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKG 1467
Score = 44 (20.5 bits), Expect = 2.6e-86, Sum P(2) = 2.6e-86
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 626 FEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSS 676
F++ DE+ K R+ + E+ E+A S ++KEE H S+
Sbjct: 1848 FDREDEDPEYKPT-RTPFKD--EIDEFANSPSEDKEESMEIHATGKHSESN 1895
Score = 39 (18.8 bits), Expect = 8.7e-86, Sum P(2) = 8.7e-86
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 610 REINRLAARSDEE----FWLFEKMDEERRQKENYRSRLM 644
R + R+ + D+E + E + EER + YR L+
Sbjct: 2023 RRVCRMPVKPDDEPPDLSSIIEPITEERASRTLYRIELL 2061
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 545 (196.9 bits), Expect = 2.9e-86, Sum P(2) = 2.9e-86
Identities = 124/320 (38%), Positives = 183/320 (57%)
Query: 105 EQPTLL-QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
EQP++L Q L+ YQ GL W+ + + LNGILADEMGLGKTIQ IA +AYL + +G
Sbjct: 486 EQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EGN 544
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+IV P + + NW+ E + W P++ + Y G +ERK +R S +NV++T Y
Sbjct: 545 NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTY 604
Query: 224 DLIMR---DRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSL 280
+ + DR ++++ Y I DEGH LKN + + RLLLTGTP+QN+L
Sbjct: 605 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNL 664
Query: 281 QELWSLLNFLLPTIFNS-VENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339
EL SLLNF++P +F+S F++ K + ++ ++E+ I +I+PFILR
Sbjct: 665 LELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILR 721
Query: 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRK 399
R K+EV K LP K I C MS Q+ Y + + + ++ K+ + N+ MQLRK
Sbjct: 722 RVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINN-LEKNTEMCNVMMQLRK 780
Query: 400 CCNHPYLFVGEYNMWRKEEI 419
NHP L Y + +E+
Sbjct: 781 MANHPLLHRQYYTAEKLKEM 800
Score = 382 (139.5 bits), Expect = 2.9e-86, Sum P(2) = 2.9e-86
Identities = 85/200 (42%), Positives = 125/200 (62%)
Query: 396 QLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDI 455
+L C Y + + + ++I SGKF +L +L +L++ G RV+LFSQ T ++DI
Sbjct: 829 ELHVLCKQ-YRHINNFQL--DMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDI 885
Query: 456 LEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 515
LE+ LK + ++LRLDG T+ ER L+ +FN D F+FLLST+AGGLG+NL +A+ V
Sbjct: 886 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVV 944
Query: 516 IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 575
I+ D D NP D+QAEDR HR+GQ KEV V L+S G+IEE +L+ +QK+ ++ +
Sbjct: 945 ILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTV 1004
Query: 576 GLFNTTSTAQDRREMLKEIM 595
+ S D +LK M
Sbjct: 1005 DEGDEGSMPADIATLLKTSM 1024
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 860 (307.8 bits), Expect = 3.7e-86, Sum P(3) = 3.7e-86
Identities = 199/528 (37%), Positives = 307/528 (58%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171
G +LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I + + N G+ GP +++A
Sbjct: 752 GNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSITFLQEVY-NVGIRGPFLVIA 810
Query: 172 PKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE--RGR-------FNVLIT 221
P + + NW EF +W + +VY G R+ +++ E + + +GR F+ LIT
Sbjct: 811 PLSTITNWEREFGSWT-QMNTIVYHGSLASRQMIQQYEMYCKDSKGRLIPGAYKFDALIT 869
Query: 222 HYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQ 281
+++++ D L++++W +I+DE HRLKN C L ++ ++ ++LLTGTP+QN+++
Sbjct: 870 TFEMVLSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVE 929
Query: 282 ELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 341
EL+SLL+FL PT F+S F KD G L EEQ+ ++ + + + R K
Sbjct: 930 ELFSLLHFLEPTQFSSEAEF-------LKDFGD--LKTEEQVQKLQAILKPM--MLRRLK 978
Query: 342 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGKSKSLQNLSMQLRKC 400
+D + P + +I + +K Y + + + + +L N M+LRKC
Sbjct: 979 EDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGASQSNTPNLLNTMMELRKC 1038
Query: 401 CNHPYLFVG-------EYNM--------WRKEEIIRASGKFELLDRLLPKLRKSGHRVLL 445
CNHPYL G E+ + + ++R+SGK L+D+LLPKLR GH+VL+
Sbjct: 1039 CNHPYLITGAEEKIISEFREATPVVPPDFHVQAMVRSSGKLVLIDKLLPKLRAGGHKVLI 1098
Query: 446 FSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL 505
FSQM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGL
Sbjct: 1099 FSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRPDSDRFVFLLCTRAGGL 1158
Query: 506 GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 565
G+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+++ L++ S E + ++A K
Sbjct: 1159 GINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLITRNSYEREMFDKASLK 1218
Query: 566 MGIDAKVIQA--GLFNTTS--TAQDRREMLKEIMRRGTSSLGTDVPSE 609
+G+D V+Q+ G N S Q ++ +++++R+G + D E
Sbjct: 1219 LGLDKAVLQSMSGRDNHLSGPIQQFTKKEIEDLLRKGAYAAIMDEDDE 1266
Score = 43 (20.2 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 634 RQKENYRSRLMEDHEVPEWAYSA-PDNKEEQKGFEKGFGHESSSI 677
R+ + +S+ D +W + PD + +G++K H+ + +
Sbjct: 1477 RKGKKVKSQSSFDIHKADWIHKYNPDTLFQDEGYKKHLKHQCNKV 1521
Score = 40 (19.1 bits), Expect = 3.1e-85, Sum P(2) = 3.1e-85
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 646 DHEVPEWAYSAPDNKEEQKGFEKGFGHESSSIT 678
D E+PEW S + E +G + +G + +T
Sbjct: 1855 DPELPEWWESGRHDNELLQGAAR-YGLSRTDLT 1886
Score = 39 (18.8 bits), Expect = 3.7e-86, Sum P(3) = 3.7e-86
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 596 RRGTSSLGTDVPSEREINRLAARS 619
R T + VP+ER+ + LA+ S
Sbjct: 1913 RPSTPTTAPSVPTERQPSHLASLS 1936
Score = 37 (18.1 bits), Expect = 3.7e-86, Sum P(3) = 3.7e-86
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 648 EVPEWAYSAPD 658
++PEW + PD
Sbjct: 2149 QLPEWLHRNPD 2159
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 863 (308.9 bits), Expect = 4.0e-86, Sum P(2) = 4.0e-86
Identities = 199/514 (38%), Positives = 304/514 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I + Y + KG+ GP +++AP
Sbjct: 917 KLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPL 975
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE-RGR-------FNVLITHY 223
+ +PNW EF TW + VVY G R+ ++ E +F + +GR F+ +IT +
Sbjct: 976 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 1034
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L+ + W +++DE HRLKN C L + + ++ ++LLTGTP+QN+++EL
Sbjct: 1035 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1094
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRLHHVIRPFILRRKK 342
+SLL+FL PT F S F + F K QV L + +++RRL + + +++
Sbjct: 1095 FSLLHFLEPTRFPSETTFMQEFG-DLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEE 1153
Query: 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+E L I K ++ + + + + G G +L N M+LRKCCN
Sbjct: 1154 TIIEVELTN----IQK---KYYRAILEKNFAFLSKGG---GQANVPNLLNTMMELRKCCN 1203
Query: 403 HPYLFVGE-----------YNM----WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFS 447
HPYL G +N ++ + +I+A+GK L+D+LLPKL+ GHRVL+FS
Sbjct: 1204 HPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFS 1263
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+
Sbjct: 1264 QMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI 1323
Query: 508 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 567
NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+++ L++ S E + ++A K+G
Sbjct: 1324 NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLG 1383
Query: 568 IDAKVIQA--GLFNTTSTAQD-RREMLKEIMRRG 598
+D V+Q+ G N + Q ++ +++++R+G
Sbjct: 1384 LDKAVLQSMSGRENAPNGVQQLSKKEIEDLLRKG 1417
Score = 50 (22.7 bits), Expect = 4.0e-86, Sum P(2) = 4.0e-86
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 626 FEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEE 662
F++ DE+ K R+ + E+ E+A S P++KEE
Sbjct: 1798 FDREDEDPEYKPT-RTPFKD--EIDEFANSPPEDKEE 1831
>UNIPROTKB|E1BDZ3 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:DAAA02046444
IPI:IPI00705152 Ensembl:ENSBTAT00000002955 Uniprot:E1BDZ3
Length = 2900
Score = 856 (306.4 bits), Expect = 4.2e-86, Sum P(3) = 4.2e-86
Identities = 212/557 (38%), Positives = 316/557 (56%)
Query: 98 SIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYL 157
+I +K+ + G +LR YQLEGL W+L + N N ILADEMGLGKTIQ+I + +
Sbjct: 844 NIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI 903
Query: 158 LENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE--- 212
L G+ GP +I+AP + + NW EF TW I VVY G R+ ++ E +F +
Sbjct: 904 LLT-GIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQG 961
Query: 213 ---RG--RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR 267
RG RF +IT +++I+ L ++W +I+DE HRLKN C L + + ++
Sbjct: 962 RIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEH 1021
Query: 268 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIR 327
++LLTGTP+QN+++EL+SLL+FL P F S E F F D L EEQ+ ++
Sbjct: 1022 KVLLTGTPLQNTVEELFSLLHFLEPLRFPS----ESTFMQEFGD-----LKTEEQVQKLQ 1072
Query: 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGK 386
+ + + R K+D +K P + +I + +K Y + + + G
Sbjct: 1073 AILKPM--MLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTN 1130
Query: 387 SKSLQNLSMQLRKCCNHPYLF-------VGE----YNM----WRKEEIIRASGKFELLDR 431
+L N M+LRKCCNHPYL +GE YN + + +I+++GK L+D+
Sbjct: 1131 VPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDK 1190
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
LLPK++ GH+VL+FSQM R +DILE YL + + R+DG + R + +F+ PDS
Sbjct: 1191 LLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDS 1250
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
F+FLL TRAGGLG+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ LV+
Sbjct: 1251 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTR 1310
Query: 552 GSIEEVILERAKQKMGIDAKVIQA--GL-FNTTSTAQDRREMLKEIMRRGTSSLGTDVPS 608
S E + +RA K+G+D V+Q+ G N Q ++ +++++RRG + G +
Sbjct: 1311 NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRG--AYGAIMEE 1368
Query: 609 EREINRLAARSDEEFWL 625
E E ++ ++ L
Sbjct: 1369 EDEGSKFCEEDIDQILL 1385
Score = 48 (22.0 bits), Expect = 4.2e-86, Sum P(3) = 4.2e-86
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 660 KEEQKGFEKGFGHESSSITGKRKRKE 685
K + G E+ G++S + GK++R E
Sbjct: 2736 KPTESGTEEKKGNDSKEVEGKKERTE 2761
Score = 42 (19.8 bits), Expect = 1.5e-84, Sum P(2) = 1.5e-84
Identities = 20/90 (22%), Positives = 37/90 (41%)
Query: 705 QDISKLSTRGKRREYLPSEGNESASNSTGAEKKN--LDMKNEIFPLASEGTSEDTFGSAP 762
+D+ K+ + + E SE +S T K+ + KN + P A+ G
Sbjct: 2044 EDV-KVKSENLKEEPQSSEEESMSSEETRTLIKSEPVSPKNGVLPQATGDQKSGGKGETD 2102
Query: 763 KRLRFERRNSESSDIQSVEKSEHK-GVQGS 791
+R+ R + + S ++ HK G + S
Sbjct: 2103 RRMVAARTEPLTPNPASKKQRVHKRGSESS 2132
Score = 40 (19.1 bits), Expect = 2.4e-84, Sum P(2) = 2.4e-84
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 722 SEGNESASNSTGAEKKNLDMKNEIFPLASEGT 753
S + S+S+S+ + + D + E +EGT
Sbjct: 2181 SSSSSSSSSSSSSSSEESDSEEEEVQKRAEGT 2212
Score = 38 (18.4 bits), Expect = 4.2e-86, Sum P(3) = 4.2e-86
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 693 SDLQWMKAVENGQDISKLSTRGKRREYLPS--------EGNESA-----SNSTGAEKKNL 739
SDL K+VE ++ S++ + + PS EG+E A S+ST + ++
Sbjct: 2835 SDLGSSKSVEVKEEDSRVRDQEDKGGTEPSPLHENSTDEGSEKADASSGSDSTSSSSEDS 2894
Query: 740 DMKNE 744
D NE
Sbjct: 2895 DSSNE 2899
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
Identities = 199/514 (38%), Positives = 304/514 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+IA + + N G+ GP +++AP
Sbjct: 36 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVY-NVGIHGPFLVIAPL 94
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE--RGR-------FNVLITHY 223
+ + NW EF+TW + +VY G R+ +++ E + + RGR F+ LIT +
Sbjct: 95 STITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTF 153
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L++++W +I+DE HRLKN C L ++ ++ ++LLTGTP+QN+++EL
Sbjct: 154 EMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEEL 213
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343
+SLL+FL P+ F S F KD G L EEQ+ ++ + + + R K+D
Sbjct: 214 FSLLHFLEPSQFPSESEF-------LKDFGD--LKTEEQVQKLQAILKPM--MLRRLKED 262
Query: 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+ P + +I + +K Y + + + G +L N M+LRKCCN
Sbjct: 263 VEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCN 322
Query: 403 HPYLFVG-------EYNM--------WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFS 447
HPYL G E+ + + ++R++GK L+D+LLPKL+ GH+VL+FS
Sbjct: 323 HPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFS 382
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+
Sbjct: 383 QMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI 442
Query: 508 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 567
NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S E + ++A K+G
Sbjct: 443 NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLG 502
Query: 568 IDAKVIQA--GLF-NTTSTAQDRREMLKEIMRRG 598
+D V+Q+ G N T Q ++ +++++R+G
Sbjct: 503 LDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKG 536
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 212/557 (38%), Positives = 316/557 (56%)
Query: 98 SIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYL 157
+I +K+ + G +LR YQLEGL W+L + N N ILADEMGLGKTIQ+I + +
Sbjct: 369 NIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI 428
Query: 158 LENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE--- 212
L G+ GP +I+AP + + NW EF TW I VVY G R+ ++ E +F +
Sbjct: 429 LLT-GIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQG 486
Query: 213 ---RG--RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR 267
RG RF +IT +++I+ L ++W +I+DE HRLKN C L + + ++
Sbjct: 487 RIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEH 546
Query: 268 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIR 327
++LLTGTP+QN+++EL+SLL+FL P F S E F F D L EEQ+ ++
Sbjct: 547 KVLLTGTPLQNTVEELFSLLHFLEPLRFPS----ESTFMQEFGD-----LKTEEQVQKLQ 597
Query: 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGK 386
+ + + R K+D +K P + +I + +K Y + + + G
Sbjct: 598 AILKPM--MLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTN 655
Query: 387 SKSLQNLSMQLRKCCNHPYLF-------VGE----YNM----WRKEEIIRASGKFELLDR 431
+L N M+LRKCCNHPYL +GE YN + + +I+++GK L+D+
Sbjct: 656 VPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDK 715
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
LLPK++ GH+VL+FSQM R +DILE YL + + R+DG + R + +F+ PDS
Sbjct: 716 LLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDS 775
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
F+FLL TRAGGLG+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ LV+
Sbjct: 776 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTR 835
Query: 552 GSIEEVILERAKQKMGIDAKVIQA--GL-FNTTSTAQDRREMLKEIMRRGTSSLGTDVPS 608
S E + +RA K+G+D V+Q+ G N Q ++ +++++RRG + G +
Sbjct: 836 NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRG--AYGAIMEE 893
Query: 609 EREINRLAARSDEEFWL 625
E E ++ ++ L
Sbjct: 894 EDEGSKFCEEDIDQILL 910
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 866 (309.9 bits), Expect = 1.6e-85, Sum P(2) = 1.6e-85
Identities = 200/525 (38%), Positives = 310/525 (59%)
Query: 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
+K+ E G +LR YQLEG+ W+L + N N ILADEMGLGKTIQ+IAL++ + +
Sbjct: 833 KKLDESTEYKNGNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALLSEMF-S 891
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFF--SERG--- 214
GV P +I+AP + + NW EFS W + A+VY G R+ +++ E + ++G
Sbjct: 892 AGVQSPFMIIAPLSTITNWEREFSNWT-DMNAIVYHGSLASRQMIQQYEMYCKDDKGHLI 950
Query: 215 ----RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLL 270
+F+ LIT +++I+ D L+++ W +++DE HRLKN C L ++ +I+ ++L
Sbjct: 951 PGAYKFDALITTFEMILSDCPELREISWRCVVIDEAHRLKNRNCKLLDSLKMLEIEHKVL 1010
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRL 329
LTGTP+QN+++EL+SLL+FL P F S F F K QV L + +++RRL
Sbjct: 1011 LTGTPLQNTVEELFSLLHFLEPAQFPSEIEFLREFG-DLKTEEQVQKLQSILKPMMLRRL 1069
Query: 330 HHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKS 389
+ + +++ +E L + V K + ++ + +G T +
Sbjct: 1070 KEDVEKNLAPKQETIIEVEL---TDVQKKYYRAILERNF--SFLSMGA----TQNSNVPN 1120
Query: 390 LQNLSMQLRKCCNHPYLFVGE-----------YNM----WRKEEIIRASGKFELLDRLLP 434
L N M+LRKCCNHPYL G Y+ + + ++R++GK LLD+LLP
Sbjct: 1121 LLNTMMELRKCCNHPYLITGAEEKIVSELREVYDPLAPDFHLQALVRSAGKLVLLDKLLP 1180
Query: 435 KLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494
+L+ GH+VL+FSQM R +DILE YL + + R+DG + R + +F+ PDS F
Sbjct: 1181 RLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1240
Query: 495 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554
+FLL TRAGGLG+NL ADT +IFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S
Sbjct: 1241 VFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 1300
Query: 555 EEVILERAKQKMGIDAKVIQAGLFNTTSTAQD-RREMLKEIMRRG 598
E +L++A K+G+D V+Q+ N S+ Q ++ +++++R+G
Sbjct: 1301 EREMLDKASLKLGLDRAVLQSMSGNKESSIQQFSKKEIEDLLRKG 1345
Score = 39 (18.8 bits), Expect = 1.6e-85, Sum P(2) = 1.6e-85
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 697 WMKAVENGQDISKLSTRGKRREYLPSEGNESASNST 732
W K+ NG KL G S+ + +S+S+
Sbjct: 2083 WKKSKNNGPSERKLGGGGGGASDSDSDSDSGSSSSS 2118
>UNIPROTKB|Q3L8U1 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_111217 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0044281
GO:GO:0003677 GO:GO:0044255 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:AY243500 EMBL:DQ333316
EMBL:AY647157 EMBL:AC007906 EMBL:AC079416 EMBL:BC140815
EMBL:AB002306 EMBL:AF150735 EMBL:AK022582 IPI:IPI00383105
IPI:IPI00746795 IPI:IPI00914955 RefSeq:NP_079410.4 UniGene:Hs.59159
UniGene:Hs.622347 ProteinModelPortal:Q3L8U1 SMR:Q3L8U1
IntAct:Q3L8U1 STRING:Q3L8U1 PhosphoSite:Q3L8U1 DMDM:215273951
PaxDb:Q3L8U1 PRIDE:Q3L8U1 Ensembl:ENST00000398510
Ensembl:ENST00000447540 Ensembl:ENST00000564845
Ensembl:ENST00000566029 GeneID:80205 KEGG:hsa:80205 UCSC:uc002egy.3
UCSC:uc002ehb.3 UCSC:uc002ehc.3 CTD:80205 GeneCards:GC16P053041
HGNC:HGNC:25701 neXtProt:NX_Q3L8U1 PharmGKB:PA128394727
InParanoid:Q3L8U1 KO:K14438 OMA:MWGHQTA GenomeRNAi:80205
NextBio:70576 ArrayExpress:Q3L8U1 Bgee:Q3L8U1 CleanEx:HS_CHD9
Genevestigator:Q3L8U1 GermOnline:ENSG00000177200 Uniprot:Q3L8U1
Length = 2897
Score = 856 (306.4 bits), Expect = 2.1e-85, Sum P(2) = 2.1e-85
Identities = 212/557 (38%), Positives = 316/557 (56%)
Query: 98 SIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYL 157
+I +K+ + G +LR YQLEGL W+L + N N ILADEMGLGKTIQ+I + +
Sbjct: 843 NIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI 902
Query: 158 LENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE--- 212
L G+ GP +I+AP + + NW EF TW I VVY G R+ ++ E +F +
Sbjct: 903 LLT-GIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQG 960
Query: 213 ---RG--RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR 267
RG RF +IT +++I+ L ++W +I+DE HRLKN C L + + ++
Sbjct: 961 RIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEH 1020
Query: 268 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIR 327
++LLTGTP+QN+++EL+SLL+FL P F S E F F D L EEQ+ ++
Sbjct: 1021 KVLLTGTPLQNTVEELFSLLHFLEPLRFPS----ESTFMQEFGD-----LKTEEQVQKLQ 1071
Query: 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGK 386
+ + + R K+D +K P + +I + +K Y + + + G
Sbjct: 1072 AILKPM--MLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTN 1129
Query: 387 SKSLQNLSMQLRKCCNHPYLF-------VGE----YNM----WRKEEIIRASGKFELLDR 431
+L N M+LRKCCNHPYL +GE YN + + +I+++GK L+D+
Sbjct: 1130 VPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDK 1189
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
LLPK++ GH+VL+FSQM R +DILE YL + + R+DG + R + +F+ PDS
Sbjct: 1190 LLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDS 1249
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
F+FLL TRAGGLG+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ LV+
Sbjct: 1250 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTR 1309
Query: 552 GSIEEVILERAKQKMGIDAKVIQA--GL-FNTTSTAQDRREMLKEIMRRGTSSLGTDVPS 608
S E + +RA K+G+D V+Q+ G N Q ++ +++++RRG + G +
Sbjct: 1310 NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRG--AYGAIMEE 1367
Query: 609 EREINRLAARSDEEFWL 625
E E ++ ++ L
Sbjct: 1368 EDEGSKFCEEDIDQILL 1384
Score = 50 (22.7 bits), Expect = 2.1e-85, Sum P(2) = 2.1e-85
Identities = 18/68 (26%), Positives = 37/68 (54%)
Query: 693 SDLQWMKAVENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEG 752
SDL K+VE ++ S++ + + PS NE++++ G+EK + ++ ++
Sbjct: 2832 SDLGSSKSVEVKEEDSRIKDQEDKGGTEPSPLNENSTDE-GSEKADASSGSD----STSS 2886
Query: 753 TSEDTFGS 760
+SED+ S
Sbjct: 2887 SSEDSDSS 2894
Score = 45 (20.9 bits), Expect = 7.1e-85, Sum P(2) = 7.1e-85
Identities = 19/71 (26%), Positives = 31/71 (43%)
Query: 705 QDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKR 764
+ +S + TR + S N +TG +K + + +A+ T T A K+
Sbjct: 2062 ESMSSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKCETDRRMVAAR-TEPLTPNPASKK 2120
Query: 765 LRFERRNSESS 775
R +R SESS
Sbjct: 2121 PRVHKRGSESS 2131
>UNIPROTKB|E1BS48 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AADN02038292
EMBL:AADN02038293 EMBL:AADN02038294 EMBL:AADN02038295
EMBL:AADN02038296 EMBL:AADN02038297 EMBL:AADN02038298
IPI:IPI00579055 Ensembl:ENSGALT00000005902 Uniprot:E1BS48
Length = 2614
Score = 850 (304.3 bits), Expect = 2.2e-85, Sum P(3) = 2.2e-85
Identities = 204/528 (38%), Positives = 306/528 (57%)
Query: 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
+K+ G +LR YQLEGL W+L + N N ILADEMGLGKTIQ+I + +L +
Sbjct: 843 KKIEHSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLS 902
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE------ 212
G+ GP +I+AP + + NW EF TW + VVY G R+ ++ E +F +
Sbjct: 903 -GIRGPFLIIAPLSTITNWEREFRTWT-DLNVVVYHGSMISRQMIQQYEMYFRDSQGRIV 960
Query: 213 RG--RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLL 270
RG RF +IT +++I+ L ++W +I+DE HRLKN C L + + ++ ++L
Sbjct: 961 RGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNRNCKLLEGLKLMNLEHKVL 1020
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLH 330
LTGTP+QN+++EL+SLL+FL P F + E F F D L EEQ+ ++ +
Sbjct: 1021 LTGTPLQNTVEELFSLLHFLEPLRFPA----ESTFMQEFGD-----LKTEEQVQKLQAIL 1071
Query: 331 HVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGKSKS 389
+ + R K+D +K P + +I + +K Y + + + G +
Sbjct: 1072 KPM--MLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPN 1129
Query: 390 LQNLSMQLRKCCNHPYLF-------VGE----YNM----WRKEEIIRASGKFELLDRLLP 434
L N M+LRKCCNHPYL +GE YN + + +I+++GK L+D+LLP
Sbjct: 1130 LVNTMMELRKCCNHPYLIKGAEEKILGEFKETYNPTAPDFHLQAMIQSAGKLVLIDKLLP 1189
Query: 435 KLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494
K++ GH+VL+FSQM R +DILE YL + + R+DG + R + +F+ PDS F
Sbjct: 1190 KMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1249
Query: 495 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMD-QQAEDRAHRIGQKKEVRVFVLVSVGS 553
+FLL TRAGGLG+NL ADT IIFDSDWNPQ D Q+A+ R HRIGQ K V+V+ L++ S
Sbjct: 1250 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQKAQARCHRIGQNKAVKVYRLITRNS 1309
Query: 554 IEEVILERAKQKMGIDAKVIQA--GLFNTTSTAQD-RREMLKEIMRRG 598
E + +RA K+G+D V+Q+ G N+ Q ++ +++++RRG
Sbjct: 1310 YEREMFDRASLKLGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRG 1357
Score = 43 (20.2 bits), Expect = 2.2e-85, Sum P(3) = 2.2e-85
Identities = 19/90 (21%), Positives = 34/90 (37%)
Query: 702 ENGQDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSA 761
+ G D S S R S + S+S+S+ + + + + S + S+
Sbjct: 2122 KRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSS 2181
Query: 762 PKRLRFERRNSESSDIQSVEKSEHKGVQGS 791
+SE SD S E+ K +G+
Sbjct: 2182 SSSSSSSSSSSEESD--SDEEEAQKRAEGT 2209
Score = 43 (20.2 bits), Expect = 3.5e-84, Sum P(2) = 3.5e-84
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 550 SVGSIEEVILERAKQ----KMGIDAKVIQAGL---FNTTSTAQ--DRREMLKEI-MRRGT 599
+V ++ + + R KQ GI++ + AG+ N T + D + I ++ GT
Sbjct: 2437 NVEGVDVLFINRNKQPNHVNPGINSCQVAAGISPALNYTQSQGMLDAESPVPVINLKDGT 2496
Query: 600 SSLGTDVPSEREINR 614
G D P +++ R
Sbjct: 2497 RLAGDDAPKRKDLER 2511
Score = 40 (19.1 bits), Expect = 2.2e-85, Sum P(3) = 2.2e-85
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 598 GTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYR 640
G +SL D P R+ R + + +E +++ E +K R
Sbjct: 1437 GRNSLVIDTPRIRKQTRPFSATKDELAELSEVESEGEEKPKLR 1479
Score = 40 (19.1 bits), Expect = 4.6e-85, Sum P(3) = 4.6e-85
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 763 KRLRFERRNSESSDIQSVEKSEHKGVQGSGLN 794
K+ R R+N E D+ + +++ G+N
Sbjct: 2429 KKRRGRRKNVEGVDVLFINRNKQPNHVNPGIN 2460
>UNIPROTKB|E2RDK8 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AAEX03001603
EMBL:AAEX03001604 EMBL:AAEX03001605 Ensembl:ENSCAFT00000015413
Uniprot:E2RDK8
Length = 2902
Score = 856 (306.4 bits), Expect = 4.4e-85, Sum P(2) = 4.4e-85
Identities = 212/557 (38%), Positives = 316/557 (56%)
Query: 98 SIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYL 157
+I +K+ + G +LR YQLEGL W+L + N N ILADEMGLGKTIQ+I + +
Sbjct: 845 NIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI 904
Query: 158 LENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE--- 212
L G+ GP +I+AP + + NW EF TW I VVY G R+ ++ E +F +
Sbjct: 905 LLT-GIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQG 962
Query: 213 ---RG--RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR 267
RG RF +IT +++I+ L ++W +I+DE HRLKN C L + + ++
Sbjct: 963 RIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEH 1022
Query: 268 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIR 327
++LLTGTP+QN+++EL+SLL+FL P F S E F F D L EEQ+ ++
Sbjct: 1023 KVLLTGTPLQNTVEELFSLLHFLEPLRFPS----ESTFMQEFGD-----LKTEEQVQKLQ 1073
Query: 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGK 386
+ + + R K+D +K P + +I + +K Y + + + G
Sbjct: 1074 AILKPM--MLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTN 1131
Query: 387 SKSLQNLSMQLRKCCNHPYLF-------VGE----YNM----WRKEEIIRASGKFELLDR 431
+L N M+LRKCCNHPYL +GE YN + + +I+++GK L+D+
Sbjct: 1132 VPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDK 1191
Query: 432 LLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491
LLPK++ GH+VL+FSQM R +DILE YL + + R+DG + R + +F+ PDS
Sbjct: 1192 LLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDS 1251
Query: 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551
F+FLL TRAGGLG+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ LV+
Sbjct: 1252 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTR 1311
Query: 552 GSIEEVILERAKQKMGIDAKVIQA--GL-FNTTSTAQDRREMLKEIMRRGTSSLGTDVPS 608
S E + +RA K+G+D V+Q+ G N Q ++ +++++RRG + G +
Sbjct: 1312 NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRG--AYGAIMEE 1369
Query: 609 EREINRLAARSDEEFWL 625
E E ++ ++ L
Sbjct: 1370 EDEGSKFCEEDIDQILL 1386
Score = 47 (21.6 bits), Expect = 4.4e-85, Sum P(2) = 4.4e-85
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 660 KEEQKGFEKGFGHESSSITGKRKRKE 685
K + G E+ G++S + GK++R E
Sbjct: 2737 KPTESGTEEKKGNDSKELEGKKERTE 2762
Score = 42 (19.8 bits), Expect = 1.5e-84, Sum P(2) = 1.5e-84
Identities = 22/80 (27%), Positives = 34/80 (42%)
Query: 705 QDISKLSTRGKRREYLPSEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGSAPKR 764
+ +S TR + S N +TG +K + + +A+ T T A K+
Sbjct: 2064 ESMSSEETRTLIKSEPVSPKNGVLPQATGDQKSGGKGETDRRMVAAR-TEPLTPNPASKK 2122
Query: 765 LRFERRNSESSDIQSVEKSE 784
R +R SESS +S SE
Sbjct: 2123 QRVHKRGSESSS-ESDSDSE 2141
Score = 40 (19.1 bits), Expect = 2.4e-84, Sum P(2) = 2.4e-84
Identities = 19/86 (22%), Positives = 34/86 (39%)
Query: 709 KLSTRGKRREYLPSEGNESASNSTGAEKKN--LDMKNEIFPLASEGTSEDTFGSAPKRLR 766
K+ + + E SE +S T K+ + KN + P A+ G +R+
Sbjct: 2048 KVKSENLKEEPQSSEEESMSSEETRTLIKSEPVSPKNGVLPQATGDQKSGGKGETDRRMV 2107
Query: 767 FERRNSESSDIQSVEKSEHK-GVQGS 791
R + + S ++ HK G + S
Sbjct: 2108 AARTEPLTPNPASKKQRVHKRGSESS 2133
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 551 (199.0 bits), Expect = 4.6e-85, Sum P(2) = 4.6e-85
Identities = 123/307 (40%), Positives = 179/307 (58%)
Query: 105 EQPTLLQGG-ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV 163
+QP +L +L+AYQL GL+W++ L + L+GILADEMGLGKTIQ IA +A+L E KG+
Sbjct: 437 KQPKVLNSNLKLQAYQLIGLKWLILLHQHKLSGILADEMGLGKTIQAIAFLAHLYE-KGI 495
Query: 164 TGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY 223
GPH+I P + L NW+ E W PS+ ++Y G ++RK +R++ + FN++++ Y
Sbjct: 496 KGPHLITVPSSTLDNWVRELGLWCPSLKVLIYYGSVEDRKYLRQDILTGLIDFNIIVSTY 555
Query: 224 DLIM---RDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSL 280
+L + DR +K++ Y + DEGH LKN + + + RLLLTGTP+QN+L
Sbjct: 556 NLTIGNDHDRSLFRKLKLKYAVFDEGHMLKNMNSLRYRHLMTINAEHRLLLTGTPLQNNL 615
Query: 281 QELWSLLNFLLPTIFNS-VENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339
EL SLLNF++P++F+S + F+ + D I + +++PFILR
Sbjct: 616 LELMSLLNFIMPSMFSSSTSQISKMFSTRSSEEESSFHKDR-----IAQARLIMKPFILR 670
Query: 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRK 399
R K EV K LP K + I C MS Q Y + R+ T G + L N+ MQLRK
Sbjct: 671 RVKSEVLKELPPKMEKIEMCPMSDAQHKLYDILFK--RLK-KTPNGDKRELCNVMMQLRK 727
Query: 400 CCNHPYL 406
NHP L
Sbjct: 728 MANHPLL 734
Score = 360 (131.8 bits), Expect = 4.6e-85, Sum P(2) = 4.6e-85
Identities = 78/174 (44%), Positives = 116/174 (66%)
Query: 396 QLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDI 455
+L C Y + + + ++ +I SGKF LL + L KL++ G RV+LFSQ T ++DI
Sbjct: 776 ELHNLCRE-YSSISGFQL--EKALILDSGKFALLTKTLAKLKEKGDRVVLFSQFTMMLDI 832
Query: 456 LEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 515
+EI LK D +++RLDGST ER L+ ++N + F+FLLSTRAGG G+NL +A+TV
Sbjct: 833 VEILLKHLDHQYVRLDGSTPMAERIGLIDKYNT-NPEIFVFLLSTRAGGQGINLASANTV 891
Query: 516 IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGID 569
I+ D D NP D+QAEDR HR+GQ + V+V L+S SIE+ +L ++K+ ++
Sbjct: 892 ILHDIDCNPFNDKQAEDRCHRMGQTRTVQVIKLISKDSIEDCMLRVGQEKLKLE 945
Score = 43 (20.2 bits), Expect = 9.9e-29, Sum P(2) = 9.9e-29
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 203 KAMREEFFSERGRFNVLITHYDLIMRDRQ 231
K ++E+FF + G L+ +++++RQ
Sbjct: 377 KDVKEQFFKDNGLSIDLVHGCKVVLKERQ 405
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 849 (303.9 bits), Expect = 6.2e-85, Sum P(2) = 6.2e-85
Identities = 198/516 (38%), Positives = 305/516 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I + Y + KG+ GP +++AP
Sbjct: 960 KLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPL 1018
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMR--EEFFSE-RGR-------FNVLITHY 223
+ +PNW EF TW + VVY G R+ ++ E +F + +GR F+ +IT +
Sbjct: 1019 STIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTF 1077
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L+ + W +++DE HRLKN C L + + ++ ++LLTGTP+QN+++EL
Sbjct: 1078 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1137
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRLHHVIRPFILRRKK 342
+SLL+FL P+ F S F + F K QV L + +++RRL + + +++
Sbjct: 1138 FSLLHFLEPSRFPSETTFMQEFG-DLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEE 1196
Query: 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+E L I K ++ + + T + + G G +L N M+LRKCCN
Sbjct: 1197 TIIEVELTN----IQK---KYYRAILEKNFTFLSKGG---GQANVPNLLNTMMELRKCCN 1246
Query: 403 HPYLFVGE-----------YNM----WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFS 447
HPYL G +N ++ + +I+A+GK L+D+LLPKL+ GHRVL+FS
Sbjct: 1247 HPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFS 1306
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+
Sbjct: 1307 QMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI 1366
Query: 508 NLQTADTVIIFDSDWNPQMDQ--QAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 565
NL ADT IIFDSDWNP+M QA+ R HRIGQ K V+++ L++ S E + ++A K
Sbjct: 1367 NLTAADTCIIFDSDWNPKMISSFQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLK 1426
Query: 566 MGIDAKVIQA--GLFNTTSTAQD-RREMLKEIMRRG 598
+G+D V+Q+ G N + Q ++ +++++R+G
Sbjct: 1427 LGLDKAVLQSMSGRENAPNGVQQLSKKEIEDLLRKG 1462
Score = 53 (23.7 bits), Expect = 6.2e-85, Sum P(2) = 6.2e-85
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 626 FEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGH-ESSSITGK 680
F++ DE+ K R+ + E+ E+A S P++KEE H ESS+ G+
Sbjct: 1850 FDREDEDPEYKPT-RTPFKD--EIDEFANSPPEDKEEPMEIRAPGKHGESSAEFGQ 1902
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 858 (307.1 bits), Expect = 9.8e-85, Sum P(2) = 9.8e-85
Identities = 199/514 (38%), Positives = 304/514 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+IA + + N G+ GP +++AP
Sbjct: 810 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVY-NVGIHGPFLVIAPL 868
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE--RGR-------FNVLITHY 223
+ + NW EF+TW + +VY G R+ +++ E + + RGR F+ LIT +
Sbjct: 869 STITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTF 927
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L++++W +I+DE HRLKN C L ++ ++ ++LLTGTP+QN+++EL
Sbjct: 928 EMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEEL 987
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343
+SLL+FL P+ F S F KD G L EEQ+ ++ + + + R K+D
Sbjct: 988 FSLLHFLEPSQFPSESEF-------LKDFGD--LKTEEQVQKLQAILKPM--MLRRLKED 1036
Query: 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+ P + +I + +K Y + + + G +L N M+LRKCCN
Sbjct: 1037 VEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCN 1096
Query: 403 HPYLFVG-------EYNM--------WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFS 447
HPYL G E+ + + ++R++GK L+D+LLPKL+ GH+VL+FS
Sbjct: 1097 HPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFS 1156
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+
Sbjct: 1157 QMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI 1216
Query: 508 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 567
NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S E + ++A K+G
Sbjct: 1217 NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLG 1276
Query: 568 IDAKVIQA--GLF-NTTSTAQDRREMLKEIMRRG 598
+D V+Q+ G N T Q ++ +++++R+G
Sbjct: 1277 LDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKG 1310
Score = 40 (19.1 bits), Expect = 9.8e-85, Sum P(2) = 9.8e-85
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 589 EMLKEIMRRGTSSLGTDVPSEREINRLAAR 618
E+L+ R G S ++ + + + LAAR
Sbjct: 1932 ELLRGAARHGVSQTDCNIMQDPDFSFLAAR 1961
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 858 (307.1 bits), Expect = 9.8e-85, Sum P(2) = 9.8e-85
Identities = 199/514 (38%), Positives = 304/514 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+IA + + N G+ GP +++AP
Sbjct: 810 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVY-NVGIHGPFLVIAPL 868
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE--RGR-------FNVLITHY 223
+ + NW EF+TW + +VY G R+ +++ E + + RGR F+ LIT +
Sbjct: 869 STITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTF 927
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L++++W +I+DE HRLKN C L ++ ++ ++LLTGTP+QN+++EL
Sbjct: 928 EMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEEL 987
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343
+SLL+FL P+ F S F KD G L EEQ+ ++ + + + R K+D
Sbjct: 988 FSLLHFLEPSQFPSESEF-------LKDFGD--LKTEEQVQKLQAILKPM--MLRRLKED 1036
Query: 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+ P + +I + +K Y + + + G +L N M+LRKCCN
Sbjct: 1037 VEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCN 1096
Query: 403 HPYLFVG-------EYNM--------WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFS 447
HPYL G E+ + + ++R++GK L+D+LLPKL+ GH+VL+FS
Sbjct: 1097 HPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFS 1156
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+
Sbjct: 1157 QMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI 1216
Query: 508 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 567
NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S E + ++A K+G
Sbjct: 1217 NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLG 1276
Query: 568 IDAKVIQA--GLF-NTTSTAQDRREMLKEIMRRG 598
+D V+Q+ G N T Q ++ +++++R+G
Sbjct: 1277 LDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKG 1310
Score = 40 (19.1 bits), Expect = 9.8e-85, Sum P(2) = 9.8e-85
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 589 EMLKEIMRRGTSSLGTDVPSEREINRLAAR 618
E+L+ R G S ++ + + + LAAR
Sbjct: 1932 ELLRGAARHGVSQTDCNIMQDPDFSFLAAR 1961
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 858 (307.1 bits), Expect = 9.8e-85, Sum P(2) = 9.8e-85
Identities = 199/514 (38%), Positives = 304/514 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+IA + + N G+ GP +++AP
Sbjct: 812 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVY-NVGIHGPFLVIAPL 870
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE--RGR-------FNVLITHY 223
+ + NW EF+TW + +VY G R+ +++ E + + RGR F+ LIT +
Sbjct: 871 STITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTF 929
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L++++W +I+DE HRLKN C L ++ ++ ++LLTGTP+QN+++EL
Sbjct: 930 EMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEEL 989
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343
+SLL+FL P+ F S F KD G L EEQ+ ++ + + + R K+D
Sbjct: 990 FSLLHFLEPSQFPSESEF-------LKDFGD--LKTEEQVQKLQAILKPM--MLRRLKED 1038
Query: 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+ P + +I + +K Y + + + G +L N M+LRKCCN
Sbjct: 1039 VEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCN 1098
Query: 403 HPYLFVG-------EYNM--------WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFS 447
HPYL G E+ + + ++R++GK L+D+LLPKL+ GH+VL+FS
Sbjct: 1099 HPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFS 1158
Query: 448 QMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507
QM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+
Sbjct: 1159 QMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI 1218
Query: 508 NLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMG 567
NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S E + ++A K+G
Sbjct: 1219 NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLG 1278
Query: 568 IDAKVIQA--GLF-NTTSTAQDRREMLKEIMRRG 598
+D V+Q+ G N T Q ++ +++++R+G
Sbjct: 1279 LDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKG 1312
Score = 40 (19.1 bits), Expect = 9.8e-85, Sum P(2) = 9.8e-85
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 589 EMLKEIMRRGTSSLGTDVPSEREINRLAAR 618
E+L+ R G S ++ + + + LAAR
Sbjct: 1934 ELLRGAARHGVSQTDCNIMQDPDFSFLAAR 1963
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 538 (194.4 bits), Expect = 1.5e-84, Sum P(2) = 1.5e-84
Identities = 124/310 (40%), Positives = 178/310 (57%)
Query: 106 QPTLLQGG-ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT 164
QP +L +L+ YQL GL W++ L N L+GILADEMGLGKTIQ I+ +A+L + +G
Sbjct: 419 QPEILSSTFQLKPYQLIGLNWLVLLHQNKLSGILADEMGLGKTIQAISFLAHLYQ-EGNH 477
Query: 165 GPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYD 224
GPH+I P + L NW+ E + W PS +VY G D+RK MR E ++ +N++++ Y+
Sbjct: 478 GPHLITVPASTLDNWVRELNLWCPSFKVLVYYGSADDRKYMRYEILNQIVEYNIIVSTYN 537
Query: 225 LIM---RDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQ 281
L + DR K++ Y + DEGH LKN + + + RLLLTGTP+QN+L
Sbjct: 538 LAIGNSSDRSLFCKLKLEYAVFDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQNNLL 597
Query: 282 ELWSLLNFLLPTIFNS-VENFEEWFNAPFKDRGQVALTDEEQLLIIR-RLHH---VIRPF 336
EL SLLNF++P +F+S + F+ + EEQ R R+ H +++PF
Sbjct: 598 ELMSLLNFIMPNMFSSSTSQIAKMFSMK---------SSEEQSSFERDRITHAKLIMKPF 648
Query: 337 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQ 396
ILRR K EV K LP K + + C MS Q+ Y + + + G+ + L N+ MQ
Sbjct: 649 ILRRVKSEVLKQLPAKEEQVEFCAMSERQQELYSALLHKLK---HSSNGEKRELTNVMMQ 705
Query: 397 LRKCCNHPYL 406
LRK NHP L
Sbjct: 706 LRKMSNHPLL 715
Score = 373 (136.4 bits), Expect = 1.5e-84, Sum P(2) = 1.5e-84
Identities = 80/186 (43%), Positives = 122/186 (65%)
Query: 388 KSLQNLS-MQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLF 446
+ ++ LS +L + C Y + EY + +++ SGK LL +LL L++ G RV+LF
Sbjct: 748 EDMEVLSDFELHRLCQQ-YSALHEYQL--NTDVLLDSGKLSLLTQLLNSLKEKGDRVVLF 804
Query: 447 SQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLG 506
SQ T ++DILE++L+ + ++ RLDGST +R L+ QFN D F+FLLSTRAGGLG
Sbjct: 805 SQFTMMLDILEVFLRHHKHRYNRLDGSTPMSDRIGLIDQFNT-DQDIFVFLLSTRAGGLG 863
Query: 507 LNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM 566
+NL +A+ VI+ D D NP D+QAE R HR+GQ K V+V L+S SIE+ +L ++K+
Sbjct: 864 INLTSANVVILHDIDCNPYNDKQAEGRCHRVGQTKTVKVIKLISKDSIEDTMLRIGERKL 923
Query: 567 GIDAKV 572
++ ++
Sbjct: 924 KLEQEM 929
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 841 (301.1 bits), Expect = 3.9e-84, Sum P(3) = 3.9e-84
Identities = 198/515 (38%), Positives = 306/515 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+IA + + N G+ GP +++AP
Sbjct: 810 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVY-NVGIHGPFLVIAPL 868
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE--RGR-------FNVLITHY 223
+ + NW EF+TW + +VY G R+ +++ E + + RGR F+ LIT +
Sbjct: 869 STITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTF 927
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L++++W +I+DE HRLKN C L ++ ++ ++LLTGTP+QN+++EL
Sbjct: 928 EMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEEL 987
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRLHHVIRPFILRRKK 342
+SLL+FL P+ F S F + F K QV L + +++RRL + + +++
Sbjct: 988 FSLLHFLEPSQFPSESEFLKDFG-DLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQE 1046
Query: 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+E L I K ++ + + + + + G G +L N M+LRKCCN
Sbjct: 1047 TIIEVELTN----IQK---KYYRAILEKNFSFLSK-G--AGHTNMPNLLNTMMELRKCCN 1096
Query: 403 HPYLF-VG-------EYNM--------WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLF 446
HPYL G E+ + + ++R++GK L+D+LLPKL+ GH+VL+F
Sbjct: 1097 HPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIF 1156
Query: 447 SQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLG 506
SQM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG
Sbjct: 1157 SQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLG 1216
Query: 507 LNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM 566
+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S E + ++A K+
Sbjct: 1217 INLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKL 1276
Query: 567 GIDAKVIQA--GLF-NTTSTAQDRREMLKEIMRRG 598
G+D V+Q+ G N T Q ++ +++++R+G
Sbjct: 1277 GLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKG 1311
Score = 40 (19.1 bits), Expect = 3.9e-84, Sum P(3) = 3.9e-84
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 589 EMLKEIMRRGTSSLGTDVPSEREINRLAAR 618
E+L+ R G S ++ + + + LAAR
Sbjct: 1935 ELLRGAARHGVSQTDCNIMQDPDFSFLAAR 1964
Score = 40 (19.1 bits), Expect = 3.9e-84, Sum P(3) = 3.9e-84
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 644 MEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTL 692
MED +W +NK E G E + R K+ +A+T+
Sbjct: 2361 MEDRRKQKWQRCKKNNKAELNCL----GMEPAQTANSRNGKKGHHAETV 2405
>UNIPROTKB|J9NZH0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:AAEX03026896
Ensembl:ENSCAFT00000048721 Uniprot:J9NZH0
Length = 850
Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 194/533 (36%), Positives = 304/533 (57%)
Query: 143 GLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDER 202
GLGKT+QTIAL+ YL + + GPH+++ PK+ L NW+NEF W PS+ + + G D R
Sbjct: 3 GLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRVICFVGDKDAR 62
Query: 203 KA-MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS 261
A +R+E G ++V +T Y+++++++ KK W Y+++DE HR+KN + L++ +
Sbjct: 63 AAFIRDEMMP--GEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR 120
Query: 262 GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEE 321
++ RLLLTGTP+QN+L ELW+LLNFLLP +FNS ++F+ WF+ K+ L D++
Sbjct: 121 EFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDT--KN----CLGDQK 174
Query: 322 QLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTD-VGRVGL 380
++ RLH V++PF+LRR K +VEK LP K ++ + +S Q+ ++ + +
Sbjct: 175 ---LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWFVILAFFISENSN 231
Query: 381 DTGTGKSKSLQNLSMQLR--KCCNHPYLFVGEYNMWRKEEIIR-ASGKFELLDRLLPKLR 437
++ + N+ M LR KCC + + I K L + LR
Sbjct: 232 NSNKNHKLDILNVIMLLREAKCCGASFCLPSLDLLPSTLSISHIVLFKMTLFPGMKMILR 291
Query: 438 KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497
+ L + L Y + + + G + ++ FNAP+S F+F+
Sbjct: 292 QKSRCFLTSDSQFAFLSALPDYEHWPSYFYRSISGQYLFVYKKEAIEAFNAPNSSKFIFM 351
Query: 498 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEV 557
LSTRAGGLG+NL +AD VI++DSDWNPQ+D QA DRAHRIGQKK VRVF L++ ++EE
Sbjct: 352 LSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEER 411
Query: 558 ILERAKQKMGIDAKVIQAG-LFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSE---REIN 613
I+ERA+ K+ +D+ VIQ G L + S + EML +++R G + + SE +I
Sbjct: 412 IVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEML-QMIRHGATHVFASKESELTDEDIT 470
Query: 614 RLAARSDEEFWLFEKMDEERRQK--ENYRSRLMEDHEVPEWAYSAPDNKEEQK 664
L R +++ +M+E R QK E+ D E + + D +E+QK
Sbjct: 471 TLLERGEKKT---AEMNE-RLQKMGESSLRNFRMDTEQSLYKFEGEDYREKQK 519
>UNIPROTKB|F1NH79 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02061139 EMBL:AADN02061140 EMBL:AADN02061141
EMBL:AADN02061142 EMBL:AADN02061143 IPI:IPI00598956
Ensembl:ENSGALT00000023339 OMA:DGEHEHQ Uniprot:F1NH79
Length = 1895
Score = 846 (302.9 bits), Expect = 6.5e-84, Sum P(2) = 6.5e-84
Identities = 247/731 (33%), Positives = 384/731 (52%)
Query: 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT-GPHVIV 170
GG L YQLEGL W+ + + ILADEMGLGKT+QT A+ Y L +G + GP ++
Sbjct: 693 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQT-AVFLYSLYKEGHSKGPFLVS 751
Query: 171 APKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE----RG----------- 214
AP + + NW EF WAP + V Y G D R +RE EF E RG
Sbjct: 752 APLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFTFEDNAIRGGKKASRMKKEA 811
Query: 215 --RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272
+F+VL+T Y+LI D L + W +IVDE HRLKN++ + ++GY +Q +LLLT
Sbjct: 812 AVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 871
Query: 273 GTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332
GTP+QN+L+EL+ LLNFL P F+++E F E F D + E+Q I++LH +
Sbjct: 872 GTPLQNNLEELFHLLNFLTPERFHNLEGFLE----EFAD-----IAKEDQ---IKKLHDM 919
Query: 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQ 391
+ P +LRR K +V K +P K+++I++ ++S QK YY+ + L+ G G SL
Sbjct: 920 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLL 979
Query: 392 NLSMQLRKCCNHPYLF-VGEYN-------MWRKEEIIRASGKFELLDRLLPKLRKSGHRV 443
N+ M L+KCCNHPYLF V M+ +IRASGK LL ++L L++ GHRV
Sbjct: 980 NVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRV 1039
Query: 444 LLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503
L+FSQMT+++D+LE +L+ +K+ R+DG R + +FNAP + F FLLSTRAG
Sbjct: 1040 LIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQGFCFLLSTRAG 1099
Query: 504 G--LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRV--FVLVSVGSIEEVIL 559
G L L++++ + DS + + Q+ RAHR+GQ K+V FV S+
Sbjct: 1100 GPCLWSPLRSSERNV--DSSLSRKTMQKTYSRAHRLGQNKKVNDIRFVTKSISG-RSASS 1156
Query: 560 ERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARS 619
+ A+++M + V++ G T S + ++ L +I++ GT L D +E N+ S
Sbjct: 1157 QVAQKEMMLTHLVVRPGGSKTGSMS---KQELDDILKFGTEELFKDEATEGGDNKEGEDS 1213
Query: 620 DEEFWLFEKMDE--ERRQKENYRSRLMEDHE-VPEWAYSAPDNKEEQKGFEKGFGHESSS 676
+ + ++ +R Q E + L +E + + + +EE+ G E+ E
Sbjct: 1214 SVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREII- 1272
Query: 677 ITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR-REYLPSEGNESASNSTGAE 735
K++E V D L + +D+++ +GKR R+ + N+ + +
Sbjct: 1273 -----KQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQV--NYNDGSQEDRDWQ 1325
Query: 736 KKNLDMKNEIFPLASEGTSEDTFGSAPKRLRFERRNSESSDIQSVEKSEHKGVQGSGLNG 795
D +++ + +ASE ED F +R RR S +K + G N
Sbjct: 1326 DDQSDNQSD-YSVASEEGDED-FD---ERSEAARRPSRKGLRNDKDKPLPPLLARVGGNI 1380
Query: 796 HILTWNTHRKK 806
+L +N ++K
Sbjct: 1381 EVLGFNARQRK 1391
Score = 39 (18.8 bits), Expect = 6.5e-84, Sum P(2) = 6.5e-84
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 121 EGLQWMLSLFNNNLNGILADEMG 143
EG+QW N+ IL D +G
Sbjct: 387 EGIQWEAKEDNSEGEEILEDVVG 409
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 841 (301.1 bits), Expect = 7.3e-84, Sum P(3) = 7.3e-84
Identities = 198/515 (38%), Positives = 306/515 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+IA + + N G+ GP +++AP
Sbjct: 763 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVY-NVGIHGPFLVIAPL 821
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE--RGR-------FNVLITHY 223
+ + NW EF+TW + +VY G R+ +++ E + + RGR F+ LIT +
Sbjct: 822 STITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTF 880
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L++++W +I+DE HRLKN C L ++ ++ ++LLTGTP+QN+++EL
Sbjct: 881 EMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEEL 940
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRLHHVIRPFILRRKK 342
+SLL+FL P+ F S F + F K QV L + +++RRL + + +++
Sbjct: 941 FSLLHFLEPSQFPSESEFLKDFG-DLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQE 999
Query: 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+E L I K ++ + + + + + G G +L N M+LRKCCN
Sbjct: 1000 TIIEVELTN----IQK---KYYRAILEKNFSFLSK-G--AGHTNMPNLLNTMMELRKCCN 1049
Query: 403 HPYLF-VG-------EYNM--------WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLF 446
HPYL G E+ + + ++R++GK L+D+LLPKL+ GH+VL+F
Sbjct: 1050 HPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIF 1109
Query: 447 SQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLG 506
SQM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG
Sbjct: 1110 SQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLG 1169
Query: 507 LNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM 566
+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S E + ++A K+
Sbjct: 1170 INLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKL 1229
Query: 567 GIDAKVIQA--GLF-NTTSTAQDRREMLKEIMRRG 598
G+D V+Q+ G N T Q ++ +++++R+G
Sbjct: 1230 GLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKG 1264
Score = 40 (19.1 bits), Expect = 7.3e-84, Sum P(3) = 7.3e-84
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 589 EMLKEIMRRGTSSLGTDVPSEREINRLAAR 618
E+L+ R G S ++ + + + LAAR
Sbjct: 1886 ELLRGAARHGVSQTDCNIMQDPDFSFLAAR 1915
Score = 37 (18.1 bits), Expect = 7.3e-84, Sum P(3) = 7.3e-84
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 644 MEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTL 692
MED +W +NK E G E + R K+ +A+T+
Sbjct: 2312 MEDRRKQKWQRYKKNNKAELNCL----GIEPVQMANSRNGKKGHHAETV 2356
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 524 (189.5 bits), Expect = 1.7e-83, Sum P(2) = 1.7e-83
Identities = 118/322 (36%), Positives = 184/322 (57%)
Query: 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGP 166
P L +G L YQL G++W++ ++N +LN IL DEMGLGKTIQ +A ++YL + G TGP
Sbjct: 386 PLLKEGCTLHDYQLIGVKWLIMMYNKDLNAILGDEMGLGKTIQIVAFLSYL-KQIGKTGP 444
Query: 167 HVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI 226
H+IV P + + NWI EF W PSI + Y G DERK +R ++ +V++T Y+++
Sbjct: 445 HLIVVPSSTIENWIGEFHKWCPSIQLLTYYGSQDERKHLRHRVKKQKDHIDVILTTYNMV 504
Query: 227 MR---DRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
D+++ K Y+I DEGH LKN + + + + ++++LLTGTP+QN+L EL
Sbjct: 505 TSKSDDKKFFKNFSLNYVIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIEL 564
Query: 284 WSLLNFLLPTIFNSV-ENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHH---VIRPFILR 339
SL+ F+L +FN E+ FK G T + L R+ +++P+ILR
Sbjct: 565 ISLMYFVLSKVFNKYCEDITHLLQH-FKQLGPALDTKNKALYQQDRIEEAKAILQPYILR 623
Query: 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRK 399
R K++V LP KS+ I++ +M QK Y + + + ++G SL M+LR+
Sbjct: 624 RLKNQVLGSLPSKSEQIIEVEMKKPQKQLYDNIVEALQQSEESGDSYG-SL----MRLRQ 678
Query: 400 CCNHPYLFVGEYNMWRKEEIIR 421
NHP L EY + ++I +
Sbjct: 679 AANHPLLRRSEYTDQKLDKIAK 700
Score = 382 (139.5 bits), Expect = 1.7e-83, Sum P(2) = 1.7e-83
Identities = 95/248 (38%), Positives = 145/248 (58%)
Query: 417 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKT 476
E++ SGK E LD +LP+++K G +VL+FSQ T ++DILE+YL + + + RLDG T
Sbjct: 746 EQLALKSGKCEQLDVMLPEIQKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPV 805
Query: 477 EERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHR 536
+R ++ +FN F+FLLSTRAGGLG+NL +A+ +II D D+NP D+QAEDR HR
Sbjct: 806 LDRQEMINEFNL-SKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHR 864
Query: 537 IGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMR 596
+GQ+K V V LVS G++E +L AK+K+ ++ +V G+ +D LKE
Sbjct: 865 MGQEKPVHVTRLVSKGTVEVGMLALAKKKLQLEKQVTD-GVKGQLD--EDALRELKE-EE 920
Query: 597 RGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSA 656
G G D+ S+ + ++ R D+ + + + + + + ED V E
Sbjct: 921 GGEQCGGRDL-SKLLSSAISGRYDD---VEDDSGDSKNGIDAEEAAKKEDEAVKE----- 971
Query: 657 PDNKEEQK 664
P KE+QK
Sbjct: 972 PVEKEQQK 979
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 836 (299.3 bits), Expect = 3.8e-83, Sum P(2) = 3.8e-83
Identities = 230/669 (34%), Positives = 355/669 (53%)
Query: 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
+K+ + +LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I ++ +
Sbjct: 244 QKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL- 302
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREE---FFSERG--- 214
G+ GP +I+AP + + NW EF TW + A+VY G R+ +++ + +G
Sbjct: 303 MGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDTQGNPL 361
Query: 215 ----RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLL 270
+F V+IT +++I+ D LKK+QW +++DE HRLKN C L + + ++ ++L
Sbjct: 362 PGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVL 421
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLH 330
LTGTP+QNS++EL+SLLNFL P F S F E F D L EEQ+ ++ +
Sbjct: 422 LTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFG----D-----LKTEEQVKKLQSIL 472
Query: 331 HVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGKSKS 389
+ + R K D + P + +I + +K Y + + + +
Sbjct: 473 KPM--MLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGANQHNMPN 530
Query: 390 LQNLSMQLRKCCNHPYLFVG-EYNM---WRK-----------EEIIRASGKFELLDRLLP 434
L N M+LRKCCNHPYL G E + +RK + +I+A+GK L+D+LLP
Sbjct: 531 LINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLIDKLLP 590
Query: 435 KLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494
KL GH+VL+FSQM R +DILE YL + + R+DG + R + +F PDS F
Sbjct: 591 KLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRF 650
Query: 495 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554
+FLL TRAGGLG+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S
Sbjct: 651 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 710
Query: 555 EEVILERAKQKMGIDAKVIQ-AGLFNTTSTAQDRREM-LKEIMRRGTSSLGTDVPSE--- 609
E + ++A K+G+D V+Q T+ Q +M +++++R+G D E
Sbjct: 711 EREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSK 770
Query: 610 ---REINRLAARSDEEFWLFEKMDEERRQKENY-----RSRL-MEDHEV-PEWAYSAPDN 659
+I+++ R + + + K ++ R+ + ++D +WA A +
Sbjct: 771 FCEEDIDQILQRRTQTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELD 830
Query: 660 KEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR--- 716
+ + EK ES I R RK+ + ++ + + M+ E D + TR +R
Sbjct: 831 TDAKN--EK----ESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRFNE 884
Query: 717 --REYLPSE 723
R YL +E
Sbjct: 885 KTRRYLRAE 893
Score = 43 (20.2 bits), Expect = 3.8e-83, Sum P(2) = 3.8e-83
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 752 GTSEDTFGSAPKRLRFERRNSESSDIQSVEKSE-----HKGVQGSGLNG 795
GT +T PK+ R ++ DI ++ E HKG G L G
Sbjct: 1913 GTDPETHRDKPKQRRQRCKDPSKLDISALTGEERVPVVHKGT-GRRLGG 1960
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 836 (299.3 bits), Expect = 3.8e-83, Sum P(2) = 3.8e-83
Identities = 230/669 (34%), Positives = 355/669 (53%)
Query: 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
+K+ + +LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I ++ +
Sbjct: 244 QKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL- 302
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREE---FFSERG--- 214
G+ GP +I+AP + + NW EF TW + A+VY G R+ +++ + +G
Sbjct: 303 MGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDTQGNPL 361
Query: 215 ----RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLL 270
+F V+IT +++I+ D LKK+QW +++DE HRLKN C L + + ++ ++L
Sbjct: 362 PGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVL 421
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLH 330
LTGTP+QNS++EL+SLLNFL P F S F E F D L EEQ+ ++ +
Sbjct: 422 LTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFG----D-----LKTEEQVKKLQSIL 472
Query: 331 HVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGKSKS 389
+ + R K D + P + +I + +K Y + + + +
Sbjct: 473 KPM--MLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGANQHNMPN 530
Query: 390 LQNLSMQLRKCCNHPYLFVG-EYNM---WRK-----------EEIIRASGKFELLDRLLP 434
L N M+LRKCCNHPYL G E + +RK + +I+A+GK L+D+LLP
Sbjct: 531 LINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLIDKLLP 590
Query: 435 KLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494
KL GH+VL+FSQM R +DILE YL + + R+DG + R + +F PDS F
Sbjct: 591 KLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRF 650
Query: 495 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554
+FLL TRAGGLG+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S
Sbjct: 651 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 710
Query: 555 EEVILERAKQKMGIDAKVIQ-AGLFNTTSTAQDRREM-LKEIMRRGTSSLGTDVPSE--- 609
E + ++A K+G+D V+Q T+ Q +M +++++R+G D E
Sbjct: 711 EREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSK 770
Query: 610 ---REINRLAARSDEEFWLFEKMDEERRQKENY-----RSRL-MEDHEV-PEWAYSAPDN 659
+I+++ R + + + K ++ R+ + ++D +WA A +
Sbjct: 771 FCEEDIDQILQRRTQTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELD 830
Query: 660 KEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR--- 716
+ + EK ES I R RK+ + ++ + + M+ E D + TR +R
Sbjct: 831 TDAKN--EK----ESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRFNE 884
Query: 717 --REYLPSE 723
R YL +E
Sbjct: 885 KTRRYLRAE 893
Score = 43 (20.2 bits), Expect = 3.8e-83, Sum P(2) = 3.8e-83
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 752 GTSEDTFGSAPKRLRFERRNSESSDIQSVEKSE-----HKGVQGSGLNG 795
GT +T PK+ R ++ DI ++ E HKG G L G
Sbjct: 1915 GTDPETHRDKPKQRRQRCKDPSKLDISALTGEERVPVVHKGT-GRRLGG 1962
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 841 (301.1 bits), Expect = 6.2e-83, Sum P(2) = 6.2e-83
Identities = 198/515 (38%), Positives = 306/515 (59%)
Query: 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173
+LR YQLEG+ W+L + N N ILADEMGLGKTIQ+IA + + N G+ GP +++AP
Sbjct: 810 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVY-NVGIHGPFLVIAPL 868
Query: 174 AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE--RGR-------FNVLITHY 223
+ + NW EF+TW + +VY G R+ +++ E + + RGR F+ LIT +
Sbjct: 869 STITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTF 927
Query: 224 DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283
++I+ D L++++W +I+DE HRLKN C L ++ ++ ++LLTGTP+QN+++EL
Sbjct: 928 EMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEEL 987
Query: 284 WSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRLHHVIRPFILRRKK 342
+SLL+FL P+ F S F + F K QV L + +++RRL + + +++
Sbjct: 988 FSLLHFLEPSQFPSESEFLKDFG-DLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQE 1046
Query: 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402
+E L I K ++ + + + + + G G +L N M+LRKCCN
Sbjct: 1047 TIIEVELTN----IQK---KYYRAILEKNFSFLSK-G--AGHTNMPNLLNTMMELRKCCN 1096
Query: 403 HPYLF-VG-------EYNM--------WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLF 446
HPYL G E+ + + ++R++GK L+D+LLPKL+ GH+VL+F
Sbjct: 1097 HPYLINAGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIF 1156
Query: 447 SQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLG 506
SQM R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG
Sbjct: 1157 SQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLG 1216
Query: 507 LNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM 566
+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S E + ++A K+
Sbjct: 1217 INLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKL 1276
Query: 567 GIDAKVIQA--GLF-NTTSTAQDRREMLKEIMRRG 598
G+D V+Q+ G N T Q ++ +++++R+G
Sbjct: 1277 GLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKG 1311
Score = 40 (19.1 bits), Expect = 6.2e-83, Sum P(2) = 6.2e-83
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 589 EMLKEIMRRGTSSLGTDVPSEREINRLAAR 618
E+L+ R G S ++ + + + LAAR
Sbjct: 1933 ELLRGAARHGVSQTDCNIMQDPDFSFLAAR 1962
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 828 (296.5 bits), Expect = 6.2e-83, Sum P(2) = 6.2e-83
Identities = 205/533 (38%), Positives = 301/533 (56%)
Query: 115 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 174
LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I + + G+ GP +I+AP +
Sbjct: 913 LRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIYRT-GIKGPFLIIAPLS 971
Query: 175 VLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSE-------RG--RFNVLITHYD 224
+ NW EF TW + +VY G R+ +++ E + RG RF +IT ++
Sbjct: 972 TIANWEREFRTWT-HLNVIVYHGSVVSRQMLQQYEMYCRDSQGRVIRGAYRFQAVITTFE 1030
Query: 225 LIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELW 284
+I+ L + W +I+DE HRLKN C L + ++ ++LLTGTP+QN+++EL+
Sbjct: 1031 MILGGCPELNAIDWRCVIIDEAHRLKNKNCKLLEGFKLMSLEHKVLLTGTPLQNTVEELF 1090
Query: 285 SLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344
SLL+FL PT F S E F F D L EEQ+ ++ + + + R K+D
Sbjct: 1091 SLLHFLEPTRFPS----ENTFMQEFGD-----LKTEEQVQKLQAILKPM--MLRRLKEDV 1139
Query: 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGKSKSLQNLSMQLRKCCNH 403
+K P + +I + +K Y + + + G +L N M+LRKCCNH
Sbjct: 1140 EKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGAGQANVPNLLNTMMELRKCCNH 1199
Query: 404 PYLFVGE-----------YNM----WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQ 448
PYL G Y+ + + +I+++GK L+D+LLPK++ GH+VL+FSQ
Sbjct: 1200 PYLIKGAEEKIMEDFKEVYSPAAVDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQ 1259
Query: 449 MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLN 508
M R +DILE YL + + R+DG + R + +F+ PDS F+FLL TRAGGLG+N
Sbjct: 1260 MVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGIN 1319
Query: 509 LQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGI 568
L ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S E + +RA K+G+
Sbjct: 1320 LTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGL 1379
Query: 569 DAKVIQA--GLFNTTSTAQDRREML--KEI---MRRGTSSLGTDVPSEREINR 614
D V+Q+ G N+ + ++ L KEI +RRG + G + E E N+
Sbjct: 1380 DKAVLQSMSGRDNSLAGGGQMQQQLSKKEIEDLLRRG--AYGAIMDEEDEGNK 1430
Score = 55 (24.4 bits), Expect = 6.2e-83, Sum P(2) = 6.2e-83
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 707 ISKLSTRGKRREYLP---SEGNESASNSTGAEKKNLDMKNEIFPLASEGTSEDTFGS-AP 762
+SK S R RRE S+G+ S+S+S+ + + + + +S +S + S +
Sbjct: 2190 LSKRSRREARRESRSDSDSDGSSSSSSSSSSSRSSSSSSSSSRSGSSSSSSSSSCSSGSS 2249
Query: 763 KRLRFERRNSESSDIQSVEKSEH--KGVQG 790
+SE SD + K+ GV+G
Sbjct: 2250 SSSSSSSSSSEGSDSEEAPKNASVVPGVKG 2279
Score = 38 (18.4 bits), Expect = 6.1e-82, Sum P(3) = 6.1e-82
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 595 MRRGTSSLGTDVPSEREINR 614
++ GT G D P +E+++
Sbjct: 2543 LKDGTRLAGEDAPKRKELDQ 2562
Score = 37 (18.1 bits), Expect = 6.1e-82, Sum P(3) = 6.1e-82
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 762 PKRLRFERRNSESSDIQSVEKSE 784
PK+ R RN DI S+ E
Sbjct: 2591 PKQKRHRCRNPNKIDINSLTGEE 2613
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 836 (299.3 bits), Expect = 7.0e-83, P = 7.0e-83
Identities = 230/669 (34%), Positives = 355/669 (53%)
Query: 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
+K+ + +LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I ++ +
Sbjct: 369 QKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL- 427
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREE---FFSERG--- 214
G+ GP +I+AP + + NW EF TW + A+VY G R+ +++ + +G
Sbjct: 428 MGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDTQGNPL 486
Query: 215 ----RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLL 270
+F V+IT +++I+ D LKK+QW +++DE HRLKN C L + + ++ ++L
Sbjct: 487 PGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVL 546
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLH 330
LTGTP+QNS++EL+SLLNFL P F S F E F D L EEQ+ ++ +
Sbjct: 547 LTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFG----D-----LKTEEQVKKLQSIL 597
Query: 331 HVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGKSKS 389
+ + R K D + P + +I + +K Y + + + +
Sbjct: 598 KPM--MLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGANQHNMPN 655
Query: 390 LQNLSMQLRKCCNHPYLFVG-EYNM---WRK-----------EEIIRASGKFELLDRLLP 434
L N M+LRKCCNHPYL G E + +RK + +I+A+GK L+D+LLP
Sbjct: 656 LINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLIDKLLP 715
Query: 435 KLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494
KL GH+VL+FSQM R +DILE YL + + R+DG + R + +F PDS F
Sbjct: 716 KLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRF 775
Query: 495 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554
+FLL TRAGGLG+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S
Sbjct: 776 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 835
Query: 555 EEVILERAKQKMGIDAKVIQ-AGLFNTTSTAQDRREM-LKEIMRRGTSSLGTDVPSE--- 609
E + ++A K+G+D V+Q T+ Q +M +++++R+G D E
Sbjct: 836 EREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSK 895
Query: 610 ---REINRLAARSDEEFWLFEKMDEERRQKENY-----RSRL-MEDHEV-PEWAYSAPDN 659
+I+++ R + + + K ++ R+ + ++D +WA A +
Sbjct: 896 FCEEDIDQILQRRTQTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELD 955
Query: 660 KEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR--- 716
+ + EK ES I R RK+ + ++ + + M+ E D + TR +R
Sbjct: 956 TDAKN--EK----ESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRFNE 1009
Query: 717 --REYLPSE 723
R YL +E
Sbjct: 1010 KTRRYLRAE 1018
>ASPGD|ASPL0000048785 [details] [associations]
symbol:AN1956 species:162425 "Emericella nidulans"
[GO:0016581 "NuRD complex" evidence=IEA] [GO:0033553 "rDNA
heterochromatin" evidence=IEA] [GO:0044732 "mitotic spindle pole
body" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0031934 "mating-type region heterochromatin"
evidence=IEA] [GO:0031933 "telomeric heterochromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0030702 "chromatin silencing at centromere" evidence=IEA]
InterPro:IPR000014 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00091 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0004871
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
EMBL:AACD01000029 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OrthoDB:EOG4GQTD1 RefSeq:XP_659560.1 ProteinModelPortal:Q5BBX4
EnsemblFungi:CADANIAT00008616 GeneID:2875239 KEGG:ani:AN1956.2
HOGENOM:HOG000192830 OMA:SFARVWA Uniprot:Q5BBX4
Length = 1443
Score = 836 (299.3 bits), Expect = 1.8e-82, P = 1.8e-82
Identities = 240/727 (33%), Positives = 372/727 (51%)
Query: 106 QPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTG 165
QP ++ GGE+ YQ +GL W+ + N ILADEMGLGKTIQ I L+A L+++
Sbjct: 597 QPRIMTGGEIMDYQRDGLNWLYFKWFKQQNAILADEMGLGKTIQVIGLLATLVQDHKCW- 655
Query: 166 PHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERG----RFNVLIT 221
P +IV P + PNW E TW PS+ AV Y G RK +E RG R +V+IT
Sbjct: 656 PFLIVVPNSTCPNWRKELKTWVPSLRAVTYYGSSLARKMAQEHEMFIRGDPDLRCHVVIT 715
Query: 222 HYDLIMRD--RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNS 279
Y+ ++ D R+ L ++ W +IVDEG RLK+ + + + +S + ++L+TGTP+QN+
Sbjct: 716 SYETMVDDSCRKVLSRIPWAGLIVDEGQRLKSDKSQIYEGLSKMKFPFKVLMTGTPLQNN 775
Query: 280 LQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339
+EL++LL F + + E EE + K+ I LH +IRPF LR
Sbjct: 776 TKELFNLLQFCDQS--KNAEELEEKYGTLSKEN-------------IPELHELIRPFFLR 820
Query: 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQV----TDV-----GRVGLDTGTGKSK-- 388
R K +V +LP Q+I+ MS QK Y+ + T + R D +++
Sbjct: 821 RTKAQVLTFLPPVVQIIVPVTMSVLQKKLYKSILAKNTQLIKAIFQRNEEDQPLKQTERH 880
Query: 389 SLQNLSMQLRKCCNHPYLF---VGEYN---MWRKEEIIRASGKFELLDRLLPKLRKSGHR 442
+L N+ MQLRKC HP++F + E ++ A+GK +LL+ +LPKL+ GHR
Sbjct: 881 NLNNILMQLRKCLCHPFIFSKAIEERTDDPEVAHRNLVDAAGKLQLLELMLPKLQARGHR 940
Query: 443 VLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502
VL+FSQ +D++E +L RLDG + E+ ++ +NA +SPYF FLLSTR+
Sbjct: 941 VLVFSQFLENLDVMEDFLDGLGLPHRRLDGRMTSLEKQRMIDDYNAENSPYFAFLLSTRS 1000
Query: 503 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 562
GG+G+NL TADTVII D D+NP D QA RAHRIGQK +V VF L+ GS EE I++
Sbjct: 1001 GGVGINLATADTVIIMDPDFNPHQDMQALSRAHRIGQKNKVLVFQLMIRGSAEEKIMQIG 1060
Query: 563 KQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEE 622
++KM +D +I + + D E L+ I+R G +L D + +I + D
Sbjct: 1061 RKKMVLDHVLI-----DRMAAEDDDGEDLESILRHGAKALFDD-DNSGDIIYTSESVDR- 1113
Query: 623 FWLFEKMDEERRQKENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRK 682
L ++ E+ + E WA + E+Q + E +I+ +
Sbjct: 1114 --LLDRSQAEQATNPDTNVSASEFSFAQVWAADS-QGLEDQLNVAE----EDPTISNQTW 1166
Query: 683 RKEVVYADTLSDLQWMKAVENGQDISKLSTRGKRR----EYLPSEGNESASNSTGAEKKN 738
K L + + A E + +++ RGKR+ +Y + + + + + + +
Sbjct: 1167 EK------ILQERE-RAAAEEARKKAEILGRGKRKRATVDYSAVDADPAPARALASRETE 1219
Query: 739 LD--MKNEIFPLASEGTSEDTF----GSA--PKRLRFERRNSESSDIQSVEKSEHKGVQG 790
D + + +AS+ + ED G+ PK F+R Q+ + + G
Sbjct: 1220 SDAEFREDEAGVASDYSMEDDISVYEGATIKPKVHAFQRVILLPQVAQTPQSVQAPTPNG 1279
Query: 791 SGLNGHI 797
G+NGH+
Sbjct: 1280 VGMNGHV 1286
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 842 (301.5 bits), Expect = 2.1e-82, P = 2.1e-82
Identities = 233/669 (34%), Positives = 358/669 (53%)
Query: 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
+K+ + +LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I ++ +
Sbjct: 447 QKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL- 505
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREE---FFSERG--- 214
+G+ GP +I+AP + + NW EF TW + A+VY G R+ +++ + +G
Sbjct: 506 RGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPL 564
Query: 215 ----RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLL 270
+F+V+IT +++I+ D LKK+ W +I+DE HRLKN C L + + ++ ++L
Sbjct: 565 SGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVL 624
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRL 329
LTGTP+QNS++EL+SLLNFL P+ F S F E F K QV L + +++RRL
Sbjct: 625 LTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG-DLKTEEQVKKLQSILKPMMLRRL 683
Query: 330 HHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKS 389
+ + +++ +E L I K A + + +T G +
Sbjct: 684 KDDVEKNLAPKQETIIEVELTN----IQKKYYRAILEKNFSFLTK-G-----ANQHNMPN 733
Query: 390 LQNLSMQLRKCCNHPYLFVG-EYNM---WRK-----------EEIIRASGKFELLDRLLP 434
L N M+LRKCCNHPYL G E + +RK + +I+A+GK L+D+LLP
Sbjct: 734 LINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLP 793
Query: 435 KLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494
KL GH+VL+FSQM R +DILE YL + + R+DG + R + +F PDS F
Sbjct: 794 KLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRF 853
Query: 495 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554
+FLL TRAGGLG+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S
Sbjct: 854 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 913
Query: 555 EEVILERAKQKMGIDAKVIQ-AGLFNTTSTAQDRREM-LKEIMRRGTSSLGTDVPSE--- 609
E + ++A K+G+D V+Q +T+ Q +M +++++R+G D E
Sbjct: 914 EREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSK 973
Query: 610 ---REINRLAARSDEEFWLFEKMDEERRQKENY-----RSRL-MEDHEV-PEWAYSAPDN 659
+I+++ R + + K ++ R+ + ++D +WA A +
Sbjct: 974 FCEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELD 1033
Query: 660 KEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR--- 716
E + EK ES I R RK+ + ++ + + M+ E D + TR +R
Sbjct: 1034 TEAKN--EK----ESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRLND 1087
Query: 717 --REYLPSE 723
R YL +E
Sbjct: 1088 KTRRYLRAE 1096
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 842 (301.5 bits), Expect = 2.1e-82, P = 2.1e-82
Identities = 233/669 (34%), Positives = 358/669 (53%)
Query: 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
+K+ + +LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I ++ +
Sbjct: 447 QKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL- 505
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREE---FFSERG--- 214
+G+ GP +I+AP + + NW EF TW + A+VY G R+ +++ + +G
Sbjct: 506 RGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPL 564
Query: 215 ----RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLL 270
+F+V+IT +++I+ D LKK+ W +I+DE HRLKN C L + + ++ ++L
Sbjct: 565 SGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVL 624
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRL 329
LTGTP+QNS++EL+SLLNFL P+ F S F E F K QV L + +++RRL
Sbjct: 625 LTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG-DLKTEEQVKKLQSILKPMMLRRL 683
Query: 330 HHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKS 389
+ + +++ +E L I K A + + +T G +
Sbjct: 684 KDDVEKNLAPKQETIIEVELTN----IQKKYYRAILEKNFSFLTK-G-----ANQHNMPN 733
Query: 390 LQNLSMQLRKCCNHPYLFVG-EYNM---WRK-----------EEIIRASGKFELLDRLLP 434
L N M+LRKCCNHPYL G E + +RK + +I+A+GK L+D+LLP
Sbjct: 734 LINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLP 793
Query: 435 KLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494
KL GH+VL+FSQM R +DILE YL + + R+DG + R + +F PDS F
Sbjct: 794 KLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRF 853
Query: 495 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554
+FLL TRAGGLG+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S
Sbjct: 854 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 913
Query: 555 EEVILERAKQKMGIDAKVIQ-AGLFNTTSTAQDRREM-LKEIMRRGTSSLGTDVPSE--- 609
E + ++A K+G+D V+Q +T+ Q +M +++++R+G D E
Sbjct: 914 EREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSK 973
Query: 610 ---REINRLAARSDEEFWLFEKMDEERRQKENY-----RSRL-MEDHEV-PEWAYSAPDN 659
+I+++ R + + K ++ R+ + ++D +WA A +
Sbjct: 974 FCEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELD 1033
Query: 660 KEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR--- 716
E + EK ES I R RK+ + ++ + + M+ E D + TR +R
Sbjct: 1034 TEAKN--EK----ESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRLND 1087
Query: 717 --REYLPSE 723
R YL +E
Sbjct: 1088 KTRRYLRAE 1096
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 842 (301.5 bits), Expect = 2.1e-82, P = 2.1e-82
Identities = 230/669 (34%), Positives = 357/669 (53%)
Query: 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
+K+ + +LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I ++ +
Sbjct: 446 QKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL- 504
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREE---FFSERG--- 214
+G+ GP +I+AP + + NW EF TW + A+VY G R+ +++ + +G
Sbjct: 505 RGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPL 563
Query: 215 ----RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLL 270
+F+V+IT +++I+ D LKK+ W +I+DE HRLKN C L + + ++ ++L
Sbjct: 564 SGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVL 623
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLH 330
LTGTP+QNS++EL+SLLNFL P+ F S F E F D L EEQ+ ++ +
Sbjct: 624 LTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG----D-----LKTEEQVKKLQSIL 674
Query: 331 HVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVGRVGLDTGTGKSKS 389
+ + R K D + P + +I + +K Y + + + +
Sbjct: 675 KPM--MLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGANQHNMPN 732
Query: 390 LQNLSMQLRKCCNHPYLFVG-EYNM---WRK-----------EEIIRASGKFELLDRLLP 434
L N M+LRKCCNHPYL G E + +RK + +I+A+GK L+D+LLP
Sbjct: 733 LINTMMELRKCCNHPYLISGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLP 792
Query: 435 KLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494
KL GH+VL+FSQM R +DILE YL + + R+DG + R + +F PDS F
Sbjct: 793 KLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRF 852
Query: 495 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554
+FLL TRAGGLG+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S
Sbjct: 853 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 912
Query: 555 EEVILERAKQKMGIDAKVIQ-AGLFNTTSTAQDRREM-LKEIMRRGTSSLGTDVPSE--- 609
E + ++A K+G+D V+Q +T+ Q +M +++++R+G D E
Sbjct: 913 EREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSK 972
Query: 610 ---REINRLAARSDEEFWLFEKMDEERRQKENY-----RSRL-MEDHEV-PEWAYSAPDN 659
+I+++ R + + K ++ R+ + ++D +WA A +
Sbjct: 973 FCEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELD 1032
Query: 660 KEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR--- 716
E + EK ES + R RK+ + ++ + + M+ E D + TR +R
Sbjct: 1033 TEAKS--EK----ESLVLDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRLND 1086
Query: 717 --REYLPSE 723
R YL +E
Sbjct: 1087 KTRRYLRAE 1095
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 839 (300.4 bits), Expect = 4.3e-82, P = 4.3e-82
Identities = 233/669 (34%), Positives = 357/669 (53%)
Query: 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160
+K+ + +LR YQLEG+ W+L + N N ILADEMGLGKTIQ+I ++ +
Sbjct: 447 QKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL- 505
Query: 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREE---FFSERG--- 214
+G+ GP +I+AP + + NW EF TW + A+VY G R+ +++ + +G
Sbjct: 506 RGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPL 564
Query: 215 ----RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLL 270
+F+V+IT +++I+ D LKK+ W +I+DE HRLKN C L + + ++ ++L
Sbjct: 565 SGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVL 624
Query: 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVA-LTDEEQLLIIRRL 329
LTGTP+QNS++EL+SLLNFL P+ F S F E F K QV L + +++RRL
Sbjct: 625 LTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG-DLKTEEQVKKLQSILKPMMLRRL 683
Query: 330 HHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKS 389
+ + +++ +E L I K A + + +T G +
Sbjct: 684 KDDVEKNLAPKQETIIEVELTN----IQKKYYRAILEKNFSFLTK-G-----ANQHNMPN 733
Query: 390 LQNLSMQLRKCCNHPYLFVG-EYNM---WRK-----------EEIIRASGKFELLDRLLP 434
L N M+LRKCCNHPYL G E + +RK + +I+A+GK L+D+LLP
Sbjct: 734 LINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLP 793
Query: 435 KLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494
KL GH+VL+FSQM R +DILE YL + + R+DG + R + +F PDS F
Sbjct: 794 KLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRF 853
Query: 495 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554
+FLL TRAGGLG+NL ADT IIFDSDWNPQ D QA+ R HRIGQ K V+V+ L++ S
Sbjct: 854 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 913
Query: 555 EEVILERAKQKMGIDAKVIQ-AGLFNTTSTAQDRREM-LKEIMRRGTSSLGTDVPSE--- 609
E + ++A K+G+D V+Q T+ Q +M +++++R+G D E
Sbjct: 914 EREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSK 973
Query: 610 ---REINRLAARSDEEFWLFEKMDEERRQKENY-----RSRL-MEDHEV-PEWAYSAPDN 659
+I+++ R + + K ++ R+ + ++D +WA A +
Sbjct: 974 FCEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELD 1033
Query: 660 KEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSTRGKR--- 716
E + EK ES I R RK+ + ++ + + M+ E D + TR +R
Sbjct: 1034 TEAKN--EK----ESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRLND 1087
Query: 717 --REYLPSE 723
R YL +E
Sbjct: 1088 KARRYLRAE 1096
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 524 (189.5 bits), Expect = 8.6e-82, Sum P(3) = 8.6e-82
Identities = 115/281 (40%), Positives = 164/281 (58%)
Query: 98 SIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYL 157
+ K+ QP ++ +R YQL GL WM L+ +NGILADEMGLGKT+QTI+L+A++
Sbjct: 526 TFSHKLVAQPKIINK-VMRNYQLIGLNWMAVLYKEKINGILADEMGLGKTVQTISLLAHI 584
Query: 158 LENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSER-GR- 215
E GPH++V P +L NW EF TW PS++ V Y G ER+ +R E +R G+
Sbjct: 585 KEAYNDNGPHLVVVPATILANWEREFQTWCPSLSIVRYYGNLREREELRYELKKKRPGKD 644
Query: 216 FNVLITHYDLIM--RDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTG 273
FNV++T Y+L+ DR +LK+ + ++I+DE +KN + K I RLLLTG
Sbjct: 645 FNVILTTYNLLFANNDRGFLKRFDYSFLILDEAQNIKNSDSKRYKNIFKIGAHHRLLLTG 704
Query: 274 TPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVI 333
TP+QN+L ELWSLLNFL+P IF SV+ N + G D + I R+ ++
Sbjct: 705 TPLQNNLYELWSLLNFLMPHIFGSVKKDNYLLNQLLEYNGD----DCDSA--ITRMKKIL 758
Query: 334 RPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTD 374
PFILRR K V K L K + + C + +Q Y+ + +
Sbjct: 759 SPFILRRLKSTVSKELKPKIEHVEICKLPKFQDETYKNIIE 799
Score = 351 (128.6 bits), Expect = 8.6e-82, Sum P(3) = 8.6e-82
Identities = 79/194 (40%), Positives = 121/194 (62%)
Query: 401 CNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPK-LRKSGHRVLLFSQMTRLMDILEIY 459
C H L G+ E+ I S K L +L K + + +VL+FSQMTR++DILE
Sbjct: 963 CEHEDL--GDKYWIPDEQFIETSTKCLKLKEILAKEIGVNKSKVLIFSQMTRVLDILEDV 1020
Query: 460 LKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS-PYFMFLLSTRAGGLGLNLQTADTVIIF 518
L + + F RLDGST ER +++ F++ ++ P +FLLST +GGLG+NL A+ VI +
Sbjct: 1021 LDIFGYNFTRLDGSTPVNERQSIIDHFSSKETIP--VFLLSTNSGGLGINLTCANVVIFY 1078
Query: 519 DSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 578
D +NPQ+D+QAEDRAHR+GQ++EV ++ L++ +++ I E A QK ++ V++ G F
Sbjct: 1079 DLSFNPQVDRQAEDRAHRLGQEREVIIYKLLAENTVDINIHESANQKKKLNDNVLEEGTF 1138
Query: 579 NTTSTAQDRREMLK 592
N T + +LK
Sbjct: 1139 NNAETKLQSKNILK 1152
Score = 59 (25.8 bits), Expect = 8.6e-82, Sum P(3) = 8.6e-82
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 383 GTGKSKSLQNLSMQLRKCCNHPYL 406
G+G+ L N+ MQLRK NHP L
Sbjct: 889 GSGQFV-LNNILMQLRKAANHPLL 911
Score = 39 (18.8 bits), Expect = 5.9e-47, Sum P(2) = 5.9e-47
Identities = 9/47 (19%), Positives = 25/47 (53%)
Query: 660 KEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQD 706
KEE++ ++ + S+S K+++ +Y + + + +++G D
Sbjct: 817 KEEKEKEKQSLINSSNSSIKKKRKTSSIYKNNKIEKDEIIEIDDGGD 863
>POMBASE|SPBP35G2.10 [details] [associations]
symbol:mit1 "SHREC complex subunit Mit1" species:4896
"Schizosaccharomyces pombe" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000183 "chromatin silencing at rDNA" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IC] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005721 "centromeric
heterochromatin" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006342 "chromatin silencing" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0019787 "small conjugating protein
ligase activity" evidence=ISM] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0031933 "telomeric
heterochromatin" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0033553 "rDNA heterochromatin"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070824 "SHREC complex" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00490 PomBase:SPBP35G2.10 Prosite:PS00518 GO:GO:0005524
GO:GO:0044732 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006338 GO:GO:0030466
GO:GO:0000122 GO:GO:0000790 GO:GO:0030702 GO:GO:0000183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0005721 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016584 GO:GO:0019787 GO:GO:0033553
GO:GO:0016581 GO:GO:0031933 RefSeq:NP_595385.1
ProteinModelPortal:Q9P793 STRING:Q9P793 EnsemblFungi:SPBP35G2.10.1
GeneID:2541336 KEGG:spo:SPBP35G2.10 OrthoDB:EOG4GQTD1
NextBio:20802445 Uniprot:Q9P793
Length = 1418
Score = 796 (285.3 bits), Expect = 3.3e-78, P = 3.3e-78
Identities = 195/528 (36%), Positives = 295/528 (55%)
Query: 106 QPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTG 165
QP+ ++GG L YQL+GL W+ + + ILADEMGLGKT+Q I+ I+ L
Sbjct: 547 QPSFIKGGTLMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVLFYRHKCF- 605
Query: 166 PHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMRE-EFFSERG----RFNVLI 220
P +++ P A + NW E WAP + V G R +R+ +++ +VL+
Sbjct: 606 PVLVIVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLINQKDPKHVSTHVLV 665
Query: 221 THYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSL 280
+ R+ L+K QW +IVDEG RLKN + +L +S + +LLLTGTP+QN++
Sbjct: 666 ISASNVEREISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTGTPLQNNV 725
Query: 281 QELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340
+EL++LL FL P N+ E E+ ++ + D E+ + LH +++PF LRR
Sbjct: 726 RELFNLLQFLNPMKINAAE-LEKRYS----------IIDTEK---VTELHQILKPFFLRR 771
Query: 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTD---------VGRVGLDTGTG-KSKSL 390
K EV P K +VI+ M+ QK Y+ + G + G ++ SL
Sbjct: 772 VKSEVLDNFPTKVEVIIPLSMTPVQKGLYKSILSKNLSLLRNITGYANTSSSGGQRTTSL 831
Query: 391 QNLSMQLRKCCNHPYLF---VGEYNM---WRKEEIIRASGKFELLDRLLPKLRKSGHRVL 444
N+ MQLRK HPY++ + + N+ + AS KF +L L+PKL GHR+L
Sbjct: 832 NNILMQLRKTLAHPYIYSPDIEDRNLPYELAMRSLEEASCKFLILRLLVPKLITRGHRIL 891
Query: 445 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504
LFSQ + +DILE + + + + R DG++ ER + + FNAP+S FLLSTRAGG
Sbjct: 892 LFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCFLLSTRAGG 951
Query: 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564
+G+NL +ADTVII D D+NP D QA RAHR GQKK+V VFVL + S+EE I++ A++
Sbjct: 952 VGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDSVEEKIIQNAQK 1011
Query: 565 KMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREI 612
K+ +D ++++ L ++ +D L+ I+R G +L + E I
Sbjct: 1012 KLVLDHLIVES-LDQNHNSEKD----LESILRHGARALFEEAGDEPSI 1054
WARNING: HSPs involving 328 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 832 768 0.00092 121 3 11 22 0.42 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 578
No. of states in DFA: 627 (67 KB)
Total size of DFA: 394 KB (2191 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 72.78u 0.39s 73.17t Elapsed: 00:00:04
Total cpu time: 72.88u 0.40s 73.28t Elapsed: 00:00:05
Start: Mon May 20 17:46:36 2013 End: Mon May 20 17:46:41 2013
WARNINGS ISSUED: 2