Query 003311
Match_columns 832
No_of_seqs 549 out of 3051
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 21:06:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0386 Chromatin remodeling c 100.0 1E-150 3E-155 1289.2 41.1 787 1-828 306-1111(1157)
2 KOG0385 Chromatin remodeling c 100.0 1E-124 3E-129 1050.0 52.5 575 102-706 155-736 (971)
3 KOG0384 Chromodomain-helicase 100.0 4E-112 9E-117 988.5 39.2 507 101-621 357-888 (1373)
4 PLN03142 Probable chromatin-re 100.0 7E-101 1E-105 927.5 58.7 581 102-704 158-745 (1033)
5 KOG0391 SNF2 family DNA-depend 100.0 2E-100 4E-105 873.7 39.6 470 107-581 609-1416(1958)
6 KOG0389 SNF2 family DNA-depend 100.0 1.1E-97 2E-102 836.9 42.9 472 103-578 387-914 (941)
7 KOG0388 SNF2 family DNA-depend 100.0 2.4E-97 5E-102 819.2 33.1 464 104-581 558-1183(1185)
8 KOG0387 Transcription-coupled 100.0 6.6E-94 1.4E-98 807.7 36.9 465 113-580 204-686 (923)
9 KOG0392 SNF2 family DNA-depend 100.0 5.1E-91 1.1E-95 807.2 46.0 558 12-577 852-1479(1549)
10 KOG0390 DNA repair protein, SN 100.0 1.3E-73 2.9E-78 661.9 44.1 464 113-581 237-736 (776)
11 KOG1002 Nucleotide excision re 100.0 3.1E-73 6.6E-78 609.6 29.2 461 104-576 175-773 (791)
12 KOG1015 Transcription regulato 100.0 6.6E-72 1.4E-76 631.2 34.3 534 113-655 667-1381(1567)
13 COG0553 HepA Superfamily II DN 100.0 6.7E-69 1.4E-73 664.4 38.4 465 109-575 333-845 (866)
14 KOG4439 RNA polymerase II tran 100.0 1E-68 2.2E-73 595.7 33.1 466 102-586 314-894 (901)
15 KOG1016 Predicted DNA helicase 100.0 1.3E-60 2.7E-65 530.8 27.3 478 113-598 253-891 (1387)
16 KOG1000 Chromatin remodeling p 100.0 6.1E-57 1.3E-61 485.4 32.7 418 114-572 198-623 (689)
17 PRK04914 ATP-dependent helicas 100.0 4.6E-56 1E-60 536.6 32.1 432 112-577 150-630 (956)
18 KOG0383 Predicted helicase [Ge 100.0 9.7E-57 2.1E-61 517.5 11.9 390 103-506 282-696 (696)
19 KOG1001 Helicase-like transcri 100.0 6.6E-53 1.4E-57 492.8 19.6 438 117-573 135-671 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 9.6E-44 2.1E-48 385.7 21.5 277 118-407 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 5.4E-41 1.2E-45 393.8 35.9 379 112-600 253-664 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 4.6E-36 1E-40 367.1 34.6 433 113-569 14-496 (773)
23 KOG0298 DEAD box-containing he 100.0 1.4E-34 3E-39 341.1 18.0 261 131-407 372-691 (1394)
24 COG1111 MPH1 ERCC4-like helica 100.0 2.5E-31 5.5E-36 291.3 36.0 429 113-574 14-503 (542)
25 PHA02558 uvsW UvsW helicase; P 100.0 2E-30 4.3E-35 301.6 34.0 337 112-553 112-456 (501)
26 COG1061 SSL2 DNA or RNA helica 100.0 1.3E-30 2.9E-35 297.8 31.1 363 111-563 33-405 (442)
27 TIGR00614 recQ_fam ATP-depende 100.0 2.9E-27 6.2E-32 273.5 31.7 306 113-546 10-329 (470)
28 PTZ00110 helicase; Provisional 100.0 1.4E-26 3E-31 271.6 32.4 321 113-552 151-484 (545)
29 PRK11776 ATP-dependent RNA hel 100.0 1.9E-26 4.1E-31 266.3 32.7 316 113-552 25-349 (460)
30 KOG0354 DEAD-box like helicase 100.0 1.1E-25 2.4E-30 260.2 34.8 411 112-550 60-527 (746)
31 PRK10590 ATP-dependent RNA hel 99.9 8.1E-26 1.7E-30 260.6 30.7 316 113-551 22-351 (456)
32 PRK11192 ATP-dependent RNA hel 99.9 8.3E-26 1.8E-30 259.2 29.7 313 113-545 22-347 (434)
33 PLN00206 DEAD-box ATP-dependen 99.9 1.1E-25 2.4E-30 263.0 30.4 316 113-552 142-475 (518)
34 PRK11057 ATP-dependent DNA hel 99.9 1.9E-25 4.1E-30 265.4 32.8 301 113-543 24-336 (607)
35 TIGR01389 recQ ATP-dependent D 99.9 2.3E-25 5E-30 264.7 33.4 302 113-544 12-325 (591)
36 PRK04837 ATP-dependent RNA hel 99.9 7.3E-26 1.6E-30 258.7 27.9 316 113-551 29-361 (423)
37 PRK04537 ATP-dependent RNA hel 99.9 2E-25 4.4E-30 262.7 30.9 316 113-551 30-363 (572)
38 PRK01297 ATP-dependent RNA hel 99.9 2.8E-25 6E-30 257.6 31.4 318 113-552 108-442 (475)
39 PRK11634 ATP-dependent RNA hel 99.9 9.3E-25 2E-29 258.8 34.1 325 113-562 27-360 (629)
40 PTZ00424 helicase 45; Provisio 99.9 4.4E-25 9.5E-30 250.4 29.5 319 113-553 49-375 (401)
41 PLN03137 ATP-dependent DNA hel 99.9 6E-25 1.3E-29 264.4 30.0 309 113-547 459-784 (1195)
42 KOG0331 ATP-dependent RNA heli 99.9 8.2E-25 1.8E-29 246.3 27.4 312 113-542 112-440 (519)
43 KOG0330 ATP-dependent RNA heli 99.9 1.1E-24 2.4E-29 231.3 24.4 323 113-561 82-414 (476)
44 KOG1123 RNA polymerase II tran 99.9 1.1E-24 2.4E-29 236.2 22.9 380 112-603 300-713 (776)
45 TIGR00643 recG ATP-dependent D 99.9 5.1E-23 1.1E-27 245.6 32.2 304 113-544 234-560 (630)
46 COG0513 SrmB Superfamily II DN 99.9 5.6E-23 1.2E-27 239.1 31.0 332 113-565 50-392 (513)
47 PRK13767 ATP-dependent helicas 99.9 1.2E-22 2.6E-27 249.7 32.4 324 113-547 31-395 (876)
48 PRK10917 ATP-dependent DNA hel 99.9 2.1E-22 4.6E-27 242.0 32.7 308 112-550 259-587 (681)
49 TIGR03817 DECH_helic helicase/ 99.9 2.7E-22 5.9E-27 242.2 33.0 330 113-560 35-394 (742)
50 PRK11448 hsdR type I restricti 99.9 1.4E-22 3E-27 251.3 29.3 356 112-550 411-816 (1123)
51 TIGR00580 mfd transcription-re 99.9 2.5E-22 5.4E-27 245.1 30.9 308 112-552 449-770 (926)
52 PRK10689 transcription-repair 99.9 4E-22 8.6E-27 248.1 28.6 305 112-549 598-916 (1147)
53 PRK02362 ski2-like helicase; P 99.9 1.1E-21 2.3E-26 238.7 28.0 320 113-551 22-396 (737)
54 PRK01172 ski2-like helicase; P 99.9 1.4E-20 3.1E-25 227.1 30.2 309 113-549 21-375 (674)
55 TIGR01587 cas3_core CRISPR-ass 99.9 4.5E-20 9.8E-25 206.4 30.3 315 136-566 2-355 (358)
56 COG0514 RecQ Superfamily II DN 99.9 1.3E-20 2.9E-25 216.1 26.1 306 113-546 16-333 (590)
57 PRK00254 ski2-like helicase; P 99.9 2.3E-20 5E-25 226.5 29.4 317 113-553 22-389 (720)
58 KOG0338 ATP-dependent RNA heli 99.8 1.3E-19 2.9E-24 197.9 23.2 329 110-561 199-540 (691)
59 TIGR00348 hsdR type I site-spe 99.8 7.5E-19 1.6E-23 210.6 31.0 363 113-550 237-649 (667)
60 KOG0328 Predicted ATP-dependen 99.8 1.1E-19 2.4E-24 185.9 18.3 316 114-554 49-375 (400)
61 KOG0333 U5 snRNP-like RNA heli 99.8 3.7E-19 7.9E-24 195.3 23.5 342 114-552 267-624 (673)
62 KOG0350 DEAD-box ATP-dependent 99.8 6.6E-20 1.4E-24 200.2 17.1 354 113-552 158-540 (620)
63 TIGR02621 cas3_GSU0051 CRISPR- 99.8 5.1E-19 1.1E-23 210.9 25.6 106 438-548 270-390 (844)
64 COG1201 Lhr Lhr-like helicases 99.8 7.5E-19 1.6E-23 208.4 26.5 331 113-565 21-373 (814)
65 KOG0335 ATP-dependent RNA heli 99.8 3.7E-19 8E-24 197.7 22.1 314 112-547 94-441 (482)
66 KOG0340 ATP-dependent RNA heli 99.8 3.1E-19 6.7E-24 188.1 20.2 330 106-555 21-364 (442)
67 KOG0342 ATP-dependent RNA heli 99.8 5.5E-19 1.2E-23 193.3 21.7 330 113-563 103-446 (543)
68 TIGR03714 secA2 accessory Sec 99.8 7E-18 1.5E-22 199.4 31.3 388 114-542 68-529 (762)
69 KOG0345 ATP-dependent RNA heli 99.8 2.2E-18 4.7E-23 187.4 24.6 316 113-546 27-360 (567)
70 PRK09751 putative ATP-dependen 99.8 2.1E-18 4.5E-23 216.3 26.8 96 439-537 243-371 (1490)
71 COG4096 HsdR Type I site-speci 99.8 5.3E-19 1.1E-23 204.5 19.3 347 111-550 162-546 (875)
72 KOG0347 RNA helicase [RNA proc 99.8 1.5E-19 3.3E-24 199.0 12.7 387 114-606 203-639 (731)
73 PRK09401 reverse gyrase; Revie 99.8 8.7E-18 1.9E-22 210.0 29.8 293 112-538 78-432 (1176)
74 KOG0341 DEAD-box protein abstr 99.8 1.1E-18 2.5E-23 184.8 15.5 322 114-559 192-535 (610)
75 PRK09200 preprotein translocas 99.8 2.9E-17 6.2E-22 195.9 29.1 118 421-543 409-534 (790)
76 PRK12898 secA preprotein trans 99.8 8.8E-17 1.9E-21 188.1 31.4 130 422-561 455-592 (656)
77 KOG0339 ATP-dependent RNA heli 99.8 1.2E-17 2.7E-22 182.3 21.3 317 114-555 245-578 (731)
78 TIGR00963 secA preprotein tran 99.8 2.7E-17 5.8E-22 193.4 25.7 117 423-544 388-511 (745)
79 KOG0348 ATP-dependent RNA heli 99.8 2.4E-17 5.2E-22 181.3 23.5 362 114-565 159-565 (708)
80 KOG0343 RNA Helicase [RNA proc 99.8 1.9E-17 4E-22 182.7 22.6 331 113-566 90-435 (758)
81 PHA02653 RNA helicase NPH-II; 99.8 4.2E-17 9.1E-22 193.4 26.9 329 106-554 152-516 (675)
82 COG1200 RecG RecG-like helicas 99.8 8.4E-17 1.8E-21 184.5 27.3 298 113-538 261-579 (677)
83 TIGR03158 cas3_cyano CRISPR-as 99.8 1.4E-16 2.9E-21 178.2 27.8 85 439-535 271-357 (357)
84 KOG4284 DEAD box protein [Tran 99.8 2E-17 4.3E-22 184.8 18.2 321 114-550 47-378 (980)
85 COG1204 Superfamily II helicas 99.8 1.1E-16 2.5E-21 192.1 25.8 310 114-541 31-397 (766)
86 PRK05580 primosome assembly pr 99.7 6.4E-16 1.4E-20 185.6 31.0 358 112-551 142-550 (679)
87 COG4889 Predicted helicase [Ge 99.7 1.5E-17 3.2E-22 190.3 15.0 386 112-550 159-586 (1518)
88 TIGR01054 rgy reverse gyrase. 99.7 1.5E-16 3.3E-21 199.2 25.3 279 112-522 76-409 (1171)
89 COG1205 Distinct helicase fami 99.7 4.7E-16 1E-20 189.2 28.2 329 114-561 70-431 (851)
90 KOG0336 ATP-dependent RNA heli 99.7 4.5E-17 9.7E-22 173.9 16.4 315 114-552 242-572 (629)
91 PRK14701 reverse gyrase; Provi 99.7 6.1E-16 1.3E-20 197.5 27.7 298 112-540 77-446 (1638)
92 COG1202 Superfamily II helicas 99.7 3.4E-16 7.5E-21 173.5 21.9 316 113-552 215-553 (830)
93 KOG0326 ATP-dependent RNA heli 99.7 2.4E-17 5.3E-22 171.4 11.5 325 114-566 107-441 (459)
94 PF04851 ResIII: Type III rest 99.7 6.7E-17 1.5E-21 162.1 13.4 152 113-276 2-183 (184)
95 TIGR00595 priA primosomal prot 99.7 2.5E-15 5.4E-20 174.6 28.1 95 453-550 271-381 (505)
96 cd00079 HELICc Helicase superf 99.7 7.1E-17 1.5E-21 152.9 12.4 120 424-546 12-131 (131)
97 KOG0332 ATP-dependent RNA heli 99.7 3.4E-16 7.3E-21 166.2 17.7 312 114-550 112-441 (477)
98 COG4098 comFA Superfamily II D 99.7 3.7E-14 8E-19 149.7 32.0 315 110-553 93-417 (441)
99 TIGR01970 DEAH_box_HrpB ATP-de 99.7 1.4E-15 3E-20 184.5 24.1 107 440-552 209-336 (819)
100 PRK09694 helicase Cas3; Provis 99.7 1.2E-14 2.6E-19 176.5 30.2 336 112-540 284-665 (878)
101 KOG0351 ATP-dependent DNA heli 99.7 1.1E-15 2.4E-20 185.0 20.6 312 113-549 263-591 (941)
102 KOG0344 ATP-dependent RNA heli 99.7 5.2E-16 1.1E-20 173.8 15.3 315 114-551 158-494 (593)
103 KOG0334 RNA helicase [RNA proc 99.7 3.9E-15 8.5E-20 176.3 22.3 317 113-551 386-719 (997)
104 PRK11664 ATP-dependent RNA hel 99.7 4.6E-15 1E-19 180.3 23.3 108 439-552 211-339 (812)
105 KOG0346 RNA helicase [RNA proc 99.6 7.2E-15 1.6E-19 158.9 20.5 309 118-552 45-410 (569)
106 PRK13104 secA preprotein trans 99.6 3.5E-14 7.6E-19 169.5 27.2 393 112-546 80-583 (896)
107 PRK12906 secA preprotein trans 99.6 9.6E-14 2.1E-18 165.0 27.7 392 112-543 78-546 (796)
108 KOG0353 ATP-dependent DNA heli 99.6 2.8E-13 6.2E-18 143.6 26.2 316 113-549 93-466 (695)
109 smart00487 DEXDc DEAD-like hel 99.6 1.7E-14 3.6E-19 145.1 16.2 159 112-279 6-174 (201)
110 KOG0352 ATP-dependent DNA heli 99.6 1.5E-13 3.3E-18 148.0 23.6 324 116-548 22-360 (641)
111 COG1197 Mfd Transcription-repa 99.6 3.5E-13 7.7E-18 162.7 28.6 310 112-551 592-912 (1139)
112 PF00271 Helicase_C: Helicase 99.6 3.6E-15 7.8E-20 129.3 8.1 78 458-538 1-78 (78)
113 TIGR00631 uvrb excinuclease AB 99.6 6.4E-13 1.4E-17 158.3 28.9 125 423-553 425-554 (655)
114 PRK12904 preprotein translocas 99.6 1.1E-12 2.3E-17 156.7 29.9 391 112-546 79-569 (830)
115 PRK13107 preprotein translocas 99.6 1.2E-12 2.6E-17 156.1 29.9 397 112-546 80-587 (908)
116 KOG0952 DNA/RNA helicase MER3/ 99.6 3.7E-13 8.1E-18 158.5 25.0 334 114-565 110-517 (1230)
117 KOG0327 Translation initiation 99.6 4.2E-14 9.1E-19 151.8 15.2 314 114-553 48-371 (397)
118 PRK11131 ATP-dependent RNA hel 99.6 6.1E-13 1.3E-17 165.0 27.1 107 439-553 285-412 (1294)
119 cd00046 DEXDc DEAD-like helica 99.5 5.1E-14 1.1E-18 133.3 13.3 136 135-275 2-144 (144)
120 PRK05298 excinuclease ABC subu 99.5 2.1E-11 4.5E-16 146.2 37.8 124 423-552 429-557 (652)
121 TIGR01967 DEAH_box_HrpA ATP-de 99.5 1.2E-12 2.6E-17 163.0 22.9 108 439-554 278-406 (1283)
122 PRK12900 secA preprotein trans 99.5 3.3E-12 7.2E-17 152.9 24.1 116 423-543 581-704 (1025)
123 KOG0337 ATP-dependent RNA heli 99.5 2.8E-13 6.2E-18 146.1 13.3 316 114-553 43-369 (529)
124 smart00490 HELICc helicase sup 99.5 2.1E-13 4.5E-18 118.0 8.6 81 455-538 2-82 (82)
125 COG0556 UvrB Helicase subunit 99.4 3.3E-11 7.2E-16 134.0 26.4 127 433-563 439-570 (663)
126 COG1203 CRISPR-associated heli 99.4 1E-11 2.2E-16 150.9 24.4 346 113-568 194-568 (733)
127 KOG0951 RNA helicase BRR2, DEA 99.4 4.6E-12 1E-16 151.0 19.5 300 114-538 309-688 (1674)
128 PF00270 DEAD: DEAD/DEAH box h 99.4 2.2E-12 4.9E-17 127.9 14.3 157 117-282 2-168 (169)
129 cd00268 DEADc DEAD-box helicas 99.4 4.4E-12 9.5E-17 130.2 15.9 155 114-276 21-185 (203)
130 PRK12326 preprotein translocas 99.4 2.6E-10 5.7E-15 133.4 30.7 388 111-546 75-543 (764)
131 PRK12899 secA preprotein trans 99.4 1.6E-10 3.6E-15 138.3 29.2 120 422-546 550-677 (970)
132 KOG0947 Cytoplasmic exosomal R 99.3 1.8E-10 3.8E-15 134.9 20.0 361 107-552 290-723 (1248)
133 PF11496 HDA2-3: Class II hist 99.3 1.1E-10 2.3E-15 126.4 16.6 208 353-561 4-254 (297)
134 TIGR01407 dinG_rel DnaQ family 99.2 1.2E-09 2.7E-14 135.3 26.7 88 429-522 662-756 (850)
135 PRK13103 secA preprotein trans 99.2 5E-09 1.1E-13 125.7 28.2 396 112-546 80-587 (913)
136 PRK12903 secA preprotein trans 99.2 1.4E-08 3.1E-13 120.7 28.9 119 422-546 408-535 (925)
137 COG1110 Reverse gyrase [DNA re 99.1 1.5E-08 3.2E-13 120.5 28.1 323 111-521 79-416 (1187)
138 COG4581 Superfamily II RNA hel 99.1 1.4E-09 3.1E-14 131.9 18.3 158 110-307 115-282 (1041)
139 COG0610 Type I site-specific r 99.1 4.2E-09 9.2E-14 130.8 21.9 142 132-281 272-419 (962)
140 PF14619 SnAC: Snf2-ATP coupli 99.0 5.5E-11 1.2E-15 101.8 1.5 61 637-698 14-74 (74)
141 KOG0948 Nuclear exosomal RNA h 99.0 5.1E-09 1.1E-13 120.2 15.1 358 113-557 128-543 (1041)
142 COG1198 PriA Primosomal protei 99.0 1.2E-07 2.6E-12 113.1 26.5 155 113-276 197-360 (730)
143 KOG0329 ATP-dependent RNA heli 99.0 8.2E-09 1.8E-13 105.4 13.9 127 114-250 64-198 (387)
144 TIGR00604 rad3 DNA repair heli 98.9 1.3E-07 2.8E-12 115.2 24.8 75 111-185 7-82 (705)
145 PF13872 AAA_34: P-loop contai 98.9 3.5E-08 7.6E-13 105.5 14.6 234 110-371 33-302 (303)
146 CHL00122 secA preprotein trans 98.9 1E-06 2.2E-11 105.7 28.4 349 112-509 74-490 (870)
147 PRK12901 secA preprotein trans 98.8 5.4E-07 1.2E-11 108.9 25.7 120 422-546 610-737 (1112)
148 TIGR00596 rad1 DNA repair prot 98.8 1E-07 2.2E-12 115.8 19.4 75 215-290 7-89 (814)
149 KOG0949 Predicted helicase, DE 98.8 1.1E-07 2.4E-12 112.2 17.6 163 113-288 510-682 (1330)
150 KOG0950 DNA polymerase theta/e 98.8 9.4E-08 2E-12 113.3 16.6 152 114-278 223-390 (1008)
151 PRK08074 bifunctional ATP-depe 98.8 3E-06 6.5E-11 106.1 29.6 93 427-522 738-835 (928)
152 PRK07246 bifunctional ATP-depe 98.7 5.1E-06 1.1E-10 102.4 29.1 89 428-522 635-725 (820)
153 COG1199 DinG Rad3-related DNA 98.7 3.7E-06 8.1E-11 102.0 26.5 101 438-543 477-610 (654)
154 TIGR03117 cas_csf4 CRISPR-asso 98.7 7.6E-06 1.6E-10 97.1 27.8 68 119-187 2-70 (636)
155 PRK12902 secA preprotein trans 98.7 1.4E-05 3E-10 96.1 29.9 351 112-509 83-505 (939)
156 COG1643 HrpA HrpA-like helicas 98.6 1.7E-06 3.6E-11 105.0 21.0 110 440-555 259-390 (845)
157 PRK15483 type III restriction- 98.5 1.2E-06 2.6E-11 106.7 15.5 169 134-310 60-277 (986)
158 KOG0920 ATP-dependent RNA heli 98.5 9.3E-06 2E-10 98.4 22.3 127 424-556 395-548 (924)
159 KOG1513 Nuclear helicase MOP-3 98.5 3.3E-06 7.2E-11 97.9 17.2 90 484-576 851-948 (1300)
160 KOG0922 DEAH-box RNA helicase 98.5 2.8E-05 6.1E-10 90.0 23.9 111 441-554 259-392 (674)
161 PF02399 Herpes_ori_bp: Origin 98.4 9.1E-06 2E-10 96.8 18.5 111 425-546 268-384 (824)
162 PRK11747 dinG ATP-dependent DN 98.4 7.7E-05 1.7E-09 90.8 27.0 89 427-522 521-616 (697)
163 PF13871 Helicase_C_4: Helicas 98.4 1.5E-06 3.2E-11 92.8 9.7 94 481-577 52-153 (278)
164 PF07652 Flavi_DEAD: Flaviviru 98.3 2.3E-06 5E-11 82.1 9.6 128 133-276 4-137 (148)
165 KOG0349 Putative DEAD-box RNA 98.3 1.2E-06 2.6E-11 95.5 8.0 95 440-537 505-602 (725)
166 KOG0924 mRNA splicing factor A 98.3 7.1E-05 1.5E-09 86.1 21.2 93 464-559 597-704 (1042)
167 smart00488 DEXDc2 DEAD-like he 98.2 1.7E-05 3.7E-10 86.4 14.9 74 113-186 7-84 (289)
168 smart00489 DEXDc3 DEAD-like he 98.2 1.7E-05 3.7E-10 86.4 14.9 74 113-186 7-84 (289)
169 KOG0923 mRNA splicing factor A 98.1 0.00038 8.2E-09 80.3 21.8 107 440-554 473-608 (902)
170 KOG0926 DEAH-box RNA helicase 98.1 5.9E-05 1.3E-09 88.2 15.0 79 467-551 607-703 (1172)
171 PF13086 AAA_11: AAA domain; P 98.1 2E-05 4.4E-10 81.8 10.5 68 114-185 1-75 (236)
172 COG0653 SecA Preprotein transl 98.1 0.00091 2E-08 80.6 25.2 123 421-549 410-543 (822)
173 TIGR02562 cas3_yersinia CRISPR 98.0 0.0065 1.4E-07 74.9 31.2 47 493-542 838-884 (1110)
174 KOG0953 Mitochondrial RNA heli 97.9 4.9E-05 1.1E-09 85.9 10.8 107 438-548 356-473 (700)
175 KOG4150 Predicted ATP-dependen 97.8 0.00024 5.2E-09 80.3 13.7 131 422-557 507-645 (1034)
176 COG3587 Restriction endonuclea 97.6 0.00028 6E-09 83.7 11.3 137 130-275 71-242 (985)
177 PRK10536 hypothetical protein; 97.5 0.00068 1.5E-08 71.8 10.4 145 114-280 59-217 (262)
178 PF02562 PhoH: PhoH-like prote 97.5 0.00051 1.1E-08 70.7 9.2 148 115-281 5-161 (205)
179 KOG1802 RNA helicase nonsense 97.4 0.0011 2.4E-08 76.6 12.5 148 113-274 409-601 (935)
180 KOG0925 mRNA splicing factor A 97.3 0.0089 1.9E-07 67.2 17.1 60 495-556 315-391 (699)
181 PF07517 SecA_DEAD: SecA DEAD- 97.2 0.0021 4.6E-08 68.9 10.7 121 111-249 74-209 (266)
182 KOG1803 DNA helicase [Replicat 97.1 0.0029 6.2E-08 73.1 11.4 65 112-182 183-248 (649)
183 PF13401 AAA_22: AAA domain; P 97.1 0.0019 4.1E-08 61.0 7.9 115 133-275 4-125 (131)
184 PRK14873 primosome assembly pr 97.0 0.0037 8E-08 75.4 11.9 127 142-276 169-304 (665)
185 KOG0951 RNA helicase BRR2, DEA 97.0 0.038 8.2E-07 68.5 19.9 109 129-252 1155-1268(1674)
186 TIGR00376 DNA helicase, putati 96.8 0.012 2.5E-07 71.2 13.8 69 112-186 155-224 (637)
187 PF12340 DUF3638: Protein of u 96.8 0.0098 2.1E-07 62.0 11.3 73 112-187 21-93 (229)
188 PF13307 Helicase_C_2: Helicas 96.8 0.0043 9.2E-08 62.1 8.2 78 438-522 7-92 (167)
189 PF09848 DUF2075: Uncharacteri 96.8 0.0036 7.7E-08 70.3 8.3 89 137-251 5-97 (352)
190 PF13604 AAA_30: AAA domain; P 96.7 0.018 3.9E-07 59.2 12.5 125 114-277 1-132 (196)
191 cd00009 AAA The AAA+ (ATPases 96.5 0.038 8.2E-07 52.1 12.2 39 133-174 19-57 (151)
192 KOG1131 RNA polymerase II tran 96.4 0.027 5.9E-07 63.9 11.5 68 105-172 7-74 (755)
193 KOG1132 Helicase of the DEAD s 96.2 0.022 4.7E-07 68.5 10.6 39 113-151 20-58 (945)
194 COG0553 HepA Superfamily II DN 96.1 0.0037 8.1E-08 78.2 3.6 180 113-297 83-289 (866)
195 TIGR01447 recD exodeoxyribonuc 96.0 0.034 7.4E-07 66.4 11.1 139 117-277 148-297 (586)
196 PRK14956 DNA polymerase III su 95.9 0.056 1.2E-06 62.5 11.5 43 118-160 22-67 (484)
197 PRK07003 DNA polymerase III su 95.7 0.085 1.8E-06 63.8 12.5 142 119-284 21-167 (830)
198 PRK04296 thymidine kinase; Pro 95.7 0.045 9.8E-07 55.9 9.1 34 136-172 5-38 (190)
199 TIGR01448 recD_rel helicase, p 95.7 0.082 1.8E-06 64.9 12.8 135 112-278 321-455 (720)
200 TIGR02881 spore_V_K stage V sp 95.7 0.042 9E-07 59.0 9.0 27 134-160 43-69 (261)
201 smart00382 AAA ATPases associa 95.7 0.061 1.3E-06 50.0 9.2 42 134-178 3-44 (148)
202 PRK12723 flagellar biosynthesi 95.5 0.19 4.1E-06 57.1 13.9 129 136-291 177-313 (388)
203 KOG1805 DNA replication helica 95.4 0.074 1.6E-06 64.7 10.2 148 114-277 669-831 (1100)
204 PRK09112 DNA polymerase III su 95.3 0.2 4.3E-06 56.3 13.0 144 119-275 28-181 (351)
205 PRK10875 recD exonuclease V su 95.2 0.086 1.9E-06 63.3 10.3 141 115-277 153-303 (615)
206 COG3421 Uncharacterized protei 95.0 0.026 5.5E-07 65.2 4.8 107 139-249 3-124 (812)
207 PRK14949 DNA polymerase III su 95.0 0.13 2.7E-06 63.5 10.8 42 236-277 118-160 (944)
208 PRK12323 DNA polymerase III su 95.0 0.26 5.5E-06 59.0 13.1 25 135-159 39-64 (700)
209 PLN03025 replication factor C 94.9 0.2 4.3E-06 55.5 11.5 49 237-285 99-148 (319)
210 PRK11773 uvrD DNA-dependent he 94.8 2.7 5.9E-05 51.9 22.2 54 114-173 9-63 (721)
211 PRK06526 transposase; Provisio 94.7 0.11 2.4E-06 55.6 8.6 101 132-275 97-201 (254)
212 PRK14960 DNA polymerase III su 94.6 0.34 7.4E-06 58.0 12.7 40 120-159 21-63 (702)
213 COG1875 NYN ribonuclease and A 94.5 0.15 3.3E-06 56.2 8.8 64 109-174 222-286 (436)
214 PRK08181 transposase; Validate 94.5 0.34 7.4E-06 52.3 11.6 47 114-160 87-133 (269)
215 PF00448 SRP54: SRP54-type pro 94.5 0.48 1E-05 48.7 12.2 130 137-290 5-140 (196)
216 PRK07764 DNA polymerase III su 94.4 0.47 1E-05 58.9 14.1 113 137-274 41-158 (824)
217 CHL00181 cbbX CbbX; Provisiona 94.4 0.13 2.8E-06 56.2 8.2 28 133-160 59-86 (287)
218 PRK12402 replication factor C 94.4 0.15 3.3E-06 56.4 9.0 39 121-159 22-62 (337)
219 PF13177 DNA_pol3_delta2: DNA 94.3 0.66 1.4E-05 46.1 12.5 138 119-282 2-148 (162)
220 PRK07994 DNA polymerase III su 94.3 0.44 9.6E-06 57.4 13.2 133 119-277 21-160 (647)
221 TIGR03015 pepcterm_ATPase puta 94.2 0.59 1.3E-05 50.0 12.8 41 116-156 25-66 (269)
222 TIGR01073 pcrA ATP-dependent D 94.2 3.9 8.4E-05 50.7 21.4 54 114-173 4-58 (726)
223 TIGR02880 cbbX_cfxQ probable R 94.1 0.15 3.2E-06 55.6 7.9 39 133-171 58-97 (284)
224 PRK14958 DNA polymerase III su 94.0 0.44 9.6E-06 56.2 12.2 42 119-160 21-65 (509)
225 PRK06835 DNA replication prote 93.9 0.78 1.7E-05 51.1 13.3 49 112-160 158-210 (329)
226 PRK05707 DNA polymerase III su 93.7 0.67 1.4E-05 51.6 12.3 137 114-275 3-145 (328)
227 PRK05703 flhF flagellar biosyn 93.6 0.78 1.7E-05 52.9 13.0 128 136-292 224-359 (424)
228 PRK11889 flhF flagellar biosyn 93.5 1.4 3.1E-05 49.9 14.3 123 137-290 245-377 (436)
229 TIGR02928 orc1/cdc6 family rep 93.5 0.87 1.9E-05 51.1 13.1 46 115-160 19-67 (365)
230 PRK14961 DNA polymerase III su 93.4 0.93 2E-05 51.2 13.1 42 118-159 20-64 (363)
231 smart00492 HELICc3 helicase su 93.4 0.5 1.1E-05 46.0 9.4 53 467-522 25-79 (141)
232 PF06862 DUF1253: Protein of u 93.3 1.1 2.3E-05 51.6 13.2 127 423-551 280-414 (442)
233 KOG0989 Replication factor C, 93.2 0.26 5.6E-06 53.3 7.5 42 118-159 40-83 (346)
234 PRK07952 DNA replication prote 93.1 1.2 2.6E-05 47.4 12.5 62 117-185 79-144 (244)
235 TIGR02639 ClpA ATP-dependent C 93.0 26 0.00057 43.5 25.9 27 133-159 203-229 (731)
236 TIGR03420 DnaA_homol_Hda DnaA 93.0 0.55 1.2E-05 48.8 9.8 27 133-159 38-64 (226)
237 PF13245 AAA_19: Part of AAA d 93.0 0.34 7.4E-06 41.8 6.7 41 135-176 12-54 (76)
238 PRK14952 DNA polymerase III su 93.0 0.71 1.5E-05 55.2 11.6 42 119-160 18-62 (584)
239 PHA02544 44 clamp loader, smal 92.7 0.9 2E-05 49.9 11.5 40 237-276 100-141 (316)
240 PRK08058 DNA polymerase III su 92.7 1.2 2.7E-05 49.5 12.5 131 118-274 10-148 (329)
241 PRK07940 DNA polymerase III su 92.7 1.1 2.3E-05 51.2 12.1 24 137-160 40-63 (394)
242 PF13173 AAA_14: AAA domain 92.6 0.86 1.9E-05 43.2 9.6 39 237-276 61-99 (128)
243 PRK14951 DNA polymerase III su 92.6 0.79 1.7E-05 55.1 11.4 42 119-160 21-65 (618)
244 smart00491 HELICc2 helicase su 92.5 0.53 1.2E-05 45.8 8.1 54 468-522 23-80 (142)
245 PRK08116 hypothetical protein; 92.4 1.1 2.5E-05 48.3 11.5 35 134-171 115-149 (268)
246 PRK09111 DNA polymerase III su 92.4 1.1 2.3E-05 54.0 12.2 42 119-160 29-73 (598)
247 PRK07471 DNA polymerase III su 92.4 1.3 2.9E-05 49.9 12.4 142 119-275 24-181 (365)
248 PRK14957 DNA polymerase III su 92.3 1.6 3.5E-05 51.8 13.3 23 137-159 42-64 (546)
249 PRK07993 DNA polymerase III su 92.2 1.4 3E-05 49.2 12.1 147 114-284 2-156 (334)
250 PRK08451 DNA polymerase III su 92.1 1.1 2.5E-05 52.8 11.7 114 137-275 40-156 (535)
251 PRK14974 cell division protein 92.1 2.1 4.5E-05 47.8 13.2 115 136-277 143-266 (336)
252 PF05621 TniB: Bacterial TniB 92.0 1.3 2.8E-05 48.3 11.0 46 230-275 138-189 (302)
253 PRK14963 DNA polymerase III su 91.8 1.3 2.9E-05 52.1 11.9 42 119-160 19-63 (504)
254 PRK14962 DNA polymerase III su 91.8 0.89 1.9E-05 53.1 10.4 23 137-159 40-62 (472)
255 PRK06090 DNA polymerase III su 91.8 2.2 4.8E-05 47.2 12.9 147 114-285 3-157 (319)
256 PRK06871 DNA polymerase III su 91.7 1.8 3.9E-05 48.0 12.2 143 115-284 3-155 (325)
257 PRK06645 DNA polymerase III su 91.7 1.5 3.3E-05 51.5 12.2 42 119-160 26-70 (507)
258 PRK08084 DNA replication initi 91.6 1.1 2.4E-05 47.3 10.1 26 134-159 46-71 (235)
259 PRK14964 DNA polymerase III su 91.5 3.3 7.2E-05 48.5 14.5 116 136-276 38-156 (491)
260 PRK14959 DNA polymerase III su 91.3 1.4 3E-05 52.9 11.3 23 137-159 42-64 (624)
261 PRK05580 primosome assembly pr 91.3 2.3 4.9E-05 52.2 13.6 95 422-520 172-267 (679)
262 PTZ00112 origin recognition co 91.2 2.6 5.7E-05 52.1 13.4 46 114-159 758-807 (1164)
263 KOG0991 Replication factor C, 91.2 0.29 6.4E-06 50.8 4.8 29 131-159 46-74 (333)
264 PRK08769 DNA polymerase III su 91.1 2.8 6E-05 46.5 12.8 151 114-285 4-162 (319)
265 PRK06921 hypothetical protein; 90.9 1.6 3.5E-05 47.0 10.6 28 133-160 117-144 (266)
266 PRK08691 DNA polymerase III su 90.9 1.9 4.2E-05 52.2 12.1 42 119-160 21-65 (709)
267 PRK14969 DNA polymerase III su 90.9 1.9 4.2E-05 51.1 12.1 41 119-159 21-64 (527)
268 COG0470 HolB ATPase involved i 90.7 1.8 3.8E-05 47.5 10.9 116 136-274 27-147 (325)
269 PF00004 AAA: ATPase family as 90.6 0.89 1.9E-05 42.4 7.4 34 137-176 2-35 (132)
270 PRK08903 DnaA regulatory inact 90.3 1.9 4.1E-05 45.0 10.3 27 133-159 42-68 (227)
271 PRK10917 ATP-dependent DNA hel 90.1 3.3 7.1E-05 50.9 13.5 96 422-520 292-392 (681)
272 PRK05563 DNA polymerase III su 90.0 3.3 7.1E-05 49.6 13.1 24 137-160 42-65 (559)
273 PRK14948 DNA polymerase III su 89.9 2.1 4.6E-05 51.7 11.4 42 119-160 21-65 (620)
274 cd01124 KaiC KaiC is a circadi 89.8 2.7 5.9E-05 42.0 10.6 48 136-186 2-49 (187)
275 PF06733 DEAD_2: DEAD_2; Inte 89.6 0.24 5.2E-06 49.7 2.7 38 214-251 118-159 (174)
276 PRK06647 DNA polymerase III su 89.5 2.4 5.1E-05 50.8 11.3 24 137-160 42-65 (563)
277 PRK14955 DNA polymerase III su 89.4 6.8 0.00015 44.8 14.6 42 119-160 21-65 (397)
278 PF00580 UvrD-helicase: UvrD/R 89.4 0.6 1.3E-05 50.6 5.9 55 115-175 1-56 (315)
279 PRK14965 DNA polymerase III su 89.4 2.4 5.3E-05 50.9 11.4 131 119-274 21-157 (576)
280 COG3267 ExeA Type II secretory 89.3 2.5 5.4E-05 44.9 9.9 46 136-185 54-105 (269)
281 PHA02533 17 large terminase pr 89.3 1.2 2.7E-05 52.7 8.7 56 113-173 58-113 (534)
282 PRK14722 flhF flagellar biosyn 89.1 3.7 8E-05 46.4 11.9 123 133-284 137-266 (374)
283 PRK00440 rfc replication facto 89.1 5 0.00011 43.9 12.9 38 237-274 102-140 (319)
284 PRK14953 DNA polymerase III su 89.0 3.9 8.5E-05 48.0 12.5 41 119-159 21-64 (486)
285 PF05876 Terminase_GpA: Phage 88.9 0.25 5.5E-06 58.8 2.7 164 113-287 15-191 (557)
286 PRK05642 DNA replication initi 88.9 3.6 7.9E-05 43.4 11.1 37 238-274 98-138 (234)
287 PRK14950 DNA polymerase III su 88.8 3.4 7.3E-05 49.8 12.1 42 118-159 20-64 (585)
288 TIGR02768 TraA_Ti Ti-type conj 88.8 2.6 5.7E-05 52.2 11.3 128 112-277 350-478 (744)
289 cd01120 RecA-like_NTPases RecA 88.8 4.2 9.2E-05 39.0 10.8 34 137-173 3-36 (165)
290 PRK08727 hypothetical protein; 88.7 1.9 4.1E-05 45.5 8.8 25 136-160 44-68 (233)
291 PRK04195 replication factor C 88.3 3.7 8E-05 48.2 11.8 25 133-157 39-63 (482)
292 cd01121 Sms Sms (bacterial rad 88.2 3.7 8.1E-05 46.5 11.3 62 121-185 69-131 (372)
293 PRK00411 cdc6 cell division co 88.2 7.2 0.00016 44.2 13.8 45 116-160 35-82 (394)
294 PRK06964 DNA polymerase III su 88.2 4.6 0.0001 45.2 11.8 47 115-161 2-49 (342)
295 PRK00149 dnaA chromosomal repl 88.1 3.7 8.1E-05 47.7 11.6 25 136-160 151-175 (450)
296 TIGR00362 DnaA chromosomal rep 88.1 4 8.6E-05 46.8 11.7 25 136-160 139-163 (405)
297 PRK06731 flhF flagellar biosyn 88.1 13 0.00027 40.4 14.7 126 134-290 76-211 (270)
298 PRK14954 DNA polymerase III su 88.0 5.1 0.00011 48.4 12.8 42 119-160 21-65 (620)
299 PRK14087 dnaA chromosomal repl 88.0 4.1 8.8E-05 47.5 11.7 25 136-160 144-168 (450)
300 TIGR00595 priA primosomal prot 87.9 3.4 7.3E-05 48.8 11.1 95 421-519 6-101 (505)
301 KOG0952 DNA/RNA helicase MER3/ 87.6 0.42 9.1E-06 58.9 3.3 110 131-252 941-1061(1230)
302 TIGR00678 holB DNA polymerase 87.4 13 0.00028 37.5 13.8 25 136-160 17-41 (188)
303 PRK05896 DNA polymerase III su 87.1 6.5 0.00014 47.1 12.7 42 119-160 21-65 (605)
304 PRK14088 dnaA chromosomal repl 87.0 4.8 0.0001 46.7 11.5 26 135-160 132-157 (440)
305 PRK00080 ruvB Holliday junctio 86.7 14 0.0003 41.0 14.7 44 114-157 28-75 (328)
306 PRK07133 DNA polymerase III su 86.7 2.8 6.2E-05 51.1 9.6 24 137-160 44-67 (725)
307 PRK06893 DNA replication initi 86.5 5.2 0.00011 42.1 10.5 25 136-160 42-66 (229)
308 PRK12724 flagellar biosynthesi 86.4 7.6 0.00016 44.6 12.3 59 233-291 295-360 (432)
309 PRK04132 replication factor C 86.4 2.8 6.1E-05 52.1 9.6 49 237-285 630-679 (846)
310 PRK12377 putative replication 86.3 6.2 0.00013 42.1 11.0 27 134-160 102-128 (248)
311 PHA03333 putative ATPase subun 86.3 4.7 0.0001 48.6 10.8 140 116-276 171-332 (752)
312 PHA03368 DNA packaging termina 85.9 2.2 4.9E-05 51.0 7.9 145 135-292 256-418 (738)
313 PRK00771 signal recognition pa 85.8 8.6 0.00019 44.5 12.6 25 136-160 98-122 (437)
314 PF02456 Adeno_IVa2: Adenoviru 85.8 1.9 4.1E-05 46.8 6.7 98 133-249 87-208 (369)
315 TIGR03345 VI_ClpV1 type VI sec 85.4 4.6 0.0001 50.8 10.9 40 119-158 192-233 (852)
316 PRK12727 flagellar biosynthesi 85.2 15 0.00032 43.5 14.1 25 136-160 353-377 (559)
317 PF05496 RuvB_N: Holliday junc 85.2 1.8 3.9E-05 45.3 6.1 20 135-154 52-71 (233)
318 PRK06305 DNA polymerase III su 85.0 8.7 0.00019 44.8 12.3 42 119-160 22-66 (451)
319 PRK09183 transposase/IS protei 84.7 5.4 0.00012 42.8 9.8 29 131-159 100-128 (259)
320 PF13481 AAA_25: AAA domain; P 84.7 7.6 0.00017 39.1 10.4 55 133-187 32-93 (193)
321 PRK08699 DNA polymerase III su 83.9 11 0.00024 41.9 12.1 46 115-160 2-48 (325)
322 PF00308 Bac_DnaA: Bacterial d 83.7 15 0.00033 38.3 12.4 37 237-273 97-137 (219)
323 PRK14086 dnaA chromosomal repl 83.6 8.6 0.00019 46.2 11.5 24 136-159 317-340 (617)
324 TIGR02397 dnaX_nterm DNA polym 83.5 6.3 0.00014 43.9 10.1 23 137-159 40-62 (355)
325 PRK13342 recombination factor 83.2 8.1 0.00017 44.4 11.0 21 135-155 38-58 (413)
326 TIGR03689 pup_AAA proteasome A 82.8 7.6 0.00017 45.8 10.6 28 6-33 14-41 (512)
327 cd00561 CobA_CobO_BtuR ATP:cor 82.8 34 0.00074 34.0 13.7 135 137-290 6-149 (159)
328 COG2256 MGS1 ATPase related to 82.8 7.1 0.00015 44.1 9.7 20 135-154 50-69 (436)
329 KOG2543 Origin recognition com 82.5 23 0.0005 39.9 13.4 141 112-278 7-161 (438)
330 PRK13889 conjugal transfer rel 82.4 9.7 0.00021 48.5 11.9 129 112-278 344-473 (988)
331 TIGR01075 uvrD DNA helicase II 82.2 5.4 0.00012 49.3 9.6 68 114-187 4-73 (715)
332 PTZ00293 thymidine kinase; Pro 81.9 15 0.00032 38.3 11.2 34 137-173 8-41 (211)
333 PRK06904 replicative DNA helic 81.9 32 0.00069 40.4 15.3 126 122-250 210-347 (472)
334 PRK10416 signal recognition pa 81.9 32 0.00069 38.2 14.6 32 137-171 118-149 (318)
335 PHA03372 DNA packaging termina 81.6 2 4.3E-05 50.8 5.2 127 136-274 205-336 (668)
336 PRK12422 chromosomal replicati 81.6 6.7 0.00014 45.6 9.5 33 136-171 144-176 (445)
337 TIGR01425 SRP54_euk signal rec 81.5 37 0.0008 39.2 15.2 24 137-160 104-127 (429)
338 PF01443 Viral_helicase1: Vira 81.5 1.7 3.6E-05 45.3 4.2 41 237-280 62-102 (234)
339 TIGR00643 recG ATP-dependent D 81.4 6.8 0.00015 47.7 9.9 97 422-520 266-366 (630)
340 cd03115 SRP The signal recogni 81.4 47 0.001 32.8 14.5 25 136-160 3-27 (173)
341 COG1484 DnaC DNA replication p 81.2 8.7 0.00019 41.2 9.6 67 114-183 86-152 (254)
342 TIGR02688 conserved hypothetic 81.2 5.2 0.00011 45.9 8.1 40 117-156 193-232 (449)
343 COG1198 PriA Primosomal protei 81.2 5.6 0.00012 48.7 9.0 110 357-502 195-305 (730)
344 PRK13894 conjugal transfer ATP 80.9 21 0.00046 39.6 12.8 131 113-285 131-261 (319)
345 PHA02244 ATPase-like protein 80.8 18 0.0004 40.8 12.2 37 129-171 115-151 (383)
346 TIGR01074 rep ATP-dependent DN 80.7 7.3 0.00016 47.6 10.0 67 115-187 2-70 (664)
347 CHL00095 clpC Clp protease ATP 80.7 6.7 0.00014 49.3 9.8 26 133-158 200-225 (821)
348 TIGR00708 cobA cob(I)alamin ad 80.7 6.6 0.00014 39.6 7.9 58 230-290 90-151 (173)
349 TIGR03346 chaperone_ClpB ATP-d 80.6 7.7 0.00017 49.0 10.3 40 119-158 178-219 (852)
350 COG1419 FlhF Flagellar GTP-bin 80.3 68 0.0015 36.6 16.4 135 133-293 203-341 (407)
351 COG3973 Superfamily I DNA and 79.9 4.8 0.0001 47.5 7.3 46 136-181 229-277 (747)
352 PRK14873 primosome assembly pr 79.9 8.4 0.00018 47.0 9.9 79 422-503 170-250 (665)
353 COG1474 CDC6 Cdc6-related prot 79.8 16 0.00034 41.4 11.5 49 113-161 19-70 (366)
354 PRK05986 cob(I)alamin adenolsy 79.7 14 0.0003 37.9 9.9 141 133-290 22-169 (191)
355 PRK07276 DNA polymerase III su 79.5 29 0.00063 38.0 13.0 145 114-285 2-153 (290)
356 PRK07399 DNA polymerase III su 79.4 10 0.00022 42.1 9.6 42 119-160 9-53 (314)
357 PF00265 TK: Thymidine kinase; 78.8 3.5 7.6E-05 41.6 5.3 34 137-173 5-38 (176)
358 COG1435 Tdk Thymidine kinase [ 78.7 14 0.00031 37.8 9.5 108 137-274 8-118 (201)
359 PRK10867 signal recognition pa 78.4 24 0.00051 40.9 12.5 35 137-172 104-138 (433)
360 cd01125 repA Hexameric Replica 78.3 16 0.00035 38.5 10.5 39 135-173 3-50 (239)
361 PRK11823 DNA repair protein Ra 78.3 9.9 0.00021 44.2 9.5 63 121-186 67-130 (446)
362 PRK10865 protein disaggregatio 78.1 8.8 0.00019 48.4 9.7 37 122-158 186-224 (857)
363 PRK11054 helD DNA helicase IV; 78.0 5.3 0.00012 48.9 7.5 64 113-182 195-259 (684)
364 KOG1133 Helicase of the DEAD s 78.0 4.3 9.3E-05 48.5 6.3 50 111-160 12-62 (821)
365 COG2255 RuvB Holliday junction 77.9 9.8 0.00021 41.2 8.4 22 133-154 52-73 (332)
366 cd01122 GP4d_helicase GP4d_hel 77.7 16 0.00034 39.2 10.3 50 132-183 29-78 (271)
367 PRK06995 flhF flagellar biosyn 77.6 15 0.00032 43.1 10.6 25 137-161 260-284 (484)
368 PRK10263 DNA translocase FtsK; 77.5 8.9 0.00019 49.4 9.3 41 134-174 1011-1052(1355)
369 KOG0921 Dosage compensation co 77.5 20 0.00043 44.3 11.6 137 128-275 388-535 (1282)
370 TIGR00959 ffh signal recogniti 77.3 23 0.00049 41.0 11.9 36 136-172 102-137 (428)
371 PRK05564 DNA polymerase III su 77.3 13 0.00029 40.8 9.9 23 137-159 30-52 (313)
372 TIGR03499 FlhF flagellar biosy 77.2 12 0.00027 40.6 9.4 25 136-160 197-221 (282)
373 CHL00206 ycf2 Ycf2; Provisiona 77.2 7 0.00015 52.2 8.4 41 133-179 1630-1670(2281)
374 PRK08533 flagellar accessory p 76.9 16 0.00035 38.4 9.9 48 133-183 24-71 (230)
375 PF01695 IstB_IS21: IstB-like 76.7 4 8.8E-05 41.2 5.1 49 130-185 44-92 (178)
376 PRK11034 clpA ATP-dependent Cl 76.6 11 0.00024 46.7 9.8 27 133-159 207-233 (758)
377 TIGR00064 ftsY signal recognit 76.5 38 0.00082 36.7 12.8 32 137-171 76-107 (272)
378 TIGR02640 gas_vesic_GvpN gas v 76.4 6.9 0.00015 42.0 7.1 49 117-171 5-53 (262)
379 COG0593 DnaA ATPase involved i 76.1 32 0.0007 39.4 12.5 51 237-287 175-233 (408)
380 PRK13826 Dtr system oriT relax 76.0 18 0.0004 46.5 11.6 130 112-279 379-509 (1102)
381 COG1702 PhoH Phosphate starvat 75.6 9.7 0.00021 42.2 7.9 43 237-281 243-285 (348)
382 TIGR03880 KaiC_arch_3 KaiC dom 75.6 35 0.00075 35.4 12.0 49 136-187 19-67 (224)
383 PRK03992 proteasome-activating 75.2 13 0.00028 42.4 9.3 24 133-156 165-188 (389)
384 cd01128 rho_factor Transcripti 75.1 5.9 0.00013 42.3 6.1 19 132-150 15-33 (249)
385 PF06564 YhjQ: YhjQ protein; 75.1 8.1 0.00018 41.1 7.0 96 139-247 8-127 (243)
386 PRK10689 transcription-repair 75.0 27 0.00058 45.5 12.9 95 422-518 631-729 (1147)
387 COG0552 FtsY Signal recognitio 74.7 21 0.00045 39.6 10.1 123 137-282 143-276 (340)
388 PRK08760 replicative DNA helic 74.3 38 0.00083 39.8 13.0 125 123-250 219-352 (476)
389 PRK06067 flagellar accessory p 74.2 21 0.00046 37.4 10.0 48 136-186 28-75 (234)
390 PRK13849 putative crown gall t 74.2 23 0.00049 37.4 10.2 38 142-182 11-50 (231)
391 PF03354 Terminase_1: Phage Te 73.9 12 0.00026 43.9 8.8 57 117-173 1-63 (477)
392 PRK14971 DNA polymerase III su 73.7 54 0.0012 39.9 14.4 39 237-275 121-160 (614)
393 CHL00095 clpC Clp protease ATP 73.7 1.2E+02 0.0027 38.2 18.1 23 137-159 543-565 (821)
394 PRK12726 flagellar biosynthesi 73.6 61 0.0013 37.0 13.7 43 137-182 210-256 (407)
395 KOG0780 Signal recognition par 73.6 15 0.00033 41.3 8.7 98 137-257 105-203 (483)
396 PRK14721 flhF flagellar biosyn 73.4 34 0.00073 39.5 12.0 54 237-291 269-327 (420)
397 PRK05748 replicative DNA helic 73.4 44 0.00095 38.9 13.2 127 121-250 191-327 (448)
398 cd00984 DnaB_C DnaB helicase C 73.2 78 0.0017 33.0 14.1 40 133-174 13-52 (242)
399 TIGR03877 thermo_KaiC_1 KaiC d 73.1 20 0.00043 37.8 9.5 62 121-185 8-70 (237)
400 PRK14970 DNA polymerase III su 73.1 37 0.0008 38.2 12.3 41 119-159 22-65 (367)
401 KOG0737 AAA+-type ATPase [Post 72.8 2.8 6E-05 46.7 2.9 48 132-185 126-173 (386)
402 PF02606 LpxK: Tetraacyldisacc 72.6 16 0.00034 40.7 8.9 125 143-277 47-190 (326)
403 PRK14723 flhF flagellar biosyn 72.6 30 0.00065 42.8 11.8 121 137-288 189-318 (767)
404 COG0541 Ffh Signal recognition 72.2 28 0.00061 39.9 10.6 94 137-252 104-197 (451)
405 CHL00176 ftsH cell division pr 71.9 31 0.00068 42.0 11.8 23 134-156 217-239 (638)
406 cd02037 MRP-like MRP (Multiple 71.8 42 0.00091 33.1 11.0 52 236-291 66-117 (169)
407 PRK13833 conjugal transfer pro 71.7 9.4 0.0002 42.4 6.8 44 113-159 127-170 (323)
408 TIGR00580 mfd transcription-re 71.5 18 0.0004 45.9 10.1 96 422-519 482-581 (926)
409 KOG1807 Helicases [Replication 71.4 16 0.00034 44.4 8.7 69 113-185 377-449 (1025)
410 COG4626 Phage terminase-like p 71.4 11 0.00024 44.3 7.4 137 112-263 59-210 (546)
411 PHA02518 ParA-like protein; Pr 71.2 20 0.00043 36.5 8.8 39 140-181 8-48 (211)
412 TIGR01242 26Sp45 26S proteasom 71.1 16 0.00035 41.2 8.7 24 133-156 156-179 (364)
413 PRK10919 ATP-dependent DNA hel 70.9 5.4 0.00012 48.9 5.2 54 114-173 2-56 (672)
414 TIGR00665 DnaB replicative DNA 70.0 54 0.0012 37.8 13.0 126 122-250 184-318 (434)
415 KOG0738 AAA+-type ATPase [Post 69.8 22 0.00048 40.1 8.9 45 135-186 247-292 (491)
416 PF12846 AAA_10: AAA-like doma 69.5 9.8 0.00021 40.8 6.4 47 133-182 1-47 (304)
417 PRK09165 replicative DNA helic 69.5 80 0.0017 37.3 14.3 127 123-250 207-354 (497)
418 COG2812 DnaX DNA polymerase II 69.4 10 0.00022 44.7 6.7 39 235-276 117-158 (515)
419 PRK08840 replicative DNA helic 69.3 93 0.002 36.5 14.6 59 123-183 207-265 (464)
420 TIGR01243 CDC48 AAA family ATP 69.2 20 0.00044 44.5 9.7 23 134-156 213-235 (733)
421 cd00268 DEADc DEAD-box helicas 69.1 95 0.0021 31.2 13.2 73 439-517 68-149 (203)
422 TIGR00614 recQ_fam ATP-depende 69.1 50 0.0011 38.6 12.5 78 440-519 51-135 (470)
423 KOG0442 Structure-specific end 69.0 65 0.0014 39.8 13.2 44 419-462 347-400 (892)
424 PRK14712 conjugal transfer nic 68.6 28 0.00061 46.4 11.0 61 113-175 834-895 (1623)
425 PRK09376 rho transcription ter 68.6 30 0.00064 39.5 9.9 28 132-159 168-195 (416)
426 PRK13709 conjugal transfer nic 68.6 28 0.0006 47.1 11.1 62 113-176 966-1028(1747)
427 PRK07004 replicative DNA helic 68.3 55 0.0012 38.3 12.5 126 122-250 202-337 (460)
428 TIGR03600 phage_DnaB phage rep 68.2 1E+02 0.0023 35.4 14.8 59 122-182 183-241 (421)
429 TIGR01547 phage_term_2 phage t 68.2 25 0.00055 40.0 9.6 119 137-277 5-142 (396)
430 PTZ00454 26S protease regulato 68.0 13 0.00027 42.7 7.0 37 133-175 179-215 (398)
431 TIGR00416 sms DNA repair prote 67.8 21 0.00045 41.7 8.9 48 136-186 97-144 (454)
432 PF05729 NACHT: NACHT domain 67.6 19 0.00042 34.6 7.5 26 137-162 4-29 (166)
433 PRK13341 recombination factor 67.4 16 0.00035 45.1 8.2 22 134-155 53-74 (725)
434 COG0464 SpoVK ATPases of the A 66.9 7.8 0.00017 45.6 5.2 67 114-186 249-323 (494)
435 TIGR03878 thermo_KaiC_2 KaiC d 66.8 30 0.00066 37.0 9.3 34 136-172 39-72 (259)
436 COG0003 ArsA Predicted ATPase 66.4 30 0.00065 38.5 9.3 57 140-198 9-71 (322)
437 PRK08506 replicative DNA helic 66.4 68 0.0015 37.7 12.8 126 121-250 180-315 (472)
438 PRK09087 hypothetical protein; 66.0 35 0.00077 35.8 9.5 36 239-274 89-125 (226)
439 PRK12608 transcription termina 65.7 23 0.00051 40.1 8.4 40 120-160 121-160 (380)
440 KOG0740 AAA+-type ATPase [Post 65.6 13 0.00029 42.5 6.5 44 136-185 189-232 (428)
441 TIGR00767 rho transcription te 65.3 33 0.00072 39.2 9.5 26 132-157 167-192 (415)
442 PF01637 Arch_ATPase: Archaeal 64.7 24 0.00052 36.0 7.9 22 134-155 21-42 (234)
443 TIGR01241 FtsH_fam ATP-depende 64.5 18 0.00038 42.7 7.6 24 133-156 88-111 (495)
444 COG1066 Sms Predicted ATP-depe 64.3 38 0.00083 38.6 9.6 86 137-251 97-182 (456)
445 PF05127 Helicase_RecD: Helica 64.3 4.2 9.1E-05 41.1 2.0 120 138-275 2-123 (177)
446 PRK05595 replicative DNA helic 63.8 57 0.0012 37.9 11.5 62 121-184 189-250 (444)
447 COG1618 Predicted nucleotide k 63.8 74 0.0016 31.9 10.3 125 134-272 6-136 (179)
448 PRK07414 cob(I)yrinic acid a,c 63.6 1.4E+02 0.003 30.3 12.6 58 230-290 108-169 (178)
449 COG1200 RecG RecG-like helicas 63.4 44 0.00094 40.4 10.3 93 422-517 293-390 (677)
450 PF04364 DNA_pol3_chi: DNA pol 62.3 35 0.00076 32.9 7.9 109 426-565 15-126 (137)
451 KOG1133 Helicase of the DEAD s 61.9 4.9 0.00011 48.0 2.2 80 441-523 630-721 (821)
452 PHA00012 I assembly protein 61.6 17 0.00036 40.4 6.0 34 137-175 5-38 (361)
453 TIGR01243 CDC48 AAA family ATP 61.1 15 0.00032 45.6 6.4 40 134-179 488-527 (733)
454 PRK10037 cell division protein 60.9 35 0.00077 36.1 8.5 29 139-170 8-36 (250)
455 COG3598 RepA RecA-family ATPas 60.9 39 0.00084 37.4 8.5 42 130-171 86-134 (402)
456 PF00437 T2SE: Type II/IV secr 60.7 12 0.00027 40.0 5.0 121 125-285 119-239 (270)
457 PRK04328 hypothetical protein; 60.5 46 0.001 35.4 9.3 46 136-184 26-71 (249)
458 PRK08006 replicative DNA helic 60.4 1.7E+02 0.0036 34.5 14.5 125 123-250 214-349 (471)
459 PF03796 DnaB_C: DnaB-like hel 60.4 51 0.0011 35.0 9.7 112 136-251 22-144 (259)
460 PRK04537 ATP-dependent RNA hel 60.3 68 0.0015 38.7 11.6 126 359-518 30-166 (572)
461 PRK08939 primosomal protein Dn 60.3 22 0.00048 39.2 7.0 28 133-160 156-183 (306)
462 COG4098 comFA Superfamily II D 59.9 28 0.0006 38.7 7.3 96 150-251 291-387 (441)
463 TIGR01054 rgy reverse gyrase. 59.6 69 0.0015 41.9 12.1 54 439-492 120-180 (1171)
464 PRK05917 DNA polymerase III su 59.6 1.3E+02 0.0027 33.1 12.4 114 137-283 23-142 (290)
465 PF06745 KaiC: KaiC; InterPro 59.5 25 0.00055 36.5 7.0 51 135-187 21-71 (226)
466 PRK14701 reverse gyrase; Provi 59.3 72 0.0016 43.2 12.4 60 439-500 121-186 (1638)
467 PRK05973 replicative DNA helic 59.2 24 0.00052 37.4 6.7 54 130-186 61-114 (237)
468 PRK09302 circadian clock prote 59.2 33 0.00071 40.6 8.6 49 136-187 276-324 (509)
469 PRK11192 ATP-dependent RNA hel 59.0 87 0.0019 36.0 11.9 138 359-532 22-172 (434)
470 cd02034 CooC The accessory pro 58.6 1E+02 0.0022 28.7 10.1 48 136-188 2-49 (116)
471 cd01129 PulE-GspE PulE/GspE Th 58.5 16 0.00034 39.4 5.2 43 114-158 63-105 (264)
472 PHA02542 41 41 helicase; Provi 58.4 59 0.0013 38.2 10.3 60 121-183 177-237 (473)
473 TIGR02655 circ_KaiC circadian 58.3 41 0.00088 39.6 9.1 64 120-186 249-313 (484)
474 TIGR01389 recQ ATP-dependent D 57.7 2.7E+02 0.0059 33.6 16.2 61 440-502 53-113 (591)
475 TIGR02782 TrbB_P P-type conjug 57.7 19 0.00041 39.6 5.8 43 114-159 116-158 (299)
476 PF05970 PIF1: PIF1-like helic 57.0 23 0.00049 40.0 6.5 61 114-177 1-63 (364)
477 PHA00350 putative assembly pro 56.9 23 0.00049 40.5 6.4 17 137-153 5-21 (399)
478 PRK10818 cell division inhibit 56.9 51 0.0011 35.2 9.0 52 233-290 109-160 (270)
479 PRK13900 type IV secretion sys 56.6 24 0.00052 39.4 6.5 34 124-157 151-184 (332)
480 PLN00020 ribulose bisphosphate 56.6 17 0.00037 41.1 5.2 42 134-181 149-190 (413)
481 PRK05636 replicative DNA helic 56.6 70 0.0015 37.9 10.6 45 136-182 268-312 (505)
482 TIGR02760 TraI_TIGR conjugativ 56.5 85 0.0018 43.5 12.6 62 110-176 425-486 (1960)
483 PRK06620 hypothetical protein; 56.4 59 0.0013 33.8 9.0 99 168-275 18-122 (214)
484 PF02572 CobA_CobO_BtuR: ATP:c 55.8 1.7E+02 0.0037 29.5 11.7 58 230-290 89-150 (172)
485 TIGR02760 TraI_TIGR conjugativ 55.4 65 0.0014 44.5 11.3 130 113-277 1018-1151(1960)
486 PF01580 FtsK_SpoIIIE: FtsK/Sp 55.1 20 0.00044 36.6 5.3 40 133-172 38-77 (205)
487 COG1110 Reverse gyrase [DNA re 54.6 1.1E+02 0.0023 38.9 11.7 66 437-504 122-193 (1187)
488 PHA00673 acetyltransferase dom 53.8 22 0.00048 35.1 4.9 44 238-281 88-134 (154)
489 TIGR02237 recomb_radB DNA repa 53.7 1.3E+02 0.0028 30.6 11.0 35 137-174 16-50 (209)
490 PRK13705 plasmid-partitioning 53.7 1E+02 0.0022 35.2 11.0 40 137-179 111-153 (388)
491 KOG2340 Uncharacterized conser 53.1 27 0.0006 40.7 6.1 113 425-539 535-653 (698)
492 PF03237 Terminase_6: Terminas 52.9 1.6E+02 0.0034 32.3 12.4 34 218-252 79-112 (384)
493 TIGR00682 lpxK tetraacyldisacc 52.8 38 0.00082 37.5 7.2 19 142-160 39-57 (311)
494 cd03028 GRX_PICOT_like Glutare 52.8 75 0.0016 28.0 7.8 46 440-485 7-58 (90)
495 CHL00195 ycf46 Ycf46; Provisio 52.7 26 0.00057 41.2 6.2 35 133-173 259-293 (489)
496 TIGR00150 HI0065_YjeE ATPase, 52.3 25 0.00055 33.8 5.0 28 130-157 19-46 (133)
497 TIGR03345 VI_ClpV1 type VI sec 52.3 49 0.0011 41.8 8.9 22 137-158 600-621 (852)
498 PRK11776 ATP-dependent RNA hel 52.0 1.3E+02 0.0029 34.8 12.1 74 440-520 72-156 (460)
499 TIGR00602 rad24 checkpoint pro 52.0 1.5E+02 0.0033 36.1 12.6 20 136-155 113-132 (637)
500 PF00158 Sigma54_activat: Sigm 51.7 76 0.0016 31.7 8.5 104 124-261 13-118 (168)
No 1
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.4e-150 Score=1289.20 Aligned_cols=787 Identities=49% Similarity=0.787 Sum_probs=671.0
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhcccccCCCCCCCCCCCCCCccccCCCCC
Q 003311 1 MRLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKHVDGIEPLKDSEDDLLDLDASENGTPRDLHPEEDDIIDSDHND 80 (832)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 80 (832)
+||+|++||+||++||+|||+||.+|+++|+.|+.+- +...++.+. ..++....+
T Consensus 306 ~kl~dq~Kd~Rl~~LL~qt~~yl~sL~s~Vk~qk~~~------~~~~~~~d~-------------------~~i~~~ak~ 360 (1157)
T KOG0386|consen 306 RKLQDQKKDNRLSQLLSQTDSYLPSLSSVVKGQKSEN------PDANSASDI-------------------SGISGSAKA 360 (1157)
T ss_pred HHHHhhccccHHHHhhhhhhHHHHHHHHHHHHhhccc------cccchhhhh-------------------hhhhhhhcc
Confidence 5899999999999999999999999999999997620 000011110 011111222
Q ss_pred CchhHHHHHHhhhhhhhccccccccCCCcCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 81 DSGDLLEGQRQYNSAIHSIEEKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~e~~~~~P~~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
+.++.......||.++|.|.++++.||+.+.||+|++||+.||+||+++|+|+.|||||||||||||+|+|++|+||++.
T Consensus 361 ~~~d~~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~ 440 (1157)
T KOG0386|consen 361 DVDDHAESNGSYYSTAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEH 440 (1157)
T ss_pred hhhhhhhcchhHHHhcchhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHH
Confidence 22235667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceE
Q 003311 161 KGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIY 240 (832)
Q Consensus 161 ~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~ 240 (832)
+...||+|||||+++|.||..||.+|+|++..+.|.|+++.|..+...... ++|+|++|||++++++...|.+++|.|
T Consensus 441 K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~--gKFnVLlTtyEyiikdk~lLsKI~W~y 518 (1157)
T KOG0386|consen 441 KQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRH--GKFNVLLTTYEYIIKDKALLSKISWKY 518 (1157)
T ss_pred cccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHHHHhc--ccceeeeeeHHHhcCCHHHHhccCCcc
Confidence 999999999999999999999999999999999999999999999888776 899999999999999999999999999
Q ss_pred EEEeCCcccCChhhHHHHHHH-ccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCc-ccCC
Q 003311 241 MIVDEGHRLKNHECALAKTIS-GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQ-VALT 318 (832)
Q Consensus 241 vIiDEaHriKN~~sk~~kal~-~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~-~~~~ 318 (832)
+||||+|||||..|+++..+. .|.+.+|++|||||+||++.|||+||||+.|.+|++...|.+||+.||...|. ++++
T Consensus 519 MIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLt 598 (1157)
T KOG0386|consen 519 MIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELT 598 (1157)
T ss_pred eeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCccccc
Confidence 999999999999999999995 88999999999999999999999999999999999999999999999999885 8999
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhccccccc--CCCcchhHHHHHHH
Q 003311 319 DEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT--GTGKSKSLQNLSMQ 396 (832)
Q Consensus 319 ~ee~~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~--~~~~~~~l~~~~~~ 396 (832)
+++...+++|||+||+||+|||.|++|+..||+|++.+++|.||+.|+.+|..+.+.+....+. +.+..+.++|..|+
T Consensus 599 eEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imq 678 (1157)
T KOG0386|consen 599 EEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQ 678 (1157)
T ss_pred chHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999888776 66677899999999
Q ss_pred HHHhhCCCccccc---ccc-chhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcC
Q 003311 397 LRKCCNHPYLFVG---EYN-MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDG 472 (832)
Q Consensus 397 LRk~cnhP~l~~~---~~~-~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG 472 (832)
||+||||||+|.. .+. .+....+++.|||+++|+++|++|++.||+||+|||||+++++|++||..++++|.|+||
T Consensus 679 LRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG 758 (1157)
T KOG0386|consen 679 LRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDG 758 (1157)
T ss_pred HHHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecC
Confidence 9999999999943 222 233468999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 473 STKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 473 ~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
+|+.++|..+++.||.|+++||+||+||+|||+|+|||+||+||+||++|||+++.||.+|||||||+++|+|+||++.+
T Consensus 759 ~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 759 QTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVN 838 (1157)
T ss_pred CcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHhcCHHHHHHHHHhhHH
Q 003311 553 SIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEE 632 (832)
Q Consensus 553 siEe~Il~~~~~K~~l~~~vi~~g~~~~~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~l~~r~~~e~~~f~~~d~~ 632 (832)
++||+|++++..|++++.+||++|.|++.+++.+|+++|+.|+....++.+++++++++||.|+||+|+|+++|++||++
T Consensus 839 sveE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~~larseeE~~~f~~md~~ 918 (1157)
T KOG0386|consen 839 SVEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNSMLARSEEEFELFHKMDEE 918 (1157)
T ss_pred HHHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHHHHhcchHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred HHHhhhh---cccccCcCCcccccccCCCchhhhhccccccCCCCcCCCCcccccccccCCCCCHHHHHHHhhcCCCc-h
Q 003311 633 RRQKENY---RSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQDI-S 708 (832)
Q Consensus 633 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 708 (832)
|.++++. ++||++++++|+|+.......+.........+ ..++|+|+||+|+|+|.|||.||+++++++.+. .
T Consensus 919 r~~~e~~~~~k~rl~ee~e~p~~i~~~~~~~~~~~~~~~~~~---~~~rg~r~Rkev~y~d~~te~q~~k~~e~~~~~~~ 995 (1157)
T KOG0386|consen 919 RRATENQQEKKPRLVEEAELPADIYKRDQGVERLSEEEEEEK---ILGRGRRARKEVVYSDRLTEMQWLKENESVNKEDS 995 (1157)
T ss_pred HHhhhhhccccchhhhhhhcHHHHHhcchhhhhhhhhhhhhc---cccccccccceeecccccchhhhhhhccccccccc
Confidence 9987654 67999999999999877653221111111111 357999999999999999999999999996543 3
Q ss_pred hhhhhhccccCCCCCCCCCCCCcchhhhhhhccc------cccCCCcCCCCCccccCCCcccc-ccccccccCccchhhh
Q 003311 709 KLSTRGKRREYLPSEGNESASNSTGAEKKNLDMK------NEIFPLASEGTSEDTFGSAPKRL-RFERRNSESSDIQSVE 781 (832)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 781 (832)
+...++++|.....+.......+..-..+..+.. .......++..-.+.|...|-++ .+.+..-.+.
T Consensus 996 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~------ 1069 (1157)
T KOG0386|consen 996 EEEERRRGRKKSSLDTRPLSQKKRKLRPRSPKQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKK------ 1069 (1157)
T ss_pred hhhhhccCCCccccccccchhhcccccCCChHHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcc------
Confidence 3344333322222222211111110000111111 11111111222445554455333 2244322211
Q ss_pred hhcccccccCCCCCccccccccccccccccccCCCCCCCCCCCCCCC
Q 003311 782 KSEHKGVQGSGLNGHILTWNTHRKKRSSYVVQTSSSDSRGQNSNGRG 828 (832)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (832)
..+.+ ..+++|.+|.++..|+..+.++.+.+++|.-|+.|+.
T Consensus 1070 ~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~ 1111 (1157)
T KOG0386|consen 1070 PVAID-----KIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSR 1111 (1157)
T ss_pred hhhHH-----HHhhhccccccchHHHHHHHHHhhcchhhhhccCCce
Confidence 11111 4578999999999999999999999999998888764
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=1.3e-124 Score=1050.04 Aligned_cols=575 Identities=46% Similarity=0.798 Sum_probs=499.1
Q ss_pred ccccCCCcCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHH
Q 003311 102 KVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 181 (832)
Q Consensus 102 ~~~~~P~~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~ 181 (832)
.+..+|..+.+++|||||++||+||+++|.|+.|||||||||||||+|+|+++.|+....+..||+||+||+|++.||.+
T Consensus 155 ~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~ 234 (971)
T KOG0385|consen 155 RFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMN 234 (971)
T ss_pred cccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHH
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHH
Q 003311 182 EFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS 261 (832)
Q Consensus 182 E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~ 261 (832)
||.+|+|++++++|+|++..|..++..+... +.|+||||||++++++...|.++.|.|+||||||||||.+|++++.++
T Consensus 235 Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~-~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr 313 (971)
T KOG0385|consen 235 EFKRFTPSLNVVVYHGDKEERAALRRDIMLP-GRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILR 313 (971)
T ss_pred HHHHhCCCcceEEEeCCHHHHHHHHHHhhcc-CCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHH
Confidence 9999999999999999999999998887766 699999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhh
Q 003311 262 GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 341 (832)
Q Consensus 262 ~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~ 341 (832)
.|.+.+||+|||||+|||+.|||+|||||.|++|++.+.|..||..... +.....+.+||.+|+||+|||+
T Consensus 314 ~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~---------~~~~e~v~~Lh~vL~pFlLRR~ 384 (971)
T KOG0385|consen 314 EFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC---------EGDQELVSRLHKVLRPFLLRRI 384 (971)
T ss_pred HhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc---------ccCHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999986421 1223378999999999999999
Q ss_pred HhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCC-CcchhHHHHHHHHHHhhCCCccccccc--cc-hhhH
Q 003311 342 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQLRKCCNHPYLFVGEY--NM-WRKE 417 (832)
Q Consensus 342 k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~-~~~~~l~~~~~~LRk~cnhP~l~~~~~--~~-~~~~ 417 (832)
|.+|+..|||+.+.+++|.||..|+++|..++......+.... +....++|++|||||||||||||.+.. ++ ...+
T Consensus 385 K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttde 464 (971)
T KOG0385|consen 385 KSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 464 (971)
T ss_pred HHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcch
Confidence 9999999999999999999999999999999988776665443 256789999999999999999999822 23 3578
Q ss_pred HHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 418 EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 418 ~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
+++.+|||+.+|+++|++|++.||||||||||+.|+|||++||..++|.||||||+|+.++|..+|+.||++++..||||
T Consensus 465 hLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFl 544 (971)
T KOG0385|consen 465 HLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFL 544 (971)
T ss_pred HHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCc
Q 003311 498 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGL 577 (832)
Q Consensus 498 lSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~~g~ 577 (832)
+||||||+||||++||+||+||++|||++++||++|||||||+++|.||||||++||||+|++|+..|+.|++.||++|+
T Consensus 545 LSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g~ 624 (971)
T KOG0385|consen 545 LSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQGR 624 (971)
T ss_pred EeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccCCC--CCCCCHHHHHHHHhcCHHHHHHHHHhhHHHHHhhhh-cccccCcCCcccccc
Q 003311 578 FNTTSTAQDRREMLKEIMRRGTSSLG--TDVPSEREINRLAARSDEEFWLFEKMDEERRQKENY-RSRLMEDHEVPEWAY 654 (832)
Q Consensus 578 ~~~~~~~~~~~~~l~~il~~~~~~~~--~~~~~~~~~~~l~~r~~~e~~~f~~~d~~~~~~~~~-~~~~~~~~~~~~~~~ 654 (832)
.....+..+....+-.++++|+.... .+..-.++|+.|+.|+++... .+++.... .+. ..+-+....++.|.+
T Consensus 625 l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~~~dDid~il~~~e~kt~---e~~~~~~~-~~~~~~~~~~~~~~y~~eG 700 (971)
T KOG0385|consen 625 LEEQKSNGLGKDELLNLLRFGADPVFESKESTISDDIDRILERGEEKTA---ELNAKEAK-LGESDLRNFGMISVYNFEG 700 (971)
T ss_pred hhhhhccccchHHHHHHHHcCchhhhhhcccccchhHHHHHHhhhhhcc---CcchHHHh-hCcchhhhcCcceeeccCC
Confidence 44333222444555677899876532 111123399999999996432 22222111 110 001112266788877
Q ss_pred cCCCchhhhhccccccCCCCcCCCCcccccccccCCCCCHHHHHHHhhcCCC
Q 003311 655 SAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENGQD 706 (832)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (832)
.+..+ .. ..+ .|+.+.||.|+.. +..+-.++..|+-
T Consensus 701 ~d~~e--k~----~~~---~wiep~krerk~~-------d~y~r~~l~~g~~ 736 (971)
T KOG0385|consen 701 EDYKE--KQ----SLF---KWIEPPKRERKAN-------DAYFREALRVGEP 736 (971)
T ss_pred cchhh--hh----hhh---hhcCCchhhhhhh-------hhHHHHHHhcCCC
Confidence 65531 11 111 2888999999964 5556666666654
No 3
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=4.1e-112 Score=988.46 Aligned_cols=507 Identities=47% Similarity=0.812 Sum_probs=464.6
Q ss_pred cccccCCCcCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHH
Q 003311 101 EKVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 180 (832)
Q Consensus 101 e~~~~~P~~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~ 180 (832)
.++..||.++.|.+||+||++||+||+..|.++.+||||||||||||+|+|+++.+|+......||+|||||+|++.+|.
T Consensus 357 ~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~ 436 (1373)
T KOG0384|consen 357 RKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWE 436 (1373)
T ss_pred HHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcC-----CccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhH
Q 003311 181 NEFSTWAPSIAAVVYDGRPDERKAMREEFFSERG-----RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECA 255 (832)
Q Consensus 181 ~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~-----~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk 255 (832)
+||..|+ .+++++|+|+...|..++...+.... +|+++||||+++.++...|..++|.+++||||||+||..|+
T Consensus 437 ~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~ 515 (1373)
T KOG0384|consen 437 REFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESK 515 (1373)
T ss_pred HHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHH
Confidence 9999999 99999999999999988876554333 79999999999999999999999999999999999999999
Q ss_pred HHHHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhh
Q 003311 256 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 335 (832)
Q Consensus 256 ~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~p 335 (832)
++..+..|...+||++||||+||++.|||+|++||+|+-|.+...|...|.. ++...+..||..|+|
T Consensus 516 l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~-------------~~e~~~~~L~~~L~P 582 (1373)
T KOG0384|consen 516 LYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE-------------ETEEQVRKLQQILKP 582 (1373)
T ss_pred HHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc-------------hhHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999999887732 234458899999999
Q ss_pred hhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCC-CcchhHHHHHHHHHHhhCCCccccccccc-
Q 003311 336 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQLRKCCNHPYLFVGEYNM- 413 (832)
Q Consensus 336 fllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~-~~~~~l~~~~~~LRk~cnhP~l~~~~~~~- 413 (832)
|||||+|+||++.||++.|.++.|+||..|+++|+.|+.++...+..|. +....+.|++|.|++|||||||+.+....
T Consensus 583 ~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~ 662 (1373)
T KOG0384|consen 583 FLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKI 662 (1373)
T ss_pred HHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHH
Confidence 9999999999999999999999999999999999999999988877654 44578999999999999999999873221
Q ss_pred ----------hhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHH
Q 003311 414 ----------WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL 483 (832)
Q Consensus 414 ----------~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i 483 (832)
..-..++.+|||+.+|++||.+|++.||||||||||+.|||||++||..++|+|-||||++..+-|+.+|
T Consensus 663 ~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AI 742 (1373)
T KOG0384|consen 663 LGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAI 742 (1373)
T ss_pred HHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHH
Confidence 1234678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 003311 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563 (832)
Q Consensus 484 ~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~ 563 (832)
++||+++++.|||||||||||+||||++||||||||++|||+.++||++|||||||++.|.||||||.+|+||.|+++|.
T Consensus 743 DhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk 822 (1373)
T KOG0384|consen 743 DHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAK 822 (1373)
T ss_pred HhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcCCCC--CCHHHHHHHHHHHHHhcccCCCCC------CCCHHHHHHHHhcCHH
Q 003311 564 QKMGIDAKVIQAGLFNTT--STAQDRREMLKEIMRRGTSSLGTD------VPSEREINRLAARSDE 621 (832)
Q Consensus 564 ~K~~l~~~vi~~g~~~~~--~~~~~~~~~l~~il~~~~~~~~~~------~~~~~~~~~l~~r~~~ 621 (832)
.|+.|+.+|||.+..+.. ....-..+.|.+||++|+..+.-+ .+.+.+|++||.|.+.
T Consensus 823 ~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae~ 888 (1373)
T KOG0384|consen 823 LKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEESKFCEMDIDEILERAET 888 (1373)
T ss_pred HHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhccccccccccccCHHHHHhhccc
Confidence 999999999999876322 122233466899999999865322 2345789999988764
No 4
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=6.8e-101 Score=927.51 Aligned_cols=581 Identities=45% Similarity=0.794 Sum_probs=495.0
Q ss_pred ccccCCCcCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHH
Q 003311 102 KVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 181 (832)
Q Consensus 102 ~~~~~P~~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~ 181 (832)
.+..+|..+. ++|||||++||+||+.++.++.+||||||||||||+|+|+++.++....+..+|+|||||.+++.||.+
T Consensus 158 ~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~ 236 (1033)
T PLN03142 158 RLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMN 236 (1033)
T ss_pred eeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHH
Confidence 4567898887 799999999999999999999999999999999999999999999887788899999999999999999
Q ss_pred HHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHH
Q 003311 182 EFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS 261 (832)
Q Consensus 182 E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~ 261 (832)
||.+|+|.+.+++|+|....|.......... +.|+||||||+++.++...|..+.|++|||||||+|||..|++++++.
T Consensus 237 Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~-~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr 315 (1033)
T PLN03142 237 EIRRFCPVLRAVKFHGNPEERAHQREELLVA-GKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMR 315 (1033)
T ss_pred HHHHHCCCCceEEEeCCHHHHHHHHHHHhcc-cCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHH
Confidence 9999999999999999998887766554433 679999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhh
Q 003311 262 GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 341 (832)
Q Consensus 262 ~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~ 341 (832)
.+.+.+||+|||||++|++.|||+||+||.|++|++...|..||..+.. ......+.+||.+|+||++||+
T Consensus 316 ~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~---------~~~~e~i~~L~~~L~pf~LRR~ 386 (1033)
T PLN03142 316 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE---------NDQQEVVQQLHKVLRPFLLRRL 386 (1033)
T ss_pred HhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccc---------cchHHHHHHHHHHhhHHHhhhh
Confidence 9999999999999999999999999999999999999999999986321 1234567899999999999999
Q ss_pred HhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccc---cchhhHH
Q 003311 342 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY---NMWRKEE 418 (832)
Q Consensus 342 k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~---~~~~~~~ 418 (832)
|.+|...||++.+.+++|+||+.|+.+|..+.......+..+. ....+.+++|+||+||+||+++.+.. .......
T Consensus 387 KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~-~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~ 465 (1033)
T PLN03142 387 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGG-ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEH 465 (1033)
T ss_pred HHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhH
Confidence 9999999999999999999999999999999876555444332 34568899999999999999987632 2234567
Q ss_pred HHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 003311 419 IIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 498 (832)
Q Consensus 419 l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~Ll 498 (832)
++..|+|+.+|+++|+.+...|+||||||||+.++++|+++|..+|+.|++|||+++..+|+.+|+.||.+++..+|||+
T Consensus 466 lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLL 545 (1033)
T PLN03142 466 LVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLL 545 (1033)
T ss_pred HhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred eccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCcC
Q 003311 499 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 578 (832)
Q Consensus 499 St~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~~g~~ 578 (832)
||+|||+||||+.|++||+||+||||+.++||+||||||||+++|.|||||+.+||||+|++++..|+.++..||+.|.+
T Consensus 546 STrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~ 625 (1033)
T PLN03142 546 STRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRL 625 (1033)
T ss_pred eccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCC---CCCCCHHHHHHHHhcCHHHHH-HHHHhhHHHHHhhhhcccccCcCCcccccc
Q 003311 579 NTTSTAQDRREMLKEIMRRGTSSLG---TDVPSEREINRLAARSDEEFW-LFEKMDEERRQKENYRSRLMEDHEVPEWAY 654 (832)
Q Consensus 579 ~~~~~~~~~~~~l~~il~~~~~~~~---~~~~~~~~~~~l~~r~~~e~~-~f~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 654 (832)
..... .. .+.|.+|+++|+..+. ....++++|+.||+|+++... +.+++..-- ...+...+-....+++|.+
T Consensus 626 ~~~~~-~~-~~eL~~ll~~ga~~~f~~~~~~~~~~did~il~~~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~~~~~g 701 (1033)
T PLN03142 626 AEQKT-VN-KDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFT--EDAIKFKMDDTAELYDFDD 701 (1033)
T ss_pred ccccc-CC-HHHHHHHHHhChHHhhhccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHhc--hhhhcccccCCcceeeecC
Confidence 54421 22 3446678888877542 235689999999999998764 333333221 1123334444568999988
Q ss_pred cCCCchhhhhccccccCCCCcCCCCcccccccccCCCCCHHHHHHHhhcC
Q 003311 655 SAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWMKAVENG 704 (832)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (832)
.+...... .+..+.. ...|+.++||+||. +|+. +.-+..+|..+
T Consensus 702 ~~~~~~~~-~~~~~~~-~~~~~~~~~re~~~-~~~~---~~~~~~~~~~~ 745 (1033)
T PLN03142 702 EDDKDENK-LDFKKIV-SDNWIDPPKRERKR-NYSE---SEYFKQAMRQG 745 (1033)
T ss_pred ccccchhh-hhHhhhc-cccccccchhhhhc-ccch---hHHHHHHHhcC
Confidence 76542211 1111112 23499999999994 6763 23344455444
No 5
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2e-100 Score=873.73 Aligned_cols=470 Identities=46% Similarity=0.800 Sum_probs=431.5
Q ss_pred CCcCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhh
Q 003311 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 186 (832)
Q Consensus 107 P~~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 186 (832)
|.++ .|.||+||..||.||+.+|+++.|||||||||||||||+|++++||....++.||+|||||.+++-||.-||++|
T Consensus 609 PsLL-rGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRw 687 (1958)
T KOG0391|consen 609 PSLL-RGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRW 687 (1958)
T ss_pred hHHH-HHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhh
Confidence 4444 489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccc
Q 003311 187 APSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ 266 (832)
Q Consensus 187 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~ 266 (832)
||+++++.|+|+..+|+..++.|... ..|+|+||+|..+..+...|+..+|.|+|+||||+|||..|..++++..|++.
T Consensus 688 cPglKILTYyGs~kErkeKRqgW~kP-naFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsq 766 (1958)
T KOG0391|consen 688 CPGLKILTYYGSHKERKEKRQGWAKP-NAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQ 766 (1958)
T ss_pred CCcceEeeecCCHHHHHHHhhcccCC-CeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccchh
Confidence 99999999999999999998888766 78999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHh
Q 003311 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVE 346 (832)
Q Consensus 267 ~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~ 346 (832)
+||+|||||+||++.|||+|++||+|.+|.+.+.|+.||+.|... ..+.+.+-....+.+||++|+||+|||+|.||+
T Consensus 767 rRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltg--miEgsqeyn~klV~RLHkVlrPfiLRRlK~dVE 844 (1958)
T KOG0391|consen 767 RRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTG--MIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVE 844 (1958)
T ss_pred heeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchh--hcccchhhchHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999764 344445555778999999999999999999999
Q ss_pred hcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccc------------cch
Q 003311 347 KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY------------NMW 414 (832)
Q Consensus 347 ~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~------------~~~ 414 (832)
++||.|.|++++|.+|.-|+.+|+.+.......-.-.+|...+..|++|+||+|||||-||.... ...
T Consensus 845 KQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~a 924 (1958)
T KOG0391|consen 845 KQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSA 924 (1958)
T ss_pred HhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceecccc
Confidence 99999999999999999999999999876544333445667788999999999999998873100 000
Q ss_pred -------------------------------------------------------------------h----------hH
Q 003311 415 -------------------------------------------------------------------R----------KE 417 (832)
Q Consensus 415 -------------------------------------------------------------------~----------~~ 417 (832)
. .+
T Consensus 925 s~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphte 1004 (1958)
T KOG0391|consen 925 SKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTE 1004 (1958)
T ss_pred ccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccc
Confidence 0 00
Q ss_pred H-------------------H-----------------------------------------------------------
Q 003311 418 E-------------------I----------------------------------------------------------- 419 (832)
Q Consensus 418 ~-------------------l----------------------------------------------------------- 419 (832)
. +
T Consensus 1005 ea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a 1084 (1958)
T KOG0391|consen 1005 EASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGA 1084 (1958)
T ss_pred cccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchh
Confidence 0 0
Q ss_pred --------------------------------------------------------------------------------
Q 003311 420 -------------------------------------------------------------------------------- 419 (832)
Q Consensus 420 -------------------------------------------------------------------------------- 419 (832)
T Consensus 1085 ~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~ 1164 (1958)
T KOG0391|consen 1085 LGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEG 1164 (1958)
T ss_pred hccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 003311 420 -------------------------------------------------------------------------------- 419 (832)
Q Consensus 420 -------------------------------------------------------------------------------- 419 (832)
T Consensus 1165 i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~~ 1244 (1958)
T KOG0391|consen 1165 IVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQTTAP 1244 (1958)
T ss_pred hccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchhhccch
Confidence
Q ss_pred -----------HhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcC
Q 003311 420 -----------IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNA 488 (832)
Q Consensus 420 -----------~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~ 488 (832)
--.+||++.|.-+|.+|+..|||||||+||+.|+|+|+.+|.++|+.|+||||+++.++|+.++++||.
T Consensus 1245 r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNa 1324 (1958)
T KOG0391|consen 1245 RLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNA 1324 (1958)
T ss_pred hhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcC
Confidence 000799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 003311 489 PDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGI 568 (832)
Q Consensus 489 ~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l 568 (832)
|..+||||+||++||+||||+.||||||||+||||.++.||++|||||||+++|+|||||++.|||+.||.++.+|..|
T Consensus 1325 -D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L 1403 (1958)
T KOG0391|consen 1325 -DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRML 1403 (1958)
T ss_pred -CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHH
Confidence 6779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcCCCC
Q 003311 569 DAKVIQAGLFNTT 581 (832)
Q Consensus 569 ~~~vi~~g~~~~~ 581 (832)
++.+|++|.|...
T Consensus 1404 ~evaiqggdfTt~ 1416 (1958)
T KOG0391|consen 1404 DEVAIQGGDFTTA 1416 (1958)
T ss_pred HHHhhccCCccHH
Confidence 9999999998765
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-97 Score=836.88 Aligned_cols=472 Identities=46% Similarity=0.754 Sum_probs=415.8
Q ss_pred cccCCCcCC-CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHH
Q 003311 103 VTEQPTLLQ-GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 181 (832)
Q Consensus 103 ~~~~P~~l~-~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~ 181 (832)
+.+||..+. +.+|+|||+-||+||.-+|.++.+||||||||||||+|+||++++|.+.+. .||+|||||.|++.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchhHHHHHH
Confidence 455777664 679999999999999999999999999999999999999999999998754 899999999999999999
Q ss_pred HHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHH---HhHHHHhhcCceEEEEeCCcccCChhhHHHH
Q 003311 182 EFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIM---RDRQYLKKVQWIYMIVDEGHRLKNHECALAK 258 (832)
Q Consensus 182 E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~---~d~~~L~~~~w~~vIiDEaHriKN~~sk~~k 258 (832)
||.+|||.++|..|+|+..+|+.++..+......|||++|||..+. .++.+|+..+|+++|.||||.+||..|..++
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 9999999999999999999999999988887779999999999985 4678999999999999999999999999999
Q ss_pred HHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCCh-HHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 003311 259 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSV-ENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337 (832)
Q Consensus 259 al~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~-~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfl 337 (832)
.|..+++.+||+|||||+|||+.|||+||.|++|.+|.+. ..+...|...-...+..+-.- .....+.|...++.||+
T Consensus 546 ~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~-l~qerIsrAK~im~PFI 624 (941)
T KOG0389|consen 546 HLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENAL-LSQERISRAKTIMKPFI 624 (941)
T ss_pred HhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHH-HHHHHHHHHHHhhhHHH
Confidence 9999999999999999999999999999999999999754 567766654332211111000 11235788889999999
Q ss_pred hhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCc--chhHHHHHHHHHHhhCCCccccccccchh
Q 003311 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGK--SKSLQNLSMQLRKCCNHPYLFVGEYNMWR 415 (832)
Q Consensus 338 lRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~--~~~l~~~~~~LRk~cnhP~l~~~~~~~~~ 415 (832)
|||.|.+|...||+|..++.+|+|++.|+.+|..+.+............ ... .+++|+||+++|||.|+...|....
T Consensus 625 LRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~-~~vlmqlRK~AnHPLL~R~~Y~de~ 703 (941)
T KOG0389|consen 625 LRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS-GNVLMQLRKAANHPLLFRSIYTDEK 703 (941)
T ss_pred HHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc-chHHHHHHHHhcChhHHHHhccHHH
Confidence 9999999999999999999999999999999999887653322221111 111 6799999999999999854332110
Q ss_pred -------------------------------------------------hHHHHhhcchHHHHHHHHHhhhhcCCeEEEE
Q 003311 416 -------------------------------------------------KEEIIRASGKFELLDRLLPKLRKSGHRVLLF 446 (832)
Q Consensus 416 -------------------------------------------------~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIF 446 (832)
.+..|-.|||+..|..+|++++..|+|||||
T Consensus 704 L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiF 783 (941)
T KOG0389|consen 704 LRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIF 783 (941)
T ss_pred HHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEe
Confidence 1123556999999999999999999999999
Q ss_pred ecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhh
Q 003311 447 SQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQM 526 (832)
Q Consensus 447 sq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~ 526 (832)
||||.|+|||+.+|..+++.|+|+||+|....|+.+|+.||.. .++||||+||+|||.||||++||+||++|.++||..
T Consensus 784 SQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d-~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~d 862 (941)
T KOG0389|consen 784 SQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTD-KDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYD 862 (941)
T ss_pred eHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccC-CceEEEEEeeccCcceecccccceEEEeecCCCCcc
Confidence 9999999999999999999999999999999999999999995 469999999999999999999999999999999999
Q ss_pred HHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCcC
Q 003311 527 DQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 578 (832)
Q Consensus 527 ~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~~g~~ 578 (832)
+.||.+||||+||+|+|+|||||+++||||.|+.+++.|+.|+..+...+.-
T Consensus 863 D~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 863 DKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKG 914 (941)
T ss_pred cchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccc
Confidence 9999999999999999999999999999999999999999999999877653
No 7
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-97 Score=819.16 Aligned_cols=464 Identities=46% Similarity=0.827 Sum_probs=421.8
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHH
Q 003311 104 TEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 183 (832)
Q Consensus 104 ~~~P~~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 183 (832)
.+||.++. ++|++||+.|++|++.+|.+|.|||||||||||||+|+|+++++|.+.+.+.||||||+|.|++.||+.||
T Consensus 558 V~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqEi 636 (1185)
T KOG0388|consen 558 VPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQEI 636 (1185)
T ss_pred ccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHHH
Confidence 46788876 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCceEEEEcCChhHHHHHHHHHHh-----hcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHH
Q 003311 184 STWAPSIAAVVYDGRPDERKAMREEFFS-----ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAK 258 (832)
Q Consensus 184 ~k~~p~~~v~~~~g~~~~r~~~~~~~~~-----~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~k 258 (832)
.+|+|.++++.|-|+..+|+.++..|.. ....|+||||||+++..+..+|.+++|.|+|+|||+-||...|..++
T Consensus 637 srFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~RWK 716 (1185)
T KOG0388|consen 637 SRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSSRWK 716 (1185)
T ss_pred HHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhhHHH
Confidence 9999999999999999999998875432 34789999999999999999999999999999999999999999999
Q ss_pred HHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhh
Q 003311 259 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338 (832)
Q Consensus 259 al~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfll 338 (832)
.+..|+++.||+||||||||+..|||+||+|++|.+|.+...|.+||+..+........+- ....+.|||.+|+||||
T Consensus 717 tLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tl--neqqL~RLH~ILKPFML 794 (1185)
T KOG0388|consen 717 TLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTL--NEQQLQRLHAILKPFML 794 (1185)
T ss_pred HHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCc--CHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999999998776533221111 22357899999999999
Q ss_pred hhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCcccccccc------
Q 003311 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN------ 412 (832)
Q Consensus 339 RR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~------ 412 (832)
||.|++|..+|..|.++.++|++|.-|+.+|+.+..... ...+.+++||||++||||-||.....
T Consensus 795 RRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS---------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~ 865 (1185)
T KOG0388|consen 795 RRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS---------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSL 865 (1185)
T ss_pred HHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEE
Confidence 999999999999999999999999999999999986543 23355799999999999998742100
Q ss_pred ------------------------------------chh-------------------------------------hH--
Q 003311 413 ------------------------------------MWR-------------------------------------KE-- 417 (832)
Q Consensus 413 ------------------------------------~~~-------------------------------------~~-- 417 (832)
.+. .+
T Consensus 866 ~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~ 945 (1185)
T KOG0388|consen 866 EVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEA 945 (1185)
T ss_pred EcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHH
Confidence 000 00
Q ss_pred ----------------------------------------------------------------------------HHHh
Q 003311 418 ----------------------------------------------------------------------------EIIR 421 (832)
Q Consensus 418 ----------------------------------------------------------------------------~l~~ 421 (832)
..+.
T Consensus 946 ~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~Fit 1025 (1185)
T KOG0388|consen 946 GKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFIT 1025 (1185)
T ss_pred HHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhc
Confidence 0023
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
.|+|+..|+.+|+++++.|||||+|.||+.|+|+|++||.++||.|+|+||+.+..+|..++.+|+. +++||||+||+
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~--sdiFvFLLSTR 1103 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA--SDIFVFLLSTR 1103 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC--CceEEEEEecc
Confidence 3899999999999999999999999999999999999999999999999999999999999999998 56999999999
Q ss_pred ccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCcCCCC
Q 003311 502 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTT 581 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~~g~~~~~ 581 (832)
|||+||||++||+|||||++|||..+.||++||||.||+++|+||||++.+||||+|++++.+|..+...||.++.|.+.
T Consensus 1104 AGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~~~qg~ 1183 (1185)
T KOG0388|consen 1104 AGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGNIFQGE 1183 (1185)
T ss_pred cCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887543
No 8
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6.6e-94 Score=807.74 Aligned_cols=465 Identities=37% Similarity=0.649 Sum_probs=409.2
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceE
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAA 192 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v 192 (832)
..|+|||.+||+||..+|.++.||||+||||||||||+|++++.|.......+|+|||||.+++.||..||.+|+|.++|
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcceEE
Confidence 48999999999999999999999999999999999999999999998866779999999999999999999999999999
Q ss_pred EEEcCChhH-HHHH------HHH--HHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc
Q 003311 193 VVYDGRPDE-RKAM------REE--FFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY 263 (832)
Q Consensus 193 ~~~~g~~~~-r~~~------~~~--~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l 263 (832)
.+|+|+... |... ... .........|+||||+.+....+.+..+.|+|+|+||||+|+|++++.+.+++.+
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~islackki 363 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKISLACKKI 363 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccHHHHHHHhc
Confidence 999987652 1000 000 0011234579999999999999999999999999999999999999999999999
Q ss_pred ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHH---HHHHHHhhhhhhhhhh
Q 003311 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLL---IIRRLHHVIRPFILRR 340 (832)
Q Consensus 264 ~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~---~~~~L~~~L~pfllRR 340 (832)
++.+|++|||||+||++.|||+|++|+.|+.+++...|.+.|..|+..++....++.+... ....|+.+|.||+|||
T Consensus 364 ~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR 443 (923)
T KOG0387|consen 364 RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRR 443 (923)
T ss_pred cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888888776543 4455999999999999
Q ss_pred hHhHHhh-cCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccc--cch--h
Q 003311 341 KKDEVEK-YLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY--NMW--R 415 (832)
Q Consensus 341 ~k~dv~~-~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~--~~~--~ 415 (832)
+|.+|.. .||.|.+.+++|.||+.|+.+|+.+.+.....-. -.++...+.. +.-||++||||-|+.... ... .
T Consensus 444 ~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i-~ng~~~~l~G-i~iLrkICnHPdll~~~~~~~~~~~D 521 (923)
T KOG0387|consen 444 MKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKI-LNGKRNCLSG-IDILRKICNHPDLLDRRDEDEKQGPD 521 (923)
T ss_pred HHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHH-HcCCccceec-hHHHHhhcCCcccccCcccccccCCC
Confidence 9999998 9999999999999999999999998865332110 0111222222 346899999999998741 110 1
Q ss_pred hHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHH-hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCce
Q 003311 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK-LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494 (832)
Q Consensus 416 ~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~-~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~ 494 (832)
.+..+..|||+++|..+|..++.+|+|||+|+|...|+|||+.+|. ..||.|+|+||+|+...|+.+|++||++. .++
T Consensus 522 ~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~-s~~ 600 (923)
T KOG0387|consen 522 YEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDE-SIF 600 (923)
T ss_pred cCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCC-ceE
Confidence 1145678999999999999999999999999999999999999999 79999999999999999999999999855 489
Q ss_pred EEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh
Q 003311 495 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQ 574 (832)
Q Consensus 495 v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~ 574 (832)
|||++|++||+||||+.||+||+|||+|||+.+.||..||+||||+|+|.||||++.+||||+||.++-.|..|.+.++.
T Consensus 601 VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~ 680 (923)
T KOG0387|consen 601 VFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILK 680 (923)
T ss_pred EEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCcCCC
Q 003311 575 AGLFNT 580 (832)
Q Consensus 575 ~g~~~~ 580 (832)
.-+...
T Consensus 681 ~p~q~R 686 (923)
T KOG0387|consen 681 NPEQRR 686 (923)
T ss_pred CHHHhh
Confidence 654333
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=5.1e-91 Score=807.21 Aligned_cols=558 Identities=34% Similarity=0.569 Sum_probs=461.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc--------cCCCCC------------CCCCcchhcccccCCCCCCCCCCCCCC
Q 003311 12 LTTLLEETNKLLVNLGAAVQRQKDSKH--------VDGIEP------------LKDSEDDLLDLDASENGTPRDLHPEED 71 (832)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (832)
+...++..-++++.++..+.+|...+. .-++.+ .++..+.+++.+...+....-+.+.+.
T Consensus 852 m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~ 931 (1549)
T KOG0392|consen 852 MATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEA 931 (1549)
T ss_pred HHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhccccccc
Confidence 334556677788888888877776542 111221 255555566555544443322222222
Q ss_pred ccccCCCCCCchhHHHHHHhhhhhhhccccccccC----CCcCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHH
Q 003311 72 DIIDSDHNDDSGDLLEGQRQYNSAIHSIEEKVTEQ----PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKT 147 (832)
Q Consensus 72 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~~~~~----P~~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKT 147 (832)
. ..+..+.+.++...+..+...+.++...-.-+ |..+ ..+||.||++||+|+..+..-+.+|||||+||||||
T Consensus 932 g--~~~p~gls~eLl~~ke~erkFLeqlldpski~~y~Ip~pI-~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKT 1008 (1549)
T KOG0392|consen 932 G--IPDPTGLSKELLASKEEERKFLEQLLDPSKIPEYKIPVPI-SAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKT 1008 (1549)
T ss_pred C--CCCCccccHHHHHhHHHHHHHHHHhcCcccCCccccccch-hHHHHHHHHhccHHHHHHHHhcccceeeccccccHH
Confidence 2 23456778888888777777666654322211 2222 379999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC------CCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEec
Q 003311 148 IQTIALIAYLLENKG------VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLIT 221 (832)
Q Consensus 148 iqaiali~~l~~~~~------~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvIt 221 (832)
+|+|++++.-..... ...|.|||||.++..+|+.|+.+|+|.++|..|.|.+..|..++... .+.+|+||
T Consensus 1009 LQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~----~~~~iiVt 1084 (1549)
T KOG0392|consen 1009 LQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKFFPFLKVLQYVGPPAERRELRDQY----KNANIIVT 1084 (1549)
T ss_pred HHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHhcchhhhhhhcCChHHHHHHHhhc----cccceEEe
Confidence 999999975544331 24589999999999999999999999999999999999999888765 67799999
Q ss_pred CHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHH
Q 003311 222 HYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENF 301 (832)
Q Consensus 222 Tye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F 301 (832)
+|+.+++|..+|.++.|.|+|+||+|-|||..++++++++.+.+.||++|||||+|||+.|||+|++||+|+.+++...|
T Consensus 1085 SYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqF 1164 (1549)
T KOG0392|consen 1085 SYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQF 1164 (1549)
T ss_pred eHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccCcccCCh---HHHHHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhccc
Q 003311 302 EEWFNAPFKDRGQVALTD---EEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRV 378 (832)
Q Consensus 302 ~~~f~~~~~~~~~~~~~~---ee~~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~ 378 (832)
.+.|.+|+........+. +....++..||+.+-||+|||+|.||.++||||....++|+|++.|+++|+.+......
T Consensus 1165 qsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~ 1244 (1549)
T KOG0392|consen 1165 QSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQ 1244 (1549)
T ss_pred HHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhcc
Confidence 999999998755443333 33567899999999999999999999999999999999999999999999999887332
Q ss_pred ccc----cC---CC-cchhHHHHHHHHHHhhCCCccccccccchh----------hHHH--HhhcchHHHHHHHHHhhh-
Q 003311 379 GLD----TG---TG-KSKSLQNLSMQLRKCCNHPYLFVGEYNMWR----------KEEI--IRASGKFELLDRLLPKLR- 437 (832)
Q Consensus 379 ~~~----~~---~~-~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~----------~~~l--~~~S~Kl~~L~~lL~~l~- 437 (832)
... .+ .+ ........+..||+.||||.|...+..+.. ...+ +..|+|+.+|..+|..+-
T Consensus 1245 ~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGi 1324 (1549)
T KOG0392|consen 1245 CVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGI 1324 (1549)
T ss_pred ccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCC
Confidence 221 11 11 134455667789999999999877422211 1122 678999999999998763
Q ss_pred -------------hcCCeEEEEecchhHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 438 -------------KSGHRVLLFSQMTRLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 438 -------------~~g~kvLIFsq~~~~ldiL~~~L~~---~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
..+||+|||||+.+|+|++++-|-. ..+.|.|+||++++.+|.+++++||++ ..+.|+|++|.
T Consensus 1325 g~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~D-ptIDvLlLTTh 1403 (1549)
T KOG0392|consen 1325 GNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNED-PTIDVLLLTTH 1403 (1549)
T ss_pred CCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCC-CceeEEEEeee
Confidence 2589999999999999999998854 367899999999999999999999995 45889999999
Q ss_pred ccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCc
Q 003311 502 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGL 577 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~~g~ 577 (832)
+||+||||++|||||+++.||||..++|||+|||||||++.|.||||||.||+||+|+..++.|+++++.||.+.-
T Consensus 1404 VGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqN 1479 (1549)
T KOG0392|consen 1404 VGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQN 1479 (1549)
T ss_pred ccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997643
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-73 Score=661.85 Aligned_cols=464 Identities=34% Similarity=0.520 Sum_probs=389.6
Q ss_pred CCchHHHHHHHHHHHHhhc------cCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCC----CCEEEEeCCCchHHHHHH
Q 003311 113 GELRAYQLEGLQWMLSLFN------NNLNGILADEMGLGKTIQTIALIAYLLENKGVT----GPHVIVAPKAVLPNWINE 182 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~------~~~~gILaDemGlGKTiqaiali~~l~~~~~~~----~p~LIV~P~sll~qW~~E 182 (832)
..|||||.+|+.||..... +..|||+||+||+|||+|+|++|+.++...+.. ...|||||.+++.||++|
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkE 316 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKE 316 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHH
Confidence 5999999999999998642 456789999999999999999999999887762 245999999999999999
Q ss_pred HHhhCC--CceEEEEcCChhHHHHHHHHHH---hhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHH
Q 003311 183 FSTWAP--SIAAVVYDGRPDERKAMREEFF---SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALA 257 (832)
Q Consensus 183 ~~k~~p--~~~v~~~~g~~~~r~~~~~~~~---~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~ 257 (832)
|.+|.. .+....++|...+.-.....+. ...-..-|++.+|+++..+...+....++++|+||||++||..+.+.
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~~ 396 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLTL 396 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHHH
Confidence 999975 5667777776664111111111 11134569999999999999999999999999999999999999999
Q ss_pred HHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHH--HHHHHHHHhhhhh
Q 003311 258 KTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQ--LLIIRRLHHVIRP 335 (832)
Q Consensus 258 kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~--~~~~~~L~~~L~p 335 (832)
++|..+.+++|++|||||+||++.|+|++|+|++|+++++...|...|..+.........+.++. ..-+..|..+...
T Consensus 397 kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~ 476 (776)
T KOG0390|consen 397 KALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNK 476 (776)
T ss_pred HHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999888765544444432 2337779999999
Q ss_pred hhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccc------
Q 003311 336 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVG------ 409 (832)
Q Consensus 336 fllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~------ 409 (832)
|++||+-....+.||++.++++.|.+++.|..+|..+.... .... . ..........|+++||||+|...
T Consensus 477 fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~-~---~~~~l~~~~~L~k~cnhP~L~~~~~~~~~ 551 (776)
T KOG0390|consen 477 FILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRT-L---KGYALELITKLKKLCNHPSLLLLCEKTEK 551 (776)
T ss_pred heeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhh-h---hcchhhHHHHHHHHhcCHHhhcccccccc
Confidence 99999999999999999999999999999999999998763 1110 0 01134455689999999999851
Q ss_pred cccchhhHH------------HHhhcchHHHHHHHHHhhhh-cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCH
Q 003311 410 EYNMWRKEE------------IIRASGKFELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKT 476 (832)
Q Consensus 410 ~~~~~~~~~------------l~~~S~Kl~~L~~lL~~l~~-~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~ 476 (832)
......... -..-|+|+..|..++...++ .-.++++.++++.++|+++..++++|+.++++||+|+.
T Consensus 552 e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~ 631 (776)
T KOG0390|consen 552 EKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSI 631 (776)
T ss_pred cccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCch
Confidence 000000000 11237899999999865543 34566777788999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHH
Q 003311 477 EERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEE 556 (832)
Q Consensus 477 ~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe 556 (832)
.+|+.+++.||++.++.||||+|++|||+||||.+|++||+||++|||+++.|||+||+|.||+++|+||||++.||+||
T Consensus 632 ~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEE 711 (776)
T KOG0390|consen 632 KQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEE 711 (776)
T ss_pred HHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCcCCCC
Q 003311 557 VILERAKQKMGIDAKVIQAGLFNTT 581 (832)
Q Consensus 557 ~Il~~~~~K~~l~~~vi~~g~~~~~ 581 (832)
+|++|+..|..|...|++.......
T Consensus 712 k~~qrq~~K~~lS~~v~~~~~~~~~ 736 (776)
T KOG0390|consen 712 KIYQRQTHKEGLSSMVFDEEEDVEK 736 (776)
T ss_pred HHHHHHHHhhhhhheEEeccccccc
Confidence 9999999999999999887654333
No 11
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=3.1e-73 Score=609.56 Aligned_cols=461 Identities=31% Similarity=0.466 Sum_probs=377.9
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHHHhhc-cCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHH
Q 003311 104 TEQPTLLQGGELRAYQLEGLQWMLSLFN-NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE 182 (832)
Q Consensus 104 ~~~P~~l~~~~Lr~yQ~egl~wml~~~~-~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E 182 (832)
.+||..+. ..|.|||.+||.|+..... .-.|||||||||+|||||+|+++.. + ....|+|||||...+.||.+|
T Consensus 175 aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla--e--~~ra~tLVvaP~VAlmQW~nE 249 (791)
T KOG1002|consen 175 AEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA--E--VDRAPTLVVAPTVALMQWKNE 249 (791)
T ss_pred ccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh--c--cccCCeeEEccHHHHHHHHHH
Confidence 45777665 6999999999999998765 5678899999999999999999865 2 234589999999999999999
Q ss_pred HHhhCC-CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh-----------------HHHHhhcCceEEEEe
Q 003311 183 FSTWAP-SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD-----------------RQYLKKVQWIYMIVD 244 (832)
Q Consensus 183 ~~k~~p-~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d-----------------~~~L~~~~w~~vIiD 244 (832)
+.++.. ..++.+|+|.+..... ..+ ..||||+|||..+-+. ...|..++|..||+|
T Consensus 250 I~~~T~gslkv~~YhG~~R~~ni--kel----~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlD 323 (791)
T KOG1002|consen 250 IERHTSGSLKVYIYHGAKRDKNI--KEL----MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILD 323 (791)
T ss_pred HHHhccCceEEEEEecccccCCH--HHh----hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehh
Confidence 999974 5889999997654321 222 6899999999987543 345888999999999
Q ss_pred CCcccCChhhHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChH-----------HH------------
Q 003311 245 EGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVE-----------NF------------ 301 (832)
Q Consensus 245 EaHriKN~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~-----------~F------------ 301 (832)
|||.||++.|..++++..+.+.+||+|||||+||++.|||+|+.||...+|..+- .|
T Consensus 324 EAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~ 403 (791)
T KOG1002|consen 324 EAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHN 403 (791)
T ss_pred hhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccch
Confidence 9999999999999999999999999999999999999999999999888774210 01
Q ss_pred ----HHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHhhc--CCCCeEEEEEcCCCHHHHHHHHHHHHh
Q 003311 302 ----EEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKY--LPGKSQVILKCDMSAWQKVYYQQVTDV 375 (832)
Q Consensus 302 ----~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~~~--LP~k~e~~v~~~ms~~Q~~lY~~i~~~ 375 (832)
.-||+......-.+...+.....+....|.+|..+|+||+|-.-..+ |||....+-.--++..+..+|+.+...
T Consensus 404 ~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~d 483 (791)
T KOG1002|consen 404 IMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKD 483 (791)
T ss_pred hhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHh
Confidence 11222211111112222223445566889999999999999765443 899999999899999999999999876
Q ss_pred cccccccCCCc------chhHHHHHHHHHHhhCCCcccccccc---------------------ch--------------
Q 003311 376 GRVGLDTGTGK------SKSLQNLSMQLRKCCNHPYLFVGEYN---------------------MW-------------- 414 (832)
Q Consensus 376 ~~~~~~~~~~~------~~~l~~~~~~LRk~cnhP~l~~~~~~---------------------~~-------------- 414 (832)
....++..... ...+..++.+||+++.||+|...... .+
T Consensus 484 SkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi 563 (791)
T KOG1002|consen 484 SKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCI 563 (791)
T ss_pred hHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHH
Confidence 65555443322 23456677899999999998743100 00
Q ss_pred ---------------------------------------hh--------HHHHhhcchHHHHHHHHHhhhhcC--CeEEE
Q 003311 415 ---------------------------------------RK--------EEIIRASGKFELLDRLLPKLRKSG--HRVLL 445 (832)
Q Consensus 415 ---------------------------------------~~--------~~l~~~S~Kl~~L~~lL~~l~~~g--~kvLI 445 (832)
.. ..-+..|.|+++|.+-|..+.+.. -|.||
T Consensus 564 ~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIV 643 (791)
T KOG1002|consen 564 KEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIV 643 (791)
T ss_pred HHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhh
Confidence 00 011456899999999999887654 47899
Q ss_pred EecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChh
Q 003311 446 FSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQ 525 (832)
Q Consensus 446 Fsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~ 525 (832)
||||++|+|+|.-.|...|+.++.+.|+|++..|...|+.|.+ +.++.|||+|.+|||+.|||+.|++|+++||||||+
T Consensus 644 FSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpa 722 (791)
T KOG1002|consen 644 FSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPA 722 (791)
T ss_pred HHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEeeechhceeEeecccccHH
Confidence 9999999999999999999999999999999999999999988 667999999999999999999999999999999999
Q ss_pred hHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 003311 526 MDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG 576 (832)
Q Consensus 526 ~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~~g 576 (832)
...||++|+|||||.++|+|.||+.++|||++|++.+++|.++++..|++.
T Consensus 723 Ve~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qd 773 (791)
T KOG1002|consen 723 VEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQD 773 (791)
T ss_pred HHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCc
Confidence 999999999999999999999999999999999999999999999888653
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=6.6e-72 Score=631.24 Aligned_cols=534 Identities=29% Similarity=0.460 Sum_probs=430.8
Q ss_pred CCchHHHHHHHHHHHHhh---------ccCCCeEEEcCCCCcHHHHHHHHHHHHHHh-cCCCCCEEEEeCCCchHHHHHH
Q 003311 113 GELRAYQLEGLQWMLSLF---------NNNLNGILADEMGLGKTIQTIALIAYLLEN-KGVTGPHVIVAPKAVLPNWINE 182 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~---------~~~~~gILaDemGlGKTiqaiali~~l~~~-~~~~~p~LIV~P~sll~qW~~E 182 (832)
..|+|||..||+||.... ..|.|||||+-||||||+|+|+|+..++.. +-...++|||||.+++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 499999999999998642 347789999999999999999999876643 3445689999999999999999
Q ss_pred HHhhCCCc------eEEE--EcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh---------------HHHHhhcCce
Q 003311 183 FSTWAPSI------AAVV--YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD---------------RQYLKKVQWI 239 (832)
Q Consensus 183 ~~k~~p~~------~v~~--~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d---------------~~~L~~~~w~ 239 (832)
|++|.+++ .|.- -+..+..|..+...|+... .|+|+.|++++.- ...|....++
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~g---gVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD 823 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDG---GVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPD 823 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHHHHHhcC---CEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCC
Confidence 99999852 2222 2345567777777787653 5999999998653 1234455899
Q ss_pred EEEEeCCcccCChhhHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCCh
Q 003311 240 YMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTD 319 (832)
Q Consensus 240 ~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ 319 (832)
+||+||||.|||..+.+++++..+.+.+||+|||||+||||.|++.+++|+.|+++++...|.+.|.+|+.++.....+.
T Consensus 824 ~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~ 903 (1567)
T KOG1015|consen 824 FVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTM 903 (1567)
T ss_pred eEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHH---HHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccc---cCCCcchhHHHH
Q 003311 320 EEQLLIIRR---LHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD---TGTGKSKSLQNL 393 (832)
Q Consensus 320 ee~~~~~~~---L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~---~~~~~~~~l~~~ 393 (832)
.+-..+.+| |+.+|..|+-|+--..+...||||.+++|.+.||+.|..+|+.++++....-. .+.+....|+.-
T Consensus 904 ~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d~eg~~g~~arlf~d 983 (1567)
T KOG1015|consen 904 VDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGNDSEGGRGAGARLFQD 983 (1567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCccccccchhhhHHHH
Confidence 776555544 88889999999998889999999999999999999999999999984432221 233355566666
Q ss_pred HHHHHHhhCCCcccccc-----------------cc-c-------------h---------------------h------
Q 003311 394 SMQLRKCCNHPYLFVGE-----------------YN-M-------------W---------------------R------ 415 (832)
Q Consensus 394 ~~~LRk~cnhP~l~~~~-----------------~~-~-------------~---------------------~------ 415 (832)
..-|++|.+|||...-. +. . + .
T Consensus 984 fqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~ 1063 (1567)
T KOG1015|consen 984 FQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVI 1063 (1567)
T ss_pred HHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhh
Confidence 67799999999874210 00 0 0 0
Q ss_pred ------------------------------------------------------hHHHHhhcchHHHHHHHHHhhhhcCC
Q 003311 416 ------------------------------------------------------KEEIIRASGKFELLDRLLPKLRKSGH 441 (832)
Q Consensus 416 ------------------------------------------------------~~~l~~~S~Kl~~L~~lL~~l~~~g~ 441 (832)
....+..|+|+.+|.+||....+-|.
T Consensus 1064 k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGD 1143 (1567)
T KOG1015|consen 1064 KVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGD 1143 (1567)
T ss_pred hhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcc
Confidence 00113348999999999999999999
Q ss_pred eEEEEecchhHHHHHHHHHHh----------------------CCCeEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEEE
Q 003311 442 RVLLFSQMTRLMDILEIYLKL----------------------NDFKFLRLDGSTKTEERGTLLKQFNAPDS-PYFMFLL 498 (832)
Q Consensus 442 kvLIFsq~~~~ldiL~~~L~~----------------------~g~~~~rldG~ts~~eR~~~i~~Fn~~~~-~~~v~Ll 498 (832)
|+|||||+...||+|+.||.. .|..|.+|||+++..+|+.+.+.||++.. ..++|||
T Consensus 1144 KlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LI 1223 (1567)
T KOG1015|consen 1144 KLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLI 1223 (1567)
T ss_pred eeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEE
Confidence 999999999999999999963 36679999999999999999999999765 4678999
Q ss_pred eccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCcC
Q 003311 499 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 578 (832)
Q Consensus 499 St~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~~g~~ 578 (832)
||+||++||||-+|++|||||..|||.-+.|+|-|++|.||+|+|+|||||+.||+|++||.|+--|..+...|++.-..
T Consensus 1224 STRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv 1303 (1567)
T KOG1015|consen 1224 STRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQV 1303 (1567)
T ss_pred eeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCCHHHHHHHHHHHHHhcccC-------CCCCCCCHHHHHHHHhcCHHHHHHHHHhhHHHHHhhhhcccccCcCCccc
Q 003311 579 NTTSTAQDRREMLKEIMRRGTSS-------LGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEDHEVPE 651 (832)
Q Consensus 579 ~~~~~~~~~~~~l~~il~~~~~~-------~~~~~~~~~~~~~l~~r~~~e~~~f~~~d~~~~~~~~~~~~~~~~~~~~~ 651 (832)
....+..+ |-+|..+..+- .....|-+..+.+++.-.++-+..|...|.--..++. ..|.++..-|.
T Consensus 1304 ~Rhy~~ne----LteLy~fep~~ddp~sEr~~~~lpKdrllae~l~~~q~~i~~y~ehdSll~~~e~--eelteee~k~a 1377 (1567)
T KOG1015|consen 1304 ERHYTMNE----LTELYTFEPDLDDPNSERDTPMLPKDRLLAELLQIHQEHIVGYHEHDSLLDHKEE--EELTEEERKAA 1377 (1567)
T ss_pred HHHhhHhh----hHHHhhcCCccCCcccccccccCCchhHHHHHHHHHHHHhhhhhhhhhhhcchhH--HHHHHHhhhhh
Confidence 55554444 44556655321 1122455777888887777777666665543322221 12233444566
Q ss_pred cccc
Q 003311 652 WAYS 655 (832)
Q Consensus 652 ~~~~ 655 (832)
|.-.
T Consensus 1378 Waey 1381 (1567)
T KOG1015|consen 1378 WAEY 1381 (1567)
T ss_pred hhhH
Confidence 6543
No 13
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=6.7e-69 Score=664.38 Aligned_cols=465 Identities=44% Similarity=0.707 Sum_probs=408.4
Q ss_pred cCCCCCchHHHHHHHHHHH-HhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCC-CCCEEEEeCCCchHHHHHHHHhh
Q 003311 109 LLQGGELRAYQLEGLQWML-SLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPKAVLPNWINEFSTW 186 (832)
Q Consensus 109 ~l~~~~Lr~yQ~egl~wml-~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~-~~p~LIV~P~sll~qW~~E~~k~ 186 (832)
.....+|+|||.+|++|+. .++..+.+|||||+||+|||+|+|+++.++...... .+|+|||||.+++.||.+||.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~ 412 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKF 412 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhh
Confidence 3445799999999999999 889999999999999999999999999987666555 58999999999999999999999
Q ss_pred CCCce-EEEEcCChhH----HHHHHHHHHhh-cCCccEEecCHHHHHH---hHHHHhhcCceEEEEeCCcccCChhhHHH
Q 003311 187 APSIA-AVVYDGRPDE----RKAMREEFFSE-RGRFNVLITHYDLIMR---DRQYLKKVQWIYMIVDEGHRLKNHECALA 257 (832)
Q Consensus 187 ~p~~~-v~~~~g~~~~----r~~~~~~~~~~-~~~~dVvItTye~l~~---d~~~L~~~~w~~vIiDEaHriKN~~sk~~ 257 (832)
.|.+. +..++|.... +..+....... ...+++++|||+.+.+ +...+..+.|+++|+||||++||..+..+
T Consensus 413 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~ 492 (866)
T COG0553 413 APDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEG 492 (866)
T ss_pred CccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHH
Confidence 99999 9999998753 33333322110 0138999999999999 99999999999999999999999999999
Q ss_pred HHHHccccceEEEeeccCCCCCHHHHHHHHh-ccCCCCCC-ChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhh
Q 003311 258 KTISGYQIQRRLLLTGTPIQNSLQELWSLLN-FLLPTIFN-SVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 335 (832)
Q Consensus 258 kal~~l~~~~rllLTGTPlqN~l~EL~sLl~-fL~p~~f~-~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~p 335 (832)
+++..+++.++++|||||++|++.|||++++ |+.|..++ +...|..||..+......... .+.....+.+|+.+++|
T Consensus 493 ~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~i~~ 571 (866)
T COG0553 493 KALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP-LEARELGIELLRKLLSP 571 (866)
T ss_pred HHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc-hhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 558999999998776543322 23344556669999999
Q ss_pred hhhhhhHhH--HhhcCCCCeEEEEEcCCCHHHHHHHHHHHH---hcccccccC---CC-------cchhHHHHHHHHHHh
Q 003311 336 FILRRKKDE--VEKYLPGKSQVILKCDMSAWQKVYYQQVTD---VGRVGLDTG---TG-------KSKSLQNLSMQLRKC 400 (832)
Q Consensus 336 fllRR~k~d--v~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~---~~~~~~~~~---~~-------~~~~l~~~~~~LRk~ 400 (832)
|++||+|.+ +...||++.+.++.|+++..|..+|..... .....+... .. ....+.+.+++||++
T Consensus 572 f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~ 651 (866)
T COG0553 572 FILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQI 651 (866)
T ss_pred HhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 999999999 888999999999999999999999999888 433332221 11 145677888999999
Q ss_pred hCCCcccccc-ccch---------------hhHHHHhhc-chHHHHHHHH-HhhhhcCC--eEEEEecchhHHHHHHHHH
Q 003311 401 CNHPYLFVGE-YNMW---------------RKEEIIRAS-GKFELLDRLL-PKLRKSGH--RVLLFSQMTRLMDILEIYL 460 (832)
Q Consensus 401 cnhP~l~~~~-~~~~---------------~~~~l~~~S-~Kl~~L~~lL-~~l~~~g~--kvLIFsq~~~~ldiL~~~L 460 (832)
|+||+++... .... ....++..+ +|+..+.+++ ..+...|+ ++|||+||+.++++|+.+|
T Consensus 652 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l 731 (866)
T COG0553 652 CNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYL 731 (866)
T ss_pred ccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHH
Confidence 9999999876 2211 122355677 9999999999 89999999 9999999999999999999
Q ss_pred HhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCc
Q 003311 461 KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQK 540 (832)
Q Consensus 461 ~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~ 540 (832)
...++.|+++||+++...|..+++.|+++ ...+||++|++|||.||||+.|++||+||+||||+.+.||++|||||||+
T Consensus 732 ~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~ 810 (866)
T COG0553 732 KALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQK 810 (866)
T ss_pred HhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999997 56789999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q 003311 541 KEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 575 (832)
Q Consensus 541 k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~~ 575 (832)
++|.||+|++.+|+||+|+.++..|+.+...++++
T Consensus 811 ~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 811 RPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred ceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999986
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1e-68 Score=595.67 Aligned_cols=466 Identities=28% Similarity=0.472 Sum_probs=388.3
Q ss_pred ccccCCCcCCCCCchHHHHHHHHHHHHhhcc-CCCeEEEcCCCCcHHHHHHHHHHHHHHhc-------CCCCCEEEEeCC
Q 003311 102 KVTEQPTLLQGGELRAYQLEGLQWMLSLFNN-NLNGILADEMGLGKTIQTIALIAYLLENK-------GVTGPHVIVAPK 173 (832)
Q Consensus 102 ~~~~~P~~l~~~~Lr~yQ~egl~wml~~~~~-~~~gILaDemGlGKTiqaiali~~l~~~~-------~~~~p~LIV~P~ 173 (832)
.+++.|..+. ..|.|||..|+.||+.+..+ +.+|||||+||+|||+++|++|.+-.... ....++|||||.
T Consensus 314 ~lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa 392 (901)
T KOG4439|consen 314 DLTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA 392 (901)
T ss_pred cccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH
Confidence 3555666654 79999999999999987544 56789999999999999999997654321 223379999999
Q ss_pred CchHHHHHHHHhhCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHH----------hHHHHhhcCceEE
Q 003311 174 AVLPNWINEFSTWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMR----------DRQYLKKVQWIYM 241 (832)
Q Consensus 174 sll~qW~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~----------d~~~L~~~~w~~v 241 (832)
+++.||..|+.+-.. .+.|++|+|... |..-...+ ..||||||||..+.+ ....|..+.|.+|
T Consensus 393 Sli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i~~~~L----~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RV 467 (901)
T KOG4439|consen 393 SLIHQWEAEVARRLEQNALSVYLYHGPNK-REISAKEL----RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRV 467 (901)
T ss_pred HHHHHHHHHHHHHHhhcceEEEEecCCcc-ccCCHHHH----hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHh
Confidence 999999999998763 478999999874 22212222 689999999999876 2456888999999
Q ss_pred EEeCCcccCChhhHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHH
Q 003311 242 IVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEE 321 (832)
Q Consensus 242 IiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee 321 (832)
|+||||.|+|+.++.+.+++.+.+..||+|||||+||++-|+|+|+.||+..+|++...|++++..+...
T Consensus 468 ILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~---------- 537 (901)
T KOG4439|consen 468 ILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKG---------- 537 (901)
T ss_pred hhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCcccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999998755332
Q ss_pred HHHHHHHHHhhhhhhhhhhhHhHHhh-----cCCCCeEEEEEcCCCHHHHHHHHHHHHhccccccc------------C-
Q 003311 322 QLLIIRRLHHVIRPFILRRKKDEVEK-----YLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT------------G- 383 (832)
Q Consensus 322 ~~~~~~~L~~~L~pfllRR~k~dv~~-----~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~------------~- 383 (832)
...+|.=+.++.||||+|..... .||.+...++.++|+..+...|+-+.+..+..+.. +
T Consensus 538 ---g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~ 614 (901)
T KOG4439|consen 538 ---GANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGY 614 (901)
T ss_pred ---chhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCc
Confidence 24567778899999999998876 79999999999999999999999877643322210 0
Q ss_pred ---------------------------C--CcchhHHHHHHHHHHhhCCCccccccccchh-------------------
Q 003311 384 ---------------------------T--GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR------------------- 415 (832)
Q Consensus 384 ---------------------------~--~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~------------------- 415 (832)
. .....+..++++||++|+||.+.....++..
T Consensus 615 ~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l 694 (901)
T KOG4439|consen 615 QSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNL 694 (901)
T ss_pred cccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHH
Confidence 0 0112356678899999999966543211100
Q ss_pred -----------------------hH---HHHhhcchHHHHHHHHHhh-hhcCCeEEEEecchhHHHHHHHHHHhCCCeEE
Q 003311 416 -----------------------KE---EIIRASGKFELLDRLLPKL-RKSGHRVLLFSQMTRLMDILEIYLKLNDFKFL 468 (832)
Q Consensus 416 -----------------------~~---~l~~~S~Kl~~L~~lL~~l-~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ 468 (832)
.. +..+.|.|+..+..++..+ .....|++|.||++.++++++..|...|+.|.
T Consensus 695 ~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~ 774 (901)
T KOG4439|consen 695 AELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYT 774 (901)
T ss_pred HhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeee
Confidence 00 1123588999999998887 56789999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEE
Q 003311 469 RLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVL 548 (832)
Q Consensus 469 rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rL 548 (832)
.++|....++|+.+++.||.......|+|+|..|||+||||..|+++|++|..|||+-+.||.+|++|+||+|+|.||||
T Consensus 775 si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~ 854 (901)
T KOG4439|consen 775 SITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRL 854 (901)
T ss_pred eecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEE
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHhcCcC--CCCCCHHH
Q 003311 549 VSVGSIEEVILERAKQKMGIDAKVIQAGLF--NTTSTAQD 586 (832)
Q Consensus 549 it~~siEe~Il~~~~~K~~l~~~vi~~g~~--~~~~~~~~ 586 (832)
++.+|||++|...+..|++++..|+.+... .+..+..+
T Consensus 855 ~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~ad 894 (901)
T KOG4439|consen 855 MCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLAD 894 (901)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHH
Confidence 999999999999999999999999985432 23444444
No 15
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-60 Score=530.84 Aligned_cols=478 Identities=29% Similarity=0.497 Sum_probs=386.4
Q ss_pred CCchHHHHHHHHHHHHh-------h--ccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHH
Q 003311 113 GELRAYQLEGLQWMLSL-------F--NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 183 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~-------~--~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 183 (832)
.-++|||+-||+||... | ..+.|||||+.||||||+|.|+++.-++.+.. .+.+|+|+|.+++.||..||
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~-AKtVL~ivPiNTlQNWlsEf 331 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTK-AKTVLVIVPINTLQNWLSEF 331 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCc-cceEEEEEehHHHHHHHHHh
Confidence 47899999999998742 2 34778999999999999999999988877654 45899999999999999999
Q ss_pred HhhCCC-----------ceEEEEcC---ChhHHHHHHHHHHhhcCCccEEecCHHHHHHh--------------------
Q 003311 184 STWAPS-----------IAAVVYDG---RPDERKAMREEFFSERGRFNVLITHYDLIMRD-------------------- 229 (832)
Q Consensus 184 ~k~~p~-----------~~v~~~~g---~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d-------------------- 229 (832)
..|.|. +.|.+... +-..|......|... -.|+++.|++++--
T Consensus 332 nmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~---GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~ 408 (1387)
T KOG1016|consen 332 NMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQT---GGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISS 408 (1387)
T ss_pred hhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhcc---CCEEEehHHHHHHHHHhcccccCCccccccccCC
Confidence 999875 23444332 334566666667654 34999999987421
Q ss_pred ------------------HHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhccC
Q 003311 230 ------------------RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLL 291 (832)
Q Consensus 230 ------------------~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~ 291 (832)
...|.+-..++||+||+|||||.....+.+|+.+++++|+.|||-|+|||+-|+|.+++|+.
T Consensus 409 ~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVR 488 (1387)
T KOG1016|consen 409 GFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVR 488 (1387)
T ss_pred cccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheecc
Confidence 12344557899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHhcccccccCcccCChHHHHHHHH---HHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHH
Q 003311 292 PTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIR---RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVY 368 (832)
Q Consensus 292 p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~---~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~l 368 (832)
|+.+++...|...|..|+.++..+..++.+-..+.. -||.+|..|+.||+...+...||.+.|+++.+.||..|+++
T Consensus 489 P~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~L 568 (1387)
T KOG1016|consen 489 PKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQL 568 (1387)
T ss_pred ccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHH
Confidence 999999999999999999999999999988665544 48999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccc-------------------------------------
Q 003311 369 YQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY------------------------------------- 411 (832)
Q Consensus 369 Y~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~------------------------------------- 411 (832)
|..+...............-.....+.-..|+.|||-+...-.
T Consensus 569 Y~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~ 648 (1387)
T KOG1016|consen 569 YRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPST 648 (1387)
T ss_pred HHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCC
Confidence 9998744333222111111112223334556668886542100
Q ss_pred -----------------------------------cchh-------hHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecc
Q 003311 412 -----------------------------------NMWR-------KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQM 449 (832)
Q Consensus 412 -----------------------------------~~~~-------~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~ 449 (832)
..|. ...++..++|+..+.+++..-...|.++|||||.
T Consensus 649 ~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~ 728 (1387)
T KOG1016|consen 649 PLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIFSQN 728 (1387)
T ss_pred cccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEeecc
Confidence 0000 0111233556666666666666778999999999
Q ss_pred hhHHHHHHHHHHhC------------------CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCccc
Q 003311 450 TRLMDILEIYLKLN------------------DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT 511 (832)
Q Consensus 450 ~~~ldiL~~~L~~~------------------g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ 511 (832)
...+|.|+.+|..+ ...|++++|.++..+|+++|++||.+.+-.+.||+||+||..||||-.
T Consensus 729 l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIs 808 (1387)
T KOG1016|consen 729 LTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLIS 808 (1387)
T ss_pred hhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeec
Confidence 99999999999754 346999999999999999999999977666799999999999999999
Q ss_pred CCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCHHHHHHHH
Q 003311 512 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREML 591 (832)
Q Consensus 512 ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~~g~~~~~~~~~~~~~~l 591 (832)
|+.+|+||..|||..+.||++|++|.||+|+|.|||||+.+++|.+|+.|+..|+.+...|++.-.-+...+..+ +
T Consensus 809 anr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~an~s~Ke----~ 884 (1387)
T KOG1016|consen 809 ANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDANISQKE----L 884 (1387)
T ss_pred cceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccccccHHH----H
Confidence 999999999999999999999999999999999999999999999999999999999999998765555555444 4
Q ss_pred HHHHHhc
Q 003311 592 KEIMRRG 598 (832)
Q Consensus 592 ~~il~~~ 598 (832)
+.||...
T Consensus 885 enLl~~~ 891 (1387)
T KOG1016|consen 885 ENLLMYD 891 (1387)
T ss_pred HHHhhhh
Confidence 4555443
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=6.1e-57 Score=485.37 Aligned_cols=418 Identities=27% Similarity=0.380 Sum_probs=328.0
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceE-
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAA- 192 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v- 192 (832)
.|.|||.+||.+.+. .+++.+||||||||||+|||+++.++... +|.|||||.++...|.+++.+|+|....
T Consensus 198 ~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyraE----wplliVcPAsvrftWa~al~r~lps~~pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRAE----WPLLIVCPASVRFTWAKALNRFLPSIHPI 270 (689)
T ss_pred hhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhhc----CcEEEEecHHHhHHHHHHHHHhcccccce
Confidence 799999999999886 56677999999999999999999888765 4999999999999999999999997554
Q ss_pred EEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc--ccceEEE
Q 003311 193 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY--QIQRRLL 270 (832)
Q Consensus 193 ~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l--~~~~rll 270 (832)
.+..+..+.-..+ .....|.|+||+.+......|..-+|.+||+||+|++|+..++..+++..+ .+.|.|+
T Consensus 271 ~vv~~~~D~~~~~-------~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvIL 343 (689)
T KOG1000|consen 271 FVVDKSSDPLPDV-------CTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVIL 343 (689)
T ss_pred EEEecccCCcccc-------ccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEE
Confidence 2333322211000 023459999999999999999999999999999999999999999998665 6889999
Q ss_pred eeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhh-hhhhhhhHhHHhhcC
Q 003311 271 LTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIR-PFILRRKKDEVEKYL 349 (832)
Q Consensus 271 LTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~-pfllRR~k~dv~~~L 349 (832)
|||||--.++.|||.++..+++.+|..+..|-..|+..-......+.. .-.....|+-+|. -.|+||+|.+|..+|
T Consensus 344 LSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dyk---g~tnl~EL~~lL~k~lMIRRlK~dvL~qL 420 (689)
T KOG1000|consen 344 LSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYK---GCTNLEELAALLFKRLMIRRLKADVLKQL 420 (689)
T ss_pred ecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecC---CCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999988887643322111110 0112344666664 458999999999999
Q ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHH
Q 003311 350 PGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELL 429 (832)
Q Consensus 350 P~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L 429 (832)
|+|...++.+ ....+...-..+........ +.. .|+-.+.|-- ++. ....-.|+..+
T Consensus 421 PpKrr~Vv~~-~~gr~da~~~~lv~~a~~~t-----~~~-----~~e~~~~~l~--l~y----------~~tgiaK~~av 477 (689)
T KOG1000|consen 421 PPKRREVVYV-SGGRIDARMDDLVKAAADYT-----KVN-----SMERKHESLL--LFY----------SLTGIAKAAAV 477 (689)
T ss_pred CccceEEEEE-cCCccchHHHHHHHHhhhcc-----hhh-----hhhhhhHHHH--HHH----------HHhcccccHHH
Confidence 9996555543 23333333333332221100 000 0010111100 000 01234566666
Q ss_pred HHHHHh----hhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccccc
Q 003311 430 DRLLPK----LRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL 505 (832)
Q Consensus 430 ~~lL~~----l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~ 505 (832)
.+.|.. ..+.+.|+|||++++.++|-|+.++..+++..+||||+|+..+|..+++.|+. +..+.|-++|..|+|+
T Consensus 478 ~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~-seev~VAvlsItA~gv 556 (689)
T KOG1000|consen 478 CEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQT-SEEVRVAVLSITAAGV 556 (689)
T ss_pred HHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhcc-ccceEEEEEEEeeccc
Confidence 666655 45778999999999999999999999999999999999999999999999998 4568899999999999
Q ss_pred ccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 003311 506 GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKV 572 (832)
Q Consensus 506 GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~v 572 (832)
||+|++|+.|+|.+.+|||...+||.+|||||||+..|.||+||+++|+|+.++..+.+|++....+
T Consensus 557 GLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~ 623 (689)
T KOG1000|consen 557 GLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSV 623 (689)
T ss_pred ceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999887765
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.6e-56 Score=536.63 Aligned_cols=432 Identities=21% Similarity=0.265 Sum_probs=324.9
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCce
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 191 (832)
...|.|||..++.+++..+ ..+.|||||||||||++|++++..++.. +..+|+|||||.+|+.||..|+.+|+ ++.
T Consensus 150 ~~~l~pHQl~~~~~vl~~~--~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~rvLIVvP~sL~~QW~~El~~kF-~l~ 225 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRH--APRVLLADEVGLGKTIEAGMIIHQQLLT-GRAERVLILVPETLQHQWLVEMLRRF-NLR 225 (956)
T ss_pred CCCCCHHHHHHHHHHhhcc--CCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCCcEEEEcCHHHHHHHHHHHHHHh-CCC
Confidence 3579999999998876643 5667999999999999999999888765 44579999999999999999998887 355
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH---HHHhhcCceEEEEeCCcccCCh---hhHHHHHHHcc--
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR---QYLKKVQWIYMIVDEGHRLKNH---ECALAKTISGY-- 263 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~---~~L~~~~w~~vIiDEaHriKN~---~sk~~kal~~l-- 263 (832)
+.++.+....... ..-......++++|+||+.+.++. ..+....|++|||||||++++. .|+.++.+..+
T Consensus 226 ~~i~~~~~~~~~~--~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~ 303 (956)
T PRK04914 226 FSLFDEERYAEAQ--HDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE 303 (956)
T ss_pred eEEEcCcchhhhc--ccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh
Confidence 5666554321110 000011235789999999998754 4566779999999999999953 45667777766
Q ss_pred ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcc--cccc-----cCcccCChHH---------------
Q 003311 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNA--PFKD-----RGQVALTDEE--------------- 321 (832)
Q Consensus 264 ~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~--~~~~-----~~~~~~~~ee--------------- 321 (832)
.+.++|+|||||++|+..++|++|+||+|+.|++...|.+.... +... ......+...
T Consensus 304 ~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 383 (956)
T PRK04914 304 VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEP 383 (956)
T ss_pred ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhH
Confidence 57899999999999999999999999999999999999765432 1100 0000001100
Q ss_pred ---------------HHHHHHHHHh--hhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHH-HHHhcccccccC
Q 003311 322 ---------------QLLIIRRLHH--VIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQ-VTDVGRVGLDTG 383 (832)
Q Consensus 322 ---------------~~~~~~~L~~--~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~-i~~~~~~~~~~~ 383 (832)
....+..|.. -..++|+|+++.+|.. +|.+....+.+++.+.....+.. ..
T Consensus 384 l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~-fp~R~~~~~~l~~~~~y~~~~~~~~~---------- 452 (956)
T PRK04914 384 LLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKG-FPKRELHPIPLPLPEQYQTAIKVSLE---------- 452 (956)
T ss_pred HHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcC-CCcCceeEeecCCCHHHHHHHHHhHH----------
Confidence 0111111111 1237889999999875 89999999999987653333321 00
Q ss_pred CCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHH-Hh
Q 003311 384 TGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL-KL 462 (832)
Q Consensus 384 ~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L-~~ 462 (832)
..+++ +.+|......+. .....+..++|+..|.++|.... +.|+||||++..+++.|...| ..
T Consensus 453 -----------~~~~~-~l~pe~~~~~~~--~~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~~ 516 (956)
T PRK04914 453 -----------ARARD-MLYPEQIYQEFE--DNATWWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATALQLEQALRER 516 (956)
T ss_pred -----------HHHHh-hcCHHHHHHHHh--hhhhccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhhc
Confidence 01111 222211100000 00112345689999999998753 789999999999999999999 56
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCc
Q 003311 463 NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 542 (832)
Q Consensus 463 ~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~ 542 (832)
.|+++..+||+++..+|.++++.|+.++..+. +||||.+||+|+|++.|++||+||+||||..++||+||+||+||+++
T Consensus 517 ~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~-VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~ 595 (956)
T PRK04914 517 EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQ-VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHD 595 (956)
T ss_pred cCeeEEEEECCCCHHHHHHHHHHHhcCCCCcc-EEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCce
Confidence 79999999999999999999999998543343 57889999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCc
Q 003311 543 VRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGL 577 (832)
Q Consensus 543 V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~~g~ 577 (832)
|.||.+++++|+++.|+.....|+++...++..|.
T Consensus 596 V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~ 630 (956)
T PRK04914 596 IQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGR 630 (956)
T ss_pred EEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHH
Confidence 99999999999999999999999988887765543
No 18
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=9.7e-57 Score=517.52 Aligned_cols=390 Identities=45% Similarity=0.728 Sum_probs=357.0
Q ss_pred cccCCCcCC--CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHH
Q 003311 103 VTEQPTLLQ--GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 180 (832)
Q Consensus 103 ~~~~P~~l~--~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~ 180 (832)
...||..+. ++.|.+||.+|++|+...+..+.++|||||||+|||++++.++..+.......+|+||++|.+++.+|.
T Consensus 282 ~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe 361 (696)
T KOG0383|consen 282 YEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWE 361 (696)
T ss_pred cccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCC
Confidence 346777765 589999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred HHHHhhCCCceEEEEcCChhHHHHHHHHHHh------------------hcCCccEEecCHHHHHHhHHHHhhcCceEEE
Q 003311 181 NEFSTWAPSIAAVVYDGRPDERKAMREEFFS------------------ERGRFNVLITHYDLIMRDRQYLKKVQWIYMI 242 (832)
Q Consensus 181 ~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~------------------~~~~~dVvItTye~l~~d~~~L~~~~w~~vI 242 (832)
.|+..|+|...++.|.|+...|..++...+. ....|+|.+++|+++..+...+..+.|.++|
T Consensus 362 ~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~li 441 (696)
T KOG0383|consen 362 REFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLI 441 (696)
T ss_pred CchhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeE
Confidence 9999999999999999999988776643221 1246899999999999999999999999999
Q ss_pred EeCCcccCChhhHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHH
Q 003311 243 VDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQ 322 (832)
Q Consensus 243 iDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~ 322 (832)
+||+||++|..++++..+..++..++++|||||+||++.+|+++|+||.|..|++...|.+.|... -.
T Consensus 442 vde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~------------~~ 509 (696)
T KOG0383|consen 442 VDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI------------SC 509 (696)
T ss_pred eechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh------------hH
Confidence 999999999999999999999999999999999999999999999999999999999888877543 23
Q ss_pred HHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhC
Q 003311 323 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402 (832)
Q Consensus 323 ~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cn 402 (832)
...+..||.++.|+++||.|.||.+.+|.|.+.++.+.|++.|+++|+.+...+-..+.. .+....+.|++|+|||+|+
T Consensus 510 ~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-~~~~~s~~n~~mel~K~~~ 588 (696)
T KOG0383|consen 510 EEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-GVHQYSLLNIVMELRKQCN 588 (696)
T ss_pred HHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-cchhHHHHHHHHHHHHhhc
Confidence 455889999999999999999999999999999999999999999999999887776665 4466789999999999999
Q ss_pred CCcccccccc-----chhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHH
Q 003311 403 HPYLFVGEYN-----MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTE 477 (832)
Q Consensus 403 hP~l~~~~~~-----~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~ 477 (832)
|||++..... .+....++.+++|+.+|..++++++..||||+||+||+.++|+|++++...+ .|.|+||..+..
T Consensus 589 hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~ 667 (696)
T KOG0383|consen 589 HPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGP 667 (696)
T ss_pred CcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccch
Confidence 9999987322 2345678899999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHhhcCCCCCceEEEEeccccccc
Q 003311 478 ERGTLLKQFNAPDSPYFMFLLSTRAGGLG 506 (832)
Q Consensus 478 eR~~~i~~Fn~~~~~~~v~LlSt~agg~G 506 (832)
+|+.+|++||.+++..|+||+||+|||+|
T Consensus 668 ~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 668 ERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999999999999999999998
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6.6e-53 Score=492.81 Aligned_cols=438 Identities=29% Similarity=0.464 Sum_probs=357.8
Q ss_pred HHHHHHHHHHHHhh-ccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC------CCCCEEEEeCCCchHHHHHHHHhhCC-
Q 003311 117 AYQLEGLQWMLSLF-NNNLNGILADEMGLGKTIQTIALIAYLLENKG------VTGPHVIVAPKAVLPNWINEFSTWAP- 188 (832)
Q Consensus 117 ~yQ~egl~wml~~~-~~~~~gILaDemGlGKTiqaiali~~l~~~~~------~~~p~LIV~P~sll~qW~~E~~k~~p- 188 (832)
.+|..+..|+.... ..-.+||+||+||+|||+++|+++........ ..+.+|||||.+++.||..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 45555444444432 33457899999999999999999865544333 45678999999999999999966653
Q ss_pred -CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccce
Q 003311 189 -SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR 267 (832)
Q Consensus 189 -~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~ 267 (832)
.+.+.+|+| |.... ....+++||||||.++.. ..+..+.|.+||+||||.++|.+++.++++..+.+.+
T Consensus 215 ~~l~v~v~~g----r~kd~----~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~ 284 (674)
T KOG1001|consen 215 DKLSIYVYHG----RTKDK----SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKY 284 (674)
T ss_pred cceEEEEecc----ccccc----chhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeeccce
Confidence 467888888 21111 112688999999999976 5566799999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHh-
Q 003311 268 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVE- 346 (832)
Q Consensus 268 rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~- 346 (832)
||+|||||+||++.++|+++.|+.-.++.....|...+..|+..... .....++..+|.++++||+|....
T Consensus 285 RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~--------~~~~k~l~~~L~~v~lrrtK~~~~~ 356 (674)
T KOG1001|consen 285 RWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY--------KEGVKTLQGILKKVMLRRTKEMEVD 356 (674)
T ss_pred eeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH--------HHHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999888887654321 345788899999999999997332
Q ss_pred ----hcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCC------cchhHHHHHHHHHHhhCCCccccccccch--
Q 003311 347 ----KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTG------KSKSLQNLSMQLRKCCNHPYLFVGEYNMW-- 414 (832)
Q Consensus 347 ----~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~------~~~~l~~~~~~LRk~cnhP~l~~~~~~~~-- 414 (832)
..||++...++.+.++..++.+|..+.......+..... ....+...+.+||++|+||+++.......
T Consensus 357 gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~ 436 (674)
T KOG1001|consen 357 GKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGD 436 (674)
T ss_pred CccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhcccc
Confidence 369999999999999999999999998776654432221 12345556678999999999875311000
Q ss_pred -------h--------------------------------------------------------hHHHHh----------
Q 003311 415 -------R--------------------------------------------------------KEEIIR---------- 421 (832)
Q Consensus 415 -------~--------------------------------------------------------~~~l~~---------- 421 (832)
. ...++.
T Consensus 437 ~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~ 516 (674)
T KOG1001|consen 437 SGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIIND 516 (674)
T ss_pred ccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhh
Confidence 0 001111
Q ss_pred ---hcchHHHHHHHHHhhhhcCC-eEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 422 ---ASGKFELLDRLLPKLRKSGH-RVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 422 ---~S~Kl~~L~~lL~~l~~~g~-kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
.|.|+..+.++|.....+.. ++|||||++.++++++..|...++.+.+++|.++...|.+.+..|+. +....|++
T Consensus 517 ~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~-~~~~~vll 595 (674)
T KOG1001|consen 517 LLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPC-DPLVTALL 595 (674)
T ss_pred ccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhccccc-CccHHHHH
Confidence 15567777777775554444 99999999999999999999999999999999999999999999994 56678999
Q ss_pred EeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Q 003311 498 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVI 573 (832)
Q Consensus 498 lSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi 573 (832)
+|.+|||.||||+.|++||++||+|||..+.||++|||||||+++|.|+||++.+|+|++|+..+++|+.+...+.
T Consensus 596 ~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~ 671 (674)
T KOG1001|consen 596 MSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAF 671 (674)
T ss_pred HHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998877654
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=9.6e-44 Score=385.67 Aligned_cols=277 Identities=39% Similarity=0.701 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHhh---------ccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCC--CCEEEEeCCCchHHHHHHHHhh
Q 003311 118 YQLEGLQWMLSLF---------NNNLNGILADEMGLGKTIQTIALIAYLLENKGVT--GPHVIVAPKAVLPNWINEFSTW 186 (832)
Q Consensus 118 yQ~egl~wml~~~---------~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~--~p~LIV~P~sll~qW~~E~~k~ 186 (832)
||++||.||+.++ ....+||||||||+|||+++++++.++....... .++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7788899999999999999999999888765443 3699999999999999999999
Q ss_pred C-C-CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHH-----HhHHHHhhcCceEEEEeCCcccCChhhHHHHH
Q 003311 187 A-P-SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIM-----RDRQYLKKVQWIYMIVDEGHRLKNHECALAKT 259 (832)
Q Consensus 187 ~-p-~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~-----~d~~~L~~~~w~~vIiDEaHriKN~~sk~~ka 259 (832)
+ | ...+++|.|....+.. .......++|+|+||+.+. .....+...+|++|||||+|+++|..+..+++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~ 156 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRL----SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKA 156 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHT----TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHH
T ss_pred cccccccccccccccccccc----cccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccc
Confidence 9 4 6889999887722221 1122367899999999999 77788888999999999999999999999999
Q ss_pred HHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhh
Q 003311 260 ISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339 (832)
Q Consensus 260 l~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllR 339 (832)
+..+.+.++|+|||||++|++.|+|++++||.|..+.....|.++|..+ ..........+|..++.++++|
T Consensus 157 l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~---------~~~~~~~~~~~L~~~l~~~~~r 227 (299)
T PF00176_consen 157 LRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP---------DKENSYENIERLRELLSEFMIR 227 (299)
T ss_dssp HHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH---------HHTHHHHHHHHHHHHHCCCEEC
T ss_pred ccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh---------ccccccccccccccccchhhhh
Confidence 9999999999999999999999999999999999999999999988655 1123455678899999999999
Q ss_pred hhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCC----CcchhHHHHHHHHHHhhCCCccc
Q 003311 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT----GKSKSLQNLSMQLRKCCNHPYLF 407 (832)
Q Consensus 340 R~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~----~~~~~l~~~~~~LRk~cnhP~l~ 407 (832)
|++.++...+|+..+.++.|+||+.|+.+|+.+.......+.... .....+...+++||++|+||+|.
T Consensus 228 ~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 228 RTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp HCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred hhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 999999888999999999999999999999998887776655433 33456788889999999999873
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.4e-41 Score=393.76 Aligned_cols=379 Identities=19% Similarity=0.324 Sum_probs=271.2
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCC-chHHHHHHHHhhC--C
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA-VLPNWINEFSTWA--P 188 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~--p 188 (832)
...|||||.+++.++.. .....+|||+++||+|||++++++++.+ .+++|||||.. ++.||.++|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~~-~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHh-cCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 57999999999998864 1112589999999999999999888755 35899999975 5899999999996 3
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh----------HHHHhhcCceEEEEeCCcccCChhhHHHH
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD----------RQYLKKVQWIYMIVDEGHRLKNHECALAK 258 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d----------~~~L~~~~w~~vIiDEaHriKN~~sk~~k 258 (832)
...+..|.|...... .....|+|+||+++.+. ...|....|++||+||||++.+ ....+
T Consensus 326 ~~~I~~~tg~~k~~~---------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~ 394 (732)
T TIGR00603 326 DSQICRFTSDAKERF---------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFRR 394 (732)
T ss_pred CceEEEEecCccccc---------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHHH
Confidence 456667777543210 03467999999998643 2345556899999999999954 44556
Q ss_pred HHHccccceEEEeeccCCCCCHHHHHHHHhc-cCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 003311 259 TISGYQIQRRLLLTGTPIQNSLQELWSLLNF-LLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337 (832)
Q Consensus 259 al~~l~~~~rllLTGTPlqN~l~EL~sLl~f-L~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfl 337 (832)
++..+.+.+||+|||||++++- .+..+.+ +.|.+|..
T Consensus 395 il~~l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye~---------------------------------------- 432 (732)
T TIGR00603 395 VLTIVQAHCKLGLTATLVREDD--KITDLNFLIGPKLYEA---------------------------------------- 432 (732)
T ss_pred HHHhcCcCcEEEEeecCcccCC--chhhhhhhcCCeeeec----------------------------------------
Confidence 7778899999999999998763 3444444 34443321
Q ss_pred hhhhHhHH--hhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchh
Q 003311 338 LRRKKDEV--EKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 415 (832)
Q Consensus 338 lRR~k~dv--~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~ 415 (832)
.-.++ ...|.+.....++|+|++.....|...... .+ ..| +
T Consensus 433 ---~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~-----------~k------~~l--~--------------- 475 (732)
T TIGR00603 433 ---NWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSR-----------KR------MLL--Y--------------- 475 (732)
T ss_pred ---CHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcch-----------hh------hHH--h---------------
Confidence 11111 134666777889999998754444221100 00 000 0
Q ss_pred hHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceE
Q 003311 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 495 (832)
Q Consensus 416 ~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v 495 (832)
..+..|+..+..++......|+++||||+++..++.+...| +. ..++|.|+..+|..++++|+.+.. +.
T Consensus 476 ----~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~-i~- 544 (732)
T TIGR00603 476 ----VMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPK-VN- 544 (732)
T ss_pred ----hhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCC-cc-
Confidence 12456889998888877678999999999998888887766 33 458999999999999999986422 22
Q ss_pred EEEeccccccccCcccCCeEEEeCCCC-ChhhHHHHhhhccccCCcCc-----EEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 003311 496 FLLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKE-----VRVFVLVSVGSIEEVILERAKQKMGID 569 (832)
Q Consensus 496 ~LlSt~agg~GLNL~~ad~VI~~D~~w-Np~~~~QAigRahRiGQ~k~-----V~V~rLit~~siEe~Il~~~~~K~~l~ 569 (832)
+|+++++|++||||+.|++||++++++ |+.++.||+||+.|.+..+. ..+|.||+.+|.|+..-.+-++ -|.
T Consensus 545 vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~--fl~ 622 (732)
T TIGR00603 545 TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQR--FLV 622 (732)
T ss_pred EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHH--HHH
Confidence 567779999999999999999999986 99999999999999997654 7999999999999887543222 221
Q ss_pred H-----HHH-h-cCcC----CCCCCHHHHHHHHHHHHHhccc
Q 003311 570 A-----KVI-Q-AGLF----NTTSTAQDRREMLKEIMRRGTS 600 (832)
Q Consensus 570 ~-----~vi-~-~g~~----~~~~~~~~~~~~l~~il~~~~~ 600 (832)
. +|| + .+.. -.-++..++.++|+.+|..+..
T Consensus 623 ~qGY~~~vi~~~~~~~~~~~l~~~~~~~~~~ll~~~l~~~~~ 664 (732)
T TIGR00603 623 DQGYSFKVITHLPGMDNESNLAYSSKEEQLELLQKVLLAGDL 664 (732)
T ss_pred HCCCeeEEEecCcccccccccccCCHHHHHHHHHHHHhCccc
Confidence 1 111 0 0111 0134556777788887765443
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.6e-36 Score=367.13 Aligned_cols=433 Identities=20% Similarity=0.220 Sum_probs=283.9
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCC--
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS-- 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~-- 189 (832)
.++|+||.+.+..++. .++|++++||+|||++++.++..++. ...+++|||||. .++.||..++.+++..
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 4899999999887764 38999999999999999888887764 235689999997 7889999999988643
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH--HHhhcCceEEEEeCCcccCChhhHHHHHH---Hccc
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHECALAKTI---SGYQ 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~--~L~~~~w~~vIiDEaHriKN~~sk~~kal---~~l~ 264 (832)
..+..+.|...... +...+ ...+|+|+|++.+..+.. .+....|++|||||||++.+..+....+- ....
T Consensus 87 ~~v~~~~g~~~~~~--r~~~~---~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~ 161 (773)
T PRK13766 87 EKIVVFTGEVSPEK--RAELW---EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK 161 (773)
T ss_pred ceEEEEeCCCCHHH--HHHHH---hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCC
Confidence 47777777543321 11122 457899999999987642 23334789999999999986544332222 2224
Q ss_pred cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChH----HHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 003311 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVE----NFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340 (832)
Q Consensus 265 ~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~----~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR 340 (832)
..++++|||||.++ ...+..+++-|....+.... .+...+..+......+.+++. ...++..|.+++.++
T Consensus 162 ~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~-----~~~i~~~l~~~~~~~ 235 (773)
T PRK13766 162 NPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEE-----LKEIRDLLNEALKDR 235 (773)
T ss_pred CCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHH-----HHHHHHHHHHHHHHH
Confidence 55699999999765 55666666655433222111 222222211111111222222 455677778887777
Q ss_pred hHhHHhhc-CCCCeEEEEEcCCCHHHHHHHHHHHHhccccccc-----------------CCCcchhHHHHHHHHHHhhC
Q 003311 341 KKDEVEKY-LPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-----------------GTGKSKSLQNLSMQLRKCCN 402 (832)
Q Consensus 341 ~k~dv~~~-LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~-----------------~~~~~~~l~~~~~~LRk~cn 402 (832)
.+...... .++....+....+...+..++..+.......... .......+...+..++..+.
T Consensus 236 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~ 315 (773)
T PRK13766 236 LKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEAR 315 (773)
T ss_pred HHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcc
Confidence 76544321 2222222222333334444443332211000000 00000111222222222221
Q ss_pred CCccccccccch----------hhHHHHhhcchHHHHHHHHHhhh--hcCCeEEEEecchhHHHHHHHHHHhCCCeEEEE
Q 003311 403 HPYLFVGEYNMW----------RKEEIIRASGKFELLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRL 470 (832)
Q Consensus 403 hP~l~~~~~~~~----------~~~~l~~~S~Kl~~L~~lL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rl 470 (832)
++.......... ....+...++|+..|.++|.... ..+.++||||++..+++.|.++|...|+.+..+
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~ 395 (773)
T PRK13766 316 SSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRF 395 (773)
T ss_pred ccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEE
Confidence 111000000000 00111234789999999998876 578999999999999999999999999999999
Q ss_pred cCC--------CCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCc
Q 003311 471 DGS--------TKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 542 (832)
Q Consensus 471 dG~--------ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~ 542 (832)
+|. ++..+|..++++|+.+... +|++|.++++|+|++.+++||+||++|||..++|+.||++|.|+
T Consensus 396 ~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~---vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~--- 469 (773)
T PRK13766 396 VGQASKDGDKGMSQKEQIEILDKFRAGEFN---VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE--- 469 (773)
T ss_pred EccccccccCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---
Confidence 997 8889999999999997655 68999999999999999999999999999999998888888765
Q ss_pred EEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 003311 543 VRVFVLVSVGSIEEVILERAKQKMGID 569 (832)
Q Consensus 543 V~V~rLit~~siEe~Il~~~~~K~~l~ 569 (832)
++||.|++.+|+||.++....+|....
T Consensus 470 ~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 470 GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 789999999999999987776665444
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-34 Score=341.10 Aligned_cols=261 Identities=25% Similarity=0.370 Sum_probs=199.6
Q ss_pred ccCCCeEEEcCCCCcHHHHHHHHHHHHHH---------------hcCCCCCEEEEeCCCchHHHHHHHHhhCCCc-eEEE
Q 003311 131 NNNLNGILADEMGLGKTIQTIALIAYLLE---------------NKGVTGPHVIVAPKAVLPNWINEFSTWAPSI-AAVV 194 (832)
Q Consensus 131 ~~~~~gILaDemGlGKTiqaiali~~l~~---------------~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~-~v~~ 194 (832)
..+..+++|||||+|||+..+++...-.. .....|.+|||||.+++.||-.|+.++++.. +|..
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 34555799999999999998877632211 1123578999999999999999999999876 9999
Q ss_pred EcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH----------------------HHhhcCceEEEEeCCcccCCh
Q 003311 195 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ----------------------YLKKVQWIYMIVDEGHRLKNH 252 (832)
Q Consensus 195 ~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~----------------------~L~~~~w~~vIiDEaHriKN~ 252 (832)
|.|-...-..-. .....||||+|||+++..+.. .|..+.|.+||+|||+.+...
T Consensus 452 Y~Girk~~~~~~----~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess 527 (1394)
T KOG0298|consen 452 YFGIRKTFWLSP----FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS 527 (1394)
T ss_pred EechhhhcccCc----hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch
Confidence 998543211111 122689999999999987632 255578999999999999999
Q ss_pred hhHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhh
Q 003311 253 ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332 (832)
Q Consensus 253 ~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~ 332 (832)
.|..++++..+++.++|+.||||+|+ +.+|+.||+||.-.+|.....|.+.+..++... .....++++
T Consensus 528 sS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r-----------a~~~~~~dl 595 (1394)
T KOG0298|consen 528 SSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR-----------AKCEPLLDL 595 (1394)
T ss_pred HHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH-----------hhhhhHHHH
Confidence 99999999999999999999999999 999999999999999999999988776654322 223457788
Q ss_pred hhhhhhhhhHhHHhh--cCCCCeEEEEEcCCCHHHHHHHHHHHH----hcc--------cccccC---C----CcchhHH
Q 003311 333 IRPFILRRKKDEVEK--YLPGKSQVILKCDMSAWQKVYYQQVTD----VGR--------VGLDTG---T----GKSKSLQ 391 (832)
Q Consensus 333 L~pfllRR~k~dv~~--~LP~k~e~~v~~~ms~~Q~~lY~~i~~----~~~--------~~~~~~---~----~~~~~l~ 391 (832)
....+-|+.+..|+. .+||..+.+....+++.+..+|+.... ... ..+... . .....+.
T Consensus 596 ~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~ 675 (1394)
T KOG0298|consen 596 FKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIIL 675 (1394)
T ss_pred HHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHH
Confidence 888899999998876 479988888888999988877765322 110 011111 1 1124567
Q ss_pred HHHHHHHHhhCCCccc
Q 003311 392 NLSMQLRKCCNHPYLF 407 (832)
Q Consensus 392 ~~~~~LRk~cnhP~l~ 407 (832)
+.+.+||++|+||...
T Consensus 676 ~~l~rLRq~Cchplv~ 691 (1394)
T KOG0298|consen 676 KWLLRLRQACCHPLVG 691 (1394)
T ss_pred HHHHHHHHhhcccccc
Confidence 7888999999999764
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.5e-31 Score=291.34 Aligned_cols=429 Identities=21% Similarity=0.219 Sum_probs=279.2
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC--CC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--PS 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~--p~ 189 (832)
.+.|.||.....-.+. .|++++.+||||||++|+.++++.+...+ |.+|+++|+ .|+.|...-|.+.+ |.
T Consensus 14 ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFG--GKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcC--CeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 4889999998887774 59999999999999999998886665543 379999995 89999999998886 55
Q ss_pred ceEEEEcCCh--hHHHHHHHHHHhhcCCccEEecCHHHHHHhHH--HHhhcCceEEEEeCCcccCChhh--HHHHHHHcc
Q 003311 190 IAAVVYDGRP--DERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHEC--ALAKTISGY 263 (832)
Q Consensus 190 ~~v~~~~g~~--~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~--~L~~~~w~~vIiDEaHriKN~~s--k~~kal~~l 263 (832)
..++.+.|.. +.|.... .+-+|++.|++++.+|.. .+..-++.+||+|||||.-...+ -.++.....
T Consensus 87 ~~i~~ltGev~p~~R~~~w-------~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~ 159 (542)
T COG1111 87 DEIAALTGEVRPEEREELW-------AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS 159 (542)
T ss_pred hheeeecCCCChHHHHHHH-------hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHh
Confidence 6788888853 4444332 456799999999999853 34455788999999999854333 233333333
Q ss_pred -ccceEEEeeccCCCCCHHHHHHHHhccCCCCCC----ChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhh
Q 003311 264 -QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFN----SVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338 (832)
Q Consensus 264 -~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~----~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfll 338 (832)
...+.++||||| .++.+.+-..++-|+-.-.. ...+...+....--..-.+.+ +++-..+...|..+++|.+-
T Consensus 160 ~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~l-p~e~~~ir~~l~~~l~~~Lk 237 (542)
T COG1111 160 AKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDL-PEEIKEIRDLLRDALKPRLK 237 (542)
T ss_pred ccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccC-cHHHHHHHHHHHHHHHHHHH
Confidence 344789999999 46667776666666433211 111112111110000111222 23444555566666655431
Q ss_pred hhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccC------------------------CCcchhHHHHH
Q 003311 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTG------------------------TGKSKSLQNLS 394 (832)
Q Consensus 339 RR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~------------------------~~~~~~l~~~~ 394 (832)
.+++ .-.....++ -.++.+............... ......+.+.+
T Consensus 238 -~L~~--------~g~~~~~~~--~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl 306 (542)
T COG1111 238 -PLKE--------LGVIESSSP--VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYL 306 (542)
T ss_pred -HHHH--------cCceeccCc--ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 1111 111111111 112222221100000000000 00011122222
Q ss_pred HHHHHhhCC------------CccccccccchhhHHHHhhcchHHHHHHHHHhhh--hcCCeEEEEecchhHHHHHHHHH
Q 003311 395 MQLRKCCNH------------PYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYL 460 (832)
Q Consensus 395 ~~LRk~cnh------------P~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~--~~g~kvLIFsq~~~~ldiL~~~L 460 (832)
.+|..-|.. |+..............--..+|++.+.+++.+.. ..+.|+|||++|+++++.|.++|
T Consensus 307 ~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L 386 (542)
T COG1111 307 EKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFL 386 (542)
T ss_pred HHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHH
Confidence 222222222 1111000000000111124689999999999887 56789999999999999999999
Q ss_pred HhCCCeEE-EEcC--------CCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHh
Q 003311 461 KLNDFKFL-RLDG--------STKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAE 531 (832)
Q Consensus 461 ~~~g~~~~-rldG--------~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAi 531 (832)
...|.... ++-| +|++++..++|++|+.|..+ +|+||..|.+|||++.+|.||+|||.-+|...+||+
T Consensus 387 ~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~ 463 (542)
T COG1111 387 KKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRK 463 (542)
T ss_pred HhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhh
Confidence 99888775 7666 58999999999999998866 799999999999999999999999999999999999
Q ss_pred hhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh
Q 003311 532 DRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQ 574 (832)
Q Consensus 532 gRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~ 574 (832)
||++| ++.-+||-|+++||-|+.-+....+|..-....+.
T Consensus 464 GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~ 503 (542)
T COG1111 464 GRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIR 503 (542)
T ss_pred Ccccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHH
Confidence 99998 47789999999999999999999888755544443
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.98 E-value=2e-30 Score=301.63 Aligned_cols=337 Identities=18% Similarity=0.209 Sum_probs=234.6
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC--C
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--P 188 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~--p 188 (832)
...|||||.+++.-++. +.+||+..+||+|||++++.++.++.... .+++|||||. .|+.||.++|.+|. |
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~~~--~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLENY--EGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 36999999999987765 67789999999999999877766555542 3489999997 88999999999976 3
Q ss_pred CceE-EEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc-ccc
Q 003311 189 SIAA-VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQ 266 (832)
Q Consensus 189 ~~~v-~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l-~~~ 266 (832)
...+ .++.|.... ...+|+|+|++.+.+....+. ..|++|||||||++... .+...+..+ ++.
T Consensus 186 ~~~~~~i~~g~~~~------------~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~ 250 (501)
T PHA02558 186 REAMHKIYSGTAKD------------TDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDECHLFTGK--SLTSIITKLDNCK 250 (501)
T ss_pred ccceeEEecCcccC------------CCCCEEEeeHHHHhhchhhhc-cccCEEEEEchhcccch--hHHHHHHhhhccc
Confidence 3333 445554321 346899999999876543221 36899999999999753 345556666 578
Q ss_pred eEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHh
Q 003311 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVE 346 (832)
Q Consensus 267 ~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~ 346 (832)
++++|||||..... ..+.+..++.|-.... ...++.
T Consensus 251 ~~lGLTATp~~~~~-~~~~~~~~fG~i~~~v-------------------------------------------~~~~li 286 (501)
T PHA02558 251 FKFGLTGSLRDGKA-NILQYVGLFGDIFKPV-------------------------------------------TTSQLM 286 (501)
T ss_pred eEEEEeccCCCccc-cHHHHHHhhCCceEEe-------------------------------------------cHHHHH
Confidence 89999999954322 1222222222211000 000000
Q ss_pred --hcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcc
Q 003311 347 --KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 424 (832)
Q Consensus 347 --~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~ 424 (832)
..+.+.....+.+..++.....+ . ...+.. .+. .+.....
T Consensus 287 ~~g~l~~~~~~~v~~~~~~~~~~~~---~-------------~~~~~~---~~~-------------------~l~~~~~ 328 (501)
T PHA02558 287 EEGQVTDLKINSIFLRYPDEDRVKL---K-------------GEDYQE---EIK-------------------YITSHTK 328 (501)
T ss_pred hCCCcCCceEEEEeccCCHHHhhhh---c-------------ccchHH---HHH-------------------HHhccHH
Confidence 11222222333333332211000 0 000000 001 1122344
Q ss_pred hHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc
Q 003311 425 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504 (832)
Q Consensus 425 Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 504 (832)
+..++..++..+...|+++||||..+..++.|...|...|+++..++|+++.++|..+++.|+.+. ..|+|.|++..|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~--~~vLvaT~~~l~ 406 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK--GIIIVASYGVFS 406 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC--CeEEEEEcceec
Confidence 566777777777778899999999999999999999999999999999999999999999998754 335555669999
Q ss_pred cccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCc-EEEEEEEeCCC
Q 003311 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE-VRVFVLVSVGS 553 (832)
Q Consensus 505 ~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~-V~V~rLit~~s 553 (832)
+|+|++.+++||+++|+.+...++|++||++|.|..|+ +.||.|+-.-.
T Consensus 407 eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 407 TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred cccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 99999999999999999999999999999999998765 99999997544
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.98 E-value=1.3e-30 Score=297.84 Aligned_cols=363 Identities=21% Similarity=0.249 Sum_probs=268.9
Q ss_pred CCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCC
Q 003311 111 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS 189 (832)
Q Consensus 111 ~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~ 189 (832)
...+|||||.+++.-+...+..+..|++..++|.|||+.++.++..+.. ++|||||. .++.||.+.+.+++..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCC
Confidence 3468999999999988887666888999999999999999998876633 49999996 7899999888888754
Q ss_pred c-eEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH--HHHhhcCceEEEEeCCcccCChhhHHHHHHHccccc
Q 003311 190 I-AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ 266 (832)
Q Consensus 190 ~-~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~--~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~ 266 (832)
. .+..+.|..... ....|.|+||+++.+.. ..+....|++||+|||||+..+... ..+..+...
T Consensus 107 ~~~~g~~~~~~~~~-----------~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~~~~ 173 (442)
T COG1061 107 NDEIGIYGGGEKEL-----------EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR--RILELLSAA 173 (442)
T ss_pred ccccceecCceecc-----------CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH--HHHHhhhcc
Confidence 3 455565543221 11469999999998863 4444447999999999999765433 233444555
Q ss_pred e-EEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhh-HhH
Q 003311 267 R-RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK-KDE 344 (832)
Q Consensus 267 ~-rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~-k~d 344 (832)
+ +|+|||||...+...+.-+..++.|-+ .... +..
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g~~v-------------------------------------------y~~~~~~l 210 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIGPIV-------------------------------------------YEVSLKEL 210 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhcCCeE-------------------------------------------eecCHHHH
Confidence 5 999999997554334433333333222 2222 222
Q ss_pred Hh-hcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhc
Q 003311 345 VE-KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 423 (832)
Q Consensus 345 v~-~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S 423 (832)
+. ..|.+.....+.+.++......|..........+..... .... ...........
T Consensus 211 i~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------------------~~~~~~~~~~~ 267 (442)
T COG1061 211 IDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-----LRAE------------------NEARRIAIASE 267 (442)
T ss_pred HhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh-----hhHH------------------HHHHHHhhccH
Confidence 22 458888899999999999888887665443221111000 0000 00111223456
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
.|+..+..++.... .+.+++||+......+.+...|...|+ +..++|.++..+|..+++.|+.+... +|++++.+
T Consensus 268 ~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~---~lv~~~vl 342 (442)
T COG1061 268 RKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIK---VLVTVKVL 342 (442)
T ss_pred HHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCC---EEEEeeec
Confidence 67888888888766 789999999999999999999998888 99999999999999999999997744 79999999
Q ss_pred ccccCcccCCeEEEeCCCCChhhHHHHhhhcccc-CCcCc--EEEEEEEeCCCHHHHHHHHHH
Q 003311 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI-GQKKE--VRVFVLVSVGSIEEVILERAK 563 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRi-GQ~k~--V~V~rLit~~siEe~Il~~~~ 563 (832)
++|+|++.|+++|+..+.-++..+.|++||+.|. ..+.. +..|-+++..+.+..+.....
T Consensus 343 ~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 343 DEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred cceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 9999999999999999999999999999999994 44444 777888888888877765543
No 27
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=2.9e-27 Score=273.53 Aligned_cols=306 Identities=18% Similarity=0.231 Sum_probs=216.8
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 191 (832)
..++|+|.+++.-++. +.+.++..+||+|||+..+..+. . ..+.+|||+|. +|+.+|...+.... +.
T Consensus 10 ~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l--~----~~~~~lVi~P~~~L~~dq~~~l~~~g--i~ 77 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPAL--C----SDGITLVISPLISLMEDQVLQLKASG--IP 77 (470)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHH--H----cCCcEEEEecHHHHHHHHHHHHHHcC--Cc
Confidence 4899999999998876 77899999999999987643332 1 14578999996 77888999888764 44
Q ss_pred EEEEcCCh--hHHHHHHHHHHhhcCCccEEecCHHHHHHhH---HHH-hhcCceEEEEeCCcccCChhh-------HHHH
Q 003311 192 AVVYDGRP--DERKAMREEFFSERGRFNVLITHYDLIMRDR---QYL-KKVQWIYMIVDEGHRLKNHEC-------ALAK 258 (832)
Q Consensus 192 v~~~~g~~--~~r~~~~~~~~~~~~~~dVvItTye~l~~d~---~~L-~~~~w~~vIiDEaHriKN~~s-------k~~k 258 (832)
+..+.+.. ..+..+..... .+.++++++|++.+.... ..+ ....+.+|||||||++...+. .+..
T Consensus 78 ~~~l~~~~~~~~~~~i~~~~~--~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 78 ATFLNSSQSKEQQKNVLTDLK--DGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred EEEEeCCCCHHHHHHHHHHHh--cCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 44444433 22333333332 267899999999986533 333 345788999999999965432 2222
Q ss_pred HHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhh
Q 003311 259 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338 (832)
Q Consensus 259 al~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfll 338 (832)
....++....++|||||-.....++...+++-.|.++... |.
T Consensus 156 l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~~-------------------------------- 197 (470)
T TIGR00614 156 LKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------FD-------------------------------- 197 (470)
T ss_pred HHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------CC--------------------------------
Confidence 3345567789999999976655566555544333221100 00
Q ss_pred hhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHH
Q 003311 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEE 418 (832)
Q Consensus 339 RR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~ 418 (832)
-|.. .+.+.-.
T Consensus 198 ----------r~nl-~~~v~~~---------------------------------------------------------- 208 (470)
T TIGR00614 198 ----------RPNL-YYEVRRK---------------------------------------------------------- 208 (470)
T ss_pred ----------CCCc-EEEEEeC----------------------------------------------------------
Confidence 0100 0000000
Q ss_pred HHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 003311 419 IIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 498 (832)
Q Consensus 419 l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~Ll 498 (832)
....+..+..++.+ ...+.++||||.....++.+...|...|+.+..+||+++.++|..+++.|..+... +|+
T Consensus 209 ---~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~---vLV 281 (470)
T TIGR00614 209 ---TPKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ---VVV 281 (470)
T ss_pred ---CccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc---EEE
Confidence 00011112222221 13467789999999999999999999999999999999999999999999987766 799
Q ss_pred eccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEE
Q 003311 499 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 499 St~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
+|.++|+|||++.+++||+|++|.++..|.|++||++|.|+...+.+|
T Consensus 282 aT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 282 ATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred EechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999988765554
No 28
>PTZ00110 helicase; Provisional
Probab=99.96 E-value=1.4e-26 Score=271.56 Aligned_cols=321 Identities=21% Similarity=0.270 Sum_probs=218.4
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHH-HHHHHHHHhc----CCCCCEEEEeCC-CchHHHHHHHHhh
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENK----GVTGPHVIVAPK-AVLPNWINEFSTW 186 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqai-ali~~l~~~~----~~~~p~LIV~P~-sll~qW~~E~~k~ 186 (832)
.++.|+|.+++..+++ +.+.|+..+||+|||++.+ .++.++.... +....+|||||. .|+.|+..++.++
T Consensus 151 ~~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 3799999999988776 8899999999999999874 3444444321 112247999997 6788999999988
Q ss_pred CCC--ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCChh--hHHHHHH
Q 003311 187 APS--IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTI 260 (832)
Q Consensus 187 ~p~--~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~~--sk~~kal 260 (832)
... +.+.+..|.......... +. ..++|+|+|++.+...... +.-.++.+|||||||++.... ..+.+.+
T Consensus 227 ~~~~~i~~~~~~gg~~~~~q~~~-l~---~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il 302 (545)
T PTZ00110 227 GASSKIRNTVAYGGVPKRGQIYA-LR---RGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 302 (545)
T ss_pred hcccCccEEEEeCCCCHHHHHHH-HH---cCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHH
Confidence 743 444444443332222221 11 4689999999988654321 112357799999999997543 3344555
Q ss_pred Hccc-cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhh
Q 003311 261 SGYQ-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339 (832)
Q Consensus 261 ~~l~-~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllR 339 (832)
..+. ....+++|||.- .++-.+...+ ... .|..+.
T Consensus 303 ~~~~~~~q~l~~SAT~p----~~v~~l~~~l---------------~~~-------------------------~~v~i~ 338 (545)
T PTZ00110 303 SQIRPDRQTLMWSATWP----KEVQSLARDL---------------CKE-------------------------EPVHVN 338 (545)
T ss_pred HhCCCCCeEEEEEeCCC----HHHHHHHHHH---------------hcc-------------------------CCEEEE
Confidence 5553 345689999951 1111111100 000 000000
Q ss_pred hhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHH
Q 003311 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEI 419 (832)
Q Consensus 340 R~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l 419 (832)
.-..++ ...+.....+..+
T Consensus 339 vg~~~l-~~~~~i~q~~~~~------------------------------------------------------------ 357 (545)
T PTZ00110 339 VGSLDL-TACHNIKQEVFVV------------------------------------------------------------ 357 (545)
T ss_pred ECCCcc-ccCCCeeEEEEEE------------------------------------------------------------
Confidence 000000 0000000000000
Q ss_pred HhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 003311 420 IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 499 (832)
Q Consensus 420 ~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlS 499 (832)
....|...|..++..+...+.++||||+....++.|...|...|+++..+||.++..+|..+++.|+.+... +||+
T Consensus 358 -~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~---ILVa 433 (545)
T PTZ00110 358 -EEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSP---IMIA 433 (545)
T ss_pred -echhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCc---EEEE
Confidence 112355666777777666788999999999999999999999999999999999999999999999998766 7999
Q ss_pred ccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 500 TRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 500 t~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
|.++++|||++.+++||+||+|+++..|+||+||++|.|.+- .+|.|++.+
T Consensus 434 Tdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G--~ai~~~~~~ 484 (545)
T PTZ00110 434 TDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKG--ASYTFLTPD 484 (545)
T ss_pred cchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc--eEEEEECcc
Confidence 999999999999999999999999999999999999999754 456667665
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=1.9e-26 Score=266.33 Aligned_cols=316 Identities=18% Similarity=0.243 Sum_probs=220.4
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC---C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~---p 188 (832)
.++.|+|.+++..++. +.+.|+..+||+|||...+..+...+........+||+||. .+..||.+++..++ +
T Consensus 25 ~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 25 TEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 4788999999998775 88899999999999988654444444333323358999996 77889999988764 4
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCChh--hHHHHHHHccc
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ 264 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~~--sk~~kal~~l~ 264 (832)
+..+..+.|........... . ...+|+|+|++.+...... +.-..+.+||+||||++-+.+ ..+...+..++
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~l--~--~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~ 176 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDSL--E--HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAP 176 (460)
T ss_pred CcEEEEEECCCChHHHHHHh--c--CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCC
Confidence 67777777765443332211 1 5789999999998765321 222357899999999986543 33444455554
Q ss_pred -cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHh
Q 003311 265 -IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343 (832)
Q Consensus 265 -~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~ 343 (832)
....+++|||+-. .+..+ ...+ +..|. .+.-.
T Consensus 177 ~~~q~ll~SAT~~~-~~~~l---~~~~--------------~~~~~---------------------------~i~~~-- 209 (460)
T PRK11776 177 ARRQTLLFSATYPE-GIAAI---SQRF--------------QRDPV---------------------------EVKVE-- 209 (460)
T ss_pred cccEEEEEEecCcH-HHHHH---HHHh--------------cCCCE---------------------------EEEEC--
Confidence 3457999999731 11111 1100 00000 00000
Q ss_pred HHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhc
Q 003311 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 423 (832)
Q Consensus 344 dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S 423 (832)
.....+......+.++ ..
T Consensus 210 -~~~~~~~i~~~~~~~~-------------------------------------------------------------~~ 227 (460)
T PRK11776 210 -STHDLPAIEQRFYEVS-------------------------------------------------------------PD 227 (460)
T ss_pred -cCCCCCCeeEEEEEeC-------------------------------------------------------------cH
Confidence 0000011111111110 11
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
.|+..|..++... .+.++||||+....++.+...|...|+.+..+||++++.+|..+++.|+++... +||+|.++
T Consensus 228 ~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~---vLVaTdv~ 302 (460)
T PRK11776 228 ERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS---VLVATDVA 302 (460)
T ss_pred HHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEEeccc
Confidence 2556666666543 356899999999999999999999999999999999999999999999998766 79999999
Q ss_pred ccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
++|||++.+++||+||.|.++..|.||+||++|.|+. ..+|.|++.+
T Consensus 303 ~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~--G~ai~l~~~~ 349 (460)
T PRK11776 303 ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSK--GLALSLVAPE 349 (460)
T ss_pred ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCc--ceEEEEEchh
Confidence 9999999999999999999999999999999999865 4456666654
No 30
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=260.15 Aligned_cols=411 Identities=20% Similarity=0.212 Sum_probs=246.7
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCc
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSI 190 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~ 190 (832)
...||+||.+-++-++ +.|.|+|.+||+|||.+|+.++...++..+ .+.+++.+|. .++.|....|..++-..
T Consensus 60 ~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p-~~KiVF~aP~~pLv~QQ~a~~~~~~~~~ 133 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRP-KGKVVFLAPTRPLVNQQIACFSIYLIPY 133 (746)
T ss_pred cccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCC-cceEEEeeCCchHHHHHHHHHhhccCcc
Confidence 3589999999998776 789999999999999999888877777654 3799999996 67888888888887445
Q ss_pred eEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhc---CceEEEEeCCcccC-Chh-hHHHHHHHc--c
Q 003311 191 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKV---QWIYMIVDEGHRLK-NHE-CALAKTISG--Y 263 (832)
Q Consensus 191 ~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~---~w~~vIiDEaHriK-N~~-sk~~kal~~--l 263 (832)
.+....|....+......+ ...+|++.|++.+.++...-... .|.+||||||||.. |.. +.....+.. +
T Consensus 134 ~~T~~l~~~~~~~~r~~i~----~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~ 209 (746)
T KOG0354|consen 134 SVTGQLGDTVPRSNRGEIV----ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKN 209 (746)
T ss_pred cceeeccCccCCCchhhhh----cccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhh
Confidence 5555555433222222222 46789999999999885443333 48999999999984 322 233323322 2
Q ss_pred ccceEEEeeccCCCCCHHHHHHHHhccCCCC--CCChHHHHHHhcccccccC-cccCChHHHHHHHHHHHhhhhhhhhhh
Q 003311 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTI--FNSVENFEEWFNAPFKDRG-QVALTDEEQLLIIRRLHHVIRPFILRR 340 (832)
Q Consensus 264 ~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~--f~~~~~F~~~f~~~~~~~~-~~~~~~ee~~~~~~~L~~~L~pfllRR 340 (832)
...+.|+|||||= ++.....+.+.=|...+ ... ..-...+..--.... .+. -.........+|..+++|++.+-
T Consensus 210 ~~~qILgLTASpG-~~~~~v~~~I~~L~asldvr~~-ssi~~~y~~lr~~~~i~v~-~~~~~~~~~~~f~~~i~p~l~~l 286 (746)
T KOG0354|consen 210 QGNQILGLTASPG-SKLEQVQNVIDNLCASLDVRTE-SSIKSNYEELREHVQIPVD-LSLCERDIEDPFGMIIEPLLQQL 286 (746)
T ss_pred ccccEEEEecCCC-ccHHHHHHHHHhhheecccchh-hhhhhhHHHHhccCcccCc-HHHhhhhhhhhHHHHHHHHHHHH
Confidence 4447899999997 66666665555443331 110 000111110000000 011 11222334556777777776554
Q ss_pred hHhHHhh-c-----------------CCCCeEEEEEcCCCHHHHHHHHHHHH--hcccccc------cCCCcchhHHHHH
Q 003311 341 KKDEVEK-Y-----------------LPGKSQVILKCDMSAWQKVYYQQVTD--VGRVGLD------TGTGKSKSLQNLS 394 (832)
Q Consensus 341 ~k~dv~~-~-----------------LP~k~e~~v~~~ms~~Q~~lY~~i~~--~~~~~~~------~~~~~~~~l~~~~ 394 (832)
....+.. . .|........| +.......|...+. .+...+. ..... ..+..
T Consensus 287 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e-~~~~k-- 362 (746)
T KOG0354|consen 287 QEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNC-FYALHLRKYNLALLISDGIRFVDALDYLEDFYEE-VALKK-- 362 (746)
T ss_pred HhcCccccccccccccchhhhhhhhhccCCCccchhh-HHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccc-cchhH--
Confidence 3222211 0 00000000101 11111111111000 0000000 00000 00000
Q ss_pred HHHHHhh---CCCccccccccchhhHHHH----hhcchHHHHHHHHHhhhh--cCCeEEEEecchhHHHHHHHHHH-h--
Q 003311 395 MQLRKCC---NHPYLFVGEYNMWRKEEII----RASGKFELLDRLLPKLRK--SGHRVLLFSQMTRLMDILEIYLK-L-- 462 (832)
Q Consensus 395 ~~LRk~c---nhP~l~~~~~~~~~~~~l~----~~S~Kl~~L~~lL~~l~~--~g~kvLIFsq~~~~ldiL~~~L~-~-- 462 (832)
.+.... .|+++... .. ....+. ...+|++.|.++|..... +..|+|||+.++..++.|..+|. .
T Consensus 363 -~~~~~~e~~~~~~~~~~-m~--~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~ 438 (746)
T KOG0354|consen 363 -YLKLELEARLIRNFTEN-MN--ELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHE 438 (746)
T ss_pred -HHHHHhcchhhHHHHHH-HH--hhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhh
Confidence 000000 01100000 00 000000 236899999999887654 56799999999999999999987 2
Q ss_pred CCCeEEEEcC--------CCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhc
Q 003311 463 NDFKFLRLDG--------STKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRA 534 (832)
Q Consensus 463 ~g~~~~rldG--------~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRa 534 (832)
.|++...+-| ++++.+..++|++|++|..+ +|++|..|.+|||+..||.||.||..-||...+||+||
T Consensus 439 ~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR- 514 (746)
T KOG0354|consen 439 LGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR- 514 (746)
T ss_pred cccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-
Confidence 3556555655 57889999999999999877 79999999999999999999999999999999999999
Q ss_pred cccCCcCcEEEEEEEe
Q 003311 535 HRIGQKKEVRVFVLVS 550 (832)
Q Consensus 535 hRiGQ~k~V~V~rLit 550 (832)
+| +++-+++.|.+
T Consensus 515 gR---a~ns~~vll~t 527 (746)
T KOG0354|consen 515 GR---ARNSKCVLLTT 527 (746)
T ss_pred cc---ccCCeEEEEEc
Confidence 66 55656666666
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.95 E-value=8.1e-26 Score=260.60 Aligned_cols=316 Identities=18% Similarity=0.242 Sum_probs=211.8
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC------CCCCEEEEeCC-CchHHHHHHHHh
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG------VTGPHVIVAPK-AVLPNWINEFST 185 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~------~~~p~LIV~P~-sll~qW~~E~~k 185 (832)
..+.|+|.+++..++. +.+.|+..+||+|||+..+..+...+.... ....+|||||. .|..||.+++..
T Consensus 22 ~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 4788999999987775 788999999999999997655444332211 11258999997 678899999988
Q ss_pred hCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH--HHhhcCceEEEEeCCcccCChh--hHHHHH
Q 003311 186 WAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAKT 259 (832)
Q Consensus 186 ~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~--~L~~~~w~~vIiDEaHriKN~~--sk~~ka 259 (832)
+.. .+.++...|.......... + .+.++|+|+|++.+..... .+.-...++|||||||++-... ..+...
T Consensus 98 ~~~~~~~~~~~~~gg~~~~~~~~~-l---~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~i 173 (456)
T PRK10590 98 YSKYLNIRSLVVFGGVSINPQMMK-L---RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRV 173 (456)
T ss_pred HhccCCCEEEEEECCcCHHHHHHH-H---cCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHH
Confidence 753 3455555554433222211 1 1578999999999865432 1222357899999999986543 234444
Q ss_pred HHcccc-ceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhh
Q 003311 260 ISGYQI-QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338 (832)
Q Consensus 260 l~~l~~-~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfll 338 (832)
+..+.. ...+++|||+-. .+.++.. .+ +..|.. +
T Consensus 174 l~~l~~~~q~l~~SAT~~~-~~~~l~~---~~--------------~~~~~~---------------------------i 208 (456)
T PRK10590 174 LAKLPAKRQNLLFSATFSD-DIKALAE---KL--------------LHNPLE---------------------------I 208 (456)
T ss_pred HHhCCccCeEEEEeCCCcH-HHHHHHH---HH--------------cCCCeE---------------------------E
Confidence 555544 357999999632 1111111 00 000000 0
Q ss_pred hhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHH
Q 003311 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEE 418 (832)
Q Consensus 339 RR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~ 418 (832)
.-.... ...+........++
T Consensus 209 ~~~~~~--~~~~~i~~~~~~~~---------------------------------------------------------- 228 (456)
T PRK10590 209 EVARRN--TASEQVTQHVHFVD---------------------------------------------------------- 228 (456)
T ss_pred EEeccc--ccccceeEEEEEcC----------------------------------------------------------
Confidence 000000 00000001111110
Q ss_pred HHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 003311 419 IIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 498 (832)
Q Consensus 419 l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~Ll 498 (832)
...|..+|..++.. ...+++||||.....++.|...|...|+.+..+||.++..+|..+++.|+.+... +||
T Consensus 229 ---~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---iLV 300 (456)
T PRK10590 229 ---KKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR---VLV 300 (456)
T ss_pred ---HHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCc---EEE
Confidence 01122333344332 2356899999999999999999999999999999999999999999999998765 799
Q ss_pred eccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeC
Q 003311 499 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551 (832)
Q Consensus 499 St~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~ 551 (832)
+|.++++|||++.+++||+||+|.++..|+|++||++|.|.+.. ++.|++.
T Consensus 301 aTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~--ai~l~~~ 351 (456)
T PRK10590 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGE--ALSLVCV 351 (456)
T ss_pred EccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCee--EEEEecH
Confidence 99999999999999999999999999999999999999997654 4445543
No 32
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.95 E-value=8.3e-26 Score=259.16 Aligned_cols=313 Identities=17% Similarity=0.191 Sum_probs=212.3
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHH-HHHHHhc---CCCCCEEEEeCC-CchHHHHHHHHhhC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI-AYLLENK---GVTGPHVIVAPK-AVLPNWINEFSTWA 187 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali-~~l~~~~---~~~~p~LIV~P~-sll~qW~~E~~k~~ 187 (832)
.+|+++|.+++..++. +.+.|+..++|+|||+.++..+ ..+.... .....+||++|. .++.|+.+.+..+.
T Consensus 22 ~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 4788999999988775 7789999999999999876544 3443321 123468999997 57788888777765
Q ss_pred C--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH--HHhhcCceEEEEeCCcccCChh--hHHHHHHH
Q 003311 188 P--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAKTIS 261 (832)
Q Consensus 188 p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~--~L~~~~w~~vIiDEaHriKN~~--sk~~kal~ 261 (832)
. ++.+..+.|........ .... ..++|+|+|++.+..... .+....+.+|||||||++...+ ..+...+.
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~--~~l~--~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~ 173 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHA--EVFS--ENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAA 173 (434)
T ss_pred ccCCcEEEEEECCCCHHHHH--HHhc--CCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHH
Confidence 3 46777777755432221 1111 568999999998875432 1222356789999999986533 23333333
Q ss_pred cc-ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 003311 262 GY-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340 (832)
Q Consensus 262 ~l-~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR 340 (832)
.+ .....+++|||+-...+.++ ..++... |..+.-
T Consensus 174 ~~~~~~q~~~~SAT~~~~~~~~~------------------~~~~~~~--------------------------~~~i~~ 209 (434)
T PRK11192 174 ETRWRKQTLLFSATLEGDAVQDF------------------AERLLND--------------------------PVEVEA 209 (434)
T ss_pred hCccccEEEEEEeecCHHHHHHH------------------HHHHccC--------------------------CEEEEe
Confidence 33 23456999999743222221 1111000 000000
Q ss_pred hHhHHhhcCCCCe-EEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHH
Q 003311 341 KKDEVEKYLPGKS-QVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEI 419 (832)
Q Consensus 341 ~k~dv~~~LP~k~-e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l 419 (832)
.. ........ ...+.++
T Consensus 210 ~~---~~~~~~~i~~~~~~~~----------------------------------------------------------- 227 (434)
T PRK11192 210 EP---SRRERKKIHQWYYRAD----------------------------------------------------------- 227 (434)
T ss_pred cC---CcccccCceEEEEEeC-----------------------------------------------------------
Confidence 00 00000000 0000000
Q ss_pred HhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 003311 420 IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 499 (832)
Q Consensus 420 ~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlS 499 (832)
....|..+|..++.. ....++||||.....++.|...|...|+.+..++|.++..+|..+++.|+.+... +|++
T Consensus 228 -~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~---vLVa 301 (434)
T PRK11192 228 -DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVN---VLVA 301 (434)
T ss_pred -CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCc---EEEE
Confidence 012355556666543 2457999999999999999999999999999999999999999999999998766 7999
Q ss_pred ccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEE
Q 003311 500 TRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRV 545 (832)
Q Consensus 500 t~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V 545 (832)
|.++++|||++.+++||+||+|+++..|+|++||++|.|.+..+.+
T Consensus 302 Td~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 302 TDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred ccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 9999999999999999999999999999999999999987655443
No 33
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.95 E-value=1.1e-25 Score=262.98 Aligned_cols=316 Identities=16% Similarity=0.201 Sum_probs=214.2
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHH-HHHHHHh------cCCCCCEEEEeCC-CchHHHHHHHH
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLEN------KGVTGPHVIVAPK-AVLPNWINEFS 184 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaial-i~~l~~~------~~~~~p~LIV~P~-sll~qW~~E~~ 184 (832)
..|+|+|.+++..++. +.+.|+..+||+|||+..+.. +.++... ......+|||+|. .|..|+..++.
T Consensus 142 ~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 4899999999998875 889999999999999987544 4444321 1123468999997 67788888888
Q ss_pred hhCCC--ceEE-EEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH--HHhhcCceEEEEeCCcccCCh--hhHHH
Q 003311 185 TWAPS--IAAV-VYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNH--ECALA 257 (832)
Q Consensus 185 k~~p~--~~v~-~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~--~L~~~~w~~vIiDEaHriKN~--~sk~~ 257 (832)
.+... +.+. ++.|..... .... + ...++|+|+|++.+..... .+.-....+|||||||++... ...+.
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~-q~~~-l---~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~ 292 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQ-QLYR-I---QQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVM 292 (518)
T ss_pred HHhCCCCceEEEEECCcchHH-HHHH-h---cCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHH
Confidence 77543 3444 444443222 2211 1 1468999999998865422 122235679999999998653 33455
Q ss_pred HHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 003311 258 KTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337 (832)
Q Consensus 258 kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfl 337 (832)
..+..+.....+++|||.-. .+..+ ...+...+ ..
T Consensus 293 ~i~~~l~~~q~l~~SATl~~-~v~~l---~~~~~~~~-----------------------------------------~~ 327 (518)
T PLN00206 293 QIFQALSQPQVLLFSATVSP-EVEKF---ASSLAKDI-----------------------------------------IL 327 (518)
T ss_pred HHHHhCCCCcEEEEEeeCCH-HHHHH---HHHhCCCC-----------------------------------------EE
Confidence 55666777788999999632 11111 11110000 00
Q ss_pred hhhhHhHHhhcCCCC--eEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchh
Q 003311 338 LRRKKDEVEKYLPGK--SQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 415 (832)
Q Consensus 338 lRR~k~dv~~~LP~k--~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~ 415 (832)
+.... ...|.. ....++++
T Consensus 328 i~~~~----~~~~~~~v~q~~~~~~------------------------------------------------------- 348 (518)
T PLN00206 328 ISIGN----PNRPNKAVKQLAIWVE------------------------------------------------------- 348 (518)
T ss_pred EEeCC----CCCCCcceeEEEEecc-------------------------------------------------------
Confidence 00000 000000 11111111
Q ss_pred hHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHh-CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCce
Q 003311 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL-NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494 (832)
Q Consensus 416 ~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~-~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~ 494 (832)
...|...|..++........++|||++....++.|...|.. .|+.+..+||+++..+|..+++.|+.+..+
T Consensus 349 ------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~-- 420 (518)
T PLN00206 349 ------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP-- 420 (518)
T ss_pred ------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC--
Confidence 11123334444444333346899999999999999999974 699999999999999999999999998876
Q ss_pred EEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 495 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 495 v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
+|++|.++++|||++.+++||+||+|.++..|+|++||++|.|.. -.++.|++.+
T Consensus 421 -ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~--G~ai~f~~~~ 475 (518)
T PLN00206 421 -VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK--GTAIVFVNEE 475 (518)
T ss_pred -EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC--eEEEEEEchh
Confidence 799999999999999999999999999999999999999999964 4555666653
No 34
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.95 E-value=1.9e-25 Score=265.35 Aligned_cols=301 Identities=19% Similarity=0.230 Sum_probs=212.9
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 191 (832)
..++|+|.+++.-++. +.++++..+||+|||+..+..+. .. .+.+|||+|. +++.+|...+.... +.
T Consensus 24 ~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal--~~----~g~tlVisPl~sL~~dqv~~l~~~g--i~ 91 (607)
T PRK11057 24 QQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPAL--VL----DGLTLVVSPLISLMKDQVDQLLANG--VA 91 (607)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHH--Hc----CCCEEEEecHHHHHHHHHHHHHHcC--Cc
Confidence 3799999999987775 88899999999999987643332 22 3578999996 77888988888763 44
Q ss_pred EEEEcCChh--HHHHHHHHHHhhcCCccEEecCHHHHHHh--HHHHhhcCceEEEEeCCcccCChhh-------HHHHHH
Q 003311 192 AVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKNHEC-------ALAKTI 260 (832)
Q Consensus 192 v~~~~g~~~--~r~~~~~~~~~~~~~~dVvItTye~l~~d--~~~L~~~~w~~vIiDEaHriKN~~s-------k~~kal 260 (832)
+..+.+... .......... .+.++++++|++.+... ...+...++.+|||||||++...+. .+....
T Consensus 92 ~~~~~s~~~~~~~~~~~~~~~--~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~ 169 (607)
T PRK11057 92 AACLNSTQTREQQLEVMAGCR--TGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLR 169 (607)
T ss_pred EEEEcCCCCHHHHHHHHHHHh--CCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHH
Confidence 444444332 2222222222 26788999999988642 3445556789999999999865432 222333
Q ss_pred HccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 003311 261 SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340 (832)
Q Consensus 261 ~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR 340 (832)
..++....++||||+-.....++...+.+-.|.++... |.
T Consensus 170 ~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~------~~---------------------------------- 209 (607)
T PRK11057 170 QRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------FD---------------------------------- 209 (607)
T ss_pred HhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC------CC----------------------------------
Confidence 45566778999999876555555555443322211000 00
Q ss_pred hHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHH
Q 003311 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 420 (832)
Q Consensus 341 ~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~ 420 (832)
-|.....++.
T Consensus 210 --------r~nl~~~v~~-------------------------------------------------------------- 219 (607)
T PRK11057 210 --------RPNIRYTLVE-------------------------------------------------------------- 219 (607)
T ss_pred --------CCcceeeeee--------------------------------------------------------------
Confidence 0000000000
Q ss_pred hhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 003311 421 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 500 (832)
Q Consensus 421 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt 500 (832)
...++..|..++.. ..+.++||||.....++.+...|...|+.+..+||+++.++|..+++.|..+... +|++|
T Consensus 220 -~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~---VLVaT 293 (607)
T PRK11057 220 -KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ---IVVAT 293 (607)
T ss_pred -ccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC---EEEEe
Confidence 00011122222222 3577999999999999999999999999999999999999999999999987766 79999
Q ss_pred cccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcE
Q 003311 501 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543 (832)
Q Consensus 501 ~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V 543 (832)
.++|.|||++.++.||+||+|.++..|.|++|||+|.|....+
T Consensus 294 ~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ 336 (607)
T PRK11057 294 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 336 (607)
T ss_pred chhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceE
Confidence 9999999999999999999999999999999999999976553
No 35
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.95 E-value=2.3e-25 Score=264.73 Aligned_cols=302 Identities=20% Similarity=0.269 Sum_probs=218.0
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 191 (832)
.++||+|.+++.-++. +.+.+++.+||.|||+.+...+ +.. .+.+|||+|. +++.++...+... ++.
T Consensus 12 ~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpa--l~~----~g~~lVisPl~sL~~dq~~~l~~~--gi~ 79 (591)
T TIGR01389 12 DDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPA--LLL----KGLTVVISPLISLMKDQVDQLRAA--GVA 79 (591)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHH--HHc----CCcEEEEcCCHHHHHHHHHHHHHc--CCc
Confidence 4799999999988875 7889999999999999875333 222 3578999996 7888899888876 355
Q ss_pred EEEEcCChh--HHHHHHHHHHhhcCCccEEecCHHHHHHh--HHHHhhcCceEEEEeCCcccCChhh-------HHHHHH
Q 003311 192 AVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKNHEC-------ALAKTI 260 (832)
Q Consensus 192 v~~~~g~~~--~r~~~~~~~~~~~~~~dVvItTye~l~~d--~~~L~~~~w~~vIiDEaHriKN~~s-------k~~kal 260 (832)
+..+++... .+..+...... +.++++++|++.+... ...+...+..+|||||||++...+. .+....
T Consensus 80 ~~~~~s~~~~~~~~~~~~~l~~--~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~ 157 (591)
T TIGR01389 80 AAYLNSTLSAKEQQDIEKALVN--GELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA 157 (591)
T ss_pred EEEEeCCCCHHHHHHHHHHHhC--CCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHH
Confidence 555555432 23333222222 6789999999988542 3456667889999999999865332 233334
Q ss_pred HccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 003311 261 SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340 (832)
Q Consensus 261 ~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR 340 (832)
..++....++||||+-.....++...+.+-.|..+.. .|.
T Consensus 158 ~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~~---------------------------------- 197 (591)
T TIGR01389 158 ERFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SFD---------------------------------- 197 (591)
T ss_pred HhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CCC----------------------------------
Confidence 5555666999999987665555555544332221100 000
Q ss_pred hHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHH
Q 003311 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 420 (832)
Q Consensus 341 ~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~ 420 (832)
-|.....++.
T Consensus 198 --------r~nl~~~v~~-------------------------------------------------------------- 207 (591)
T TIGR01389 198 --------RPNLRFSVVK-------------------------------------------------------------- 207 (591)
T ss_pred --------CCCcEEEEEe--------------------------------------------------------------
Confidence 0110000000
Q ss_pred hhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 003311 421 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 500 (832)
Q Consensus 421 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt 500 (832)
...+...+..++... .+.++||||.....++.+..+|...|+++..+||+++.++|..+++.|..+... +|++|
T Consensus 208 -~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~---vlVaT 281 (591)
T TIGR01389 208 -KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVK---VMVAT 281 (591)
T ss_pred -CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCc---EEEEe
Confidence 011222333344332 267899999999999999999999999999999999999999999999987765 79999
Q ss_pred cccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEE
Q 003311 501 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVR 544 (832)
Q Consensus 501 ~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~ 544 (832)
.++|.|||++.++.||+|++|.|+..|.|++|||+|.|+...+.
T Consensus 282 ~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 282 NAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred chhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 99999999999999999999999999999999999999766553
No 36
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=7.3e-26 Score=258.74 Aligned_cols=316 Identities=16% Similarity=0.197 Sum_probs=213.7
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHH-HHHHhcC------CCCCEEEEeCC-CchHHHHHHHH
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENKG------VTGPHVIVAPK-AVLPNWINEFS 184 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~-~l~~~~~------~~~p~LIV~P~-sll~qW~~E~~ 184 (832)
..+.|.|.+++.-++. +.+.|+..++|+|||+..+..+. .+..... ....+|||||. .|+.||.+++.
T Consensus 29 ~~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~ 104 (423)
T PRK04837 29 HNCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAE 104 (423)
T ss_pred CCCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHH
Confidence 3788999999987775 88899999999999998764443 3433221 12358999996 67889988887
Q ss_pred hhCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH--HHhhcCceEEEEeCCcccCChh--hHHHH
Q 003311 185 TWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAK 258 (832)
Q Consensus 185 k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~--~L~~~~w~~vIiDEaHriKN~~--sk~~k 258 (832)
.+.. ++.+..+.|......... .+ . ..++|+|+|++.+..... .+.-..+.+|||||||++-+.. ..+..
T Consensus 105 ~l~~~~~~~v~~~~gg~~~~~~~~-~l-~--~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~ 180 (423)
T PRK04837 105 PLAQATGLKLGLAYGGDGYDKQLK-VL-E--SGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRW 180 (423)
T ss_pred HHhccCCceEEEEECCCCHHHHHH-Hh-c--CCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHH
Confidence 7753 466666666543322211 11 1 468999999999866432 2233467899999999986543 23333
Q ss_pred HHHccc---cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhh
Q 003311 259 TISGYQ---IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 335 (832)
Q Consensus 259 al~~l~---~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~p 335 (832)
.+..+. ....+++|||+-. .+.++.. .+ +..|
T Consensus 181 i~~~~~~~~~~~~~l~SAT~~~-~~~~~~~--~~---------------~~~p--------------------------- 215 (423)
T PRK04837 181 LFRRMPPANQRLNMLFSATLSY-RVRELAF--EH---------------MNNP--------------------------- 215 (423)
T ss_pred HHHhCCCccceeEEEEeccCCH-HHHHHHH--HH---------------CCCC---------------------------
Confidence 444443 2335888999631 1111100 00 0000
Q ss_pred hhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchh
Q 003311 336 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 415 (832)
Q Consensus 336 fllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~ 415 (832)
....+. + ... ... .++ +.++..
T Consensus 216 -----------------~~i~v~-~-~~~---------------------~~~-------~i~----~~~~~~------- 237 (423)
T PRK04837 216 -----------------EYVEVE-P-EQK---------------------TGH-------RIK----EELFYP------- 237 (423)
T ss_pred -----------------EEEEEc-C-CCc---------------------CCC-------cee----EEEEeC-------
Confidence 000000 0 000 000 000 000000
Q ss_pred hHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceE
Q 003311 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 495 (832)
Q Consensus 416 ~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v 495 (832)
....|+..|..++.. ....++||||+....++.+...|...|+++..++|.++..+|..+++.|+.+...
T Consensus 238 -----~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~--- 307 (423)
T PRK04837 238 -----SNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD--- 307 (423)
T ss_pred -----CHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc---
Confidence 012355566666654 2467999999999999999999999999999999999999999999999998766
Q ss_pred EEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeC
Q 003311 496 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551 (832)
Q Consensus 496 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~ 551 (832)
+|++|.++++|||++.+++||+||+|+++..|.|++||++|.|+.- .++.|+++
T Consensus 308 vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G--~ai~~~~~ 361 (423)
T PRK04837 308 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASG--HSISLACE 361 (423)
T ss_pred EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCe--eEEEEeCH
Confidence 7999999999999999999999999999999999999999999664 45556654
No 37
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2e-25 Score=262.73 Aligned_cols=316 Identities=17% Similarity=0.224 Sum_probs=214.8
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHH-HHHHhc------CCCCCEEEEeCC-CchHHHHHHHH
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENK------GVTGPHVIVAPK-AVLPNWINEFS 184 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~-~l~~~~------~~~~p~LIV~P~-sll~qW~~E~~ 184 (832)
..+.|.|.+++..++. +.+.|+..++|+|||+..+..+. .+.... .....+|||||. .|+.|+...+.
T Consensus 30 ~~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~ 105 (572)
T PRK04537 30 TRCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAV 105 (572)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 4789999999998885 88899999999999998765544 343321 112468999997 77889999998
Q ss_pred hhCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH---HhhcCceEEEEeCCcccCChh--hHHH
Q 003311 185 TWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKNHE--CALA 257 (832)
Q Consensus 185 k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~---L~~~~w~~vIiDEaHriKN~~--sk~~ 257 (832)
++.. .+.+..++|........ .... ..++|+|+|++.+...... +......+|||||||++-... ..+.
T Consensus 106 ~l~~~~~i~v~~l~Gg~~~~~q~--~~l~--~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~ 181 (572)
T PRK04537 106 KFGADLGLRFALVYGGVDYDKQR--ELLQ--QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIR 181 (572)
T ss_pred HHhccCCceEEEEECCCCHHHHH--HHHh--CCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHH
Confidence 8864 35566666654332221 1112 4689999999998765322 223356789999999985432 2333
Q ss_pred HHHHccc---cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhh
Q 003311 258 KTISGYQ---IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIR 334 (832)
Q Consensus 258 kal~~l~---~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~ 334 (832)
..+..+. ....+++|||.-. .+.++.. .++..|..
T Consensus 182 ~il~~lp~~~~~q~ll~SATl~~-~v~~l~~-----------------~~l~~p~~------------------------ 219 (572)
T PRK04537 182 FLLRRMPERGTRQTLLFSATLSH-RVLELAY-----------------EHMNEPEK------------------------ 219 (572)
T ss_pred HHHHhcccccCceEEEEeCCccH-HHHHHHH-----------------HHhcCCcE------------------------
Confidence 4444443 3467899999521 1111110 00000000
Q ss_pred hhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccch
Q 003311 335 PFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMW 414 (832)
Q Consensus 335 pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~ 414 (832)
+..... ...+......+.+.
T Consensus 220 ---i~v~~~---~~~~~~i~q~~~~~------------------------------------------------------ 239 (572)
T PRK04537 220 ---LVVETE---TITAARVRQRIYFP------------------------------------------------------ 239 (572)
T ss_pred ---EEeccc---cccccceeEEEEec------------------------------------------------------
Confidence 000000 00000000000000
Q ss_pred hhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCce
Q 003311 415 RKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494 (832)
Q Consensus 415 ~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~ 494 (832)
....|+..|..++.. ..+.++||||+....++.|.+.|...|+.+..++|.++..+|..+++.|+.+...
T Consensus 240 ------~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~-- 309 (572)
T PRK04537 240 ------ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE-- 309 (572)
T ss_pred ------CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe--
Confidence 011244455555543 3577999999999999999999999999999999999999999999999987765
Q ss_pred EEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeC
Q 003311 495 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551 (832)
Q Consensus 495 v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~ 551 (832)
+||+|.++++|||++.+++||+||.|+++..|+|++||++|.|..-. .+.|++.
T Consensus 310 -VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~--ai~~~~~ 363 (572)
T PRK04537 310 -ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGD--AISFACE 363 (572)
T ss_pred -EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCce--EEEEecH
Confidence 79999999999999999999999999999999999999999997644 4455554
No 38
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2.8e-25 Score=257.57 Aligned_cols=318 Identities=19% Similarity=0.239 Sum_probs=214.1
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHH-HHHHHHhcCC------CCCEEEEeCC-CchHHHHHHHH
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLENKGV------TGPHVIVAPK-AVLPNWINEFS 184 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaial-i~~l~~~~~~------~~p~LIV~P~-sll~qW~~E~~ 184 (832)
..++|+|.+++..++. +.+.|++.+||+|||+..+.. +..+...... ...+|||+|. .|..||.+.+.
T Consensus 108 ~~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 4799999999987765 889999999999999887544 4444433211 2468999996 77888888888
Q ss_pred hhCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCChh--hHHHH
Q 003311 185 TWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAK 258 (832)
Q Consensus 185 k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~~--sk~~k 258 (832)
.+.. ++.+..+.|.......... +. ...++|+|+|++.+...... +.-....+|||||||++.+.+ ..+..
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~~~~-~~--~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~ 260 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQLKQ-LE--ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQ 260 (475)
T ss_pred HhhccCCCEEEEEEccCChHHHHHH-Hh--CCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHH
Confidence 7753 4667777775433222221 11 15689999999998653221 111246799999999996543 23444
Q ss_pred HHHccc---cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhh
Q 003311 259 TISGYQ---IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 335 (832)
Q Consensus 259 al~~l~---~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~p 335 (832)
.+..+. ....+++|||... ++.++... |...+.
T Consensus 261 i~~~~~~~~~~q~i~~SAT~~~-~~~~~~~~-----------------~~~~~~-------------------------- 296 (475)
T PRK01297 261 IIRQTPRKEERQTLLFSATFTD-DVMNLAKQ-----------------WTTDPA-------------------------- 296 (475)
T ss_pred HHHhCCCCCCceEEEEEeecCH-HHHHHHHH-----------------hccCCE--------------------------
Confidence 444442 3467999999532 22211110 000000
Q ss_pred hhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchh
Q 003311 336 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 415 (832)
Q Consensus 336 fllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~ 415 (832)
.+.-....+. .+.....+..+
T Consensus 297 -~v~~~~~~~~--~~~~~~~~~~~-------------------------------------------------------- 317 (475)
T PRK01297 297 -IVEIEPENVA--SDTVEQHVYAV-------------------------------------------------------- 317 (475)
T ss_pred -EEEeccCcCC--CCcccEEEEEe--------------------------------------------------------
Confidence 0000000000 00000000000
Q ss_pred hHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceE
Q 003311 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 495 (832)
Q Consensus 416 ~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v 495 (832)
..+.|...|..++.. ....++||||+....++.+...|...|+.+..++|.++.++|..+++.|+.+...
T Consensus 318 -----~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~--- 387 (475)
T PRK01297 318 -----AGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIR--- 387 (475)
T ss_pred -----cchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCc---
Confidence 112244445555443 2356999999999999999999999999999999999999999999999998765
Q ss_pred EEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 496 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 496 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
+|++|.++++|||++.+++||+|++|+++..|+|+.||++|.|+.- .++.|++.+
T Consensus 388 vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g--~~i~~~~~~ 442 (475)
T PRK01297 388 VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASG--VSISFAGED 442 (475)
T ss_pred EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCc--eEEEEecHH
Confidence 7999999999999999999999999999999999999999999754 445555544
No 39
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.94 E-value=9.3e-25 Score=258.84 Aligned_cols=325 Identities=15% Similarity=0.173 Sum_probs=219.5
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC---C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~---p 188 (832)
.++.|+|.+++..++. +.+.|+..+||+|||++.+..+...+........+||+||. .|+.||..++..+. +
T Consensus 27 ~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 4799999999998875 77889999999999998754443333322233468999997 77899999887764 5
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCChh--hHHHHHHHccc
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ 264 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~~--sk~~kal~~l~ 264 (832)
++.++.++|.......+... ...++|||+|++.+...... +.-..+.+|||||||.+-+.. ..+...+..++
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp 178 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 (629)
T ss_pred CceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCC
Confidence 67777666654333222211 14688999999998764321 222356789999999986543 33445555664
Q ss_pred c-ceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHh
Q 003311 265 I-QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343 (832)
Q Consensus 265 ~-~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~ 343 (832)
. ...+++|||.- ..+.++.. . ++..|. .+... .
T Consensus 179 ~~~q~llfSAT~p-~~i~~i~~---~--------------~l~~~~---------------------------~i~i~-~ 212 (629)
T PRK11634 179 EGHQTALFSATMP-EAIRRITR---R--------------FMKEPQ---------------------------EVRIQ-S 212 (629)
T ss_pred CCCeEEEEEccCC-hhHHHHHH---H--------------HcCCCe---------------------------EEEcc-C
Confidence 3 45689999952 11111100 0 000000 00000 0
Q ss_pred HHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhc
Q 003311 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 423 (832)
Q Consensus 344 dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S 423 (832)
. ....|......+.+ ...
T Consensus 213 ~-~~~~~~i~q~~~~v-------------------------------------------------------------~~~ 230 (629)
T PRK11634 213 S-VTTRPDISQSYWTV-------------------------------------------------------------WGM 230 (629)
T ss_pred c-cccCCceEEEEEEe-------------------------------------------------------------chh
Confidence 0 00001000000000 112
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
.|...|.++|... ...++||||.....++.|...|...|+.+..++|.++..+|..++++|+.+... +||+|+++
T Consensus 231 ~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~---ILVATdv~ 305 (629)
T PRK11634 231 RKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD---ILIATDVA 305 (629)
T ss_pred hHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC---EEEEcchH
Confidence 3555666666542 346899999999999999999999999999999999999999999999998766 79999999
Q ss_pred ccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 003311 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 562 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~ 562 (832)
+.|||++.+++||+||+|.++..|+|++||++|.|..-. .+-|+.. -|..++..+
T Consensus 306 arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~--ai~~v~~--~e~~~l~~i 360 (629)
T PRK11634 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR--ALLFVEN--RERRLLRNI 360 (629)
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcce--EEEEech--HHHHHHHHH
Confidence 999999999999999999999999999999999996543 4444443 344555444
No 40
>PTZ00424 helicase 45; Provisional
Probab=99.94 E-value=4.4e-25 Score=250.45 Aligned_cols=319 Identities=18% Similarity=0.252 Sum_probs=212.5
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 189 (832)
..|.|+|.+++..++. +.+.|+..+||+|||+.++..+...+........+|||+|. .++.|+...+..++. .
T Consensus 49 ~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 4799999999988775 88899999999999998765554444433334578999996 667778777777653 3
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH--HHhhcCceEEEEeCCcccCC--hhhHHHHHHHccc-
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKN--HECALAKTISGYQ- 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~--~L~~~~w~~vIiDEaHriKN--~~sk~~kal~~l~- 264 (832)
..+....|....+.... .. ....+|+|+|++.+..... .+.-.++++|||||||++.. ....+...+..+.
T Consensus 125 ~~~~~~~g~~~~~~~~~-~~---~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~ 200 (401)
T PTZ00424 125 VRCHACVGGTVVRDDIN-KL---KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPP 200 (401)
T ss_pred ceEEEEECCcCHHHHHH-HH---cCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCC
Confidence 34444445443332221 11 1457899999998765322 12233678999999999854 3334555555553
Q ss_pred cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhH
Q 003311 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344 (832)
Q Consensus 265 ~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~d 344 (832)
....+++|||+-. ...++... |+ ..+... ... ...
T Consensus 201 ~~~~i~~SAT~~~-~~~~~~~~--~~---------------~~~~~~-------------------------~~~--~~~ 235 (401)
T PTZ00424 201 DVQVALFSATMPN-EILELTTK--FM---------------RDPKRI-------------------------LVK--KDE 235 (401)
T ss_pred CcEEEEEEecCCH-HHHHHHHH--Hc---------------CCCEEE-------------------------EeC--CCC
Confidence 4568999999632 11111000 00 000000 000 000
Q ss_pred HhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcc
Q 003311 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 424 (832)
Q Consensus 345 v~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~ 424 (832)
+ .+.......+.++. ...
T Consensus 236 ~--~~~~~~~~~~~~~~------------------------------------------------------------~~~ 253 (401)
T PTZ00424 236 L--TLEGIRQFYVAVEK------------------------------------------------------------EEW 253 (401)
T ss_pred c--ccCCceEEEEecCh------------------------------------------------------------HHH
Confidence 0 00000011111100 001
Q ss_pred hHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc
Q 003311 425 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504 (832)
Q Consensus 425 Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 504 (832)
+...+..++... ...++||||.....++.+...|...++.+..++|+++.++|..+++.|+.+... +|++|.+++
T Consensus 254 ~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~---vLvaT~~l~ 328 (401)
T PTZ00424 254 KFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR---VLITTDLLA 328 (401)
T ss_pred HHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC---EEEEccccc
Confidence 222233333322 346899999999999999999999999999999999999999999999998766 799999999
Q ss_pred cccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCC
Q 003311 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 553 (832)
Q Consensus 505 ~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~s 553 (832)
+|||++.+++||+||++.++..+.|++||++|.|.. ..++.|++...
T Consensus 329 ~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~ 375 (401)
T PTZ00424 329 RGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPDD 375 (401)
T ss_pred CCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHHH
Confidence 999999999999999999999999999999999854 55667776653
No 41
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.94 E-value=6e-25 Score=264.43 Aligned_cols=309 Identities=17% Similarity=0.189 Sum_probs=212.7
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 191 (832)
..+||+|.+++..++. +.+.|+..+||.|||+.....+. . . .+.+|||+|+ +|+.++...+... ++.
T Consensus 459 ~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL--~-~---~GiTLVISPLiSLmqDQV~~L~~~--GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPAL--I-C---PGITLVISPLVSLIQDQIMNLLQA--NIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHH--H-c---CCcEEEEeCHHHHHHHHHHHHHhC--CCe
Confidence 5899999999998876 88999999999999998643332 1 1 3579999996 6666566655543 355
Q ss_pred EEEEcCCh--hHHHHHHHHHHhhcCCccEEecCHHHHHHh---HHHHhh----cCceEEEEeCCcccCChhhH-------
Q 003311 192 AVVYDGRP--DERKAMREEFFSERGRFNVLITHYDLIMRD---RQYLKK----VQWIYMIVDEGHRLKNHECA------- 255 (832)
Q Consensus 192 v~~~~g~~--~~r~~~~~~~~~~~~~~dVvItTye~l~~d---~~~L~~----~~w~~vIiDEaHriKN~~sk------- 255 (832)
...+.+.. .....+........+.++++++|++.+... ...+.. ....+|||||||++...+..
T Consensus 527 Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~ 606 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQG 606 (1195)
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHH
Confidence 55444433 222233333333336789999999987532 122221 23688999999998654321
Q ss_pred HHHHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhh
Q 003311 256 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 335 (832)
Q Consensus 256 ~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~p 335 (832)
+......+....+++||||.-.....++...|....+.+|.. -|..
T Consensus 607 L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~------Sf~R---------------------------- 652 (1195)
T PLN03137 607 LGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ------SFNR---------------------------- 652 (1195)
T ss_pred HHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec------ccCc----------------------------
Confidence 112224556677899999987666666655554332221110 0100
Q ss_pred hhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchh
Q 003311 336 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 415 (832)
Q Consensus 336 fllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~ 415 (832)
|.....++. . .
T Consensus 653 --------------pNL~y~Vv~-k-~----------------------------------------------------- 663 (1195)
T PLN03137 653 --------------PNLWYSVVP-K-T----------------------------------------------------- 663 (1195)
T ss_pred --------------cceEEEEec-c-c-----------------------------------------------------
Confidence 111000110 0 0
Q ss_pred hHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceE
Q 003311 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 495 (832)
Q Consensus 416 ~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v 495 (832)
...+..|.+++... ..+...||||.....++.+..+|...|+++..+||+++.++|..++++|..+...
T Consensus 664 -------kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~--- 732 (1195)
T PLN03137 664 -------KKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN--- 732 (1195)
T ss_pred -------hhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc---
Confidence 00011122222211 1245789999999999999999999999999999999999999999999998765
Q ss_pred EEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEE
Q 003311 496 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 547 (832)
Q Consensus 496 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~r 547 (832)
+||+|.|+|.|||++.+++||+|++|.++..|.|++|||+|.|+...+..|+
T Consensus 733 VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 733 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 7999999999999999999999999999999999999999999887755544
No 42
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=8.2e-25 Score=246.29 Aligned_cols=312 Identities=22% Similarity=0.304 Sum_probs=224.0
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHH-HHHHHHHHh-c---CCCCC-EEEEeCC-CchHHHHHHHHh
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLEN-K---GVTGP-HVIVAPK-AVLPNWINEFST 185 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqai-ali~~l~~~-~---~~~~p-~LIV~P~-sll~qW~~E~~k 185 (832)
..+.|.|..+.-.++. +.+.|..+.+|+|||+..+ -+|.++... . ...+| +||++|. -|..|-..++..
T Consensus 112 ~~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~ 187 (519)
T KOG0331|consen 112 EKPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEARE 187 (519)
T ss_pred CCCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHH
Confidence 3788899998877776 8899999999999999864 555566542 1 12234 8999997 567778888888
Q ss_pred hCCCce--EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCC--hhhHHHHH
Q 003311 186 WAPSIA--AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKN--HECALAKT 259 (832)
Q Consensus 186 ~~p~~~--v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN--~~sk~~ka 259 (832)
+..... .++.+|......++.... ...+|+|+|+..+...... +.--+..|+|+|||.+|-. ...+..+.
T Consensus 188 ~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~I 263 (519)
T KOG0331|consen 188 FGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKI 263 (519)
T ss_pred HcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHH
Confidence 875433 555444444444443332 5789999999999765432 3333678999999999954 56788888
Q ss_pred HHcc-ccce-EEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 003311 260 ISGY-QIQR-RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337 (832)
Q Consensus 260 l~~l-~~~~-rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfl 337 (832)
+..+ .+.+ .++-|||= + .+
T Consensus 264 l~~i~~~~rQtlm~saTw-p---~~------------------------------------------------------- 284 (519)
T KOG0331|consen 264 LSQIPRPDRQTLMFSATW-P---KE------------------------------------------------------- 284 (519)
T ss_pred HHhcCCCcccEEEEeeec-c---HH-------------------------------------------------------
Confidence 8887 4443 67777772 0 00
Q ss_pred hhhhHhHHhhcCCCCeEEEEEc-CCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhh
Q 003311 338 LRRKKDEVEKYLPGKSQVILKC-DMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK 416 (832)
Q Consensus 338 lRR~k~dv~~~LP~k~e~~v~~-~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~ 416 (832)
+|.+..++.. .|-.+. +... .+. ....+.++-..|
T Consensus 285 v~~lA~~fl~-~~~~i~-ig~~~~~~---------------------------a~~~i~qive~~--------------- 320 (519)
T KOG0331|consen 285 VRQLAEDFLN-NPIQIN-VGNKKELK---------------------------ANHNIRQIVEVC--------------- 320 (519)
T ss_pred HHHHHHHHhc-CceEEE-ecchhhhh---------------------------hhcchhhhhhhc---------------
Confidence 0111111111 111111 1100 000 000111222222
Q ss_pred HHHHhhcchHHHHHHHHHhhh-hcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceE
Q 003311 417 EEIIRASGKFELLDRLLPKLR-KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 495 (832)
Q Consensus 417 ~~l~~~S~Kl~~L~~lL~~l~-~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v 495 (832)
....|...|..+|.... ..+.||||||.....++.|+..|...+++..-|||..++.+|..+|+.|+++..+
T Consensus 321 ----~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~--- 393 (519)
T KOG0331|consen 321 ----DETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSP--- 393 (519)
T ss_pred ----CHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcc---
Confidence 23567888888888876 4567999999999999999999999999999999999999999999999999887
Q ss_pred EEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCc
Q 003311 496 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 542 (832)
Q Consensus 496 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~ 542 (832)
+|++|+.+++|||++.+++||+||+|-|...|+||+||.+|.|++-.
T Consensus 394 vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~ 440 (519)
T KOG0331|consen 394 VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGT 440 (519)
T ss_pred eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCce
Confidence 89999999999999999999999999999999999999999776643
No 43
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.1e-24 Score=231.27 Aligned_cols=323 Identities=22% Similarity=0.294 Sum_probs=238.1
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHH-HHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT-IALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-- 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqa-iali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p-- 188 (832)
..+.+.|.+++-.++. +.++|.+.|+|+|||... |-++..|+... ..-..||++|. .+..|....|+....
T Consensus 82 ~~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p-~~~~~lVLtPtRELA~QI~e~fe~Lg~~i 156 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEP-KLFFALVLTPTRELAQQIAEQFEALGSGI 156 (476)
T ss_pred CCCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCC-CCceEEEecCcHHHHHHHHHHHHHhcccc
Confidence 4778899999988886 889999999999999985 55666777653 33467999997 556667777888853
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHH---hhcCceEEEEeCCcccCCh--hhHHHHHHHcc
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL---KKVQWIYMIVDEGHRLKNH--ECALAKTISGY 263 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L---~~~~w~~vIiDEaHriKN~--~sk~~kal~~l 263 (832)
++.+.+..|..+......... .+++|+|.|+..+.+....- .--...++|+|||.++-|. .-.+.+.++.+
T Consensus 157 glr~~~lvGG~~m~~q~~~L~----kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~i 232 (476)
T KOG0330|consen 157 GLRVAVLVGGMDMMLQANQLS----KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVI 232 (476)
T ss_pred CeEEEEEecCchHHHHHHHhh----cCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhc
Confidence 578888888877665544433 68899999999998876532 2224568999999999875 45788888888
Q ss_pred ccceE-EEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhH
Q 003311 264 QIQRR-LLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 342 (832)
Q Consensus 264 ~~~~r-llLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k 342 (832)
+..++ ++.|||-- .+...|.. ..++
T Consensus 233 p~erqt~LfsATMt-~kv~kL~r--------------------------------------------------asl~--- 258 (476)
T KOG0330|consen 233 PRERQTFLFSATMT-KKVRKLQR--------------------------------------------------ASLD--- 258 (476)
T ss_pred CccceEEEEEeecc-hhhHHHHh--------------------------------------------------hccC---
Confidence 76555 77888842 22222210 0000
Q ss_pred hHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhh
Q 003311 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 422 (832)
Q Consensus 343 ~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~ 422 (832)
-|-+. .-+ ..|+.+. .|.+ -|+|.. .
T Consensus 259 ------~p~~v------~~s----~ky~tv~----------------------~lkQ----~ylfv~------------~ 284 (476)
T KOG0330|consen 259 ------NPVKV------AVS----SKYQTVD----------------------HLKQ----TYLFVP------------G 284 (476)
T ss_pred ------CCeEE------ecc----chhcchH----------------------Hhhh----heEecc------------c
Confidence 01110 000 0111111 1111 122211 2
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
.-|-..|..+|.++ .|..+||||......+.+.-+|...|+....++|.|++..|..+++.|+++..+ +|++|+.
T Consensus 285 k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~---iLv~TDV 359 (476)
T KOG0330|consen 285 KDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS---ILVCTDV 359 (476)
T ss_pred cccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc---EEEecch
Confidence 23556677888765 468999999999999999999999999999999999999999999999997766 7999999
Q ss_pred cccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHH
Q 003311 503 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILER 561 (832)
Q Consensus 503 gg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~ 561 (832)
|++|||++.+|.||+||.|-+...|++|.||+.|.| +.-.++.||+...|| .+++
T Consensus 360 aSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve--~~qr 414 (476)
T KOG0330|consen 360 ASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE--LVQR 414 (476)
T ss_pred hcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH--HHHH
Confidence 999999999999999999999999999999999999 777888999985444 4444
No 44
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.1e-24 Score=236.22 Aligned_cols=380 Identities=19% Similarity=0.303 Sum_probs=260.1
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc-hHHHHHHHHhhCC--
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINEFSTWAP-- 188 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~p-- 188 (832)
...+||||...++-|.. ....+.||+.-++|.|||+..+..++.. .+.+||+|..++ +.||..+|..|..
T Consensus 300 st~iRpYQEksL~KMFG-NgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred ccccCchHHHHHHHHhC-CCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccC
Confidence 46899999999997764 1113468999999999999988776543 457899999755 8999999999973
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHH----------hHHHHhhcCceEEEEeCCcccCChhhHHHH
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMR----------DRQYLKKVQWIYMIVDEGHRLKNHECALAK 258 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~----------d~~~L~~~~w~~vIiDEaHriKN~~sk~~k 258 (832)
.-.++.|.....++.. ....||||||.++.. -..++....|.++|+||+|-+ +...+.+
T Consensus 373 d~~i~rFTsd~Ke~~~---------~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--PA~MFRR 441 (776)
T KOG1123|consen 373 DDQICRFTSDAKERFP---------SGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--PAKMFRR 441 (776)
T ss_pred ccceEEeeccccccCC---------CCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--hHHHHHH
Confidence 3456666665544322 567799999999853 246788889999999999987 3444555
Q ss_pred HHHccccceEEEeeccCCCCCHHHHHHHHhcc-CCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 003311 259 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFL-LPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337 (832)
Q Consensus 259 al~~l~~~~rllLTGTPlqN~l~EL~sLl~fL-~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfl 337 (832)
.+.-..+...|+||||-+..+ |=..=|||| .|.++.. .|.+.-.
T Consensus 442 Vlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEA--nWmdL~~------------------------------- 486 (776)
T KOG1123|consen 442 VLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWMDLQK------------------------------- 486 (776)
T ss_pred HHHHHHHHhhccceeEEeecc--ccccccceeecchhhhc--cHHHHHh-------------------------------
Confidence 556668888999999987543 222334665 4554431 1111000
Q ss_pred hhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhH
Q 003311 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKE 417 (832)
Q Consensus 338 lRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~ 417 (832)
...+.......|+|+||+.-...|-......+. +.
T Consensus 487 --------kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~-----------lL-------------------------- 521 (776)
T KOG1123|consen 487 --------KGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM-----------LL-------------------------- 521 (776)
T ss_pred --------CCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh-----------ee--------------------------
Confidence 011333445689999998754444332211100 00
Q ss_pred HHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 418 EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 418 ~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
.+-+..|+.+..-+++.....|.|+|||+...-.+...+ -..|-+ .|.|.|++.+|..+++.|+... .+..+.
T Consensus 522 -yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YA---ikl~Kp--fIYG~Tsq~ERm~ILqnFq~n~-~vNTIF 594 (776)
T KOG1123|consen 522 -YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYA---IKLGKP--FIYGPTSQNERMKILQNFQTNP-KVNTIF 594 (776)
T ss_pred -eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHH---HHcCCc--eEECCCchhHHHHHHHhcccCC-ccceEE
Confidence 012467888888888888889999999999865554443 333444 3789999999999999999743 333333
Q ss_pred EeccccccccCcccCCeEEEeCCCC-ChhhHHHHhhhccccCCcC----cEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 003311 498 LSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKK----EVRVFVLVSVGSIEEVILERAKQKMGIDAKV 572 (832)
Q Consensus 498 lSt~agg~GLNL~~ad~VI~~D~~w-Np~~~~QAigRahRiGQ~k----~V~V~rLit~~siEe~Il~~~~~K~~l~~~v 572 (832)
+ +++|...++|+.|+.+|-..+.. +-.++.||.||+.|.-..+ ++..|-||+.+|.|...- . ++-+ -.
T Consensus 595 l-SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YS-t-KRQ~----FL 667 (776)
T KOG1123|consen 595 L-SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYS-T-KRQQ----FL 667 (776)
T ss_pred E-eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhh-h-hhhh----hh
Confidence 3 58999999999999999998876 6678999999999975333 389999999999885432 1 1211 23
Q ss_pred HhcCc-----------CCC----CCCHHHHHHHHHHHHHhcccCCC
Q 003311 573 IQAGL-----------FNT----TSTAQDRREMLKEIMRRGTSSLG 603 (832)
Q Consensus 573 i~~g~-----------~~~----~~~~~~~~~~l~~il~~~~~~~~ 603 (832)
|+.|- -+. -.+.+++.++|+.+|..+...++
T Consensus 668 idQGYsfkVit~L~gme~~~~l~y~skeeq~~LLq~Vl~a~d~~~e 713 (776)
T KOG1123|consen 668 IDQGYSFKVITNLPGMENLEDLAYASKEEQLELLQKVLLASDLDAE 713 (776)
T ss_pred hhcCceEEEeecCCCcCcCcccccCCHHHHHHHHHHHHhcchhhhc
Confidence 33331 111 13567788888888876655443
No 45
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.92 E-value=5.1e-23 Score=245.59 Aligned_cols=304 Identities=18% Similarity=0.249 Sum_probs=203.3
Q ss_pred CCchHHHHHHHHHHHHhhcc--CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC-
Q 003311 113 GELRAYQLEGLQWMLSLFNN--NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP- 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~--~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p- 188 (832)
.+|.++|.+++..++..... ..+.+|..++|+|||+.++..+...... ...+||++|. .|..||.+++.++++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 58999999999999876432 3467999999999999987655555443 3478999997 667999999999986
Q ss_pred -CceEEEEcCChhH--HHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccc-
Q 003311 189 -SIAAVVYDGRPDE--RKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ- 264 (832)
Q Consensus 189 -~~~v~~~~g~~~~--r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~- 264 (832)
++.+.+++|.... +......+.. +.++|+|+|+..+.... .-.+..+|||||+|++.-. ..........
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~--g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~~--qr~~l~~~~~~ 383 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIAS--GQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGVE--QRKKLREKGQG 383 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhC--CCCCEEEecHHHHhccc---cccccceEEEechhhccHH--HHHHHHHhccc
Confidence 4778888776433 3323333222 67899999999876432 1235679999999997432 1112222222
Q ss_pred --cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhH
Q 003311 265 --IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 342 (832)
Q Consensus 265 --~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k 342 (832)
..+.+++||||+...+. +..+- .. .
T Consensus 384 ~~~~~~l~~SATp~prtl~----l~~~~------~l-----------------------------------~-------- 410 (630)
T TIGR00643 384 GFTPHVLVMSATPIPRTLA----LTVYG------DL-----------------------------------D-------- 410 (630)
T ss_pred CCCCCEEEEeCCCCcHHHH----HHhcC------Cc-----------------------------------c--------
Confidence 57899999999764321 11000 00 0
Q ss_pred hHHhhcCCCCe--EEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHH
Q 003311 343 DEVEKYLPGKS--QVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 420 (832)
Q Consensus 343 ~dv~~~LP~k~--e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~ 420 (832)
..+...+|... .....+.-.
T Consensus 411 ~~~i~~~p~~r~~i~~~~~~~~---------------------------------------------------------- 432 (630)
T TIGR00643 411 TSIIDELPPGRKPITTVLIKHD---------------------------------------------------------- 432 (630)
T ss_pred eeeeccCCCCCCceEEEEeCcc----------------------------------------------------------
Confidence 00001122110 000010000
Q ss_pred hhcchHHHHHHHHHhhhhcCCeEEEEecch--------hHHHHHHHHHHh--CCCeEEEEcCCCCHHHHHHHHHhhcCCC
Q 003311 421 RASGKFELLDRLLPKLRKSGHRVLLFSQMT--------RLMDILEIYLKL--NDFKFLRLDGSTKTEERGTLLKQFNAPD 490 (832)
Q Consensus 421 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~--------~~ldiL~~~L~~--~g~~~~rldG~ts~~eR~~~i~~Fn~~~ 490 (832)
....+...+.+....|++++|||... ..+..+...|.. .++.+..+||.++.++|..++++|+++.
T Consensus 433 ----~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~ 508 (630)
T TIGR00643 433 ----EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGE 508 (630)
T ss_pred ----hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 00112222223334688899998764 223344444442 5789999999999999999999999987
Q ss_pred CCceEEEEeccccccccCcccCCeEEEeCCCC-ChhhHHHHhhhccccCCcCcEE
Q 003311 491 SPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVR 544 (832)
Q Consensus 491 ~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~w-Np~~~~QAigRahRiGQ~k~V~ 544 (832)
.. +|+||.+.++|||++.+++||+++++. +...+.|+.||++|-|....|.
T Consensus 509 ~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 509 VD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred CC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 66 799999999999999999999999985 6788999999999998654443
No 46
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=5.6e-23 Score=239.14 Aligned_cols=332 Identities=22% Similarity=0.300 Sum_probs=231.9
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHH-HHHHHHHhcCCCC-CEEEEeCC-CchHHHHHHHHhhCC-
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIA-LIAYLLENKGVTG-PHVIVAPK-AVLPNWINEFSTWAP- 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaia-li~~l~~~~~~~~-p~LIV~P~-sll~qW~~E~~k~~p- 188 (832)
..+.|.|..++--++. +.+.|..+.+|+|||...+. ++..+........ +.||++|. .|..|-.+++.++..
T Consensus 50 ~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 4788999999988776 78889999999999988644 4444332122222 28999997 567778888887754
Q ss_pred --CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH--HHhhcCceEEEEeCCcccCChh--hHHHHHHHc
Q 003311 189 --SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHE--CALAKTISG 262 (832)
Q Consensus 189 --~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~--~L~~~~w~~vIiDEaHriKN~~--sk~~kal~~ 262 (832)
.+.++++.|......+. ..+. ..++|||.|+..+..... .+.-....++|+|||.+|-+.+ ..+...+..
T Consensus 126 ~~~~~~~~i~GG~~~~~q~-~~l~---~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~ 201 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQI-EALK---RGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKA 201 (513)
T ss_pred cCCccEEEEECCCCHHHHH-HHHh---cCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHh
Confidence 46666666655544444 2222 249999999999885432 2344467789999999997753 455666666
Q ss_pred ccc-ceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhh
Q 003311 263 YQI-QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 341 (832)
Q Consensus 263 l~~-~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~ 341 (832)
++. ...++.|||.-. .+.++ ..-+.. .|..+...
T Consensus 202 ~p~~~qtllfSAT~~~-~i~~l---~~~~l~-----------------------------------------~p~~i~v~ 236 (513)
T COG0513 202 LPPDRQTLLFSATMPD-DIREL---ARRYLN-----------------------------------------DPVEIEVS 236 (513)
T ss_pred CCcccEEEEEecCCCH-HHHHH---HHHHcc-----------------------------------------CCcEEEEc
Confidence 654 667899999632 22211 100000 11111100
Q ss_pred HhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHh
Q 003311 342 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIR 421 (832)
Q Consensus 342 k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~ 421 (832)
........+...+..+.|+-
T Consensus 237 ~~~~~~~~~~i~q~~~~v~~------------------------------------------------------------ 256 (513)
T COG0513 237 VEKLERTLKKIKQFYLEVES------------------------------------------------------------ 256 (513)
T ss_pred cccccccccCceEEEEEeCC------------------------------------------------------------
Confidence 00000011112222222210
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
...|+.+|..++..... .++||||.....++.|...|...|+++..|||++++.+|..+++.|+++... +|++|+
T Consensus 257 ~~~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~---vLVaTD 331 (513)
T COG0513 257 EEEKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR---VLVATD 331 (513)
T ss_pred HHHHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC---EEEEec
Confidence 01477777787776433 2799999999999999999999999999999999999999999999988776 799999
Q ss_pred ccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHH
Q 003311 502 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 565 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K 565 (832)
++++|||++..++||+||.|.++..|+||+||++|.| +.-..+.|++. .-|...+..++..
T Consensus 332 vaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG--~~G~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 332 VAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAG--RKGVAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred hhhccCCccccceeEEccCCCCHHHheeccCccccCC--CCCeEEEEeCc-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 44567778876 3366666665554
No 47
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.91 E-value=1.2e-22 Score=249.75 Aligned_cols=324 Identities=19% Similarity=0.189 Sum_probs=204.6
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHH-HHHHHHhc-----CCCCCEEEEeCC-CchHHHHHHH--
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLENK-----GVTGPHVIVAPK-AVLPNWINEF-- 183 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaial-i~~l~~~~-----~~~~p~LIV~P~-sll~qW~~E~-- 183 (832)
..|+|+|.+++..+.. +.++|++.+||+|||+.++.. +..+.... .....+|+|+|. .|..|+.+.+
T Consensus 31 ~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 4699999999987654 889999999999999997644 44444321 112358999996 5666665533
Q ss_pred -----HhhC-------CCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH------HHHhhcCceEEEEeC
Q 003311 184 -----STWA-------PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR------QYLKKVQWIYMIVDE 245 (832)
Q Consensus 184 -----~k~~-------p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~------~~L~~~~w~~vIiDE 245 (832)
..++ |.+.+.+.+|......... ... ..++|+|||++.+.... ..|. ...+|||||
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~--~l~--~~p~IlVtTPE~L~~ll~~~~~~~~l~--~l~~VVIDE 180 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQK--MLK--KPPHILITTPESLAILLNSPKFREKLR--TVKWVIVDE 180 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHH--HHh--CCCCEEEecHHHHHHHhcChhHHHHHh--cCCEEEEec
Confidence 2332 4677888888654332211 111 46899999999885321 1222 467899999
Q ss_pred CcccCCh--hhHHHHHHHcc-----ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCC
Q 003311 246 GHRLKNH--ECALAKTISGY-----QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALT 318 (832)
Q Consensus 246 aHriKN~--~sk~~kal~~l-----~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~ 318 (832)
+|.+.+. +..+...+..+ ....+++||||+ .++.++.. |+...... ..+
T Consensus 181 ~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~---------~~~---------- 236 (876)
T PRK13767 181 IHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD---------GEP---------- 236 (876)
T ss_pred hhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc---------CCC----------
Confidence 9999743 33333333222 345789999996 23444322 22111000 000
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHH
Q 003311 319 DEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLR 398 (832)
Q Consensus 319 ~ee~~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LR 398 (832)
+|+.+ +...........+.++....
T Consensus 237 ---------------r~~~i------v~~~~~k~~~i~v~~p~~~l---------------------------------- 261 (876)
T PRK13767 237 ---------------RDCEI------VDARFVKPFDIKVISPVDDL---------------------------------- 261 (876)
T ss_pred ---------------CceEE------EccCCCccceEEEeccCccc----------------------------------
Confidence 00000 00000000011111110000
Q ss_pred HhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHh------CCCeEEEEcC
Q 003311 399 KCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL------NDFKFLRLDG 472 (832)
Q Consensus 399 k~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~------~g~~~~rldG 472 (832)
.... .......+...|..+...++++||||+....++.+...|.. .+..+..+||
T Consensus 262 --------~~~~-----------~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg 322 (876)
T PRK13767 262 --------IHTP-----------AEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHS 322 (876)
T ss_pred --------cccc-----------cchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeC
Confidence 0000 00001112233334444578999999999999999888865 2467899999
Q ss_pred CCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhcccc-CCcCcEEEEE
Q 003311 473 STKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI-GQKKEVRVFV 547 (832)
Q Consensus 473 ~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRi-GQ~k~V~V~r 547 (832)
+++.++|..+++.|+++... +|++|.++++|||++.+++||+|++|.++..++|++||++|. |......++-
T Consensus 323 ~ls~~~R~~ve~~fk~G~i~---vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 323 SLSREVRLEVEEKLKRGELK---VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred CCCHHHHHHHHHHHHcCCCe---EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999998765 799999999999999999999999999999999999999986 4445555554
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.91 E-value=2.1e-22 Score=241.97 Aligned_cols=308 Identities=18% Similarity=0.216 Sum_probs=205.6
Q ss_pred CCCchHHHHHHHHHHHHhhcc--CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC
Q 003311 112 GGELRAYQLEGLQWMLSLFNN--NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 188 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~--~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 188 (832)
+.+|.++|.+++..+..-... ..+.+|..++|+|||+.++..+...... ...+||++|. .|..|+.+.|.++++
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 358999999999988875432 2467999999999999987665544443 3478999997 677889999999986
Q ss_pred C--ceEEEEcCChh--HHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHc-c
Q 003311 189 S--IAAVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-Y 263 (832)
Q Consensus 189 ~--~~v~~~~g~~~--~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~-l 263 (832)
. +.+.+++|... .+......+.. +.++|+|+|+..+.... .+ .+..+|||||+|++.- .....+.. .
T Consensus 336 ~~~i~v~ll~G~~~~~~r~~~~~~l~~--g~~~IvVgT~~ll~~~v-~~--~~l~lvVIDE~Hrfg~---~qr~~l~~~~ 407 (681)
T PRK10917 336 PLGIRVALLTGSLKGKERREILEAIAS--GEADIVIGTHALIQDDV-EF--HNLGLVIIDEQHRFGV---EQRLALREKG 407 (681)
T ss_pred hcCcEEEEEcCCCCHHHHHHHHHHHhC--CCCCEEEchHHHhcccc-hh--cccceEEEechhhhhH---HHHHHHHhcC
Confidence 4 67788888654 33333333322 57999999998875422 12 2567899999999832 22333432 2
Q ss_pred ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHh
Q 003311 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343 (832)
Q Consensus 264 ~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~ 343 (832)
...+.++|||||+...+. +..+-. +.+
T Consensus 408 ~~~~iL~~SATp~prtl~----~~~~g~-----------------------------------------~~~-------- 434 (681)
T PRK10917 408 ENPHVLVMTATPIPRTLA----MTAYGD-----------------------------------------LDV-------- 434 (681)
T ss_pred CCCCEEEEeCCCCHHHHH----HHHcCC-----------------------------------------Cce--------
Confidence 357899999999643221 110000 000
Q ss_pred HHhhcCCCCe--EEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHh
Q 003311 344 EVEKYLPGKS--QVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIR 421 (832)
Q Consensus 344 dv~~~LP~k~--e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~ 421 (832)
.+...+|+.. .....+.
T Consensus 435 s~i~~~p~~r~~i~~~~~~------------------------------------------------------------- 453 (681)
T PRK10917 435 SVIDELPPGRKPITTVVIP------------------------------------------------------------- 453 (681)
T ss_pred EEEecCCCCCCCcEEEEeC-------------------------------------------------------------
Confidence 0000122210 0000000
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchh--------HHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHhhcCCCC
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTR--------LMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDS 491 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~--------~ldiL~~~L~~~--g~~~~rldG~ts~~eR~~~i~~Fn~~~~ 491 (832)
..+...+.+.+.+....|++++|||.... .+..+.+.|... ++++..+||+++..+|..++++|..+..
T Consensus 454 -~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~ 532 (681)
T PRK10917 454 -DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEI 532 (681)
T ss_pred -cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 00111122223333357899999997532 233445555433 5789999999999999999999999876
Q ss_pred CceEEEEeccccccccCcccCCeEEEeCCCC-ChhhHHHHhhhccccCCcCcEEEEEEEe
Q 003311 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVRVFVLVS 550 (832)
Q Consensus 492 ~~~v~LlSt~agg~GLNL~~ad~VI~~D~~w-Np~~~~QAigRahRiGQ~k~V~V~rLit 550 (832)
+ +|+||.+.++|||++.+++||+++++. ....+.|+.||++|-|.. -++|.+..
T Consensus 533 ~---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~--g~~ill~~ 587 (681)
T PRK10917 533 D---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQ--SYCVLLYK 587 (681)
T ss_pred C---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCc--eEEEEEEC
Confidence 6 799999999999999999999999985 578899999999998865 44454553
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.91 E-value=2.7e-22 Score=242.18 Aligned_cols=330 Identities=17% Similarity=0.201 Sum_probs=216.7
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHH-HHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC-CC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI-AYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA-PS 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali-~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~-p~ 189 (832)
.+|++||.+++..++. +.+.|++.+||+|||+..+..+ ..+... ....+|||+|. .|..|-..++.++. .+
T Consensus 35 ~~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~~--~~~~aL~l~PtraLa~q~~~~l~~l~~~~ 108 (742)
T TIGR03817 35 HRPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALADD--PRATALYLAPTKALAADQLRAVRELTLRG 108 (742)
T ss_pred CcCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhhC--CCcEEEEEcChHHHHHHHHHHHHHhccCC
Confidence 3799999999987775 8899999999999999975444 444332 23478999997 66677888888875 35
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH--------HHHhhcCceEEEEeCCcccCC-hhhHHHHHH
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--------QYLKKVQWIYMIVDEGHRLKN-HECALAKTI 260 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~--------~~L~~~~w~~vIiDEaHriKN-~~sk~~kal 260 (832)
+.+.+|.|....... .. .. ...+|+|||++.+.... ..|. +..+|||||||.+.+ ..+.+...+
T Consensus 109 i~v~~~~Gdt~~~~r--~~-i~--~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vViDEah~~~g~fg~~~~~il 181 (742)
T TIGR03817 109 VRPATYDGDTPTEER--RW-AR--EHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVVIDECHSYRGVFGSHVALVL 181 (742)
T ss_pred eEEEEEeCCCCHHHH--HH-Hh--cCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEEEeChhhccCccHHHHHHHH
Confidence 778888886543221 11 11 45789999999986321 1222 457999999999965 334444444
Q ss_pred Hcc--------ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhh
Q 003311 261 SGY--------QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332 (832)
Q Consensus 261 ~~l--------~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~ 332 (832)
.++ .....+++|||. ++..++.. .+ +..++..
T Consensus 182 ~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~---~l--------------~g~~~~~--------------------- 221 (742)
T TIGR03817 182 RRLRRLCARYGASPVFVLASATT--ADPAAAAS---RL--------------IGAPVVA--------------------- 221 (742)
T ss_pred HHHHHHHHhcCCCCEEEEEecCC--CCHHHHHH---HH--------------cCCCeEE---------------------
Confidence 333 224679999995 23333311 11 1111000
Q ss_pred hhhhhhhhhHhHHh-hcCCCC-eEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCcccccc
Q 003311 333 IRPFILRRKKDEVE-KYLPGK-SQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGE 410 (832)
Q Consensus 333 L~pfllRR~k~dv~-~~LP~k-~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~ 410 (832)
+. ...|.. ....++.+. ... + ....+. ..|+
T Consensus 222 ------------i~~~~~~~~~~~~~~~~p~-~~~------~--------~~~~~~---------~~r~----------- 254 (742)
T TIGR03817 222 ------------VTEDGSPRGARTVALWEPP-LTE------L--------TGENGA---------PVRR----------- 254 (742)
T ss_pred ------------ECCCCCCcCceEEEEecCC-ccc------c--------cccccc---------cccc-----------
Confidence 00 001111 111111110 000 0 000000 0000
Q ss_pred ccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC--------CCeEEEEcCCCCHHHHHHH
Q 003311 411 YNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--------DFKFLRLDGSTKTEERGTL 482 (832)
Q Consensus 411 ~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--------g~~~~rldG~ts~~eR~~~ 482 (832)
.....+..+|..++ ..+.++||||+....++.|..+|... +.++..++|++++++|..+
T Consensus 255 ---------~~~~~~~~~l~~l~----~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~i 321 (742)
T TIGR03817 255 ---------SASAEAADLLADLV----AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRREL 321 (742)
T ss_pred ---------chHHHHHHHHHHHH----HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHH
Confidence 00112334444444 34789999999999999999887643 5678899999999999999
Q ss_pred HHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHH
Q 003311 483 LKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILE 560 (832)
Q Consensus 483 i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~ 560 (832)
+++|+++... +|++|+++++|||+...++||+|+.|-++..|.|++||++|.|+.. .++.++..+..|..++.
T Consensus 322 e~~f~~G~i~---vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g--~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 322 ERALRDGELL---GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGA--LVVLVARDDPLDTYLVH 394 (742)
T ss_pred HHHHHcCCce---EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCc--EEEEEeCCChHHHHHHh
Confidence 9999998765 7999999999999999999999999999999999999999998654 35556666777776554
No 50
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.91 E-value=1.4e-22 Score=251.35 Aligned_cols=356 Identities=18% Similarity=0.227 Sum_probs=210.9
Q ss_pred CCCchHHHHHHHHHHHHhhcc-CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCC
Q 003311 112 GGELRAYQLEGLQWMLSLFNN-NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS 189 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~-~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~ 189 (832)
+..|||||.+++..+...+.+ ..+++|++.||+|||+++++++..++.... .+++|||||. .|+.||..+|..+.+.
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~-~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKR-FRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCc-cCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 357999999999888876543 467899999999999999999888776543 4589999995 7899999999987532
Q ss_pred ce-EE--EEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH-------HhhcCceEEEEeCCcccCCh-------
Q 003311 190 IA-AV--VYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY-------LKKVQWIYMIVDEGHRLKNH------- 252 (832)
Q Consensus 190 ~~-v~--~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~-------L~~~~w~~vIiDEaHriKN~------- 252 (832)
.. .+ ++. .. .+..... .....|+|+|++++.+.... +..-.|++||||||||....
T Consensus 490 ~~~~~~~i~~-i~----~L~~~~~--~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 490 GDQTFASIYD-IK----GLEDKFP--EDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred cccchhhhhc-hh----hhhhhcc--cCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 11 11 111 11 1111111 14568999999998764311 22346889999999996310
Q ss_pred ----------hhHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHH
Q 003311 253 ----------ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQ 322 (832)
Q Consensus 253 ----------~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~ 322 (832)
.++..+.+..+. ..+|+|||||..+. +. .|+.|.... +
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t----~~------------------~FG~pv~~Y-----s---- 610 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT----TE------------------IFGEPVYTY-----S---- 610 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch----hH------------------HhCCeeEEe-----e----
Confidence 134445555554 58899999997432 11 122221100 0
Q ss_pred HHHHHHHHhhh-hhhhhhhhHhHHhhcCCCCeEEE-EE---cCCC-HHHHHHHHHHHHhcc-cccccCCCcchhHHHHHH
Q 003311 323 LLIIRRLHHVI-RPFILRRKKDEVEKYLPGKSQVI-LK---CDMS-AWQKVYYQQVTDVGR-VGLDTGTGKSKSLQNLSM 395 (832)
Q Consensus 323 ~~~~~~L~~~L-~pfllRR~k~dv~~~LP~k~e~~-v~---~~ms-~~Q~~lY~~i~~~~~-~~~~~~~~~~~~l~~~~~ 395 (832)
+.+.+ ..+++. ..|+..... +. +... ..+...|........ ..+. ..+.....
T Consensus 611 ------l~eAI~DG~Lv~--------~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~------d~~~~~~~ 670 (1123)
T PRK11448 611 ------YREAVIDGYLID--------HEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLE------DEVDFEVE 670 (1123)
T ss_pred ------HHHHHhcCCccc--------CcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCc------HHHhhhHH
Confidence 00000 011100 002211111 00 0000 011111211110000 0000 00000000
Q ss_pred HHHHhhCCCccccccccchhhHHHHhhcchHHH-HHHHHHhhhh-cCCeEEEEecchhHHHHHHHHHHhC------CC--
Q 003311 396 QLRKCCNHPYLFVGEYNMWRKEEIIRASGKFEL-LDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLN------DF-- 465 (832)
Q Consensus 396 ~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~-L~~lL~~l~~-~g~kvLIFsq~~~~ldiL~~~L~~~------g~-- 465 (832)
.+- ..++ ....... +..++..+.. .+.|+||||.....++.+.+.|... ++
T Consensus 671 ~~~------------------~~vi-~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~ 731 (1123)
T PRK11448 671 DFN------------------RRVI-TESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVED 731 (1123)
T ss_pred HHH------------------HHHh-hHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCc
Confidence 000 0000 0011111 1222222221 2479999999999988888776532 22
Q ss_pred -eEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCC---cC
Q 003311 466 -KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQ---KK 541 (832)
Q Consensus 466 -~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ---~k 541 (832)
.+..++|+++ ++..++++|.++..+ .+++|++.+++|+|.+.+++||++.+.-++..+.|++||+.|... |.
T Consensus 732 ~~v~~itg~~~--~~~~li~~Fk~~~~p--~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~ 807 (1123)
T PRK11448 732 DAVIKITGSID--KPDQLIRRFKNERLP--NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKT 807 (1123)
T ss_pred cceEEEeCCcc--chHHHHHHHhCCCCC--eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCc
Confidence 4567999886 578899999886543 689999999999999999999999999999999999999999875 55
Q ss_pred cEEEEEEEe
Q 003311 542 EVRVFVLVS 550 (832)
Q Consensus 542 ~V~V~rLit 550 (832)
.+.||.++.
T Consensus 808 ~f~I~D~vg 816 (1123)
T PRK11448 808 HFRIFDAVD 816 (1123)
T ss_pred eEEEEehHH
Confidence 588998863
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.91 E-value=2.5e-22 Score=245.11 Aligned_cols=308 Identities=17% Similarity=0.224 Sum_probs=209.4
Q ss_pred CCCchHHHHHHHHHHHHhhccC--CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNN--LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 188 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~--~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 188 (832)
+.+|.|+|..++..+..-...+ .+.+++.++|+|||.+++..+....... ..++|+||. .|..|+...|.++++
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~LA~Q~~~~f~~~~~ 525 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTLLAQQHFETFKERFA 525 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 4689999999999998754433 5679999999999999875554444332 478999997 667889999998875
Q ss_pred C--ceEEEEcCCh--hHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc-
Q 003311 189 S--IAAVVYDGRP--DERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY- 263 (832)
Q Consensus 189 ~--~~v~~~~g~~--~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l- 263 (832)
. +.+.++.|.. .++......+.. +..+|||+|+..+.+.. .-.+..+|||||+|++.. .....+..+
T Consensus 526 ~~~i~v~~Lsg~~~~~e~~~~~~~l~~--g~~dIVIGTp~ll~~~v---~f~~L~llVIDEahrfgv---~~~~~L~~~~ 597 (926)
T TIGR00580 526 NFPVTIELLSRFRSAKEQNEILKELAS--GKIDILIGTHKLLQKDV---KFKDLGLLIIDEEQRFGV---KQKEKLKELR 597 (926)
T ss_pred cCCcEEEEEeccccHHHHHHHHHHHHc--CCceEEEchHHHhhCCC---CcccCCEEEeecccccch---hHHHHHHhcC
Confidence 4 4555555533 233333333332 57899999997664321 122467999999999742 333445444
Q ss_pred ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHh
Q 003311 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343 (832)
Q Consensus 264 ~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~ 343 (832)
.....++|||||+...+.. ++.....+.++
T Consensus 598 ~~~~vL~~SATpiprtl~~--~l~g~~d~s~I------------------------------------------------ 627 (926)
T TIGR00580 598 TSVDVLTLSATPIPRTLHM--SMSGIRDLSII------------------------------------------------ 627 (926)
T ss_pred CCCCEEEEecCCCHHHHHH--HHhcCCCcEEE------------------------------------------------
Confidence 3567899999997543221 11111100000
Q ss_pred HHhhcCCCCeEE---EEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHH
Q 003311 344 EVEKYLPGKSQV---ILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 420 (832)
Q Consensus 344 dv~~~LP~k~e~---~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~ 420 (832)
. .|+.... ...++.+.
T Consensus 628 ---~-~~p~~R~~V~t~v~~~~~--------------------------------------------------------- 646 (926)
T TIGR00580 628 ---A-TPPEDRLPVRTFVMEYDP--------------------------------------------------------- 646 (926)
T ss_pred ---e-cCCCCccceEEEEEecCH---------------------------------------------------------
Confidence 0 0110000 00000000
Q ss_pred hhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHh--CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 003311 421 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL--NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 498 (832)
Q Consensus 421 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~--~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~Ll 498 (832)
......++..+ ..|.+++|||+....++.+...|.. .++++..+||.++..+|..++++|..+..+ +||
T Consensus 647 -----~~i~~~i~~el-~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~---ILV 717 (926)
T TIGR00580 647 -----ELVREAIRREL-LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQ---VLV 717 (926)
T ss_pred -----HHHHHHHHHHH-HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCC---EEE
Confidence 00001111122 3478999999999999999999986 488999999999999999999999998876 799
Q ss_pred eccccccccCcccCCeEEEeCCCC-ChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 499 STRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 499 St~agg~GLNL~~ad~VI~~D~~w-Np~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
||.+.++|||++.+++||+++.+. ....+.|++||++|-|.. -.+|-|+..+
T Consensus 718 aT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~~ 770 (926)
T TIGR00580 718 CTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPHQ 770 (926)
T ss_pred ECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECCc
Confidence 999999999999999999999864 567899999999998754 4556666543
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.90 E-value=4e-22 Score=248.11 Aligned_cols=305 Identities=18% Similarity=0.238 Sum_probs=205.1
Q ss_pred CCCchHHHHHHHHHHHHhhcc--CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC
Q 003311 112 GGELRAYQLEGLQWMLSLFNN--NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 188 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~--~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 188 (832)
+.++.+.|.+++.-++.-... +.+.+++.+||+|||.+++-++...... ...+||+||. .|..|....|.+++.
T Consensus 598 ~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~Q~~~~f~~~~~ 674 (1147)
T PRK10689 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQQHYDNFRDRFA 674 (1147)
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHhhc
Confidence 358999999999988875432 3568999999999999876444333332 3579999997 556788888887664
Q ss_pred C--ceEEEEcC--ChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc-
Q 003311 189 S--IAAVVYDG--RPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY- 263 (832)
Q Consensus 189 ~--~~v~~~~g--~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l- 263 (832)
. +.+.++.| +..++......+.. +..+|||+|++.+.+. +.-.++.+|||||+|++.. .....++.+
T Consensus 675 ~~~v~i~~l~g~~s~~e~~~il~~l~~--g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~---~~~e~lk~l~ 746 (1147)
T PRK10689 675 NWPVRIEMLSRFRSAKEQTQILAEAAE--GKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGV---RHKERIKAMR 746 (1147)
T ss_pred cCCceEEEEECCCCHHHHHHHHHHHHh--CCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcch---hHHHHHHhcC
Confidence 3 44544544 33333333332222 5789999999877532 1223578999999999843 223445544
Q ss_pred ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHh
Q 003311 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343 (832)
Q Consensus 264 ~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~ 343 (832)
.....+++||||+...+.- ++..+.+|. ++.
T Consensus 747 ~~~qvLl~SATpiprtl~l--~~~gl~d~~-------------------------------------------~I~---- 777 (1147)
T PRK10689 747 ADVDILTLTATPIPRTLNM--AMSGMRDLS-------------------------------------------IIA---- 777 (1147)
T ss_pred CCCcEEEEcCCCCHHHHHH--HHhhCCCcE-------------------------------------------EEe----
Confidence 3567899999997644321 111111110 000
Q ss_pred HHhhcCCCCeE---EEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHH
Q 003311 344 EVEKYLPGKSQ---VILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 420 (832)
Q Consensus 344 dv~~~LP~k~e---~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~ 420 (832)
.|+... ..+.....
T Consensus 778 -----~~p~~r~~v~~~~~~~~---------------------------------------------------------- 794 (1147)
T PRK10689 778 -----TPPARRLAVKTFVREYD---------------------------------------------------------- 794 (1147)
T ss_pred -----cCCCCCCCceEEEEecC----------------------------------------------------------
Confidence 011100 00000000
Q ss_pred hhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 003311 421 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 498 (832)
Q Consensus 421 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~Ll 498 (832)
.......++.++. .+++++|||+....++.+...|... ++.+..+||.++..+|..++.+|.++..+ +|+
T Consensus 795 ----~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~---VLV 866 (1147)
T PRK10689 795 ----SLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLV 866 (1147)
T ss_pred ----cHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC---EEE
Confidence 0001112233332 3678999999999999999999765 78999999999999999999999998876 799
Q ss_pred eccccccccCcccCCeEEEeCCC-CChhhHHHHhhhccccCCcCcEEEEEEE
Q 003311 499 STRAGGLGLNLQTADTVIIFDSD-WNPQMDQQAEDRAHRIGQKKEVRVFVLV 549 (832)
Q Consensus 499 St~agg~GLNL~~ad~VI~~D~~-wNp~~~~QAigRahRiGQ~k~V~V~rLi 549 (832)
+|.+.++|||++.+++||+.+++ ++..++.|++||++|.|.+- .+|-+.
T Consensus 867 aTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~ 916 (1147)
T PRK10689 867 CTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLT 916 (1147)
T ss_pred ECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce--EEEEEe
Confidence 99999999999999999988775 67788999999999988654 445444
No 53
>PRK02362 ski2-like helicase; Provisional
Probab=99.89 E-value=1.1e-21 Score=238.68 Aligned_cols=320 Identities=18% Similarity=0.155 Sum_probs=203.8
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC-Cc
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SI 190 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p-~~ 190 (832)
.+|+|+|.+++.-+ +..+.+.+++.+||+|||+.+...+...+.. .+++|+|+|. .++.|+..+|.++.+ ++
T Consensus 22 ~~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 22 EELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred CcCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 37999999999743 3357899999999999999986544433332 4579999996 788999999988754 57
Q ss_pred eEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCCh--hhHHHHHHHcc---
Q 003311 191 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTISGY--- 263 (832)
Q Consensus 191 ~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~--~sk~~kal~~l--- 263 (832)
++..+.|........ ....+|+|+|++.+..-... ..-...++|||||+|.+.+. +..+...+..+
T Consensus 96 ~v~~~tGd~~~~~~~-------l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~ 168 (737)
T PRK02362 96 RVGISTGDYDSRDEW-------LGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRL 168 (737)
T ss_pred EEEEEeCCcCccccc-------cCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhc
Confidence 788888865432211 14679999999987442211 00124689999999999653 22222222222
Q ss_pred -ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhH
Q 003311 264 -QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 342 (832)
Q Consensus 264 -~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k 342 (832)
...+.++||||+ .+..++...++ ...+.+ ..+|.-+
T Consensus 169 ~~~~qii~lSATl--~n~~~la~wl~---~~~~~~----------------------------------~~rpv~l---- 205 (737)
T PRK02362 169 NPDLQVVALSATI--GNADELADWLD---AELVDS----------------------------------EWRPIDL---- 205 (737)
T ss_pred CCCCcEEEEcccC--CCHHHHHHHhC---CCcccC----------------------------------CCCCCCC----
Confidence 345789999996 24455443332 111100 0011110
Q ss_pred hHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhh
Q 003311 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 422 (832)
Q Consensus 343 ~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~ 422 (832)
...+... .. + .... .. + .+ ..
T Consensus 206 -----------~~~v~~~-~~--------~------~~~~---~~----------~------~~--------------~~ 226 (737)
T PRK02362 206 -----------REGVFYG-GA--------I------HFDD---SQ----------R------EV--------------EV 226 (737)
T ss_pred -----------eeeEecC-Ce--------e------cccc---cc----------c------cC--------------CC
Confidence 0000000 00 0 0000 00 0 00 00
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC------------------------------------CCe
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN------------------------------------DFK 466 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~------------------------------------g~~ 466 (832)
..+.. ...++......++++||||+....++.+...|... ...
T Consensus 227 ~~~~~-~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 227 PSKDD-TLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred ccchH-HHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 00101 11112222236789999999988777666655321 135
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE----eC-----CCCChhhHHHHhhhcccc
Q 003311 467 FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FD-----SDWNPQMDQQAEDRAHRI 537 (832)
Q Consensus 467 ~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~----~D-----~~wNp~~~~QAigRahRi 537 (832)
+..+||+++..+|..+.+.|+.+... +|++|.+++.|+|++...+||. || .|.++..+.|++|||+|.
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~---VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIK---VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCe---EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 77889999999999999999998765 7999999999999999887776 77 578899999999999999
Q ss_pred CCcCcEEEEEEEeC
Q 003311 538 GQKKEVRVFVLVSV 551 (832)
Q Consensus 538 GQ~k~V~V~rLit~ 551 (832)
|....-.++-++..
T Consensus 383 g~d~~G~~ii~~~~ 396 (737)
T PRK02362 383 GLDPYGEAVLLAKS 396 (737)
T ss_pred CCCCCceEEEEecC
Confidence 98766666666644
No 54
>PRK01172 ski2-like helicase; Provisional
Probab=99.88 E-value=1.4e-20 Score=227.14 Aligned_cols=309 Identities=20% Similarity=0.188 Sum_probs=196.2
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC-Cc
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SI 190 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p-~~ 190 (832)
.+|+|+|.+++..+. .+.+.+++.+||+|||+++...+...+.. .+.+|+|+|. +++.++.++|.++.. +.
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 479999999998754 47889999999999999987555444433 3578999996 778889999987643 45
Q ss_pred eEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH----HHHhhcCceEEEEeCCcccCCh--hhHHHHHHH---
Q 003311 191 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR----QYLKKVQWIYMIVDEGHRLKNH--ECALAKTIS--- 261 (832)
Q Consensus 191 ~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~----~~L~~~~w~~vIiDEaHriKN~--~sk~~kal~--- 261 (832)
.+....|........ . ..++|+|+|++.+..-. ..+. ++++|||||+|.+.+. +..+...+.
T Consensus 94 ~v~~~~G~~~~~~~~----~---~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEaH~l~d~~rg~~le~ll~~~~ 164 (674)
T PRK01172 94 RVKISIGDYDDPPDF----I---KRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEIHIIGDEDRGPTLETVLSSAR 164 (674)
T ss_pred eEEEEeCCCCCChhh----h---ccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecchhccCCCccHHHHHHHHHHH
Confidence 666666654322111 1 46799999998764321 2222 4689999999999643 222222222
Q ss_pred cc-ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 003311 262 GY-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340 (832)
Q Consensus 262 ~l-~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR 340 (832)
.+ ...+.++||||+- +..++ .+|++.+.-. ...+|
T Consensus 165 ~~~~~~riI~lSATl~--n~~~l------------------a~wl~~~~~~-------------------~~~r~----- 200 (674)
T PRK01172 165 YVNPDARILALSATVS--NANEL------------------AQWLNASLIK-------------------SNFRP----- 200 (674)
T ss_pred hcCcCCcEEEEeCccC--CHHHH------------------HHHhCCCccC-------------------CCCCC-----
Confidence 22 3456799999972 33333 3333211000 00000
Q ss_pred hHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHH
Q 003311 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 420 (832)
Q Consensus 341 ~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~ 420 (832)
.|-.. .++... ..| .. ....
T Consensus 201 --------vpl~~-~i~~~~------~~~----------~~-~~~~---------------------------------- 220 (674)
T PRK01172 201 --------VPLKL-GILYRK------RLI----------LD-GYER---------------------------------- 220 (674)
T ss_pred --------CCeEE-EEEecC------eee----------ec-cccc----------------------------------
Confidence 11110 011000 000 00 0000
Q ss_pred hhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC-------------------------CCeEEEEcCCCC
Q 003311 421 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-------------------------DFKFLRLDGSTK 475 (832)
Q Consensus 421 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-------------------------g~~~~rldG~ts 475 (832)
.+. .+..++.+....++++|||+.....++.+...|... ...+..+||+++
T Consensus 221 ---~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~ 296 (674)
T PRK01172 221 ---SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLS 296 (674)
T ss_pred ---ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCC
Confidence 000 022233343456789999999988777777666432 123677899999
Q ss_pred HHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCC---------CCChhhHHHHhhhccccCCcCcEEEE
Q 003311 476 TEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDS---------DWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 476 ~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~---------~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
.++|..+.+.|+.+... +|++|.+++.|+|++. .+||++|. ++++..+.|++|||+|.|.......+
T Consensus 297 ~~eR~~ve~~f~~g~i~---VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~ 372 (674)
T PRK01172 297 NEQRRFIEEMFRNRYIK---VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGY 372 (674)
T ss_pred HHHHHHHHHHHHcCCCe---EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEE
Confidence 99999999999987655 7999999999999986 57777664 35788899999999999976664444
Q ss_pred EEE
Q 003311 547 VLV 549 (832)
Q Consensus 547 rLi 549 (832)
-++
T Consensus 373 i~~ 375 (674)
T PRK01172 373 IYA 375 (674)
T ss_pred EEe
Confidence 443
No 55
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.87 E-value=4.5e-20 Score=206.40 Aligned_cols=315 Identities=17% Similarity=0.185 Sum_probs=195.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCceEEEEcCChhHH-----------H
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDER-----------K 203 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r-----------~ 203 (832)
.++..+||+|||.+++.++...... ...+++++|+|. +++.|+.+.+..++.. .+..++|..... .
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 4788999999999998887766543 335689999995 7889999999998754 344444433210 0
Q ss_pred HHHHHHHhh---cCCccEEecCHHHHHHhHHH--------HhhcCceEEEEeCCcccCChhh-HHHHHHHccc--cceEE
Q 003311 204 AMREEFFSE---RGRFNVLITHYDLIMRDRQY--------LKKVQWIYMIVDEGHRLKNHEC-ALAKTISGYQ--IQRRL 269 (832)
Q Consensus 204 ~~~~~~~~~---~~~~dVvItTye~l~~d~~~--------L~~~~w~~vIiDEaHriKN~~s-k~~kal~~l~--~~~rl 269 (832)
......... ....+++++|++.+...... +..+...+|||||+|.+..... .+...+..+. ....+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 011111000 12357999999987654322 2223447899999999975322 2333333332 34679
Q ss_pred EeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHhhcC
Q 003311 270 LLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYL 349 (832)
Q Consensus 270 lLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~~~L 349 (832)
++|||+- ..+.++ +.-..... .....
T Consensus 160 ~~SATlp-~~l~~~---~~~~~~~~--------------------------------------------------~~~~~ 185 (358)
T TIGR01587 160 LMSATLP-KFLKEY---AEKIGYVE--------------------------------------------------FNEPL 185 (358)
T ss_pred EEecCch-HHHHHH---HhcCCCcc--------------------------------------------------cccCC
Confidence 9999962 111111 00000000 00000
Q ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHH
Q 003311 350 PGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELL 429 (832)
Q Consensus 350 P~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L 429 (832)
+.... +..-.|++..... ....|...+
T Consensus 186 ~~~~~-------------------------------------------~~~~~~~~~~~~~----------~~~~~~~~l 212 (358)
T TIGR01587 186 DLKEE-------------------------------------------RRFERHRFIKIES----------DKVGEISSL 212 (358)
T ss_pred CCccc-------------------------------------------cccccccceeecc----------ccccCHHHH
Confidence 00000 0000111100000 012344555
Q ss_pred HHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCC--eEEEEcCCCCHHHHHH----HHHhhcCCCCCceEEEEecccc
Q 003311 430 DRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDF--KFLRLDGSTKTEERGT----LLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 430 ~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~--~~~rldG~ts~~eR~~----~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
..++..+ ..+.++||||+....++.+...|...+. .+..+||.++..+|.. +++.|..+... +|+||.++
T Consensus 213 ~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~---ilvaT~~~ 288 (358)
T TIGR01587 213 ERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKF---VIVATQVI 288 (358)
T ss_pred HHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCe---EEEECcch
Confidence 5555433 3578999999999999999999987765 5999999999999976 48999886544 79999999
Q ss_pred ccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcC----cEEEEEEEeCC---CHHHHHHHHHHHHH
Q 003311 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKK----EVRVFVLVSVG---SIEEVILERAKQKM 566 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k----~V~V~rLit~~---siEe~Il~~~~~K~ 566 (832)
++|||+. +++||.++.+ +..++|++||++|.|.+. .|.||.....+ ..+..++++-.+++
T Consensus 289 ~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~~ 355 (358)
T TIGR01587 289 EASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQKL 355 (358)
T ss_pred hceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHHH
Confidence 9999994 8999988765 889999999999999764 35555554443 44556666655543
No 56
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.3e-20 Score=216.07 Aligned_cols=306 Identities=21% Similarity=0.286 Sum_probs=227.8
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 191 (832)
..+||-|.+++..++. +.+.|...+||.||++..- |-.++. .|.+|||.|+ +|+.+..+.+.... +.
T Consensus 16 ~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQ--iPAll~----~G~TLVVSPLiSLM~DQV~~l~~~G--i~ 83 (590)
T COG0514 16 ASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQ--IPALLL----EGLTLVVSPLISLMKDQVDQLEAAG--IR 83 (590)
T ss_pred cccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhh--hHHHhc----CCCEEEECchHHHHHHHHHHHHHcC--ce
Confidence 4789999999998887 8999999999999998652 222222 5799999996 88888888888865 44
Q ss_pred EEEEcC--ChhHHHHHHHHHHhhcCCccEEecCHHHHHHh--HHHHhhcCceEEEEeCCcccCChh-------hHHHHHH
Q 003311 192 AVVYDG--RPDERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKNHE-------CALAKTI 260 (832)
Q Consensus 192 v~~~~g--~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d--~~~L~~~~w~~vIiDEaHriKN~~-------sk~~kal 260 (832)
+....+ +..++......+.. +.++++..++|.+... .+.|...+..+++|||||.+..++ ..+....
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~--g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~ 161 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKS--GQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLR 161 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhc--CceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHH
Confidence 444444 45566666555544 6789999999999765 466778899999999999986543 3555666
Q ss_pred HccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 003311 261 SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340 (832)
Q Consensus 261 ~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR 340 (832)
..|+...+++||||--.--..|+...|..-.+.+|... |..|.-
T Consensus 162 ~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s------fdRpNi------------------------------ 205 (590)
T COG0514 162 AGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS------FDRPNL------------------------------ 205 (590)
T ss_pred hhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec------CCCchh------------------------------
Confidence 77788899999999766666666666655444332211 111100
Q ss_pred hHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHH
Q 003311 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 420 (832)
Q Consensus 341 ~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~ 420 (832)
|-.+....
T Consensus 206 ----------------------------~~~v~~~~-------------------------------------------- 213 (590)
T COG0514 206 ----------------------------ALKVVEKG-------------------------------------------- 213 (590)
T ss_pred ----------------------------hhhhhhcc--------------------------------------------
Confidence 00000000
Q ss_pred hhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 003311 421 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 500 (832)
Q Consensus 421 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt 500 (832)
..-.++.+|.. .....+...||||......+.+..+|...|+....+||+++.++|+.+-++|..++.+ ++++|
T Consensus 214 ~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~---iiVAT 287 (590)
T COG0514 214 EPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK---VMVAT 287 (590)
T ss_pred cHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc---EEEEe
Confidence 00001111111 1223455689999999999999999999999999999999999999999999998876 79999
Q ss_pred cccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEE
Q 003311 501 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 501 ~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
.|.|.|||-++...|||||+|-++..|.|-+|||+|-|....+..+
T Consensus 288 ~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill 333 (590)
T COG0514 288 NAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILL 333 (590)
T ss_pred ccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEe
Confidence 9999999999999999999999999999999999999977765443
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.87 E-value=2.3e-20 Score=226.54 Aligned_cols=317 Identities=19% Similarity=0.176 Sum_probs=200.6
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHH-HHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC-C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-S 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqai-ali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p-~ 189 (832)
.+|+|+|.+++.- .+..+.+.|++.+||+|||+.+. +++..+... .+.+|+|+|. .++.|+..+|..|.. +
T Consensus 22 ~~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 22 EELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 4799999999973 23358899999999999999984 444444432 3579999996 778889988887743 5
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH----HHhhcCceEEEEeCCcccCC--hhhHHHHHHHcc
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ----YLKKVQWIYMIVDEGHRLKN--HECALAKTISGY 263 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~----~L~~~~w~~vIiDEaHriKN--~~sk~~kal~~l 263 (832)
..+..+.|........ .+.++|+|+|++.+..... .+ .+..+|||||+|.+.. .+..+...+..+
T Consensus 96 ~~v~~~~Gd~~~~~~~-------~~~~~IiV~Tpe~~~~ll~~~~~~l--~~l~lvViDE~H~l~~~~rg~~le~il~~l 166 (720)
T PRK00254 96 LRVAMTTGDYDSTDEW-------LGKYDIIIATAEKFDSLLRHGSSWI--KDVKLVVADEIHLIGSYDRGATLEMILTHM 166 (720)
T ss_pred CEEEEEeCCCCCchhh-------hccCCEEEEcHHHHHHHHhCCchhh--hcCCEEEEcCcCccCCccchHHHHHHHHhc
Confidence 6777787765432211 1568999999998754321 22 2568999999999964 344555555555
Q ss_pred -ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhH
Q 003311 264 -QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 342 (832)
Q Consensus 264 -~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k 342 (832)
...+.++||||+- +..++-..+ ....+.. ..+|.
T Consensus 167 ~~~~qiI~lSATl~--n~~~la~wl---~~~~~~~----------------------------------~~rpv------ 201 (720)
T PRK00254 167 LGRAQILGLSATVG--NAEELAEWL---NAELVVS----------------------------------DWRPV------ 201 (720)
T ss_pred CcCCcEEEEEccCC--CHHHHHHHh---CCccccC----------------------------------CCCCC------
Confidence 3467899999972 345443322 1111100 00110
Q ss_pred hHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhh
Q 003311 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 422 (832)
Q Consensus 343 ~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~ 422 (832)
|-... +... .......+ ....+
T Consensus 202 -------~l~~~--~~~~---------------~~~~~~~~--~~~~~-------------------------------- 223 (720)
T PRK00254 202 -------KLRKG--VFYQ---------------GFLFWEDG--KIERF-------------------------------- 223 (720)
T ss_pred -------cceee--EecC---------------CeeeccCc--chhcc--------------------------------
Confidence 00000 0000 00000000 00000
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHh---------------------------------CCCeEEE
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL---------------------------------NDFKFLR 469 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~---------------------------------~g~~~~r 469 (832)
...+..++......+.++||||.....++.+...|.. ....+..
T Consensus 224 ---~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~ 300 (720)
T PRK00254 224 ---PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAF 300 (720)
T ss_pred ---hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEE
Confidence 0001122222334578999999988766554433311 1235788
Q ss_pred EcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE-------eCCCC-ChhhHHHHhhhccccCCcC
Q 003311 470 LDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII-------FDSDW-NPQMDQQAEDRAHRIGQKK 541 (832)
Q Consensus 470 ldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~-------~D~~w-Np~~~~QAigRahRiGQ~k 541 (832)
+||+++.++|..+.+.|+.+... +|++|.+++.|+|++..+.||. ++.+. ....+.|++|||+|.|...
T Consensus 301 hHagl~~~eR~~ve~~F~~G~i~---VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~ 377 (720)
T PRK00254 301 HHAGLGRTERVLIEDAFREGLIK---VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDE 377 (720)
T ss_pred eCCCCCHHHHHHHHHHHHCCCCe---EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCC
Confidence 99999999999999999998765 7999999999999998887774 33333 3457899999999999777
Q ss_pred cEEEEEEEeCCC
Q 003311 542 EVRVFVLVSVGS 553 (832)
Q Consensus 542 ~V~V~rLit~~s 553 (832)
.-.++-++....
T Consensus 378 ~G~~ii~~~~~~ 389 (720)
T PRK00254 378 VGEAIIVATTEE 389 (720)
T ss_pred CceEEEEecCcc
Confidence 766776666543
No 58
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.3e-19 Score=197.89 Aligned_cols=329 Identities=19% Similarity=0.246 Sum_probs=219.8
Q ss_pred CCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHH-HHHHHHHHhcC--CCCCEEEEeCCCc----hHHHHHH
Q 003311 110 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENKG--VTGPHVIVAPKAV----LPNWINE 182 (832)
Q Consensus 110 l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqai-ali~~l~~~~~--~~~p~LIV~P~sl----l~qW~~E 182 (832)
+.-..+.|.|...+--.+- +..-+-|..+|+|||...+ -++..|+.... ..-++||+||.-- +.+-...
T Consensus 199 lGy~~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~q 274 (691)
T KOG0338|consen 199 LGYKKPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQ 274 (691)
T ss_pred cCCCCCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHH
Confidence 3335888899988875554 6666778999999998754 34444544322 2346899999743 3445566
Q ss_pred HHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHh---hcCceEEEEeCCcccCCh--hhHHH
Q 003311 183 FSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK---KVQWIYMIVDEGHRLKNH--ECALA 257 (832)
Q Consensus 183 ~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~---~~~w~~vIiDEaHriKN~--~sk~~ 257 (832)
+..|+ ++.+.+..|.-+.+.+ ...+. ..+||||.|++.++.+...-. --...++|+|||.||... ...+.
T Consensus 275 laqFt-~I~~~L~vGGL~lk~Q--E~~LR--s~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademn 349 (691)
T KOG0338|consen 275 LAQFT-DITVGLAVGGLDLKAQ--EAVLR--SRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMN 349 (691)
T ss_pred HHhhc-cceeeeeecCccHHHH--HHHHh--hCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHH
Confidence 77777 4777777776655433 22222 679999999999987754332 334668999999999643 23444
Q ss_pred HHHHcc-ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhh
Q 003311 258 KTISGY-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 336 (832)
Q Consensus 258 kal~~l-~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pf 336 (832)
..+... +.+..+|.|||- ...+.+|.+|- ++.|.
T Consensus 350 Eii~lcpk~RQTmLFSATM-teeVkdL~slS-----------------L~kPv--------------------------- 384 (691)
T KOG0338|consen 350 EIIRLCPKNRQTMLFSATM-TEEVKDLASLS-----------------LNKPV--------------------------- 384 (691)
T ss_pred HHHHhccccccceeehhhh-HHHHHHHHHhh-----------------cCCCe---------------------------
Confidence 444433 334458999984 23334443321 00000
Q ss_pred hhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhh
Q 003311 337 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK 416 (832)
Q Consensus 337 llRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~ 416 (832)
.+++..+. .....|..-+.++|- +
T Consensus 385 -------------------rifvd~~~---------------------~~a~~LtQEFiRIR~--~-------------- 408 (691)
T KOG0338|consen 385 -------------------RIFVDPNK---------------------DTAPKLTQEFIRIRP--K-------------- 408 (691)
T ss_pred -------------------EEEeCCcc---------------------ccchhhhHHHheecc--c--------------
Confidence 01111000 000000000000000 0
Q ss_pred HHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEE
Q 003311 417 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMF 496 (832)
Q Consensus 417 ~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~ 496 (832)
+..-+-.+|..++..+. ..+++||.+....+..|.-.|...|+++..+||+.++.+|.+.++.|+....+ +
T Consensus 409 ----re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid---v 479 (691)
T KOG0338|consen 409 ----REGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID---V 479 (691)
T ss_pred ----cccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC---E
Confidence 01112234445555544 45899999999999999999999999999999999999999999999998877 8
Q ss_pred EEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHH
Q 003311 497 LLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILER 561 (832)
Q Consensus 497 LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~ 561 (832)
||+|+.+++||++..+.+||+|+.|-+-..|++|+||..|.| +.-+.+.|+.++ |.+|+.-
T Consensus 480 LiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAG--RaGrsVtlvgE~--dRkllK~ 540 (691)
T KOG0338|consen 480 LIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAG--RAGRSVTLVGES--DRKLLKE 540 (691)
T ss_pred EEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcc--cCcceEEEeccc--cHHHHHH
Confidence 999999999999999999999999999999999999999988 445666788777 6666643
No 59
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.84 E-value=7.5e-19 Score=210.58 Aligned_cols=363 Identities=13% Similarity=0.094 Sum_probs=205.5
Q ss_pred CCchHHHHHHHHHHHHhhcc------CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHh
Q 003311 113 GELRAYQLEGLQWMLSLFNN------NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFST 185 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~------~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k 185 (832)
.-+|+||..||+-++....+ ..+|++++.+|+|||++++.++..++... ...++|||||. .|..||.++|..
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~-~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL-KNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc-CCCeEEEEECcHHHHHHHHHHHHh
Confidence 46899999999999887654 45799999999999999999988877543 34578999995 789999999999
Q ss_pred hCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH-HHHhhc----CceEEEEeCCcccCChhhHHHHHH
Q 003311 186 WAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR-QYLKKV----QWIYMIVDEGHRLKNHECALAKTI 260 (832)
Q Consensus 186 ~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~-~~L~~~----~w~~vIiDEaHriKN~~sk~~kal 260 (832)
+.+... .-.++. ..+...+.. ....|+|||++.+.+.. ..+... ...+||+|||||... ......+
T Consensus 316 ~~~~~~--~~~~s~---~~L~~~l~~--~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l 386 (667)
T TIGR00348 316 LQKDCA--ERIESI---AELKRLLEK--DDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--GELAKNL 386 (667)
T ss_pred hCCCCC--cccCCH---HHHHHHHhC--CCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--hHHHHHH
Confidence 975321 111222 222222211 34679999999997532 222222 123899999999743 2344555
Q ss_pred -HccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhh
Q 003311 261 -SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339 (832)
Q Consensus 261 -~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllR 339 (832)
..++..++++|||||+...-.+-+..+.. .|+.++... .
T Consensus 387 ~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~--------------~fg~~i~~Y------------------------~-- 426 (667)
T TIGR00348 387 KKALKNASFFGFTGTPIFKKDRDTSLTFAY--------------VFGRYLHRY------------------------F-- 426 (667)
T ss_pred HhhCCCCcEEEEeCCCcccccccccccccC--------------CCCCeEEEe------------------------e--
Confidence 56778899999999985421111111110 011111100 0
Q ss_pred hhHhHHhhc-CCCCeEEEEEc--CCCHHH-HHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchh
Q 003311 340 RKKDEVEKY-LPGKSQVILKC--DMSAWQ-KVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 415 (832)
Q Consensus 340 R~k~dv~~~-LP~k~e~~v~~--~ms~~Q-~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~ 415 (832)
.++-+... +.+.....+.+ .++... ...+..........+. ......+......+..+.
T Consensus 427 -~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~-------------- 489 (667)
T TIGR00348 427 -ITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIR--EITKESLKEKLQKTKKIL-------------- 489 (667)
T ss_pred -HHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhcccc--HHHHHHHHHHHHHHHhhh--------------
Confidence 00011110 11111111111 111110 1111111110000000 000001111111111111
Q ss_pred hHHHHhhcchHHHHHH-HHHhh----hhcCCeEEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHH--------
Q 003311 416 KEEIIRASGKFELLDR-LLPKL----RKSGHRVLLFSQMTRLMDILEIYLKLN-----DFKFLRLDGSTKTE-------- 477 (832)
Q Consensus 416 ~~~l~~~S~Kl~~L~~-lL~~l----~~~g~kvLIFsq~~~~ldiL~~~L~~~-----g~~~~rldG~ts~~-------- 477 (832)
.+...+..+.+ ++..+ ...+.|.+|||.+...+..+...|... +...+.++|+.+.+
T Consensus 490 -----~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~ 564 (667)
T TIGR00348 490 -----FNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNK 564 (667)
T ss_pred -----cChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHH
Confidence 11111112111 11111 123589999999999888887776433 34556777765433
Q ss_pred -------------HHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhcccc-CCcC-c
Q 003311 478 -------------ERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI-GQKK-E 542 (832)
Q Consensus 478 -------------eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRi-GQ~k-~ 542 (832)
....++++|+.++ +.. +||+++...+|+|.+.++++++.-|--+ +..+|++||+.|+ +..| .
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~Fk~~~-~~~-ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~ 641 (667)
T TIGR00348 565 HIRTKFDKSDGFEIYYKDLERFKKEE-NPK-LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTF 641 (667)
T ss_pred HhccccccchhhhHHHHHHHHhcCCC-Cce-EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCC
Confidence 2347899998753 233 5777799999999999999999887665 5689999999995 5444 4
Q ss_pred EEEEEEEe
Q 003311 543 VRVFVLVS 550 (832)
Q Consensus 543 V~V~rLit 550 (832)
..|+.++.
T Consensus 642 g~IvDy~g 649 (667)
T TIGR00348 642 GLIVDYRG 649 (667)
T ss_pred EEEEECcC
Confidence 78888875
No 60
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.1e-19 Score=185.94 Aligned_cols=316 Identities=17% Similarity=0.230 Sum_probs=220.9
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHH-HHHHHHHHHHhcCCCCCEEEEeCCC-chHHHHHHHHhhCC--C
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQ-TIALIAYLLENKGVTGPHVIVAPKA-VLPNWINEFSTWAP--S 189 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiq-aiali~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p--~ 189 (832)
++...|..++-.++. +.+.|.....|+|||.+ +|+++..+-- ....-.+||+.|.- +..|-..-+..... +
T Consensus 49 kPS~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~-~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn 123 (400)
T KOG0328|consen 49 KPSAIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDI-SVRETQALILSPTRELAVQIQKVILALGDYMN 123 (400)
T ss_pred CchHHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeeccc-ccceeeEEEecChHHHHHHHHHHHHHhccccc
Confidence 444578888888886 88899999999999986 3454433321 11223579999974 45555555555543 3
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh--HHHHhhcCceEEEEeCCcccCC--hhhHHHHHHHccc-
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKN--HECALAKTISGYQ- 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d--~~~L~~~~w~~vIiDEaHriKN--~~sk~~kal~~l~- 264 (832)
+.+...-|.+..-..++... -..+||.-|+..+.+- ...|......++|+|||..+.| ...+.+...+.++
T Consensus 124 vq~hacigg~n~gedikkld----~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~ 199 (400)
T KOG0328|consen 124 VQCHACIGGKNLGEDIKKLD----YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPP 199 (400)
T ss_pred ceEEEEecCCccchhhhhhc----ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCC
Confidence 45555555554333333222 3567999998887653 3446666788999999999955 4567888888886
Q ss_pred cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhH
Q 003311 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344 (832)
Q Consensus 265 ~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~d 344 (832)
....+++|||-- .|+..+.++.
T Consensus 200 ~~Qvv~~SATlp----~eilemt~kf------------------------------------------------------ 221 (400)
T KOG0328|consen 200 GAQVVLVSATLP----HEILEMTEKF------------------------------------------------------ 221 (400)
T ss_pred CceEEEEeccCc----HHHHHHHHHh------------------------------------------------------
Confidence 677889999952 2333333222
Q ss_pred HhhcCCCCeEEEEEc-CCCHHH-HHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhh
Q 003311 345 VEKYLPGKSQVILKC-DMSAWQ-KVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 422 (832)
Q Consensus 345 v~~~LP~k~e~~v~~-~ms~~Q-~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~ 422 (832)
.|+.....+.- +++-+- +++|- ..+ ..
T Consensus 222 ----mtdpvrilvkrdeltlEgIKqf~v-------------------------------------~ve----------~E 250 (400)
T KOG0328|consen 222 ----MTDPVRILVKRDELTLEGIKQFFV-------------------------------------AVE----------KE 250 (400)
T ss_pred ----cCCceeEEEecCCCchhhhhhhee-------------------------------------eec----------hh
Confidence 22222222221 111110 00000 000 11
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
.=|+..|..+...+-- ...+|||+.....|+|.+.++..++.+..+||.++.++|.+++++|+.+.+. +|++|+.
T Consensus 251 ewKfdtLcdLYd~LtI--tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr---vLitTDV 325 (400)
T KOG0328|consen 251 EWKFDTLCDLYDTLTI--TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR---VLITTDV 325 (400)
T ss_pred hhhHhHHHHHhhhheh--heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce---EEEEech
Confidence 1266677777666533 4799999999999999999999999999999999999999999999999887 7999999
Q ss_pred cccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCH
Q 003311 503 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554 (832)
Q Consensus 503 gg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~si 554 (832)
-++|+++|.++.||.||.|-|+..|++|+||.+|.|.+- .++.||....+
T Consensus 326 waRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d~ 375 (400)
T KOG0328|consen 326 WARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDDL 375 (400)
T ss_pred hhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHHH
Confidence 999999999999999999999999999999999999654 55677766543
No 61
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.83 E-value=3.7e-19 Score=195.25 Aligned_cols=342 Identities=20% Similarity=0.267 Sum_probs=216.7
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHH-HHHHHHHHhc-------CCCCC-EEEEeCCC-chHHHHHHH
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENK-------GVTGP-HVIVAPKA-VLPNWINEF 183 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqai-ali~~l~~~~-------~~~~p-~LIV~P~s-ll~qW~~E~ 183 (832)
.+-|.|..++--+++ +++-|...|+|+|||...+ -++.++.... ..-|| .+|++|+- |..|-..|-
T Consensus 267 eptpIqR~aipl~lQ----~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGLQ----NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccchhc----cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 677889888876665 7888999999999995543 2222222211 12234 58999974 556677777
Q ss_pred HhhCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH--HHHhhcCceEEEEeCCcccCCh--hhHHH
Q 003311 184 STWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNH--ECALA 257 (832)
Q Consensus 184 ~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~--~~L~~~~w~~vIiDEaHriKN~--~sk~~ 257 (832)
.+|.- ++.++...|....-.+- +.-...++++|.|+..+.... .+|..-...|||+|||.++-.. .-...
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~----fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~ 418 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQG----FQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQ 418 (673)
T ss_pred HHhcccccceEEEEecccchhhhh----hhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHH
Confidence 77752 35666655544322211 111157889999999887653 3455557889999999998542 23344
Q ss_pred HHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 003311 258 KTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337 (832)
Q Consensus 258 kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfl 337 (832)
+.|..+ |..|.- | ..+.+..| .++ ...|.
T Consensus 419 ~iL~~m-----------Pssn~k-----------~----~tde~~~~----------------------~~~---~~~~~ 447 (673)
T KOG0333|consen 419 KILEQM-----------PSSNAK-----------P----DTDEKEGE----------------------ERV---RKNFS 447 (673)
T ss_pred HHHHhC-----------CccccC-----------C----CccchhhH----------------------HHH---Hhhcc
Confidence 444333 222210 0 00000000 000 00000
Q ss_pred hhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhH
Q 003311 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKE 417 (832)
Q Consensus 338 lRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~ 417 (832)
- .| --..-......|++.-..+-..++...........++. +|.+-. .-
T Consensus 448 ~--~k-------~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~---------------~~rveQ-------~v 496 (673)
T KOG0333|consen 448 S--SK-------KYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKP---------------TPRVEQ-------KV 496 (673)
T ss_pred c--cc-------ceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCC---------------ccchhe-------EE
Confidence 0 00 01122233444554444443333322211111111110 010000 00
Q ss_pred HHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 418 EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 418 ~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
..+..+.|+..|.++|... ...++|||.+....+|.|++.|...||+++.|||+-++++|+.+|..|+++..+ +|
T Consensus 497 ~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d---Il 571 (673)
T KOG0333|consen 497 EMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD---IL 571 (673)
T ss_pred EEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC---EE
Confidence 1124566788888888876 456899999999999999999999999999999999999999999999998877 79
Q ss_pred EeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 498 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 498 lSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
++|+++|.||+++.+++||.||..-+...|.+||||.+|.|+.-. +..|+|..
T Consensus 572 VaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gt--aiSflt~~ 624 (673)
T KOG0333|consen 572 VATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGT--AISFLTPA 624 (673)
T ss_pred EEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCce--eEEEeccc
Confidence 999999999999999999999999999999999999999997654 44556554
No 62
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=6.6e-20 Score=200.19 Aligned_cols=354 Identities=18% Similarity=0.219 Sum_probs=217.5
Q ss_pred CCchHHHHHHHHHHHHhhcc-----CCCeEEEcCCCCcHHHHHHHHHHHHHHhc-CCCCCEEEEeCC-CchHHHHHHHHh
Q 003311 113 GELRAYQLEGLQWMLSLFNN-----NLNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPK-AVLPNWINEFST 185 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~-----~~~gILaDemGlGKTiqaiali~~l~~~~-~~~~p~LIV~P~-sll~qW~~E~~k 185 (832)
..+.|.|...+-|++.-.+. .+...++.++|+|||+....-|..++..+ -.+-+.|||+|. .+..|-.+.|.+
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 48999999999999875442 33457899999999998544444444433 344578999996 567889999999
Q ss_pred hCCC--ceEEEEcCChhHHHHHHHHHHh-hcCCccEEecCHHHHHHhHHHHhh---cCceEEEEeCCcccCChh--hHHH
Q 003311 186 WAPS--IAAVVYDGRPDERKAMREEFFS-ERGRFNVLITHYDLIMRDRQYLKK---VQWIYMIVDEGHRLKNHE--CALA 257 (832)
Q Consensus 186 ~~p~--~~v~~~~g~~~~r~~~~~~~~~-~~~~~dVvItTye~l~~d~~~L~~---~~w~~vIiDEaHriKN~~--sk~~ 257 (832)
|++. +.|+...|....+....+..-. .....||+|+|++.+..+...-.. -+..|+|||||.|+.+.. ..+-
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~ 317 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLD 317 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHH
Confidence 9874 6677777876655554433221 124569999999999887653222 256789999999997633 2233
Q ss_pred HHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 003311 258 KTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337 (832)
Q Consensus 258 kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfl 337 (832)
..+.......++.+.+ .++.+..-..|..+.... .-+..+ ...|.+++.+-.
T Consensus 318 ~v~~~~~~~k~~~~~~--------nii~~~~~~~pt~~~e~~---t~~~~~-----------------~~~l~kL~~sat 369 (620)
T KOG0350|consen 318 TVMSLCKTMKRVACLD--------NIIRQRQAPQPTVLSELL---TKLGKL-----------------YPPLWKLVFSAT 369 (620)
T ss_pred HHHHHhCCchhhcChh--------hhhhhcccCCchhhHHHH---hhcCCc-----------------CchhHhhhcchh
Confidence 3333333332222221 121111111111111000 000000 011222222222
Q ss_pred hhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccc---cch
Q 003311 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY---NMW 414 (832)
Q Consensus 338 lRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~---~~~ 414 (832)
|.+...-+.. | -.+||-++.-.. ..+
T Consensus 370 LsqdP~Kl~~-l--------------------------------------------------~l~~Prl~~v~~~~~~ry 398 (620)
T KOG0350|consen 370 LSQDPSKLKD-L--------------------------------------------------TLHIPRLFHVSKPLIGRY 398 (620)
T ss_pred hhcChHHHhh-h--------------------------------------------------hcCCCceEEeecccceee
Confidence 2222111110 0 011221111100 000
Q ss_pred h-----hHHHHhhc--chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHH
Q 003311 415 R-----KEEIIRAS--GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLL 483 (832)
Q Consensus 415 ~-----~~~l~~~S--~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i 483 (832)
. ....+..+ -|-..+..++.. ....++|+|+...+....+...|+ ...+++-.++|+.+.+.|.+++
T Consensus 399 slp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l 476 (620)
T KOG0350|consen 399 SLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKML 476 (620)
T ss_pred ecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHH
Confidence 0 00000111 133344444444 356799999999887777776665 4567777899999999999999
Q ss_pred HhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 484 ~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
.+|+.++.. +||+++++.+|+|+...+.||.||+|-.-..|++|+||..|.||.- ++|.++...
T Consensus 477 ~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~ 540 (620)
T KOG0350|consen 477 EKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH 540 (620)
T ss_pred HHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeeccc
Confidence 999999876 7999999999999999999999999999999999999999999865 556666544
No 63
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.83 E-value=5.1e-19 Score=210.92 Aligned_cols=106 Identities=24% Similarity=0.352 Sum_probs=88.0
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHH-----HHHHhhcC----CC----CCceEEEEeccccc
Q 003311 438 KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERG-----TLLKQFNA----PD----SPYFMFLLSTRAGG 504 (832)
Q Consensus 438 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~-----~~i~~Fn~----~~----~~~~v~LlSt~agg 504 (832)
..+.++||||+....++.|...|...++ ..+||.+++.+|. .++++|.. +. .+-..+||+|.+++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4578999999999999999999998887 8999999999999 78999976 22 01135799999999
Q ss_pred cccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCc--EEEEEE
Q 003311 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE--VRVFVL 548 (832)
Q Consensus 505 ~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~--V~V~rL 548 (832)
.|||+.. ++||++..| +..|+||+||++|.|.... +.|+.+
T Consensus 348 rGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999975 999987766 4789999999999998644 444433
No 64
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.83 E-value=7.5e-19 Score=208.42 Aligned_cols=331 Identities=20% Similarity=0.170 Sum_probs=219.3
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHH-HHHHHHhc-CCC---CCEEEEeCCCchH-HHHHHHHhh
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLENK-GVT---GPHVIVAPKAVLP-NWINEFSTW 186 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaial-i~~l~~~~-~~~---~p~LIV~P~sll~-qW~~E~~k~ 186 (832)
.+|+|.|..++.-+.. |.|.++..+||+|||..|+.. +..+.... +.. -.+|.|.|+--|. .-.+.+..|
T Consensus 21 ~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 5899999999987765 999999999999999998644 45555542 111 2479999975444 355555555
Q ss_pred C--CCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh------HHHHhhcCceEEEEeCCcccCC--hhhHH
Q 003311 187 A--PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD------RQYLKKVQWIYMIVDEGHRLKN--HECAL 256 (832)
Q Consensus 187 ~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d------~~~L~~~~w~~vIiDEaHriKN--~~sk~ 256 (832)
. -++.+-+-+|........+. ....+||+|||+|++.-- ...|.. ..+|||||.|-+.+ .++.+
T Consensus 97 ~~~~G~~v~vRhGDT~~~er~r~----~~~PPdILiTTPEsL~lll~~~~~r~~l~~--vr~VIVDEiHel~~sKRG~~L 170 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEKQKM----LKNPPHILITTPESLAILLNSPKFRELLRD--VRYVIVDEIHALAESKRGVQL 170 (814)
T ss_pred HHHcCCccceecCCCChHHhhhc----cCCCCcEEEeChhHHHHHhcCHHHHHHhcC--CcEEEeehhhhhhccccchhh
Confidence 3 25566677775443222111 126899999999998532 344554 45699999999975 45677
Q ss_pred HHHHHcc---c-cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhh
Q 003311 257 AKTISGY---Q-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332 (832)
Q Consensus 257 ~kal~~l---~-~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~ 332 (832)
+-.+.++ . .-.|++||||- .++.++ ..||.+.-. +.
T Consensus 171 sl~LeRL~~l~~~~qRIGLSATV--~~~~~v---arfL~g~~~------------~~----------------------- 210 (814)
T COG1201 171 ALSLERLRELAGDFQRIGLSATV--GPPEEV---AKFLVGFGD------------PC----------------------- 210 (814)
T ss_pred hhhHHHHHhhCcccEEEeehhcc--CCHHHH---HHHhcCCCC------------ce-----------------------
Confidence 7776555 2 46789999994 233333 333322100 00
Q ss_pred hhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCcccccccc
Q 003311 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN 412 (832)
Q Consensus 333 L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~ 412 (832)
..|......+.++.+.++-.....
T Consensus 211 ----------~Iv~~~~~k~~~i~v~~p~~~~~~---------------------------------------------- 234 (814)
T COG1201 211 ----------EIVDVSAAKKLEIKVISPVEDLIY---------------------------------------------- 234 (814)
T ss_pred ----------EEEEcccCCcceEEEEecCCcccc----------------------------------------------
Confidence 000001111122222211000000
Q ss_pred chhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCC-CeEEEEcCCCCHHHHHHHHHhhcCCCC
Q 003311 413 MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLND-FKFLRLDGSTKTEERGTLLKQFNAPDS 491 (832)
Q Consensus 413 ~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g-~~~~rldG~ts~~eR~~~i~~Fn~~~~ 491 (832)
...-...+.+.+.++.++...+|||++...+.+.+...|...+ ..+...|||.+.+.|..+-++|+++.-
T Consensus 235 ---------~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~l 305 (814)
T COG1201 235 ---------DEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGEL 305 (814)
T ss_pred ---------ccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCc
Confidence 0001122333344444556689999999999999999998876 899999999999999999999999886
Q ss_pred CceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhc-cccCCcCcEEEEEEEeCCCHHHHHHHHHHHH
Q 003311 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRA-HRIGQKKEVRVFVLVSVGSIEEVILERAKQK 565 (832)
Q Consensus 492 ~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRa-hRiGQ~k~V~V~rLit~~siEe~Il~~~~~K 565 (832)
. .++||....+|||+-.+|.||+|.+|-.-...+||+||+ ||+|... -..+++.+ .++.+-.++.-+
T Consensus 306 r---avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~S---kg~ii~~~-r~dllE~~vi~~ 373 (814)
T COG1201 306 K---AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVS---KGIIIAED-RDDLLECLVLAD 373 (814)
T ss_pred e---EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcc---cEEEEecC-HHHHHHHHHHHH
Confidence 5 689999999999999999999999999999999999998 5666433 34455555 555554444333
No 65
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=3.7e-19 Score=197.69 Aligned_cols=314 Identities=20% Similarity=0.259 Sum_probs=211.8
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHH-HHHHHHHHhcC---------CCCCEEEEeCC-CchHHHH
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENKG---------VTGPHVIVAPK-AVLPNWI 180 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqai-ali~~l~~~~~---------~~~p~LIV~P~-sll~qW~ 180 (832)
...+.|+|+.++.-+.. +++.+.|..+|+|||..-+ -++.+++.... .....||++|+ .|+.|-.
T Consensus 94 ~~~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ 169 (482)
T KOG0335|consen 94 YTKPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIY 169 (482)
T ss_pred ccCCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHH
Confidence 45889999999975554 8888899999999999875 55566666532 23457999997 6889999
Q ss_pred HHHHhhCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH--HHhhcCceEEEEeCCcccCCh---h
Q 003311 181 NEFSTWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNH---E 253 (832)
Q Consensus 181 ~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~--~L~~~~w~~vIiDEaHriKN~---~ 253 (832)
+|..++.. .+..++.+|..+.+...+.. ...+|++++|...+..-.. .+..-...++|+|||.+|-.. .
T Consensus 170 nea~k~~~~s~~~~~~~ygg~~~~~q~~~~----~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~ 245 (482)
T KOG0335|consen 170 NEARKFSYLSGMKSVVVYGGTDLGAQLRFI----KRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFE 245 (482)
T ss_pred HHHHhhcccccceeeeeeCCcchhhhhhhh----ccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhcccc
Confidence 99999864 34444444444444443332 2789999999998865422 222224459999999998541 2
Q ss_pred hHHHHHHHcc-----ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHH
Q 003311 254 CALAKTISGY-----QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRR 328 (832)
Q Consensus 254 sk~~kal~~l-----~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~ 328 (832)
-.+.+.+... .....++.|||= .-.+..
T Consensus 246 p~Ir~iv~~~~~~~~~~~qt~mFSAtf-p~~iq~---------------------------------------------- 278 (482)
T KOG0335|consen 246 PQIRKIVEQLGMPPKNNRQTLLFSATF-PKEIQR---------------------------------------------- 278 (482)
T ss_pred ccHHHHhcccCCCCccceeEEEEeccC-Chhhhh----------------------------------------------
Confidence 2333333222 122335555551 000110
Q ss_pred HHhhhhhhhhh----hhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCC
Q 003311 329 LHHVIRPFILR----RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHP 404 (832)
Q Consensus 329 L~~~L~pfllR----R~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP 404 (832)
+..+|+.- -....|..........+++|.
T Consensus 279 ---l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~-------------------------------------------- 311 (482)
T KOG0335|consen 279 ---LAADFLKDNYIFLAVGRVGSTSENITQKILFVN-------------------------------------------- 311 (482)
T ss_pred ---hHHHHhhccceEEEEeeeccccccceeEeeeec--------------------------------------------
Confidence 11111100 000011111222222233332
Q ss_pred ccccccccchhhHHHHhhcchHHHHHHHHHhhhh-------cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHH
Q 003311 405 YLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRK-------SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTE 477 (832)
Q Consensus 405 ~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~-------~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~ 477 (832)
...|...|.++|..... ..++++||+...+.++.++.+|...++++..+||.-++.
T Consensus 312 -----------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~ 374 (482)
T KOG0335|consen 312 -----------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQI 374 (482)
T ss_pred -----------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhh
Confidence 12233344444443321 125899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEE
Q 003311 478 ERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 547 (832)
Q Consensus 478 eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~r 547 (832)
+|.+.++.|..+..+ +||+|..+.+|||++.+.+||+||.|-+-..|++|+||++|-|+.--...|.
T Consensus 375 er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 375 EREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred HHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEe
Confidence 999999999998887 7999999999999999999999999999999999999999999876644443
No 66
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=3.1e-19 Score=188.09 Aligned_cols=330 Identities=19% Similarity=0.231 Sum_probs=224.1
Q ss_pred CCCcCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHH
Q 003311 106 QPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFS 184 (832)
Q Consensus 106 ~P~~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~ 184 (832)
|...+.-.++.|.|..++-.++. |.++|-|.-+|+|||.....-+..-+...+..--.||++|. .+..|-.+.|.
T Consensus 21 ~l~~l~i~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~ 96 (442)
T KOG0340|consen 21 QLKALGIKKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFI 96 (442)
T ss_pred HHHHhcCCCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHH
Confidence 33333335788999999998887 99999999999999986433333333333444467999997 56677777776
Q ss_pred hhC--CCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH------HHhhcCceEEEEeCCcccCChh--h
Q 003311 185 TWA--PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ------YLKKVQWIYMIVDEGHRLKNHE--C 254 (832)
Q Consensus 185 k~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~------~L~~~~w~~vIiDEaHriKN~~--s 254 (832)
... -++++.++.|..+.-.... .+. .+++|||+|++.+..... ...-.+..++|+|||.++.+.. -
T Consensus 97 alGk~l~lK~~vivGG~d~i~qa~--~L~--~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d 172 (442)
T KOG0340|consen 97 ALGKLLNLKVSVIVGGTDMIMQAA--ILS--DRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPD 172 (442)
T ss_pred HhcccccceEEEEEccHHHhhhhh--hcc--cCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhh
Confidence 554 2577778877765433222 222 678999999998754321 1122245689999999997642 2
Q ss_pred HHHHHHHccccc-eEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhh
Q 003311 255 ALAKTISGYQIQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVI 333 (832)
Q Consensus 255 k~~kal~~l~~~-~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L 333 (832)
.+.-....++.. ..+++|||- .+++.+++ ..|....
T Consensus 173 ~L~~i~e~lP~~RQtLlfSATi-td~i~ql~---------------------~~~i~k~--------------------- 209 (442)
T KOG0340|consen 173 ILEGIEECLPKPRQTLLFSATI-TDTIKQLF---------------------GCPITKS--------------------- 209 (442)
T ss_pred HHhhhhccCCCccceEEEEeeh-hhHHHHhh---------------------cCCcccc---------------------
Confidence 333333445444 679999994 23333221 1111100
Q ss_pred hhhhhhhhHhHHhhcCCCCeEEEEEc-CCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCcccccccc
Q 003311 334 RPFILRRKKDEVEKYLPGKSQVILKC-DMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN 412 (832)
Q Consensus 334 ~pfllRR~k~dv~~~LP~k~e~~v~~-~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~ 412 (832)
..+.+.. +-.+.-..+|+. |++
T Consensus 210 -------------------~a~~~e~~~~vstvetL~q~---------------------------------yI~----- 232 (442)
T KOG0340|consen 210 -------------------IAFELEVIDGVSTVETLYQG---------------------------------YIL----- 232 (442)
T ss_pred -------------------cceEEeccCCCCchhhhhhh---------------------------------eee-----
Confidence 0000000 000000011111 011
Q ss_pred chhhHHHHhhcchHHHHHHHHHhhhh-cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCC
Q 003311 413 MWRKEEIIRASGKFELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491 (832)
Q Consensus 413 ~~~~~~l~~~S~Kl~~L~~lL~~l~~-~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~ 491 (832)
+....|-.+|..+|..... ....++||.|.+..+.+|...|+..++.+..+|+.+++.+|..++.+|+++..
T Consensus 233 -------~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~ 305 (442)
T KOG0340|consen 233 -------VSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAA 305 (442)
T ss_pred -------cchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCc
Confidence 1233466677777877765 56789999999999999999999999999999999999999999999999776
Q ss_pred CceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHH
Q 003311 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 555 (832)
Q Consensus 492 ~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siE 555 (832)
. +|++|+++++|||+++++.||.||.|-.|..|++|.||..|.|..-. .+-++++..+|
T Consensus 306 ~---iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~--aiSivt~rDv~ 364 (442)
T KOG0340|consen 306 R---ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM--AISIVTQRDVE 364 (442)
T ss_pred c---EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc--eEEEechhhHH
Confidence 6 79999999999999999999999999999999999999999886654 33455555544
No 67
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.82 E-value=5.5e-19 Score=193.34 Aligned_cols=330 Identities=21% Similarity=0.284 Sum_probs=218.4
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHH-Hhc---CCCCCEEEEeCCC-chHHHHHH---HH
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL-ENK---GVTGPHVIVAPKA-VLPNWINE---FS 184 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~-~~~---~~~~p~LIV~P~s-ll~qW~~E---~~ 184 (832)
.++.+.|...+.-++. +...+.+.-+|+|||+..+.-+..+. ..+ ...-.+|||||.- +..|-..| +-
T Consensus 103 ~~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll 178 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELL 178 (543)
T ss_pred cchhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHH
Confidence 3788888888876665 77889999999999998754443333 222 2222469999974 45555444 55
Q ss_pred hhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhc---CceEEEEeCCcccCC--hhhHHHHH
Q 003311 185 TWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKV---QWIYMIVDEGHRLKN--HECALAKT 259 (832)
Q Consensus 185 k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~---~w~~vIiDEaHriKN--~~sk~~ka 259 (832)
++.++..+.+..|....+....... ...+++|.|++.+..+...-..+ .-+++|+|||.|+.. ..--+-+.
T Consensus 179 ~~h~~~~v~~viGG~~~~~e~~kl~----k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~I 254 (543)
T KOG0342|consen 179 KYHESITVGIVIGGNNFSVEADKLV----KGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQI 254 (543)
T ss_pred hhCCCcceEEEeCCccchHHHHHhh----ccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHH
Confidence 5666777766666554443322211 47899999999998765432221 236899999999954 33445556
Q ss_pred HHccc-cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhh
Q 003311 260 ISGYQ-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338 (832)
Q Consensus 260 l~~l~-~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfll 338 (832)
+..++ ....++.|||-- ..+.++.. + .|
T Consensus 255 i~~lpk~rqt~LFSAT~~-~kV~~l~~----------------------------------------------~----~L 283 (543)
T KOG0342|consen 255 IKILPKQRQTLLFSATQP-SKVKDLAR----------------------------------------------G----AL 283 (543)
T ss_pred HHhccccceeeEeeCCCc-HHHHHHHH----------------------------------------------H----hh
Confidence 66554 344588888831 11111110 0 00
Q ss_pred hhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHH
Q 003311 339 RRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEE 418 (832)
Q Consensus 339 RR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~ 418 (832)
.| ....+.|. +.+...+ ..++.+- |+
T Consensus 284 ~~------------d~~~v~~~--------------------d~~~~~T------he~l~Qg----yv------------ 309 (543)
T KOG0342|consen 284 KR------------DPVFVNVD--------------------DGGERET------HERLEQG----YV------------ 309 (543)
T ss_pred cC------------CceEeecC--------------------CCCCcch------hhcccce----EE------------
Confidence 00 00011110 0000000 0011110 00
Q ss_pred HHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 003311 419 IIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 498 (832)
Q Consensus 419 l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~Ll 498 (832)
+.....++.+|..+|++.... .|++|||....+...+...|.+..+++..|||..++..|..+..+|....+. +|+
T Consensus 310 v~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg---IL~ 385 (543)
T KOG0342|consen 310 VAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG---ILV 385 (543)
T ss_pred eccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc---eEE
Confidence 011234567788888876554 8999999999999999999999999999999999999999999999998776 899
Q ss_pred eccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 003311 499 STRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563 (832)
Q Consensus 499 St~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~ 563 (832)
+|+++++|+|++.++.||-||+|-+|.+|++|+||.+|-| +.-.-+-|+++. |...+.-++
T Consensus 386 cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~g--k~G~alL~l~p~--El~Flr~LK 446 (543)
T KOG0342|consen 386 CTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREG--KEGKALLLLAPW--ELGFLRYLK 446 (543)
T ss_pred ecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccC--CCceEEEEeChh--HHHHHHHHh
Confidence 9999999999999999999999999999999999999966 444455555543 555555444
No 68
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.82 E-value=7e-18 Score=199.38 Aligned_cols=388 Identities=16% Similarity=0.182 Sum_probs=219.3
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCC-chHHHHHHHHhhCC--Cc
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA-VLPNWINEFSTWAP--SI 190 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p--~~ 190 (832)
.++|||.+.+..++. +.++|....||.|||++++..+. +.... ...++||+|.. |..+|.+++..++. ++
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~-l~aL~--g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLY-LNALT--GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHH-HHhhc--CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 467777777766654 45579999999999999865532 22211 23589999975 66777766654431 44
Q ss_pred eEEE-EcCChh--HHHHHHHHHHhhcCCccEEecCHHHHHHhH--HH-------HhhcCceEEEEeCCcccCChhhHHHH
Q 003311 191 AAVV-YDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRDR--QY-------LKKVQWIYMIVDEGHRLKNHECALAK 258 (832)
Q Consensus 191 ~v~~-~~g~~~--~r~~~~~~~~~~~~~~dVvItTye~l~~d~--~~-------L~~~~w~~vIiDEaHriKN~~sk~~k 258 (832)
.+.+ +.++.. .....+... ..++|+++|...+..+. .. +....+.++||||||.|--..
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~----y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe----- 211 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKI----YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS----- 211 (762)
T ss_pred cEEEEECCCCccccCHHHHHHh----CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc-----
Confidence 4444 333111 111111111 46899999999884321 11 112367799999999874322
Q ss_pred HHHccccceEEEeeccCCCCCHHHHHHHHhcc----CCCC-CC----------C---hHHHHHHhcccccccCcccCChH
Q 003311 259 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFL----LPTI-FN----------S---VENFEEWFNAPFKDRGQVALTDE 320 (832)
Q Consensus 259 al~~l~~~~rllLTGTPlqN~l~EL~sLl~fL----~p~~-f~----------~---~~~F~~~f~~~~~~~~~~~~~~e 320 (832)
+...+++||.|-.. ..+|..++-+ .++. |. + ...-.+.|..+ .+...
T Consensus 212 ------artpliisg~~~~~--~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~-------~l~~~ 276 (762)
T TIGR03714 212 ------AQTPLVISGAPRVQ--SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID-------NLYSE 276 (762)
T ss_pred ------CcCCeeeeCCCccc--hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC-------ccCCh
Confidence 33458899977533 3466555332 2221 00 0 00001111100 01111
Q ss_pred HHHHHHHHHHhhhhhh-hhhhhHhHHhhcCCCCeEEEEEcCCC-------HHHHHHHHHHHHhcccccccCCC--cchhH
Q 003311 321 EQLLIIRRLHHVIRPF-ILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGLDTGTG--KSKSL 390 (832)
Q Consensus 321 e~~~~~~~L~~~L~pf-llRR~k~dv~~~LP~k~e~~v~~~ms-------~~Q~~lY~~i~~~~~~~~~~~~~--~~~~l 390 (832)
+.......+...|+-. ++.|-+. --+.+....+|- +.| .++.-+-+.+..+....+..... ..-.+
T Consensus 277 ~~~~~~~~i~~al~A~~~~~~d~d---YiV~~~~v~ivD-~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~ 352 (762)
T TIGR03714 277 EYFELVRHINLALRAHYLFKRNKD---YVVTNGEVVLLD-RITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITY 352 (762)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCc---eEEECCEEEEEE-CCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeH
Confidence 1111222222222221 2221111 001111111111 111 13333334443332222211110 01122
Q ss_pred HHHH-----------------HHHHHhhCCCccccccccchhhH-----HHHhhcchHHHHHHHHHhhhhcCCeEEEEec
Q 003311 391 QNLS-----------------MQLRKCCNHPYLFVGEYNMWRKE-----EIIRASGKFELLDRLLPKLRKSGHRVLLFSQ 448 (832)
Q Consensus 391 ~~~~-----------------~~LRk~cnhP~l~~~~~~~~~~~-----~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq 448 (832)
+|++ ..+.++.+-+.+..+...+.... -......|+.++.+.+..+...+.+|||||.
T Consensus 353 qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~ 432 (762)
T TIGR03714 353 QNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITG 432 (762)
T ss_pred HHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 2222 23444444443333221111100 0123456899999999988889999999999
Q ss_pred chhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcc---------cCCeEEEeC
Q 003311 449 MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ---------TADTVIIFD 519 (832)
Q Consensus 449 ~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~---------~ad~VI~~D 519 (832)
.....+.+...|...|+++..++|.+...+|..+...|+.+ -++++|..+|+|+|++ ..++||.|+
T Consensus 433 s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g-----~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~ 507 (762)
T TIGR03714 433 SVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG-----AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTER 507 (762)
T ss_pred cHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC-----eEEEEccccccccCCCCCccccccCCeEEEEecC
Confidence 99999999999999999999999999988887777766654 2799999999999999 789999999
Q ss_pred CCCChhhHHHHhhhccccCCcCc
Q 003311 520 SDWNPQMDQQAEDRAHRIGQKKE 542 (832)
Q Consensus 520 ~~wNp~~~~QAigRahRiGQ~k~ 542 (832)
++-+... .|+.||++|.|..-.
T Consensus 508 ~ps~rid-~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 508 MENSRVD-LQLRGRSGRQGDPGS 529 (762)
T ss_pred CCCcHHH-HHhhhcccCCCCcee
Confidence 9977654 999999999886654
No 69
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=2.2e-18 Score=187.40 Aligned_cols=316 Identities=20% Similarity=0.290 Sum_probs=217.5
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCC---CC--CEEEEeCCCc-hHH---HHHHH
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV---TG--PHVIVAPKAV-LPN---WINEF 183 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~---~~--p~LIV~P~sl-l~q---W~~E~ 183 (832)
....|-|..++-.++. +...++-..||+|||+..+.-+...+..... ++ ..|||+|+-- ..| -...|
T Consensus 27 ~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 4788999999987776 8888899999999999987776665532211 22 3599999743 333 34456
Q ss_pred HhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh----HHHHhhcCceEEEEeCCcccCC--hhhHHH
Q 003311 184 STWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD----RQYLKKVQWIYMIVDEGHRLKN--HECALA 257 (832)
Q Consensus 184 ~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d----~~~L~~~~w~~vIiDEaHriKN--~~sk~~ 257 (832)
-.++|++++.++.|+..-...+. .+.. ..++|+|.|++.+..- ...+.-....++|+|||.|+-. ....+.
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~-~fke--e~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n 179 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIK-TFKE--EGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVN 179 (567)
T ss_pred HHhhhccceEEEecCccHHHHHH-HHHH--hCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHH
Confidence 66678999999998855444432 2222 5788999999876543 3335544577999999999965 445677
Q ss_pred HHHHccccceEE-EeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhh
Q 003311 258 KTISGYQIQRRL-LLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF 336 (832)
Q Consensus 258 kal~~l~~~~rl-lLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pf 336 (832)
..+..++.++|- +.|||-.+ ...+| .. +
T Consensus 180 ~ILs~LPKQRRTGLFSATq~~-~v~dL---~r-----------------------------------------------a 208 (567)
T KOG0345|consen 180 TILSFLPKQRRTGLFSATQTQ-EVEDL---AR-----------------------------------------------A 208 (567)
T ss_pred HHHHhcccccccccccchhhH-HHHHH---HH-----------------------------------------------h
Confidence 777888777775 45777321 11111 00 0
Q ss_pred hhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhh
Q 003311 337 ILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK 416 (832)
Q Consensus 337 llRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~ 416 (832)
-|| ....+.+...- .......+.+. |+
T Consensus 209 GLR-----------Npv~V~V~~k~---------------------~~~tPS~L~~~-----------Y~---------- 235 (567)
T KOG0345|consen 209 GLR-----------NPVRVSVKEKS---------------------KSATPSSLALE-----------YL---------- 235 (567)
T ss_pred hcc-----------Cceeeeecccc---------------------cccCchhhcce-----------ee----------
Confidence 000 00111110000 00000000000 00
Q ss_pred HHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHh--CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCce
Q 003311 417 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL--NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494 (832)
Q Consensus 417 ~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~--~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~ 494 (832)
.+.+..|+..|.++|.. ...+|+|||.......++....|.. ....++.+||.++...|..++..|....+.
T Consensus 236 --v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~-- 309 (567)
T KOG0345|consen 236 --VCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG-- 309 (567)
T ss_pred --EecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc--
Confidence 01234577888888876 4567999999999999988888754 478999999999999999999999984444
Q ss_pred EEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEE
Q 003311 495 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 495 v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
+|++|+++++|||++..|.||.||||-+|..+.+|.||+.|.|..-...||
T Consensus 310 -vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 310 -VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred -eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 799999999999999999999999999999999999999999976654443
No 70
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.81 E-value=2.1e-18 Score=216.35 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=85.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCC---------------------------------CeEEEEcCCCCHHHHHHHHHh
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLND---------------------------------FKFLRLDGSTKTEERGTLLKQ 485 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g---------------------------------~~~~rldG~ts~~eR~~~i~~ 485 (832)
.++++||||+....++.+...|.... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999998886431 124578899999999999999
Q ss_pred hcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhcccc
Q 003311 486 FNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI 537 (832)
Q Consensus 486 Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRi 537 (832)
|+++... +|++|.++..|||+..+|.||+|++|.+...++|++||++|.
T Consensus 323 fK~G~Lr---vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR---CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce---EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9998765 799999999999999999999999999999999999999985
No 71
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.81 E-value=5.3e-19 Score=204.48 Aligned_cols=347 Identities=17% Similarity=0.216 Sum_probs=220.8
Q ss_pred CCCCchHHHHHHHHHHHHhhccCCC-eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC-CCchHHHHHHHHhhCC
Q 003311 111 QGGELRAYQLEGLQWMLSLFNNNLN-GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KAVLPNWINEFSTWAP 188 (832)
Q Consensus 111 ~~~~Lr~yQ~egl~wml~~~~~~~~-gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p 188 (832)
....+|+||..+++.+...+.++.+ .+|++.+|+|||.+||++|..|+..+. .+++|+++- .+++.|-..+|..+.|
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~-~KRVLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGW-VKRVLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcch-hheeeEEechHHHHHHHHHHHHHhCC
Confidence 3468999999999999998766554 688999999999999999999988654 458999999 5889999999999999
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH-------HhhcCceEEEEeCCcccCChhhHHHHHHH
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY-------LKKVQWIYMIVDEGHRLKNHECALAKTIS 261 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~-------L~~~~w~~vIiDEaHriKN~~sk~~kal~ 261 (832)
...++........ ...+.|+|.||+++...... +..-.||+||||||||-- - +..+.+.
T Consensus 241 ~~~~~n~i~~~~~-----------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi--~-~~~~~I~ 306 (875)
T COG4096 241 FGTKMNKIEDKKG-----------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI--Y-SEWSSIL 306 (875)
T ss_pred CccceeeeecccC-----------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH--H-hhhHHHH
Confidence 7655443322111 03578999999999875332 333469999999999842 2 2233454
Q ss_pred ccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhh
Q 003311 262 GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 341 (832)
Q Consensus 262 ~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~ 341 (832)
.|-...+++|||||-..--..-+.+++ +.|... .-+
T Consensus 307 dYFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~---------------------------Ysl 342 (875)
T COG4096 307 DYFDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYA---------------------------YSL 342 (875)
T ss_pred HHHHHHHHhhccCcccccccccccccC-----------------CCccee---------------------------ecH
Confidence 445567777899996532222222221 122111 111
Q ss_pred HhHHhh-c-CCCCe-EEEEEcCCCH-------HHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccc
Q 003311 342 KDEVEK-Y-LPGKS-QVILKCDMSA-------WQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY 411 (832)
Q Consensus 342 k~dv~~-~-LP~k~-e~~v~~~ms~-------~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~ 411 (832)
+.-|.+ . .|++. .+.+.++..- .+.+.+...... + ++ .+
T Consensus 343 eeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~-----d--------------------d~------~~ 391 (875)
T COG4096 343 EEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDE-----D--------------------DQ------NF 391 (875)
T ss_pred HHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCc-----c--------------------cc------cc
Confidence 112211 1 22221 1222221110 011111000000 0 00 00
Q ss_pred cchhhHHHHhhcchHHHHHHHHHhhhhc---C---CeEEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHH
Q 003311 412 NMWRKEEIIRASGKFELLDRLLPKLRKS---G---HRVLLFSQMTRLMDILEIYLKLN-----DFKFLRLDGSTKTEERG 480 (832)
Q Consensus 412 ~~~~~~~l~~~S~Kl~~L~~lL~~l~~~---g---~kvLIFsq~~~~ldiL~~~L~~~-----g~~~~rldG~ts~~eR~ 480 (832)
.....+..+......+.+.+.+..+... | .|+||||....+++.|...|... |-=++.|+|.... -+
T Consensus 392 ~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~--~q 469 (875)
T COG4096 392 EARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ--AQ 469 (875)
T ss_pred cccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh--hH
Confidence 0000001111222334455555544433 3 48999999999999999988643 3346678887664 45
Q ss_pred HHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccC-------CcCc-EEEEEEEe
Q 003311 481 TLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIG-------QKKE-VRVFVLVS 550 (832)
Q Consensus 481 ~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiG-------Q~k~-V~V~rLit 550 (832)
..|+.|-. ..++..+.+|.+.+.+|+|.+.|-.+|++-.-.+-..+.|.+||+-|+. |.|. ..|+.++-
T Consensus 470 ~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~ 546 (875)
T COG4096 470 ALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVD 546 (875)
T ss_pred HHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhhh
Confidence 67888876 3445568999999999999999999999999999999999999999973 4455 88888874
No 72
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.80 E-value=1.5e-19 Score=199.03 Aligned_cols=387 Identities=19% Similarity=0.232 Sum_probs=237.4
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHH-HHHHHHHHHhc------------CCCCCEEEEeCC-CchHHH
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT-IALIAYLLENK------------GVTGPHVIVAPK-AVLPNW 179 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqa-iali~~l~~~~------------~~~~p~LIV~P~-sll~qW 179 (832)
.+.|.|...+--++. .....+-|.|+|+|||+.. |-++..+.+.. +...-.|||+|. -|..|-
T Consensus 203 ~Pt~IQsl~lp~ai~---gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV 279 (731)
T KOG0347|consen 203 RPTEIQSLVLPAAIR---GKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQV 279 (731)
T ss_pred CCccchhhcccHhhc---cchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHH
Confidence 566666666655553 1244566899999999974 55555333221 111126999997 567777
Q ss_pred HHHHHhhC--CCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh----HHHHhhc-CceEEEEeCCccc--C
Q 003311 180 INEFSTWA--PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD----RQYLKKV-QWIYMIVDEGHRL--K 250 (832)
Q Consensus 180 ~~E~~k~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d----~~~L~~~-~w~~vIiDEaHri--K 250 (832)
...|...+ +.+.+..+.|.-...++.+ +.+ ..++|||.|++.+..- ..++..+ +..++||||+.|| +
T Consensus 280 ~~Hl~ai~~~t~i~v~si~GGLavqKQqR--lL~--~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvek 355 (731)
T KOG0347|consen 280 KQHLKAIAEKTQIRVASITGGLAVQKQQR--LLN--QRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEK 355 (731)
T ss_pred HHHHHHhccccCeEEEEeechhHHHHHHH--HHh--cCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhh
Confidence 77777765 5688888888766544332 333 4789999998876432 2234443 4679999999999 4
Q ss_pred ChhhHHHHHHHccc------cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHH
Q 003311 251 NHECALAKTISGYQ------IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLL 324 (832)
Q Consensus 251 N~~sk~~kal~~l~------~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~ 324 (832)
.+-.-+++.+..+. -...++.|||--- ..+. |..........+.....
T Consensus 356 ghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~---------~~~~-----------------~~~~~~k~~~k~~~~~~ 409 (731)
T KOG0347|consen 356 GHFEELSKLLKHLNEEQKNRQRQTLVFSATLTL---------VLQQ-----------------PLSSSRKKKDKEDELNA 409 (731)
T ss_pred ccHHHHHHHHHHhhhhhcccccceEEEEEEeeh---------hhcC-----------------hhHHhhhccchhhhhhH
Confidence 44455666665553 2234888888421 0000 00000000000111111
Q ss_pred HHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCC
Q 003311 325 IIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHP 404 (832)
Q Consensus 325 ~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP 404 (832)
.+++|-+ .+.-.=+|+ + +++++.+... .. +..-+--| |
T Consensus 410 kiq~Lmk------------~ig~~~kpk---i--iD~t~q~~ta-~~----------------------l~Es~I~C--~ 447 (731)
T KOG0347|consen 410 KIQHLMK------------KIGFRGKPK---I--IDLTPQSATA-ST----------------------LTESLIEC--P 447 (731)
T ss_pred HHHHHHH------------HhCccCCCe---e--EecCcchhHH-HH----------------------HHHHhhcC--C
Confidence 1222211 111111221 1 2333322111 11 11112223 1
Q ss_pred ccccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHH
Q 003311 405 YLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLK 484 (832)
Q Consensus 405 ~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~ 484 (832)
-+...-+-. -+ +..-..|.||||+..+.+..|.-+|...+++.+.||.+|.+++|...++
T Consensus 448 ~~eKD~yly-----------------Yf---l~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLE 507 (731)
T KOG0347|consen 448 PLEKDLYLY-----------------YF---LTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLE 507 (731)
T ss_pred ccccceeEE-----------------EE---EeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHH
Confidence 111110000 00 1122458999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeC-------------
Q 003311 485 QFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV------------- 551 (832)
Q Consensus 485 ~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~------------- 551 (832)
+|....+. +||+|+++++|||++.+.+||||..|-....|++|-||..|.+.. .|.|. ||.+
T Consensus 508 kF~~~~~~---VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~-Gvsvm-l~~P~e~~~~~KL~ktL 582 (731)
T KOG0347|consen 508 KFKQSPSG---VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE-GVSVM-LCGPQEVGPLKKLCKTL 582 (731)
T ss_pred HHhcCCCe---EEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCC-CeEEE-EeChHHhHHHHHHHHHH
Confidence 99985554 899999999999999999999999999999999999999997632 23332 2221
Q ss_pred --------CCHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHhcccCCCCCC
Q 003311 552 --------GSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLKEIMRRGTSSLGTDV 606 (832)
Q Consensus 552 --------~siEe~Il~~~~~K~~l~~~vi~~g~~~~~~~~~~~~~~l~~il~~~~~~~~~~~ 606 (832)
-.|++.|+..++.+-.|+..+-..+.-.... ..-+.+|+..+.+++-++
T Consensus 583 ~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~~e~k~~~v------~~~~sWlkkaA~el~id~ 639 (731)
T KOG0347|consen 583 KKKEDLPIFPVETDIMDALKERVRLAREIDKLEIKSKRV------RKEESWLKKAADELGIDV 639 (731)
T ss_pred hhccCCCceeccHHHHHHHHHHHHHHHHHHHhhhhhhhh------hhhHHHHHHHHHHhCCcc
Confidence 3468889999988888888876544322221 223467888777776554
No 73
>PRK09401 reverse gyrase; Reviewed
Probab=99.80 E-value=8.7e-18 Score=210.01 Aligned_cols=293 Identities=15% Similarity=0.180 Sum_probs=191.8
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCC-
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS- 189 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~- 189 (832)
|.+|+|+|..++..++. +.+.++..+||+|||..++.++.++.. ....+|||||. .|+.||...|.+++..
T Consensus 78 G~~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~l~~~~~l~~---~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFGLVMSLYLAK---KGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred CCCCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 56899999998877765 788899999999999654444433322 24579999997 7889999999998753
Q ss_pred -ceEEEE--cCC--hhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChh-----------
Q 003311 190 -IAAVVY--DGR--PDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHE----------- 253 (832)
Q Consensus 190 -~~v~~~--~g~--~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~----------- 253 (832)
..+.+. ++. ...+......+.. +.++|+|+|++.+.+....+....+++|||||||++-..+
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~--~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lG 228 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKE--GDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLG 228 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhc--CCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCC
Confidence 333332 222 2223333222221 5789999999999988776776779999999999985311
Q ss_pred ---hHHHHHHHccc-------------------------cceEEEeeccCCCCCHHH-HH-HHHhccCCCCCCChHHHHH
Q 003311 254 ---CALAKTISGYQ-------------------------IQRRLLLTGTPIQNSLQE-LW-SLLNFLLPTIFNSVENFEE 303 (832)
Q Consensus 254 ---sk~~kal~~l~-------------------------~~~rllLTGTPlqN~l~E-L~-sLl~fL~p~~f~~~~~F~~ 303 (832)
..+..++..++ ....++.|||.-...+.. ++ .++.|
T Consensus 229 F~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~-------------- 294 (1176)
T PRK09401 229 FSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGF-------------- 294 (1176)
T ss_pred CCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceE--------------
Confidence 12222222222 234566777754321111 00 00000
Q ss_pred HhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccC
Q 003311 304 WFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTG 383 (832)
Q Consensus 304 ~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~ 383 (832)
-+.+. ...+.......+.
T Consensus 295 ---------------------------------~v~~~----~~~~rnI~~~yi~------------------------- 312 (1176)
T PRK09401 295 ---------------------------------EVGSP----VFYLRNIVDSYIV------------------------- 312 (1176)
T ss_pred ---------------------------------EecCc----ccccCCceEEEEE-------------------------
Confidence 00000 0000000000000
Q ss_pred CCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhH---HHHHHHHH
Q 003311 384 TGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRL---MDILEIYL 460 (832)
Q Consensus 384 ~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~---ldiL~~~L 460 (832)
...|...|.+++..+ +..+||||+.... ++.|..+|
T Consensus 313 --------------------------------------~~~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L 351 (1176)
T PRK09401 313 --------------------------------------DEDSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYL 351 (1176)
T ss_pred --------------------------------------cccHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHH
Confidence 003455566666554 4579999998766 99999999
Q ss_pred HhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEe----ccccccccCccc-CCeEEEeCCCC------ChhhHHH
Q 003311 461 KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS----TRAGGLGLNLQT-ADTVIIFDSDW------NPQMDQQ 529 (832)
Q Consensus 461 ~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlS----t~agg~GLNL~~-ad~VI~~D~~w------Np~~~~Q 529 (832)
...|+++..+||++ ...+++|.++..+ +||+ |..+++|||++. ..+||+|+.|- ....+..
T Consensus 352 ~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~ 423 (1176)
T PRK09401 352 EDLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPF 423 (1176)
T ss_pred HHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHH
Confidence 99999999999999 2346999998866 5666 689999999999 89999999997 6677888
Q ss_pred HhhhccccC
Q 003311 530 AEDRAHRIG 538 (832)
Q Consensus 530 AigRahRiG 538 (832)
+++|...+-
T Consensus 424 ~~~r~~~~~ 432 (1176)
T PRK09401 424 LLLRLLSLL 432 (1176)
T ss_pred HHHHHHhhc
Confidence 888886443
No 74
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.79 E-value=1.1e-18 Score=184.83 Aligned_cols=322 Identities=21% Similarity=0.315 Sum_probs=212.3
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHH-HHHHHHHHHh------cCCCCCE-EEEeCCCc-hHHHHHHHH
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT-IALIAYLLEN------KGVTGPH-VIVAPKAV-LPNWINEFS 184 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqa-iali~~l~~~------~~~~~p~-LIV~P~sl-l~qW~~E~~ 184 (832)
++.|.|.+|+--+++ ++.-|-..-+|+|||++. +-+|...++. ....||+ |||||..- ..|-..-+.
T Consensus 192 ~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 677888888877766 666676677999999874 3333333332 1234565 99999744 444333333
Q ss_pred hh--------CCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH--HHHhhcCceEEEEeCCcccCCh--
Q 003311 185 TW--------APSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNH-- 252 (832)
Q Consensus 185 k~--------~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~--~~L~~~~w~~vIiDEaHriKN~-- 252 (832)
.+ .|.++..+.-|....+.++... ....++|+.|+..++.-. ..+.-.-..|+.+|||.|+-..
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v----~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGF 343 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVV----RRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGF 343 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHH----hcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccc
Confidence 33 2555655555555554443221 157889999998886532 2222234568999999998553
Q ss_pred hhHHHHHHHccccc-eEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHh
Q 003311 253 ECALAKTISGYQIQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHH 331 (832)
Q Consensus 253 ~sk~~kal~~l~~~-~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~ 331 (832)
..-....+..|++. ..|+.|||-- ..+ ..|.. ..
T Consensus 344 Eddir~iF~~FK~QRQTLLFSATMP-~KI------------------Q~FAk--------------------------SA 378 (610)
T KOG0341|consen 344 EDDIRTIFSFFKGQRQTLLFSATMP-KKI------------------QNFAK--------------------------SA 378 (610)
T ss_pred hhhHHHHHHHHhhhhheeeeecccc-HHH------------------HHHHH--------------------------hh
Confidence 33344444555543 4578888841 000 01100 00
Q ss_pred hhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccc
Q 003311 332 VIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEY 411 (832)
Q Consensus 332 ~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~ 411 (832)
+++|.. +.+ +.....++ +.+
T Consensus 379 LVKPvt-------------------vNV-----------------------GRAGAAsl-dVi----------------- 398 (610)
T KOG0341|consen 379 LVKPVT-------------------VNV-----------------------GRAGAASL-DVI----------------- 398 (610)
T ss_pred cccceE-------------------Eec-----------------------ccccccch-hHH-----------------
Confidence 111111 111 00001111 111
Q ss_pred cchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCC
Q 003311 412 NMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491 (832)
Q Consensus 412 ~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~ 491 (832)
..-+.+....|+..|.+-| ....-+|||||.-..-.|-|..||-..|+..+.|||+-.+++|...|+.|+.+..
T Consensus 399 ---QevEyVkqEaKiVylLeCL---QKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkK 472 (610)
T KOG0341|consen 399 ---QEVEYVKQEAKIVYLLECL---QKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKK 472 (610)
T ss_pred ---HHHHHHHhhhhhhhHHHHh---ccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCC
Confidence 1223445566766555554 4567799999999999999999999999999999999999999999999999887
Q ss_pred CceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHH
Q 003311 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVIL 559 (832)
Q Consensus 492 ~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il 559 (832)
+ +|++|++++-||+++...+||+||.|-.-.+|.+|+||.+|-|.+- ....||.+++-|..++
T Consensus 473 D---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~G--iATTfINK~~~esvLl 535 (610)
T KOG0341|consen 473 D---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTG--IATTFINKNQEESVLL 535 (610)
T ss_pred c---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcc--eeeeeecccchHHHHH
Confidence 7 7999999999999999999999999999999999999999998654 4445677766555444
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=2.9e-17 Score=195.93 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=104.5
Q ss_pred hhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 003311 421 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 500 (832)
Q Consensus 421 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt 500 (832)
....|+.+|...+......+.++||||......+.+...|...|+++..++|.+...++..+...++.+ . ++|+|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~---VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--A---VTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--e---EEEEc
Confidence 345689999999988777899999999999999999999999999999999999888887777777653 2 79999
Q ss_pred cccccccCc---ccCC-----eEEEeCCCCChhhHHHHhhhccccCCcCcE
Q 003311 501 RAGGLGLNL---QTAD-----TVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543 (832)
Q Consensus 501 ~agg~GLNL---~~ad-----~VI~~D~~wNp~~~~QAigRahRiGQ~k~V 543 (832)
..+|+|+|+ +.+. +||.+|.|-|+..|.|+.||++|.|..-.+
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 999999999 5777 999999999999999999999999876543
No 76
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=8.8e-17 Score=188.10 Aligned_cols=130 Identities=17% Similarity=0.256 Sum_probs=105.9
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
...|+..|.+++..+...+.++||||......+.+...|...|+++..|+|... +|+..+..|...... ++|+|.
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEcc
Confidence 356889999999888777889999999999999999999999999999999865 555666666544443 799999
Q ss_pred ccccccCcc---cCC-----eEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHH
Q 003311 502 AGGLGLNLQ---TAD-----TVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILER 561 (832)
Q Consensus 502 agg~GLNL~---~ad-----~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~ 561 (832)
.+|+|+|+. .+. +||.||.|-|+..|.|++||++|.|..-. .+.|++ .|+.++.+
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~--s~~~is---~eD~l~~~ 592 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGS--YEAILS---LEDDLLQS 592 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeE--EEEEec---hhHHHHHh
Confidence 999999998 444 99999999999999999999999986543 333443 35555544
No 77
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=1.2e-17 Score=182.32 Aligned_cols=317 Identities=22% Similarity=0.317 Sum_probs=211.1
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHH-HHHHHHh---cCCCCCE-EEEeCC-CchHHHHHHHHhhC
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLEN---KGVTGPH-VIVAPK-AVLPNWINEFSTWA 187 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaial-i~~l~~~---~~~~~p~-LIV~P~-sll~qW~~E~~k~~ 187 (832)
++.|.|.++|--.++ +...|--.-+|+|||-..+-- +.+.+.+ ....+|+ ||+||. .+..|-..|.++|+
T Consensus 245 kptpiq~qalptals----grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTALS----GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCcccccccccccc----cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 445555555544443 444555677999999765432 2333333 2345676 678886 67788889988885
Q ss_pred C--CceEEE-EcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH--HHhhcCceEEEEeCCcccCCh--hhHHHHHH
Q 003311 188 P--SIAAVV-YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNH--ECALAKTI 260 (832)
Q Consensus 188 p--~~~v~~-~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~--~L~~~~w~~vIiDEaHriKN~--~sk~~kal 260 (832)
. ++++++ |.|..... +... + . ..+.+||+|++.++.... ...-.+..|+|+|||.||-.. ..+..-+.
T Consensus 321 K~ygl~~v~~ygGgsk~e-Q~k~-L-k--~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~ 395 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWE-QSKE-L-K--EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIK 395 (731)
T ss_pred hhccceEEEeecCCcHHH-HHHh-h-h--cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHH
Confidence 3 455554 55544332 2211 1 1 467899999999876432 122235679999999999543 33444444
Q ss_pred Hccccc-eEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh--
Q 003311 261 SGYQIQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI-- 337 (832)
Q Consensus 261 ~~l~~~-~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfl-- 337 (832)
..+++. ..|+.|+|- ... +.+| .+.|+
T Consensus 396 ~hirpdrQtllFsaTf--------------------------~~k---------------------Ie~l---ard~L~d 425 (731)
T KOG0339|consen 396 QHIRPDRQTLLFSATF--------------------------KKK---------------------IEKL---ARDILSD 425 (731)
T ss_pred hhcCCcceEEEeeccc--------------------------hHH---------------------HHHH---HHHHhcC
Confidence 556554 457788872 000 1111 11111
Q ss_pred -hhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhh
Q 003311 338 -LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRK 416 (832)
Q Consensus 338 -lRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~ 416 (832)
+|++.-+|...= ..+...|. +|.
T Consensus 426 pVrvVqg~vgean-~dITQ~V~-----------------------------------------V~~-------------- 449 (731)
T KOG0339|consen 426 PVRVVQGEVGEAN-EDITQTVS-----------------------------------------VCP-------------- 449 (731)
T ss_pred CeeEEEeehhccc-cchhheee-----------------------------------------ecc--------------
Confidence 112211221100 00000111 110
Q ss_pred HHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEE
Q 003311 417 EEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMF 496 (832)
Q Consensus 417 ~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~ 496 (832)
....|+..|.+-|..+...| +||||..-....+.|...|...|+.+..++|++.+.+|.++|.+|+....+ +
T Consensus 450 ----s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~---V 521 (731)
T KOG0339|consen 450 ----SEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP---V 521 (731)
T ss_pred ----CcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc---e
Confidence 12347777777777765544 899999999999999999999999999999999999999999999998777 7
Q ss_pred EEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHH
Q 003311 497 LLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 555 (832)
Q Consensus 497 LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siE 555 (832)
|+.|+.+.+|+++....+||+||..-+-..+.|++||.+|-|.+ -..|.|||+...+
T Consensus 522 lvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 522 LVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred EEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 99999999999999999999999999999999999999999977 6788899876444
No 78
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.78 E-value=2.7e-17 Score=193.39 Aligned_cols=117 Identities=18% Similarity=0.208 Sum_probs=105.8
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
..|+.++.+.+..+...|.+|||||.+....+.+...|...|+++..++|. ..+|+..+..|..+... ++|+|..
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~---VtIATnm 462 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA---VTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce---EEEEecc
Confidence 458888888888888999999999999999999999999999999999998 77899999999776554 7999999
Q ss_pred cccccCccc-------CCeEEEeCCCCChhhHHHHhhhccccCCcCcEE
Q 003311 503 GGLGLNLQT-------ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVR 544 (832)
Q Consensus 503 gg~GLNL~~-------ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~ 544 (832)
+|+|+|+.. .-+||.++.|-|+..+.|+.||++|.|..-...
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceE
Confidence 999999988 569999999999999999999999999775533
No 79
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=2.4e-17 Score=181.34 Aligned_cols=362 Identities=18% Similarity=0.246 Sum_probs=200.8
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHh-c----CCCCC-EEEEeCC-CchHHHHHHHHhh
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN-K----GVTGP-HVIVAPK-AVLPNWINEFSTW 186 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~-~----~~~~p-~LIV~P~-sll~qW~~E~~k~ 186 (832)
.+.-.|..++--++. +...++-..+|+|||+..+.-|...+.. . ...|| .|||||. .++.|-.+-+++.
T Consensus 159 ~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 444567777766665 8888999999999999976655444432 1 22344 4999997 6677777777776
Q ss_pred CCCce----EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhc---CceEEEEeCCcccCC--hhhHHH
Q 003311 187 APSIA----AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKV---QWIYMIVDEGHRLKN--HECALA 257 (832)
Q Consensus 187 ~p~~~----v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~---~w~~vIiDEaHriKN--~~sk~~ 257 (832)
..... .++..|.+....+.+- . ...+|+|.|++.+..+...-..+ ...+||+|||.+|.. ..--+.
T Consensus 235 l~~~hWIVPg~lmGGEkkKSEKARL---R--KGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit 309 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSEKARL---R--KGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDIT 309 (708)
T ss_pred hcCceEEeeceeecccccccHHHHH---h--cCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHH
Confidence 54333 3344554432222211 1 67899999999998775443333 345699999999853 222233
Q ss_pred HHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 003311 258 KTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337 (832)
Q Consensus 258 kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfl 337 (832)
+.+..+.+ +||.-. +...+..++..+|-.-.
T Consensus 310 ~Il~~v~~----------~~~~e~---------------------------------------~~~~lp~q~q~mLlSAT 340 (708)
T KOG0348|consen 310 QILKAVHS----------IQNAEC---------------------------------------KDPKLPHQLQNMLLSAT 340 (708)
T ss_pred HHHHHHhh----------ccchhc---------------------------------------ccccccHHHHhHhhhhh
Confidence 33332211 000000 00000011111111111
Q ss_pred hhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccc---cccch
Q 003311 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVG---EYNMW 414 (832)
Q Consensus 338 lRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~---~~~~~ 414 (832)
|.-....+. ++.-+....|..+-+..|.. .....+.-.|.-|+-..- ..+..
T Consensus 341 Ltd~V~rLa-~~sLkDpv~I~ld~s~~~~~------------------------p~~~a~~ev~~~~~~~~l~~~~iPeq 395 (708)
T KOG0348|consen 341 LTDGVNRLA-DLSLKDPVYISLDKSHSQLN------------------------PKDKAVQEVDDGPAGDKLDSFAIPEQ 395 (708)
T ss_pred hHHHHHHHh-hccccCceeeeccchhhhcC------------------------cchhhhhhcCCcccccccccccCcHH
Confidence 111111111 11111111222111111100 000001111111111000 00000
Q ss_pred hhHHHHhhcchHH--HHHHHHHhhh--hcCCeEEEEecchhHHHHHHHHHH----h------------------CCCeEE
Q 003311 415 RKEEIIRASGKFE--LLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYLK----L------------------NDFKFL 468 (832)
Q Consensus 415 ~~~~l~~~S~Kl~--~L~~lL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~----~------------------~g~~~~ 468 (832)
-...++...+|+. .|..+|.... ....|+|||....++.+.=.+.|. . .+.++.
T Consensus 396 L~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~ 475 (708)
T KOG0348|consen 396 LLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFY 475 (708)
T ss_pred hhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEE
Confidence 0011122344443 3445554432 234589999988887766555542 1 245799
Q ss_pred EEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEE
Q 003311 469 RLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVL 548 (832)
Q Consensus 469 rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rL 548 (832)
+|||+|++++|..++..|..... .+|++|+++++||||+.+..||-||+|..+..|++|+||..|+|-+-.-.. |
T Consensus 476 rLHGsm~QeeRts~f~~Fs~~~~---~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--f 550 (708)
T KOG0348|consen 476 RLHGSMEQEERTSVFQEFSHSRR---AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--F 550 (708)
T ss_pred EecCchhHHHHHHHHHhhccccc---eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--E
Confidence 99999999999999999987554 389999999999999999999999999999999999999999998766433 3
Q ss_pred EeCCCHHHHHHHHHHHH
Q 003311 549 VSVGSIEEVILERAKQK 565 (832)
Q Consensus 549 it~~siEe~Il~~~~~K 565 (832)
..+.-.| .+..++.+
T Consensus 551 L~P~Eae--y~~~l~~~ 565 (708)
T KOG0348|consen 551 LLPSEAE--YVNYLKKH 565 (708)
T ss_pred ecccHHH--HHHHHHhh
Confidence 4444333 44444443
No 80
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.78 E-value=1.9e-17 Score=182.65 Aligned_cols=331 Identities=18% Similarity=0.245 Sum_probs=223.1
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHH-HHHHHHhc---CCCCCEEEEeCC-CchHHHHHHHHhhC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLENK---GVTGPHVIVAPK-AVLPNWINEFSTWA 187 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaial-i~~l~~~~---~~~~p~LIV~P~-sll~qW~~E~~k~~ 187 (832)
..+.+.|...+-..+. |...|-|.-+|+|||+..+.- +..|+..+ ...--+|||.|. -|..|--.-+.+..
T Consensus 90 v~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred ccHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 4888999999987776 777777999999999986543 44444432 112247999997 45566555555543
Q ss_pred C--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH---HHhhcCceEEEEeCCcccCChh--hHHHHHH
Q 003311 188 P--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ---YLKKVQWIYMIVDEGHRLKNHE--CALAKTI 260 (832)
Q Consensus 188 p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~---~L~~~~w~~vIiDEaHriKN~~--sk~~kal 260 (832)
. .+..-++-|..+..... .. ....+|+|||++.+..+.+ .|......++|+|||.|+-..+ ..+...+
T Consensus 166 k~h~fSaGLiiGG~~~k~E~-eR----i~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii 240 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFEL-ER----ISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAII 240 (758)
T ss_pred hccccccceeecCchhHHHH-Hh----hhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHH
Confidence 2 34444444544422211 11 1578999999999987644 3555577899999999996544 3455555
Q ss_pred Hcccc-ceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhh
Q 003311 261 SGYQI-QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339 (832)
Q Consensus 261 ~~l~~-~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllR 339 (832)
..++. +..|+.|||+. +++.+|..| ++-+|.+.+-..
T Consensus 241 ~~lP~~RQTLLFSATqt-~svkdLaRL-sL~dP~~vsvhe---------------------------------------- 278 (758)
T KOG0343|consen 241 ENLPKKRQTLLFSATQT-KSVKDLARL-SLKDPVYVSVHE---------------------------------------- 278 (758)
T ss_pred HhCChhheeeeeecccc-hhHHHHHHh-hcCCCcEEEEec----------------------------------------
Confidence 67744 55699999984 444554332 112221111000
Q ss_pred hhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHH
Q 003311 340 RKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEI 419 (832)
Q Consensus 340 R~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l 419 (832)
..+ .-+|. .|++. |+.
T Consensus 279 ---~a~--------------~atP~-------------------------------~L~Q~----y~~------------ 294 (758)
T KOG0343|consen 279 ---NAV--------------AATPS-------------------------------NLQQS----YVI------------ 294 (758)
T ss_pred ---ccc--------------ccChh-------------------------------hhhhe----EEE------------
Confidence 000 00000 01110 000
Q ss_pred HhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHh--CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 420 IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL--NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 420 ~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~--~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
+....|+.+|...+.... ..|.|||.........+...+.. .|++...|+|.+++..|.++..+|.... .++|
T Consensus 295 v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~---~~vL 369 (758)
T KOG0343|consen 295 VPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR---AVVL 369 (758)
T ss_pred EehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc---ceEE
Confidence 012346677777776543 45899999998888888777753 4999999999999999999999998743 3689
Q ss_pred EeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 003311 498 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM 566 (832)
Q Consensus 498 lSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~ 566 (832)
.+|+.+++||+++.+|.||-+|.|-+...|++|.||..|.+..-+..+|-. -+-||.|+.+++.|.
T Consensus 370 F~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~---psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 370 FCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT---PSEEEAMLKKLQKKK 435 (758)
T ss_pred EeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc---chhHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999987666544332 445688998888774
No 81
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.77 E-value=4.2e-17 Score=193.37 Aligned_cols=329 Identities=16% Similarity=0.172 Sum_probs=198.4
Q ss_pred CCCcCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHH----------HHH--HhcCCCCCEEEEeCC
Q 003311 106 QPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA----------YLL--ENKGVTGPHVIVAPK 173 (832)
Q Consensus 106 ~P~~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~----------~l~--~~~~~~~p~LIV~P~ 173 (832)
.|..+....|++.|.+.-+.++..+..+...|+..+||+|||.|.-.++. .+- ......++++|++|.
T Consensus 152 n~~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~Pr 231 (675)
T PHA02653 152 NPEPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPR 231 (675)
T ss_pred CCCccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcH
Confidence 34444557899988888888888888899999999999999987432221 111 001234589999996
Q ss_pred -CchHHHHHHHHhhC-----CCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCc
Q 003311 174 -AVLPNWINEFSTWA-----PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGH 247 (832)
Q Consensus 174 -sll~qW~~E~~k~~-----p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaH 247 (832)
.++.|...++.+.. ++..+.+..|..... ... ......+++|+|..... ..| .++.+|||||||
T Consensus 232 reLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~--~~~---t~~k~~~Ilv~T~~L~l---~~L--~~v~~VVIDEaH 301 (675)
T PHA02653 232 VALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDE--LIN---TNPKPYGLVFSTHKLTL---NKL--FDYGTVIIDEVH 301 (675)
T ss_pred HHHHHHHHHHHHHHhCccccCCceEEEEECCcchH--Hhh---cccCCCCEEEEeCcccc---ccc--ccCCEEEccccc
Confidence 45667777776532 334444444433321 100 01134679888854311 112 257899999999
Q ss_pred ccCChhhHHHHHHHcccc--ceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHH
Q 003311 248 RLKNHECALAKTISGYQI--QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLI 325 (832)
Q Consensus 248 riKN~~sk~~kal~~l~~--~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~ 325 (832)
..-.....+...++.... ...+++|||+-. ....+ ..|+ ..+.
T Consensus 302 Er~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~l---~~~~---------------~~p~---------------- 346 (675)
T PHA02653 302 EHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDRI---KEFF---------------PNPA---------------- 346 (675)
T ss_pred cCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHHH---HHHh---------------cCCc----------------
Confidence 986554444333433322 367999999732 12222 1222 1110
Q ss_pred HHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCc
Q 003311 326 IRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPY 405 (832)
Q Consensus 326 ~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~ 405 (832)
.+. .. ...+.+..+..+.....+.+...|-.
T Consensus 347 -----------~I~-I~---grt~~pV~~~yi~~~~~~~~~~~y~~---------------------------------- 377 (675)
T PHA02653 347 -----------FVH-IP---GGTLFPISEVYVKNKYNPKNKRAYIE---------------------------------- 377 (675)
T ss_pred -----------EEE-eC---CCcCCCeEEEEeecCcccccchhhhH----------------------------------
Confidence 000 00 00011111111111111111000000
Q ss_pred cccccccchhhHHHHhhcchHHHHHHHHHhh-hhcCCeEEEEecchhHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHH
Q 003311 406 LFVGEYNMWRKEEIIRASGKFELLDRLLPKL-RKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTL 482 (832)
Q Consensus 406 l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l-~~~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~rldG~ts~~eR~~~ 482 (832)
..|...+ ..+... ...+..+|||+.....++.+...|... ++.+..+||++++. ++.
T Consensus 378 -----------------~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~ 437 (675)
T PHA02653 378 -----------------EEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEI 437 (675)
T ss_pred -----------------HHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHH
Confidence 0011111 122221 124568999999999999999999876 79999999999964 567
Q ss_pred HHhh-cCCCCCceEEEEeccccccccCcccCCeEEEeC---CC---------CChhhHHHHhhhccccCCcCcEEEEEEE
Q 003311 483 LKQF-NAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFD---SD---------WNPQMDQQAEDRAHRIGQKKEVRVFVLV 549 (832)
Q Consensus 483 i~~F-n~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D---~~---------wNp~~~~QAigRahRiGQ~k~V~V~rLi 549 (832)
+++| +.+.. -+|+||..+++||+++++++||.++ .+ .+...+.||.||++|. ++-.+|+|.
T Consensus 438 l~~ff~~gk~---kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLy 511 (675)
T PHA02653 438 LEKVYSSKNP---SIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFY 511 (675)
T ss_pred HHHHhccCce---eEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEE
Confidence 7887 44433 3799999999999999999999997 22 2677899999999997 468899999
Q ss_pred eCCCH
Q 003311 550 SVGSI 554 (832)
Q Consensus 550 t~~si 554 (832)
++...
T Consensus 512 t~~~~ 516 (675)
T PHA02653 512 DLDLL 516 (675)
T ss_pred CHHHh
Confidence 88764
No 82
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.77 E-value=8.4e-17 Score=184.51 Aligned_cols=298 Identities=19% Similarity=0.297 Sum_probs=207.7
Q ss_pred CCchHHHHHHHHHHHHhhccC--CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCch-HHHHHHHHhhCC-
Q 003311 113 GELRAYQLEGLQWMLSLFNNN--LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-PNWINEFSTWAP- 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~--~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p- 188 (832)
.+|...|..++.-+..-.... .+-+|-.++|+|||+.|+..+......+ .-+.+.+|+.++ .|-...|.+|++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G---~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG---YQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC---CeeEEeccHHHHHHHHHHHHHHHhhh
Confidence 488899999999888754433 3458999999999999977776666654 356889998765 678899999987
Q ss_pred -CceEEEEcCCh--hHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc-c
Q 003311 189 -SIAAVVYDGRP--DERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-Q 264 (832)
Q Consensus 189 -~~~v~~~~g~~--~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l-~ 264 (832)
++.|....|+. ..|+.....+.. +..++||-|+..+.....+ .+..+|||||=||+.- .....+..- .
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l~~--G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFGV---~QR~~L~~KG~ 409 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQLAS--GEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFGV---HQRLALREKGE 409 (677)
T ss_pred cCCeEEEeecccchhHHHHHHHHHhC--CCCCEEEEcchhhhcceee---cceeEEEEeccccccH---HHHHHHHHhCC
Confidence 57777777754 345555555554 7899999999998754332 2467999999999853 333344222 3
Q ss_pred -cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHh
Q 003311 265 -IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343 (832)
Q Consensus 265 -~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~ 343 (832)
..+.|.||||||...+. |-- |++. .-
T Consensus 410 ~~Ph~LvMTATPIPRTLA----lt~------fgDl-------------------------------------------dv 436 (677)
T COG1200 410 QNPHVLVMTATPIPRTLA----LTA------FGDL-------------------------------------------DV 436 (677)
T ss_pred CCCcEEEEeCCCchHHHH----HHH------hccc-------------------------------------------cc
Confidence 58999999999977653 110 1110 01
Q ss_pred HHhhcCCCC-eEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhh
Q 003311 344 EVEKYLPGK-SQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 422 (832)
Q Consensus 344 dv~~~LP~k-~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~ 422 (832)
.+.+++|+. ..+.-.+-....-.++|..
T Consensus 437 S~IdElP~GRkpI~T~~i~~~~~~~v~e~--------------------------------------------------- 465 (677)
T COG1200 437 SIIDELPPGRKPITTVVIPHERRPEVYER--------------------------------------------------- 465 (677)
T ss_pred hhhccCCCCCCceEEEEeccccHHHHHHH---------------------------------------------------
Confidence 233457776 2222222111111122222
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhH--------HHHHHHHHH--hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRL--------MDILEIYLK--LNDFKFLRLDGSTKTEERGTLLKQFNAPDSP 492 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~--------ldiL~~~L~--~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~ 492 (832)
+-.+ ...|+++.+.|.-.+. +..+...|. ..++++..+||.|+.+++++++.+|+++..+
T Consensus 466 ---------i~~e-i~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ 535 (677)
T COG1200 466 ---------IREE-IAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID 535 (677)
T ss_pred ---------HHHH-HHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc
Confidence 2222 2357777777765422 223333343 3477899999999999999999999998877
Q ss_pred ceEEEEeccccccccCcccCCeEEEeCCC-CChhhHHHHhhhccccC
Q 003311 493 YFMFLLSTRAGGLGLNLQTADTVIIFDSD-WNPQMDQQAEDRAHRIG 538 (832)
Q Consensus 493 ~~v~LlSt~agg~GLNL~~ad~VI~~D~~-wNp~~~~QAigRahRiG 538 (832)
+|+||-+..+|+|++.|+.+||.++. +--++.-|-.||++|=+
T Consensus 536 ---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~ 579 (677)
T COG1200 536 ---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGD 579 (677)
T ss_pred ---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCC
Confidence 79999999999999999999999986 57889999999999944
No 83
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.77 E-value=1.4e-16 Score=178.18 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=71.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCC--CeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEE
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLND--FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 516 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g--~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI 516 (832)
.+.++||||+....++.+...|...+ +.+..++|.++..+|.+.. .. .+|++|.++++|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~---~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QF---DILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cC---CEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999998764 6788999999999887653 22 27999999999999986 4666
Q ss_pred EeCCCCChhhHHHHhhhcc
Q 003311 517 IFDSDWNPQMDQQAEDRAH 535 (832)
Q Consensus 517 ~~D~~wNp~~~~QAigRah 535 (832)
++ +-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 678999999999975
No 84
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.75 E-value=2e-17 Score=184.81 Aligned_cols=321 Identities=19% Similarity=0.231 Sum_probs=218.5
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC---C
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP---S 189 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p---~ 189 (832)
.+.+.|..++-.... +..-|+-.-.|+|||++...++..-+......--.+||+|. -+.-|-.+-|.+.+| +
T Consensus 47 ~ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g 122 (980)
T KOG4284|consen 47 LPTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTG 122 (980)
T ss_pred CCCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccC
Confidence 556788888876665 77889999999999987533332222222333457999997 556777788888877 5
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH--HHHhhcCceEEEEeCCcccCChhh---HHHHHHHccc
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNHEC---ALAKTISGYQ 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~--~~L~~~~w~~vIiDEaHriKN~~s---k~~kal~~l~ 264 (832)
+++.+|.|.......... ..+..|+|-|++.+..-. ..+.--+.+++|+|||..+-...+ .....+..++
T Consensus 123 ~~csvfIGGT~~~~d~~r-----lk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP 197 (980)
T KOG4284|consen 123 ARCSVFIGGTAHKLDLIR-----LKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLP 197 (980)
T ss_pred cceEEEecCchhhhhhhh-----hhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcc
Confidence 778888776554322211 156779999999886532 334445678999999999965443 5566666664
Q ss_pred -cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhh-hhhhhhhH
Q 003311 265 -IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIR-PFILRRKK 342 (832)
Q Consensus 265 -~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~-pfllRR~k 342 (832)
.+..++.|||=- .+|.++ |.++++ |.++|-..
T Consensus 198 ~~rQv~a~SATYp-~nLdn~---------------------------------------------Lsk~mrdp~lVr~n~ 231 (980)
T KOG4284|consen 198 QIRQVAAFSATYP-RNLDNL---------------------------------------------LSKFMRDPALVRFNA 231 (980)
T ss_pred hhheeeEEeccCc-hhHHHH---------------------------------------------HHHHhcccceeeccc
Confidence 456688999842 223222 222322 22222222
Q ss_pred hHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhh
Q 003311 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 422 (832)
Q Consensus 343 ~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~ 422 (832)
.++.. +--+..++..|...-.- ...
T Consensus 232 ~d~~L-~GikQyv~~~~s~nnsv------------------------------------------------------eem 256 (980)
T KOG4284|consen 232 DDVQL-FGIKQYVVAKCSPNNSV------------------------------------------------------EEM 256 (980)
T ss_pred CCcee-echhheeeeccCCcchH------------------------------------------------------HHH
Confidence 22210 11122222222211000 011
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
--|++.|..++..+.- ...||||....-++-+..+|...|+.+..|.|.|++.+|..+++.++.-. + -+|+||+.
T Consensus 257 rlklq~L~~vf~~ipy--~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~--~-rILVsTDL 331 (980)
T KOG4284|consen 257 RLKLQKLTHVFKSIPY--VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFR--V-RILVSTDL 331 (980)
T ss_pred HHHHHHHHHHHhhCch--HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhce--E-EEEEecch
Confidence 1256666666666532 36899999999999999999999999999999999999999999998743 2 37999999
Q ss_pred cccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEe
Q 003311 503 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVS 550 (832)
Q Consensus 503 gg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit 550 (832)
.++||+-..++.||.+|+|-+-..|.+|||||+|.|..- ..|..+..
T Consensus 332 taRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G-~aVT~~~~ 378 (980)
T KOG4284|consen 332 TARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG-AAVTLLED 378 (980)
T ss_pred hhccCCccccceEEecCCCcchHHHHHHhhhcccccccc-eeEEEecc
Confidence 999999999999999999999999999999999999653 44444443
No 85
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=192.09 Aligned_cols=310 Identities=24% Similarity=0.206 Sum_probs=198.6
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC-CCce
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA-PSIA 191 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~-p~~~ 191 (832)
+|+|.|++++.-.+. .+.|.++|.+||+|||++|+.+|...+... .++++.|||. +|..+-.++|.+|- -+++
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 899999999975443 378999999999999999976665554433 5699999996 78888889998553 2789
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHH--hhcCceEEEEeCCcccCCh-h-----hHHHHHHHcc
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL--KKVQWIYMIVDEGHRLKNH-E-----CALAKTISGY 263 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L--~~~~w~~vIiDEaHriKN~-~-----sk~~kal~~l 263 (832)
|..+.|......... ..++|+|||||.+-.-.... --...++|||||+|.+... . +-.+++...-
T Consensus 106 V~~~TgD~~~~~~~l-------~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~ 178 (766)
T COG1204 106 VGISTGDYDLDDERL-------ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN 178 (766)
T ss_pred EEEecCCcccchhhh-------ccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC
Confidence 999999876443211 68899999999885321111 1125679999999999765 1 2233333222
Q ss_pred ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHh
Q 003311 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343 (832)
Q Consensus 264 ~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~ 343 (832)
..-+.++||||- .|..|+-.+ |+...+.+.- +|.-++|.
T Consensus 179 ~~~rivgLSATl--pN~~evA~w---L~a~~~~~~~----------------------------------rp~~l~~~-- 217 (766)
T COG1204 179 ELIRIVGLSATL--PNAEEVADW---LNAKLVESDW----------------------------------RPVPLRRG-- 217 (766)
T ss_pred cceEEEEEeeec--CCHHHHHHH---hCCcccccCC----------------------------------CCcccccC--
Confidence 235789999994 333443332 2222221111 11111110
Q ss_pred HHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhc
Q 003311 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 423 (832)
Q Consensus 344 dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S 423 (832)
.|..... .... +..+ ....
T Consensus 218 -----v~~~~~~-~~~~----------------------~~~k---------------------------------~~~~ 236 (766)
T COG1204 218 -----VPYVGAF-LGAD----------------------GKKK---------------------------------TWPL 236 (766)
T ss_pred -----CccceEE-EEec----------------------Cccc---------------------------------cccc
Confidence 1111110 0000 0000 0011
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHh----C---------------------------------CCe
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL----N---------------------------------DFK 466 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~----~---------------------------------g~~ 466 (832)
.+...+..++....+.|..||||+++.......+..|.. . -..
T Consensus 237 ~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~G 316 (766)
T COG1204 237 LIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRG 316 (766)
T ss_pred cchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhC
Confidence 222344455555567789999999987655544444431 0 012
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE-----eC-----CCCChhhHHHHhhhccc
Q 003311 467 FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII-----FD-----SDWNPQMDQQAEDRAHR 536 (832)
Q Consensus 467 ~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~-----~D-----~~wNp~~~~QAigRahR 536 (832)
+...|.+++.++|+-+-+.|+.+..+ +|+||.....|+||++ ++||+ || -+-++..+.|..|||+|
T Consensus 317 vafHhAGL~~~~R~~vE~~Fr~g~ik---Vlv~TpTLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGR 392 (766)
T COG1204 317 VAFHHAGLPREDRQLVEDAFRKGKIK---VLVSTPTLAAGVNLPA-RTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGR 392 (766)
T ss_pred ccccccCCCHHHHHHHHHHHhcCCce---EEEechHHhhhcCCcc-eEEEEeeeEEEcCCCCeEECchhhHhhccCcCCC
Confidence 45567889999999999999998876 7999999999999985 55555 55 33478889999999999
Q ss_pred cCCcC
Q 003311 537 IGQKK 541 (832)
Q Consensus 537 iGQ~k 541 (832)
.|=.-
T Consensus 393 Pg~d~ 397 (766)
T COG1204 393 PGYDD 397 (766)
T ss_pred CCcCC
Confidence 98443
No 86
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.74 E-value=6.4e-16 Score=185.57 Aligned_cols=358 Identities=21% Similarity=0.179 Sum_probs=197.0
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCc
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSI 190 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~ 190 (832)
...|.++|.+++..+.... .+...+|...||+|||...+.++...+.. .+.+||++|. .+..||.+.|.++++ .
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg-~ 216 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARFG-A 216 (679)
T ss_pred CCCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-C
Confidence 3579999999999887643 34567899999999999998777666554 3478999996 788999999999885 4
Q ss_pred eEEEEcCChh--HHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCCh--hh-----H-HHHHH
Q 003311 191 AAVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNH--EC-----A-LAKTI 260 (832)
Q Consensus 191 ~v~~~~g~~~--~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~--~s-----k-~~kal 260 (832)
.+.+++|... .+........ .+..+|||+|...+. +.-.++.+|||||+|...-. .. . +....
T Consensus 217 ~v~~~~s~~s~~~r~~~~~~~~--~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~r 289 (679)
T PRK05580 217 PVAVLHSGLSDGERLDEWRKAK--RGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVR 289 (679)
T ss_pred CEEEEECCCCHHHHHHHHHHHH--cCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHH
Confidence 6666666433 3322222222 256899999987653 22235789999999986321 11 1 11111
Q ss_pred HccccceEEEeeccCCCCCHHHHHH-HHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhh
Q 003311 261 SGYQIQRRLLLTGTPIQNSLQELWS-LLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILR 339 (832)
Q Consensus 261 ~~l~~~~rllLTGTPlqN~l~EL~s-Ll~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllR 339 (832)
........+++||||....+..... -+.++.
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~g~~~~~~------------------------------------------------ 321 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQGRYRLLR------------------------------------------------ 321 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhccceeEEE------------------------------------------------
Confidence 2335567899999995221111000 000000
Q ss_pred hhHhHH-hhcCCCCeEEEEEc----------CCCHHHHHHHHHHHHhccccc--ccCCCcchhHHHHHHHHHHhhCCCcc
Q 003311 340 RKKDEV-EKYLPGKSQVILKC----------DMSAWQKVYYQQVTDVGRVGL--DTGTGKSKSLQNLSMQLRKCCNHPYL 406 (832)
Q Consensus 340 R~k~dv-~~~LP~k~e~~v~~----------~ms~~Q~~lY~~i~~~~~~~~--~~~~~~~~~l~~~~~~LRk~cnhP~l 406 (832)
..... ...+|.. .++.. .++..-....+...+.+...+ -+..+-.. .-.+.-|.+...
T Consensus 322 -l~~r~~~~~~p~v--~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~------~~~C~~Cg~~~~ 392 (679)
T PRK05580 322 -LTKRAGGARLPEV--EIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAP------FLLCRDCGWVAE 392 (679)
T ss_pred -eccccccCCCCeE--EEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCC------ceEhhhCcCccC
Confidence 00000 0012211 11110 011111111111111110000 00000000 001112222111
Q ss_pred ccccccchhhHHHHh-h---------cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC--CCeEEEEcCCC
Q 003311 407 FVGEYNMWRKEEIIR-A---------SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGST 474 (832)
Q Consensus 407 ~~~~~~~~~~~~l~~-~---------S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~rldG~t 474 (832)
. ..-.. .+.- . ++.-..+-...+. -|.. .|..+..-.+.+++.|... +.++.++||.+
T Consensus 393 C--~~C~~---~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~---Cg~~--~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~ 462 (679)
T PRK05580 393 C--PHCDA---SLTLHRFQRRLRCHHCGYQEPIPKACPE---CGST--DLVPVGPGTERLEEELAELFPEARILRIDRDT 462 (679)
T ss_pred C--CCCCC---ceeEECCCCeEECCCCcCCCCCCCCCCC---CcCC--eeEEeeccHHHHHHHHHHhCCCCcEEEEeccc
Confidence 0 00000 0000 0 0000000000000 0111 1333334566777777653 88999999998
Q ss_pred C--HHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCC---CCh---------hhHHHHhhhccccCCc
Q 003311 475 K--TEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSD---WNP---------QMDQQAEDRAHRIGQK 540 (832)
Q Consensus 475 s--~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~---wNp---------~~~~QAigRahRiGQ~ 540 (832)
. .++++.++++|.++..+ +|++|.....|+|++.++.|+++|.| ..| +.+.|+.||++|.|..
T Consensus 463 ~~~~~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~ 539 (679)
T PRK05580 463 TRRKGALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKP 539 (679)
T ss_pred cccchhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCC
Confidence 6 46799999999998777 78999999999999999999988776 223 6799999999998877
Q ss_pred CcEEEEEEEeC
Q 003311 541 KEVRVFVLVSV 551 (832)
Q Consensus 541 k~V~V~rLit~ 551 (832)
..|.+...-..
T Consensus 540 g~viiqT~~p~ 550 (679)
T PRK05580 540 GEVLIQTYHPE 550 (679)
T ss_pred CEEEEEeCCCC
Confidence 76666544433
No 87
>COG4889 Predicted helicase [General function prediction only]
Probab=99.74 E-value=1.5e-17 Score=190.30 Aligned_cols=386 Identities=19% Similarity=0.204 Sum_probs=202.9
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC--C
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--P 188 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~--p 188 (832)
..+|||||..++....+.+..+-+|=|-+.+|+|||.+++-+...+.. ..+|.+||. +|+.|--+|+..-. +
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~ 233 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELD 233 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCcc
Confidence 359999999999999999988999999999999999999988877655 478999996 78887544443221 1
Q ss_pred CceEEEEcCCh-------------------hHHHHHHHHH--HhhcCCccEEecCHHHHHHh--HHHHhhcCceEEEEeC
Q 003311 189 SIAAVVYDGRP-------------------DERKAMREEF--FSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDE 245 (832)
Q Consensus 189 ~~~v~~~~g~~-------------------~~r~~~~~~~--~~~~~~~dVvItTye~l~~d--~~~L~~~~w~~vIiDE 245 (832)
-....+....+ +.+ .+...+ +....+.-||++||+.+-.- .....--.|++||+||
T Consensus 234 ~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~-~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDE 312 (1518)
T COG4889 234 FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLE-DILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDE 312 (1518)
T ss_pred ceeEEEecCccccccccccccccCCCCCcccHH-HHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecc
Confidence 11111111111 111 111111 11224566999999998553 3334445899999999
Q ss_pred CcccCC------hhhHHHHHH--HccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccC--cc
Q 003311 246 GHRLKN------HECALAKTI--SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG--QV 315 (832)
Q Consensus 246 aHriKN------~~sk~~kal--~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~--~~ 315 (832)
|||--. ..|.+++.- ..+++..|+.|||||- +|+... ...-.... ..
T Consensus 313 AHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPk-----------------iy~eS~------K~kAkd~s~~l~ 369 (1518)
T COG4889 313 AHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPK-----------------IYSESS------KAKAKDHSAELS 369 (1518)
T ss_pred hhccccceecccCcccceeecCcchhHHHHhhhcccCch-----------------hhchhh------hhhhhhccceee
Confidence 999732 334444443 4557788999999993 111100 00000000 00
Q ss_pred cCChHHHHHHHHHHHhhhhhhhhhhhHhHHhh-cCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHH
Q 003311 316 ALTDEEQLLIIRRLHHVIRPFILRRKKDEVEK-YLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLS 394 (832)
Q Consensus 316 ~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~~-~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~ 394 (832)
.+.++. ..-..+|.+ -.-+.|+. -|.+....++.++--..+..+-..+..-... + ++-
T Consensus 370 SMDDe~--~fGeef~rl-------~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~-L-----------~~d 428 (1518)
T COG4889 370 SMDDEL--TFGEEFHRL-------GFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKG-L-----------ALD 428 (1518)
T ss_pred ccchhh--hhchhhhcc-------cHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccc-c-----------chh
Confidence 011110 000011111 01112222 2455555555555333222222211110000 0 000
Q ss_pred HHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHH----hCCCeEEEE
Q 003311 395 MQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRL 470 (832)
Q Consensus 395 ~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rl 470 (832)
+--+-+.+|-.|.................+-++......+.+..+. =|--+|..+++.....|. ...+.+-.+
T Consensus 429 d~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK---~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~Hv 505 (1518)
T COG4889 429 DVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSK---QIAESFETVVEAYDEELKKDFKNLKISIDHV 505 (1518)
T ss_pred hhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHhcCCCceEEeecc
Confidence 0001111121111110000000000000011111111111111100 011123333333332332 224567779
Q ss_pred cCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCc-EEEEEEE
Q 003311 471 DGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE-VRVFVLV 549 (832)
Q Consensus 471 dG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~-V~V~rLi 549 (832)
||+|...+|...+..-+.-.+..+-+|-..||+++|+++++.|.||+|||--+....+||+||+.|....|. -+|+--|
T Consensus 506 DGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 506 DGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred cccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 999999999776655544233344579999999999999999999999999888889999999999877666 5555544
Q ss_pred e
Q 003311 550 S 550 (832)
Q Consensus 550 t 550 (832)
+
T Consensus 586 a 586 (1518)
T COG4889 586 A 586 (1518)
T ss_pred c
Confidence 3
No 88
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.74 E-value=1.5e-16 Score=199.21 Aligned_cols=279 Identities=16% Similarity=0.210 Sum_probs=179.0
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCC-
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS- 189 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~- 189 (832)
+..|.|+|..++..++. +.+.++..+||+|||..++.++.++... ...+|||+|. .++.|+.+.|..++..
T Consensus 76 g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~~---g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAKK---GKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred CCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 45899999999887775 7888999999999998665555444332 3579999996 6788999999988753
Q ss_pred -ce---EEEEcCChhH--HHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhh---------
Q 003311 190 -IA---AVVYDGRPDE--RKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC--------- 254 (832)
Q Consensus 190 -~~---v~~~~g~~~~--r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~s--------- 254 (832)
+. +.+|+|.... +......+.. +.++|+|+|++.+.+....+.. .++++||||||++-....
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~l~~--~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~il~ll 225 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMERIEN--GDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKASKNVDKLLKLL 225 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhccccHHHHHHHc
Confidence 22 2346664332 2222222222 5699999999999887666654 799999999999954210
Q ss_pred -----HHHHHH----------------------Hccccce---EEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHH
Q 003311 255 -----ALAKTI----------------------SGYQIQR---RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEW 304 (832)
Q Consensus 255 -----k~~kal----------------------~~l~~~~---rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~ 304 (832)
.+..++ ..+...+ .++.|||+........+ +. .+++
T Consensus 226 GF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l--~r----~ll~-------- 291 (1171)
T TIGR01054 226 GFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL--FR----ELLG-------- 291 (1171)
T ss_pred CCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH--cc----cccc--------
Confidence 011111 1122221 24469995433222110 00 0000
Q ss_pred hcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCC
Q 003311 305 FNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT 384 (832)
Q Consensus 305 f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~ 384 (832)
|. +.+. ...+.......+.
T Consensus 292 ~~-------------------------------v~~~----~~~~r~I~~~~~~-------------------------- 310 (1171)
T TIGR01054 292 FE-------------------------------VGGG----SDTLRNVVDVYVE-------------------------- 310 (1171)
T ss_pred eE-------------------------------ecCc----cccccceEEEEEe--------------------------
Confidence 00 0000 0000000000000
Q ss_pred CcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecch---hHHHHHHHHHH
Q 003311 385 GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMT---RLMDILEIYLK 461 (832)
Q Consensus 385 ~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~---~~ldiL~~~L~ 461 (832)
...+...|.+++..+ |..+|||++.. ..++.|..+|.
T Consensus 311 -------------------------------------~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~ 350 (1171)
T TIGR01054 311 -------------------------------------DEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLE 350 (1171)
T ss_pred -------------------------------------cccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHH
Confidence 001123345555543 56799999998 99999999999
Q ss_pred hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEe----ccccccccCccc-CCeEEEeCCCC
Q 003311 462 LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS----TRAGGLGLNLQT-ADTVIIFDSDW 522 (832)
Q Consensus 462 ~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlS----t~agg~GLNL~~-ad~VI~~D~~w 522 (832)
..|+++..+||.++ +..+++|.++..+ +||+ |..+++|||++. .++||+||.|-
T Consensus 351 ~~g~~a~~lhg~~~----~~~l~~Fr~G~~~---vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 351 NHGVKAVAYHATKP----KEDYEKFAEGEID---VLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred hCCceEEEEeCCCC----HHHHHHHHcCCCC---EEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 99999999999987 3689999998866 5666 589999999999 89999999983
No 89
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.74 E-value=4.7e-16 Score=189.24 Aligned_cols=329 Identities=18% Similarity=0.212 Sum_probs=223.2
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHH-HHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC---C
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P 188 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~-~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~---p 188 (832)
.|+.||.++++.+.+ +.+.|+.-.||+|||...+..|. .++... ....|+|-|+ .|.....+.|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~~--~a~AL~lYPtnALa~DQ~~rl~~~~~~~~ 143 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRDP--SARALLLYPTNALANDQAERLRELISDLP 143 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhCc--CccEEEEechhhhHhhHHHHHHHHHHhCC
Confidence 499999999987775 89999999999999999865554 444433 3478999996 56666888888874 4
Q ss_pred -CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh------HHHHhhcCceEEEEeCCcccCC-hhhHHHHHH
Q 003311 189 -SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD------RQYLKKVQWIYMIVDEGHRLKN-HECALAKTI 260 (832)
Q Consensus 189 -~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d------~~~L~~~~w~~vIiDEaHriKN-~~sk~~kal 260 (832)
.+.+..|.|........ .+.. .+++|++|+|+++.-. ......-.+.+|||||+|-.+. .+|-++-.+
T Consensus 144 ~~v~~~~y~Gdt~~~~r~--~~~~--~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~ll 219 (851)
T COG1205 144 GKVTFGRYTGDTPPEERR--AIIR--NPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLL 219 (851)
T ss_pred CcceeeeecCCCChHHHH--HHHh--CCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHH
Confidence 56788899865432221 1122 7899999999998542 1112222488999999999976 455555555
Q ss_pred Hcc--------ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHH-HhcccccccCcccCChHHHHHHHHHHHh
Q 003311 261 SGY--------QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEE-WFNAPFKDRGQVALTDEEQLLIIRRLHH 331 (832)
Q Consensus 261 ~~l--------~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~-~f~~~~~~~~~~~~~~ee~~~~~~~L~~ 331 (832)
+++ .....++.|||- .+. ..|.+ .+...|...
T Consensus 220 RRL~~~~~~~~~~~q~i~~SAT~--~np------------------~e~~~~l~~~~f~~~------------------- 260 (851)
T COG1205 220 RRLLRRLRRYGSPLQIICTSATL--ANP------------------GEFAEELFGRDFEVP------------------- 260 (851)
T ss_pred HHHHHHHhccCCCceEEEEeccc--cCh------------------HHHHHHhcCCcceee-------------------
Confidence 444 134568888883 222 22222 122111110
Q ss_pred hhhhhhhhhhHhHHh-hcCCCCeEE-EEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccc
Q 003311 332 VIRPFILRRKKDEVE-KYLPGKSQV-ILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVG 409 (832)
Q Consensus 332 ~L~pfllRR~k~dv~-~~LP~k~e~-~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~ 409 (832)
|. .--|....+ +++-+........
T Consensus 261 -------------v~~~g~~~~~~~~~~~~p~~~~~~~~----------------------------------------- 286 (851)
T COG1205 261 -------------VDEDGSPRGLRYFVRREPPIRELAES----------------------------------------- 286 (851)
T ss_pred -------------ccCCCCCCCceEEEEeCCcchhhhhh-----------------------------------------
Confidence 00 001111111 1111111000000
Q ss_pred cccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHH----HHHHhCC----CeEEEEcCCCCHHHHHH
Q 003311 410 EYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILE----IYLKLND----FKFLRLDGSTKTEERGT 481 (832)
Q Consensus 410 ~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~----~~L~~~g----~~~~rldG~ts~~eR~~ 481 (832)
....+...+..++..+...|-++|+|+.+...+..+. ..+...+ ..+..+.|++...+|..
T Consensus 287 -----------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ 355 (851)
T COG1205 287 -----------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRR 355 (851)
T ss_pred -----------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHH
Confidence 0123555667777777788999999999999988886 3333344 57888999999999999
Q ss_pred HHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCC-ChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHH
Q 003311 482 LLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILE 560 (832)
Q Consensus 482 ~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~w-Np~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~ 560 (832)
+...|+.++.. ++++|.|+-.|+++...+.||....|- .-..+.|+.|||+|-||.-. ++...-.+.++..+..
T Consensus 356 ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l--~~~v~~~~~~d~yy~~ 430 (851)
T COG1205 356 IEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESL--VLVVLRSDPLDSYYLR 430 (851)
T ss_pred HHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCce--EEEEeCCCccchhhhh
Confidence 99999998876 899999999999999999999999998 78999999999999994443 3333336777776654
Q ss_pred H
Q 003311 561 R 561 (832)
Q Consensus 561 ~ 561 (832)
.
T Consensus 431 ~ 431 (851)
T COG1205 431 H 431 (851)
T ss_pred C
Confidence 3
No 90
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=4.5e-17 Score=173.91 Aligned_cols=315 Identities=17% Similarity=0.267 Sum_probs=208.3
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHH--HH---HHHHh-cCCCCCEEEEeCCC-chHHHHHHHHhh
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL--IA---YLLEN-KGVTGPHVIVAPKA-VLPNWINEFSTW 186 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaial--i~---~l~~~-~~~~~p~LIV~P~s-ll~qW~~E~~k~ 186 (832)
++.|.|.++.--+++ +...|-...+|+|||+.-|.- +. ..... ......+||++|.. |..|-.-|..++
T Consensus 242 KPtPIqSQaWPI~LQ----G~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQ----GIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcccceeec----CcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 677788777554554 778899999999999876522 21 11111 11223468999964 555666677666
Q ss_pred C-CCc-eEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH--HHHhhcCceEEEEeCCcccCC--hhhHHHHHH
Q 003311 187 A-PSI-AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKN--HECALAKTI 260 (832)
Q Consensus 187 ~-p~~-~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~--~~L~~~~w~~vIiDEaHriKN--~~sk~~kal 260 (832)
. ... .+++|.|.. ...++ +.+. ...+++|.|+..+.+-. ..+.-....|+|+|||.+|.. ..-+..+.+
T Consensus 318 syng~ksvc~ygggn-R~eqi-e~lk---rgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkil 392 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGN-RNEQI-EDLK---RGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKIL 392 (629)
T ss_pred hhcCcceEEEecCCC-chhHH-HHHh---cCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHh
Confidence 3 334 455555543 22222 2221 67899999999886532 223333567999999999965 456788888
Q ss_pred HccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 003311 261 SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340 (832)
Q Consensus 261 ~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR 340 (832)
..+.+.+..+||....... +||
T Consensus 393 ldiRPDRqtvmTSATWP~~----------------------------------------------------------Vrr 414 (629)
T KOG0336|consen 393 LDIRPDRQTVMTSATWPEG----------------------------------------------------------VRR 414 (629)
T ss_pred hhcCCcceeeeecccCchH----------------------------------------------------------HHH
Confidence 8888877766664322111 122
Q ss_pred hHhHHhhcCCCCeEEEEEcC---CCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhH
Q 003311 341 KKDEVEKYLPGKSQVILKCD---MSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKE 417 (832)
Q Consensus 341 ~k~dv~~~LP~k~e~~v~~~---ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~ 417 (832)
+.....+ ...++++. |.. ..+-+ ++ ++
T Consensus 415 La~sY~K-----ep~~v~vGsLdL~a------------------~~sVk----Q~-------------i~---------- 444 (629)
T KOG0336|consen 415 LAQSYLK-----EPMIVYVGSLDLVA------------------VKSVK----QN-------------II---------- 444 (629)
T ss_pred HHHHhhh-----CceEEEecccceee------------------eeeee----ee-------------EE----------
Confidence 2111111 01111110 000 00000 00 00
Q ss_pred HHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 418 EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 418 ~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
+...+.|++.+..++.. ..+..|+|||+...-++|-|..-|...|+...-|||.-.+.+|+.+++.|+.+... +|
T Consensus 445 -v~~d~~k~~~~~~f~~~-ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vr---IL 519 (629)
T KOG0336|consen 445 -VTTDSEKLEIVQFFVAN-MSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVR---IL 519 (629)
T ss_pred -ecccHHHHHHHHHHHHh-cCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceE---EE
Confidence 00234466555555544 35678999999999999999999999999999999999999999999999998754 79
Q ss_pred EeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 498 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 498 lSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
++|+.+++||+++...+|+.||.|-|-..|.+|+||++|.|.+-. ...|++.+
T Consensus 520 vaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~--sis~lt~~ 572 (629)
T KOG0336|consen 520 VATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT--SISFLTRN 572 (629)
T ss_pred EEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc--eEEEEehh
Confidence 999999999999999999999999999999999999999996643 33445543
No 91
>PRK14701 reverse gyrase; Provisional
Probab=99.72 E-value=6.1e-16 Score=197.53 Aligned_cols=298 Identities=16% Similarity=0.241 Sum_probs=187.0
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-- 188 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p-- 188 (832)
|.++++.|..++..++. +.+.++..+||+|||...+.++..+.. . ...+|||+|+ .|+.|....|..++.
T Consensus 77 G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~~-~--g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLAL-K--GKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHHh-c--CCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 45799999999988886 788899999999999843332222221 1 2368999997 778889999988763
Q ss_pred --CceEEEEcCChhHHHH--HHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCCh----h-------
Q 003311 189 --SIAAVVYDGRPDERKA--MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNH----E------- 253 (832)
Q Consensus 189 --~~~v~~~~g~~~~r~~--~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~----~------- 253 (832)
++.+..++|....... ....+.. +.++|+|+|++.+......+...+++++||||||++-.. .
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~--g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~llG 227 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIEN--GDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLG 227 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhhcCC
Confidence 3456667665443322 2222221 579999999998877655444467899999999998431 1
Q ss_pred --hHHHH----HHH----------------------ccccce--EEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHH
Q 003311 254 --CALAK----TIS----------------------GYQIQR--RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEE 303 (832)
Q Consensus 254 --sk~~k----al~----------------------~l~~~~--rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~ 303 (832)
..... .+. .++... .++.|||.-.. .+.-.++
T Consensus 228 F~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~---------------- 289 (1638)
T PRK14701 228 FYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLY---------------- 289 (1638)
T ss_pred ChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHh----------------
Confidence 11110 110 111112 23456664321 0000000
Q ss_pred HhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccC
Q 003311 304 WFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTG 383 (832)
Q Consensus 304 ~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~ 383 (832)
+..+. |.+-. + ...+.......+.+.
T Consensus 290 --------------------------~~~l~-f~v~~---~-~~~lr~i~~~yi~~~----------------------- 315 (1638)
T PRK14701 290 --------------------------RELLG-FEVGS---G-RSALRNIVDVYLNPE----------------------- 315 (1638)
T ss_pred --------------------------hcCeE-EEecC---C-CCCCCCcEEEEEECC-----------------------
Confidence 00000 00000 0 000000000000000
Q ss_pred CCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhH---HHHHHHHH
Q 003311 384 TGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRL---MDILEIYL 460 (832)
Q Consensus 384 ~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~---ldiL~~~L 460 (832)
...| ..|.+++..+ |..+||||+.... ++.|..+|
T Consensus 316 --------------------------------------~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L 353 (1638)
T PRK14701 316 --------------------------------------KIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYL 353 (1638)
T ss_pred --------------------------------------HHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHH
Confidence 0002 2455555554 5689999997653 68999999
Q ss_pred HhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec----cccccccCccc-CCeEEEeCCCC---ChhhHHHHh-
Q 003311 461 KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST----RAGGLGLNLQT-ADTVIIFDSDW---NPQMDQQAE- 531 (832)
Q Consensus 461 ~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt----~agg~GLNL~~-ad~VI~~D~~w---Np~~~~QAi- 531 (832)
...|+++..+||. |...+++|..+..+ +|++| ..+++|||++. +.+|||||.|- +...+.|..
T Consensus 354 ~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~ 425 (1638)
T PRK14701 354 LEDGFKIELVSAK-----NKKGFDLFEEGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIY 425 (1638)
T ss_pred HHCCCeEEEecch-----HHHHHHHHHcCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchh
Confidence 9999999999994 89999999998876 67788 47889999998 99999999997 665555544
Q ss_pred ------------hhccccCCc
Q 003311 532 ------------DRAHRIGQK 540 (832)
Q Consensus 532 ------------gRahRiGQ~ 540 (832)
||++|-|..
T Consensus 426 ~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 426 RILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred hhhcchHHHHHhhhhcccCCc
Confidence 999999865
No 92
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.72 E-value=3.4e-16 Score=173.46 Aligned_cols=316 Identities=18% Similarity=0.188 Sum_probs=211.4
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHH-HHHHHHHHHhcCCCCCEEEEeCCCc-hHHHHHHHHhhCC--
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQT-IALIAYLLENKGVTGPHVIVAPKAV-LPNWINEFSTWAP-- 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqa-iali~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~p-- 188 (832)
.+|.|-|.-+|.. -.-++.+-++...|++|||+++ +|-|..++.. .+++|.+||+.. .+|=.++|..-+.
T Consensus 215 ~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~---g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 215 EELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPRLLSG---GKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred ceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHHHHhC---CCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 4899999988863 3345778899999999999987 5666666553 468999999854 4555677766543
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH-HhhcCceEEEEeCCcccCC--hhhH---HHHHHHc
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY-LKKVQWIYMIVDEGHRLKN--HECA---LAKTISG 262 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~-L~~~~w~~vIiDEaHriKN--~~sk---~~kal~~ 262 (832)
++.+.+-.|...-+..-.........+.||+|-||+-+---... -.--+...|||||.|.+.. .+.. +..-++.
T Consensus 289 glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~ 368 (830)
T COG1202 289 GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRY 368 (830)
T ss_pred cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHH
Confidence 34555556654333221111112225789999999976321111 1112567899999999975 2333 3333333
Q ss_pred c-ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhh
Q 003311 263 Y-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 341 (832)
Q Consensus 263 l-~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~ 341 (832)
+ .....+.||||- .|+.||..-|+.-..
T Consensus 369 l~~~AQ~i~LSATV--gNp~elA~~l~a~lV------------------------------------------------- 397 (830)
T COG1202 369 LFPGAQFIYLSATV--GNPEELAKKLGAKLV------------------------------------------------- 397 (830)
T ss_pred hCCCCeEEEEEeec--CChHHHHHHhCCeeE-------------------------------------------------
Confidence 3 557889999994 566666554321100
Q ss_pred HhHHhhcCC-CCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHH
Q 003311 342 KDEVEKYLP-GKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 420 (832)
Q Consensus 342 k~dv~~~LP-~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~ 420 (832)
+...-| |...+.+.|.=
T Consensus 398 ---~y~~RPVplErHlvf~~~----------------------------------------------------------- 415 (830)
T COG1202 398 ---LYDERPVPLERHLVFARN----------------------------------------------------------- 415 (830)
T ss_pred ---eecCCCCChhHeeeeecC-----------------------------------------------------------
Confidence 000011 12223333321
Q ss_pred hhcchHHHHHHHHHhhh----hcC--CeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCce
Q 003311 421 RASGKFELLDRLLPKLR----KSG--HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494 (832)
Q Consensus 421 ~~S~Kl~~L~~lL~~l~----~~g--~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~ 494 (832)
.+.|...+.++++.-. ..| .++|||+.+..-+..|+++|..+|++...+|++++..+|..+-..|.++...
T Consensus 416 -e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~-- 492 (830)
T COG1202 416 -ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELA-- 492 (830)
T ss_pred -chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcc--
Confidence 1223333333333221 112 4799999999999999999999999999999999999999999999998876
Q ss_pred EEEEeccccccccCcccCCeEEE----eCCCC-ChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 495 MFLLSTRAGGLGLNLQTADTVII----FDSDW-NPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 495 v~LlSt~agg~GLNL~~ad~VI~----~D~~w-Np~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
.+++|.|+|-|+|+++. .||+ +...| +|+.+.|..|||+|.|=...-.||-++-.+
T Consensus 493 -~VVTTAAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 493 -AVVTTAALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred -eEeehhhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 68999999999999864 4544 44455 999999999999999987778888887654
No 93
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=2.4e-17 Score=171.39 Aligned_cols=325 Identities=18% Similarity=0.224 Sum_probs=216.2
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc----hHHHHHHHHhhCCC
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV----LPNWINEFSTWAPS 189 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl----l~qW~~E~~k~~p~ 189 (832)
.+.|.|.+++--++. +.+-+.-.-.|+|||-..+.-+...+......--.+|+||.-- ..|-..++.++. +
T Consensus 107 kPSPiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~ 181 (459)
T KOG0326|consen 107 KPSPIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-G 181 (459)
T ss_pred CCCCccccccceeec----chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-C
Confidence 566778887766654 3333334778999997654433333333333335699999532 366788888888 4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCChh--hHHHHHHHccc-
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ- 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~~--sk~~kal~~l~- 264 (832)
+.+.+-.|....|..+... ....+++|.|+..+..-... -.-.+...+|+|||..+.... ..+.+.+..++
T Consensus 182 i~vmvttGGT~lrDDI~Rl----~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~ 257 (459)
T KOG0326|consen 182 IKVMVTTGGTSLRDDIMRL----NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPK 257 (459)
T ss_pred eEEEEecCCcccccceeee----cCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCc
Confidence 8888888887766554322 26789999999988654221 111246689999999986643 34445555553
Q ss_pred cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhH
Q 003311 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344 (832)
Q Consensus 265 ~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~d 344 (832)
.+..++.|||- .. ....|...+ +++
T Consensus 258 ~rQillySATF-P~------------------tVk~Fm~~~-----------------------------------l~k- 282 (459)
T KOG0326|consen 258 ERQILLYSATF-PL------------------TVKGFMDRH-----------------------------------LKK- 282 (459)
T ss_pred cceeeEEeccc-ch------------------hHHHHHHHh-----------------------------------ccC-
Confidence 45567778872 00 122232211 111
Q ss_pred HhhcCCCCeEEEEEcCCCHHH-HHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhc
Q 003311 345 VEKYLPGKSQVILKCDMSAWQ-KVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 423 (832)
Q Consensus 345 v~~~LP~k~e~~v~~~ms~~Q-~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S 423 (832)
..++.+.-+++..- .++|. .+..+
T Consensus 283 -------Py~INLM~eLtl~GvtQyYa------------------------------------------------fV~e~ 307 (459)
T KOG0326|consen 283 -------PYEINLMEELTLKGVTQYYA------------------------------------------------FVEER 307 (459)
T ss_pred -------cceeehhhhhhhcchhhhee------------------------------------------------eechh
Confidence 11111111111100 00010 11234
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
.|+.-|.-++.++.- ...||||+++...++|+.-+...||.+..+|..|.++.|..+..+|+.+... -|++|+..
T Consensus 308 qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~cr---nLVctDL~ 382 (459)
T KOG0326|consen 308 QKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCR---NLVCTDLF 382 (459)
T ss_pred hhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccc---eeeehhhh
Confidence 466666666666643 3689999999999999999999999999999999999999999999997654 68999999
Q ss_pred ccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 003311 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM 566 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~ 566 (832)
-+||++|+.+.||.||.|-|+..|++|+||.+|.|- .-..+.||+.. |...+-+.++++
T Consensus 383 TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGh--lGlAInLitye--drf~L~~IE~eL 441 (459)
T KOG0326|consen 383 TRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH--LGLAINLITYE--DRFNLYRIEQEL 441 (459)
T ss_pred hcccccceeeEEEecCCCCCHHHHHHHccCCccCCC--cceEEEEEehh--hhhhHHHHHHHh
Confidence 999999999999999999999999999999999994 44555677654 333455554443
No 94
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.71 E-value=6.7e-17 Score=162.07 Aligned_cols=152 Identities=27% Similarity=0.399 Sum_probs=110.2
Q ss_pred CCchHHHHHHHHHHHHhhccC---CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC
Q 003311 113 GELRAYQLEGLQWMLSLFNNN---LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~---~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 188 (832)
.+|||||.+++.-++..+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 479999999999999887655 88899999999999999988887766 79999997 889999999988876
Q ss_pred CceEEEEcCC-------------hhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH-------------HhhcCceEEE
Q 003311 189 SIAAVVYDGR-------------PDERKAMREEFFSERGRFNVLITHYDLIMRDRQY-------------LKKVQWIYMI 242 (832)
Q Consensus 189 ~~~v~~~~g~-------------~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~-------------L~~~~w~~vI 242 (832)
.......... .... ... .......++++++|+.+...... +....+++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDIS--DKS--ESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEE--HHH--HHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred hhhhhcccccccccccccccccccccc--ccc--ccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 5444322110 0000 001 11225778999999999876432 2334789999
Q ss_pred EeCCcccCChhhHHHHHHHccccceEEEeeccCC
Q 003311 243 VDEGHRLKNHECALAKTISGYQIQRRLLLTGTPI 276 (832)
Q Consensus 243 iDEaHriKN~~sk~~kal~~l~~~~rllLTGTPl 276 (832)
+||||++.+... ++.+..+...++|+|||||.
T Consensus 152 ~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 152 IDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp EETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred EehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 999999865443 45554488999999999995
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=2.5e-15 Score=174.61 Aligned_cols=95 Identities=22% Similarity=0.241 Sum_probs=76.4
Q ss_pred HHHHHHHHHhC--CCeEEEEcCCCCHHHH--HHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCC---C--
Q 003311 453 MDILEIYLKLN--DFKFLRLDGSTKTEER--GTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDW---N-- 523 (832)
Q Consensus 453 ldiL~~~L~~~--g~~~~rldG~ts~~eR--~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~w---N-- 523 (832)
.+.+++.|... +.++.++|+.++...+ ..+++.|.++..+ +|++|...+.|+|++.++.|+++|.|- .
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 46677777654 8899999999876655 8999999998776 789999999999999999998877763 2
Q ss_pred -------hhhHHHHhhhccccCCcCcEEEEEEEe
Q 003311 524 -------PQMDQQAEDRAHRIGQKKEVRVFVLVS 550 (832)
Q Consensus 524 -------p~~~~QAigRahRiGQ~k~V~V~rLit 550 (832)
.+.+.|+.||++|-+....|.|..+-.
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCC
Confidence 367899999999988766665544433
No 96
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.71 E-value=7.1e-17 Score=152.86 Aligned_cols=120 Identities=32% Similarity=0.463 Sum_probs=111.3
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
.|+..+..++.+....+.++||||.....++.+..+|...+..+..++|+++..+|..+++.|+.+.. .+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~---~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEI---VVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCC---cEEEEcChh
Confidence 68888889888877678999999999999999999999889999999999999999999999998774 478899999
Q ss_pred ccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEE
Q 003311 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
++|+|++.+++||+++++|++..+.|++||++|.||...|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998777664
No 97
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=3.4e-16 Score=166.21 Aligned_cols=312 Identities=17% Similarity=0.226 Sum_probs=194.6
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHH---hhCCC
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFS---TWAPS 189 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~---k~~p~ 189 (832)
.+...|..++--|+. +.+.|-|--...|+|||......+.......-...-.+.++|. .+..|--+-+. +|. .
T Consensus 112 kPskIQe~aLPlll~--~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ 188 (477)
T KOG0332|consen 112 KPSKIQETALPLLLA--EPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-E 188 (477)
T ss_pred CcchHHHhhcchhhc--CCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce-e
Confidence 444455555554443 3344456668899999965432222221111122235667996 45555444444 444 2
Q ss_pred ce-EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhc---CceEEEEeCCcccCChh---hHHHHHHHc
Q 003311 190 IA-AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKV---QWIYMIVDEGHRLKNHE---CALAKTISG 262 (832)
Q Consensus 190 ~~-v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~---~w~~vIiDEaHriKN~~---sk~~kal~~ 262 (832)
+. ...+.|++..|... -.-+|+|-|..++......|+-+ .....|+|||..+-+.. -........
T Consensus 189 ita~yair~sk~~rG~~--------i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~ 260 (477)
T KOG0332|consen 189 LTASYAIRGSKAKRGNK--------LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRS 260 (477)
T ss_pred eeEEEEecCcccccCCc--------chhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhh
Confidence 22 23344443332211 23469999999998876655443 56789999999987654 222333344
Q ss_pred cc-cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhh
Q 003311 263 YQ-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 341 (832)
Q Consensus 263 l~-~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~ 341 (832)
+. ....++.|||-.. ....|...+.. --.+.+|||.
T Consensus 261 lP~~~QllLFSATf~e-------------------~V~~Fa~kivp------------------------n~n~i~Lk~e 297 (477)
T KOG0332|consen 261 LPRNQQLLLFSATFVE-------------------KVAAFALKIVP------------------------NANVIILKRE 297 (477)
T ss_pred cCCcceEEeeechhHH-------------------HHHHHHHHhcC------------------------CCceeeeehh
Confidence 44 5567888888310 11112111100 0011222221
Q ss_pred HhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHh
Q 003311 342 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIR 421 (832)
Q Consensus 342 k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~ 421 (832)
++ .|++..+..+.|+ +
T Consensus 298 --el--~L~~IkQlyv~C~------------------------------------------~------------------ 313 (477)
T KOG0332|consen 298 --EL--ALDNIKQLYVLCA------------------------------------------C------------------ 313 (477)
T ss_pred --hc--cccchhhheeecc------------------------------------------c------------------
Confidence 11 1233322223222 1
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
...|+++|..+.-- ..- ...||||+....+..|...|...|+.+..++|.+...+|..++++|+.+... +|++|.
T Consensus 314 ~~~K~~~l~~lyg~-~ti-gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTn 388 (477)
T KOG0332|consen 314 RDDKYQALVNLYGL-LTI-GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK---VLITTN 388 (477)
T ss_pred hhhHHHHHHHHHhh-hhh-hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce---EEEEec
Confidence 23466777764332 222 3689999999999999999999999999999999999999999999999877 799999
Q ss_pred ccccccCcccCCeEEEeCCCC------ChhhHHHHhhhccccCCcCcEEEEEEEe
Q 003311 502 AGGLGLNLQTADTVIIFDSDW------NPQMDQQAEDRAHRIGQKKEVRVFVLVS 550 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~w------Np~~~~QAigRahRiGQ~k~V~V~rLit 550 (832)
+..+||+.+.++.||.||.|- .|..|++|+||++|.|.+- + ++.|+-
T Consensus 389 V~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG-~-a~n~v~ 441 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG-L-AINLVD 441 (477)
T ss_pred hhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc-e-EEEeec
Confidence 999999999999999999984 7889999999999999543 3 333554
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.70 E-value=3.7e-14 Score=149.65 Aligned_cols=315 Identities=19% Similarity=0.189 Sum_probs=210.7
Q ss_pred CCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC
Q 003311 110 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 188 (832)
Q Consensus 110 l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 188 (832)
..+|+|.|+|..+-+.+++.+.+....|+..-+|.|||-+....|.+.+..+ +.+.|..|. .++-.-...++.-|+
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G---~~vciASPRvDVclEl~~Rlk~aF~ 169 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG---GRVCIASPRVDVCLELYPRLKQAFS 169 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC---CeEEEecCcccchHHHHHHHHHhhc
Confidence 3468999999999999999999999999999999999999888888777764 578999994 778788888888888
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccC-ChhhHHHHHHHc-c-cc
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLK-NHECALAKTISG-Y-QI 265 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriK-N~~sk~~kal~~-l-~~ 265 (832)
+..+.+.+|.....- ...-||-||++.+ +.. ..||++||||+.-+- ..+-.+..+++. . ..
T Consensus 170 ~~~I~~Lyg~S~~~f----------r~plvVaTtHQLl-rFk-----~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 170 NCDIDLLYGDSDSYF----------RAPLVVATTHQLL-RFK-----QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred cCCeeeEecCCchhc----------cccEEEEehHHHH-HHH-----hhccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 777777777654321 1222555555554 322 258999999999872 122234444432 2 34
Q ss_pred ceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhh-hhhhhHhH
Q 003311 266 QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPF-ILRRKKDE 344 (832)
Q Consensus 266 ~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pf-llRR~k~d 344 (832)
..++.|||||-.. | .+.. ++.-+.+. +-+|...
T Consensus 234 g~~IylTATp~k~----l------------------~r~~-----------------------~~g~~~~~klp~RfH~- 267 (441)
T COG4098 234 GATIYLTATPTKK----L------------------ERKI-----------------------LKGNLRILKLPARFHG- 267 (441)
T ss_pred CceEEEecCChHH----H------------------HHHh-----------------------hhCCeeEeecchhhcC-
Confidence 5789999999311 1 0000 00001000 0011100
Q ss_pred HhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcc
Q 003311 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 424 (832)
Q Consensus 345 v~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~ 424 (832)
..||-. ..+++.. +.+.+ .-.
T Consensus 268 --~pLpvP--kf~w~~~----------------------------~~k~l---------------------------~r~ 288 (441)
T COG4098 268 --KPLPVP--KFVWIGN----------------------------WNKKL---------------------------QRN 288 (441)
T ss_pred --CCCCCC--ceEEecc----------------------------HHHHh---------------------------hhc
Confidence 112211 1222210 00000 112
Q ss_pred hHH-HHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHh-C-CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 425 KFE-LLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL-N-DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 425 Kl~-~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~-~-g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
|+. .|.++|++...+|..+|||.....+++.+...|+. . ......++... ..|.+.+.+|++|... +|++|.
T Consensus 289 kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~---lLiTTT 363 (441)
T COG4098 289 KLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKIT---LLITTT 363 (441)
T ss_pred cCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceE---EEEEee
Confidence 222 57788888889999999999999999999999843 2 22334444433 3699999999998765 899999
Q ss_pred ccccccCcccCCeEEEeCCC--CChhhHHHHhhhccccCCcCcEEEEEEEeCCC
Q 003311 502 AGGLGLNLQTADTVIIFDSD--WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 553 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~--wNp~~~~QAigRahRiGQ~k~V~V~rLit~~s 553 (832)
.+.+|+..+..|++|+-.-. ++-+..+|.-||++|--..-.-.|+.|..--|
T Consensus 364 ILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 364 ILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred hhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 99999999999999986555 88999999999999965444455555554443
No 99
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.69 E-value=1.4e-15 Score=184.55 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=92.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEE
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 516 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~---~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI 516 (832)
+..+|||+.....++.+...|.. .++.++.+||+++.++|..+++.|..+... +|+||..+..||+++.+++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rk---VlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRK---VVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeE---EEEecchHhhcccccCceEEE
Confidence 56899999999999999998876 489999999999999999999999876543 799999999999999999999
Q ss_pred EeCCC----CChhh--------------HHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 517 IFDSD----WNPQM--------------DQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 517 ~~D~~----wNp~~--------------~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
.++.+ +||.. +.||.|||+|. ++-.+|+|+++.
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 99875 45554 78999999997 577889998764
No 100
>PRK09694 helicase Cas3; Provisional
Probab=99.68 E-value=1.2e-14 Score=176.50 Aligned_cols=336 Identities=17% Similarity=0.150 Sum_probs=190.6
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHh----h
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFST----W 186 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k----~ 186 (832)
+..++|+|..+..- ..++...||-++||.|||-.++.++..+....+ ...+++..|. .+..+-...+.. .
T Consensus 284 ~~~p~p~Q~~~~~~----~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 284 GYQPRQLQTLVDAL----PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-ADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCCChHHHHHHHhh----ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-CCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 56899999976432 123455689999999999999988887776433 4578999996 455666666554 3
Q ss_pred CCCceEEEEcCChhHHHHH-------------------HHHHHhhc-C---CccEEecCHHHHHHhH-----HHHh--hc
Q 003311 187 APSIAAVVYDGRPDERKAM-------------------REEFFSER-G---RFNVLITHYDLIMRDR-----QYLK--KV 236 (832)
Q Consensus 187 ~p~~~v~~~~g~~~~r~~~-------------------~~~~~~~~-~---~~dVvItTye~l~~d~-----~~L~--~~ 236 (832)
++...+.+.+|........ ...++... . -.+|+|+|.+.+.... ..+. ..
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 4555677777654311110 01233210 1 1579999998876321 1111 12
Q ss_pred CceEEEEeCCcccCChhhH-HHHHHHcc--ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccC
Q 003311 237 QWIYMIVDEGHRLKNHECA-LAKTISGY--QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRG 313 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~~sk-~~kal~~l--~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~ 313 (832)
.-.+|||||+|-+=..... +...+..+ .....++||||+-..-..+|...+..-.+ +. .... | |.
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~-~~-~~~~----Y--Pl---- 506 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDP-VE-LSSA----Y--PL---- 506 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccc-cc-cccc----c--cc----
Confidence 2348999999998433332 23333332 23568999999843322333221100000 00 0000 0 00
Q ss_pred cccCChHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHH
Q 003311 314 QVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNL 393 (832)
Q Consensus 314 ~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~ 393 (832)
.+... .. ...++-++.. ...+|... .+.+..
T Consensus 507 ---vt~~~------~~--~~~~~~~~~~----~~~~~~~~--~v~v~~-------------------------------- 537 (878)
T PRK09694 507 ---ITWRG------VN--GAQRFDLSAH----PEQLPARF--TIQLEP-------------------------------- 537 (878)
T ss_pred ---ccccc------cc--cceeeecccc----ccccCcce--EEEEEe--------------------------------
Confidence 00000 00 0000000000 00001000 000000
Q ss_pred HHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCC---CeEEEE
Q 003311 394 SMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLND---FKFLRL 470 (832)
Q Consensus 394 ~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g---~~~~rl 470 (832)
... . .......++..++.. ...|+++||||+.+..+..+...|...+ +++..+
T Consensus 538 -----------~~~-~-----------~~~~~~~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~ll 593 (878)
T PRK09694 538 -----------ICL-A-----------DMLPDLTLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLF 593 (878)
T ss_pred -----------ecc-c-----------cccCHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEE
Confidence 000 0 001111233333333 3468899999999999999999998654 689999
Q ss_pred cCCCCHHHH----HHHHHhh-cCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCc
Q 003311 471 DGSTKTEER----GTLLKQF-NAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQK 540 (832)
Q Consensus 471 dG~ts~~eR----~~~i~~F-n~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~ 540 (832)
||.++..+| .++++.| +.+..+...+||+|.+...|||+ .+|.+|....| ...++||+||+||.|.+
T Consensus 594 Hsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 594 HARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 999999999 5678899 44332223579999999999999 57988886665 56899999999999874
No 101
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.68 E-value=1.1e-15 Score=184.97 Aligned_cols=312 Identities=17% Similarity=0.190 Sum_probs=222.9
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 191 (832)
...||-|.++|+-.+. +...++-..+|.||++.--.- ..-..|-+|||.|+ ||+......+... ++.
T Consensus 263 ~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlP------A~l~~gitvVISPL~SLm~DQv~~L~~~--~I~ 330 (941)
T KOG0351|consen 263 KGFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLP------ALLLGGVTVVISPLISLMQDQVTHLSKK--GIP 330 (941)
T ss_pred ccCChhHHHHHHHHHc----CCceEEEeecCCceeeEeecc------ccccCCceEEeccHHHHHHHHHHhhhhc--Ccc
Confidence 5899999999986665 888999999999999764110 01123578999996 7776666666333 344
Q ss_pred EEEEcC--ChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHH---hh-cC---ceEEEEeCCcccCChh-------hH
Q 003311 192 AVVYDG--RPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL---KK-VQ---WIYMIVDEGHRLKNHE-------CA 255 (832)
Q Consensus 192 v~~~~g--~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L---~~-~~---w~~vIiDEaHriKN~~-------sk 255 (832)
.....+ +..++....+.+......++++..|+|.+......+ .. .. ..++||||||.+..+. .+
T Consensus 331 a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~ 410 (941)
T KOG0351|consen 331 ACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKR 410 (941)
T ss_pred eeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHH
Confidence 444444 333444555555554447899999999997653322 11 12 5789999999986533 23
Q ss_pred HHHHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhh
Q 003311 256 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 335 (832)
Q Consensus 256 ~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~p 335 (832)
+.....++.....|+||||--..--.++...|+.-.|.+|.+. |+.+
T Consensus 411 l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------fnR~--------------------------- 457 (941)
T KOG0351|consen 411 LGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------FNRP--------------------------- 457 (941)
T ss_pred HHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc------CCCC---------------------------
Confidence 4444466677788999999888888888888888777654432 2211
Q ss_pred hhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchh
Q 003311 336 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 415 (832)
Q Consensus 336 fllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~ 415 (832)
...+-|.-..+ ...+..+..
T Consensus 458 ----------------NL~yeV~~k~~------------------------~~~~~~~~~-------------------- 477 (941)
T KOG0351|consen 458 ----------------NLKYEVSPKTD------------------------KDALLDILE-------------------- 477 (941)
T ss_pred ----------------CceEEEEeccC------------------------ccchHHHHH--------------------
Confidence 11111111110 000111111
Q ss_pred hHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceE
Q 003311 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 495 (832)
Q Consensus 416 ~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v 495 (832)
.+ +....+...||||.....++.+...|...|+....+|++++..+|+.+...|..+...
T Consensus 478 ----------------~~-~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~--- 537 (941)
T KOG0351|consen 478 ----------------ES-KLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIR--- 537 (941)
T ss_pred ----------------Hh-hhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCe---
Confidence 11 1123467899999999999999999999999999999999999999999999987744
Q ss_pred EEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEE
Q 003311 496 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLV 549 (832)
Q Consensus 496 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLi 549 (832)
++++|-|.|.|||-+++..||+|..|-+..-|.|..|||+|-|+...+..|+=.
T Consensus 538 VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 538 VIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY 591 (941)
T ss_pred EEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecch
Confidence 799999999999999999999999999999999999999999999886665433
No 102
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=5.2e-16 Score=173.81 Aligned_cols=315 Identities=20% Similarity=0.257 Sum_probs=203.9
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHH-HHHHHHhc----CCCCCEEEEeCC-CchHHHHHHHHhhC
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLENK----GVTGPHVIVAPK-AVLPNWINEFSTWA 187 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaial-i~~l~~~~----~~~~p~LIV~P~-sll~qW~~E~~k~~ 187 (832)
.+.|-|..++-.++. +.+++-|.++|.|||+.-+.- +..|.... ...-..+|+.|. .++.|-..|+.++.
T Consensus 158 ~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 678899999988886 888899999999999886543 44444433 233367999996 78888999999987
Q ss_pred --CC--ceEEEEcCC--hhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH----HhhcCceEEEEeCCcccCChhh---
Q 003311 188 --PS--IAAVVYDGR--PDERKAMREEFFSERGRFNVLITHYDLIMRDRQY----LKKVQWIYMIVDEGHRLKNHEC--- 254 (832)
Q Consensus 188 --p~--~~v~~~~g~--~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~----L~~~~w~~vIiDEaHriKN~~s--- 254 (832)
+. ..+..+... +..+.. ... ...++++|.|+..+...... +.-....++|+|||.++.++..
T Consensus 234 ~~~~t~~~a~~~~~~~~~~qk~a----~~~-~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~ 308 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQKPA----FLS-DEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVE 308 (593)
T ss_pred CCCCCchhhhhcccccchhhccc----hhH-HHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHH
Confidence 43 222222222 111111 111 15788999999988765432 2222345699999999988721
Q ss_pred HHHHHHHcccc--ceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhh
Q 003311 255 ALAKTISGYQI--QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332 (832)
Q Consensus 255 k~~kal~~l~~--~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~ 332 (832)
++...+....+ -++=++|||- + ....+| ..+
T Consensus 309 Qla~I~sac~s~~i~~a~FSat~----------------~------~~VEE~-------------------------~~~ 341 (593)
T KOG0344|consen 309 QLADIYSACQSPDIRVALFSATI----------------S------VYVEEW-------------------------AEL 341 (593)
T ss_pred HHHHHHHHhcCcchhhhhhhccc----------------c------HHHHHH-------------------------HHH
Confidence 22222222211 1112222221 0 001111 111
Q ss_pred hhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCcccccccc
Q 003311 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN 412 (832)
Q Consensus 333 L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~ 412 (832)
+..+. . .+.+...+.+ ...+...| +|.+
T Consensus 342 i~~~~---------------~--~vivg~~~sa------------------------~~~V~Qel--------vF~g--- 369 (593)
T KOG0344|consen 342 IKSDL---------------K--RVIVGLRNSA------------------------NETVDQEL--------VFCG--- 369 (593)
T ss_pred hhccc---------------e--eEEEecchhH------------------------hhhhhhhh--------eeee---
Confidence 10000 0 1111111111 00010111 1111
Q ss_pred chhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHH-HhCCCeEEEEcCCCCHHHHHHHHHhhcCCCC
Q 003311 413 MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL-KLNDFKFLRLDGSTKTEERGTLLKQFNAPDS 491 (832)
Q Consensus 413 ~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L-~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~ 491 (832)
..-+|+.++..++....+ -.+|||.|...-+..|-..| .+.++.+..+||.-++.+|.+.+++|+.+..
T Consensus 370 --------se~~K~lA~rq~v~~g~~--PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~I 439 (593)
T KOG0344|consen 370 --------SEKGKLLALRQLVASGFK--PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKI 439 (593)
T ss_pred --------cchhHHHHHHHHHhccCC--CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCe
Confidence 234677778888777644 47999999999999998889 7889999999999999999999999999875
Q ss_pred CceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeC
Q 003311 492 PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551 (832)
Q Consensus 492 ~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~ 551 (832)
- +|++|...++||++.+++.||+||.|-.-..|++++||.+|.|+.- +.|.|.+.
T Consensus 440 w---vLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g--~Aitfytd 494 (593)
T KOG0344|consen 440 W---VLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSG--KAITFYTD 494 (593)
T ss_pred e---EEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCc--ceEEEecc
Confidence 3 6999999999999999999999999999999999999999999764 44455554
No 103
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.66 E-value=3.9e-15 Score=176.32 Aligned_cols=317 Identities=19% Similarity=0.267 Sum_probs=205.8
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHH-HHHHHHHHhcC---CCCCE-EEEeCC-CchHHHHHHHHhh
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENKG---VTGPH-VIVAPK-AVLPNWINEFSTW 186 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqai-ali~~l~~~~~---~~~p~-LIV~P~-sll~qW~~E~~k~ 186 (832)
..++|.|.+++-.+.+ +...|-...+|+|||+..+ -.+.+...+.. ..||+ ||+||. .+..|-.+++.+|
T Consensus 386 ~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf 461 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKF 461 (997)
T ss_pred CCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 5889999999987776 8888999999999999874 33434333321 23564 899997 5666644444444
Q ss_pred C--CCceE-EEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH----HHH-hhcCceEEEEeCCcccCC--hhhHH
Q 003311 187 A--PSIAA-VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR----QYL-KKVQWIYMIVDEGHRLKN--HECAL 256 (832)
Q Consensus 187 ~--p~~~v-~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~----~~L-~~~~w~~vIiDEaHriKN--~~sk~ 256 (832)
. -++.+ .+|.|..... .+ ..+. ....|+|+|...++.-. ..+ .-.+..++|+|||.|+-. ..-+.
T Consensus 462 ~k~l~ir~v~vygg~~~~~-qi-aelk---Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~ 536 (997)
T KOG0334|consen 462 LKLLGIRVVCVYGGSGISQ-QI-AELK---RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQI 536 (997)
T ss_pred HhhcCceEEEecCCccHHH-HH-HHHh---cCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCccc
Confidence 3 24444 4555544332 22 2222 23779999987765431 112 223466899999999832 11122
Q ss_pred HHHHHccccceE-EEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhh
Q 003311 257 AKTISGYQIQRR-LLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 335 (832)
Q Consensus 257 ~kal~~l~~~~r-llLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~p 335 (832)
+..+..+.+.+- ++.||| | |
T Consensus 537 ~~Ii~nlrpdrQtvlfSat------------------------------f-----------------------------p 557 (997)
T KOG0334|consen 537 TRILQNLRPDRQTVLFSAT------------------------------F-----------------------------P 557 (997)
T ss_pred chHHhhcchhhhhhhhhhh------------------------------h-----------------------------h
Confidence 223333322211 111221 0 0
Q ss_pred hhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchh
Q 003311 336 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 415 (832)
Q Consensus 336 fllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~ 415 (832)
-.+..+...|.. +|-- +++- |+.+.... ..+.-.+|.
T Consensus 558 r~m~~la~~vl~-~Pve--iiv~----------~~svV~k~-----------------V~q~v~V~~------------- 594 (997)
T KOG0334|consen 558 RSMEALARKVLK-KPVE--IIVG----------GRSVVCKE-----------------VTQVVRVCA------------- 594 (997)
T ss_pred HHHHHHHHHhhc-CCee--EEEc----------cceeEecc-----------------ceEEEEEec-------------
Confidence 111222233333 2211 1111 00000000 000011110
Q ss_pred hHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceE
Q 003311 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 495 (832)
Q Consensus 416 ~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v 495 (832)
..+.|+..|.++|..... ..++||||+....+|.|..-|...|+.+..|||..+..+|...+.+|+++...
T Consensus 595 -----~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~--- 665 (997)
T KOG0334|consen 595 -----IENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVN--- 665 (997)
T ss_pred -----CchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCce---
Confidence 135688889999988766 66999999999999999999999999999999999999999999999987654
Q ss_pred EEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeC
Q 003311 496 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551 (832)
Q Consensus 496 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~ 551 (832)
+|+.|..+..||+......||+||.+--...|.+|.||++|.|.+- ..|.|++.
T Consensus 666 LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 666 LLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred EEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 8999999999999999999999999999999999999999999777 66777776
No 104
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.66 E-value=4.6e-15 Score=180.30 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=92.3
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeE
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 515 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~---~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~V 515 (832)
.+..+|||+.....++.+...|.. .++.++.++|+++.++|..++..|..+..+ +|+||..+..||++..+++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rk---VlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRK---VVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeE---EEEecchHHhcccccCceEE
Confidence 357899999999999999999976 588999999999999999999999876543 79999999999999999999
Q ss_pred EEeCCC----CCh--------------hhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 516 IIFDSD----WNP--------------QMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 516 I~~D~~----wNp--------------~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
|.++.+ ++| ..+.||.||++|. .+-.+|+|+++.
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~ 339 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKE 339 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHH
Confidence 997655 333 3588999999886 478899998864
No 105
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.65 E-value=7.2e-15 Score=158.92 Aligned_cols=309 Identities=20% Similarity=0.246 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHH-HHHHHHHHhcCC----CC-CEEEEeCC-CchHHHHHHHHhh---C
Q 003311 118 YQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENKGV----TG-PHVIVAPK-AVLPNWINEFSTW---A 187 (832)
Q Consensus 118 yQ~egl~wml~~~~~~~~gILaDemGlGKTiqai-ali~~l~~~~~~----~~-p~LIV~P~-sll~qW~~E~~k~---~ 187 (832)
.|..++-.++. +.+.+--.-||+|||...+ -++..++..+.. .+ ..+|+||. .+..|-...+++. |
T Consensus 45 IQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c 120 (569)
T KOG0346|consen 45 IQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYC 120 (569)
T ss_pred hhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHH
Confidence 57778877775 7777777999999999854 555555554322 22 45899996 5667766766654 4
Q ss_pred C-CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH---HhhcCceEEEEeCCcccCChh--hHHHHHHH
Q 003311 188 P-SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKNHE--CALAKTIS 261 (832)
Q Consensus 188 p-~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~---L~~~~w~~vIiDEaHriKN~~--sk~~kal~ 261 (832)
+ .++++-...+...-. . ..+.. ..++|||+|+..+.+.... .......++|+|||.-+-..+ -.+.+...
T Consensus 121 ~k~lr~~nl~s~~sdsv-~-~~~L~--d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~ 196 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDSV-N-SVALM--DLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRS 196 (569)
T ss_pred HHhhhhhhhhcccchHH-H-HHHHc--cCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHH
Confidence 4 344443332222111 1 12222 6889999999998776432 222346789999999886543 23444445
Q ss_pred ccccc-eEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhh--hhhhh
Q 003311 262 GYQIQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVI--RPFIL 338 (832)
Q Consensus 262 ~l~~~-~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L--~pfll 338 (832)
.++.. ..++||||-- .+ +..|.+++ .|++|
T Consensus 197 ~LPr~~Q~~LmSATl~-dD----------------------------------------------v~~LKkL~l~nPviL 229 (569)
T KOG0346|consen 197 HLPRIYQCFLMSATLS-DD----------------------------------------------VQALKKLFLHNPVIL 229 (569)
T ss_pred hCCchhhheeehhhhh-hH----------------------------------------------HHHHHHHhccCCeEE
Confidence 55433 3478888841 11 12222222 34443
Q ss_pred hhhHhHHhhcCC--C-CeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchh
Q 003311 339 RRKKDEVEKYLP--G-KSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 415 (832)
Q Consensus 339 RR~k~dv~~~LP--~-k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~ 415 (832)
.-+- .++| . ...+.+.|. +
T Consensus 230 kl~e----~el~~~dqL~Qy~v~cs--e---------------------------------------------------- 251 (569)
T KOG0346|consen 230 KLTE----GELPNPDQLTQYQVKCS--E---------------------------------------------------- 251 (569)
T ss_pred Eecc----ccCCCcccceEEEEEec--c----------------------------------------------------
Confidence 2221 1233 1 123344443 1
Q ss_pred hHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceE
Q 003311 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 495 (832)
Q Consensus 416 ~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v 495 (832)
..|+..+..+|+ +.--..|.|||.+..+..-.|.-+|..-|++.|.++|.++...|.-+|++||.+-.+
T Consensus 252 -------~DKflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Yd--- 320 (569)
T KOG0346|consen 252 -------EDKFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYD--- 320 (569)
T ss_pred -------chhHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCccee---
Confidence 113333333332 111234899999999999999999999999999999999999999999999997654
Q ss_pred EEEecc--------------------------c---------cccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCc
Q 003311 496 FLLSTR--------------------------A---------GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQK 540 (832)
Q Consensus 496 ~LlSt~--------------------------a---------gg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~ 540 (832)
++|+|+ + .++|||++.+++||.||.|-++..|++|+||..|-|.+
T Consensus 321 ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~ 400 (569)
T KOG0346|consen 321 IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNK 400 (569)
T ss_pred EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCC
Confidence 566666 1 24799999999999999999999999999999998755
Q ss_pred CcEEEEEEEeCC
Q 003311 541 KEVRVFVLVSVG 552 (832)
Q Consensus 541 k~V~V~rLit~~ 552 (832)
- .+.-||...
T Consensus 401 G--talSfv~P~ 410 (569)
T KOG0346|consen 401 G--TALSFVSPK 410 (569)
T ss_pred C--ceEEEecch
Confidence 4 445556543
No 106
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=3.5e-14 Score=169.46 Aligned_cols=393 Identities=17% Similarity=0.201 Sum_probs=226.5
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCch-H---HHHHHHHhhC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-P---NWINEFSTWA 187 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll-~---qW~~E~~k~~ 187 (832)
|-..++-|+-|---| +.|-|.-..||.|||+++...+...... ...++||+|+.-| . +|...+.+++
T Consensus 80 g~~~ydvQliGg~~L------h~G~Iaem~TGeGKTL~a~Lpa~~~al~---G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 80 GLRHFDVQLIGGMVL------HEGNIAEMRTGEGKTLVATLPAYLNAIS---GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred CCCcchHHHhhhhhh------ccCccccccCCCCchHHHHHHHHHHHhc---CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 456777788776433 3455888999999999875444322222 2358999998554 3 3777777776
Q ss_pred CCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHH----HHhHHHH-----hhcCceEEEEeCCcccCChhhHHHH
Q 003311 188 PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI----MRDRQYL-----KKVQWIYMIVDEGHRLKNHECALAK 258 (832)
Q Consensus 188 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l----~~d~~~L-----~~~~w~~vIiDEaHriKN~~sk~~k 258 (832)
++.+.+..|......... . -.++|+++|...+ .++.-.+ ....+.++|||||+++-=.
T Consensus 151 -GLtv~~i~gg~~~~~r~~-~-----y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLID------ 217 (896)
T PRK13104 151 -GLTVGVIYPDMSHKEKQE-A-----YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILID------ 217 (896)
T ss_pred -CceEEEEeCCCCHHHHHH-H-----hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhh------
Confidence 466666655433222111 1 3578999998876 2222111 1236889999999987422
Q ss_pred HHHccccceEEEeeccCCCCCHHHHHHHHhc----cCCCCCCChHHHHHHhcccccccCcccCChHHHHHH---------
Q 003311 259 TISGYQIQRRLLLTGTPIQNSLQELWSLLNF----LLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLI--------- 325 (832)
Q Consensus 259 al~~l~~~~rllLTGTPlqN~l~EL~sLl~f----L~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~--------- 325 (832)
.+..-|++||.+-. . .++|..++- |.++.-... ...|... .....+.+++.....+
T Consensus 218 -----eArtPLIISg~~~~-~-~~~y~~~~~~v~~l~~~~~~~~---~~dy~id-ek~~~v~Lte~G~~~~e~~~~~~~i 286 (896)
T PRK13104 218 -----EARTPLIISGAAED-S-SELYIKINSLIPQLKKQEEEGD---EGDYTID-EKQKQAHLTDAGHLHIEELLTKAKL 286 (896)
T ss_pred -----ccCCceeeeCCCcc-c-hHHHHHHHHHHHHHHhccccCC---CCCEEEE-cCCCceEEchHHHHHHHHHHHhCCc
Confidence 23345788886532 2 345544432 222200000 0000000 0111233333322111
Q ss_pred ---------------HHHHHhhhhhh-hhhhhHhHHhhcCCCCeEEEEEcCCC-------HHHHHHHHHHHHhccccccc
Q 003311 326 ---------------IRRLHHVIRPF-ILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGLDT 382 (832)
Q Consensus 326 ---------------~~~L~~~L~pf-llRR~k~dv~~~LP~k~e~~v~~~ms-------~~Q~~lY~~i~~~~~~~~~~ 382 (832)
.+.+...|+-. ++.| ++. ++-...++++.-+.| .++.-+-+.+..+....+..
T Consensus 287 l~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~---d~d-YiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~ 362 (896)
T PRK13104 287 LDPGESLYHASNIMLMHHVNAALKAHAMFHR---DID-YIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQN 362 (896)
T ss_pred cCCcccccCchhhhHHHHHHHHHHHHHHhcC---CCc-eEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCC
Confidence 11111112111 1111 110 000011111111222 13333444444443333322
Q ss_pred CC--CcchhHHHHHH-----------------HHHHhhCCCccccccccchh-----hHHHHhhcchHHHHHHHHHhhhh
Q 003311 383 GT--GKSKSLQNLSM-----------------QLRKCCNHPYLFVGEYNMWR-----KEEIIRASGKFELLDRLLPKLRK 438 (832)
Q Consensus 383 ~~--~~~~~l~~~~~-----------------~LRk~cnhP~l~~~~~~~~~-----~~~l~~~S~Kl~~L~~lL~~l~~ 438 (832)
.. -..-.++|++. .+.++.+-+.+..+...+.. +.-......|+.++.+.+..+.+
T Consensus 363 e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~ 442 (896)
T PRK13104 363 ENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGV 442 (896)
T ss_pred CceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHh
Confidence 11 11223334332 34444443333322211110 00112345689999999999999
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccC------
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTA------ 512 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~a------ 512 (832)
.|..|||||.+....+.|..+|...|+++..|+|.....+|..+.+.|+.+. ++|+|..+|+|+|+.-.
T Consensus 443 ~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~-----VtIATNmAGRGtDI~Lggn~~~~ 517 (896)
T PRK13104 443 RKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA-----VTIATNMAGRGTDIVLGGSLAAD 517 (896)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc-----EEEeccCccCCcceecCCchhhh
Confidence 9999999999999999999999999999999999999999999999999863 79999999999996522
Q ss_pred --------------------------------CeEEEeCCCCChhhHHHHhhhccccCCcCcEEEE
Q 003311 513 --------------------------------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 513 --------------------------------d~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
=+||.-+..-|-..+.|..||++|.|..-..+.|
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~ 583 (896)
T PRK13104 518 LANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY 583 (896)
T ss_pred hhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE
Confidence 3788889999999999999999999987665544
No 107
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=9.6e-14 Score=165.00 Aligned_cols=392 Identities=14% Similarity=0.181 Sum_probs=218.6
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHH----HHHHHHhhC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN----WINEFSTWA 187 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~q----W~~E~~k~~ 187 (832)
|..+++-|+-|.--| +.|.|.-..||.|||++|...+...... ...+-||+|+..|.. |...+-+++
T Consensus 78 g~~~~dvQlig~l~l------~~G~iaEm~TGEGKTLvA~l~a~l~al~---G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 78 GLRPFDVQIIGGIVL------HEGNIAEMKTGEGKTLTATLPVYLNALT---GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCCchhHHHHHHHH------hcCCcccccCCCCCcHHHHHHHHHHHHc---CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 567888898886533 2344778999999999975444333333 246788899876643 666666666
Q ss_pred CCceEEEEcCC--hhHHHHHHHHHHhhcCCccEEecCHH-----HHHHh----HHHHhhcCceEEEEeCCcccCChhhHH
Q 003311 188 PSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITHYD-----LIMRD----RQYLKKVQWIYMIVDEGHRLKNHECAL 256 (832)
Q Consensus 188 p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~dVvItTye-----~l~~d----~~~L~~~~w~~vIiDEaHriKN~~sk~ 256 (832)
++.|.+..|. +..|+.. -..||+.+|-. +++.. ...+....++++||||+..+.=.
T Consensus 149 -Gl~vg~i~~~~~~~~r~~~--------y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiD---- 215 (796)
T PRK12906 149 -GLTVGLNLNSMSPDEKRAA--------YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILID---- 215 (796)
T ss_pred -CCeEEEeCCCCCHHHHHHH--------hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeec----
Confidence 5777777664 3333222 35677777743 33332 22233347889999999876321
Q ss_pred HHHHHccccceEEEeeccCCCCCHHHHHHHHhc----cCCCCC--CChHHHHHHhcccccccCcccCChHHHHHH-----
Q 003311 257 AKTISGYQIQRRLLLTGTPIQNSLQELWSLLNF----LLPTIF--NSVENFEEWFNAPFKDRGQVALTDEEQLLI----- 325 (832)
Q Consensus 257 ~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~f----L~p~~f--~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~----- 325 (832)
.+..-+++||.+- ...++|..++- |.+... +........|... .....+.+++.....+
T Consensus 216 -------eartPLiisg~~~--~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id-~~~k~v~lte~G~~~~e~~~~ 285 (796)
T PRK12906 216 -------EARTPLIISGQAE--KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKID-EKTKTISLTEQGIRKAEKLFG 285 (796)
T ss_pred -------cCCCceecCCCCC--cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEE-cccCceeecHHHHHHHHHHcC
Confidence 2233466777652 22344443322 222110 0000000001000 0011222232211111
Q ss_pred ------------HHHHHhhhhh-hhhhhhHhHHhhcCCCCeEEEEEc------CCCHHHHHHHHHHHHhcccccccCCC-
Q 003311 326 ------------IRRLHHVIRP-FILRRKKDEVEKYLPGKSQVILKC------DMSAWQKVYYQQVTDVGRVGLDTGTG- 385 (832)
Q Consensus 326 ------------~~~L~~~L~p-fllRR~k~dv~~~LP~k~e~~v~~------~ms~~Q~~lY~~i~~~~~~~~~~~~~- 385 (832)
.+.+...|+- +++.+ ++.--+.+....+|.- +=..++.-+-+.+..+....+.....
T Consensus 286 i~~l~~~~~~~~~~~i~~Al~A~~l~~~---d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t 362 (796)
T PRK12906 286 LDNLYDSENTALAHHIDQALRANYIMLK---DIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQT 362 (796)
T ss_pred CccccCchhhhHHHHHHHHHHHHHHHhc---CCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCcee
Confidence 1111111111 11111 1110011111111110 11123333344443332222221110
Q ss_pred -cchhHHHH-----------------HHHHHHhhCCCccccccccchhh----HH-HHhhcchHHHHHHHHHhhhhcCCe
Q 003311 386 -KSKSLQNL-----------------SMQLRKCCNHPYLFVGEYNMWRK----EE-IIRASGKFELLDRLLPKLRKSGHR 442 (832)
Q Consensus 386 -~~~~l~~~-----------------~~~LRk~cnhP~l~~~~~~~~~~----~~-l~~~S~Kl~~L~~lL~~l~~~g~k 442 (832)
..-+++++ ...++++.+-+.+..+...+... +. ......|+.+|.+.+......|.+
T Consensus 363 ~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~p 442 (796)
T PRK12906 363 LATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQP 442 (796)
T ss_pred eeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCC
Confidence 11112222 22455555555444332221110 00 112345889999999888889999
Q ss_pred EEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcc---cCC-----e
Q 003311 443 VLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ---TAD-----T 514 (832)
Q Consensus 443 vLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~---~ad-----~ 514 (832)
|||||.+....+.|...|...|+++..++|.....++.-+...++.+. ++|+|..+|+|+|+. .+. +
T Consensus 443 vLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~-----VtIATnmAGRGtDI~l~~~V~~~GGLh 517 (796)
T PRK12906 443 VLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA-----VTIATNMAGRGTDIKLGPGVKELGGLA 517 (796)
T ss_pred EEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce-----EEEEeccccCCCCCCCCcchhhhCCcE
Confidence 999999999999999999999999999999988666666666665533 799999999999995 567 9
Q ss_pred EEEeCCCCChhhHHHHhhhccccCCcCcE
Q 003311 515 VIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543 (832)
Q Consensus 515 VI~~D~~wNp~~~~QAigRahRiGQ~k~V 543 (832)
||.++.|-|+..+.|+.||++|.|..-..
T Consensus 518 VI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 518 VIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred EEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 99999999999999999999999977664
No 108
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.60 E-value=2.8e-13 Score=143.60 Aligned_cols=316 Identities=14% Similarity=0.172 Sum_probs=227.0
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 191 (832)
.+.||.|+.+++.... +...+|..++|-||++..-.- .|. ..|-.|||||+ +++....-.+....-+..
T Consensus 93 ekfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlp--al~----adg~alvi~plislmedqil~lkqlgi~as 162 (695)
T KOG0353|consen 93 EKFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLP--ALC----ADGFALVICPLISLMEDQILQLKQLGIDAS 162 (695)
T ss_pred HhcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhh--HHh----cCCceEeechhHHHHHHHHHHHHHhCcchh
Confidence 3789999999998776 888999999999999753111 111 24678999996 788877778887765555
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHH-------hhcCceEEEEeCCcccCC------hhhHHHH
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL-------KKVQWIYMIVDEGHRLKN------HECALAK 258 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L-------~~~~w~~vIiDEaHriKN------~~sk~~k 258 (832)
.+--..++...+.....+......|.++..|++.+.+...+. ..-.|.+|-|||+|.... +..+...
T Consensus 163 ~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ 242 (695)
T KOG0353|consen 163 MLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALG 242 (695)
T ss_pred hccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHH
Confidence 555556666666666666666678999999999987764443 334688999999998744 2334444
Q ss_pred HH-HccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 003311 259 TI-SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337 (832)
Q Consensus 259 al-~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfl 337 (832)
.+ +.|+....++||||...+-+.+.-.+|..-. .-.|..-|+.|
T Consensus 243 ilkrqf~~~~iigltatatn~vl~d~k~il~ie~------~~tf~a~fnr~----------------------------- 287 (695)
T KOG0353|consen 243 ILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA------AFTFRAGFNRP----------------------------- 287 (695)
T ss_pred HHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh------hheeecccCCC-----------------------------
Confidence 44 6788899999999998887777666553311 01122222222
Q ss_pred hhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhH
Q 003311 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKE 417 (832)
Q Consensus 338 lRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~ 417 (832)
.....++.-|-++ +
T Consensus 288 -------------nl~yev~qkp~n~-----------------------------------------------------d 301 (695)
T KOG0353|consen 288 -------------NLKYEVRQKPGNE-----------------------------------------------------D 301 (695)
T ss_pred -------------CceeEeeeCCCCh-----------------------------------------------------H
Confidence 1111111111000 0
Q ss_pred HHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 418 EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 418 ~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
.-.+-+.+++..- -.|..-||||-...-.+.+...|+..|+....+|..+.+++|.-+-+.|-.+... ++
T Consensus 302 ------d~~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiq---vi 371 (695)
T KOG0353|consen 302 ------DCIEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQ---VI 371 (695)
T ss_pred ------HHHHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceE---EE
Confidence 0011122222221 2477889999999999999999999999999999999999999999999887654 68
Q ss_pred EeccccccccCcccCCeEEEeCCCCChhhHHH-------------------------------------------Hhhhc
Q 003311 498 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQ-------------------------------------------AEDRA 534 (832)
Q Consensus 498 lSt~agg~GLNL~~ad~VI~~D~~wNp~~~~Q-------------------------------------------AigRa 534 (832)
+.|-|.|.||+-+.+..||+-..|-+...|.| --|||
T Consensus 372 vatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgra 451 (695)
T KOG0353|consen 372 VATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRA 451 (695)
T ss_pred EEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcccc
Confidence 89999999999999999999999999999999 56899
Q ss_pred cccCCcCcEEEEEEE
Q 003311 535 HRIGQKKEVRVFVLV 549 (832)
Q Consensus 535 hRiGQ~k~V~V~rLi 549 (832)
+|-|++-++..|+=.
T Consensus 452 grd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 452 GRDDMKADCILYYGF 466 (695)
T ss_pred ccCCCcccEEEEech
Confidence 999999997666543
No 109
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.60 E-value=1.7e-14 Score=145.14 Aligned_cols=159 Identities=26% Similarity=0.367 Sum_probs=115.6
Q ss_pred CCCchHHHHHHHHHHHHhhccC-CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC-CCchHHHHHHHHhhCCC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNN-LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KAVLPNWINEFSTWAPS 189 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~-~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~ 189 (832)
..+++|||.+++..+.. . .++++..++|+|||..++.++........ ..++||++| ..+..||..++..+++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 6 FEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred CCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 46899999999998875 4 78899999999999988777766655432 458999999 47789999999998865
Q ss_pred ---ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCC--hhhHHHHHHHc
Q 003311 190 ---IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKN--HECALAKTISG 262 (832)
Q Consensus 190 ---~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN--~~sk~~kal~~ 262 (832)
.....+.+.... .... .+.. ..++|+++||+.+...... +....++++||||+|++.+ ........+..
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~-~~~~--~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 81 LGLKVVGLYGGDSKR-EQLR-KLES--GKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred CCeEEEEEeCCcchH-HHHH-HHhc--CCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 344455554321 1111 1111 3348999999999887655 4455788999999999985 33444444454
Q ss_pred c-ccceEEEeeccCCCCC
Q 003311 263 Y-QIQRRLLLTGTPIQNS 279 (832)
Q Consensus 263 l-~~~~rllLTGTPlqN~ 279 (832)
+ ...+++++||||..+.
T Consensus 157 ~~~~~~~v~~saT~~~~~ 174 (201)
T smart00487 157 LPKNVQLLLLSATPPEEI 174 (201)
T ss_pred CCccceEEEEecCCchhH
Confidence 4 5788999999997443
No 110
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.60 E-value=1.5e-13 Score=148.02 Aligned_cols=324 Identities=15% Similarity=0.186 Sum_probs=215.9
Q ss_pred hHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCceEEE
Q 003311 116 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVV 194 (832)
Q Consensus 116 r~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~v~~ 194 (832)
.|-|..++.-++. .+....+++++|.||++..- +-.|+. .|-++||.|+ .|+....+.+.+.--...-+-
T Consensus 22 s~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQ--LPaL~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLN 92 (641)
T KOG0352|consen 22 SRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQ--LPALVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLN 92 (641)
T ss_pred ChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhh--chHHHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhc
Confidence 3689999988776 45567899999999997641 111222 2467899996 566666666665421111111
Q ss_pred EcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh-----HHHHh-hcCceEEEEeCCcccCChh------hHHHHHH-H
Q 003311 195 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD-----RQYLK-KVQWIYMIVDEGHRLKNHE------CALAKTI-S 261 (832)
Q Consensus 195 ~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d-----~~~L~-~~~w~~vIiDEaHriKN~~------sk~~kal-~ 261 (832)
-.-+..+|..+...+........++.+|++....+ ...|. .....|++|||||.+..++ ....-+| .
T Consensus 93 SKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS 172 (641)
T KOG0352|consen 93 SKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRS 172 (641)
T ss_pred chhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHh
Confidence 22345677777777766667778899998876443 23333 3357799999999985433 2233333 4
Q ss_pred ccccceEEEeeccCCCCCHHHHHHHHhccCCCC-CCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 003311 262 GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTI-FNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340 (832)
Q Consensus 262 ~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~-f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR 340 (832)
.+.....+.||||.-..--+|++..|++-.|-- |.+. .|...+
T Consensus 173 ~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP-~FR~NL----------------------------------- 216 (641)
T KOG0352|consen 173 VCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP-TFRDNL----------------------------------- 216 (641)
T ss_pred hCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc-chhhhh-----------------------------------
Confidence 556667899999987777788888888776632 2221 111100
Q ss_pred hHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHH
Q 003311 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 420 (832)
Q Consensus 341 ~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~ 420 (832)
+|+-..... -...+.++..-.+++...|--+...
T Consensus 217 ---------------------------FYD~~~K~~---------I~D~~~~LaDF~~~~LG~~~~~~~~---------- 250 (641)
T KOG0352|consen 217 ---------------------------FYDNHMKSF---------ITDCLTVLADFSSSNLGKHEKASQN---------- 250 (641)
T ss_pred ---------------------------hHHHHHHHH---------hhhHhHhHHHHHHHhcCChhhhhcC----------
Confidence 111000000 0001111111111111111111000
Q ss_pred hhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 003311 421 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 500 (832)
Q Consensus 421 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt 500 (832)
.| ....--||||..+..++.|+-.|..+|+....+|.+.+..+|.++-+.|-.++.+ +|+.|
T Consensus 251 ---~K------------~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P---vI~AT 312 (641)
T KOG0352|consen 251 ---KK------------TFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP---VIAAT 312 (641)
T ss_pred ---CC------------CcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC---EEEEE
Confidence 00 0123469999999999999999999999999999999999999999999998888 79999
Q ss_pred cccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEE
Q 003311 501 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVL 548 (832)
Q Consensus 501 ~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rL 548 (832)
-+.|.|++-+.+..||+.+++-|.+.|.|--|||+|-|-..-++.|+=
T Consensus 313 ~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYs 360 (641)
T KOG0352|consen 313 VSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYS 360 (641)
T ss_pred eccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeec
Confidence 999999999999999999999999999999999999998777887763
No 111
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.59 E-value=3.5e-13 Score=162.74 Aligned_cols=310 Identities=18% Similarity=0.251 Sum_probs=208.5
Q ss_pred CCCchHHHHHHHHHHHHhhccCC--CeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchH-HHHHHHHhhCC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNL--NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP-NWINEFSTWAP 188 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~--~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~-qW~~E~~k~~p 188 (832)
+.+-.|=|..+++-+..-...+. .-+||.++|.|||=+|+=.+-..... .+-+.|+||+.+|. |..+.|..-|.
T Consensus 592 PyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GKQVAvLVPTTlLA~QHy~tFkeRF~ 668 (1139)
T COG1197 592 PYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GKQVAVLVPTTLLAQQHYETFKERFA 668 (1139)
T ss_pred CCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CCeEEEEcccHHhHHHHHHHHHHHhc
Confidence 35778899999999988665543 45999999999999987443222222 24689999987764 45566665554
Q ss_pred CceEEE----EcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc-
Q 003311 189 SIAAVV----YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY- 263 (832)
Q Consensus 189 ~~~v~~----~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l- 263 (832)
+..|-+ -.-+..+.+.+...+.. ++.||||-|+..+.++..+ .+..+|||||=||+.=..- ..++.+
T Consensus 669 ~fPV~I~~LSRF~s~kE~~~il~~la~--G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFGVk~K---EkLK~Lr 740 (1139)
T COG1197 669 GFPVRIEVLSRFRSAKEQKEILKGLAE--GKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFGVKHK---EKLKELR 740 (1139)
T ss_pred CCCeeEEEecccCCHHHHHHHHHHHhc--CCccEEEechHhhCCCcEE---ecCCeEEEechhhcCccHH---HHHHHHh
Confidence 433322 22344455555555544 8999999999999775432 2456999999999854333 344444
Q ss_pred ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHh
Q 003311 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343 (832)
Q Consensus 264 ~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~ 343 (832)
..-..|-||||||...|.= +|.. ++.| .
T Consensus 741 ~~VDvLTLSATPIPRTL~M--sm~G-------------------------------------iRdl-------------S 768 (1139)
T COG1197 741 ANVDVLTLSATPIPRTLNM--SLSG-------------------------------------IRDL-------------S 768 (1139)
T ss_pred ccCcEEEeeCCCCcchHHH--HHhc-------------------------------------chhh-------------h
Confidence 4568899999999876541 1110 0000 0
Q ss_pred HHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhc
Q 003311 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 423 (832)
Q Consensus 344 dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S 423 (832)
+. .-||.....|..-..+. ++
T Consensus 769 -vI-~TPP~~R~pV~T~V~~~-----------------------------------------------d~---------- 789 (1139)
T COG1197 769 -VI-ATPPEDRLPVKTFVSEY-----------------------------------------------DD---------- 789 (1139)
T ss_pred -hc-cCCCCCCcceEEEEecC-----------------------------------------------Ch----------
Confidence 00 12443333332111110 00
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
...-..++.++ ..|.+|-...+....+..+...|+.. ..++...||.|+..+-+.++..|.++..+ +|+||-
T Consensus 790 --~~ireAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d---VLv~TT 863 (1139)
T COG1197 790 --LLIREAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD---VLVCTT 863 (1139)
T ss_pred --HHHHHHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC---EEEEee
Confidence 00111233333 34667777778888888888888753 67899999999999999999999998877 799999
Q ss_pred ccccccCcccCCeEEEeCCC-CChhhHHHHhhhccccCCcCcEEEEEEEeC
Q 003311 502 AGGLGLNLQTADTVIIFDSD-WNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~-wNp~~~~QAigRahRiGQ~k~V~V~rLit~ 551 (832)
....|||+++|||+|+-+.+ +--++.-|-.||++|-. +.-+.|-|+..
T Consensus 864 IIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 864 IIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred eeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 99999999999999999887 57889999999999943 44667766654
No 112
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.58 E-value=3.6e-15 Score=129.26 Aligned_cols=78 Identities=33% Similarity=0.559 Sum_probs=74.4
Q ss_pred HHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhcccc
Q 003311 458 IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRI 537 (832)
Q Consensus 458 ~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRi 537 (832)
.+|+..|+.+..++|.++..+|..+++.|+.+... +|++|.++++|||++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 36889999999999999999999999999998775 799999999999999999999999999999999999999999
Q ss_pred C
Q 003311 538 G 538 (832)
Q Consensus 538 G 538 (832)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 113
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.57 E-value=6.4e-13 Score=158.30 Aligned_cols=125 Identities=21% Similarity=0.176 Sum_probs=109.8
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
.+++..|.+.+......|.++||||.....++.|..+|...|+++..+||.++..+|.++++.|+.+... +|++|..
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~---VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFD---VLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCce---EEEEcCh
Confidence 4577788888888888899999999999999999999999999999999999999999999999887654 6899999
Q ss_pred cccccCcccCCeEEEeC-----CCCChhhHHHHhhhccccCCcCcEEEEEEEeCCC
Q 003311 503 GGLGLNLQTADTVIIFD-----SDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 553 (832)
Q Consensus 503 gg~GLNL~~ad~VI~~D-----~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~s 553 (832)
+++|++++.++.||++| .+-+...++|++||++|.. .-.|+.|+...|
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~ 554 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKIT 554 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCC
Confidence 99999999999999999 5668899999999999973 334666666544
No 114
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1.1e-12 Score=156.75 Aligned_cols=391 Identities=17% Similarity=0.203 Sum_probs=221.9
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchH-H---HHHHHHhhC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP-N---WINEFSTWA 187 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~-q---W~~E~~k~~ 187 (832)
|..+++-|+-|.--| +.|-|.-..||.|||+++...+......+ . .+-||+|+..|. + |...+-+++
T Consensus 79 g~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa~l~aL~G--~-~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 79 GMRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPAYLNALTG--K-GVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHHHHHHHcC--C-CEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 567788888776433 33558889999999998754432122221 2 356999986553 3 666665555
Q ss_pred CCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh---------HHHHhhcCceEEEEeCCcccCChhhHHHH
Q 003311 188 PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD---------RQYLKKVQWIYMIVDEGHRLKNHECALAK 258 (832)
Q Consensus 188 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d---------~~~L~~~~w~~vIiDEaHriKN~~sk~~k 258 (832)
++.+.+..|.......... -..+|++.|...+.-| ...+....+.++|||||.++-=.
T Consensus 150 -Glsv~~i~~~~~~~er~~~------y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLID------ 216 (830)
T PRK12904 150 -GLSVGVILSGMSPEERREA------YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILID------ 216 (830)
T ss_pred -CCeEEEEcCCCCHHHHHHh------cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheec------
Confidence 5666666664332211111 2478999997666211 11233446889999999987321
Q ss_pred HHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHH----------------
Q 003311 259 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQ---------------- 322 (832)
Q Consensus 259 al~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~---------------- 322 (832)
.+..-+++||.+-. ..++|..++-+-+.+-... . |... .....+.+++...
T Consensus 217 -----eArtpLiiSg~~~~--~~~~y~~~~~~v~~l~~~~-d----y~vd-e~~~~v~lte~G~~~~e~~~~~~~ly~~~ 283 (830)
T PRK12904 217 -----EARTPLIISGPAED--SSELYKRANKIVPTLEKEG-D----YTVD-EKSRTVGLTEEGIEKAEKLLGIENLYDPE 283 (830)
T ss_pred -----cCCCceeeECCCCc--ccHHHHHHHHHHHhcCCCC-C----eEEE-cCCCeeeECHHHHHHHHHHhCCccccChh
Confidence 23344777876532 2345554443322211100 0 0000 0011122222211
Q ss_pred -HHHHHHHHhhhhhh-hhhhhHhHHhhcCCCCeEEEEEcCCC-------HHHHHHHHHHHHhcccccccCCC--cchhHH
Q 003311 323 -LLIIRRLHHVIRPF-ILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGLDTGTG--KSKSLQ 391 (832)
Q Consensus 323 -~~~~~~L~~~L~pf-llRR~k~dv~~~LP~k~e~~v~~~ms-------~~Q~~lY~~i~~~~~~~~~~~~~--~~~~l~ 391 (832)
....+.+...|+-. ++.+ ++.--+.+....+|- +.| .++.-+-+.+..+....+..... ..-.++
T Consensus 284 ~~~~~~~i~~AL~A~~l~~~---d~dYiV~dg~V~ivD-e~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~q 359 (830)
T PRK12904 284 NIALVHHLNQALRAHELFKR---DVDYIVKDGEVVIVD-EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQ 359 (830)
T ss_pred hhHHHHHHHHHHHHHHHHhc---CCcEEEECCEEEEEE-CCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHH
Confidence 11112222222211 1111 111001111111111 111 23333344443332222221110 111222
Q ss_pred HH-----------------HHHHHHhhCCCccccccccchhhH----HH-HhhcchHHHHHHHHHhhhhcCCeEEEEecc
Q 003311 392 NL-----------------SMQLRKCCNHPYLFVGEYNMWRKE----EI-IRASGKFELLDRLLPKLRKSGHRVLLFSQM 449 (832)
Q Consensus 392 ~~-----------------~~~LRk~cnhP~l~~~~~~~~~~~----~l-~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~ 449 (832)
|+ ...+.++.+-+.+..+...+.... .+ .....|+.++.+.+.++...|.+|||||.+
T Consensus 360 n~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~S 439 (830)
T PRK12904 360 NYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVS 439 (830)
T ss_pred HHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 22 234555555444433322111100 01 123468999999999888899999999999
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccC-----------------
Q 003311 450 TRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTA----------------- 512 (832)
Q Consensus 450 ~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~a----------------- 512 (832)
....+.|...|...|+++..|+|. ..+|+..|..|..+... ++|+|..+|+|+|+.-.
T Consensus 440 i~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~ 514 (830)
T PRK12904 440 IEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATNMAGRGTDIKLGGNPEMLAAALLEEETEE 514 (830)
T ss_pred HHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEecccccCCcCccCCCchhhhhhhhhhhhhhH
Confidence 999999999999999999999995 77899999999876654 79999999999997643
Q ss_pred ---------------------CeEEEeCCCCChhhHHHHhhhccccCCcCcEEEE
Q 003311 513 ---------------------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 513 ---------------------d~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
=+||.-..+-|-..+.|..||++|.|..-..+.|
T Consensus 515 ~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~ 569 (830)
T PRK12904 515 QIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 569 (830)
T ss_pred HHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE
Confidence 3788889999999999999999999988765554
No 115
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1.2e-12 Score=156.10 Aligned_cols=397 Identities=15% Similarity=0.177 Sum_probs=225.9
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCch----HHHHHHHHhhC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL----PNWINEFSTWA 187 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k~~ 187 (832)
|-..++-|+-|---| +.|-|.-..||.|||+++...+ ++.... ...+.||+|+.-| ..|...+..|+
T Consensus 80 gm~~ydVQliGgl~L------~~G~IaEm~TGEGKTL~a~lp~-~l~al~--g~~VhIvT~ndyLA~RD~e~m~~l~~~l 150 (908)
T PRK13107 80 EMRHFDVQLLGGMVL------DSNRIAEMRTGEGKTLTATLPA-YLNALT--GKGVHVITVNDYLARRDAENNRPLFEFL 150 (908)
T ss_pred CCCcCchHHhcchHh------cCCccccccCCCCchHHHHHHH-HHHHhc--CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 456777888775433 3455778999999999875443 222222 2358999998655 34888888887
Q ss_pred CCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHH-----HHh----HHHHhhcCceEEEEeCCcccCChhhHHHH
Q 003311 188 PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI-----MRD----RQYLKKVQWIYMIVDEGHRLKNHECALAK 258 (832)
Q Consensus 188 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l-----~~d----~~~L~~~~w~~vIiDEaHriKN~~sk~~k 258 (832)
++.+.+..+........ ..-.++|+++|...+ ... ...+....+.++||||+..+.-.
T Consensus 151 -Glsv~~i~~~~~~~~r~------~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD------ 217 (908)
T PRK13107 151 -GLTVGINVAGLGQQEKK------AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILID------ 217 (908)
T ss_pred -CCeEEEecCCCCHHHHH------hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccc------
Confidence 66666665544321111 113678999996554 222 12223357889999999877432
Q ss_pred HHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCC----ChHHHH--HHhcccccccCcccCChHHHHHHHH-----
Q 003311 259 TISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFN----SVENFE--EWFNAPFKDRGQVALTDEEQLLIIR----- 327 (832)
Q Consensus 259 al~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~----~~~~F~--~~f~~~~~~~~~~~~~~ee~~~~~~----- 327 (832)
.+..-|++||.+ ... .++|..++-+-..+.. ....|. ..|... .....+.+++.....+-.
T Consensus 218 -----EArtPLIISg~~-~~~-~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~id-ek~~~v~LTe~G~~~~e~~l~~~ 289 (908)
T PRK13107 218 -----EARTPLIISGAA-EDS-SELYIKINTLIPNLIRQDKEDTEEYVGEGDYSID-EKAKQVHFTERGQEKVENLLIER 289 (908)
T ss_pred -----cCCCceeecCCC-ccc-hHHHHHHHHHHHHHHhhhhccccccCCCCCEEEe-cCCCeeeechHHHHHHHHHHHhC
Confidence 234558888854 333 4555544422111100 000000 001000 111223344332211111
Q ss_pred -------------------HHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCC-------HHHHHHHHHHHHhcccccc
Q 003311 328 -------------------RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGLD 381 (832)
Q Consensus 328 -------------------~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms-------~~Q~~lY~~i~~~~~~~~~ 381 (832)
.+...|+-+.+- ++++.--+-+. ++++.-+.| .++.-+-+.+..+....+.
T Consensus 290 ~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf--~~d~dYiV~dg-~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~ 366 (908)
T PRK13107 290 GMLAEGDSLYSAANISLLHHVNAALRAHTLF--EKDVDYIVQDN-EVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQ 366 (908)
T ss_pred CcccCcccccCchhhHHHHHHHHHHHHHHHH--hcCCceEEECC-EEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCC
Confidence 111111111110 01110000011 111111111 1223333444433332222
Q ss_pred cCC--CcchhHHHHHH-----------------HHHHhhCCCccccccccchh-----hHHHHhhcchHHHHHHHHHhhh
Q 003311 382 TGT--GKSKSLQNLSM-----------------QLRKCCNHPYLFVGEYNMWR-----KEEIIRASGKFELLDRLLPKLR 437 (832)
Q Consensus 382 ~~~--~~~~~l~~~~~-----------------~LRk~cnhP~l~~~~~~~~~-----~~~l~~~S~Kl~~L~~lL~~l~ 437 (832)
... -..-.++|++. .+.++.+-+.+..+...+.. +.-......|+.++.+-+..+.
T Consensus 367 ~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~ 446 (908)
T PRK13107 367 NENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCR 446 (908)
T ss_pred CCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHH
Confidence 111 11123333332 23444433333322111110 0011234678999999999999
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccC-----
Q 003311 438 KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTA----- 512 (832)
Q Consensus 438 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~a----- 512 (832)
+.|.+|||||.+....+.|..+|...|+++..+++..+..+|..+.+.|+.+. ++|+|..+|+|+|+.-.
T Consensus 447 ~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATnmAGRGTDIkLggn~~~ 521 (908)
T PRK13107 447 ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATNMAGRGTDIVLGGNWNM 521 (908)
T ss_pred HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecCCcCCCcceecCCchHH
Confidence 99999999999999999999999999999999999999999999999998865 79999999999997632
Q ss_pred --------------------------------CeEEEeCCCCChhhHHHHhhhccccCCcCcEEEE
Q 003311 513 --------------------------------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 513 --------------------------------d~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
=+||.-..+-|-..+.|..||++|.|..-....|
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~ 587 (908)
T PRK13107 522 EIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY 587 (908)
T ss_pred hhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE
Confidence 3789999999999999999999999987654443
No 116
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.56 E-value=3.7e-13 Score=158.47 Aligned_cols=334 Identities=19% Similarity=0.186 Sum_probs=197.5
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhc-------CCCCCEEEEeCC-CchHHHHHHHHh
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-------GVTGPHVIVAPK-AVLPNWINEFST 185 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~-------~~~~p~LIV~P~-sll~qW~~E~~k 185 (832)
+|-..|-++.. ..|..+.|.|+|.+||+|||..|...|..++..+ ...-+++.|+|. +|...-.+.|.+
T Consensus 110 ~fN~iQS~vFp---~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~k 186 (1230)
T KOG0952|consen 110 EFNRIQSEVFP---VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSK 186 (1230)
T ss_pred HHHHHHHHhhh---hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhh
Confidence 34444444433 3467888999999999999999976666666532 123478999995 555544444444
Q ss_pred hCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHH-------HhHHHHhhcCceEEEEeCCcccCChhh--
Q 003311 186 WAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIM-------RDRQYLKKVQWIYMIVDEGHRLKNHEC-- 254 (832)
Q Consensus 186 ~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~-------~d~~~L~~~~w~~vIiDEaHriKN~~s-- 254 (832)
-+. ++.|.-+.|....-+. +. ...+|+|||+|.+- .+...+. ...+|||||.|.+.....
T Consensus 187 kl~~~gi~v~ELTGD~ql~~t---ei----~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpv 257 (1230)
T KOG0952|consen 187 KLAPLGISVRELTGDTQLTKT---EI----ADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPV 257 (1230)
T ss_pred hcccccceEEEecCcchhhHH---HH----HhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccch
Confidence 433 6889999997654322 11 56789999998752 1122233 356899999999976443
Q ss_pred ---HHHHHHH----ccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHH
Q 003311 255 ---ALAKTIS----GYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIR 327 (832)
Q Consensus 255 ---k~~kal~----~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~ 327 (832)
-.++.++ ....-+.++||||- . |.. .+-.||...+....-.|.+.|..
T Consensus 258 lEtiVaRtlr~vessqs~IRivgLSATl-P-N~e---DvA~fL~vn~~~glfsFd~~yRP-------------------- 312 (1230)
T KOG0952|consen 258 LETIVARTLRLVESSQSMIRIVGLSATL-P-NYE---DVARFLRVNPYAGLFSFDQRYRP-------------------- 312 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEEeeccC-C-CHH---HHHHHhcCCCccceeeecccccc--------------------
Confidence 3333332 12345779999994 2 233 34455555444444444443321
Q ss_pred HHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCC--HHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCc
Q 003311 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMS--AWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPY 405 (832)
Q Consensus 328 ~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms--~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~ 405 (832)
.-| ....+-++.. ..|.+..
T Consensus 313 --------vpL--------------~~~~iG~k~~~~~~~~~~~------------------------------------ 334 (1230)
T KOG0952|consen 313 --------VPL--------------TQGFIGIKGKKNRQQKKNI------------------------------------ 334 (1230)
T ss_pred --------cce--------------eeeEEeeecccchhhhhhH------------------------------------
Confidence 100 0001111100 0000000
Q ss_pred cccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHH----HhCCC----------------
Q 003311 406 LFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYL----KLNDF---------------- 465 (832)
Q Consensus 406 l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L----~~~g~---------------- 465 (832)
...+.+.+. ++...||.|+||++.+.-.--.+..| ...|.
T Consensus 335 ----------------d~~~~~kv~----e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~el 394 (1230)
T KOG0952|consen 335 ----------------DEVCYDKVV----EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKEL 394 (1230)
T ss_pred ----------------HHHHHHHHH----HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHH
Confidence 001122222 23356999999998864333333333 22222
Q ss_pred ---eEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChh----------hHHHHhh
Q 003311 466 ---KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQ----------MDQQAED 532 (832)
Q Consensus 466 ---~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~----------~~~QAig 532 (832)
.+...|.++...+|.-+-+.|..|..+ +|++|.....|+||++--.+|---.-|++. ..+|-.|
T Consensus 395 f~~g~~iHhAGm~r~DR~l~E~~F~~G~i~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifG 471 (1230)
T KOG0952|consen 395 FQQGMGIHHAGMLRSDRQLVEKEFKEGHIK---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFG 471 (1230)
T ss_pred HHhhhhhcccccchhhHHHHHHHHhcCCce---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHh
Confidence 134456678888999999999998766 799999999999999766666555556554 3689999
Q ss_pred hccccCCcCcEEEEEEEeC-------------CCHHHHHHHHHHHH
Q 003311 533 RAHRIGQKKEVRVFVLVSV-------------GSIEEVILERAKQK 565 (832)
Q Consensus 533 RahRiGQ~k~V~V~rLit~-------------~siEe~Il~~~~~K 565 (832)
||+|..=.+.-..+-+-+. +.||...+..+..-
T Consensus 472 RAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dn 517 (1230)
T KOG0952|consen 472 RAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDN 517 (1230)
T ss_pred ccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHh
Confidence 9999875554333333332 45666666665543
No 117
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=4.2e-14 Score=151.76 Aligned_cols=314 Identities=18% Similarity=0.246 Sum_probs=206.9
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHH-HHHHhhCCC--c
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI-NEFSTWAPS--I 190 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~-~E~~k~~p~--~ 190 (832)
++-..|+.|+--++. +.+.+.-...|+|||.+-...+...........-+||++|...+.+.. .-+..+++. .
T Consensus 48 kPSaIQqraI~p~i~----G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~ 123 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIK----GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDV 123 (397)
T ss_pred CchHHHhcccccccc----CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccce
Confidence 555678888766665 888999999999999996555554443322223469999987665543 334445443 3
Q ss_pred eEEEEcCChh-HHHHHHHHHHhhcCCccEEecCHHHHHHh--HHHHhhcCceEEEEeCCcccCC--hhhHHHHHHHccc-
Q 003311 191 AAVVYDGRPD-ERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKN--HECALAKTISGYQ- 264 (832)
Q Consensus 191 ~v~~~~g~~~-~r~~~~~~~~~~~~~~dVvItTye~l~~d--~~~L~~~~w~~vIiDEaHriKN--~~sk~~kal~~l~- 264 (832)
.+....|... .+.... +. ....+|++.|...+..- ...|......+.|+|||..+.. ...+....+..++
T Consensus 124 ~v~~~igg~~~~~~~~~--i~--~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~ 199 (397)
T KOG0327|consen 124 SVHACIGGTNVRREDQA--LL--KDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPS 199 (397)
T ss_pred eeeeecCcccchhhhhh--hh--ccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCc
Confidence 4443334332 222211 11 14578999998766432 2355666788999999998854 4455666666664
Q ss_pred cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhH
Q 003311 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344 (832)
Q Consensus 265 ~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~d 344 (832)
....+++|||-- .++.-+ =.+|... |..+-+.|.+
T Consensus 200 ~vQv~l~SAT~p----~~vl~v--------------t~~f~~~---------------------------pv~i~vkk~~ 234 (397)
T KOG0327|consen 200 DVQVVLLSATMP----SDVLEV--------------TKKFMRE---------------------------PVRILVKKDE 234 (397)
T ss_pred chhheeecccCc----HHHHHH--------------HHHhccC---------------------------ceEEEecchh
Confidence 345677888831 111000 0000000 0000011111
Q ss_pred HhhcCCCCeEEEEEcCCC-HHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhc
Q 003311 345 VEKYLPGKSQVILKCDMS-AWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 423 (832)
Q Consensus 345 v~~~LP~k~e~~v~~~ms-~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S 423 (832)
++ +.++.+|... ...
T Consensus 235 ----------------ltl~gikq~~i~v------------------------------------------------~k~ 250 (397)
T KOG0327|consen 235 ----------------LTLEGIKQFYINV------------------------------------------------EKE 250 (397)
T ss_pred ----------------hhhhheeeeeeec------------------------------------------------ccc
Confidence 00 0011111100 011
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
.|+..|..+.. .-...+|||+..+-++.|...|..+|++...++|.+...+|..+++.|+.+.+. +|++|...
T Consensus 251 ~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr---vlIttdl~ 323 (397)
T KOG0327|consen 251 EKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR---VLITTDLL 323 (397)
T ss_pred ccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce---EEeecccc
Confidence 16677777766 344689999999999999999999999999999999999999999999998886 79999999
Q ss_pred ccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCC
Q 003311 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 553 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~s 553 (832)
+.|++++.++.||+||.|-|...|.+++||++|.|-+ -.+..++++.+
T Consensus 324 argidv~~~slvinydlP~~~~~yihR~gr~gr~grk--g~~in~v~~~d 371 (397)
T KOG0327|consen 324 ARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK--GVAINFVTEED 371 (397)
T ss_pred ccccchhhcceeeeeccccchhhhhhhcccccccCCC--ceeeeeehHhh
Confidence 9999999999999999999999999999999999944 45566776653
No 118
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.55 E-value=6.1e-13 Score=165.02 Aligned_cols=107 Identities=18% Similarity=0.148 Sum_probs=87.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCe---EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeE
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFK---FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 515 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~---~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~V 515 (832)
....+|||+.....++.+.+.|...+++ ++.++|+++.++|..+++.+ + .+-+|+||..++.||+++++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g---~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH--S---GRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc--C---CeeEEEeccHHhhccccCcceEE
Confidence 4568999999999999999999887664 67899999999999887653 1 23479999999999999999999
Q ss_pred EEeC---------------CCCCh---hhHHHHhhhccccCCcCcEEEEEEEeCCC
Q 003311 516 IIFD---------------SDWNP---QMDQQAEDRAHRIGQKKEVRVFVLVSVGS 553 (832)
Q Consensus 516 I~~D---------------~~wNp---~~~~QAigRahRiGQ~k~V~V~rLit~~s 553 (832)
|.++ .+..| ..+.||.|||+|. .+-.+|+|+++..
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d 412 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDD 412 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHH
Confidence 9975 23333 5789999999997 4677889998654
No 119
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.55 E-value=5.1e-14 Score=133.28 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=99.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc-hHHHHHHHHhhCC-CceEEEEcCChhHHHHHHHHHHhh
Q 003311 135 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINEFSTWAP-SIAAVVYDGRPDERKAMREEFFSE 212 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~p-~~~v~~~~g~~~~r~~~~~~~~~~ 212 (832)
++++.+++|+|||.+++.++..+... ...+++||+||... ..+|...+..+.+ ...+.++.+.......... .
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 76 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----L 76 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH----h
Confidence 57899999999999999999888765 33568999999865 4556677777775 4556666665443332211 1
Q ss_pred cCCccEEecCHHHHHHhHHHH--hhcCceEEEEeCCcccCChhhHHH---HHHHccccceEEEeeccC
Q 003311 213 RGRFNVLITHYDLIMRDRQYL--KKVQWIYMIVDEGHRLKNHECALA---KTISGYQIQRRLLLTGTP 275 (832)
Q Consensus 213 ~~~~dVvItTye~l~~d~~~L--~~~~w~~vIiDEaHriKN~~sk~~---kal~~l~~~~rllLTGTP 275 (832)
....+++++||+.+....... ....|++|||||+|.+.+...... .........+++++||||
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 267889999999887755432 244799999999999987665443 344556788999999998
No 120
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.54 E-value=2.1e-11 Score=146.24 Aligned_cols=124 Identities=23% Similarity=0.213 Sum_probs=108.9
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
.+++..|...|......|.++||||.....++.|..+|...|+++..+||.++..+|..++..|+.+... +|++|..
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~---vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCce---EEEEeCH
Confidence 3567788888888888899999999999999999999999999999999999999999999999886643 6889999
Q ss_pred cccccCcccCCeEEEeCC-----CCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 503 GGLGLNLQTADTVIIFDS-----DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 503 gg~GLNL~~ad~VI~~D~-----~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
++.|++++.++.||++|. +-++..++|++||++|- +.-.++.|++..
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~---~~G~~i~~~~~~ 557 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---VNGKVILYADKI 557 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC---CCCEEEEEecCC
Confidence 999999999999999997 46899999999999994 244566777643
No 121
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.49 E-value=1.2e-12 Score=162.95 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=88.4
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCC---CeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeE
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLND---FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 515 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g---~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~V 515 (832)
....+|||+.....++.+...|...+ +.+..++|+++.++|..+++.+. . .-+|+||..+..||+++++.+|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~----~-rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS----G-RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC----C-ceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998654 56889999999999998865442 1 2378999999999999999999
Q ss_pred EEeCCC------------------CChhhHHHHhhhccccCCcCcEEEEEEEeCCCH
Q 003311 516 IIFDSD------------------WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554 (832)
Q Consensus 516 I~~D~~------------------wNp~~~~QAigRahRiGQ~k~V~V~rLit~~si 554 (832)
|.++.. -+-..+.||.|||+|.| +-.+|+|+++...
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~ 406 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF 406 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH
Confidence 998732 13468999999999997 6778999987543
No 122
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=3.3e-12 Score=152.85 Aligned_cols=116 Identities=18% Similarity=0.263 Sum_probs=103.8
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
..|+.+|.+.+..+...|.+|||||.+....+.|..+|...|+++..|++ ...+|+..|..|..+... ++|+|..
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~---VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA---VTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe---EEEeccC
Confidence 46999999999998899999999999999999999999999999999997 677999999999876654 8999999
Q ss_pred cccccCcccCC--------eEEEeCCCCChhhHHHHhhhccccCCcCcE
Q 003311 503 GGLGLNLQTAD--------TVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543 (832)
Q Consensus 503 gg~GLNL~~ad--------~VI~~D~~wNp~~~~QAigRahRiGQ~k~V 543 (832)
+|+|+|+.-.. +||.++.+-+...|.|++||++|.|..-..
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 99999998443 448889999999999999999999977654
No 123
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.48 E-value=2.8e-13 Score=146.12 Aligned_cols=316 Identities=18% Similarity=0.210 Sum_probs=209.7
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHH-HHHHHhcCCCCCEEEEeCCC-chHH---HHHHHHhhCC
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI-AYLLENKGVTGPHVIVAPKA-VLPN---WINEFSTWAP 188 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali-~~l~~~~~~~~p~LIV~P~s-ll~q---W~~E~~k~~p 188 (832)
++.|.|...+.-++. +...+-..-+|+|||..-+.-+ ..|.......-+.||+.|.. |..| ...++.++.
T Consensus 43 ~ptpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt- 117 (529)
T KOG0337|consen 43 TPTPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT- 117 (529)
T ss_pred CCCchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-
Confidence 455667777665554 4444455679999998865443 44443332334789999974 4444 344555544
Q ss_pred CceEE-EEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH--HHHhhcCceEEEEeCCcccCC--hhhHHHHHHHcc
Q 003311 189 SIAAV-VYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKN--HECALAKTISGY 263 (832)
Q Consensus 189 ~~~v~-~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~--~~L~~~~w~~vIiDEaHriKN--~~sk~~kal~~l 263 (832)
.+... .|+|..-+..-. .-..++||||.|+..+..-. -.|.-....|||+||+.+|-. ..-++.+.+.++
T Consensus 118 ~lr~s~~~ggD~~eeqf~-----~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl 192 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFI-----LLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRL 192 (529)
T ss_pred chhhhhhcccchHHHHHH-----HhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhC
Confidence 34444 555554332211 11157899999998775321 113334567999999999953 567888888888
Q ss_pred c-cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhH
Q 003311 264 Q-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 342 (832)
Q Consensus 264 ~-~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k 342 (832)
+ +...+++|||- .+.+. .|... .+..|.++|
T Consensus 193 ~~~~QTllfSatl-p~~lv------------------~faka--------------------------Gl~~p~lVR--- 224 (529)
T KOG0337|consen 193 PESRQTLLFSATL-PRDLV------------------DFAKA--------------------------GLVPPVLVR--- 224 (529)
T ss_pred CCcceEEEEeccC-chhhH------------------HHHHc--------------------------cCCCCceEE---
Confidence 5 44679999994 12111 11110 011222222
Q ss_pred hHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhh
Q 003311 343 DEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 422 (832)
Q Consensus 343 ~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~ 422 (832)
-||+. ..++.- +++.+ .+..
T Consensus 225 ldvet------------kise~l------------------------------k~~f~------------------~~~~ 244 (529)
T KOG0337|consen 225 LDVET------------KISELL------------------------------KVRFF------------------RVRK 244 (529)
T ss_pred eehhh------------hcchhh------------------------------hhhee------------------eecc
Confidence 11111 001000 00000 0123
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
..|..+|..++..... ..+.+||+.....++.+...|...|+....+.|++.+..|..-+.+|+..... +|++|+.
T Consensus 245 a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~---~lvvTdv 320 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS---ILVVTDV 320 (529)
T ss_pred HHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccc---eEEEehh
Confidence 4466666666665443 55899999999999999999999999999999999999999999999987665 8999999
Q ss_pred cccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCC
Q 003311 503 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 553 (832)
Q Consensus 503 gg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~s 553 (832)
+.+|++++-.++||.||.|-.+..+.+|.||+.|.|.+ -..|-||+..-
T Consensus 321 aaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~~ 369 (529)
T KOG0337|consen 321 AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVASTD 369 (529)
T ss_pred hhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEeccc
Confidence 99999999999999999999999999999999998854 46777777653
No 124
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.46 E-value=2.1e-13 Score=118.03 Aligned_cols=81 Identities=37% Similarity=0.499 Sum_probs=75.7
Q ss_pred HHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhc
Q 003311 455 ILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRA 534 (832)
Q Consensus 455 iL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRa 534 (832)
.+..+|...++.+..++|+++.++|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677788889999999999999999999999998765 4789999999999999999999999999999999999999
Q ss_pred cccC
Q 003311 535 HRIG 538 (832)
Q Consensus 535 hRiG 538 (832)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 125
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.44 E-value=3.3e-11 Score=133.96 Aligned_cols=127 Identities=24% Similarity=0.243 Sum_probs=106.3
Q ss_pred HHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccC
Q 003311 433 LPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTA 512 (832)
Q Consensus 433 L~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~a 512 (832)
+....+.|.||||-+-...|++-|.+||...|+++..+|.....-+|.++|.+.+.|..+ +|+-...+-+||||+.+
T Consensus 439 I~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLREGLDiPEV 515 (663)
T COG0556 439 IRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLREGLDLPEV 515 (663)
T ss_pred HHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhhccCCCcce
Confidence 334446789999999999999999999999999999999999999999999999998876 78899999999999999
Q ss_pred CeEEEeCCC-----CChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 003311 513 DTVIIFDSD-----WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563 (832)
Q Consensus 513 d~VI~~D~~-----wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~ 563 (832)
+.|.++|.+ -+-...+|-+|||.|--..+ |..|-=...+|+.+.|-+-..
T Consensus 516 sLVAIlDADKeGFLRse~SLIQtIGRAARN~~Gk-vIlYAD~iT~sM~~Ai~ET~R 570 (663)
T COG0556 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGK-VILYADKITDSMQKAIDETER 570 (663)
T ss_pred eEEEEeecCccccccccchHHHHHHHHhhccCCe-EEEEchhhhHHHHHHHHHHHH
Confidence 999999998 48889999999999954444 444433344666666655433
No 126
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.43 E-value=1e-11 Score=150.94 Aligned_cols=346 Identities=18% Similarity=0.177 Sum_probs=206.7
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHh-cCCCCCEEEEeCC-CchHHHHHHHHhhCCCc
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN-KGVTGPHVIVAPK-AVLPNWINEFSTWAPSI 190 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~-~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~ 190 (832)
...+++|..++++.......+.-++|..+||.|||..++.++.+.... ......++.|.|. +++.+-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 466999999999999877666578999999999999999888887776 3345677888886 55666778888877544
Q ss_pred eEEEE--cCChhHHHHHHHHH---H-------hhcCCccEEe-cCHHHHHHh-----HHHHhhcCceEEEEeCCcccCCh
Q 003311 191 AAVVY--DGRPDERKAMREEF---F-------SERGRFNVLI-THYDLIMRD-----RQYLKKVQWIYMIVDEGHRLKNH 252 (832)
Q Consensus 191 ~v~~~--~g~~~~r~~~~~~~---~-------~~~~~~dVvI-tTye~l~~d-----~~~L~~~~w~~vIiDEaHriKN~ 252 (832)
.+... +|.....-...... . ....-+.+.+ ++.+.+... ...+..+.-.++|+||+|-+-..
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 44333 44433221111100 0 0001112222 222322210 11144455668999999998655
Q ss_pred -hhH-HHHHHHcc--ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHH
Q 003311 253 -ECA-LAKTISGY--QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRR 328 (832)
Q Consensus 253 -~sk-~~kal~~l--~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~ 328 (832)
... +...+..+ .....+++|||+- ..|.+.+...+.......
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP----------------------~~~~~~l~~~~~~~~~~~------------ 399 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLP----------------------PFLKEKLKKALGKGREVV------------ 399 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCC----------------------HHHHHHHHHHHhccccee------------
Confidence 222 33333333 4678899999972 122221111100000000
Q ss_pred HHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCcccc
Q 003311 329 LHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFV 408 (832)
Q Consensus 329 L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~ 408 (832)
......|. ++.|.+..
T Consensus 400 ---------------~~~~~~~~-------------------------------------------------~~e~~~~~ 415 (733)
T COG1203 400 ---------------ENAKFCPK-------------------------------------------------EDEPGLKR 415 (733)
T ss_pred ---------------cccccccc-------------------------------------------------cccccccc
Confidence 00000000 01111111
Q ss_pred ccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcC
Q 003311 409 GEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNA 488 (832)
Q Consensus 409 ~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~ 488 (832)
...... ...+. ..+......-...|.+|+|-++.+..+..+...|+..+.+++.+|+..+..+|.+.++....
T Consensus 416 ~~~~~~------~~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~ 488 (733)
T COG1203 416 KERVDV------EDGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKK 488 (733)
T ss_pred ccchhh------hhhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHH
Confidence 000000 00000 12222333334568999999999999999999999888889999999999999998885442
Q ss_pred ---CCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccC--CcCcEEEEEEEeCCCHHHHHHHHHH
Q 003311 489 ---PDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIG--QKKEVRVFVLVSVGSIEEVILERAK 563 (832)
Q Consensus 489 ---~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiG--Q~k~V~V~rLit~~siEe~Il~~~~ 563 (832)
.+.. .++|+|.+...|+|+. .|.+|- | .--....+||.||++|-| ....+.||-..-......+.++...
T Consensus 489 ~~~~~~~--~IvVaTQVIEagvDid-fd~mIT-e-~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~ 563 (733)
T COG1203 489 LFKQNEG--FIVVATQVIEAGVDID-FDVLIT-E-LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLE 563 (733)
T ss_pred HHhccCC--eEEEEeeEEEEEeccc-cCeeee-c-CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcch
Confidence 1211 3799999999999976 555543 2 223456799999999999 4555888888877777777776665
Q ss_pred HHHHH
Q 003311 564 QKMGI 568 (832)
Q Consensus 564 ~K~~l 568 (832)
.++..
T Consensus 564 ~~~~~ 568 (733)
T COG1203 564 KKLKS 568 (733)
T ss_pred hhhcc
Confidence 55433
No 127
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.42 E-value=4.6e-12 Score=150.95 Aligned_cols=300 Identities=24% Similarity=0.299 Sum_probs=176.9
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCC--------CCCEEEEeC-CCchHHHHHHHH
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--------TGPHVIVAP-KAVLPNWINEFS 184 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~--------~~p~LIV~P-~sll~qW~~E~~ 184 (832)
.|.+.|-....-.+ ....|-+||.++|.|||..|+.-|..-+..+.. ...+..|+| ..|+..|...|.
T Consensus 309 sLNrIQS~v~daAl---~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 309 SLNRIQSKVYDAAL---RGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred hhhHHHHHHHHHHh---cCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 45555554433222 234566899999999999987555443333211 235678999 588899999999
Q ss_pred hhCCCc--eEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHH---HHh---HHHHhhcCceEEEEeCCcccC-ChhhH
Q 003311 185 TWAPSI--AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI---MRD---RQYLKKVQWIYMIVDEGHRLK-NHECA 255 (832)
Q Consensus 185 k~~p~~--~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l---~~d---~~~L~~~~w~~vIiDEaHriK-N~~sk 255 (832)
++...+ .|.-..|....-.. .+ ..-+|++||.|.. .+. ..+.. -+.++||||.|.+- ++++.
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~---qi----eeTqVIV~TPEK~DiITRk~gdraY~q--lvrLlIIDEIHLLhDdRGpv 456 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKE---QI----EETQVIVTTPEKWDIITRKSGDRAYEQ--LVRLLIIDEIHLLHDDRGPV 456 (1674)
T ss_pred hhccccCcEEEEecccccchhh---hh----hcceeEEeccchhhhhhcccCchhHHH--HHHHHhhhhhhhcccccchH
Confidence 998654 44445554322111 11 3557999997754 221 12221 24579999999993 33333
Q ss_pred H----HHHHHcc----ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHH
Q 003311 256 L----AKTISGY----QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIR 327 (832)
Q Consensus 256 ~----~kal~~l----~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~ 327 (832)
+ .+..+.. ...+.++||||- -|..|.-+.|..-.+++|-.... |..
T Consensus 457 LESIVaRt~r~ses~~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf~fd~s----yRp-------------------- 510 (1674)
T KOG0951|consen 457 LESIVARTFRRSESTEEGSRLVGLSATL--PNYEDVASFLRVDPEGLFYFDSS----YRP-------------------- 510 (1674)
T ss_pred HHHHHHHHHHHhhhcccCceeeeecccC--CchhhhHHHhccCcccccccCcc----cCc--------------------
Confidence 3 2333222 244679999995 24455555443333444422111 110
Q ss_pred HHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHH------HHHHHHHHhcccccccCCCcchhHHHHHHHHHHhh
Q 003311 328 RLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQK------VYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCC 401 (832)
Q Consensus 328 ~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~------~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~c 401 (832)
.|-+.+++=--.-.+..+ ..|+.+
T Consensus 511 ---------------------vPL~qq~Igi~ek~~~~~~qamNe~~yeKV----------------------------- 540 (1674)
T KOG0951|consen 511 ---------------------VPLKQQYIGITEKKPLKRFQAMNEACYEKV----------------------------- 540 (1674)
T ss_pred ---------------------CCccceEeccccCCchHHHHHHHHHHHHHH-----------------------------
Confidence 122222111111111111 222222
Q ss_pred CCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecch----hHHHHHH----------HHHH------
Q 003311 402 NHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMT----RLMDILE----------IYLK------ 461 (832)
Q Consensus 402 nhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~----~~ldiL~----------~~L~------ 461 (832)
+... ..+.||||.+++ .++..|. .+++
T Consensus 541 -------------------------------m~~a--gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~ 587 (1674)
T KOG0951|consen 541 -------------------------------LEHA--GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASR 587 (1674)
T ss_pred -------------------------------HHhC--CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchh
Confidence 2221 225677777664 2333333 2221
Q ss_pred -----------------hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE-----eC
Q 003311 462 -----------------LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII-----FD 519 (832)
Q Consensus 462 -----------------~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~-----~D 519 (832)
...+.+...|.+++..+|...-+.|..+... +|+||.....|+||+ |++||+ ||
T Consensus 588 eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iq---vlvstatlawgvnlp-ahtViikgtqvy~ 663 (1674)
T KOG0951|consen 588 EILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQ---VLVSTATLAWGVNLP-AHTVIIKGTQVYD 663 (1674)
T ss_pred hhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCcee---EEEeehhhhhhcCCC-cceEEecCccccC
Confidence 1235688899999999999999999998765 799999999999998 577877 66
Q ss_pred CC---C---ChhhHHHHhhhccccC
Q 003311 520 SD---W---NPQMDQQAEDRAHRIG 538 (832)
Q Consensus 520 ~~---w---Np~~~~QAigRahRiG 538 (832)
|. | +|....|+.|||+|.+
T Consensus 664 pekg~w~elsp~dv~qmlgragrp~ 688 (1674)
T KOG0951|consen 664 PEKGRWTELSPLDVMQMLGRAGRPQ 688 (1674)
T ss_pred cccCccccCCHHHHHHHHhhcCCCc
Confidence 64 4 7899999999999986
No 128
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.42 E-value=2.2e-12 Score=127.89 Aligned_cols=157 Identities=17% Similarity=0.284 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCC--ceEE
Q 003311 117 AYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS--IAAV 193 (832)
Q Consensus 117 ~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~--~~v~ 193 (832)
|+|.+++.-+.. +.+.++..++|+|||..++..+...+... ..+.+||++|. .++.|-..++..++.. ..+.
T Consensus 2 ~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 899999987774 77789999999999999886666555443 34589999996 6888888899988754 5666
Q ss_pred EEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCCh--hhHHHHHHHcc---ccc
Q 003311 194 VYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTISGY---QIQ 266 (832)
Q Consensus 194 ~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~--~sk~~kal~~l---~~~ 266 (832)
.+.|...........+ ...++|+|+|++.+...... +.-...++||+||+|.+... .......+..+ ...
T Consensus 77 ~~~~~~~~~~~~~~~~---~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 77 LLHGGQSISEDQREVL---SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp EESTTSCHHHHHHHHH---HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred cccccccccccccccc---cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 6666443221111111 15789999999999876553 11234789999999999652 33344444443 346
Q ss_pred eEEEeeccCCCCCHHH
Q 003311 267 RRLLLTGTPIQNSLQE 282 (832)
Q Consensus 267 ~rllLTGTPlqN~l~E 282 (832)
+.+++||||- .+++.
T Consensus 154 ~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 154 QIILLSATLP-SNVEK 168 (169)
T ss_dssp EEEEEESSST-HHHHH
T ss_pred cEEEEeeCCC-hhHhh
Confidence 7999999996 54443
No 129
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.40 E-value=4.4e-12 Score=130.20 Aligned_cols=155 Identities=16% Similarity=0.177 Sum_probs=107.5
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHH-HHHHHHHhc-CCCCCEEEEeCC-CchHHHHHHHHhhCC--
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIA-LIAYLLENK-GVTGPHVIVAPK-AVLPNWINEFSTWAP-- 188 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaia-li~~l~~~~-~~~~p~LIV~P~-sll~qW~~E~~k~~p-- 188 (832)
.|++||.+++.-+.. +.+.+++.++|+|||++.+. ++..+.... ...+.+|||+|. .++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 689999999987776 78899999999999998544 444444431 234568999996 688889998888864
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCChh--hHHHHHHHccc
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ 264 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~~--sk~~kal~~l~ 264 (832)
+..+..+.|.......... . . ...+|+|+|.+.+...... +.-..+.++|+||+|.+.+.. ..+...+..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~-~-~--~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~ 172 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRK-L-K--RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP 172 (203)
T ss_pred CceEEEEECCCCHHHHHHH-h-c--CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCC
Confidence 5667777776554332211 1 1 4678999999887653221 112356899999999986543 22333334454
Q ss_pred -cceEEEeeccCC
Q 003311 265 -IQRRLLLTGTPI 276 (832)
Q Consensus 265 -~~~rllLTGTPl 276 (832)
....+++||||-
T Consensus 173 ~~~~~~~~SAT~~ 185 (203)
T cd00268 173 KDRQTLLFSATMP 185 (203)
T ss_pred cccEEEEEeccCC
Confidence 467899999986
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=2.6e-10 Score=133.44 Aligned_cols=388 Identities=17% Similarity=0.166 Sum_probs=219.0
Q ss_pred CCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHH----HHHHHHhh
Q 003311 111 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN----WINEFSTW 186 (832)
Q Consensus 111 ~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~q----W~~E~~k~ 186 (832)
.|..+++-|+-|..-|+. |-|.-..||-|||+++...+...... ...+-||+|+..|.. |...+-.+
T Consensus 75 lg~r~ydvQlig~l~Ll~------G~VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 75 LGLRPFDVQLLGALRLLA------GDVIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred cCCCcchHHHHHHHHHhC------CCcccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 356888889988866653 45777999999999986554433332 346788899877643 77777777
Q ss_pred CCCceEEEEcCChh--HHHHHHHHHHhhcCCccEEecCHH-----HHHHh----HHHHhhcCceEEEEeCCcccCChhhH
Q 003311 187 APSIAAVVYDGRPD--ERKAMREEFFSERGRFNVLITHYD-----LIMRD----RQYLKKVQWIYMIVDEGHRLKNHECA 255 (832)
Q Consensus 187 ~p~~~v~~~~g~~~--~r~~~~~~~~~~~~~~dVvItTye-----~l~~d----~~~L~~~~w~~vIiDEaHriKN~~sk 255 (832)
+ ++.+.+..+... +|+.. -.+||+.+|-. +++.. ........+.++||||+..+.=.
T Consensus 146 L-GLsvg~i~~~~~~~err~a--------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLID--- 213 (764)
T PRK12326 146 L-GLTVGWITEESTPEERRAA--------YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVD--- 213 (764)
T ss_pred c-CCEEEEECCCCCHHHHHHH--------HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheec---
Confidence 6 567776665432 22222 34677777733 33322 22233457889999999865321
Q ss_pred HHHHHHccccceEEEeeccCC-CCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHH----------
Q 003311 256 LAKTISGYQIQRRLLLTGTPI-QNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLL---------- 324 (832)
Q Consensus 256 ~~kal~~l~~~~rllLTGTPl-qN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~---------- 324 (832)
.+..-+++||.+- ++.+..++.+..-|.++.. |... .....+.+++.....
T Consensus 214 --------eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~d---------y~id-e~~k~v~LTe~G~~~~e~~l~~~~l 275 (764)
T PRK12326 214 --------EALVPLVLAGSTPGEAPRGEIAELVRRLREGKD---------YEID-DDGRNVHLTDKGARKVEKALGGIDL 275 (764)
T ss_pred --------cccCceeeeCCCcchhHHHHHHHHHHhcCcCCc---------EEEE-cCCCeeEecHHHHHHHHHHcCCccc
Confidence 2455688888653 2333334444444433210 0000 001112222211111
Q ss_pred --------HHHHHHhhhhhh-hhhhhHhHHhhcCCCCeEEEEEcCCC-------HHHHHHHHHHHHhcccccccCCC--c
Q 003311 325 --------IIRRLHHVIRPF-ILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGLDTGTG--K 386 (832)
Q Consensus 325 --------~~~~L~~~L~pf-llRR~k~dv~~~LP~k~e~~v~~~ms-------~~Q~~lY~~i~~~~~~~~~~~~~--~ 386 (832)
.+..+...|+-. ++.+ ++.- +-...++++--+.| .++.-+-+.+..+....+..... .
T Consensus 276 y~~~~~~~~~~~i~~AL~A~~l~~~---d~dY-iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~A 351 (764)
T PRK12326 276 YSEEHVGTTLTQVNVALHAHALLQR---DVHY-IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLD 351 (764)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHhc---CCcE-EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeee
Confidence 111122122111 1111 1110 00011111111111 23333444444333222221111 1
Q ss_pred chhHHHH-----------------HHHHHHhhCCCccccccccchh-----hHHHHhhcchHHHHHHHHHhhhhcCCeEE
Q 003311 387 SKSLQNL-----------------SMQLRKCCNHPYLFVGEYNMWR-----KEEIIRASGKFELLDRLLPKLRKSGHRVL 444 (832)
Q Consensus 387 ~~~l~~~-----------------~~~LRk~cnhP~l~~~~~~~~~-----~~~l~~~S~Kl~~L~~lL~~l~~~g~kvL 444 (832)
.-+++++ ...++++.+-+.+..+...+.. ..-......|+.++.+-+.++.+.|..||
T Consensus 352 sIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVL 431 (764)
T PRK12326 352 TITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVL 431 (764)
T ss_pred hhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 1122222 2245555555444333221111 00112345689999999999999999999
Q ss_pred EEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccC------------
Q 003311 445 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTA------------ 512 (832)
Q Consensus 445 IFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~a------------ 512 (832)
|.|.+....+.|..+|...|+++..|+.... ++-.++|.+- |... .+-|+|..+|+|-|+.-.
T Consensus 432 Vgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~ 506 (764)
T PRK12326 432 VGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--GKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAE 506 (764)
T ss_pred EEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--CCCC--cEEEEecCCCCccCeecCCCcccchHHHHH
Confidence 9999999999999999999999999998644 3335555543 2222 378999999999887633
Q ss_pred ---CeEEEeCCCCChhhHHHHhhhccccCCcCcEEEE
Q 003311 513 ---DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 513 ---d~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
=+||.-..+-|-..+.|..||++|.|..-..+.|
T Consensus 507 ~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 507 LGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred cCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 3889899999999999999999999987765554
No 131
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=1.6e-10 Score=138.27 Aligned_cols=120 Identities=16% Similarity=0.276 Sum_probs=97.7
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
...|+.++.+-+..+.+.|..|||-|.+....+.|..+|...|+++..|+.... +.-.++|.. +|... .+.|+|.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~--AG~~g--~VTIATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG--AGKLG--AVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh--cCCCC--cEEEeec
Confidence 357899999999999999999999999999999999999999999999988633 222345543 33322 4799999
Q ss_pred ccccccCcccC--------CeEEEeCCCCChhhHHHHhhhccccCCcCcEEEE
Q 003311 502 AGGLGLNLQTA--------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 502 agg~GLNL~~a--------d~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
.+|+|-|+.-. =+||.-..+-|...+.|..||++|.|..-....|
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999886543 3789999999999999999999999987664443
No 132
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.27 E-value=1.8e-10 Score=134.85 Aligned_cols=361 Identities=18% Similarity=0.169 Sum_probs=204.6
Q ss_pred CCcCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHH-HHHHHHh
Q 003311 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN-WINEFST 185 (832)
Q Consensus 107 P~~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~q-W~~E~~k 185 (832)
|......+|-.+|++++..|.. +-..++|.-|..|||++|=+.|+-...+ ..+++.-.|...+.| =.++|+.
T Consensus 290 ~a~~~pFelD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAialaq~h---~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 290 MALIYPFELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIALAQKH---MTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred HHhhCCCCccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHHHHhh---ccceEecchhhhhccchHHHHHH
Confidence 3344557999999999976665 8888999999999999985555432222 346788899655554 5588888
Q ss_pred hCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh----HHHHhhcCceEEEEeCCcccCChh--hHHHHH
Q 003311 186 WAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD----RQYLKKVQWIYMIVDEGHRLKNHE--CALAKT 259 (832)
Q Consensus 186 ~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d----~~~L~~~~w~~vIiDEaHriKN~~--sk~~ka 259 (832)
-|.+.. +..|...-. ....++|+|-+++++- .+.+.. ..+||+||+|.+.+.. .-.-..
T Consensus 363 tF~Dvg--LlTGDvqin-----------PeAsCLIMTTEILRsMLYrgadliRD--vE~VIFDEVHYiND~eRGvVWEEV 427 (1248)
T KOG0947|consen 363 TFGDVG--LLTGDVQIN-----------PEASCLIMTTEILRSMLYRGADLIRD--VEFVIFDEVHYINDVERGVVWEEV 427 (1248)
T ss_pred hccccc--eeecceeeC-----------CCcceEeehHHHHHHHHhcccchhhc--cceEEEeeeeecccccccccceee
Confidence 776655 556654322 4567999999998764 333444 4559999999996532 222233
Q ss_pred HHccc-cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhh
Q 003311 260 ISGYQ-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFIL 338 (832)
Q Consensus 260 l~~l~-~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfll 338 (832)
+..++ .-..++||||- .+...|..|++..-...-.+..+
T Consensus 428 iIMlP~HV~~IlLSATV--------------------PN~~EFA~WIGRtK~K~IyViST-------------------- 467 (1248)
T KOG0947|consen 428 IIMLPRHVNFILLSATV--------------------PNTLEFADWIGRTKQKTIYVIST-------------------- 467 (1248)
T ss_pred eeeccccceEEEEeccC--------------------CChHHHHHHhhhccCceEEEEec--------------------
Confidence 34443 23559999993 23456788877532211111111
Q ss_pred hhhHhHHhhcCCCCeEEEEEcC--CC----HHHHHHHHHHHHhcc------cccc----cCCCcchhHHHHHHHHHHhhC
Q 003311 339 RRKKDEVEKYLPGKSQVILKCD--MS----AWQKVYYQQVTDVGR------VGLD----TGTGKSKSLQNLSMQLRKCCN 402 (832)
Q Consensus 339 RR~k~dv~~~LP~k~e~~v~~~--ms----~~Q~~lY~~i~~~~~------~~~~----~~~~~~~~l~~~~~~LRk~cn 402 (832)
. .-|-.-++.+++. +- ....-++..+..... .... .+.+... -+. .-..
T Consensus 468 --~------kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rg-s~~------~ggk 532 (1248)
T KOG0947|consen 468 --S------KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRG-SQK------RGGK 532 (1248)
T ss_pred --C------CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccccccc-ccc------cCCc
Confidence 0 1244445555555 11 111112221111000 0000 0000000 000 0000
Q ss_pred CCccccccccchhhHHHHhhcchHHHHHHHHHhhhh-cCCeEEEEecchhHHHHHHHHHHhCCC----------------
Q 003311 403 HPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDF---------------- 465 (832)
Q Consensus 403 hP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~-~g~kvLIFsq~~~~ldiL~~~L~~~g~---------------- 465 (832)
.++-..+... ...-....|-.....++..+.. .--.+||||-...-+|.-.++|...++
T Consensus 533 ~~~~~g~~r~----~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~ 608 (1248)
T KOG0947|consen 533 TNYHNGGSRG----SGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKA 608 (1248)
T ss_pred CCCCCCCccc----ccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 0000000000 0000001111234445555543 335799999988888888877764332
Q ss_pred -----------------------eEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCC--
Q 003311 466 -----------------------KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDS-- 520 (832)
Q Consensus 466 -----------------------~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~-- 520 (832)
.+...||+.=+--++-+---|+.|-.+ +|.+|...+.|+|+++ .+|||-..
T Consensus 609 ~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVK---VLFATETFAMGVNMPA-RtvVF~Sl~K 684 (1248)
T KOG0947|consen 609 VARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVK---VLFATETFAMGVNMPA-RTVVFSSLRK 684 (1248)
T ss_pred HHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceE---EEeehhhhhhhcCCCc-eeEEeeehhh
Confidence 144556666555555555667776544 7999999999999985 45555333
Q ss_pred -------CCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 521 -------DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 521 -------~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
.-+|..|.|..|||+|-|=...-+|+-++...
T Consensus 685 hDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 685 HDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred ccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 35899999999999999987776666555543
No 133
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.26 E-value=1.1e-10 Score=126.44 Aligned_cols=208 Identities=23% Similarity=0.314 Sum_probs=128.1
Q ss_pred eEEEEEcCCCHHHHHHHHHHHHhcccccc----cCCC-----------cchhHHHHHHHHHHhhCCCccccccccc----
Q 003311 353 SQVILKCDMSAWQKVYYQQVTDVGRVGLD----TGTG-----------KSKSLQNLSMQLRKCCNHPYLFVGEYNM---- 413 (832)
Q Consensus 353 ~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~----~~~~-----------~~~~l~~~~~~LRk~cnhP~l~~~~~~~---- 413 (832)
.++.+.++|+..|+++|+.+.......+. .... ....+..+..+|+.+|+||+|....+.+
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 36788899999999999988764332221 1111 1144556677899999999998776533
Q ss_pred --hhhHHHHhhcchHHHHHHHHHhh-----hhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHH---
Q 003311 414 --WRKEEIIRASGKFELLDRLLPKL-----RKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLL--- 483 (832)
Q Consensus 414 --~~~~~l~~~S~Kl~~L~~lL~~l-----~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i--- 483 (832)
...+.+...|+||.+|.+++..+ ...+.++||.|+...++|+|+.+|...++.|.|++|..-.++....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 22566788999999999999999 77788999999999999999999999999999999976554433222
Q ss_pred ---------Hhh-cCCCCCceEEEEeccccccc----cCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEE
Q 003311 484 ---------KQF-NAPDSPYFMFLLSTRAGGLG----LNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLV 549 (832)
Q Consensus 484 ---------~~F-n~~~~~~~v~LlSt~agg~G----LNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLi 549 (832)
... ..+....+++|+++.-.... ++-...|.||-||+.+++....-..-|.+.-.+ +.+-|++||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv 242 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLV 242 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEe
Confidence 011 12233566777777654442 333457999999999998876444444443223 789999999
Q ss_pred eCCCHHHHHHHH
Q 003311 550 SVGSIEEVILER 561 (832)
Q Consensus 550 t~~siEe~Il~~ 561 (832)
..+|+|.-++..
T Consensus 243 ~~nSiEHi~L~~ 254 (297)
T PF11496_consen 243 PSNSIEHIELCF 254 (297)
T ss_dssp ETTSHHHHHHHH
T ss_pred eCCCHHHHHHHc
Confidence 999999988765
No 134
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.24 E-value=1.2e-09 Score=135.27 Aligned_cols=88 Identities=14% Similarity=0.244 Sum_probs=63.2
Q ss_pred HHHHHHhh-hhcCCeEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 429 LDRLLPKL-RKSGHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 429 L~~lL~~l-~~~g~kvLIFsq~~~~ldiL~~~L~~----~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
+.+.|.++ ...+.++|||+.+..+++.+...|.. .++.+. ..+.. ..|..++++|+.+... +|++|...
T Consensus 662 ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~---iLlgt~sf 735 (850)
T TIGR01407 662 IASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKA---ILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCe---EEEEccee
Confidence 34444343 33567899999999999999998864 344433 23322 4789999999986544 68889999
Q ss_pred ccccCccc--CCeEEEeCCCC
Q 003311 504 GLGLNLQT--ADTVIIFDSDW 522 (832)
Q Consensus 504 g~GLNL~~--ad~VI~~D~~w 522 (832)
.+|||++. ...||+.-.|+
T Consensus 736 ~EGVD~~g~~l~~viI~~LPf 756 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLPF 756 (850)
T ss_pred ecccccCCCceEEEEEeCCCC
Confidence 99999997 45777776664
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=5e-09 Score=125.67 Aligned_cols=396 Identities=16% Similarity=0.197 Sum_probs=214.3
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHH----HHHHHHhhC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN----WINEFSTWA 187 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~q----W~~E~~k~~ 187 (832)
|-..++-|+-|.--| +.|-|.-+.||.|||++|...+ ++.... ...+-||+|+..|.. |...+-.++
T Consensus 80 Gm~~ydVQliGg~~L------h~G~iaEM~TGEGKTLvA~l~a-~l~al~--G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 80 GMRHFDVQLIGGMTL------HEGKIAEMRTGEGKTLVGTLAV-YLNALS--GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred CCCcchhHHHhhhHh------ccCccccccCCCCChHHHHHHH-HHHHHc--CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 457777888775433 3455777999999999764333 332221 246788899876643 666666665
Q ss_pred CCceEEEEcCCh--hHHHHHHHHHHhhcCCccEEecCHHHH-----HHhH----HHHhhcCceEEEEeCCcccCChhhHH
Q 003311 188 PSIAAVVYDGRP--DERKAMREEFFSERGRFNVLITHYDLI-----MRDR----QYLKKVQWIYMIVDEGHRLKNHECAL 256 (832)
Q Consensus 188 p~~~v~~~~g~~--~~r~~~~~~~~~~~~~~dVvItTye~l-----~~d~----~~L~~~~w~~vIiDEaHriKN~~sk~ 256 (832)
++.|.++.+.. .+|+.. -..+|++.|...+ .... .......+.++||||+|.+.=.
T Consensus 151 -Gl~v~~i~~~~~~~err~~--------Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLID---- 217 (913)
T PRK13103 151 -GLSVGIVTPFQPPEEKRAA--------YAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILID---- 217 (913)
T ss_pred -CCEEEEECCCCCHHHHHHH--------hcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheecc----
Confidence 57777776643 333322 3478999887664 3221 1122357889999999987421
Q ss_pred HHHHHccccceEEEeeccCCCC--CHHHHHHHHhccCCCCCCChHHH--HHHhcccccccCcccCChHHHHHHHH-----
Q 003311 257 AKTISGYQIQRRLLLTGTPIQN--SLQELWSLLNFLLPTIFNSVENF--EEWFNAPFKDRGQVALTDEEQLLIIR----- 327 (832)
Q Consensus 257 ~kal~~l~~~~rllLTGTPlqN--~l~EL~sLl~fL~p~~f~~~~~F--~~~f~~~~~~~~~~~~~~ee~~~~~~----- 327 (832)
.+..-|++||.+-.. -...++.++.-|...+-.....+ ...|... .....+.+++.....+-.
T Consensus 218 -------EArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~id-ek~~~v~LTe~G~~~~e~~~~~~ 289 (913)
T PRK13103 218 -------EARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTID-EKTRQVELNEAGHQFIEEMLTQA 289 (913)
T ss_pred -------ccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEE-cCCCeeeechHHHHHHHHHhhhC
Confidence 233347888754221 12223333333321100000000 0001000 011122333332211111
Q ss_pred ----------------HHHhh---hhhh-hhhhhHhHHhhcCCCCeEEEEEcCCC-------HHHHHHHHHHHHhccccc
Q 003311 328 ----------------RLHHV---IRPF-ILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGL 380 (832)
Q Consensus 328 ----------------~L~~~---L~pf-llRR~k~dv~~~LP~k~e~~v~~~ms-------~~Q~~lY~~i~~~~~~~~ 380 (832)
.+|.+ |+-. ++.+ ++.--+-+....+|. +.| .++.-+-+.+..+....+
T Consensus 290 ~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~---d~dYiV~dg~V~IVD-e~TGR~m~grrwsdGLHQaIEaKE~v~I 365 (913)
T PRK13103 290 GLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHR---NVEYIVQDGQVLLID-EHTGRTMPGRRLSEGLHQAIEAKENLNI 365 (913)
T ss_pred CCcccchhccChhhhHHHHHHHHHHHHHHHHhc---CCcEEEECCEEEEEE-CCCCCcCCCCccchHHHHHHHHHcCCCc
Confidence 11111 1110 1111 110000011111111 111 133334444443333322
Q ss_pred ccCC--CcchhHHHHH-----------------HHHHHhhCCCccccccccchh-----hHHHHhhcchHHHHHHHHHhh
Q 003311 381 DTGT--GKSKSLQNLS-----------------MQLRKCCNHPYLFVGEYNMWR-----KEEIIRASGKFELLDRLLPKL 436 (832)
Q Consensus 381 ~~~~--~~~~~l~~~~-----------------~~LRk~cnhP~l~~~~~~~~~-----~~~l~~~S~Kl~~L~~lL~~l 436 (832)
.... -..-.++|++ ..+.++.+-+.+..+...+.. +.-......|+.++.+-+..+
T Consensus 366 ~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~ 445 (913)
T PRK13103 366 QAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKEC 445 (913)
T ss_pred CCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHH
Confidence 2111 1112233322 234555554444433222111 011123457999999999999
Q ss_pred hhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcc------
Q 003311 437 RKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ------ 510 (832)
Q Consensus 437 ~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~------ 510 (832)
.+.|..|||-+.+....+.|..+|...|+++-.|+.... ++-.++|. ++|... .+-|+|..+|+|-|+.
T Consensus 446 ~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~G--aVTIATNMAGRGTDIkLg~n~~ 520 (913)
T PRK13103 446 MALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRPG--ALTIATNMAGRGTDILLGGNWE 520 (913)
T ss_pred HhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCCC--cEEEeccCCCCCCCEecCCchH
Confidence 999999999999999999999999999999988877533 33344555 344433 4789999999998874
Q ss_pred -------------------------------cCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEE
Q 003311 511 -------------------------------TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 511 -------------------------------~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
+-=+||.-..+-|-..+.|..||++|.|..-....|
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 587 (913)
T PRK13103 521 VEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFY 587 (913)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE
Confidence 223789999999999999999999999987665544
No 136
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=1.4e-08 Score=120.70 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=99.3
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHH-HHHHhhcCCCCCceEEEEec
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERG-TLLKQFNAPDSPYFMFLLST 500 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~-~~i~~Fn~~~~~~~v~LlSt 500 (832)
...|+.++.+-+..+.+.|..|||.|.+....+.|..+|...|+++..|+.... +++ .+|. ++|... .+.|+|
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa--~AG~~G--aVTIAT 481 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA--KAGQKG--AITIAT 481 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH--hCCCCC--eEEEec
Confidence 457899999999999999999999999999999999999999999999998533 344 3444 444433 478999
Q ss_pred cccccccCcccCC--------eEEEeCCCCChhhHHHHhhhccccCCcCcEEEE
Q 003311 501 RAGGLGLNLQTAD--------TVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 501 ~agg~GLNL~~ad--------~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
..+|+|-|+.-.. +||..+.+-|-..+.|..||++|.|..-..+.|
T Consensus 482 NMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred ccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 9999999987544 899999999999999999999999987665544
No 137
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.15 E-value=1.5e-08 Score=120.55 Aligned_cols=323 Identities=19% Similarity=0.253 Sum_probs=176.2
Q ss_pred CCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC-
Q 003311 111 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP- 188 (832)
Q Consensus 111 ~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p- 188 (832)
.|..|...|.- |+..... +..--+..+||+|||.-.+....++...+ ++.+||+|+ .|+.|-.+-+.++.+
T Consensus 79 ~G~~~ws~QR~---WakR~~r-g~SFaiiAPTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 79 TGFRPWSAQRV---WAKRLVR-GKSFAIIAPTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred hCCCchHHHHH---HHHHHHc-CCceEEEcCCCCchhHHHHHHHHHHHhcC---CeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 35588888975 5544443 44444556899999976655555554432 588999997 556777788888863
Q ss_pred ----CceEEEEcCC--hhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHc
Q 003311 189 ----SIAAVVYDGR--PDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG 262 (832)
Q Consensus 189 ----~~~v~~~~g~--~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~ 262 (832)
...++ ||+. ..+++.....+.. ++|||+|||-..+.+..+.|.+.+|++|+||.+.-+--.+
T Consensus 152 ~~~~~~~~~-yh~~l~~~ekee~le~i~~--gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~Lkas--------- 219 (1187)
T COG1110 152 AGSLDVLVV-YHSALPTKEKEEALERIES--GDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKAS--------- 219 (1187)
T ss_pred cCCcceeee-eccccchHHHHHHHHHHhc--CCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhcc---------
Confidence 33444 8886 3444455555444 7999999999999999999999999999999987542110
Q ss_pred cccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhH
Q 003311 263 YQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 342 (832)
Q Consensus 263 l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k 342 (832)
.|.+-+..|+.|-...+ ++...+...... .. ......++.+.++-.-.++.+
T Consensus 220 ---------------kNvDriL~LlGf~eE~i-~~a~~~~~lr~~-~~-----------~~~~~~~~~e~~~~~e~~~~~ 271 (1187)
T COG1110 220 ---------------KNVDRLLRLLGFSEEVI-ESAYELIKLRRK-LY-----------GEKRAERVREELREVEREREK 271 (1187)
T ss_pred ---------------ccHHHHHHHcCCCHHHH-HHHHHHHHHHHH-hh-----------hhhhHHHHHHHHHHHHHHHHH
Confidence 12222223332210000 000000000000 00 000011111111110000000
Q ss_pred hHHhhcCCCCeEEEEEcCCC--HHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHH
Q 003311 343 DEVEKYLPGKSQVILKCDMS--AWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 420 (832)
Q Consensus 343 ~dv~~~LP~k~e~~v~~~ms--~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~ 420 (832)
. ..-...-.+-...-. ..-..+|+.++... .+. ... -||.+.. ..
T Consensus 272 ~----r~k~g~LvvsSATg~~rg~R~~LfReLlgFe-----vG~-~~~-------~LRNIvD----------------~y 318 (1187)
T COG1110 272 K----RRKLGILVVSSATGKPRGSRLKLFRELLGFE-----VGS-GGE-------GLRNIVD----------------IY 318 (1187)
T ss_pred h----ccCCceEEEeeccCCCCCchHHHHHHHhCCc-----cCc-cch-------hhhheee----------------ee
Confidence 0 000000000000000 00112233222111 111 000 1222111 01
Q ss_pred hhcchHHHHHHHHHhhhhcCCeEEEEecc---hhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 421 RASGKFELLDRLLPKLRKSGHRVLLFSQM---TRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 421 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~---~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
..++-.+.+.++++++ |.-.|||.+- .+.++.|..+|+..|+++..++. ...+.++.|..|..++-|=+
T Consensus 319 ~~~~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~~GeidvLVGv 390 (1187)
T COG1110 319 VESESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA-----EKEEALEDFEEGEVDVLVGV 390 (1187)
T ss_pred ccCccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec-----cchhhhhhhccCceeEEEEe
Confidence 1124455566677666 5568999998 78999999999999999988876 23678999999887632222
Q ss_pred Ee-ccccccccCccc-CCeEEEeCCC
Q 003311 498 LS-TRAGGLGLNLQT-ADTVIIFDSD 521 (832)
Q Consensus 498 lS-t~agg~GLNL~~-ad~VI~~D~~ 521 (832)
.| ....=+||||+. +..+|++..|
T Consensus 391 AsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 391 ASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cccccceeecCCchhheeEEEEecCC
Confidence 11 233568999997 8999999988
No 138
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.11 E-value=1.4e-09 Score=131.93 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=109.9
Q ss_pred CCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC
Q 003311 110 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 188 (832)
Q Consensus 110 l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 188 (832)
-.+.+|-|+|.+++.-+-. +.+.++|..||.|||+.+-.++..-+..+ ..++...|. .+.+|=.++|..-+.
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler----~esVlV~ApTssGKTvVaeyAi~~al~~~---qrviYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 115 EYPFELDPFQQEAIAILER----GESVLVCAPTSSGKTVVAEYAIALALRDG---QRVIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhC----CCcEEEEccCCCCcchHHHHHHHHHHHcC---CceEeccchhhhhhhHHHHHHHHhh
Confidence 3568999999999965554 88899999999999999987777665543 248999995 666676777766664
Q ss_pred Cc--eEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH----HHHhhcCceEEEEeCCcccCCh--hhHHHHHH
Q 003311 189 SI--AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR----QYLKKVQWIYMIVDEGHRLKNH--ECALAKTI 260 (832)
Q Consensus 189 ~~--~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~----~~L~~~~w~~vIiDEaHriKN~--~sk~~kal 260 (832)
.+ .+-++.|...- .+...++|+|-+++++-. ..+. ....||+||.|.|... +.-.-..+
T Consensus 188 dv~~~vGL~TGDv~I-----------N~~A~clvMTTEILRnMlyrg~~~~~--~i~~ViFDEvHyi~D~eRG~VWEE~I 254 (1041)
T COG4581 188 DVADMVGLMTGDVSI-----------NPDAPCLVMTTEILRNMLYRGSESLR--DIEWVVFDEVHYIGDRERGVVWEEVI 254 (1041)
T ss_pred hhhhhccceecceee-----------CCCCceEEeeHHHHHHHhccCccccc--ccceEEEEeeeeccccccchhHHHHH
Confidence 32 23445553321 145667777778887632 2233 3456999999999653 34444455
Q ss_pred Hccccc-eEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcc
Q 003311 261 SGYQIQ-RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNA 307 (832)
Q Consensus 261 ~~l~~~-~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~ 307 (832)
..++.. +.++||||- ++...|..|++.
T Consensus 255 i~lP~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 255 ILLPDHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred HhcCCCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 555544 789999993 456788888864
No 139
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.10 E-value=4.2e-09 Score=130.77 Aligned_cols=142 Identities=22% Similarity=0.269 Sum_probs=96.8
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC-CCchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHH
Q 003311 132 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 210 (832)
Q Consensus 132 ~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~ 210 (832)
.+.+|++++-+|+|||++++-++..+.+. .....++|||- ..|-.|-.++|..+........ .......+...+.
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~ 347 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLE 347 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHh
Confidence 34579999999999999998887777776 33446677777 4777889999999875544333 2233344444443
Q ss_pred hhcCCccEEecCHHHHHHhHHH----HhhcCceEEEEeCCcccCChhhHHHHHH-HccccceEEEeeccCCCCCHH
Q 003311 211 SERGRFNVLITHYDLIMRDRQY----LKKVQWIYMIVDEGHRLKNHECALAKTI-SGYQIQRRLLLTGTPIQNSLQ 281 (832)
Q Consensus 211 ~~~~~~dVvItTye~l~~d~~~----L~~~~w~~vIiDEaHriKN~~sk~~kal-~~l~~~~rllLTGTPlqN~l~ 281 (832)
. ..-.|+|||-+.|...... ....+.-+||+|||||--. ..+.+.+ ..|+...-++.||||+...-.
T Consensus 348 ~--~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~--G~~~~~~~~~~~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 348 D--GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY--GELAKLLKKALKKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred c--CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc--cHHHHHHHHHhccceEEEeeCCccccccc
Confidence 2 2446999999888654322 2344667899999998633 2333443 455667889999999865433
No 140
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=99.04 E-value=5.5e-11 Score=101.82 Aligned_cols=61 Identities=38% Similarity=0.622 Sum_probs=43.6
Q ss_pred hhhcccccCcCCcccccccCCCchhhhhccccccCCCCcCCCCcccccccccCCCCCHHHHH
Q 003311 637 ENYRSRLMEDHEVPEWAYSAPDNKEEQKGFEKGFGHESSSITGKRKRKEVVYADTLSDLQWM 698 (832)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (832)
..+.+|||+++|||+|+..+......+... .........++|+|+||.|+|+|+|||+|||
T Consensus 14 ~~~p~RLm~e~ELPe~~~~d~~~~~~~~~~-e~~~~~~~~grG~R~RK~V~Y~D~LTEeQwL 74 (74)
T PF14619_consen 14 KPYPSRLMEESELPEWYREDIEEELEKEEE-EEEAETNEYGRGKRERKEVSYDDGLTEEQWL 74 (74)
T ss_pred CCCCccccchhhchHHHHhcchhhhhhhhh-hhccchhhcccccccccccccCCCCCHHHhC
Confidence 346779999999999999877533111100 1000012458999999999999999999996
No 141
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.99 E-value=5.1e-09 Score=120.21 Aligned_cols=358 Identities=17% Similarity=0.172 Sum_probs=190.3
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 191 (832)
.+|-|+|..++. ...++...++..-|..|||+.|=..|+.-+.. +.+++.-.|. .|-.|=.+|+..-|.++
T Consensus 128 F~LDpFQ~~aI~----Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~DV- 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIK----CIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKDV- 199 (1041)
T ss_pred cccCchHhhhhh----hhcCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhccc-
Confidence 589999999984 44567788888889999999986555444333 2478888895 45555667777666443
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh----HHHHhhcCceEEEEeCCcccCChhh--HHHHHHHcc-c
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD----RQYLKKVQWIYMIVDEGHRLKNHEC--ALAKTISGY-Q 264 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d----~~~L~~~~w~~vIiDEaHriKN~~s--k~~kal~~l-~ 264 (832)
-+..|...- ......+|+|-+++++- ...++.+.| ||+||.|.|+...- -.-..+--+ .
T Consensus 200 -GLMTGDVTI-----------nP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~ 265 (1041)
T KOG0948|consen 200 -GLMTGDVTI-----------NPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPD 265 (1041)
T ss_pred -ceeecceee-----------CCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEeccc
Confidence 233332210 04556888998888653 455666777 89999999976332 222333333 3
Q ss_pred cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhH
Q 003311 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344 (832)
Q Consensus 265 ~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~d 344 (832)
.-+-++||||- .+..+|.+|++.- |+.
T Consensus 266 ~vr~VFLSATi--------------------PNA~qFAeWI~~i---------------------hkQ------------ 292 (1041)
T KOG0948|consen 266 NVRFVFLSATI--------------------PNARQFAEWICHI---------------------HKQ------------ 292 (1041)
T ss_pred cceEEEEeccC--------------------CCHHHHHHHHHHH---------------------hcC------------
Confidence 44668999993 3456788887642 111
Q ss_pred HhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhccccccc-CCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhc
Q 003311 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDT-GTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 423 (832)
Q Consensus 345 v~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~-~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S 423 (832)
|.....-...+||+|-.+|-.=-+-.....+. +.-+...++..+.-|+..-..+--.......-.+...-..+
T Consensus 293 ------PcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~ 366 (1041)
T KOG0948|consen 293 ------PCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGP 366 (1041)
T ss_pred ------CceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCC
Confidence 01111111233444433222100000000000 00011223333333333222110000000000000000011
Q ss_pred chHHHHHHHHHhh-hhcCCeEEEEecchhHHHHHHHHHHhCCC-------------------------------------
Q 003311 424 GKFELLDRLLPKL-RKSGHRVLLFSQMTRLMDILEIYLKLNDF------------------------------------- 465 (832)
Q Consensus 424 ~Kl~~L~~lL~~l-~~~g~kvLIFsq~~~~ldiL~~~L~~~g~------------------------------------- 465 (832)
++- -+.++++.+ ......|||||-...-++.++-.+....+
T Consensus 367 ~~s-~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL 445 (1041)
T KOG0948|consen 367 GDS-DIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLL 445 (1041)
T ss_pred Ccc-cHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHH
Confidence 100 122222222 24567899999887666655544432221
Q ss_pred --eEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE-----eCC----CCChhhHHHHhhhc
Q 003311 466 --KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII-----FDS----DWNPQMDQQAEDRA 534 (832)
Q Consensus 466 --~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~-----~D~----~wNp~~~~QAigRa 534 (832)
.+...|++.=+--++-+-=-|+.|-.. +|.+|...+.|||.++ .+|++ ||- |-+...|+|.-|||
T Consensus 446 ~RGIGIHHsGLLPIlKE~IEILFqEGLvK---vLFATETFsiGLNMPA-kTVvFT~~rKfDG~~fRwissGEYIQMSGRA 521 (1041)
T KOG0948|consen 446 RRGIGIHHSGLLPILKEVIEILFQEGLVK---VLFATETFSIGLNMPA-KTVVFTAVRKFDGKKFRWISSGEYIQMSGRA 521 (1041)
T ss_pred HhccccccccchHHHHHHHHHHHhccHHH---HHHhhhhhhhccCCcc-eeEEEeeccccCCcceeeecccceEEecccc
Confidence 123345555554444444567776544 6889999999999885 55655 332 23778899999999
Q ss_pred cccCCcCcEEEEEEEeCCCHHHH
Q 003311 535 HRIGQKKEVRVFVLVSVGSIEEV 557 (832)
Q Consensus 535 hRiGQ~k~V~V~rLit~~siEe~ 557 (832)
+|-|-...-.|+-+| ...++..
T Consensus 522 GRRG~DdrGivIlmi-Dekm~~~ 543 (1041)
T KOG0948|consen 522 GRRGIDDRGIVILMI-DEKMEPQ 543 (1041)
T ss_pred cccCCCCCceEEEEe-cCcCCHH
Confidence 999976655554444 3334433
No 142
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.98 E-value=1.2e-07 Score=113.06 Aligned_cols=155 Identities=21% Similarity=0.184 Sum_probs=109.3
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 191 (832)
..|-+-|..++.-+.+........+|..-||+|||-.-+-+|...+..+ +-+||++|- ++..|-...|...|+ .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 4788999999998888652234458899999999999998888887764 468999995 899999999998886 66
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCccc--CChhh------HHHHHHHcc
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRL--KNHEC------ALAKTISGY 263 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHri--KN~~s------k~~kal~~l 263 (832)
+.++++.-..............+...|||-|...+.--.. +-.+|||||=|.- |..+. -++......
T Consensus 273 v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred hhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchh-----hccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 6676664443333332222233788999999887743222 4568999999975 33222 122222344
Q ss_pred ccceEEEeeccCC
Q 003311 264 QIQRRLLLTGTPI 276 (832)
Q Consensus 264 ~~~~rllLTGTPl 276 (832)
.....++=||||-
T Consensus 348 ~~~pvvLgSATPS 360 (730)
T COG1198 348 ENAPVVLGSATPS 360 (730)
T ss_pred hCCCEEEecCCCC
Confidence 5567799999993
No 143
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.97 E-value=8.2e-09 Score=105.39 Aligned_cols=127 Identities=17% Similarity=0.211 Sum_probs=83.7
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCC--CEEEEeCC-CchHHHHHHH---HhhC
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTG--PHVIVAPK-AVLPNWINEF---STWA 187 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~--p~LIV~P~-sll~qW~~E~---~k~~ 187 (832)
.+.+.|.+++-..+- +...+...-.|+|||... .++.|-.-.+..| .+||+|-. .+..|...|+ .++.
T Consensus 64 hpsevqhecipqail----gmdvlcqaksgmgktavf--vl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskym 137 (387)
T KOG0329|consen 64 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVF--VLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYM 137 (387)
T ss_pred CchHhhhhhhhHHhh----cchhheecccCCCceeee--ehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhC
Confidence 566788888877765 666666788999999654 2233333333333 46888886 5566766664 5567
Q ss_pred CCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH--HHHhhcCceEEEEeCCcccC
Q 003311 188 PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLK 250 (832)
Q Consensus 188 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~--~~L~~~~w~~vIiDEaHriK 250 (832)
|+.++.+|.|...-.+.. +.+. ..++||+.|+..+..-. ..|.-.+....|+|||..+.
T Consensus 138 P~vkvaVFfGG~~Ikkde--e~lk--~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 138 PSVKVSVFFGGLFIKKDE--ELLK--NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred CCceEEEEEcceeccccH--HHHh--CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 999999998876443221 1222 36889999999875432 22334456788999998764
No 144
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=1.3e-07 Score=115.24 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=58.8
Q ss_pred CCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHh
Q 003311 111 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFST 185 (832)
Q Consensus 111 ~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k 185 (832)
+-..+||.|.+-...+......+.++++-.+||+|||+.+|+.........+...++++.+.+ +.+.|-.+|+++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 334569999999999999999999999999999999999886654433333333466666665 678899999988
No 145
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.86 E-value=3.5e-08 Score=105.49 Aligned_cols=234 Identities=18% Similarity=0.199 Sum_probs=138.3
Q ss_pred CCCCCchHHHHHHHHHHHHhhcc------CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC-CCchHHHHHH
Q 003311 110 LQGGELRAYQLEGLQWMLSLFNN------NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KAVLPNWINE 182 (832)
Q Consensus 110 l~~~~Lr~yQ~egl~wml~~~~~------~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P-~sll~qW~~E 182 (832)
+..+.|-.-|+|+|-++.+.+.. ..+-+|+|.+|.||-.|..++|.+.+..+ .. +.|.|.. ..|...-.+.
T Consensus 33 ~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-r~-r~vwvS~s~dL~~Da~RD 110 (303)
T PF13872_consen 33 IDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-RK-RAVWVSVSNDLKYDAERD 110 (303)
T ss_pred HhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-CC-ceEEEECChhhhhHHHHH
Confidence 34679999999999999987653 34458999999999999999988776654 23 3455554 5677666666
Q ss_pred HHhhCC-CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH-------HHHhhc------Cc-eEEEEeCCc
Q 003311 183 FSTWAP-SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR-------QYLKKV------QW-IYMIVDEGH 247 (832)
Q Consensus 183 ~~k~~p-~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~-------~~L~~~------~w-~~vIiDEaH 247 (832)
+..... .+.+.....-+.. . . ..-+..|+++||..++... ..|..+ .| .+||+||||
T Consensus 111 l~DIG~~~i~v~~l~~~~~~--~-----~-~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH 182 (303)
T PF13872_consen 111 LRDIGADNIPVHPLNKFKYG--D-----I-IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECH 182 (303)
T ss_pred HHHhCCCcccceechhhccC--c-----C-CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccch
Confidence 665532 2222222111100 0 0 0135569999999998763 222221 22 389999999
Q ss_pred ccCChhh------HHHHHH----HccccceEEEeeccCCCCCHHHHHHHHhcc---CC-CCCCChHHHHHHhcccccccC
Q 003311 248 RLKNHEC------ALAKTI----SGYQIQRRLLLTGTPIQNSLQELWSLLNFL---LP-TIFNSVENFEEWFNAPFKDRG 313 (832)
Q Consensus 248 riKN~~s------k~~kal----~~l~~~~rllLTGTPlqN~l~EL~sLl~fL---~p-~~f~~~~~F~~~f~~~~~~~~ 313 (832)
+.||..+ +...++ ..++..+.+..|||.... +..| +.+.-| .+ ..|.+...|.+.+... +
T Consensus 183 ~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~Nm-aYm~RLGLWG~gtpf~~~~~f~~a~~~g----G 256 (303)
T PF13872_consen 183 KAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNM-AYMSRLGLWGPGTPFPDFDDFLEAMEKG----G 256 (303)
T ss_pred hcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Ccee-eeeeeccccCCCCCCCCHHHHHHHHHhc----C
Confidence 9999654 444554 345667899999998732 2222 111111 11 2355666665544321 1
Q ss_pred cccCChHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHH
Q 003311 314 QVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQ 371 (832)
Q Consensus 314 ~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~ 371 (832)
. ....++..=- ..+..+++|... +-.....++.+++++.|..+|+.
T Consensus 257 v------~amE~vA~dl-Ka~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 257 V------GAMEMVAMDL-KARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred c------hHHHHHHHHH-Hhcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 0 0011111000 012334444332 44556778899999999999974
No 146
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.85 E-value=1e-06 Score=105.69 Aligned_cols=349 Identities=17% Similarity=0.238 Sum_probs=180.3
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchH----HHHHHHHhhC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP----NWINEFSTWA 187 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~----qW~~E~~k~~ 187 (832)
|..+++-|+-|.--| +.|.|.-..||-|||+++.. .+++..-. ...+-||++..-|. +|...+-+|+
T Consensus 74 G~r~ydvQlig~l~L------~~G~IaEm~TGEGKTL~a~l-~ayl~aL~--G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 74 GLRHFDVQLIGGLVL------NDGKIAEMKTGEGKTLVATL-PAYLNALT--GKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred CCCCCchHhhhhHhh------cCCccccccCCCCchHHHHH-HHHHHHhc--CCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 567888888876322 34557779999999997643 33333322 34677888876553 4999999998
Q ss_pred CCceEEEEcCC--hhHHHHHHHHHHhhcCCccEEecCH-----HHHHHh----HHHHhhcCceEEEEeCCcccCChhhHH
Q 003311 188 PSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITHY-----DLIMRD----RQYLKKVQWIYMIVDEGHRLKNHECAL 256 (832)
Q Consensus 188 p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~dVvItTy-----e~l~~d----~~~L~~~~w~~vIiDEaHriKN~~sk~ 256 (832)
+ +.|-+..+. ...|+.. -..||+.+|- ++++.. ........+.++||||+..+-=.
T Consensus 145 G-Lsvg~i~~~~~~~err~a--------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLID---- 211 (870)
T CHL00122 145 G-LTVGLIQEGMSSEERKKN--------YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILID---- 211 (870)
T ss_pred C-CceeeeCCCCChHHHHHh--------cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheec----
Confidence 4 555555432 2233222 3457777774 344332 22233456889999999876321
Q ss_pred HHHHHccccceEEEeeccCCCCCHHHHHHHHh----ccCCCCCCChHHHHHHhcccccccCcccCChHHHHHH-------
Q 003311 257 AKTISGYQIQRRLLLTGTPIQNSLQELWSLLN----FLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLI------- 325 (832)
Q Consensus 257 ~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~----fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~------- 325 (832)
.+..-+++||-+-.+ .++|...+ .|.++. . |... .....+.+++.....+
T Consensus 212 -------eArTPLiISg~~~~~--~~~y~~~~~~v~~L~~~~-----d----y~vd-ek~k~v~LTe~G~~~~e~~l~i~ 272 (870)
T CHL00122 212 -------EARTPLIISGQSKTN--IDKYIVADELAKYLEKNV-----H----YEVD-EKNKNVILTEQGILFIEKILKIE 272 (870)
T ss_pred -------cCCCceeccCCCccc--hHHHHHHHHHHHhcCcCC-----C----eEEE-cCCCceEecHHHHHHHHHHcCCc
Confidence 123447787754322 34444433 332221 0 0000 0011122222211111
Q ss_pred ---------HHHHHhhhhhh-hhhhhHhHHhhcCCCCeEEEEEcCCC-------HHHHHHHHHHHHhcccccccCCC--c
Q 003311 326 ---------IRRLHHVIRPF-ILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGLDTGTG--K 386 (832)
Q Consensus 326 ---------~~~L~~~L~pf-llRR~k~dv~~~LP~k~e~~v~~~ms-------~~Q~~lY~~i~~~~~~~~~~~~~--~ 386 (832)
++.+...|+-. ++.+ ++.--+-+....+| -+.| .++.-+-+.+..+....+..... .
T Consensus 273 ~ly~~~~~~~~~i~~AL~A~~lf~~---d~dYiV~dgeV~iV-De~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlA 348 (870)
T CHL00122 273 DLYSANDPWIPYILNALKAKELFFK---NVHYIVRNNEIIIV-DEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLA 348 (870)
T ss_pred cccccccHHHHHHHHHHHHHHHHhc---CCcEEEECCEEEEE-ECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeee
Confidence 11111111111 1111 11100111111111 1111 22333333333332222221110 1
Q ss_pred chhHHHH-----------------HHHHHHhhCCCccccccccchhhH----HH-HhhcchHHHHHHHHHhhhhcCCeEE
Q 003311 387 SKSLQNL-----------------SMQLRKCCNHPYLFVGEYNMWRKE----EI-IRASGKFELLDRLLPKLRKSGHRVL 444 (832)
Q Consensus 387 ~~~l~~~-----------------~~~LRk~cnhP~l~~~~~~~~~~~----~l-~~~S~Kl~~L~~lL~~l~~~g~kvL 444 (832)
.-+++|+ ...++++.+-+.+..+...+.... .+ .....|+.++.+-+....+.|..||
T Consensus 349 sIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVL 428 (870)
T CHL00122 349 SITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPIL 428 (870)
T ss_pred eeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 1122222 224555555444443322221111 11 1334688888888888889999999
Q ss_pred EEecchhHHHHHHHHHHhCCCeEEEEcCCCC-HHHHHHHHHhhcCCCCCceEEEEeccccccccCc
Q 003311 445 LFSQMTRLMDILEIYLKLNDFKFLRLDGSTK-TEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNL 509 (832)
Q Consensus 445 IFsq~~~~ldiL~~~L~~~g~~~~rldG~ts-~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL 509 (832)
|-|.+....+.|..+|...|+++..++.... .+.-.++|.+ +|... .+-|+|..+|+|.|+
T Consensus 429 IgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIATNMAGRGTDI 490 (870)
T CHL00122 429 IGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIATNMAGRGTDI 490 (870)
T ss_pred EeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEeccccCCCcCe
Confidence 9999999999999999999999999998643 3444556665 33333 478999999999663
No 147
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.85 E-value=5.4e-07 Score=108.94 Aligned_cols=120 Identities=16% Similarity=0.270 Sum_probs=97.3
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
...|+.++.+-+..+.+.|..|||-|.+....++|..+|..+|+++-.|+...- +.-.++|.+= |... .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~A--G~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEA--GQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhc--CCCC--cEEEecc
Confidence 457899999999999999999999999999999999999999999888877533 2223445433 2222 3789999
Q ss_pred ccccccCcc--------cCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEE
Q 003311 502 AGGLGLNLQ--------TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 502 agg~GLNL~--------~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
.+|+|-|+. +-=+||.-..+-|...+.|..||++|.|..-..+.|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999998876 235889899999999999999999999987664443
No 148
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.83 E-value=1e-07 Score=115.77 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=48.3
Q ss_pred CccEEecCHHHHHHhH--HHHhhcCceEEEEeCCcccCChhhHHHHHHHcc----ccceEEEeeccCCCC--CHHHHHHH
Q 003311 215 RFNVLITHYDLIMRDR--QYLKKVQWIYMIVDEGHRLKNHECALAKTISGY----QIQRRLLLTGTPIQN--SLQELWSL 286 (832)
Q Consensus 215 ~~dVvItTye~l~~d~--~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l----~~~~rllLTGTPlqN--~l~EL~sL 286 (832)
...|+++|..++..|. ..+.--.+..|||||||++... +.-+-.+..| +..+..++|+.|-.. ....+-.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~-~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIES-SQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeeccccccc-ccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 3459999999998874 2223335779999999999643 3333333333 456789999999753 33444444
Q ss_pred Hhcc
Q 003311 287 LNFL 290 (832)
Q Consensus 287 l~fL 290 (832)
+.-|
T Consensus 86 mk~L 89 (814)
T TIGR00596 86 MRNL 89 (814)
T ss_pred HHHh
Confidence 5444
No 149
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.81 E-value=1.1e-07 Score=112.18 Aligned_cols=163 Identities=21% Similarity=0.153 Sum_probs=108.3
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC--CC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--PS 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~--p~ 189 (832)
..+-.+|.+-+. ....+...++..++-.|||.....++...++.. ..+.++.|+|. .++.|-..++..-+ +.
T Consensus 510 F~Pd~WQ~elLD----svDr~eSavIVAPTSaGKTfisfY~iEKVLRes-D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 510 FCPDEWQRELLD----SVDRNESAVIVAPTSAGKTFISFYAIEKVLRES-DSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred cCCcHHHHHHhh----hhhcccceEEEeeccCCceeccHHHHHHHHhhc-CCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 456678887663 344577889999999999999988887666653 46789999995 67777666554433 22
Q ss_pred ce-EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH---Hhh--cCceEEEEeCCcccCChh-hHHHHHHHc
Q 003311 190 IA-AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKK--VQWIYMIVDEGHRLKNHE-CALAKTISG 262 (832)
Q Consensus 190 ~~-v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~---L~~--~~w~~vIiDEaHriKN~~-sk~~kal~~ 262 (832)
+. .+...| .+.++..-..-.++|+||-++.+..-.-. -.+ -+..|||+||+|.+.|.. ..+...+-.
T Consensus 585 ~~rg~sl~g------~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 585 FLRGVSLLG------DLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred cccchhhHh------hhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 11 111111 11122211123678999999987653211 111 146799999999998854 566666666
Q ss_pred cccceEEEeeccCCCCCHHHHHHHHh
Q 003311 263 YQIQRRLLLTGTPIQNSLQELWSLLN 288 (832)
Q Consensus 263 l~~~~rllLTGTPlqN~l~EL~sLl~ 288 (832)
+-....|+|||| ++|+..+...++
T Consensus 659 li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 659 LIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred hcCCCeeEEecc--cCCHHHHHHHHH
Confidence 777788999999 578888877776
No 150
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.79 E-value=9.4e-08 Score=113.32 Aligned_cols=152 Identities=22% Similarity=0.201 Sum_probs=91.0
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHH-HHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--C
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIAL-IAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 189 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaial-i~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 189 (832)
.++++|.+++. ......+.|.|.+.+++.|||+.+=-+ +..++..+ +..|.+.|- +.+..=..++..+.- +
T Consensus 223 ~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r---r~~llilp~vsiv~Ek~~~l~~~~~~~G 297 (1008)
T KOG0950|consen 223 KLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR---RNVLLILPYVSIVQEKISALSPFSIDLG 297 (1008)
T ss_pred HHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh---hceeEecceeehhHHHHhhhhhhccccC
Confidence 45555555553 223346788899999999999987433 33444432 356888885 444444444554432 4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhc----CceEEEEeCCcccCC--hhhH----HHHH
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKV----QWIYMIVDEGHRLKN--HECA----LAKT 259 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~----~w~~vIiDEaHriKN--~~sk----~~ka 259 (832)
+.+-.|.|.-...+. ...-.|.|+|-|.-....+.|-.. ...+|||||-|.+.. .+.- +++.
T Consensus 298 ~~ve~y~g~~~p~~~--------~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~ 369 (1008)
T KOG0950|consen 298 FPVEEYAGRFPPEKR--------RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKI 369 (1008)
T ss_pred CcchhhcccCCCCCc--------ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHH
Confidence 666667764321110 145579999999877665555432 356899999999943 4443 3333
Q ss_pred HHccc--cceEEEeeccCCCC
Q 003311 260 ISGYQ--IQRRLLLTGTPIQN 278 (832)
Q Consensus 260 l~~l~--~~~rllLTGTPlqN 278 (832)
+..-. .-..++||||-..|
T Consensus 370 ~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 370 LYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred HHhccccceeEeeeecccCCh
Confidence 31112 22479999996443
No 151
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.76 E-value=3e-06 Score=106.12 Aligned_cols=93 Identities=19% Similarity=0.257 Sum_probs=63.9
Q ss_pred HHHHHHHHhhh-hcCCeEEEEecchhHHHHHHHHHHhCCC--eEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 427 ELLDRLLPKLR-KSGHRVLLFSQMTRLMDILEIYLKLNDF--KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 427 ~~L~~lL~~l~-~~g~kvLIFsq~~~~ldiL~~~L~~~g~--~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
..+.+.|..+. ..+.++|||+.+..++..+.+.|..... .+..+.=+++...|..++++|+.+... +|+.+.+.
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sF 814 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCcc
Confidence 34444444443 4566888888888999988888864321 122232222224578999999975544 67788999
Q ss_pred ccccCccc--CCeEEEeCCCC
Q 003311 504 GLGLNLQT--ADTVIIFDSDW 522 (832)
Q Consensus 504 g~GLNL~~--ad~VI~~D~~w 522 (832)
.+|||+++ +..||+.-.|+
T Consensus 815 wEGVD~pg~~l~~viI~kLPF 835 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPF 835 (928)
T ss_pred cCccccCCCceEEEEEecCCC
Confidence 99999997 58999988776
No 152
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.71 E-value=5.1e-06 Score=102.39 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=64.0
Q ss_pred HHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccccccc
Q 003311 428 LLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507 (832)
Q Consensus 428 ~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GL 507 (832)
.+.+.+..+...+.++||+..+.++|+.+.+.|....+.. ...|... .|..++++|+.++.. +|+.+....+|+
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 4455555555667889998888899998888887655444 5556433 256789999985544 788889999999
Q ss_pred Cccc--CCeEEEeCCCC
Q 003311 508 NLQT--ADTVIIFDSDW 522 (832)
Q Consensus 508 NL~~--ad~VI~~D~~w 522 (832)
|++. +..||+.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 9963 56677766553
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.68 E-value=3.7e-06 Score=101.99 Aligned_cols=101 Identities=21% Similarity=0.196 Sum_probs=76.6
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhCCC-eEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCccc--CCe
Q 003311 438 KSGHRVLLFSQMTRLMDILEIYLKLNDF-KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT--ADT 514 (832)
Q Consensus 438 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~-~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~--ad~ 514 (832)
..+.++|||+.+-.+|..+.+.|..... -.+...|..+ +..+++.|...... .|++.+....+|||++. +..
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~~ 551 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALRL 551 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCeeE
Confidence 4555899999999999999999987665 3455566555 44889999986653 58999999999999997 688
Q ss_pred EEEeCCCCC-h-----------------------------hhHHHHhhhccccCCcCcE
Q 003311 515 VIIFDSDWN-P-----------------------------QMDQQAEDRAHRIGQKKEV 543 (832)
Q Consensus 515 VI~~D~~wN-p-----------------------------~~~~QAigRahRiGQ~k~V 543 (832)
||+.-.|+= | ....|++||+.|--+.+-|
T Consensus 552 vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ 610 (654)
T COG1199 552 VVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGV 610 (654)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceE
Confidence 999887763 2 1345999999994444443
No 154
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.67 E-value=7.6e-06 Score=97.11 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC
Q 003311 119 QLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA 187 (832)
Q Consensus 119 Q~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~ 187 (832)
|.+-+.++...+.++...++-.++|+|||+..+..+...... ...+++||++|+ .+..|+.+++..+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-RPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-ccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 777788888888888888888999999999887555433321 124689999996 67788888776554
No 155
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=1.4e-05 Score=96.14 Aligned_cols=351 Identities=16% Similarity=0.236 Sum_probs=183.6
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCch----HHHHHHHHhhC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL----PNWINEFSTWA 187 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k~~ 187 (832)
|-.+++-|+-|.--| +.|.|.-+.||=|||+++ ++.+++..-. ...+-||+++.-| ..|...+.+|+
T Consensus 83 G~r~ydVQliGgl~L------h~G~IAEM~TGEGKTL~a-tlpaylnAL~--GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 83 GMRHFDVQLIGGMVL------HEGQIAEMKTGEGKTLVA-TLPSYLNALT--GKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred CCCcchhHHHhhhhh------cCCceeeecCCCChhHHH-HHHHHHHhhc--CCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 567778888776433 356688899999999976 3444443322 2356777777655 34999999998
Q ss_pred CCceEEEEcCC--hhHHHHHHHHHHhhcCCccEEecCHH-----HHHHhHH----HHhhcCceEEEEeCCcccCChhhHH
Q 003311 188 PSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITHYD-----LIMRDRQ----YLKKVQWIYMIVDEGHRLKNHECAL 256 (832)
Q Consensus 188 p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~dVvItTye-----~l~~d~~----~L~~~~w~~vIiDEaHriKN~~sk~ 256 (832)
++.|-+..+. +..|+.. -..||+.+|-. +++.... ......++++||||+..+.=.
T Consensus 154 -GLtvg~i~~~~~~~err~a--------Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILID---- 220 (939)
T PRK12902 154 -GLSVGLIQQDMSPEERKKN--------YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILID---- 220 (939)
T ss_pred -CCeEEEECCCCChHHHHHh--------cCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeec----
Confidence 5666665543 2233221 46788888743 3343322 123357889999999876321
Q ss_pred HHHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHH--------HhcccccccCcccCChHHHHHH---
Q 003311 257 AKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEE--------WFNAPFKDRGQVALTDEEQLLI--- 325 (832)
Q Consensus 257 ~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~--------~f~~~~~~~~~~~~~~ee~~~~--- 325 (832)
.+..-|++||.+-. ..++|...+-+-. .+.+ .|... .....+.+++.....+
T Consensus 221 -------EArTPLIISg~~~~--~~~~y~~~~~~~~-------~L~~~~~~~~~~dy~id-ek~~~v~LTe~G~~~~e~~ 283 (939)
T PRK12902 221 -------EARTPLIISGQVER--PQEKYQKAAEVAA-------ALQRKDGIDPEGDYEVD-EKQRNVLLTDEGFAKAEQL 283 (939)
T ss_pred -------cCCCcccccCCCcc--chHHHHHHHHHHH-------HhhhhcccCCCCCeEEe-cCCCeeeEcHHHHHHHHHH
Confidence 12233778886532 2344433321110 0011 00000 0111223333221111
Q ss_pred -------------HHHHHhhhhhh-hhhhhHhHHhhcCCCCeEEEEEcCCC-------HHHHHHHHHHHHhcccccccCC
Q 003311 326 -------------IRRLHHVIRPF-ILRRKKDEVEKYLPGKSQVILKCDMS-------AWQKVYYQQVTDVGRVGLDTGT 384 (832)
Q Consensus 326 -------------~~~L~~~L~pf-llRR~k~dv~~~LP~k~e~~v~~~ms-------~~Q~~lY~~i~~~~~~~~~~~~ 384 (832)
.+.+...|+-. ++.| ++. ++-...++++.-+.| .++.-+-+.+..+....+....
T Consensus 284 ~~i~nLy~~~~~~~~~i~~AL~A~~lf~~---d~d-YiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~ 359 (939)
T PRK12902 284 LGVSDLFDPQDPWAHYIFNALKAKELFIK---DVN-YIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPET 359 (939)
T ss_pred hCchhhcCcccHHHHHHHHHHHHHHHHhc---CCe-EEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCc
Confidence 11111111111 1111 110 000001111111111 2333344444433322222111
Q ss_pred C--cchhHHHHH-----------------HHHHHhhCCCccccccccchh----hHH-HHhhcchHHHHHHHHHhhhhcC
Q 003311 385 G--KSKSLQNLS-----------------MQLRKCCNHPYLFVGEYNMWR----KEE-IIRASGKFELLDRLLPKLRKSG 440 (832)
Q Consensus 385 ~--~~~~l~~~~-----------------~~LRk~cnhP~l~~~~~~~~~----~~~-l~~~S~Kl~~L~~lL~~l~~~g 440 (832)
. ..-.++|++ ..+.++.+-+.+..+...+.. .+. ......|+.++.+-+..+.+.|
T Consensus 360 ~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~G 439 (939)
T PRK12902 360 QTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQG 439 (939)
T ss_pred eeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCC
Confidence 0 111122222 245555555444433221111 001 1233578999999999999999
Q ss_pred CeEEEEecchhHHHHHHHHHHhCCCeEEEEcCC-CCHHHHHHHHHhhcCCCCCceEEEEeccccccccCc
Q 003311 441 HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGS-TKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNL 509 (832)
Q Consensus 441 ~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~-ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL 509 (832)
..|||-|.+....+.|...|...|+++..++.. ...+.-.++|.+ +|... .+-|+|..+|+|-|+
T Consensus 440 rPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIATNMAGRGTDI 505 (939)
T PRK12902 440 RPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIATNMAGRGTDI 505 (939)
T ss_pred CCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEeccCCCCCcCE
Confidence 999999999999999999999999999999986 333444556665 33333 378999999999653
No 156
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.63 E-value=1.7e-06 Score=104.96 Aligned_cols=110 Identities=21% Similarity=0.232 Sum_probs=80.4
Q ss_pred CCeEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeE
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV 515 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~----~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~V 515 (832)
..-+|||-.-....+.+...|.. ....++.++|..+.++..++ |+......+-+++||..+.++|.+..+..|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45799999888877777777765 46889999999999887774 544333334379999999999999999888
Q ss_pred EE--------eCCCC----------ChhhHHHHhhhccccCCcCcEEEEEEEeCCCHH
Q 003311 516 II--------FDSDW----------NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 555 (832)
Q Consensus 516 I~--------~D~~w----------Np~~~~QAigRahRiGQ~k~V~V~rLit~~siE 555 (832)
|= ||+-- +-+...||-|||+| +.+-.+|||.+++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 73 33321 23355576666666 5577899999875444
No 157
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.52 E-value=1.2e-06 Score=106.72 Aligned_cols=169 Identities=20% Similarity=0.239 Sum_probs=103.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHH-HH---------HHHHhhCCC--ceEEEEcCCh--
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN-WI---------NEFSTWAPS--IAAVVYDGRP-- 199 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~q-W~---------~E~~k~~p~--~~v~~~~g~~-- 199 (832)
.+.-+.++||+|||.+++.+|.+|....+. ..+|||||..-+.. .. .-|...+++ +...+|.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGL-FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 355789999999999999999998877553 58999999743322 22 223333333 4455565432
Q ss_pred -hHH----HHHHHHHHhh----cCCccEEecCHHHHHHhHH------HH--hh--cCce-------EEEEeCCcccCChh
Q 003311 200 -DER----KAMREEFFSE----RGRFNVLITHYDLIMRDRQ------YL--KK--VQWI-------YMIVDEGHRLKNHE 253 (832)
Q Consensus 200 -~~r----~~~~~~~~~~----~~~~dVvItTye~l~~d~~------~L--~~--~~w~-------~vIiDEaHriKN~~ 253 (832)
..| ..+. .+... .....|+|+|.+.+.++.. .+ .. ..|+ +||+||+|++.. .
T Consensus 139 k~gr~~~~~~i~-~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~ 216 (986)
T PRK15483 139 KSGRKNFPAQLS-NFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-D 216 (986)
T ss_pred ccccccChHHHH-HHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-c
Confidence 111 1111 12211 1257899999998866311 11 11 1222 799999999965 3
Q ss_pred hHHHHHHHccccceEEEeeccCCC-------CC--HHHHHHHHhccCCCCCCChHHHHHHhccccc
Q 003311 254 CALAKTISGYQIQRRLLLTGTPIQ-------NS--LQELWSLLNFLLPTIFNSVENFEEWFNAPFK 310 (832)
Q Consensus 254 sk~~kal~~l~~~~rllLTGTPlq-------N~--l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~ 310 (832)
.+..+++..+.+.+.|.-|||--. |. ..+.++|+--| ...+.|.+.....+.
T Consensus 217 ~k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~L-----davdAyn~~LVK~I~ 277 (986)
T PRK15483 217 NKFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFDL-----NAVDSFNDGLVKGVD 277 (986)
T ss_pred hHHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceeec-----CHHHHHHhCCcceEE
Confidence 446688899999999999999743 11 11245544433 446777776655444
No 158
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.50 E-value=9.3e-06 Score=98.42 Aligned_cols=127 Identities=20% Similarity=0.327 Sum_probs=90.7
Q ss_pred chHHHHHHHHHhhhhc--CCeEEEEecchhHHHHHHHHHH----hC---CCeEEEEcCCCCHHHHHHHHHhhcCCCCCce
Q 003311 424 GKFELLDRLLPKLRKS--GHRVLLFSQMTRLMDILEIYLK----LN---DFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~--g~kvLIFsq~~~~ldiL~~~L~----~~---g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~ 494 (832)
-...++..++..+.+. ...+|||-.-..-+..+...|. .. .+-+..+|++++..+.+.+ |+.+..+.+
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 4556666666665543 4589999988877777666664 22 3678889999998776655 555555566
Q ss_pred EEEEeccccccccCcccCCeEE--------EeCCC---------C-ChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHH
Q 003311 495 MFLLSTRAGGLGLNLQTADTVI--------IFDSD---------W-NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEE 556 (832)
Q Consensus 495 v~LlSt~agg~GLNL~~ad~VI--------~~D~~---------w-Np~~~~QAigRahRiGQ~k~V~V~rLit~~siEe 556 (832)
-++++|..+...|.+..+-+|| .||+- | +-+.-.||.|||+| ..+-.+|+|.+..-.+.
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhhh
Confidence 6899999999999998877665 35543 2 33456788888887 46778999998765443
No 159
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.49 E-value=3.3e-06 Score=97.86 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=70.2
Q ss_pred HhhcCCCCCceEEEEeccccccccCcccCCeE--------EEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHH
Q 003311 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV--------IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 555 (832)
Q Consensus 484 ~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~V--------I~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siE 555 (832)
++|-.+... | -|-+.|++-||.||.-.+| |-+++||+...-+|..||.||-.|.+...+..||++=--|
T Consensus 851 qrFM~GeK~--v-AIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 851 QRFMDGEKL--V-AIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred hhhccccce--e-eeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 456665432 3 4445788889999986544 5599999999999999999999999998888899887778
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 003311 556 EVILERAKQKMGIDAKVIQAG 576 (832)
Q Consensus 556 e~Il~~~~~K~~l~~~vi~~g 576 (832)
.+......+++.-..+.-.+.
T Consensus 928 rRFAS~VAKRLESLGALThGD 948 (1300)
T KOG1513|consen 928 RRFASIVAKRLESLGALTHGD 948 (1300)
T ss_pred hHHHHHHHHHHHhhccccccc
Confidence 888888877776665555443
No 160
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.46 E-value=2.8e-05 Score=89.97 Aligned_cols=111 Identities=20% Similarity=0.222 Sum_probs=76.6
Q ss_pred CeEEEEecchhHHHHHHHHHHh----CCC----eEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccC
Q 003311 441 HRVLLFSQMTRLMDILEIYLKL----NDF----KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTA 512 (832)
Q Consensus 441 ~kvLIFsq~~~~ldiL~~~L~~----~g~----~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~a 512 (832)
.-+|||=.-....+.+...|.. .+- -++.++|+++.++..+ -|.......+-+++||..+...|.+.+.
T Consensus 259 GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~r---vF~p~p~g~RKvIlsTNIAETSlTI~GI 335 (674)
T KOG0922|consen 259 GDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSR---VFDPAPPGKRKVILSTNIAETSLTIDGI 335 (674)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhc---cccCCCCCcceEEEEcceeeeeEEecce
Confidence 3689998877666655555543 222 3578999999877654 4555554566789999999999999998
Q ss_pred CeEEEe----CCCCCh-----------hhHHHHhhhccccCCcCcEEEEEEEeCCCH
Q 003311 513 DTVIIF----DSDWNP-----------QMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554 (832)
Q Consensus 513 d~VI~~----D~~wNp-----------~~~~QAigRahRiGQ~k~V~V~rLit~~si 554 (832)
..||=- -..||| ..-.||.-|++|-|.+.+..+|||.++.-.
T Consensus 336 ~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 336 RYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 777521 112344 234456666666666788999999998765
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.40 E-value=9.1e-06 Score=96.75 Aligned_cols=111 Identities=21% Similarity=0.396 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc
Q 003311 425 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504 (832)
Q Consensus 425 Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 504 (832)
...+...++..+ ..|++|.|||....+.+++++++...+.++..++|..+..+ ++.+.. +.| ++=|.+..
T Consensus 268 ~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W~~----~~V-viYT~~it 337 (824)
T PF02399_consen 268 ETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESWKK----YDV-VIYTPVIT 337 (824)
T ss_pred hhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccccc----eeE-EEEeceEE
Confidence 344555555554 56999999999999999999999999999999999777653 233432 444 55566777
Q ss_pred cccCccc--CCeEEEe--CCCCChhh--HHHHhhhccccCCcCcEEEE
Q 003311 505 LGLNLQT--ADTVIIF--DSDWNPQM--DQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 505 ~GLNL~~--ad~VI~~--D~~wNp~~--~~QAigRahRiGQ~k~V~V~ 546 (832)
.||++-. .|.|+.| .....|.+ ..|.+||+..+.. +++.||
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~ 384 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVY 384 (824)
T ss_pred EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEE
Confidence 8888754 5666666 33344554 6999999999874 344444
No 162
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.40 E-value=7.7e-05 Score=90.80 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=61.5
Q ss_pred HHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHhhcC----CCCCceEEEEecc
Q 003311 427 ELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-DFKFLRLDGSTKTEERGTLLKQFNA----PDSPYFMFLLSTR 501 (832)
Q Consensus 427 ~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-g~~~~rldG~ts~~eR~~~i~~Fn~----~~~~~~v~LlSt~ 501 (832)
..+.+.+..+...+.++|||+.+-.+|+.+...|... ++. +...|.. .|..+++.|.. ++.. +|+.+.
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~---VL~g~~ 593 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGS---VLFGLQ 593 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCe---EEEEec
Confidence 3445555444445556888888888888888888642 333 3445642 47788877763 3333 677789
Q ss_pred ccccccCccc--CCeEEEeCCCC
Q 003311 502 AGGLGLNLQT--ADTVIIFDSDW 522 (832)
Q Consensus 502 agg~GLNL~~--ad~VI~~D~~w 522 (832)
...+|||+++ +..||+.-.|+
T Consensus 594 sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 594 SFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccccccCCCCceEEEEEEcCCC
Confidence 9999999986 78999987765
No 163
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.36 E-value=1.5e-06 Score=92.82 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=78.7
Q ss_pred HHHHhhcCCCCCceEEEEeccccccccCcccC--------CeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 481 TLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTA--------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 481 ~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~a--------d~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
...+.|+++... |+|+ ++||+.||.|++- ..-|.+++||+....+|..||+||-||..+..+..+++.-
T Consensus 52 ~e~~~F~~g~k~--v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD--VAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce--EEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456799998644 5555 5999999999963 2347899999999999999999999999997777788888
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCc
Q 003311 553 SIEEVILERAKQKMGIDAKVIQAGL 577 (832)
Q Consensus 553 siEe~Il~~~~~K~~l~~~vi~~g~ 577 (832)
..|.+....+.+|+.-..+...+.+
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccCcc
Confidence 8999999999999988887776654
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.34 E-value=2.3e-06 Score=82.12 Aligned_cols=128 Identities=15% Similarity=0.112 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCcHHHHHHH-HHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHh
Q 003311 133 NLNGILADEMGLGKTIQTIA-LIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS 211 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaia-li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~ 211 (832)
+.-.+|-.-+|.|||...|. ++...+.. .+++||+.|.-++. +|+.+...+..+... .....+..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~---~~rvLvL~PTRvva---~em~~aL~~~~~~~~-t~~~~~~~------- 69 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR---RLRVLVLAPTRVVA---EEMYEALKGLPVRFH-TNARMRTH------- 69 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT---T--EEEEESSHHHH---HHHHHHTTTSSEEEE-STTSS----------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc---cCeEEEecccHHHH---HHHHHHHhcCCcccC-ceeeeccc-------
Confidence 33457888899999998764 33333333 46899999986552 344444444443322 21111110
Q ss_pred hcCCccEEecCHHHHHHhHH-HHhhcCceEEEEeCCcccCChhhHHHHHH-Hcc---ccceEEEeeccCC
Q 003311 212 ERGRFNVLITHYDLIMRDRQ-YLKKVQWIYMIVDEGHRLKNHECALAKTI-SGY---QIQRRLLLTGTPI 276 (832)
Q Consensus 212 ~~~~~dVvItTye~l~~d~~-~L~~~~w~~vIiDEaHriKN~~sk~~kal-~~l---~~~~rllLTGTPl 276 (832)
.+.-.|-+++|.++..... .....+|++||+||||-. ++.|-..... ..+ .....+++||||-
T Consensus 70 -~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 70 -FGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred -cCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 1556688889988765432 223358999999999974 4444433332 333 2236899999994
No 165
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.32 E-value=1.2e-06 Score=95.50 Aligned_cols=95 Identities=21% Similarity=0.278 Sum_probs=87.6
Q ss_pred CCeEEEEecchhHHHHHHHHHHhCC---CeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEE
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKLND---FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 516 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~~g---~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI 516 (832)
-.++||||....-+|-|++++..+| +.++-++|..++.+|.+.++.|+..+-. |||+|+++.+||+++....+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceEE
Confidence 4589999999999999999998763 6788899999999999999999998865 999999999999999999999
Q ss_pred EeCCCCChhhHHHHhhhcccc
Q 003311 517 IFDSDWNPQMDQQAEDRAHRI 537 (832)
Q Consensus 517 ~~D~~wNp~~~~QAigRahRi 537 (832)
..-.|-.-..|.+||||++|.
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999988874
No 166
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.28 E-value=7.1e-05 Score=86.13 Aligned_cols=93 Identities=18% Similarity=0.238 Sum_probs=64.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCC----CCCh-----------hhHH
Q 003311 464 DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDS----DWNP-----------QMDQ 528 (832)
Q Consensus 464 g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~----~wNp-----------~~~~ 528 (832)
++.++.|...++.+-.. +-|+......+-++++|..+.+.|.++...+||=... -+|| ..-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~---kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQA---KIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhh---hhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 67888888888876554 4466555566778999999999999999888874222 1233 2223
Q ss_pred HHhhhccccCCcCcEEEEEEEeCCCHHHHHH
Q 003311 529 QAEDRAHRIGQKKEVRVFVLVSVGSIEEVIL 559 (832)
Q Consensus 529 QAigRahRiGQ~k~V~V~rLit~~siEe~Il 559 (832)
||--|++|.|.+.+-.+||+.|+.+....|+
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 3333444555566889999999988777665
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.24 E-value=1.7e-05 Score=86.36 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=53.6
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHH-HHHHHhcCC--CCCEEEEeCC-CchHHHHHHHHhh
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI-AYLLENKGV--TGPHVIVAPK-AVLPNWINEFSTW 186 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali-~~l~~~~~~--~~p~LIV~P~-sll~qW~~E~~k~ 186 (832)
.++||.|.+-+.-+...+.++.++|+-.++|+|||+..+..+ .++...... ..+++++++. +.+.+-..++.+.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 467999999999999988899999999999999999988665 444433321 2367777775 3444444555543
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.24 E-value=1.7e-05 Score=86.36 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=53.6
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHH-HHHHHhcCC--CCCEEEEeCC-CchHHHHHHHHhh
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI-AYLLENKGV--TGPHVIVAPK-AVLPNWINEFSTW 186 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali-~~l~~~~~~--~~p~LIV~P~-sll~qW~~E~~k~ 186 (832)
.++||.|.+-+.-+...+.++.++|+-.++|+|||+..+..+ .++...... ..+++++++. +.+.+-..++.+.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 467999999999999988899999999999999999988665 444433321 2367777775 3444444555543
No 169
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.09 E-value=0.00038 Score=80.30 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=71.2
Q ss_pred CCeEEEEecchhHHHHHHHHHH----h-----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcc
Q 003311 440 GHRVLLFSQMTRLMDILEIYLK----L-----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQ 510 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~----~-----~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~ 510 (832)
..-+|||-.-..-.+.+...|. . +.+-++.|+.+.+.+....+ |.....+.+-++++|..+.+.|.+.
T Consensus 473 ~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTId 549 (902)
T KOG0923|consen 473 LGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTID 549 (902)
T ss_pred CccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeec
Confidence 3457777765544444333332 2 34568889999998776655 4443444566799999999999988
Q ss_pred cCCeEEEeCCC------CCh--------------hhHHHHhhhccccCCcCcEEEEEEEeCCCH
Q 003311 511 TADTVIIFDSD------WNP--------------QMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554 (832)
Q Consensus 511 ~ad~VI~~D~~------wNp--------------~~~~QAigRahRiGQ~k~V~V~rLit~~si 554 (832)
++..|| ||- +|| +.-.||.|||+|.| +-.+|||.+..+.
T Consensus 550 gI~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~aY 608 (902)
T KOG0923|consen 550 GIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTAWAY 608 (902)
T ss_pred CeEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeechhhh
Confidence 877775 443 343 45668888888876 5568888885443
No 170
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=5.9e-05 Score=88.19 Aligned_cols=79 Identities=24% Similarity=0.346 Sum_probs=58.2
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE--------eCC---------CC-ChhhHH
Q 003311 467 FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII--------FDS---------DW-NPQMDQ 528 (832)
Q Consensus 467 ~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~--------~D~---------~w-Np~~~~ 528 (832)
++.|..-.+.++. ++-|.......+..+++|.++.+.|.++...+||= ||. .| +-+.-.
T Consensus 607 vLPLYSLLs~~~Q---~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASad 683 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQ---MRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASAD 683 (1172)
T ss_pred EeehhhhcCHHHh---hhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccc
Confidence 5566666666554 45566666667889999999999999999999873 443 34 445567
Q ss_pred HHhhhccccCCcCcEEEEEEEeC
Q 003311 529 QAEDRAHRIGQKKEVRVFVLVSV 551 (832)
Q Consensus 529 QAigRahRiGQ~k~V~V~rLit~ 551 (832)
||.|||+|+|. -++|||.+.
T Consensus 684 QRAGRAGRtgp---GHcYRLYSS 703 (1172)
T KOG0926|consen 684 QRAGRAGRTGP---GHCYRLYSS 703 (1172)
T ss_pred hhccccCCCCC---Cceeehhhh
Confidence 99999999885 467888653
No 171
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.06 E-value=2e-05 Score=81.80 Aligned_cols=68 Identities=26% Similarity=0.352 Sum_probs=47.8
Q ss_pred CchHHHHHHHHHHHHhhccCCC-eEEEcCCCCcHHHHHHHHHHHHHH-----hcCCCCCEEEEeCC-CchHHHHHHHHh
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLN-GILADEMGLGKTIQTIALIAYLLE-----NKGVTGPHVIVAPK-AVLPNWINEFST 185 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~-gILaDemGlGKTiqaiali~~l~~-----~~~~~~p~LIV~P~-sll~qW~~E~~k 185 (832)
+|.+.|.+++..++. ... .++..+.|+|||.+..+++..+.. .....+++||++|. ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478999999986664 444 788999999999888788877732 24556799999997 457777777766
No 172
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.00091 Score=80.57 Aligned_cols=123 Identities=19% Similarity=0.221 Sum_probs=92.9
Q ss_pred hhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 003311 421 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 500 (832)
Q Consensus 421 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt 500 (832)
....|+.++..-+......|.+|||-+.+....+.+...|...|++...|+-.-. .|+.-+-.+ ++..+ .+-++|
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~g--aVTiAT 484 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPG--AVTIAT 484 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCC--cccccc
Confidence 4467999999999999999999999999999999999999999999988887655 344333333 22333 367899
Q ss_pred cccccccCcccCC-----------eEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEE
Q 003311 501 RAGGLGLNLQTAD-----------TVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLV 549 (832)
Q Consensus 501 ~agg~GLNL~~ad-----------~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLi 549 (832)
..+|+|-++.--. +||--+..-+-..+.|-.||++|.|-. -...|+|.
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp-G~S~F~lS 543 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP-GSSRFYLS 543 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc-chhhhhhh
Confidence 9999999987432 455566666777788999999999932 24444443
No 173
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.99 E-value=0.0065 Score=74.92 Aligned_cols=47 Identities=19% Similarity=0.092 Sum_probs=35.0
Q ss_pred ceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCc
Q 003311 493 YFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 542 (832)
Q Consensus 493 ~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~ 542 (832)
..+++|+|.....|+|+ ++|.+|.-- -.....+|+.||+.|-|+...
T Consensus 838 ~~~i~v~Tqv~E~g~D~-dfd~~~~~~--~~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 838 HLFIVLATPVEEVGRDH-DYDWAIADP--SSMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CCeEEEEeeeEEEEecc-cCCeeeecc--CcHHHHHHHhhcccccccCCC
Confidence 44689999999999996 355555422 234568999999999997644
No 174
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.92 E-value=4.9e-05 Score=85.95 Aligned_cols=107 Identities=27% Similarity=0.299 Sum_probs=82.6
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhCCC-eEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEE
Q 003311 438 KSGHRVLLFSQMTRLMDILEIYLKLNDF-KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 516 (832)
Q Consensus 438 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~-~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI 516 (832)
..|.-|+-||.-. +=-+...+..+|. +++.|.|+.+++.|.+.-..||++.+++.| |++++|.|.|||| ..++||
T Consensus 356 k~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL-~IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNL-NIRRII 431 (700)
T ss_pred CCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeeccccccccc-ceeEEE
Confidence 4688899898752 2223334445554 499999999999999999999998887665 8899999999998 578999
Q ss_pred EeCCC---------CChhhHHHHhhhccccCCcCc-EEEEEE
Q 003311 517 IFDSD---------WNPQMDQQAEDRAHRIGQKKE-VRVFVL 548 (832)
Q Consensus 517 ~~D~~---------wNp~~~~QAigRahRiGQ~k~-V~V~rL 548 (832)
+++.- -...+..|.-|||+|.|.+-+ -.|..|
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl 473 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL 473 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe
Confidence 98874 355678899999999997755 344333
No 175
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.81 E-value=0.00024 Score=80.28 Aligned_cols=131 Identities=17% Similarity=0.213 Sum_probs=97.3
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHh----CC----CeEEEEcCCCCHHHHHHHHHhhcCCCCCc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL----ND----FKFLRLDGSTKTEERGTLLKQFNAPDSPY 493 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~----~g----~~~~rldG~ts~~eR~~~i~~Fn~~~~~~ 493 (832)
.+.|+....+++.++...|-|+|-||..+.+++++....+. -| -.+..+.|+-..++|.++-...-.+.-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L-- 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKL-- 584 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCee--
Confidence 45566677778888888899999999999888776544321 11 124556789899999888766544443
Q ss_pred eEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHH
Q 003311 494 FMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEV 557 (832)
Q Consensus 494 ~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~ 557 (832)
.-+++|.|+.+||++...|.|+++..|.+.+.+.|..|||+|-.... ..| +.+..+.+|..
T Consensus 585 -~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~S-Lav-yva~~~PVDQ~ 645 (1034)
T KOG4150|consen 585 -CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPS-LAV-YVAFLGPVDQY 645 (1034)
T ss_pred -eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCc-eEE-EEEeccchhhH
Confidence 36899999999999999999999999999999999999999965322 222 23334455543
No 176
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.64 E-value=0.00028 Score=83.66 Aligned_cols=137 Identities=21% Similarity=0.215 Sum_probs=90.9
Q ss_pred hccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchH----H----HHHHH-HhhCCC--ceEEEEcCC
Q 003311 130 FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP----N----WINEF-STWAPS--IAAVVYDGR 198 (832)
Q Consensus 130 ~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~----q----W~~E~-~k~~p~--~~v~~~~g~ 198 (832)
.....|.=+-+|||+|||.+-+-+|..|....+.. .++||||...+. . -.+.| ...+.+ +..++|..
T Consensus 71 ~~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~-KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~- 148 (985)
T COG3587 71 IDDKLNIDILMETGTGKTYTYLRTMFELHKKYGLF-KFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE- 148 (985)
T ss_pred CCCcceeeEEEecCCCceeeHHHHHHHHHHHhCce-eEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech-
Confidence 34456666789999999999999998887766544 789999953321 1 23344 333333 33444431
Q ss_pred hhHHHHHHHHHHhhcCCccEEecCHHHHHHh---H---------------------HHHhhcCceEEEEeCCcccCChhh
Q 003311 199 PDERKAMREEFFSERGRFNVLITHYDLIMRD---R---------------------QYLKKVQWIYMIVDEGHRLKNHEC 254 (832)
Q Consensus 199 ~~~r~~~~~~~~~~~~~~dVvItTye~l~~d---~---------------------~~L~~~~w~~vIiDEaHriKN~~s 254 (832)
... ...+.....+.|++.+...+.++ . ..|...++ .|||||-|++... .
T Consensus 149 ~~~-----~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rP-IvIvDEPh~f~~~-~ 221 (985)
T COG3587 149 DIE-----KFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRP-IVIVDEPHRFLGD-D 221 (985)
T ss_pred HHH-----HHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCC-EEEecChhhcccc-h
Confidence 111 11222236778888888887665 1 11222232 6999999999876 7
Q ss_pred HHHHHHHccccceEEEeeccC
Q 003311 255 ALAKTISGYQIQRRLLLTGTP 275 (832)
Q Consensus 255 k~~kal~~l~~~~rllLTGTP 275 (832)
+...++..+.+...+=.+||-
T Consensus 222 k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 222 KTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred HHHHHHHhhCceEEEEecccc
Confidence 889999999999999899984
No 177
>PRK10536 hypothetical protein; Provisional
Probab=97.46 E-value=0.00068 Score=71.84 Aligned_cols=145 Identities=17% Similarity=0.111 Sum_probs=83.8
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCce--
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA-- 191 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~-- 191 (832)
.....|...+.++.. +...++..+.|+|||..++++.......+. ...++|+-|.-.. .|.-.|.|+-.
T Consensus 59 p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~----ge~LGfLPG~~~e 129 (262)
T PRK10536 59 ARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQA----DEDLGFLPGDIAE 129 (262)
T ss_pred CCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCc----hhhhCcCCCCHHH
Confidence 345688888877754 457788899999999999999886554332 3344554443222 23333444210
Q ss_pred -EEE-----------EcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHH
Q 003311 192 -AVV-----------YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKT 259 (832)
Q Consensus 192 -v~~-----------~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~ka 259 (832)
... +.|... + ..... ...-.|.|....+++- ..+.-.+||||||+++.- ......
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~----~-~~~~~-~~~~~Iei~~l~ymRG-----rtl~~~~vIvDEaqn~~~--~~~k~~ 196 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASF----M-QYCLR-PEIGKVEIAPFAYMRG-----RTFENAVVILDEAQNVTA--AQMKMF 196 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHH----H-HHHHH-hccCcEEEecHHHhcC-----CcccCCEEEEechhcCCH--HHHHHH
Confidence 000 001000 0 00000 0122345555444432 122447999999998854 445555
Q ss_pred HHccccceEEEeeccCCCCCH
Q 003311 260 ISGYQIQRRLLLTGTPIQNSL 280 (832)
Q Consensus 260 l~~l~~~~rllLTGTPlqN~l 280 (832)
+.++....+++++|-|-|.++
T Consensus 197 ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 197 LTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred HhhcCCCCEEEEeCChhhccC
Confidence 688899999999999987664
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.45 E-value=0.00051 Score=70.74 Aligned_cols=148 Identities=19% Similarity=0.199 Sum_probs=67.7
Q ss_pred chHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEE
Q 003311 115 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVV 194 (832)
Q Consensus 115 Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~ 194 (832)
+-+.|...+..|.. ..-.++....|+|||+.|++....+... +...+++|+-|..-...+ + -|.|+-.--.
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~---l-GflpG~~~eK 75 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGED---L-GFLPGDLEEK 75 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT--------SS-------
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccc---c-ccCCCCHHHH
Confidence 44689999987773 5567888999999999999999888876 445577777776433221 1 1122100000
Q ss_pred EcCChhHHHHHHHHHHh---h------cCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcccc
Q 003311 195 YDGRPDERKAMREEFFS---E------RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQI 265 (832)
Q Consensus 195 ~~g~~~~r~~~~~~~~~---~------~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~ 265 (832)
+..- -..+...+.. . .....|-+.+...++- ..+...+||||||+++.. ..+...+.++..
T Consensus 76 ~~p~---~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQN~t~--~~~k~ilTR~g~ 145 (205)
T PF02562_consen 76 MEPY---LRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQNLTP--EELKMILTRIGE 145 (205)
T ss_dssp --TT---THHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG--H--HHHHHHHTTB-T
T ss_pred HHHH---HHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcC-----ccccceEEEEecccCCCH--HHHHHHHcccCC
Confidence 0000 0000000000 0 0111222222222211 123458999999998753 344455688888
Q ss_pred ceEEEeeccCCCCCHH
Q 003311 266 QRRLLLTGTPIQNSLQ 281 (832)
Q Consensus 266 ~~rllLTGTPlqN~l~ 281 (832)
..+++++|-|.|.+..
T Consensus 146 ~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 146 GSKIIITGDPSQIDLP 161 (205)
T ss_dssp T-EEEEEE--------
T ss_pred CcEEEEecCceeecCC
Confidence 8999999999877654
No 179
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.44 E-value=0.0011 Score=76.60 Aligned_cols=148 Identities=17% Similarity=0.265 Sum_probs=96.4
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc-hHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~p~~~ 191 (832)
.+|..-|..||...+. +.=.||-.+.|+|||++..+++.++.... .+|+||++|.++ ++|-...+.+-. ++
T Consensus 409 pkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~~--~~~VLvcApSNiAVDqLaeKIh~tg--LK 480 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQH--AGPVLVCAPSNIAVDQLAEKIHKTG--LK 480 (935)
T ss_pred hhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHhc--CCceEEEcccchhHHHHHHHHHhcC--ce
Confidence 4889999999998886 55679999999999999999998888863 689999999865 788888777643 55
Q ss_pred EEEEcCChhH----------------------HHHHHHHH----------------------HhhcCCccEEecCHHHHH
Q 003311 192 AVVYDGRPDE----------------------RKAMREEF----------------------FSERGRFNVLITHYDLIM 227 (832)
Q Consensus 192 v~~~~g~~~~----------------------r~~~~~~~----------------------~~~~~~~dVvItTye~l~ 227 (832)
|+-......+ ...+...- ..-....+|+.||.-..-
T Consensus 481 VvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~Ag 560 (935)
T KOG1802|consen 481 VVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGAG 560 (935)
T ss_pred EeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEeccccc
Confidence 5433221111 00000000 000124556666643321
Q ss_pred HhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEeecc
Q 003311 228 RDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGT 274 (832)
Q Consensus 228 ~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGT 274 (832)
...|.+++|..|+||||-....+.+..--.+ ..+.+.|-|-
T Consensus 561 --d~rl~~~kfr~VLiDEaTQatEpe~LiPlvl----G~kq~VlVGD 601 (935)
T KOG1802|consen 561 --DRRLSKFKFRTVLIDEATQATEPECLIPLVL----GAKQLVLVGD 601 (935)
T ss_pred --chhhccccccEEEEecccccCCcchhhhhhh----cceeEEEecc
Confidence 2346778999999999987766655433332 3455666664
No 180
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.31 E-value=0.0089 Score=67.19 Aligned_cols=60 Identities=27% Similarity=0.389 Sum_probs=46.5
Q ss_pred EEEEeccccccccCcccCCeEEEeCCC------CC-----------hhhHHHHhhhccccCCcCcEEEEEEEeCCCHHH
Q 003311 495 MFLLSTRAGGLGLNLQTADTVIIFDSD------WN-----------PQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEE 556 (832)
Q Consensus 495 v~LlSt~agg~GLNL~~ad~VI~~D~~------wN-----------p~~~~QAigRahRiGQ~k~V~V~rLit~~siEe 556 (832)
-+++||..+...|.+.+.-.|| ||- +| |..-.||.-|++|.|.+++-..|+|.|+...+.
T Consensus 315 kvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~ 391 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEK 391 (699)
T ss_pred eEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhh
Confidence 4689999999988877665554 443 34 455668999999999999999999999866543
No 181
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.21 E-value=0.0021 Score=68.88 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=71.2
Q ss_pred CCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchH----HHHHHHHhh
Q 003311 111 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP----NWINEFSTW 186 (832)
Q Consensus 111 ~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~----qW~~E~~k~ 186 (832)
.|..+++-|+-|+--| ..|-|.-..||=|||+++..+ +++..-. ..++=||+.+..|. +|...|-++
T Consensus 74 ~g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~-a~~~AL~--G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 74 LGLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALP-AALNALQ--GKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp TS----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHH-HHHHHTT--SS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHH-HHHHHHh--cCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 3567888888887544 234488899999999998543 3443332 23667777776663 488888888
Q ss_pred CCCceEEEE-cCCh-hHHHHHHHHHHhhcCCccEEecCHHHHHHhH--HH-------HhhcCceEEEEeCCccc
Q 003311 187 APSIAAVVY-DGRP-DERKAMREEFFSERGRFNVLITHYDLIMRDR--QY-------LKKVQWIYMIVDEGHRL 249 (832)
Q Consensus 187 ~p~~~v~~~-~g~~-~~r~~~~~~~~~~~~~~dVvItTye~l~~d~--~~-------L~~~~w~~vIiDEaHri 249 (832)
+ ++.+-+. .+.. ..|+.. -..+|+.+|-..+.-|. +. .....++++||||+..+
T Consensus 145 L-Glsv~~~~~~~~~~~r~~~--------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 145 L-GLSVGIITSDMSSEERREA--------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp T-T--EEEEETTTEHHHHHHH--------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred h-hhccccCccccCHHHHHHH--------HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 8 4554444 4333 223222 24568888877665431 11 11247889999998875
No 182
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.13 E-value=0.0029 Score=73.09 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=51.7
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc-hHHHHHH
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINE 182 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl-l~qW~~E 182 (832)
...|-+-|..++.+++. +..-.|+-.++|+|||.+..-+|..+...+ ..+||++|..+ +.|-.+.
T Consensus 183 ~~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred CccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHH
Confidence 45888999999988775 223457889999999999999998888764 58999999754 7777664
No 183
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.06 E-value=0.0019 Score=61.04 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=59.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhc---CCCCCEEEEeCCCc-hHHHHHHHHhhCC-CceEEEEcCChhHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENK---GVTGPHVIVAPKAV-LPNWINEFSTWAP-SIAAVVYDGRPDERKAMRE 207 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~---~~~~p~LIV~P~sl-l~qW~~E~~k~~p-~~~v~~~~g~~~~r~~~~~ 207 (832)
+..+++..+.|+|||..+-.++..+.... ....-+.|-+|... ...+..++...+. .... ..+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~--------- 71 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---RQT--------- 71 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---TS----------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---cCC---------
Confidence 45568899999999998877777665421 11112344444332 3444444433221 0000 000
Q ss_pred HHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc--ccceEEEeeccC
Q 003311 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY--QIQRRLLLTGTP 275 (832)
Q Consensus 208 ~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l--~~~~rllLTGTP 275 (832)
..+.+..-...+....-.+|||||+|++. .......+..+ .....++|+|||
T Consensus 72 --------------~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 72 --------------SDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp --------------HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred --------------HHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 01111111233444444789999999983 24444444444 667789999999
No 184
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.04 E-value=0.0037 Score=75.42 Aligned_cols=127 Identities=10% Similarity=-0.023 Sum_probs=88.0
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEe
Q 003311 142 MGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLI 220 (832)
Q Consensus 142 mGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvI 220 (832)
.|+|||-..+.++...+..+ +.+||++|. ++..|+...|...++...+.++++.-..............+...|||
T Consensus 169 ~GSGKTevyl~~i~~~l~~G---k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IVi 245 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG---RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVV 245 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC---CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEE
Confidence 59999999999998887753 368999995 88999999999999756677788755444443333223337788999
Q ss_pred cCHHHHHHhHHHHhhcCceEEEEeCCccc--CChhh-----H-HHHHHHccccceEEEeeccCC
Q 003311 221 THYDLIMRDRQYLKKVQWIYMIVDEGHRL--KNHEC-----A-LAKTISGYQIQRRLLLTGTPI 276 (832)
Q Consensus 221 tTye~l~~d~~~L~~~~w~~vIiDEaHri--KN~~s-----k-~~kal~~l~~~~rllLTGTPl 276 (832)
-|...+.- .--+..+|||||=|.- |.... . +............++-|+||-
T Consensus 246 GtRSAvFa-----P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 246 GTRSAVFA-----PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred EcceeEEe-----ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 99887632 1225689999999874 33221 1 111113335566788899994
No 185
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.03 E-value=0.038 Score=68.50 Aligned_cols=109 Identities=23% Similarity=0.246 Sum_probs=76.6
Q ss_pred hhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCch-----HHHHHHHHhhCCCceEEEEcCChhHHH
Q 003311 129 LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-----PNWINEFSTWAPSIAAVVYDGRPDERK 203 (832)
Q Consensus 129 ~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll-----~qW~~E~~k~~p~~~v~~~~g~~~~r~ 203 (832)
.|+.+.+.+++.+.|+|||++|=-++.. ....+.+.-|+|...+ ..|..-|.+. .+..++...|....-.
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~l 1229 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDL 1229 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccch
Confidence 3556777899999999999887333221 4456788999997654 4588888887 4677777777654332
Q ss_pred HHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCCh
Q 003311 204 AMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNH 252 (832)
Q Consensus 204 ~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~ 252 (832)
.+. ..-+|+|.|++.+-.-. .. ...++.|+||.|.+...
T Consensus 1230 kl~-------~~~~vii~tpe~~d~lq-~i--Q~v~l~i~d~lh~igg~ 1268 (1674)
T KOG0951|consen 1230 KLL-------QKGQVIISTPEQWDLLQ-SI--QQVDLFIVDELHLIGGV 1268 (1674)
T ss_pred HHh-------hhcceEEechhHHHHHh-hh--hhcceEeeehhhhhccc
Confidence 222 45689999999875442 22 24678999999999753
No 186
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.84 E-value=0.012 Score=71.18 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=53.8
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc-hHHHHHHHHhh
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINEFSTW 186 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~ 186 (832)
...|-+.|..+|..++. +....++-.+.|+|||.++.+++..+...+ .++||++|.+. +.+..+.+...
T Consensus 155 ~~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 155 DPNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRG---LRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEEcCcHHHHHHHHHHHHhC
Confidence 35789999999988764 234568899999999999999888877643 38999999754 67777777653
No 187
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.83 E-value=0.0098 Score=62.04 Aligned_cols=73 Identities=23% Similarity=0.265 Sum_probs=58.6
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA 187 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~ 187 (832)
+..+||-|.+.+..|++. ..+.|.++-.-||-|||-+.+-+++.++..+. .=+-+|||.+++.+-..-+...+
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVpk~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVPKALLEQMRQMLRSRL 93 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHHHHHHHH
Confidence 568999999999999863 45678899999999999998888877776542 35678999999988777666554
No 188
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.79 E-value=0.0043 Score=62.06 Aligned_cols=78 Identities=22% Similarity=0.292 Sum_probs=55.6
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhCC----CeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc--ccccccCccc
Q 003311 438 KSGHRVLLFSQMTRLMDILEIYLKLND----FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR--AGGLGLNLQT 511 (832)
Q Consensus 438 ~~g~kvLIFsq~~~~ldiL~~~L~~~g----~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~--agg~GLNL~~ 511 (832)
..+.++|||+.+-..++.+.+.+...+ +.+.. .+ ...+..+++.|..+... +|+++. ...+|||++.
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~-q~---~~~~~~~l~~~~~~~~~---il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV-QG---SKSRDELLEEFKRGEGA---ILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE-ST---CCHHHHHHHHHCCSSSE---EEEEETTSCCGSSS--EC
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeee-cC---cchHHHHHHHHHhccCe---EEEEEecccEEEeecCCC
Confidence 456799999999999999999987653 33332 22 44688999999996543 677777 8999999996
Q ss_pred --CCeEEEeCCCC
Q 003311 512 --ADTVIIFDSDW 522 (832)
Q Consensus 512 --ad~VI~~D~~w 522 (832)
+..||+.-.|+
T Consensus 80 ~~~r~vii~glPf 92 (167)
T PF13307_consen 80 DLLRAVIIVGLPF 92 (167)
T ss_dssp ESEEEEEEES---
T ss_pred chhheeeecCCCC
Confidence 88999988886
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.78 E-value=0.0036 Score=70.30 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=52.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHH-HHHHHhhC-CCceEEEEcCChhHHHHHHHHHHhhcC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW-INEFSTWA-PSIAAVVYDGRPDERKAMREEFFSERG 214 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW-~~E~~k~~-p~~~v~~~~g~~~~r~~~~~~~~~~~~ 214 (832)
|+--..|+|||+.++.++..+... ......+++|+...+.+. ...+..-. + .
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~-~~~~~~~~l~~n~~l~~~l~~~l~~~~~~-------------------------~ 58 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNS-EEGKKVLYLCGNHPLRNKLREQLAKKYNP-------------------------K 58 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhcc-ccCCceEEEEecchHHHHHHHHHhhhccc-------------------------c
Confidence 566789999999999999888221 223456788886555543 33443322 1 0
Q ss_pred CccEEecCHHHHHHhHH--HHhhcCceEEEEeCCcccCC
Q 003311 215 RFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKN 251 (832)
Q Consensus 215 ~~dVvItTye~l~~d~~--~L~~~~w~~vIiDEaHriKN 251 (832)
.....+..+..+.+... ......+++|||||||++..
T Consensus 59 ~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 11122222333322211 12335789999999999976
No 190
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.74 E-value=0.018 Score=59.19 Aligned_cols=125 Identities=22% Similarity=0.209 Sum_probs=65.2
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEE
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV 193 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~ 193 (832)
+|.+-|.+++..++. ....-.+|.-..|+|||...-.++..+.. . ..++++++|..-... ++..-. .....
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~-~--g~~v~~~apT~~Aa~---~L~~~~-~~~a~ 71 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEA-A--GKRVIGLAPTNKAAK---ELREKT-GIEAQ 71 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHH-T--T--EEEEESSHHHHH---HHHHHH-TS-EE
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHh-C--CCeEEEECCcHHHHH---HHHHhh-Ccchh
Confidence 478899999998875 11223577899999999865554444433 3 257899999754322 222221 01111
Q ss_pred EEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHH------hhcCceEEEEeCCcccCChhhHHHHHHHccc-cc
Q 003311 194 VYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL------KKVQWIYMIVDEGHRLKNHECALAKTISGYQ-IQ 266 (832)
Q Consensus 194 ~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L------~~~~w~~vIiDEaHriKN~~sk~~kal~~l~-~~ 266 (832)
. ...+....... .....++||||||..+.+. .+...+.... ..
T Consensus 72 T----------------------------i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~--~~~~ll~~~~~~~ 121 (196)
T PF13604_consen 72 T----------------------------IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSR--QLARLLRLAKKSG 121 (196)
T ss_dssp E----------------------------HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHH--HHHHHHHHS-T-T
T ss_pred h----------------------------HHHHHhcCCcccccccccCCcccEEEEecccccCHH--HHHHHHHHHHhcC
Confidence 1 01000000000 0224579999999988543 3334444443 36
Q ss_pred eEEEeeccCCC
Q 003311 267 RRLLLTGTPIQ 277 (832)
Q Consensus 267 ~rllLTGTPlq 277 (832)
-+++|.|-|-|
T Consensus 122 ~klilvGD~~Q 132 (196)
T PF13604_consen 122 AKLILVGDPNQ 132 (196)
T ss_dssp -EEEEEE-TTS
T ss_pred CEEEEECCcch
Confidence 78999999865
No 191
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.50 E-value=0.038 Score=52.07 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=25.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCC
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 174 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~s 174 (832)
+...++..+.|+|||..+-.++..+... ..+++++....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~~~ 57 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASD 57 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC---CCCeEEEehhh
Confidence 5567889999999998776666555421 23555554433
No 192
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.36 E-value=0.027 Score=63.88 Aligned_cols=68 Identities=15% Similarity=0.087 Sum_probs=48.0
Q ss_pred cCCCcCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 105 EQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 105 ~~P~~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
..|..++-...+|-|.+=..-+......+++|+|-++.|+|||+.-++++.......+....-||-|.
T Consensus 7 ~l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCS 74 (755)
T KOG1131|consen 7 DLLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCS 74 (755)
T ss_pred CeeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEec
Confidence 44555555688999976655555668889999999999999999999887554444332223355554
No 193
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.25 E-value=0.022 Score=68.49 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=35.4
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHH
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI 151 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqai 151 (832)
.++||-|+.-+..+++......+|+|-+++|+|||+.-|
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLL 58 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLL 58 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHH
Confidence 578999999999999999999999999999999998754
No 194
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.10 E-value=0.0037 Score=78.17 Aligned_cols=180 Identities=27% Similarity=0.335 Sum_probs=97.9
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCc--HHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCc
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLG--KTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSI 190 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlG--KTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~ 190 (832)
..+.+||.....-..... .....++++.|+| ||+.+..+....... +.....++++|..+..+|..+...++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (866)
T COG0553 83 FILIPHQLDIALEVLNEL--ALRVLIADEVGLGDLKTIEAGAILKELLLR-GEIKRVLILVPKTLRAQWVVELLEKFNIR 159 (866)
T ss_pred cccCcchhhhhhhhhhhh--hhchhhcccccccccccccccccchHhhhh-hhhccceeccchHHHHHHHHHhhhhcccc
Confidence 456667776554333322 2226889999999 899887666555443 33457899999888999999887764221
Q ss_pred eEEEEcC-ChhHHHHHHHHHHhhcCCccEEecCHHHHHHh----HHHHhhcCc---eEEEEeCCcccCChh---------
Q 003311 191 AAVVYDG-RPDERKAMREEFFSERGRFNVLITHYDLIMRD----RQYLKKVQW---IYMIVDEGHRLKNHE--------- 253 (832)
Q Consensus 191 ~v~~~~g-~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d----~~~L~~~~w---~~vIiDEaHriKN~~--------- 253 (832)
..+...+ .......... .........+++..+..... ...+....| +++++||+|.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (866)
T COG0553 160 LAVLDKEGLRYLLKQYDA--YNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLE 237 (866)
T ss_pred chhhhhhhhhhhhhhhcc--cccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchh
Confidence 1111111 1100000000 00000000033333333332 223344456 899999999987631
Q ss_pred hHHHHHHHccc--c------ceEEEeeccCCCCCHHHHHHHHhccCCCCCCC
Q 003311 254 CALAKTISGYQ--I------QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNS 297 (832)
Q Consensus 254 sk~~kal~~l~--~------~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~ 297 (832)
......+.... . -....+++||......+++....++.+..+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 238 TLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred hhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 22233332221 1 12347899999888877777666666655544
No 195
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.04 E-value=0.034 Score=66.43 Aligned_cols=139 Identities=15% Similarity=0.142 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCC--CCCEEEEeCCCchH-HHHHHHHhhCCCceEE
Q 003311 117 AYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--TGPHVIVAPKAVLP-NWINEFSTWAPSIAAV 193 (832)
Q Consensus 117 ~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~--~~p~LIV~P~sll~-qW~~E~~k~~p~~~v~ 193 (832)
+.|..++..++. +.-.+|.-..|+|||.++..++..+....+. ...+++++|+.-.. ...+-+......+..
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 789999887776 5667999999999999988888777654322 23689999975433 233323222111100
Q ss_pred EEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH--------HHHhhcCceEEEEeCCcccCChhhHHHHHHHcccc
Q 003311 194 VYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--------QYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQI 265 (832)
Q Consensus 194 ~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~--------~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~ 265 (832)
...... ...+-..|...+.... ..-....+++||||||-.+-. ..+...+..++.
T Consensus 223 ----~~~~~~-----------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~--~l~~~ll~al~~ 285 (586)
T TIGR01447 223 ----AEALIA-----------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL--PLMAKLLKALPP 285 (586)
T ss_pred ----chhhhh-----------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH--HHHHHHHHhcCC
Confidence 000000 0000011111111000 001123689999999998843 345555677788
Q ss_pred ceEEEeeccCCC
Q 003311 266 QRRLLLTGTPIQ 277 (832)
Q Consensus 266 ~~rllLTGTPlq 277 (832)
..|++|.|-|-|
T Consensus 286 ~~rlIlvGD~~Q 297 (586)
T TIGR01447 286 NTKLILLGDKNQ 297 (586)
T ss_pred CCEEEEECChhh
Confidence 889999998754
No 196
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.056 Score=62.54 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhccCC--C-eEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 118 YQLEGLQWMLSLFNNNL--N-GILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 118 yQ~egl~wml~~~~~~~--~-gILaDemGlGKTiqaiali~~l~~~ 160 (832)
.|..++..+.....++. + -|+..+.|+|||..|..++..+...
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 34545554444443443 2 3889999999999998888776543
No 197
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.75 E-value=0.085 Score=63.77 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEE
Q 003311 119 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVY 195 (832)
Q Consensus 119 Q~egl~wml~~~~~~--~~g-ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~ 195 (832)
|...+..+...+.++ .+. ||...-|+|||..+..+...+....+... .|-..+.. +.++..- ....++.+
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-----~PCG~C~s-Cr~I~~G-~h~DviEI 93 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-----QPCGVCRA-CREIDEG-RFVDYVEM 93 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-----CCCcccHH-HHHHhcC-CCceEEEe
Confidence 445555555544433 244 78999999999999888877764322111 11111111 2222211 11223333
Q ss_pred cCChh-HHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChh-hHHHHHHHccccceEEEeec
Q 003311 196 DGRPD-ERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHE-CALAKTISGYQIQRRLLLTG 273 (832)
Q Consensus 196 ~g~~~-~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~-sk~~kal~~l~~~~rllLTG 273 (832)
..... ....++..+ ..-......-+|.++||||+|+|.+.. ..+.+.|.......+++|+.
T Consensus 94 DAas~rgVDdIReLI-----------------e~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 94 DAASNRGVDEMAALL-----------------ERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred cccccccHHHHHHHH-----------------HHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 22211 001111100 000000112368899999999996533 34566666666677788888
Q ss_pred cCCCCCHHHHH
Q 003311 274 TPIQNSLQELW 284 (832)
Q Consensus 274 TPlqN~l~EL~ 284 (832)
|-.+.-+.-|.
T Consensus 157 td~~KIp~TIr 167 (830)
T PRK07003 157 TDPQKIPVTVL 167 (830)
T ss_pred CChhhccchhh
Confidence 75444333333
No 198
>PRK04296 thymidine kinase; Provisional
Probab=95.74 E-value=0.045 Score=55.88 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=25.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
.++.-+||.|||..++.++..+... ..+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 3678899999999988887766543 346677755
No 199
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.73 E-value=0.082 Score=64.94 Aligned_cols=135 Identities=21% Similarity=0.186 Sum_probs=81.2
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCce
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 191 (832)
+..|.+-|.+++..+.. +.-.+|....|+|||.++-+++..+.... ...++++++|.........+. . +..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~~~-~~~~v~l~ApTg~AA~~L~e~---~-g~~ 391 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEELG-GLLPVGLAAPTGRAAKRLGEV---T-GLT 391 (720)
T ss_pred CCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHHcC-CCceEEEEeCchHHHHHHHHh---c-CCc
Confidence 46899999999987754 55679999999999988766666554432 124788899987665544332 1 100
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEe
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLL 271 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllL 271 (832)
. . .+ ..++...... . ...... .....++||||||+.+-.. .+...+..++...+++|
T Consensus 392 a-------~---Ti-h~lL~~~~~~--~------~~~~~~--~~~~~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rlil 448 (720)
T TIGR01448 392 A-------S---TI-HRLLGYGPDT--F------RHNHLE--DPIDCDLLIVDESSMMDTW--LALSLLAALPDHARLLL 448 (720)
T ss_pred c-------c---cH-HHHhhccCCc--c------chhhhh--ccccCCEEEEeccccCCHH--HHHHHHHhCCCCCEEEE
Confidence 0 0 00 0011000000 0 000000 1245789999999998432 34455577777889999
Q ss_pred eccCCCC
Q 003311 272 TGTPIQN 278 (832)
Q Consensus 272 TGTPlqN 278 (832)
-|-|-|-
T Consensus 449 vGD~~QL 455 (720)
T TIGR01448 449 VGDTDQL 455 (720)
T ss_pred ECccccc
Confidence 9987553
No 200
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.69 E-value=0.042 Score=59.01 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=21.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
.+.+|.-+.|+|||..|-++...+...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 456899999999999997777666543
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.69 E-value=0.061 Score=49.99 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=28.8
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN 178 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~q 178 (832)
.+.+|.-++|+|||..+..++..+.... ..++++.+......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~ 44 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEE 44 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEcccc
Confidence 4568899999999999887776554332 25677776544443
No 202
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.19 Score=57.09 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=71.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCCEEEEeCCC--chHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKA--VLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSE 212 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~-~~~p~LIV~P~s--ll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~ 212 (832)
.++.-.+|.|||.++.-++.++..... ...++.+|+=-. .-..|+ +..|+..+.+-+
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv------------------ 236 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV------------------ 236 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcce------------------
Confidence 467899999999998777776654321 123444443321 111121 444442111111
Q ss_pred cCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhh---HHHHHHHccc--cceEEEeeccCCCCCHHHHHHHH
Q 003311 213 RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC---ALAKTISGYQ--IQRRLLLTGTPIQNSLQELWSLL 287 (832)
Q Consensus 213 ~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~s---k~~kal~~l~--~~~rllLTGTPlqN~l~EL~sLl 287 (832)
.++-++..+......+ .+.++||||++.+...... .+...+.... ....|.|+||--++.+.+++.-+
T Consensus 237 -----~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 237 -----KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred -----EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 1222344443333333 3579999999998854322 3333333332 24679999998888888777766
Q ss_pred hccC
Q 003311 288 NFLL 291 (832)
Q Consensus 288 ~fL~ 291 (832)
..+.
T Consensus 310 ~~~~ 313 (388)
T PRK12723 310 SPFS 313 (388)
T ss_pred cCCC
Confidence 5543
No 203
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.39 E-value=0.074 Score=64.70 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=88.1
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCceE
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAA 192 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~v 192 (832)
.|-.-|.+|+-..+. ...+.-|+++ +|+|||-+...++..|...+ +.+|+.+=+ +.++|-.-.+..+.- .
T Consensus 669 ~LN~dQr~A~~k~L~--aedy~LI~GM-PGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVDNILiKL~~~~i--~- 739 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALA--AEDYALILGM-PGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVDNILIKLKGFGI--Y- 739 (1100)
T ss_pred hcCHHHHHHHHHHHh--ccchheeecC-CCCCchhhHHHHHHHHHHcC---CeEEEEehhhHHHHHHHHHHhccCc--c-
Confidence 677889999876654 2233335555 89999988888887777653 467777765 668887776666531 1
Q ss_pred EEEcCChhHHHHHHHHH--------------HhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHH
Q 003311 193 VVYDGRPDERKAMREEF--------------FSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAK 258 (832)
Q Consensus 193 ~~~~g~~~~r~~~~~~~--------------~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~k 258 (832)
++--|....-....+++ ........||.+|.--+- ...|....|||+|||||-.|.-+ -
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~lP-----~ 812 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILLP-----L 812 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEccccccccc-----h
Confidence 22223222111111111 111244556666644332 34456667999999999876433 2
Q ss_pred HHHccccceEEEeeccCCC
Q 003311 259 TISGYQIQRRLLLTGTPIQ 277 (832)
Q Consensus 259 al~~l~~~~rllLTGTPlq 277 (832)
.+--+.-..+..|-|-+.|
T Consensus 813 ~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 813 CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhhhhhhcceEEEeccccc
Confidence 3344455677888887654
No 204
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.32 E-value=0.2 Score=56.27 Aligned_cols=144 Identities=17% Similarity=0.307 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhccCCC---eEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHhhCCCceEEE
Q 003311 119 QLEGLQWMLSLFNNNLN---GILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKAVLPNWINEFSTWAPSIAAVV 194 (832)
Q Consensus 119 Q~egl~wml~~~~~~~~---gILaDemGlGKTiqaiali~~l~~~~~-~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~ 194 (832)
|.+++..+...+..+.. -++..+.|+|||..+..++..+..... ...|.-+..|......+..-...-.|++..+.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~ 107 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHIT 107 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEee
Confidence 55666777776666553 477999999999999999988876321 11122222232222222222222235544332
Q ss_pred EcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhh----cCceEEEEeCCcccCC-hhhHHHHHHHccccceE-
Q 003311 195 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKK----VQWIYMIVDEGHRLKN-HECALAKTISGYQIQRR- 268 (832)
Q Consensus 195 ~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~----~~w~~vIiDEaHriKN-~~sk~~kal~~l~~~~r- 268 (832)
....... +++.- .++.+.+..-..++.. -.|.+|||||||.+-. ....+.+.+...+....
T Consensus 108 ~~~~~~~------------~~~~~-~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 108 RPFDEKT------------GKFKT-AITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred ccccccc------------ccccc-cCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 1100000 00000 1122333333333332 3789999999999942 22345555655444444
Q ss_pred EEeeccC
Q 003311 269 LLLTGTP 275 (832)
Q Consensus 269 llLTGTP 275 (832)
+++|..|
T Consensus 175 iLit~~~ 181 (351)
T PRK09112 175 ILISHSS 181 (351)
T ss_pred EEEECCh
Confidence 4555444
No 205
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.22 E-value=0.086 Score=63.27 Aligned_cols=141 Identities=14% Similarity=0.144 Sum_probs=80.1
Q ss_pred chHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHH-HHHHHHhhCCCceE
Q 003311 115 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKAVLPN-WINEFSTWAPSIAA 192 (832)
Q Consensus 115 Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~-~~~p~LIV~P~sll~q-W~~E~~k~~p~~~v 192 (832)
.-+.|++++.-.+. +.-.+|.-..|+|||.+...++..+..... ...++++++|..-... -.+.+..-...+..
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 35899999976665 556799999999999998888877765432 2346788899754433 22222211111100
Q ss_pred EEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh--------HHHHhhcCceEEEEeCCcccCChhhHHHHHHHccc
Q 003311 193 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD--------RQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264 (832)
Q Consensus 193 ~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d--------~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~ 264 (832)
....+.. ...-..|...+... ...-....+++||||||..+- -..+...+..++
T Consensus 229 -----~~~~~~~-----------~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd--~~lm~~ll~al~ 290 (615)
T PRK10875 229 -----TDEQKKR-----------IPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD--LPMMARLIDALP 290 (615)
T ss_pred -----chhhhhc-----------CCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc--HHHHHHHHHhcc
Confidence 0000000 00000111111100 001122357899999999883 334555667888
Q ss_pred cceEEEeeccCCC
Q 003311 265 IQRRLLLTGTPIQ 277 (832)
Q Consensus 265 ~~~rllLTGTPlq 277 (832)
...|++|-|-|-|
T Consensus 291 ~~~rlIlvGD~~Q 303 (615)
T PRK10875 291 PHARVIFLGDRDQ 303 (615)
T ss_pred cCCEEEEecchhh
Confidence 8899999998754
No 206
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.02 E-value=0.026 Score=65.20 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=58.3
Q ss_pred EcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC-CCchHHHHHHHHhhCC----CceEEEEcCChhHHHHHHHHHHhhc
Q 003311 139 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KAVLPNWINEFSTWAP----SIAAVVYDGRPDERKAMREEFFSER 213 (832)
Q Consensus 139 aDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p----~~~v~~~~g~~~~r~~~~~~~~~~~ 213 (832)
-+.+|+|||+++.++|.+++..+ .+.+|..|- .+++..-...|..-.. -..++.+.+..-..+... .+-...
T Consensus 3 ~matgsgkt~~ma~lil~~y~kg--yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn-~fsehn 79 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKG--YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN-NFSEHN 79 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhc--hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec-ccCccC
Confidence 36799999999999999998865 345776665 4666543333221100 011122222211111100 000011
Q ss_pred CCccEEecCHHHHHHhHHH----------HhhcCceEEEEeCCccc
Q 003311 214 GRFNVLITHYDLIMRDRQY----------LKKVQWIYMIVDEGHRL 249 (832)
Q Consensus 214 ~~~dVvItTye~l~~d~~~----------L~~~~w~~vIiDEaHri 249 (832)
....|+.||.+.+..+... |...+ -+++-||||++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~k-lvfl~deahhl 124 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQK-LVFLADEAHHL 124 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCc-eEEEechhhhh
Confidence 4567999998888765322 32222 25677999998
No 207
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.13 Score=63.45 Aligned_cols=42 Identities=29% Similarity=0.260 Sum_probs=28.7
Q ss_pred cCceEEEEeCCcccCC-hhhHHHHHHHccccceEEEeeccCCC
Q 003311 236 VQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGTPIQ 277 (832)
Q Consensus 236 ~~w~~vIiDEaHriKN-~~sk~~kal~~l~~~~rllLTGTPlq 277 (832)
-+|.++||||+|+|.. ....+.+.+...+...+++|..|-..
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCch
Confidence 3688999999999943 33445566666666677777755433
No 208
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.99 E-value=0.26 Score=58.98 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.4
Q ss_pred Ce-EEEcCCCCcHHHHHHHHHHHHHH
Q 003311 135 NG-ILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 135 ~g-ILaDemGlGKTiqaiali~~l~~ 159 (832)
+. ||..+.|+|||..+..++..+..
T Consensus 39 HA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44 78999999999999988888765
No 209
>PLN03025 replication factor C subunit; Provisional
Probab=94.94 E-value=0.2 Score=55.50 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=32.1
Q ss_pred CceEEEEeCCcccCC-hhhHHHHHHHccccceEEEeeccCCCCCHHHHHH
Q 003311 237 QWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285 (832)
Q Consensus 237 ~w~~vIiDEaHriKN-~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~s 285 (832)
.|.+|||||+|.+-. ....+.+.+..+....+++|++++...-+..|-+
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 588999999999953 2334455555556667788888765443344433
No 210
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.84 E-value=2.7 Score=51.94 Aligned_cols=54 Identities=22% Similarity=0.150 Sum_probs=40.7
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCC-CCCEEEEeCC
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPK 173 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~-~~p~LIV~P~ 173 (832)
.|.|-|.++|.+ ...+.++....|+|||.+.+.-+++|+...+. +..+|+|+-+
T Consensus 9 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT 63 (721)
T PRK11773 9 SLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFT 63 (721)
T ss_pred hcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeecc
Confidence 588999999862 13455677779999999999999999975432 3457877764
No 211
>PRK06526 transposase; Provisional
Probab=94.74 E-value=0.11 Score=55.60 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=58.4
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHh
Q 003311 132 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFS 211 (832)
Q Consensus 132 ~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~ 211 (832)
.+.|.+|..+.|+|||..+.++...+...+ .+++++ ....|..++....+ .|
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~----t~~~l~~~l~~~~~-------~~-------------- 148 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFA----TAAQWVARLAAAHH-------AG-------------- 148 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC---Cchhhh----hHHHHHHHHHHHHh-------cC--------------
Confidence 477789999999999999999887776542 233332 23456665543210 00
Q ss_pred hcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChh---hHHHHHH-HccccceEEEeeccC
Q 003311 212 ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHE---CALAKTI-SGYQIQRRLLLTGTP 275 (832)
Q Consensus 212 ~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~---sk~~kal-~~l~~~~rllLTGTP 275 (832)
++... ...+ .++++|||||.|.+.... ..++..+ ..+.....++.|..|
T Consensus 149 ----------~~~~~---l~~l--~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 149 ----------RLQAE---LVKL--GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred ----------cHHHH---HHHh--ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 01111 1112 247899999999885322 2355555 334344556666555
No 212
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.56 E-value=0.34 Score=58.05 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhccCC--Ce-EEEcCCCCcHHHHHHHHHHHHHH
Q 003311 120 LEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 120 ~egl~wml~~~~~~~--~g-ILaDemGlGKTiqaiali~~l~~ 159 (832)
...+..+...+.++. ++ |+..+.|+|||..|.+++..+..
T Consensus 21 e~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 21 NHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333444444443332 44 88999999999999888877654
No 213
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.49 E-value=0.15 Score=56.16 Aligned_cols=64 Identities=19% Similarity=0.092 Sum_probs=38.8
Q ss_pred cCCCCCchH-HHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCC
Q 003311 109 LLQGGELRA-YQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 174 (832)
Q Consensus 109 ~l~~~~Lr~-yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~s 174 (832)
...|.++|. +|.-++.-++. .. -.=..|...-|+|||+-|+|...+-....+....++|-=|..
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld-~d-I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~v 286 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLD-DD-IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTV 286 (436)
T ss_pred hhhccCcccHHHHHHHHHhcC-CC-CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCc
Confidence 344444444 77777765553 11 111357788999999999877655544445555666655543
No 214
>PRK08181 transposase; Validated
Probab=94.49 E-value=0.34 Score=52.32 Aligned_cols=47 Identities=23% Similarity=0.121 Sum_probs=36.2
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
.+.+-|..++..+-.+...+.+.+|..++|+|||..+.++...+...
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 35567877776554445567788999999999999999888777664
No 215
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.47 E-value=0.48 Score=48.69 Aligned_cols=130 Identities=18% Similarity=0.232 Sum_probs=68.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEc--CChhHHHHHHHHHHhhcC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYD--GRPDERKAMREEFFSERG 214 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~--g~~~~r~~~~~~~~~~~~ 214 (832)
+|.-++|.|||.++.-+++++... ..++.+|+--.--.--.++++.|+..+.+-++. ...+..
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~------------ 69 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA------------ 69 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH------------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH------------
Confidence 578899999999998888888765 234444443222222233444443222222221 111111
Q ss_pred CccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhh---HHHHHHHcc-ccceEEEeeccCCCCCHHHHHHHHhcc
Q 003311 215 RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC---ALAKTISGY-QIQRRLLLTGTPIQNSLQELWSLLNFL 290 (832)
Q Consensus 215 ~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~s---k~~kal~~l-~~~~rllLTGTPlqN~l~EL~sLl~fL 290 (832)
+.+......+..-++++|+||=+.+..+... .+.+.+... .....|.|++|--+..+..+......+
T Consensus 70 ---------~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 70 ---------EIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp ---------HHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred ---------HHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 1122223334555689999999887654333 233333333 455678899997666666555544444
No 216
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.42 E-value=0.47 Score=58.92 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=57.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCC-CCCEEEEeCCCchHHHHHHHHhhC-CCceEEEEcCChh-HHHHHHHHHHhhc
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPKAVLPNWINEFSTWA-PSIAAVVYDGRPD-ERKAMREEFFSER 213 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~-~~p~LIV~P~sll~qW~~E~~k~~-p~~~v~~~~g~~~-~r~~~~~~~~~~~ 213 (832)
||..+.|+|||..+..+...|....+. ..| .=.|+. +..+..-. .+..++.+.+... ....++..
T Consensus 41 Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~p-Cg~C~s------C~~~~~g~~~~~dv~eidaas~~~Vd~iR~l----- 108 (824)
T PRK07764 41 LFSGPRGCGKTSSARILARSLNCVEGPTSTP-CGECDS------CVALAPGGPGSLDVTEIDAASHGGVDDAREL----- 108 (824)
T ss_pred EEECCCCCCHHHHHHHHHHHhCcccCCCCCC-CcccHH------HHHHHcCCCCCCcEEEecccccCCHHHHHHH-----
Confidence 789999999999999998888754321 111 122322 22222111 2334444443211 11111110
Q ss_pred CCccEEecCHHHHHHhHH-HHhhcCceEEEEeCCcccCChh-hHHHHHHHccccceEEEeecc
Q 003311 214 GRFNVLITHYDLIMRDRQ-YLKKVQWIYMIVDEGHRLKNHE-CALAKTISGYQIQRRLLLTGT 274 (832)
Q Consensus 214 ~~~dVvItTye~l~~d~~-~L~~~~w~~vIiDEaHriKN~~-sk~~kal~~l~~~~rllLTGT 274 (832)
..... .-..-+|.++||||+|+|.... ..+.+.|......-+++|..|
T Consensus 109 -------------~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 109 -------------RERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred -------------HHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 00000 0012368899999999995432 245556666555556666544
No 217
>CHL00181 cbbX CbbX; Provisional
Probab=94.40 E-value=0.13 Score=56.19 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=22.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
+.+.+|.-++|+|||..|-++...+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3446889999999999998887766554
No 218
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.36 E-value=0.15 Score=56.35 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=27.8
Q ss_pred HHHHHHHHhhccCC--CeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 121 EGLQWMLSLFNNNL--NGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 121 egl~wml~~~~~~~--~gILaDemGlGKTiqaiali~~l~~ 159 (832)
..+.++.....++. +.++..+.|+|||..+.+++..+..
T Consensus 22 ~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 22 EVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34444444444444 5788999999999999888877653
No 219
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.34 E-value=0.66 Score=46.10 Aligned_cols=138 Identities=18% Similarity=0.207 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHh-hCCCceEEE
Q 003311 119 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST-WAPSIAAVV 194 (832)
Q Consensus 119 Q~egl~wml~~~~~~--~~g-ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k-~~p~~~v~~ 194 (832)
|.+.+..+...+.++ .++ |+..+.|.||+..|.+++..++....... |-.... ....+.. -.|++..+-
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~------~c~~c~-~c~~~~~~~~~d~~~~~ 74 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED------PCGECR-SCRRIEEGNHPDFIIIK 74 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--------SSSH-HHHHHHTT-CTTEEEEE
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC------CCCCCH-HHHHHHhccCcceEEEe
Confidence 556666666665554 244 78899999999999999998877543322 211111 1223332 234444332
Q ss_pred EcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHh----hcCceEEEEeCCcccCC-hhhHHHHHHHccccceEE
Q 003311 195 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRL 269 (832)
Q Consensus 195 ~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~----~~~w~~vIiDEaHriKN-~~sk~~kal~~l~~~~rl 269 (832)
-.+... ...-+.+..-...+. .-.+.++|||+||+|.. ....+-+.+...+..-++
T Consensus 75 ~~~~~~-------------------~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 75 PDKKKK-------------------SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp TTTSSS-------------------SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred cccccc-------------------hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 221100 001122221112111 12588999999999953 445677888888888888
Q ss_pred EeeccCCCCCHHH
Q 003311 270 LLTGTPIQNSLQE 282 (832)
Q Consensus 270 lLTGTPlqN~l~E 282 (832)
+|+.+-..+-+.-
T Consensus 136 iL~t~~~~~il~T 148 (162)
T PF13177_consen 136 ILITNNPSKILPT 148 (162)
T ss_dssp EEEES-GGGS-HH
T ss_pred EEEECChHHChHH
Confidence 8887755444433
No 220
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.34 E-value=0.44 Score=57.42 Aligned_cols=133 Identities=22% Similarity=0.224 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhhccCC--Ce-EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHh-hCCCceEEE
Q 003311 119 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST-WAPSIAAVV 194 (832)
Q Consensus 119 Q~egl~wml~~~~~~~--~g-ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k-~~p~~~v~~ 194 (832)
|...+..+...+..+. +. |+..+.|+|||..+..++..+....+... .|-..+ ..+.++.. -+|++ +.
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-----~pCg~C-~~C~~i~~g~~~D~--ie 92 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-----TPCGEC-DNCREIEQGRFVDL--IE 92 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-----CCCCCC-HHHHHHHcCCCCCc--ee
Confidence 3334444444333332 33 78999999999999988887776422111 121111 22333332 12332 22
Q ss_pred EcCCh-hHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH-HhhcCceEEEEeCCcccCC-hhhHHHHHHHccccceEEEe
Q 003311 195 YDGRP-DERKAMREEFFSERGRFNVLITHYDLIMRDRQY-LKKVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLL 271 (832)
Q Consensus 195 ~~g~~-~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~-L~~~~w~~vIiDEaHriKN-~~sk~~kal~~l~~~~rllL 271 (832)
+.+.. .....++.. ...... -..-+|.++||||+|+|.. ....+-+.+...+..-+++|
T Consensus 93 idaas~~~VddiR~l------------------i~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL 154 (647)
T PRK07994 93 IDAASRTKVEDTREL------------------LDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 (647)
T ss_pred ecccccCCHHHHHHH------------------HHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEE
Confidence 33321 011111110 000000 0123688999999999954 23345555655555556777
Q ss_pred eccCCC
Q 003311 272 TGTPIQ 277 (832)
Q Consensus 272 TGTPlq 277 (832)
..|-.+
T Consensus 155 ~Tt~~~ 160 (647)
T PRK07994 155 ATTDPQ 160 (647)
T ss_pred ecCCcc
Confidence 755433
No 221
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.19 E-value=0.59 Score=49.97 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHhhccCC-CeEEEcCCCCcHHHHHHHHHHH
Q 003311 116 RAYQLEGLQWMLSLFNNNL-NGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 116 r~yQ~egl~wml~~~~~~~-~gILaDemGlGKTiqaiali~~ 156 (832)
.+.+..++..+......+. ..+|.-+.|+|||..+-.++..
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 3445556665554443333 3578999999999877665543
No 222
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.16 E-value=3.9 Score=50.65 Aligned_cols=54 Identities=22% Similarity=0.140 Sum_probs=40.6
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCC-CCCEEEEeCC
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPK 173 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~-~~p~LIV~P~ 173 (832)
.|.|-|.++|.+ ...+.++-...|+|||.+.+.-+++|+...+. +..+|+|+-+
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 588999999862 13455777789999999999999999976432 3457777664
No 223
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.06 E-value=0.15 Score=55.57 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=26.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCC-CCCEEEEe
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVA 171 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~-~~p~LIV~ 171 (832)
+.+.+|..++|+|||..|.++...+...... .++++.|.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 3456889999999999998887776654322 23544444
No 224
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.01 E-value=0.44 Score=56.16 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 119 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 119 Q~egl~wml~~~~~~--~~g-ILaDemGlGKTiqaiali~~l~~~ 160 (832)
|...+..+...+..+ .+. |+..+.|+|||..|..++..+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444455555544332 234 789999999999998888777654
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.93 E-value=0.78 Score=51.06 Aligned_cols=49 Identities=22% Similarity=0.172 Sum_probs=36.7
Q ss_pred CCCchHHHHHHHHHHHHhhc----cCCCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 112 GGELRAYQLEGLQWMLSLFN----NNLNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~----~~~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
++..+.++..++.++..... .+.+.+|..++|+|||..+.|++..+...
T Consensus 158 ~~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 158 PLSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34777888788876554322 35566889999999999999988888764
No 226
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.70 E-value=0.67 Score=51.59 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=73.8
Q ss_pred CchHHHHHHHHHHHHhhccCCCe-EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceE
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAA 192 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~g-ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v 192 (832)
.++|+|....+-++.. ..-.++ ++..+.|+|||..|.+++..+....+.... |-..+.....-...-.|++..
T Consensus 3 ~~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~-----~Cg~C~sC~~~~~g~HPD~~~ 76 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG-----ACGSCKGCQLLRAGSHPDNFV 76 (328)
T ss_pred cCCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC-----CCCCCHHHHHHhcCCCCCEEE
Confidence 3588999888888875 333344 578999999999999999888764322111 212222222211222344443
Q ss_pred EEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHh----hcCceEEEEeCCcccCC-hhhHHHHHHHccccce
Q 003311 193 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQIQR 267 (832)
Q Consensus 193 ~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~----~~~w~~vIiDEaHriKN-~~sk~~kal~~l~~~~ 267 (832)
+.-.+.... ..-+.++.-...+. .-.+.++||||||+|.. ....+-+.+..-+..-
T Consensus 77 i~~~~~~~~-------------------i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~ 137 (328)
T PRK05707 77 LEPEEADKT-------------------IKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDT 137 (328)
T ss_pred EeccCCCCC-------------------CCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCe
Confidence 322211100 00111211111111 13588999999999953 3345666666655555
Q ss_pred EEEeeccC
Q 003311 268 RLLLTGTP 275 (832)
Q Consensus 268 rllLTGTP 275 (832)
.++|+.+-
T Consensus 138 ~fiL~t~~ 145 (328)
T PRK05707 138 VLLLISHQ 145 (328)
T ss_pred EEEEEECC
Confidence 55555543
No 227
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.64 E-value=0.78 Score=52.91 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=67.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHH-HhcCCCCCEEEEeCCCchHHHHHHHHhhCC--CceEEEEcCChhHHHHHHHHHHhh
Q 003311 136 GILADEMGLGKTIQTIALIAYLL-ENKGVTGPHVIVAPKAVLPNWINEFSTWAP--SIAAVVYDGRPDERKAMREEFFSE 212 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~-~~~~~~~p~LIV~P~sll~qW~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~ 212 (832)
.+++-.+|.|||.+++.++.++. ... ..++.+|.--.--..-..++..|+. ++.+.
T Consensus 224 i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~------------------- 282 (424)
T PRK05703 224 VALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRIGAVEQLKTYAKIMGIPVE------------------- 282 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHHHHHHHHHHHHHHhCCceE-------------------
Confidence 36788999999999888877765 322 1234444321100000122333321 11111
Q ss_pred cCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhh---HHHHHHHc--cccceEEEeeccCCCCCHHHHHHHH
Q 003311 213 RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC---ALAKTISG--YQIQRRLLLTGTPIQNSLQELWSLL 287 (832)
Q Consensus 213 ~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~s---k~~kal~~--l~~~~rllLTGTPlqN~l~EL~sLl 287 (832)
++.+..-+......+. .+++||||-+-+...... .+...+.. ......++|++|+-.+.+.+++..+
T Consensus 283 ------~~~~~~~l~~~l~~~~--~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 283 ------VVYDPKELAKALEQLR--DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred ------ccCCHHhHHHHHHHhC--CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 1122222222222222 579999999876543222 22233331 2335579999999888888888877
Q ss_pred hccCC
Q 003311 288 NFLLP 292 (832)
Q Consensus 288 ~fL~p 292 (832)
..+.+
T Consensus 355 ~~~~~ 359 (424)
T PRK05703 355 SRLPL 359 (424)
T ss_pred CCCCC
Confidence 76654
No 228
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.52 E-value=1.4 Score=49.94 Aligned_cols=123 Identities=14% Similarity=0.202 Sum_probs=66.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC-CC---chHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhh
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KA---VLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSE 212 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P-~s---ll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~ 212 (832)
.|.-.+|+|||..+..++..+...+ ..+++|.- .. .+.||.. |+..
T Consensus 245 ~LVGptGvGKTTTiaKLA~~L~~~G---kkVglI~aDt~RiaAvEQLk~----yae~----------------------- 294 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQD----YVKT----------------------- 294 (436)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcC---CcEEEEecCCcchHHHHHHHH----Hhhh-----------------------
Confidence 5788899999999888877665432 24444443 22 3444442 3211
Q ss_pred cCCccEE-ecCHHHHHHhHHHHhh-cCceEEEEeCCcccCChhhH---HHHHHHcccc-ceEEEeeccCCCCCHHHHHHH
Q 003311 213 RGRFNVL-ITHYDLIMRDRQYLKK-VQWIYMIVDEGHRLKNHECA---LAKTISGYQI-QRRLLLTGTPIQNSLQELWSL 286 (832)
Q Consensus 213 ~~~~dVv-ItTye~l~~d~~~L~~-~~w~~vIiDEaHriKN~~sk---~~kal~~l~~-~~rllLTGTPlqN~l~EL~sL 286 (832)
..+.++ +.+...+......+.. .++++||||-+=+..+.... +.+.+..... ...|.|+||--.+.+.++...
T Consensus 295 -lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~ 373 (436)
T PRK11889 295 -IGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 373 (436)
T ss_pred -cCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHH
Confidence 112222 2344444444444443 36899999988765433322 3333322222 334668888666666666555
Q ss_pred Hhcc
Q 003311 287 LNFL 290 (832)
Q Consensus 287 l~fL 290 (832)
++.+
T Consensus 374 F~~~ 377 (436)
T PRK11889 374 FKDI 377 (436)
T ss_pred hcCC
Confidence 5543
No 229
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.51 E-value=0.87 Score=51.10 Aligned_cols=46 Identities=28% Similarity=0.194 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHHHhhcc---CCCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 115 LRAYQLEGLQWMLSLFNN---NLNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 115 Lr~yQ~egl~wml~~~~~---~~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
=|+.|.+.+...+..... ..+.+|..+.|+|||..+-+++..+...
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 377888777666654222 2456889999999999988888776543
No 230
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.44 E-value=0.93 Score=51.19 Aligned_cols=42 Identities=19% Similarity=0.066 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhccC--CCe-EEEcCCCCcHHHHHHHHHHHHHH
Q 003311 118 YQLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 118 yQ~egl~wml~~~~~~--~~g-ILaDemGlGKTiqaiali~~l~~ 159 (832)
-|...+..+...+..+ .++ ++..+.|+|||..+-+++..+..
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 3455555555544333 345 78999999999999888877653
No 231
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=93.44 E-value=0.5 Score=45.95 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=37.2
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCccc--CCeEEEeCCCC
Q 003311 467 FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQT--ADTVIIFDSDW 522 (832)
Q Consensus 467 ~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~--ad~VI~~D~~w 522 (832)
.+.+.| ....+...+++.|...... .+|+++....+|||++. +..||+.-.|+
T Consensus 25 ~i~~e~-~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQG-EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeC-CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 334444 3344578899999864322 36777777999999987 78899887664
No 232
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=93.31 E-value=1.1 Score=51.63 Aligned_cols=127 Identities=20% Similarity=0.280 Sum_probs=94.0
Q ss_pred cchHHHHHH-HHHhhh--hcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 003311 423 SGKFELLDR-LLPKLR--KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 499 (832)
Q Consensus 423 S~Kl~~L~~-lL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlS 499 (832)
..++....+ +|+.+. ....++|||..+---.=.|..+|+..++.|+.++--++..+-..+-..|..+..+ ++|+|
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEE
Confidence 446666555 778777 3446899998765555567889999999999999999999999999999998754 67777
Q ss_pred cccc-ccccCcccCCeEEEeCCCCChhhHHHHhhhccccCC----cCcEEEEEEEeC
Q 003311 500 TRAG-GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQ----KKEVRVFVLVSV 551 (832)
Q Consensus 500 t~ag-g~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ----~k~V~V~rLit~ 551 (832)
-|+- =.=..+.++.+||+|.+|-+|.-|...+.-...-.+ ..++.|.-|.+.
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 6652 233456779999999999999999887755444332 334555555554
No 233
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.20 E-value=0.26 Score=53.30 Aligned_cols=42 Identities=19% Similarity=0.012 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhc--cCCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 118 YQLEGLQWMLSLFN--NNLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 118 yQ~egl~wml~~~~--~~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
+|...|+-+..... ...+-++..+.|+|||-+++++...|..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 78777776665433 3344578999999999999999988765
No 234
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.06 E-value=1.2 Score=47.40 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhc---cC-CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHh
Q 003311 117 AYQLEGLQWMLSLFN---NN-LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 185 (832)
Q Consensus 117 ~yQ~egl~wml~~~~---~~-~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 185 (832)
+.|..++..+..... .+ .+-+|....|+|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEE----EHHHHHHHHHH
Confidence 456666666655332 22 3458899999999999999998887642 244554 34566655543
No 235
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.04 E-value=26 Score=43.46 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=21.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
..|.||.-+.|+|||..+-+++..+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999998777766654
No 236
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.00 E-value=0.55 Score=48.76 Aligned_cols=27 Identities=30% Similarity=0.042 Sum_probs=21.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
+.+.+|..+.|+|||..+.++..++..
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 445678999999999999887776654
No 237
>PF13245 AAA_19: Part of AAA domain
Probab=92.98 E-value=0.34 Score=41.83 Aligned_cols=41 Identities=27% Similarity=0.238 Sum_probs=32.4
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHh--cCCCCCEEEEeCCCch
Q 003311 135 NGILADEMGLGKTIQTIALIAYLLEN--KGVTGPHVIVAPKAVL 176 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~l~~~--~~~~~p~LIV~P~sll 176 (832)
-.++-...|+|||.+++..+.++... .. ..++||++|....
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~a 54 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAA 54 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHH
Confidence 34668999999999999999988853 23 5689999997543
No 238
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.97 E-value=0.71 Score=55.23 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 119 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 119 Q~egl~wml~~~~~~--~~g-ILaDemGlGKTiqaiali~~l~~~ 160 (832)
|...+..+......+ .+. |+..+.|+|||..+.+++..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 555555555544433 334 789999999999999988877653
No 239
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.71 E-value=0.9 Score=49.93 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=26.9
Q ss_pred CceEEEEeCCcccCChh--hHHHHHHHccccceEEEeeccCC
Q 003311 237 QWIYMIVDEGHRLKNHE--CALAKTISGYQIQRRLLLTGTPI 276 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~~--sk~~kal~~l~~~~rllLTGTPl 276 (832)
...+|||||+|++.... ..+...+..+....++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 46789999999983322 23444455566677888888654
No 240
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.67 E-value=1.2 Score=49.48 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhhccC--CCe-EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEE
Q 003311 118 YQLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVV 194 (832)
Q Consensus 118 yQ~egl~wml~~~~~~--~~g-ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~ 194 (832)
.|...+..+......+ .++ ++..+.|.|||..+.+++..+....+..+. |-........-.....|++..+.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCEEEec
Confidence 4555565555554433 345 789999999999999988887654322211 22223333333334456666655
Q ss_pred EcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHh----hcCceEEEEeCCcccCC-hhhHHHHHHHccccceEE
Q 003311 195 YDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRL 269 (832)
Q Consensus 195 ~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~----~~~w~~vIiDEaHriKN-~~sk~~kal~~l~~~~rl 269 (832)
..|..- +.+.++.-...+. .-.+.++||||+|++.. ....+-+.+...+..-.+
T Consensus 85 ~~~~~i---------------------~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 85 PDGQSI---------------------KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred cccccC---------------------CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceE
Confidence 544221 1222222222221 12578999999999953 334566666665666667
Q ss_pred Eeecc
Q 003311 270 LLTGT 274 (832)
Q Consensus 270 lLTGT 274 (832)
+|+.+
T Consensus 144 Il~t~ 148 (329)
T PRK08058 144 ILLTE 148 (329)
T ss_pred EEEeC
Confidence 77665
No 241
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.65 E-value=1.1 Score=51.23 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 137 ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~ 160 (832)
++..+.|+|||..|.+++..+...
T Consensus 40 Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 40 LFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEECCCCCcHHHHHHHHHHHhCCC
Confidence 689999999999999988877654
No 242
>PF13173 AAA_14: AAA domain
Probab=92.58 E-value=0.86 Score=43.16 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=28.2
Q ss_pred CceEEEEeCCcccCChhhHHHHHHHccccceEEEeeccCC
Q 003311 237 QWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPI 276 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPl 276 (832)
+-.+|||||+|++.+....+...+... ....+++||.-.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccch
Confidence 457899999999987655555444433 467899999753
No 243
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.58 E-value=0.79 Score=55.12 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhccCC--Ce-EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 119 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 119 Q~egl~wml~~~~~~~--~g-ILaDemGlGKTiqaiali~~l~~~ 160 (832)
|...+..+...+.++. +. |+....|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5555555555544432 34 789999999999999888877653
No 244
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=92.48 E-value=0.53 Score=45.79 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=34.9
Q ss_pred EEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc--cccccCccc--CCeEEEeCCCC
Q 003311 468 LRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA--GGLGLNLQT--ADTVIIFDSDW 522 (832)
Q Consensus 468 ~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a--gg~GLNL~~--ad~VI~~D~~w 522 (832)
+.+.+... .+...+++.|+........+|+++.. .++|||++. +..||+...|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34444432 24478889998643210125555555 899999987 78999987775
No 245
>PRK08116 hypothetical protein; Validated
Probab=92.45 E-value=1.1 Score=48.31 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=27.0
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
.+.+|..++|+|||..+.+++.++... ..+++++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~ 149 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVN 149 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEE
Confidence 346889999999999999999888765 23555554
No 246
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.41 E-value=1.1 Score=53.99 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhccCC---CeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 119 QLEGLQWMLSLFNNNL---NGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 119 Q~egl~wml~~~~~~~---~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
|...+..+...+..+. .-||..+.|+|||..|..++..+...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 4444444444443332 24789999999999999998887654
No 247
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.40 E-value=1.3 Score=49.94 Aligned_cols=142 Identities=14% Similarity=0.224 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhccCC--Ce-EEEcCCCCcHHHHHHHHHHHHHHhcCCC-------CCEEEEeCCCchHHHHHHHHhhCC
Q 003311 119 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLENKGVT-------GPHVIVAPKAVLPNWINEFSTWAP 188 (832)
Q Consensus 119 Q~egl~wml~~~~~~~--~g-ILaDemGlGKTiqaiali~~l~~~~~~~-------~p~LIV~P~sll~qW~~E~~k~~p 188 (832)
|..+...+...+..+. ++ ++..+.|+||+..|.+++.+++...... ...|.+|+..-...|. ...-.|
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i--~~~~HP 101 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI--AAGAHG 101 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH--HccCCC
Confidence 5556666666555442 33 6899999999999999999998654211 1234445542222221 122246
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHh----hcCceEEEEeCCcccCC-hhhHHHHHHHcc
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGY 263 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~----~~~w~~vIiDEaHriKN-~~sk~~kal~~l 263 (832)
++.++.-...... ++..-. ++-+.++.-..++. .-.|.+|||||+|++-. ....+.+.+...
T Consensus 102 Dl~~i~~~~~~~~------------~~~~~~-I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 102 GLLTLERSWNEKG------------KRLRTV-ITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred CeEEEeccccccc------------cccccc-ccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 6555532110000 000000 12333333222222 23688999999999842 223455666655
Q ss_pred ccceEEEe-eccC
Q 003311 264 QIQRRLLL-TGTP 275 (832)
Q Consensus 264 ~~~~rllL-TGTP 275 (832)
+....++| |-.|
T Consensus 169 p~~~~~IL~t~~~ 181 (365)
T PRK07471 169 PARSLFLLVSHAP 181 (365)
T ss_pred CCCeEEEEEECCc
Confidence 44444444 4444
No 248
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.26 E-value=1.6 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHH
Q 003311 137 ILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~ 159 (832)
|+..+.|+|||..|..++..+..
T Consensus 42 Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 42 LFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred EEECCCCCCHHHHHHHHHHHhCC
Confidence 68999999999999988887764
No 249
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.20 E-value=1.4 Score=49.17 Aligned_cols=147 Identities=11% Similarity=0.035 Sum_probs=80.1
Q ss_pred CchHHHHHHHHHHHHhhccCC--Ce-EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCc
Q 003311 114 ELRAYQLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSI 190 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~--~g-ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~ 190 (832)
.++|+|....+.+...+..++ ++ +++.+.|+||+..|.+++.++....+.... |-..+..-..-..--.|++
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~-----~Cg~C~sC~~~~~g~HPD~ 76 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK-----SCGHCRGCQLMQAGTHPDY 76 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC-----CCCCCHHHHHHHcCCCCCE
Confidence 467888888888888766543 44 579999999999999999998864322111 1111211111111223555
Q ss_pred eEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHh----hcCceEEEEeCCcccCC-hhhHHHHHHHcccc
Q 003311 191 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQI 265 (832)
Q Consensus 191 ~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~----~~~w~~vIiDEaHriKN-~~sk~~kal~~l~~ 265 (832)
..+.-.+.+. ..+-+.++.-...+. .-.+.++|||+|++|.. ....+-|.+..=+.
T Consensus 77 ~~i~p~~~~~-------------------~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (334)
T PRK07993 77 YTLTPEKGKS-------------------SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPE 137 (334)
T ss_pred EEEecccccc-------------------cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCC
Confidence 4443222110 011222222222221 13688999999999953 33455666655455
Q ss_pred ceEEEeeccCCCCCHHHHH
Q 003311 266 QRRLLLTGTPIQNSLQELW 284 (832)
Q Consensus 266 ~~rllLTGTPlqN~l~EL~ 284 (832)
.-.++|++.-...=+.-+.
T Consensus 138 ~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 138 NTWFFLACREPARLLATLR 156 (334)
T ss_pred CeEEEEEECChhhChHHHH
Confidence 5556666543333333333
No 250
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.11 E-value=1.1 Score=52.83 Aligned_cols=114 Identities=19% Similarity=0.220 Sum_probs=57.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEcCChh-HHHHHHHHHHhhcCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPD-ERKAMREEFFSERGR 215 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~-~r~~~~~~~~~~~~~ 215 (832)
++..+.|+|||..+.+++..+....+... .|-..+.+...-...+.| .++...+... ....++....
T Consensus 40 Lf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-----~pC~~C~~C~~~~~~~h~--dv~eldaas~~gId~IRelie----- 107 (535)
T PRK08451 40 LFSGLRGSGKTSSARIFARALVCEQGPSS-----TPCDTCIQCQSALENRHI--DIIEMDAASNRGIDDIRELIE----- 107 (535)
T ss_pred EEECCCCCcHHHHHHHHHHHhcCCCCCCC-----CCCcccHHHHHHhhcCCC--eEEEeccccccCHHHHHHHHH-----
Confidence 78999999999999888887765332111 122222222222222222 2222222110 1111111110
Q ss_pred ccEEecCHHHHHHhHHHH-hhcCceEEEEeCCcccCCh-hhHHHHHHHccccceEEEeeccC
Q 003311 216 FNVLITHYDLIMRDRQYL-KKVQWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTP 275 (832)
Q Consensus 216 ~dVvItTye~l~~d~~~L-~~~~w~~vIiDEaHriKN~-~sk~~kal~~l~~~~rllLTGTP 275 (832)
..... ..-++.++||||||++... ...+.+.+...+..-+++|++|-
T Consensus 108 -------------~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 108 -------------QTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred -------------HHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 00000 0125789999999999542 23455556555566667777653
No 251
>PRK14974 cell division protein FtsY; Provisional
Probab=92.07 E-value=2.1 Score=47.77 Aligned_cols=115 Identities=15% Similarity=0.086 Sum_probs=57.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC----CchHHHHHHHHhhCCCceEEE-EcCChhHHHHHHHHHH
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK----AVLPNWINEFSTWAPSIAAVV-YDGRPDERKAMREEFF 210 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~----sll~qW~~E~~k~~p~~~v~~-~~g~~~~r~~~~~~~~ 210 (832)
.++....|.|||.++..++.++...+ .+++++..- ....||..-.... ++.++. ..|.. ..
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~g---~~V~li~~Dt~R~~a~eqL~~~a~~l--gv~v~~~~~g~d-p~-------- 208 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKNG---FSVVIAAGDTFRAGAIEQLEEHAERL--GVKVIKHKYGAD-PA-------- 208 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcCcHHHHHHHHHHHHHc--CCceecccCCCC-HH--------
Confidence 35789999999988877776665432 245555432 2234554333322 122211 11110 00
Q ss_pred hhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhH---HHHHHHcccc-ceEEEeeccCCC
Q 003311 211 SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECA---LAKTISGYQI-QRRLLLTGTPIQ 277 (832)
Q Consensus 211 ~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk---~~kal~~l~~-~~rllLTGTPlq 277 (832)
..+............++||||.++++.+.... +.+......+ ...+.+++|.-+
T Consensus 209 -------------~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 209 -------------AVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred -------------HHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 01111112223345789999999998654332 2222222233 345777887643
No 252
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=91.97 E-value=1.3 Score=48.34 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=29.7
Q ss_pred HHHHhhcCceEEEEeCCcccC-Chhh---HHHHHHHccccceE--EEeeccC
Q 003311 230 RQYLKKVQWIYMIVDEGHRLK-NHEC---ALAKTISGYQIQRR--LLLTGTP 275 (832)
Q Consensus 230 ~~~L~~~~w~~vIiDEaHriK-N~~s---k~~kal~~l~~~~r--llLTGTP 275 (832)
...|...+..++||||.|++- .... .+..+++.+..... +++.||+
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 356788899999999999973 3333 33344455544333 5677876
No 253
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.80 E-value=1.3 Score=52.14 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhccCC--Ce-EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 119 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 119 Q~egl~wml~~~~~~~--~g-ILaDemGlGKTiqaiali~~l~~~ 160 (832)
|...+..+......+. +. ++..+.|+|||..+.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4445555544444443 33 889999999999999988887654
No 254
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.80 E-value=0.89 Score=53.11 Aligned_cols=23 Identities=35% Similarity=0.264 Sum_probs=19.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHH
Q 003311 137 ILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~ 159 (832)
|+..+.|+|||..|-+++..+..
T Consensus 40 Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 40 IFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEECCCCCCHHHHHHHHHHHhcc
Confidence 88999999999999888776654
No 255
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.76 E-value=2.2 Score=47.23 Aligned_cols=147 Identities=12% Similarity=0.055 Sum_probs=81.1
Q ss_pred CchHHHHHHHHHHHHhhccCC--Ce-EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCc
Q 003311 114 ELRAYQLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSI 190 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~--~g-ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~ 190 (832)
.++|+|....+.+...+.+++ ++ ++..+.|+||+..|.+++.++.......+ |-.....-..-..--.|++
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~------~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE------ACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC------CCCCCHHHHHHHcCCCCCE
Confidence 577888888888887765443 34 67899999999999999988886542111 2122221111111223555
Q ss_pred eEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHh----hcCceEEEEeCCcccCC-hhhHHHHHHHcccc
Q 003311 191 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQI 265 (832)
Q Consensus 191 ~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~----~~~w~~vIiDEaHriKN-~~sk~~kal~~l~~ 265 (832)
.++.-.+.... ++-+.++.-...+. .-.+.++|||+||+|.. ....+-|.+..-+.
T Consensus 77 ~~i~p~~~~~~-------------------I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (319)
T PRK06090 77 HVIKPEKEGKS-------------------ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAP 137 (319)
T ss_pred EEEecCcCCCc-------------------CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCC
Confidence 44432210000 11222222111221 23588999999999953 33456666666566
Q ss_pred ceEEEeeccCCCCCHHHHHH
Q 003311 266 QRRLLLTGTPIQNSLQELWS 285 (832)
Q Consensus 266 ~~rllLTGTPlqN~l~EL~s 285 (832)
.-.++|+++-...-+.-+.|
T Consensus 138 ~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred CeEEEEEECChhhChHHHHh
Confidence 56666666544444444444
No 256
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.72 E-value=1.8 Score=48.05 Aligned_cols=143 Identities=17% Similarity=0.181 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHHHhhccCC--Ce-EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHh-hCCCc
Q 003311 115 LRAYQLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST-WAPSI 190 (832)
Q Consensus 115 Lr~yQ~egl~wml~~~~~~~--~g-ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k-~~p~~ 190 (832)
++|+|....+.+...+.++. ++ ++..+.|+||+..|.+++.++......... |-..+. -.+.+.. -.|++
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~-----~Cg~C~-sC~~~~~g~HPD~ 76 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ-----PCGQCH-SCHLFQAGNHPDF 76 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC-----CCCCCH-HHHHHhcCCCCCE
Confidence 57888888877777766544 45 478999999999999999988875322111 111111 1222222 23444
Q ss_pred eEEEE-cCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHh----hcCceEEEEeCCcccCC-hhhHHHHHHHccc
Q 003311 191 AAVVY-DGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQ 264 (832)
Q Consensus 191 ~v~~~-~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~----~~~w~~vIiDEaHriKN-~~sk~~kal~~l~ 264 (832)
.++.- .|.. ..-+.++.-...+. .-.+.++|||+||+|.. ....+-|.+..-+
T Consensus 77 ~~i~p~~~~~---------------------I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp 135 (325)
T PRK06871 77 HILEPIDNKD---------------------IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR 135 (325)
T ss_pred EEEccccCCC---------------------CCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCC
Confidence 43321 1110 01122221111111 13688999999999963 3345566665555
Q ss_pred cceEEEeeccCCCCCHHHHH
Q 003311 265 IQRRLLLTGTPIQNSLQELW 284 (832)
Q Consensus 265 ~~~rllLTGTPlqN~l~EL~ 284 (832)
..-.++|+.+-...-+.-+.
T Consensus 136 ~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 136 PNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred CCeEEEEEECChHhCchHHH
Confidence 56666666654333333333
No 257
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.67 E-value=1.5 Score=51.54 Aligned_cols=42 Identities=17% Similarity=0.057 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhccCC---CeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 119 QLEGLQWMLSLFNNNL---NGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 119 Q~egl~wml~~~~~~~---~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
|...+..+...+.++. ..||..+.|+|||..|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4444544444333333 45889999999999998888777653
No 258
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.62 E-value=1.1 Score=47.31 Aligned_cols=26 Identities=23% Similarity=0.010 Sum_probs=20.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
.+-+|..+.|+|||-.+.++...+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35689999999999888777766554
No 259
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.48 E-value=3.3 Score=48.54 Aligned_cols=116 Identities=23% Similarity=0.287 Sum_probs=57.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEcCChh-HHHHHHHHHHhhcC
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPD-ERKAMREEFFSERG 214 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~-~r~~~~~~~~~~~~ 214 (832)
-|+..+.|+|||..|..++..+....+ |. .-|-..+.+...-.....|+ ++.+.+... ....++..
T Consensus 38 ~Lf~Gp~G~GKTT~ArilAk~LnC~~~---~~--~~pCg~C~~C~~i~~~~~~D--v~eidaas~~~vddIR~I------ 104 (491)
T PRK14964 38 ILLVGASGVGKTTCARIISLCLNCSNG---PT--SDPCGTCHNCISIKNSNHPD--VIEIDAASNTSVDDIKVI------ 104 (491)
T ss_pred EEEECCCCccHHHHHHHHHHHHcCcCC---CC--CCCccccHHHHHHhccCCCC--EEEEecccCCCHHHHHHH------
Confidence 478999999999998888776655432 21 12333333333222223333 333333211 11111110
Q ss_pred CccEEecCHHHHHHhHHHH-hhcCceEEEEeCCcccCCh-hhHHHHHHHccccceEEEeeccCC
Q 003311 215 RFNVLITHYDLIMRDRQYL-KKVQWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTPI 276 (832)
Q Consensus 215 ~~dVvItTye~l~~d~~~L-~~~~w~~vIiDEaHriKN~-~sk~~kal~~l~~~~rllLTGTPl 276 (832)
....... ..-++.++||||+|.+... ...+.+.+...+..-+++|+.|-.
T Consensus 105 ------------ie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~ 156 (491)
T PRK14964 105 ------------LENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEV 156 (491)
T ss_pred ------------HHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 0000001 0125789999999999542 233444555445555666666543
No 260
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.27 E-value=1.4 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHH
Q 003311 137 ILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~ 159 (832)
|+..+.|+|||..|..++..+..
T Consensus 42 Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 42 LFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred EEECCCCCCHHHHHHHHHHhccc
Confidence 57999999999999988887764
No 261
>PRK05580 primosome assembly protein PriA; Validated
Probab=91.27 E-value=2.3 Score=52.17 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=71.9
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHh-CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL-NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 500 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~-~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt 500 (832)
.|||......++......|.++||.+.....+..+...|.. .|..+..++|+++..+|.+...+...+..+ ++++|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEec
Confidence 47787777777766667789999999999888777777754 478999999999999998888888776655 56677
Q ss_pred cccccccCcccCCeEEEeCC
Q 003311 501 RAGGLGLNLQTADTVIIFDS 520 (832)
Q Consensus 501 ~agg~GLNL~~ad~VI~~D~ 520 (832)
+..- =+.+.....||+-+-
T Consensus 249 rsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cHHh-cccccCCCEEEEECC
Confidence 6432 245666777776553
No 262
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=91.20 E-value=2.6 Score=52.07 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHHHHhhc--cCC-CeE-EEcCCCCcHHHHHHHHHHHHHH
Q 003311 114 ELRAYQLEGLQWMLSLFN--NNL-NGI-LADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~--~~~-~gI-LaDemGlGKTiqaiali~~l~~ 159 (832)
.=|+-|.+.|...+.-.- .+. ++| |...+|+|||.++-.++..|.+
T Consensus 758 PhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 758 PCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 358888888877666432 222 233 7999999999999888877654
No 263
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.18 E-value=0.29 Score=50.83 Aligned_cols=29 Identities=34% Similarity=0.360 Sum_probs=23.8
Q ss_pred ccCCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 131 NNNLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 131 ~~~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
.|-.|-|++.+.|.|||..+.+++..|+-
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 44556799999999999999888877754
No 264
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.11 E-value=2.8 Score=46.51 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=82.2
Q ss_pred CchHHHHHHHHHHHHhhccCC--Ce-EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCc
Q 003311 114 ELRAYQLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSI 190 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~--~g-ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~ 190 (832)
.++|+|......+...+..+. ++ ++..+.|+||+..|.+++..++........ .|+ ..+|.. ..-.|++
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~---~c~~~~--~g~HPD~ 75 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQR---TRQLIA--AGTHPDL 75 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cch---HHHHHh--cCCCCCE
Confidence 689999999998888765543 34 678999999999999999888865321111 111 111211 1123555
Q ss_pred eEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhh----cCceEEEEeCCcccCC-hhhHHHHHHHcccc
Q 003311 191 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKK----VQWIYMIVDEGHRLKN-HECALAKTISGYQI 265 (832)
Q Consensus 191 ~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~----~~w~~vIiDEaHriKN-~~sk~~kal~~l~~ 265 (832)
.++...-..... +.. .-+.-+.++.-...+.. -.+.++|||+|++|.. ....+-|.+..-+.
T Consensus 76 ~~i~~~p~~~~~------------k~~-~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 142 (319)
T PRK08769 76 QLVSFIPNRTGD------------KLR-TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSP 142 (319)
T ss_pred EEEecCCCcccc------------ccc-ccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCC
Confidence 544211000000 000 00112222222222211 2578999999999953 33456667766666
Q ss_pred ceEEEeeccCCCCCHHHHHH
Q 003311 266 QRRLLLTGTPIQNSLQELWS 285 (832)
Q Consensus 266 ~~rllLTGTPlqN~l~EL~s 285 (832)
...++|++.-...=+.-+-|
T Consensus 143 ~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 143 GRYLWLISAQPARLPATIRS 162 (319)
T ss_pred CCeEEEEECChhhCchHHHh
Confidence 66677776544444444443
No 265
>PRK06921 hypothetical protein; Provisional
Probab=90.92 E-value=1.6 Score=47.04 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=23.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
+.+.+|.-++|+|||..+.|++..+...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 4556889999999999999988877664
No 266
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.92 E-value=1.9 Score=52.19 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhccCC--Ce-EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 119 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 119 Q~egl~wml~~~~~~~--~g-ILaDemGlGKTiqaiali~~l~~~ 160 (832)
|...+..+...+..+. ++ ||..+.|+|||..+.+++..+...
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4444444444443333 34 889999999999998888776543
No 267
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.86 E-value=1.9 Score=51.10 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCCcHHHHHHHHHHHHHH
Q 003311 119 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 119 Q~egl~wml~~~~~~--~~g-ILaDemGlGKTiqaiali~~l~~ 159 (832)
|...+..+...+..+ .++ |+..+.|+|||..|-.++..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444444443332 244 78999999999999888877754
No 268
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.66 E-value=1.8 Score=47.47 Aligned_cols=116 Identities=17% Similarity=0.136 Sum_probs=61.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCC
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGR 215 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 215 (832)
-+++.+.|+|||..|.++...+..........-..| ......-..+.|++..+.-.+...
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~lel~~s~~~~--------------- 86 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC-----RSCKLIPAGNHPDFLELNPSDLRK--------------- 86 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch-----hhhhHHhhcCCCceEEecccccCC---------------
Confidence 578999999999999999998876543221111111 111222222333322222111111
Q ss_pred ccEEecCHHHHHHhHHHHh----hcCceEEEEeCCcccCC-hhhHHHHHHHccccceEEEeecc
Q 003311 216 FNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGT 274 (832)
Q Consensus 216 ~dVvItTye~l~~d~~~L~----~~~w~~vIiDEaHriKN-~~sk~~kal~~l~~~~rllLTGT 274 (832)
.+ ...+.+..-...+. ...|.+||||||..|.. ....+.+.+...+...+++|+..
T Consensus 87 ~~---i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 87 ID---IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred Cc---chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 11 11122221111111 24689999999999843 34456666666677788888764
No 269
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.60 E-value=0.89 Score=42.40 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=23.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCch
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 176 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll 176 (832)
+|.-+.|+|||..+-.++.++ ..+++.+....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhc------ccccccccccccc
Confidence 577899999998887776654 2355556555444
No 270
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=90.32 E-value=1.9 Score=45.00 Aligned_cols=27 Identities=26% Similarity=0.074 Sum_probs=21.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
+.+.+|..+.|+|||..+.++...+..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 445689999999999988777765544
No 271
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=90.12 E-value=3.3 Score=50.85 Aligned_cols=96 Identities=20% Similarity=0.212 Sum_probs=66.6
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHH----HHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMD----ILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ld----iL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
.|||-....-.+-.....|.+++|.+.....+. .+..++...|+++..++|+++..+|..++.....+..+ ++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 455554433332223346889999999876655 44555556689999999999999999999999887665 45
Q ss_pred Eecc-ccccccCcccCCeEEEeCC
Q 003311 498 LSTR-AGGLGLNLQTADTVIIFDS 520 (832)
Q Consensus 498 lSt~-agg~GLNL~~ad~VI~~D~ 520 (832)
+.|. .....+.+.....||+=+.
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~ 392 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQ 392 (681)
T ss_pred EchHHHhcccchhcccceEEEech
Confidence 5554 3555677777877776443
No 272
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.02 E-value=3.3 Score=49.56 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=19.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 137 ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~ 160 (832)
|++.+.|+|||..|-.++..+...
T Consensus 42 Lf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 42 LFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCC
Confidence 669999999999998887766543
No 273
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.85 E-value=2.1 Score=51.70 Aligned_cols=42 Identities=19% Similarity=0.011 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhccCC---CeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 119 QLEGLQWMLSLFNNNL---NGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 119 Q~egl~wml~~~~~~~---~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
|...+..+...+..+. .-|+..+.|+|||..|.+++..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 4445555555444443 23789999999999999999888653
No 274
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=89.83 E-value=2.7 Score=42.02 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=36.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 186 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 186 (832)
.+++.+.|+|||..++.++...... ..+++++.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCCHHHHHHHHHHc
Confidence 3688999999999999888776643 35789998877777766665554
No 275
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.63 E-value=0.24 Score=49.67 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=26.5
Q ss_pred CCccEEecCHHHHHHhHHH--Hh--hcCceEEEEeCCcccCC
Q 003311 214 GRFNVLITHYDLIMRDRQY--LK--KVQWIYMIVDEGHRLKN 251 (832)
Q Consensus 214 ~~~dVvItTye~l~~d~~~--L~--~~~w~~vIiDEaHriKN 251 (832)
...+|||++|.++...... +. ...-.+|||||||+|-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 5678999999999865322 21 23456899999999844
No 276
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=89.46 E-value=2.4 Score=50.75 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 137 ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~ 160 (832)
|+..+.|.|||..|.+++..+...
T Consensus 42 Lf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 42 IFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEECCCCCCHHHHHHHHHHhhccc
Confidence 789999999999999888877653
No 277
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.39 E-value=6.8 Score=44.81 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhccC--CC-eEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 119 QLEGLQWMLSLFNNN--LN-GILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 119 Q~egl~wml~~~~~~--~~-gILaDemGlGKTiqaiali~~l~~~ 160 (832)
|...+..+.....++ .+ -|+..+.|+|||..|.+++..+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444444444444443 23 3689999999999999998877653
No 278
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=89.39 E-value=0.6 Score=50.65 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhc-CCCCCEEEEeCCCc
Q 003311 115 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPKAV 175 (832)
Q Consensus 115 Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~-~~~~p~LIV~P~sl 175 (832)
|.+-|..++.+ . ..+.++-...|+|||.+.+.-+.+++..+ ..+..+|+|+++..
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~ 56 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNA 56 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHH
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHH
Confidence 45678888876 2 45556667799999999999999998876 34457899999754
No 279
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.37 E-value=2.4 Score=50.88 Aligned_cols=131 Identities=23% Similarity=0.304 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEE
Q 003311 119 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVY 195 (832)
Q Consensus 119 Q~egl~wml~~~~~~--~~g-ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~ 195 (832)
|...+..+......+ .++ |+..+-|+|||..+.+++..+....+..+. |-..+.. +.++..- ....++.+
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~-----~c~~c~~-c~~i~~g-~~~d~~ei 93 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAE-----PCNVCPP-CVEITEG-RSVDVFEI 93 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCC-----CCCccHH-HHHHhcC-CCCCeeee
Confidence 334444444443333 244 789999999999999888877653221111 2112211 2233222 23344445
Q ss_pred cCChh-HHHHHHHHHHhhcCCccEEecCHHHHHHhHHHH-hhcCceEEEEeCCcccCC-hhhHHHHHHHccccceEEEee
Q 003311 196 DGRPD-ERKAMREEFFSERGRFNVLITHYDLIMRDRQYL-KKVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLT 272 (832)
Q Consensus 196 ~g~~~-~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L-~~~~w~~vIiDEaHriKN-~~sk~~kal~~l~~~~rllLT 272 (832)
.|... ....++. +....... ..-++.++||||+|++.. ....+.+.+......-+++|.
T Consensus 94 d~~s~~~v~~ir~------------------l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~ 155 (576)
T PRK14965 94 DGASNTGVDDIRE------------------LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFA 155 (576)
T ss_pred eccCccCHHHHHH------------------HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEE
Confidence 44321 0011110 01111111 123678999999999853 233455555555555556655
Q ss_pred cc
Q 003311 273 GT 274 (832)
Q Consensus 273 GT 274 (832)
.|
T Consensus 156 t~ 157 (576)
T PRK14965 156 TT 157 (576)
T ss_pred eC
Confidence 54
No 280
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=89.30 E-value=2.5 Score=44.90 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=28.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchH------HHHHHHHh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP------NWINEFST 185 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~------qW~~E~~k 185 (832)
+.+..+.|+|||+..=+++..+-+ ...++|+.|+.++. -|..++..
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 456899999999987655444332 23455677865553 25555544
No 281
>PHA02533 17 large terminase protein; Provisional
Probab=89.29 E-value=1.2 Score=52.73 Aligned_cols=56 Identities=23% Similarity=0.131 Sum_probs=38.4
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~ 173 (832)
..|.|+|.+-+..|.. ++-.++.-.=..|||..+.+++.++....+ ...+++++|.
T Consensus 58 f~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCC
Confidence 5899999998887632 233367777899999988766655443322 2367788884
No 282
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.14 E-value=3.7 Score=46.44 Aligned_cols=123 Identities=16% Similarity=0.137 Sum_probs=61.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCC--CceEEEEcCChhHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAP--SIAAVVYDGRPDERKAMREEFF 210 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~ 210 (832)
+...+|..++|.|||.++..++..+....+. .++.+|+.-..-..=.+.+..|+. ++.+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~-------------- 201 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVK-------------- 201 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCceEecC--------------
Confidence 3445789999999999998888776543222 244444432221111222332221 12222111
Q ss_pred hhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc-----ccceEEEeeccCCCCCHHHHH
Q 003311 211 SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-----QIQRRLLLTGTPIQNSLQELW 284 (832)
Q Consensus 211 ~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l-----~~~~rllLTGTPlqN~l~EL~ 284 (832)
+...+......+. +.++|+||.+=+.-... .+...+..+ .....|+|++|--...+.+.+
T Consensus 202 -----------~~~~l~~~l~~l~--~~DlVLIDTaG~~~~d~-~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 202 -----------DGGDLQLALAELR--NKHMVLIDTIGMSQRDR-TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred -----------CcccHHHHHHHhc--CCCEEEEcCCCCCcccH-HHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 1111211112222 45889999997653222 233333322 234578899997666665553
No 283
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.06 E-value=5 Score=43.89 Aligned_cols=38 Identities=24% Similarity=0.443 Sum_probs=25.5
Q ss_pred CceEEEEeCCcccCCh-hhHHHHHHHccccceEEEeecc
Q 003311 237 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGT 274 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~-~sk~~kal~~l~~~~rllLTGT 274 (832)
...+|||||+|.+... ...+...+..+....+++++++
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeC
Confidence 3568999999999542 2345555555566667777764
No 284
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.02 E-value=3.9 Score=48.03 Aligned_cols=41 Identities=22% Similarity=0.104 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCCcHHHHHHHHHHHHHH
Q 003311 119 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 119 Q~egl~wml~~~~~~--~~g-ILaDemGlGKTiqaiali~~l~~ 159 (832)
|...+..+.....++ .++ +++.+.|+|||..|..++..+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444555555554443 244 67999999999988877766653
No 285
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=88.91 E-value=0.25 Score=58.84 Aligned_cols=164 Identities=15% Similarity=0.194 Sum_probs=97.7
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHH-HHHhh---C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWIN-EFSTW---A 187 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~-E~~k~---~ 187 (832)
....|||.+-+..|.... -....+.-..-+|||...+.++.+.+... ++|+|+|.|. .....|.. .|... .
T Consensus 15 ~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQD--PGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeC--CCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 588999999887555311 23456788899999998888888877654 5799999997 55666764 33332 2
Q ss_pred CCceEEEEc-CChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCccc----CChhhHHHHHH--
Q 003311 188 PSIAAVVYD-GRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRL----KNHECALAKTI-- 260 (832)
Q Consensus 188 p~~~v~~~~-g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHri----KN~~sk~~kal-- 260 (832)
|.+.-.+.. ........+....+ ..-.+.++...+ ...|......+|++||...+ ++.+.....+.
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f---~gg~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R 163 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRF---PGGFLYLVGANS----PSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKR 163 (557)
T ss_pred HHHHHHhCchhhcccCCchhheec---CCCEEEEEeCCC----CcccccCCcCEEEEechhhccccCccCCCHHHHHHHH
Confidence 322211111 00000011111111 112233333332 23467778899999999998 33344444444
Q ss_pred -HccccceEEEeeccCCCCCHHHHHHHH
Q 003311 261 -SGYQIQRRLLLTGTPIQNSLQELWSLL 287 (832)
Q Consensus 261 -~~l~~~~rllLTGTPlqN~l~EL~sLl 287 (832)
..|.....+++..||.......++.+.
T Consensus 164 ~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 164 TKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred HhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 455567889999999877555555444
No 286
>PRK05642 DNA replication initiation factor; Validated
Probab=88.87 E-value=3.6 Score=43.39 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=25.0
Q ss_pred ceEEEEeCCcccCCh---hhHHHHHHHcc-ccceEEEeecc
Q 003311 238 WIYMIVDEGHRLKNH---ECALAKTISGY-QIQRRLLLTGT 274 (832)
Q Consensus 238 w~~vIiDEaHriKN~---~sk~~kal~~l-~~~~rllLTGT 274 (832)
.+++|||+.|.+.+. ...+...+..+ ....++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 468999999988643 23455555444 34577888887
No 287
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.84 E-value=3.4 Score=49.82 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhccCCC--e-EEEcCCCCcHHHHHHHHHHHHHH
Q 003311 118 YQLEGLQWMLSLFNNNLN--G-ILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 118 yQ~egl~wml~~~~~~~~--g-ILaDemGlGKTiqaiali~~l~~ 159 (832)
.|...+..+...+.++.- . |+..+.|+|||..+.+++..+..
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 355566666655554432 3 78999999999999988877753
No 288
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=88.78 E-value=2.6 Score=52.18 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=72.7
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCce
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 191 (832)
+..|.+-|.+++..++. .+.-.+|....|+|||...-+++..+... ..++++++|......=..+ -. +..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~ApTg~Aa~~L~~---~~-g~~ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAALSGKAAEGLQA---ES-GIE 419 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEeCcHHHHHHHHh---cc-CCc
Confidence 46799999999987764 23346889999999998776655444332 3468888897654332111 11 110
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHH-ccccceEEE
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS-GYQIQRRLL 270 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~-~l~~~~rll 270 (832)
....+ .+...+ .+.. -.....++|||||+..+.... +...+. ......+++
T Consensus 420 a~Ti~-------~~~~~~-----------------~~~~--~~~~~~~llIvDEasMv~~~~--~~~Ll~~~~~~~~kli 471 (744)
T TIGR02768 420 SRTLA-------SLEYAW-----------------ANGR--DLLSDKDVLVIDEAGMVGSRQ--MARVLKEAEEAGAKVV 471 (744)
T ss_pred eeeHH-------HHHhhh-----------------ccCc--ccCCCCcEEEEECcccCCHHH--HHHHHHHHHhcCCEEE
Confidence 00000 000000 0000 011357899999999885432 333343 234667899
Q ss_pred eeccCCC
Q 003311 271 LTGTPIQ 277 (832)
Q Consensus 271 LTGTPlq 277 (832)
|.|=|-|
T Consensus 472 LVGD~~Q 478 (744)
T TIGR02768 472 LVGDPEQ 478 (744)
T ss_pred EECChHH
Confidence 9996643
No 289
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=88.77 E-value=4.2 Score=39.00 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=25.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~ 173 (832)
+|.-+.|+|||..+..++..+... .++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATK---GGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEECC
Confidence 577889999999998888776552 4567776664
No 290
>PRK08727 hypothetical protein; Validated
Probab=88.69 E-value=1.9 Score=45.48 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=20.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~ 160 (832)
.+|..+.|+|||-.+.++...+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5889999999998888887766553
No 291
>PRK04195 replication factor C large subunit; Provisional
Probab=88.29 E-value=3.7 Score=48.24 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=19.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l 157 (832)
....+|..+.|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3456889999999998887776543
No 292
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=88.24 E-value=3.7 Score=46.48 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=38.7
Q ss_pred HHHHHHHHh-hccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHh
Q 003311 121 EGLQWMLSL-FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 185 (832)
Q Consensus 121 egl~wml~~-~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 185 (832)
.++..++.- +..+.-.+|.-++|.|||..++.++..+... .+++|+|.-.....|......+
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs~~qi~~Ra~r 131 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEESPEQIKLRADR 131 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcCHHHHHHHHHH
Confidence 445555531 1122224789999999999988887766543 3578888765555555444433
No 293
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=88.18 E-value=7.2 Score=44.22 Aligned_cols=45 Identities=29% Similarity=0.280 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHhh-c--cCCCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 116 RAYQLEGLQWMLSLF-N--NNLNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 116 r~yQ~egl~wml~~~-~--~~~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
|+-|.+-+.-.+... . ...+.+|..+.|+|||..+-.++..+...
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 555555554444322 1 23457899999999999988888776554
No 294
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=88.17 E-value=4.6 Score=45.20 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHhhccCCCe-EEEcCCCCcHHHHHHHHHHHHHHhc
Q 003311 115 LRAYQLEGLQWMLSLFNNNLNG-ILADEMGLGKTIQTIALIAYLLENK 161 (832)
Q Consensus 115 Lr~yQ~egl~wml~~~~~~~~g-ILaDemGlGKTiqaiali~~l~~~~ 161 (832)
++|+|...-+.+......-.++ ++..+.|+|||..|..++..+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4678888777777764434455 4689999999999999998887753
No 295
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.14 E-value=3.7 Score=47.72 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=21.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~ 160 (832)
.+|..+.|+|||..+-++...+...
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~ 175 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEK 175 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4789999999999988888777654
No 296
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.12 E-value=4 Score=46.75 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=21.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~ 160 (832)
.+|..+.|+|||..+-++...+...
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3789999999999998888777664
No 297
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.05 E-value=13 Score=40.36 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=66.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC-C---CchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-K---AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEF 209 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P-~---sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~ 209 (832)
....+....|+|||..+..++..+... ..++.+|.- . ..+.||.......
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~~~~~~----------------------- 129 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDYVKTI----------------------- 129 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHHhhhc-----------------------
Confidence 445678889999998876666655432 224444443 2 2455565333221
Q ss_pred HhhcCCccEEe-cCHHHHHHhHHHHhh-cCceEEEEeCCcccCChhhHH---HHHHHcccc-ceEEEeeccCCCCCHHHH
Q 003311 210 FSERGRFNVLI-THYDLIMRDRQYLKK-VQWIYMIVDEGHRLKNHECAL---AKTISGYQI-QRRLLLTGTPIQNSLQEL 283 (832)
Q Consensus 210 ~~~~~~~dVvI-tTye~l~~d~~~L~~-~~w~~vIiDEaHriKN~~sk~---~kal~~l~~-~~rllLTGTPlqN~l~EL 283 (832)
.+.++. .+.+.+......+.. .++++||||-+=+.-.....+ .+.+..... ...|.|+||--.+...+.
T Consensus 130 -----~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 130 -----GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred -----CceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 122221 223333333333433 368999999887764322222 222222223 335678898766666666
Q ss_pred HHHHhcc
Q 003311 284 WSLLNFL 290 (832)
Q Consensus 284 ~sLl~fL 290 (832)
...++-+
T Consensus 205 ~~~f~~~ 211 (270)
T PRK06731 205 ITNFKDI 211 (270)
T ss_pred HHHhCCC
Confidence 5554443
No 298
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.05 E-value=5.1 Score=48.44 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 119 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 119 Q~egl~wml~~~~~~--~~g-ILaDemGlGKTiqaiali~~l~~~ 160 (832)
|...+..+.....++ .++ |+..+.|+|||..|..++..+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 556666666655443 233 689999999999999988877653
No 299
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=88.04 E-value=4.1 Score=47.46 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=19.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~ 160 (832)
.+|..++|+|||..+-++..++...
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~ 168 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESN 168 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHh
Confidence 4689999999998887777666553
No 300
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.86 E-value=3.4 Score=48.84 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=73.2
Q ss_pred hhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHh-CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 003311 421 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL-NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 499 (832)
Q Consensus 421 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~-~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlS 499 (832)
..|||-+....++......|.++||.+........+.+.|.. .|..+..++|.++..+|.+...+...++.+ +++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEEC
Confidence 468999988888888888899999999999888877777764 377899999999999998888777766655 5666
Q ss_pred ccccccccCcccCCeEEEeC
Q 003311 500 TRAGGLGLNLQTADTVIIFD 519 (832)
Q Consensus 500 t~agg~GLNL~~ad~VI~~D 519 (832)
|+.+- =+-+.....||+-+
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 66532 23455667777655
No 301
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=87.64 E-value=0.42 Score=58.89 Aligned_cols=110 Identities=22% Similarity=0.265 Sum_probs=71.5
Q ss_pred ccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-Cc----hHHHHHHHHhhCCCceEEEEcCChhHHHHH
Q 003311 131 NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AV----LPNWINEFSTWAPSIAAVVYDGRPDERKAM 205 (832)
Q Consensus 131 ~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sl----l~qW~~E~~k~~p~~~v~~~~g~~~~r~~~ 205 (832)
.-..+..+.+++|.|||+.+-..+.+.....+ .+.+++|+|. .+ ...|..-+.. |+++++-..|....--.
T Consensus 941 ~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-~~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd~~- 1016 (1230)
T KOG0952|consen 941 HTDLNFLLGAPTGSGKTVVAELAIFRALSYYP-GSKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPDVK- 1016 (1230)
T ss_pred ecchhhhhcCCccCcchhHHHHHHHHHhccCC-CccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCChh-
Confidence 33456788999999999998655555555444 3689999995 33 3557665543 47777777764432100
Q ss_pred HHHHHhhcCCccEEecCHHHHHHhH------HHHhhcCceEEEEeCCcccCCh
Q 003311 206 REEFFSERGRFNVLITHYDLIMRDR------QYLKKVQWIYMIVDEGHRLKNH 252 (832)
Q Consensus 206 ~~~~~~~~~~~dVvItTye~l~~d~------~~L~~~~w~~vIiDEaHriKN~ 252 (832)
.....+++|||++...... ..+. .+..+|+||.|.++..
T Consensus 1017 ------~v~~~~~~ittpek~dgi~Rsw~~r~~v~--~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1017 ------AVREADIVITTPEKWDGISRSWQTRKYVQ--SVSLIVLDEIHLLGED 1061 (1230)
T ss_pred ------heecCceEEcccccccCccccccchhhhc--cccceeecccccccCC
Confidence 1146789999998764322 1222 3457999999998653
No 302
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.38 E-value=13 Score=37.46 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~ 160 (832)
-++..+.|.|||..+..++..+...
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3679999999999999988887654
No 303
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=87.07 E-value=6.5 Score=47.12 Aligned_cols=42 Identities=19% Similarity=0.110 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhccC--CCe-EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 119 QLEGLQWMLSLFNNN--LNG-ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 119 Q~egl~wml~~~~~~--~~g-ILaDemGlGKTiqaiali~~l~~~ 160 (832)
|...+..+...+.++ .++ |+..+.|+|||..|.+++..+...
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 333444444444333 233 679999999999999998887653
No 304
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.98 E-value=4.8 Score=46.71 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=21.4
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 135 NGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
..+|..+.|+|||..+-++...+...
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~ 157 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHh
Confidence 35789999999999988888777654
No 305
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.73 E-value=14 Score=40.99 Aligned_cols=44 Identities=18% Similarity=0.080 Sum_probs=27.2
Q ss_pred CchHHHHHHHHHHHHhh----ccCCCeEEEcCCCCcHHHHHHHHHHHH
Q 003311 114 ELRAYQLEGLQWMLSLF----NNNLNGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~----~~~~~gILaDemGlGKTiqaiali~~l 157 (832)
.-++...+.+.-++... ....+.++..+.|+|||..+-+++..+
T Consensus 28 vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 34445555454444321 112456889999999999887666544
No 306
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=86.70 E-value=2.8 Score=51.14 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 137 ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~ 160 (832)
|+..+.|.|||..|-+++..+...
T Consensus 44 LF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 44 LFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred EEECCCCCcHHHHHHHHHHHhccc
Confidence 789999999999998888777653
No 307
>PRK06893 DNA replication initiation factor; Validated
Probab=86.51 E-value=5.2 Score=42.05 Aligned_cols=25 Identities=20% Similarity=-0.017 Sum_probs=20.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~ 160 (832)
-+|..+.|+|||-.+.++...+...
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3789999999999888887776554
No 308
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.43 E-value=7.6 Score=44.59 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=34.2
Q ss_pred HhhcCceEEEEeCCcccCChhhH---HHHHHHcc----ccceEEEeeccCCCCCHHHHHHHHhccC
Q 003311 233 LKKVQWIYMIVDEGHRLKNHECA---LAKTISGY----QIQRRLLLTGTPIQNSLQELWSLLNFLL 291 (832)
Q Consensus 233 L~~~~w~~vIiDEaHriKN~~sk---~~kal~~l----~~~~rllLTGTPlqN~l~EL~sLl~fL~ 291 (832)
+....+++||||=+-+.-..... +...+... +....|.|+||--+..+.+....+..+.
T Consensus 295 l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~ 360 (432)
T PRK12724 295 LARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLN 360 (432)
T ss_pred HHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCC
Confidence 34457899999976665322222 22222222 3356789999977666666666554443
No 309
>PRK04132 replication factor C small subunit; Provisional
Probab=86.37 E-value=2.8 Score=52.12 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=35.5
Q ss_pred CceEEEEeCCcccCC-hhhHHHHHHHccccceEEEeeccCCCCCHHHHHH
Q 003311 237 QWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285 (832)
Q Consensus 237 ~w~~vIiDEaHriKN-~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~s 285 (832)
++.+|||||||+|-. ....+.+.+..++...+++|+.++...-+.-|.+
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 578999999999953 3445666667777788899998876555444443
No 310
>PRK12377 putative replication protein; Provisional
Probab=86.27 E-value=6.2 Score=42.15 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=22.8
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
.+.+|..++|+|||..+.|++..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 345789999999999999999888754
No 311
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=86.27 E-value=4.7 Score=48.64 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHH----HHH-----h
Q 003311 116 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWIN----EFS-----T 185 (832)
Q Consensus 116 r~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~----E~~-----k 185 (832)
-|+=.+-|..++..|.+....+++ +=|.|||-.+..++.++....+ ..++|.+|. ++...-.. -++ .
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~ta-PRqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~~ 247 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATV-PRRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHKP 247 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEe-ccCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHHHHHHHHHHHHHHhcccc
Confidence 345555577788888877766665 4899999888766666654332 468999994 33333222 233 5
Q ss_pred hCCCce-EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHH----------HHhHHHHhhcCceEEEEeCCcccCChhh
Q 003311 186 WAPSIA-AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLI----------MRDRQYLKKVQWIYMIVDEGHRLKNHEC 254 (832)
Q Consensus 186 ~~p~~~-v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l----------~~d~~~L~~~~w~~vIiDEaHriKN~~s 254 (832)
|+|... ++...|.. ..|.+...... .+..+......++++|||||+-+...
T Consensus 248 ~fp~~~~iv~vkgg~----------------E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~~-- 309 (752)
T PHA03333 248 WFPEEFKIVTLKGTD----------------ENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNPG-- 309 (752)
T ss_pred ccCCCceEEEeeCCe----------------eEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCHH--
Confidence 676542 22233211 11222111000 11123345457899999999999762
Q ss_pred HHHHHHHcc-ccceEEEeeccCC
Q 003311 255 ALAKTISGY-QIQRRLLLTGTPI 276 (832)
Q Consensus 255 k~~kal~~l-~~~~rllLTGTPl 276 (832)
.+...+-.+ .....+++.-+|.
T Consensus 310 ~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 310 ALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHHHccCCCceEEEeCCC
Confidence 222233112 2345555555664
No 312
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=85.85 E-value=2.2 Score=51.04 Aligned_cols=145 Identities=13% Similarity=0.163 Sum_probs=77.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHH----HHHHHHhhCCCceEEEEcCChhHHHHHHHHH
Q 003311 135 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPN----WINEFSTWAPSIAAVVYDGRPDERKAMREEF 209 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~q----W~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~ 209 (832)
-.+.+-+=--|||-...++|..++.... .-.+++++|. .+... -..-+++|+|...+....|.. + ...
T Consensus 256 ~tVflVPRR~GKTwivv~iI~~ll~s~~-Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~-----I-~i~ 328 (738)
T PHA03368 256 ATVFLVPRRHGKTWFLVPLIALALATFR-GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET-----I-SFS 328 (738)
T ss_pred ceEEEecccCCchhhHHHHHHHHHHhCC-CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE-----E-EEE
Confidence 3577777889999988777776664422 2368899984 34333 344456787654443333311 0 000
Q ss_pred HhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHH--HccccceEEEeeccC-----------C
Q 003311 210 FSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTI--SGYQIQRRLLLTGTP-----------I 276 (832)
Q Consensus 210 ~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal--~~l~~~~rllLTGTP-----------l 276 (832)
+...++..+.+.|- .....+....++++||||||-++.. .+...+ ..-.....|.+|-|- +
T Consensus 329 f~nG~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~~--al~~ilp~l~~~n~k~I~ISS~Ns~~~sTSFL~nL 402 (738)
T PHA03368 329 FPDGSRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRPD--AVQTIMGFLNQTNCKIIFVSSTNTGKASTSFLYNL 402 (738)
T ss_pred ecCCCccEEEEEec----cCCCCccCCcccEEEEechhhCCHH--HHHHHHHHHhccCccEEEEecCCCCccchHHHHhh
Confidence 11001112333211 2233466678999999999999752 222222 222355667777552 3
Q ss_pred CCCHHHHHHHHhccCC
Q 003311 277 QNSLQELWSLLNFLLP 292 (832)
Q Consensus 277 qN~l~EL~sLl~fL~p 292 (832)
.|...+|.+.+.|+.+
T Consensus 403 k~a~~~lLNVVsYvCd 418 (738)
T PHA03368 403 KGAADELLNVVTYICD 418 (738)
T ss_pred cCchhhheeeEEEECh
Confidence 3444455555555543
No 313
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=85.78 E-value=8.6 Score=44.53 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=20.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~ 160 (832)
.+++..+|+|||.++..++.++...
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc
Confidence 4678999999999998888777653
No 314
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=85.75 E-value=1.9 Score=46.83 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhc---CCCCCEEEEeCC-Cch-----HHHHHHHHhhC----CCceEEEEcCCh
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENK---GVTGPHVIVAPK-AVL-----PNWINEFSTWA----PSIAAVVYDGRP 199 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~---~~~~p~LIV~P~-sll-----~qW~~E~~k~~----p~~~v~~~~g~~ 199 (832)
..-|++..++|+||+- ++..|+..+ +....+.+|+|. .++ .-|..++..=. |+-.++.-.|+
T Consensus 87 P~I~~VYGPTG~GKSq----LlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t- 161 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQ----LLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGT- 161 (369)
T ss_pred ceEEEEECCCCCCHHH----HHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccc-
Confidence 3447889999999993 444444332 445678999994 443 34887775421 22223333332
Q ss_pred hHHHHHHHHHHhhcCCccEEecCHHHHHHhH-----------HHHhhcCceEEEEeCCccc
Q 003311 200 DERKAMREEFFSERGRFNVLITHYDLIMRDR-----------QYLKKVQWIYMIVDEGHRL 249 (832)
Q Consensus 200 ~~r~~~~~~~~~~~~~~dVvItTye~l~~d~-----------~~L~~~~w~~vIiDEaHri 249 (832)
-.++.|-+||+-+..+. ..-.+...-.||+|||-.-
T Consensus 162 --------------~~P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~ 208 (369)
T PF02456_consen 162 --------------FRPKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEK 208 (369)
T ss_pred --------------ccccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHH
Confidence 24567778887775431 2234457789999998543
No 315
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.37 E-value=4.6 Score=50.76 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhh--ccCCCeEEEcCCCCcHHHHHHHHHHHHH
Q 003311 119 QLEGLQWMLSLF--NNNLNGILADEMGLGKTIQTIALIAYLL 158 (832)
Q Consensus 119 Q~egl~wml~~~--~~~~~gILaDemGlGKTiqaiali~~l~ 158 (832)
|.+-+..++... ....|.||.-|.|+|||..+=+++..+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 444477776532 2344679999999999988866665543
No 316
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.21 E-value=15 Score=43.50 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=19.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~ 160 (832)
.+|...+|.|||..+..++..+...
T Consensus 353 IaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 353 IALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3567889999999987777766554
No 317
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=85.21 E-value=1.8 Score=45.31 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=15.6
Q ss_pred CeEEEcCCCCcHHHHHHHHH
Q 003311 135 NGILADEMGLGKTIQTIALI 154 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali 154 (832)
+.||..+.|+|||..|-.+.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA 71 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIA 71 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHH
Confidence 57999999999997664333
No 318
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=85.03 E-value=8.7 Score=44.76 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhccCC--Ce-EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 119 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 119 Q~egl~wml~~~~~~~--~g-ILaDemGlGKTiqaiali~~l~~~ 160 (832)
|...+.++......+. +. |+..+.|+|||..|.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 5556666666554432 33 679999999999999998887653
No 319
>PRK09183 transposase/IS protein; Provisional
Probab=84.74 E-value=5.4 Score=42.83 Aligned_cols=29 Identities=34% Similarity=0.290 Sum_probs=23.0
Q ss_pred ccCCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 131 NNNLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 131 ~~~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
..+.+.+|..+.|+|||..+.++...+..
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34777889999999999999888655443
No 320
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=84.66 E-value=7.6 Score=39.06 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=37.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhc-------CCCCCEEEEeCCCchHHHHHHHHhhC
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENK-------GVTGPHVIVAPKAVLPNWINEFSTWA 187 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~-------~~~~p~LIV~P~sll~qW~~E~~k~~ 187 (832)
+.-++++.+.|.|||..++.++..+.... ...+++|+|..-....++.+-+....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 44478999999999999999888777521 14568899888776777777776655
No 321
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=83.88 E-value=11 Score=41.86 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHHhhccCCCe-EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 115 LRAYQLEGLQWMLSLFNNNLNG-ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 115 Lr~yQ~egl~wml~~~~~~~~g-ILaDemGlGKTiqaiali~~l~~~ 160 (832)
++|+|.....-+...+..-.++ ++..+.|+|||..|..++..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 4677888777777765544555 578999999999999998887754
No 322
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=83.75 E-value=15 Score=38.31 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=25.5
Q ss_pred CceEEEEeCCcccCChh---hHHHHHHHcc-ccceEEEeec
Q 003311 237 QWIYMIVDEGHRLKNHE---CALAKTISGY-QIQRRLLLTG 273 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~~---sk~~kal~~l-~~~~rllLTG 273 (832)
..+++|||..|.+.+.. ..+...+..+ .....+++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 57899999999998754 3444445433 4456777776
No 323
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=83.59 E-value=8.6 Score=46.19 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=20.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 136 GILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~ 159 (832)
.+|....|+|||..+.++..++..
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~ 340 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARR 340 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 578999999999988888777655
No 324
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=83.46 E-value=6.3 Score=43.94 Aligned_cols=23 Identities=22% Similarity=0.171 Sum_probs=19.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHH
Q 003311 137 ILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~ 159 (832)
+|..+.|+|||..+.+++..+..
T Consensus 40 Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 40 LFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 78999999999998888877754
No 325
>PRK13342 recombination factor protein RarA; Reviewed
Probab=83.19 E-value=8.1 Score=44.44 Aligned_cols=21 Identities=29% Similarity=0.229 Sum_probs=17.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHH
Q 003311 135 NGILADEMGLGKTIQTIALIA 155 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~ 155 (832)
+.||..+.|+|||..+-++..
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 568899999999988766654
No 326
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=82.83 E-value=7.6 Score=45.78 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=24.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 003311 6 ESKNERLTTLLEETNKLLVNLGAAVQRQ 33 (832)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 33 (832)
.++|.||+..|++...-|..|.+.|.+-
T Consensus 14 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 41 (512)
T TIGR03689 14 GARNAKLAELLKAARDKLSKLKSQLEQL 41 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999998888654
No 327
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=82.80 E-value=34 Score=33.98 Aligned_cols=135 Identities=15% Similarity=0.045 Sum_probs=68.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC-CCchHHHHHHHHhhCCCceEEEEcCCh----hHHHHHHHHHHh
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KAVLPNWINEFSTWAPSIAAVVYDGRP----DERKAMREEFFS 211 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~v~~~~g~~----~~r~~~~~~~~~ 211 (832)
.+.-..|.|||-.|+++.......+ .++++|== +.--..=...+-+.+|++.+..+.... ..........
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra~~~g---~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a-- 80 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRALGHG---YRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA-- 80 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH--
Confidence 3456679999999998887665542 35555311 110000011222333555444432211 0000000000
Q ss_pred hcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCC----hhhHHHHHHHccccceEEEeeccCCCCCHHHHHHHH
Q 003311 212 ERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN----HECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLL 287 (832)
Q Consensus 212 ~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN----~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl 287 (832)
.+.+......+....+++||+||.=..-+ ....+...+..-+..--++|||- |-+++|..+.
T Consensus 81 -----------~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr---~~p~~l~e~A 146 (159)
T cd00561 81 -----------AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGR---NAPKELIEAA 146 (159)
T ss_pred -----------HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECC---CCCHHHHHhC
Confidence 01122223445566899999999866533 23355666665566667999996 4455555555
Q ss_pred hcc
Q 003311 288 NFL 290 (832)
Q Consensus 288 ~fL 290 (832)
+++
T Consensus 147 D~V 149 (159)
T cd00561 147 DLV 149 (159)
T ss_pred cee
Confidence 443
No 328
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=82.75 E-value=7.1 Score=44.12 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=15.7
Q ss_pred CeEEEcCCCCcHHHHHHHHH
Q 003311 135 NGILADEMGLGKTIQTIALI 154 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali 154 (832)
+-||..+.|+|||-.|-.+.
T Consensus 50 SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred eeEEECCCCCCHHHHHHHHH
Confidence 45999999999997764433
No 329
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=82.49 E-value=23 Score=39.89 Aligned_cols=141 Identities=14% Similarity=0.088 Sum_probs=77.5
Q ss_pred CCCchHHHHHHHHHHHHhhccCC--CeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNL--NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPS 189 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~--~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~ 189 (832)
..--|.+|...+.-++..-..-. ..+|-...|+|||..+-.++..+ ..++..+++.. +..|+.-+++..-.
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~e-cft~~~lle~IL~~ 79 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVE-CFTYAILLEKILNK 79 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHH-hccHHHHHHHHHHH
Confidence 34678999998876665211111 12788999999998887776544 34677777743 22344333333211
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH------HHhhc-CceEEEEeCCcccCChhhHHHHHHHc
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ------YLKKV-QWIYMIVDEGHRLKNHECALAKTISG 262 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~------~L~~~-~w~~vIiDEaHriKN~~sk~~kal~~ 262 (832)
....-+.|...+- +.+.+..... ...+. .--++|+|-|..++...+.+.+.+..
T Consensus 80 ~~~~d~dg~~~~~-------------------~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~ 140 (438)
T KOG2543|consen 80 SQLADKDGDKVEG-------------------DAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFR 140 (438)
T ss_pred hccCCCchhhhhh-------------------HHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHH
Confidence 1101111111100 0111111111 11111 34589999999999888776666644
Q ss_pred c-----ccceEEEeeccCCCC
Q 003311 263 Y-----QIQRRLLLTGTPIQN 278 (832)
Q Consensus 263 l-----~~~~rllLTGTPlqN 278 (832)
+ ...-+++++.++..+
T Consensus 141 L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 141 LYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHHHhCCCceEEEEeccccHH
Confidence 3 345678888887643
No 330
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=82.42 E-value=9.7 Score=48.45 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=72.0
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCce
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 191 (832)
+..|.+-|.+++..++. .+.-.+|.-..|+|||.+. ..+..+++.. ...+++++|...... .+..-. ++
T Consensus 344 g~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~--G~~V~~~ApTGkAA~---~L~e~t-Gi- 412 (988)
T PRK13889 344 GLVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAML-GVAREAWEAA--GYEVRGAALSGIAAE---NLEGGS-GI- 412 (988)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEecCcHHHHH---HHhhcc-Cc-
Confidence 45799999999987774 1224688899999999864 4444444432 236788888754432 222111 00
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc-ccceEEE
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQRRLL 270 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l-~~~~rll 270 (832)
.. ..+. .+.. .+ .... ......++|||||+..+... .+...+... ....+++
T Consensus 413 -------~a--~TI~-sll~---~~----------~~~~--~~l~~~~vlIVDEASMv~~~--~m~~LL~~a~~~garvV 465 (988)
T PRK13889 413 -------AS--RTIA-SLEH---GW----------GQGR--DLLTSRDVLVIDEAGMVGTR--QLERVLSHAADAGAKVV 465 (988)
T ss_pred -------ch--hhHH-HHHh---hh----------cccc--cccccCcEEEEECcccCCHH--HHHHHHHhhhhCCCEEE
Confidence 00 0000 0000 00 0000 01124579999999988543 333444332 5678999
Q ss_pred eeccCCCC
Q 003311 271 LTGTPIQN 278 (832)
Q Consensus 271 LTGTPlqN 278 (832)
|.|-|-|-
T Consensus 466 LVGD~~QL 473 (988)
T PRK13889 466 LVGDPQQL 473 (988)
T ss_pred EECCHHHc
Confidence 99987554
No 331
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=82.19 E-value=5.4 Score=49.30 Aligned_cols=68 Identities=19% Similarity=0.099 Sum_probs=47.5
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCCEEEEeCCC-chHHHHHHHHhhC
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKA-VLPNWINEFSTWA 187 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~-~~~p~LIV~P~s-ll~qW~~E~~k~~ 187 (832)
.|-|-|.++|.+ .....++....|+|||.+.+.-+++|+...+ .+..+|+|+.+. ......+.+.+..
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 588999999852 2345677788999999999999999998644 345678888753 3333444444443
No 332
>PTZ00293 thymidine kinase; Provisional
Probab=81.92 E-value=15 Score=38.28 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=24.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~ 173 (832)
++..+||+|||..-|-.+...... ..+++++-|.
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp~ 41 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKYS 41 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHc---CCceEEEEec
Confidence 568899999997766655443332 4578999885
No 333
>PRK06904 replicative DNA helicase; Validated
Probab=81.91 E-value=32 Score=40.36 Aligned_cols=126 Identities=10% Similarity=0.058 Sum_probs=67.2
Q ss_pred HHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEE-EEcC---
Q 003311 122 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDG--- 197 (832)
Q Consensus 122 gl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~-~~~g--- 197 (832)
.+.-+..-+..+.=.|||.-+|+|||.-++.++....... ..|++++..-....++...+-.....+... +..|
T Consensus 210 ~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~--g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~~l 287 (472)
T PRK06904 210 DLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMAS--EKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNL 287 (472)
T ss_pred HHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCCCC
Confidence 3444443333333458999999999999887776654332 358899988776777665544332222111 1122
Q ss_pred ChhHHHHHHHHHHhhc-CCccEEe-----cCHHHHHHhHHHHhh-c-CceEEEEeCCcccC
Q 003311 198 RPDERKAMREEFFSER-GRFNVLI-----THYDLIMRDRQYLKK-V-QWIYMIVDEGHRLK 250 (832)
Q Consensus 198 ~~~~r~~~~~~~~~~~-~~~dVvI-----tTye~l~~d~~~L~~-~-~w~~vIiDEaHriK 250 (832)
+..+...+.... ... ...++.| .|...+......+.. . ..++||||=-|.+.
T Consensus 288 ~~~e~~~~~~a~-~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 288 DQQDWAKISSTV-GMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred CHHHHHHHHHHH-HHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 122222222111 111 1233444 244455444433332 2 47899999888775
No 334
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=81.87 E-value=32 Score=38.20 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=22.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
.|.-..|.|||.++..++.++... .+.++++.
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~ 149 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAA 149 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 456799999999988887776543 23455554
No 335
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=81.62 E-value=2 Score=50.80 Aligned_cols=127 Identities=16% Similarity=0.135 Sum_probs=69.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCC-----chHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHH
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA-----VLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 210 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~s-----ll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~ 210 (832)
.+.--+=--|||-..+++|+.++..-.. -.+..|+-.. +...-...+.+|+|.-.++...|..-. +.
T Consensus 205 TVFLVPRRHGKTWf~VpiIsllL~s~~g-I~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~-------~s 276 (668)
T PHA03372 205 TVFLVPRRHGKTWFIIPIISFLLKNIIG-ISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVIS-------ID 276 (668)
T ss_pred eEEEecccCCceehHHHHHHHHHHhhcC-ceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEE-------Ee
Confidence 3444567889999998888888774321 2466776632 233345567899987654332221000 00
Q ss_pred hhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEeecc
Q 003311 211 SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGT 274 (832)
Q Consensus 211 ~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGT 274 (832)
.+..+..++..|. ...+.+....|++++|||||-++...-...--+..-.....+.+|-|
T Consensus 277 ~pg~Kst~~fasc----~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 277 HRGAKSTALFASC----YNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred cCCCcceeeehhh----ccCccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCC
Confidence 0001111222220 12345677789999999999997533222222233355566777655
No 336
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=81.62 E-value=6.7 Score=45.61 Aligned_cols=33 Identities=30% Similarity=0.192 Sum_probs=24.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
.+|..+.|+|||-.+-++...+... ..+++.+.
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~ 176 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRES---GGKILYVR 176 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEee
Confidence 4789999999999988888777653 23445443
No 337
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=81.46 E-value=37 Score=39.24 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=19.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 137 ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~ 160 (832)
.++-..|+|||.++..++.++...
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC
Confidence 568899999999988888776543
No 338
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=81.46 E-value=1.7 Score=45.30 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=26.6
Q ss_pred CceEEEEeCCcccCChhhHHHHHHHccccceEEEeeccCCCCCH
Q 003311 237 QWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSL 280 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlqN~l 280 (832)
..+++||||++.+-...-.+ +........++|-|=|.|-..
T Consensus 62 ~~~~liiDE~~~~~~g~l~~---l~~~~~~~~~~l~GDp~Q~~~ 102 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGYLLL---LLSLSPAKNVILFGDPLQIPY 102 (234)
T ss_pred cCCEEEEeccccCChHHHHH---HHhhccCcceEEEECchhccC
Confidence 47899999999874322222 333344456888899988643
No 339
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=81.41 E-value=6.8 Score=47.68 Aligned_cols=97 Identities=19% Similarity=0.133 Sum_probs=65.2
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHH----HHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILE----IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~----~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
.|||-.+..-.+-.....|.+++|.+.....+..+. .++...|+++..++|+++..+|..+++....+..+ |++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~--IiV 343 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH--LVV 343 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC--EEE
Confidence 456654433222223346889999999887665544 44445589999999999999999999999887665 444
Q ss_pred EeccccccccCcccCCeEEEeCC
Q 003311 498 LSTRAGGLGLNLQTADTVIIFDS 520 (832)
Q Consensus 498 lSt~agg~GLNL~~ad~VI~~D~ 520 (832)
.+....-..+.+.....||+=+.
T Consensus 344 gT~~ll~~~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 344 GTHALIQEKVEFKRLALVIIDEQ 366 (630)
T ss_pred ecHHHHhccccccccceEEEech
Confidence 44333445567777777776443
No 340
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=81.38 E-value=47 Score=32.81 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=20.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~ 160 (832)
.++..+.|.|||..+..++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3677899999999998888777654
No 341
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=81.24 E-value=8.7 Score=41.18 Aligned_cols=67 Identities=24% Similarity=0.297 Sum_probs=46.0
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHH
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 183 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 183 (832)
.+...+...+.-....+.++.|.+|...+|.|||..++|+...+. .. ..+++++.-+.++.+++..+
T Consensus 86 ~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~--g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 86 GIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KA--GISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred chhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-Hc--CCeEEEEEHHHHHHHHHHHH
Confidence 344556666666666677788889999999999999999999888 33 23455554344444444433
No 342
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=81.19 E-value=5.2 Score=45.85 Aligned_cols=40 Identities=30% Similarity=0.253 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHH
Q 003311 117 AYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 117 ~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~ 156 (832)
.-+...+..++.+..++.|.|+-.+.|+|||..+.++..+
T Consensus 193 r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 193 RQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 4555566666667778999999999999999888876655
No 343
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=81.17 E-value=5.6 Score=48.69 Aligned_cols=110 Identities=19% Similarity=0.193 Sum_probs=87.0
Q ss_pred EEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhh
Q 003311 357 LKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKL 436 (832)
Q Consensus 357 v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l 436 (832)
....++..|...+..+.... -+.+++|..+. ..|||.+....++.+.
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~-----------------------~~~~~~Ll~Gv----------TGSGKTEvYl~~i~~~ 241 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL-----------------------GGFAPFLLDGV----------TGSGKTEVYLEAIAKV 241 (730)
T ss_pred cccccCHHHHHHHHHHHHhc-----------------------ccccceeEeCC----------CCCcHHHHHHHHHHHH
Confidence 34567888888888776541 23466676654 5799999999999999
Q ss_pred hhcCCeEEEEecchhHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 437 RKSGHRVLLFSQMTRLMDILEIYLKLN-DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 437 ~~~g~kvLIFsq~~~~ldiL~~~L~~~-g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
.+.|+.+||-..-......+...|+.+ |.++..+|++.+..+|...-.+...+... | ++-|++
T Consensus 242 L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~--v-VIGtRS 305 (730)
T COG1198 242 LAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEAR--V-VIGTRS 305 (730)
T ss_pred HHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCce--E-EEEech
Confidence 999999999999988877777777654 78999999999999999999999887754 4 444444
No 344
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=80.86 E-value=21 Score=39.58 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=68.3
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceE
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAA 192 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v 192 (832)
+.+-+.|.+.+..++ ..+.+.+++-.+|+|||-..-+++.++....+ ..++++|-... |+. ++...+
T Consensus 131 g~~~~~~~~~L~~~v---~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~-~~rivtIEd~~-------El~--~~~~~~ 197 (319)
T PRK13894 131 GIMTAAQREAIIAAV---RAHRNILVIGGTGSGKTTLVNAIINEMVIQDP-TERVFIIEDTG-------EIQ--CAAENY 197 (319)
T ss_pred CCCCHHHHHHHHHHH---HcCCeEEEECCCCCCHHHHHHHHHHhhhhcCC-CceEEEEcCCC-------ccc--cCCCCE
Confidence 345556665554444 46778899999999999776666665533222 22344443322 111 111122
Q ss_pred EEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEee
Q 003311 193 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLT 272 (832)
Q Consensus 193 ~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLT 272 (832)
+.+... .. .++..+.+ ..-..++++||+.|.= .. ....++..+.+.+.-.+
T Consensus 198 v~~~~~---------------~~-----~~~~~ll~---~aLR~~PD~IivGEiR---~~--Ea~~~l~A~~tGh~G~~- 248 (319)
T PRK13894 198 VQYHTS---------------ID-----VNMTALLK---TTLRMRPDRILVGEVR---GP--EALDLLMAWNTGHEGGA- 248 (319)
T ss_pred EEEecC---------------CC-----CCHHHHHH---HHhcCCCCEEEEeccC---CH--HHHHHHHHHHcCCCceE-
Confidence 222110 00 13443332 2335789999999963 33 23445666666654333
Q ss_pred ccCCCCCHHHHHH
Q 003311 273 GTPIQNSLQELWS 285 (832)
Q Consensus 273 GTPlqN~l~EL~s 285 (832)
+|-.-|+..+...
T Consensus 249 tTiHa~s~~~ai~ 261 (319)
T PRK13894 249 ATLHANNAKAGLD 261 (319)
T ss_pred EEECCCCHHHHHH
Confidence 4555666665443
No 345
>PHA02244 ATPase-like protein
Probab=80.76 E-value=18 Score=40.80 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=26.7
Q ss_pred hhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 129 LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 129 ~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
+...+.+.+|..++|+|||..+-++...+ ..|++.|.
T Consensus 115 ~l~~~~PVLL~GppGtGKTtLA~aLA~~l------g~pfv~In 151 (383)
T PHA02244 115 IVNANIPVFLKGGAGSGKNHIAEQIAEAL------DLDFYFMN 151 (383)
T ss_pred HHhcCCCEEEECCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 33458889999999999998887766542 23655553
No 346
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=80.73 E-value=7.3 Score=47.64 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCCEEEEeCC-CchHHHHHHHHhhC
Q 003311 115 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPK-AVLPNWINEFSTWA 187 (832)
Q Consensus 115 Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~-~~~p~LIV~P~-sll~qW~~E~~k~~ 187 (832)
|.|-|.++|.+ ...+.++-...|+|||.+.+.-+.+++...+ .+..+|+|+.+ ....+-...+.+..
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889988853 2345677788999999999999999997533 34457777664 44444555554443
No 347
>CHL00095 clpC Clp protease ATP binding subunit
Probab=80.72 E-value=6.7 Score=49.29 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=20.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLL 158 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~ 158 (832)
..|.||..+.|+|||..+-+++..+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 44679999999999999877766554
No 348
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=80.67 E-value=6.6 Score=39.56 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=38.3
Q ss_pred HHHHhhcCceEEEEeCCcccCCh----hhHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhcc
Q 003311 230 RQYLKKVQWIYMIVDEGHRLKNH----ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFL 290 (832)
Q Consensus 230 ~~~L~~~~w~~vIiDEaHriKN~----~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL 290 (832)
...+..-.|++||+||.-..-+. ...+...+..-+..--++|||. +-+.+|..+.+++
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR---~~p~~l~e~AD~V 151 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGR---GCPQDLLELADLV 151 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECC---CCCHHHHHhCcee
Confidence 44555678999999998654332 2345556665566668999997 4456666655554
No 349
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=80.58 E-value=7.7 Score=48.96 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhc--cCCCeEEEcCCCCcHHHHHHHHHHHHH
Q 003311 119 QLEGLQWMLSLFN--NNLNGILADEMGLGKTIQTIALIAYLL 158 (832)
Q Consensus 119 Q~egl~wml~~~~--~~~~gILaDemGlGKTiqaiali~~l~ 158 (832)
|..-+..++.... ...+.||.-+.|+|||..+-+++..+.
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3334667766432 345679999999999998877766553
No 350
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=80.25 E-value=68 Score=36.62 Aligned_cols=135 Identities=18% Similarity=0.159 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhh
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSE 212 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~ 212 (832)
++-..|..++|.|||.+..-+++.+....+..+..||-+...=+ --.++++.++. +.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI-GA~EQLk~Ya~--------------------im-- 259 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI-GAVEQLKTYAD--------------------IM-- 259 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh-hHHHHHHHHHH--------------------Hh--
Confidence 33346789999999977655555444222223233443322111 11222332221 11
Q ss_pred cCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCc-ccCChhh--HHHHHHHc-cccceEEEeeccCCCCCHHHHHHHHh
Q 003311 213 RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGH-RLKNHEC--ALAKTISG-YQIQRRLLLTGTPIQNSLQELWSLLN 288 (832)
Q Consensus 213 ~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaH-riKN~~s--k~~kal~~-l~~~~rllLTGTPlqN~l~EL~sLl~ 288 (832)
+-+-.++.+..-+......+.. .++|.||=+- .-++... .+...+.. .....-|.||+|--...+.+++.-+.
T Consensus 260 -~vp~~vv~~~~el~~ai~~l~~--~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~ 336 (407)
T COG1419 260 -GVPLEVVYSPKELAEAIEALRD--CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS 336 (407)
T ss_pred -CCceEEecCHHHHHHHHHHhhc--CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc
Confidence 2222344555555554454544 4889999543 3344221 11111111 24456699999998889999988888
Q ss_pred ccCCC
Q 003311 289 FLLPT 293 (832)
Q Consensus 289 fL~p~ 293 (832)
.+...
T Consensus 337 ~~~i~ 341 (407)
T COG1419 337 LFPID 341 (407)
T ss_pred cCCcc
Confidence 77554
No 351
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=79.90 E-value=4.8 Score=47.52 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=35.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcC---CCCCEEEEeCCCchHHHHH
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKG---VTGPHVIVAPKAVLPNWIN 181 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~---~~~p~LIV~P~sll~qW~~ 181 (832)
.|+-...|+|||.+|+-=++||+.... ..+|+||+.|+.++.....
T Consensus 229 lVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 229 LVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred EEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 366789999999999887888876542 3568999999988765543
No 352
>PRK14873 primosome assembly protein PriA; Provisional
Probab=79.87 E-value=8.4 Score=47.03 Aligned_cols=79 Identities=15% Similarity=0.070 Sum_probs=67.7
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC-C-CeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEe
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-D-FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS 499 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-g-~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlS 499 (832)
.|+|-+.+.+++.+....|+.+||...-......+...|..+ | ..+..+|+..+..+|.+...+...+... ++|-
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~---IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR---VVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc---EEEE
Confidence 589999999999999999999999999998888888888654 4 6799999999999999999888887655 5667
Q ss_pred cccc
Q 003311 500 TRAG 503 (832)
Q Consensus 500 t~ag 503 (832)
|+++
T Consensus 247 tRSA 250 (665)
T PRK14873 247 TRSA 250 (665)
T ss_pred ccee
Confidence 7763
No 353
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=79.78 E-value=16 Score=41.44 Aligned_cols=49 Identities=22% Similarity=0.133 Sum_probs=34.7
Q ss_pred CCchHHHHHHHHHHHHhhc---cCCCeEEEcCCCCcHHHHHHHHHHHHHHhc
Q 003311 113 GELRAYQLEGLQWMLSLFN---NNLNGILADEMGLGKTIQTIALIAYLLENK 161 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~---~~~~gILaDemGlGKTiqaiali~~l~~~~ 161 (832)
..-|+-|.+.+...+.-.- .+.|.++...+|+|||.++--++..+....
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 4567778777765554322 233578899999999999888777776653
No 354
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=79.73 E-value=14 Score=37.87 Aligned_cols=141 Identities=12% Similarity=0.103 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHH-HHHHH--hhCCCceEEEEcCChhHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW-INEFS--TWAPSIAAVVYDGRPDERKAMREEF 209 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW-~~E~~--k~~p~~~v~~~~g~~~~r~~~~~~~ 209 (832)
....++.-..|.|||-.|+++.......+ .+++||== +-..| ..|.. +.+|.+.+..+.........-....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---~~V~ivQF--lKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~ 96 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHG---KKVGVVQF--IKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERD 96 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCC---CeEEEEEE--ecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHH
Confidence 44567889999999999999887666543 35555521 11122 12222 2223333332221100000000000
Q ss_pred HhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCC----hhhHHHHHHHccccceEEEeeccCCCCCHHHHHH
Q 003311 210 FSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN----HECALAKTISGYQIQRRLLLTGTPIQNSLQELWS 285 (832)
Q Consensus 210 ~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN----~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~s 285 (832)
. -.--+.+..-...+..-.|++||+||.-..-+ +...+...+..-+..--++|||- +-+.+|..
T Consensus 97 --------~-~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR---~~p~~Lie 164 (191)
T PRK05986 97 --------I-AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGR---GAPRELIE 164 (191)
T ss_pred --------H-HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECC---CCCHHHHH
Confidence 0 00001122224456667899999999866544 23445555555555668999997 55556655
Q ss_pred HHhcc
Q 003311 286 LLNFL 290 (832)
Q Consensus 286 Ll~fL 290 (832)
+.+++
T Consensus 165 ~ADlV 169 (191)
T PRK05986 165 AADLV 169 (191)
T ss_pred hCchh
Confidence 55544
No 355
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=79.50 E-value=29 Score=37.99 Aligned_cols=145 Identities=12% Similarity=0.067 Sum_probs=72.9
Q ss_pred CchHHHHHHHHHHHHhhccCC--CeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCce
Q 003311 114 ELRAYQLEGLQWMLSLFNNNL--NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~--~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 191 (832)
.|...|..++..+.....++. +++|-.. |.||+..|..++..+........+ |-.....-..-...-.|++.
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~~~~~~-----~Cg~C~~C~~i~~~~HPD~~ 75 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQKEGVL-----PCGHCRSCRLIEQGEFSDVT 75 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCCCCCCC-----CCCCCHHHHHHhcCCCCCee
Confidence 456677788877777665553 4544433 689999998888888764321111 11111111111112235544
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhh----cCceEEEEeCCcccCC-hhhHHHHHHHccccc
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKK----VQWIYMIVDEGHRLKN-HECALAKTISGYQIQ 266 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~----~~w~~vIiDEaHriKN-~~sk~~kal~~l~~~ 266 (832)
.+.-.|.. ..-+.++.-...+.. -.|.++|||+||+|.. ....+-+.+..-+..
T Consensus 76 ~i~p~~~~---------------------I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~ 134 (290)
T PRK07276 76 VIEPQGQV---------------------IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSE 134 (290)
T ss_pred eecCCCCc---------------------CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCC
Confidence 33222211 112222222222221 2578999999999963 233455555554554
Q ss_pred eEEEeeccCCCCCHHHHHH
Q 003311 267 RRLLLTGTPIQNSLQELWS 285 (832)
Q Consensus 267 ~rllLTGTPlqN~l~EL~s 285 (832)
-.++|+..-...-+.-+.|
T Consensus 135 t~~iL~t~~~~~lLpTI~S 153 (290)
T PRK07276 135 IYIFLLTNDENKVLPTIKS 153 (290)
T ss_pred eEEEEEECChhhCchHHHH
Confidence 5555555433333444443
No 356
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=79.42 E-value=10 Score=42.06 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhccCC--Ce-EEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 119 QLEGLQWMLSLFNNNL--NG-ILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 119 Q~egl~wml~~~~~~~--~g-ILaDemGlGKTiqaiali~~l~~~ 160 (832)
|.+++..+.....++. ++ ++..+.|.||+..|.+++.+++..
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5556666666554443 34 778999999999999999988764
No 357
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=78.75 E-value=3.5 Score=41.62 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=24.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~ 173 (832)
++.-+|++|||...|..+..+... ..+++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~---~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIA---GKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhC---CCeEEEEEec
Confidence 466899999999887777655443 3467888884
No 358
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=78.67 E-value=14 Score=37.79 Aligned_cols=108 Identities=15% Similarity=0.061 Sum_probs=57.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCc
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRF 216 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~ 216 (832)
++...|.+|||..-|-.+... .....+++|..|.. ...+..-.+....|.. ..
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~---~~~g~~v~vfkp~i---------D~R~~~~~V~Sr~G~~---------------~~ 60 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRY---KEAGMKVLVFKPAI---------DTRYGVGKVSSRIGLS---------------SE 60 (201)
T ss_pred EEEccCcCcchHHHHHHHHHH---HHcCCeEEEEeccc---------ccccccceeeeccCCc---------------cc
Confidence 567899999998554444333 23345788888852 1112122233333322 11
Q ss_pred cEEecCHHHHHHhHHHHhh-cCceEEEEeCCcccCChhhHHHHHHHcccc--ceEEEeecc
Q 003311 217 NVLITHYDLIMRDRQYLKK-VQWIYMIVDEGHRLKNHECALAKTISGYQI--QRRLLLTGT 274 (832)
Q Consensus 217 dVvItTye~l~~d~~~L~~-~~w~~vIiDEaHriKN~~sk~~kal~~l~~--~~rllLTGT 274 (832)
-++|-+-.-+......... ...++|.|||||-+.. .+...+..+.. ..++++.|.
T Consensus 61 A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred ceecCChHHHHHHHHhcccCCCcCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 1333343444443333322 2268999999998865 33444444422 456666664
No 359
>PRK10867 signal recognition particle protein; Provisional
Probab=78.40 E-value=24 Score=40.92 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=25.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
+++...|+|||.++..++.++....+ ..+.||-|.
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~~G-~kV~lV~~D 138 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKKKK-KKVLLVAAD 138 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence 67899999999999988888776522 334444444
No 360
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=78.32 E-value=16 Score=38.46 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=28.0
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHH---------hcCCCCCEEEEeCC
Q 003311 135 NGILADEMGLGKTIQTIALIAYLLE---------NKGVTGPHVIVAPK 173 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~l~~---------~~~~~~p~LIV~P~ 173 (832)
-|+|+.+.|+|||..++.++..+.. .....+++|+++--
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~E 50 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAE 50 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECC
Confidence 3789999999999999888765542 11235677888753
No 361
>PRK11823 DNA repair protein RadA; Provisional
Probab=78.27 E-value=9.9 Score=44.24 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=40.2
Q ss_pred HHHHHHHH-hhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhh
Q 003311 121 EGLQWMLS-LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 186 (832)
Q Consensus 121 egl~wml~-~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 186 (832)
.++..++. -+..+.-.+|.-++|.|||..++.++..+... .+++|.|.-.....+......++
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ees~~qi~~ra~rl 130 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEESASQIKLRAERL 130 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccccHHHHHHHHHHc
Confidence 44665553 11122234789999999999998888766532 35778888766666665544443
No 362
>PRK10865 protein disaggregation chaperone; Provisional
Probab=78.11 E-value=8.8 Score=48.41 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=26.6
Q ss_pred HHHHHHHhh--ccCCCeEEEcCCCCcHHHHHHHHHHHHH
Q 003311 122 GLQWMLSLF--NNNLNGILADEMGLGKTIQTIALIAYLL 158 (832)
Q Consensus 122 gl~wml~~~--~~~~~gILaDemGlGKTiqaiali~~l~ 158 (832)
-+..++... ....+.||..+.|+|||..+-+++..+.
T Consensus 186 ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 186 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 466666532 3345779999999999998877776554
No 363
>PRK11054 helD DNA helicase IV; Provisional
Probab=77.96 E-value=5.3 Score=48.93 Aligned_cols=64 Identities=17% Similarity=0.114 Sum_probs=46.9
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCC-CCCEEEEeCCCchHHHHHH
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPKAVLPNWINE 182 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~-~~p~LIV~P~sll~qW~~E 182 (832)
..|.+-|.++|..- ..+.++....|+|||.+.++-++||+..... +..+|+++......+...+
T Consensus 195 ~~L~~~Q~~av~~~------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~e 259 (684)
T PRK11054 195 SPLNPSQARAVVNG------EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDE 259 (684)
T ss_pred CCCCHHHHHHHhCC------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHH
Confidence 57999999998521 2344666669999999999999999976533 3478999987665554433
No 364
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=77.96 E-value=4.3 Score=48.46 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=40.6
Q ss_pred CCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHH-HHHHHHHHh
Q 003311 111 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLEN 160 (832)
Q Consensus 111 ~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqai-ali~~l~~~ 160 (832)
...++++.|.+-.+-+.+-...+.-||+-.+||+|||+.-| +.+.||...
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 34689999998888888888889999999999999999876 445555543
No 365
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=77.91 E-value=9.8 Score=41.18 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=16.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALI 154 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali 154 (832)
--+.+|..+.|+|||..|--++
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA 73 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIA 73 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHH
Confidence 3467899999999997664333
No 366
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=77.67 E-value=16 Score=39.17 Aligned_cols=50 Identities=14% Similarity=0.027 Sum_probs=33.8
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHH
Q 003311 132 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 183 (832)
Q Consensus 132 ~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 183 (832)
.+.-.+|+..+|+|||..++.++..+.... ..+++++.--....+....+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEcccCHHHHHHHH
Confidence 344568999999999999988887765542 24677777644444444333
No 367
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=77.59 E-value=15 Score=43.14 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=19.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhc
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENK 161 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~ 161 (832)
.|.-.+|.|||.++..++.++....
T Consensus 260 ~LvGpnGvGKTTTiaKLA~~~~~~~ 284 (484)
T PRK06995 260 ALMGPTGVGKTTTTAKLAARCVMRH 284 (484)
T ss_pred EEECCCCccHHHHHHHHHHHHHHhc
Confidence 4678999999988877777665443
No 368
>PRK10263 DNA translocase FtsK; Provisional
Probab=77.47 E-value=8.9 Score=49.42 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=29.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhc-CCCCCEEEEeCCC
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPKA 174 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~-~~~~p~LIV~P~s 174 (832)
.+.++|..+|+|||...-++|..+.... ...-.+++|=|+.
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 4679999999999999888887766543 2223456666664
No 369
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=77.46 E-value=20 Score=44.29 Aligned_cols=137 Identities=16% Similarity=0.081 Sum_probs=67.2
Q ss_pred HhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCC--CCEEEEe-----CCCchHHHHHHHHhhCCCceEEEEcCChh
Q 003311 128 SLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVT--GPHVIVA-----PKAVLPNWINEFSTWAPSIAAVVYDGRPD 200 (832)
Q Consensus 128 ~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~--~p~LIV~-----P~sll~qW~~E~~k~~p~~~v~~~~g~~~ 200 (832)
.....+.-.|+--++|+|||.|...+|..-+...... .-..+.- |.+++....+|=..-. -.++.|.-.-.
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~--g~tvgy~vRf~ 465 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEV--GETCGYNVRFD 465 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhh--ccccccccccc
Confidence 3444566678899999999999877776544332211 1122222 3333333333321111 11111211000
Q ss_pred HHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccc----cceEEEeeccC
Q 003311 201 ERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ----IQRRLLLTGTP 275 (832)
Q Consensus 201 ~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~----~~~rllLTGTP 275 (832)
. .....---++.+|-+.+.+.... ......++|+||.|..--..--+...+..+. .-+.+++++|-
T Consensus 466 S--------a~prpyg~i~fctvgvllr~~e~-glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatI 535 (1282)
T KOG0921|consen 466 S--------ATPRPYGSIMFCTVGVLLRMMEN-GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATI 535 (1282)
T ss_pred c--------cccccccceeeeccchhhhhhhh-cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhccc
Confidence 0 00001123566676666553221 1234568999999976433333444445443 33458899985
No 370
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=77.32 E-value=23 Score=41.03 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=25.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
.+++...|.|||.++..++.++....+ ..+.||-|.
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g-~kV~lV~~D 137 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQG-KKVLLVACD 137 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCC-CeEEEEecc
Confidence 467999999999999888888753322 234444444
No 371
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=77.31 E-value=13 Score=40.83 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHH
Q 003311 137 ILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~ 159 (832)
++..+-|.|||..+.+++..+..
T Consensus 30 Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 30 IIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred EeECCCCCCHHHHHHHHHHHHcC
Confidence 78999999999999988877754
No 372
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=77.17 E-value=12 Score=40.63 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=20.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~ 160 (832)
.+++..+|+|||.++..++.++...
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3577899999999998888877654
No 373
>CHL00206 ycf2 Ycf2; Provisional
Probab=77.16 E-value=7 Score=52.17 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=29.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 179 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW 179 (832)
..|.+|..++|+|||+.|=|++... .-|++-|....++..|
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcc
Confidence 3455779999999999887777532 3477777666666655
No 374
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=76.92 E-value=16 Score=38.44 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=32.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 183 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 183 (832)
+.-.++..+.|+|||..++.++..+.... .+++.|+......+-.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHH
Confidence 44457899999999999888887765532 4667777654444433333
No 375
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=76.68 E-value=4 Score=41.20 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=32.2
Q ss_pred hccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHh
Q 003311 130 FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 185 (832)
Q Consensus 130 ~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 185 (832)
..++.|.+|..++|+|||..|.+++..+...+ .+++++. ...+..++..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~----~~~L~~~l~~ 92 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFIT----ASDLLDELKQ 92 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEE----HHHHHHHHHC
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEee----cCceeccccc
Confidence 34567778899999999999999998887742 3555553 3445555543
No 376
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=76.65 E-value=11 Score=46.67 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=21.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
..+.||.-+.|+|||..+-++...+..
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999988777654433
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=76.52 E-value=38 Score=36.68 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=22.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
++.-..|.|||.++..++.++... ..++++|.
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~ 107 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAA 107 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEe
Confidence 456899999999998888777543 23455554
No 378
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=76.37 E-value=6.9 Score=42.04 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 117 AYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 117 ~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
|+....+..++.....+.+.+|..++|+|||..|.++...+ ..|++.++
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 55566666666666678889999999999999987776532 34666654
No 379
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=76.06 E-value=32 Score=39.36 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=32.5
Q ss_pred CceEEEEeCCcccCCh---hhHHHHHHHcc-ccceEEEeec--cCCCCC--HHHHHHHH
Q 003311 237 QWIYMIVDEGHRLKNH---ECALAKTISGY-QIQRRLLLTG--TPIQNS--LQELWSLL 287 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~---~sk~~kal~~l-~~~~rllLTG--TPlqN~--l~EL~sLl 287 (832)
..++++||..|.+.+. .-.++..+..+ .....|+||+ +|-+-+ .++|.+=+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~ 233 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRL 233 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHH
Confidence 5688999999999765 34455555555 3445899999 664322 33454433
No 380
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=76.01 E-value=18 Score=46.45 Aligned_cols=130 Identities=17% Similarity=0.127 Sum_probs=72.0
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCce
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 191 (832)
+..|.+-|.+++..+.. .+.-++|....|+|||.+.-++.. +++.. ...++.++|..-.. ..+..-. ++.
T Consensus 379 ~~~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~l~~~~~-~~e~~--G~~V~g~ApTgkAA---~~L~e~~-Gi~ 448 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTMMKAARE-AWEAA--GYRVVGGALAGKAA---EGLEKEA-GIQ 448 (1102)
T ss_pred CCCCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHHHHHHHH-HHHHc--CCeEEEEcCcHHHH---HHHHHhh-CCC
Confidence 35799999999987642 234467888999999977655544 33332 24677888864433 2222211 111
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc-ccceEEE
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQRRLL 270 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l-~~~~rll 270 (832)
...++. +...+ .. ....+ ..-++||||||..+... .+...+... .+..+++
T Consensus 449 a~TIas-------~ll~~----~~-------------~~~~l--~~~~vlVIDEAsMv~~~--~m~~Ll~~~~~~garvV 500 (1102)
T PRK13826 449 SRTLSS-------WELRW----NQ-------------GRDQL--DNKTVFVLDEAGMVASR--QMALFVEAVTRAGAKLV 500 (1102)
T ss_pred eeeHHH-------HHhhh----cc-------------CccCC--CCCcEEEEECcccCCHH--HHHHHHHHHHhcCCEEE
Confidence 110000 00000 00 00001 12468999999988543 333444444 3678999
Q ss_pred eeccCCCCC
Q 003311 271 LTGTPIQNS 279 (832)
Q Consensus 271 LTGTPlqN~ 279 (832)
|.|-|-|-.
T Consensus 501 LVGD~~QL~ 509 (1102)
T PRK13826 501 LVGDPEQLQ 509 (1102)
T ss_pred EECCHHHcC
Confidence 999886543
No 381
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=75.64 E-value=9.7 Score=42.19 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=30.5
Q ss_pred CceEEEEeCCcccCChhhHHHHHHHccccceEEEeeccCCCCCHH
Q 003311 237 QWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQ 281 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlqN~l~ 281 (832)
+=.+||+||||+- .-.+.-..|.++-...++.+||.+.|-++.
T Consensus 243 ~dAfVIlDEaQNt--T~~QmKMfLTRiGf~skmvItGD~tQiDLp 285 (348)
T COG1702 243 NDAFVILDEAQNT--TVGQMKMFLTRIGFESKMVITGDITQIDLP 285 (348)
T ss_pred CCeEEEEeccccc--chhhhceeeeeecCCceEEEEcCcccccCC
Confidence 3458999999972 222333445777888899999999876654
No 382
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=75.60 E-value=35 Score=35.43 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=36.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhC
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA 187 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~ 187 (832)
.+++.+.|+|||..++.++...... ..++++|+......+-.+.+..+.
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLEEREERILGYAKSKG 67 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCHHHHHHHHHHcC
Confidence 3778899999999998887665543 357888888776777666666554
No 383
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=75.21 E-value=13 Score=42.38 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=19.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~ 156 (832)
..+.+|.-+.|+|||..|-+++..
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHH
Confidence 345688999999999988777654
No 384
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=75.10 E-value=5.9 Score=42.35 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=14.2
Q ss_pred cCCCeEEEcCCCCcHHHHH
Q 003311 132 NNLNGILADEMGLGKTIQT 150 (832)
Q Consensus 132 ~~~~gILaDemGlGKTiqa 150 (832)
.+..+++-.+.|+|||..+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4556677788999999544
No 385
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=75.07 E-value=8.1 Score=41.09 Aligned_cols=96 Identities=17% Similarity=0.274 Sum_probs=54.5
Q ss_pred EcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEE--eCCCchH---------------------HHHHHHHhhCCCceEEEE
Q 003311 139 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIV--APKAVLP---------------------NWINEFSTWAPSIAAVVY 195 (832)
Q Consensus 139 aDemGlGKTiqaiali~~l~~~~~~~~p~LIV--~P~sll~---------------------qW~~E~~k~~p~~~v~~~ 195 (832)
.--=|.|||..+.++...|...+ .++|+| +|.+.+. .|..-..+..+++.++.|
T Consensus 8 s~kGGvG~TTltAnLA~aL~~~G---~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~LPf 84 (243)
T PF06564_consen 8 SPKGGVGKTTLTANLAWALARLG---ESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDFLPF 84 (243)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCC---CcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEEEcC
Confidence 33459999999988887776643 255554 4544441 255555555667777777
Q ss_pred cCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHh-hcCceEEEEeCCc
Q 003311 196 DGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK-KVQWIYMIVDEGH 247 (832)
Q Consensus 196 ~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~-~~~w~~vIiDEaH 247 (832)
.......... |.-+.....-+......+. ...|++||+|=.+
T Consensus 85 G~l~~~~~~~----------~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~ 127 (243)
T PF06564_consen 85 GQLTEAEREA----------FEQLAQDPQWLARALAALKALGPYDWILIDTPP 127 (243)
T ss_pred CCCCHHHHHH----------HHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 6544322211 1112222334444455555 5578899999554
No 386
>PRK10689 transcription-repair coupling factor; Provisional
Probab=74.98 E-value=27 Score=45.49 Aligned_cols=95 Identities=12% Similarity=0.031 Sum_probs=63.7
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
.+||-......+-.....|.+|+|.+..+..+..+...+. ..++.+..++|..+..++..+++....+..+ |++
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~d--IVV 708 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID--ILI 708 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCC--EEE
Confidence 4556554333322233468899999999988766665554 3357788899999999999999988876555 444
Q ss_pred EeccccccccCcccCCeEEEe
Q 003311 498 LSTRAGGLGLNLQTADTVIIF 518 (832)
Q Consensus 498 lSt~agg~GLNL~~ad~VI~~ 518 (832)
.+.......+++.....||+=
T Consensus 709 gTp~lL~~~v~~~~L~lLVID 729 (1147)
T PRK10689 709 GTHKLLQSDVKWKDLGLLIVD 729 (1147)
T ss_pred ECHHHHhCCCCHhhCCEEEEe
Confidence 444445555666677776663
No 387
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=74.70 E-value=21 Score=39.56 Aligned_cols=123 Identities=21% Similarity=0.329 Sum_probs=64.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCch-HHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL-PNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGR 215 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 215 (832)
++.--.|.|||.+..-++.++...+ .++|+. -..+. .--.++++-|...+.+-++.+... .+
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~~g---~~Vlla-A~DTFRAaAiEQL~~w~er~gv~vI~~~~G-------------~D 205 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQQG---KSVLLA-AGDTFRAAAIEQLEVWGERLGVPVISGKEG-------------AD 205 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHHCC---CeEEEE-ecchHHHHHHHHHHHHHHHhCCeEEccCCC-------------CC
Confidence 4578899999977666666665432 234444 33333 234455666654333333332100 00
Q ss_pred ccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhh------HHHHHHHcc--ccceEEEee--ccCCCCCHHH
Q 003311 216 FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC------ALAKTISGY--QIQRRLLLT--GTPIQNSLQE 282 (832)
Q Consensus 216 ~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~s------k~~kal~~l--~~~~rllLT--GTPlqN~l~E 282 (832)
+ .-.-|+.+ ..-...++|+||||=|-|+-|... +..+.+... .++|.++|. ||-=||.+..
T Consensus 206 p--AaVafDAi----~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 206 P--AAVAFDAI----QAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred c--HHHHHHHH----HHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH
Confidence 0 00112222 334456799999999999977443 344444322 344555544 7776776553
No 388
>PRK08760 replicative DNA helicase; Provisional
Probab=74.35 E-value=38 Score=39.77 Aligned_cols=125 Identities=11% Similarity=0.098 Sum_probs=67.5
Q ss_pred HHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEE-EEcCC--h
Q 003311 123 LQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDGR--P 199 (832)
Q Consensus 123 l~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~-~~~g~--~ 199 (832)
|.-+..-+..+.=.|||..+|.|||.-++.++....... ..|++++..-....+|...+-.....+... +..|. .
T Consensus 219 LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~ 296 (476)
T PRK08760 219 FDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALED 296 (476)
T ss_pred HHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEeccCCHHHHHHHHHHhhCCCcHHHHhcCCCCH
Confidence 444443233333358999999999999998887665332 247889988777788877765443222111 11222 1
Q ss_pred hHHHHHHHHHHhhcCCccEEec-----CHHHHHHhHHHH-hhcCceEEEEeCCcccC
Q 003311 200 DERKAMREEFFSERGRFNVLIT-----HYDLIMRDRQYL-KKVQWIYMIVDEGHRLK 250 (832)
Q Consensus 200 ~~r~~~~~~~~~~~~~~dVvIt-----Tye~l~~d~~~L-~~~~w~~vIiDEaHriK 250 (832)
.+...+... ........+.|. |.+.+......+ .....++||||=.|.+.
T Consensus 297 ~e~~~~~~a-~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 297 EDWARVTGA-IKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHH-HHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcC
Confidence 111111111 111122334433 344444333333 33467899999777774
No 389
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=74.22 E-value=21 Score=37.36 Aligned_cols=48 Identities=8% Similarity=0.237 Sum_probs=34.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 186 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 186 (832)
.+++.++|+|||.-+..++...... ..++++|.=.....+..+.+..+
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCCHHHHHHHHHHC
Confidence 4778999999999998887665443 35777777666666666666554
No 390
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=74.16 E-value=23 Score=37.38 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=26.0
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCCCCEEEE--eCCCchHHHHHH
Q 003311 142 MGLGKTIQTIALIAYLLENKGVTGPHVIV--APKAVLPNWINE 182 (832)
Q Consensus 142 mGlGKTiqaiali~~l~~~~~~~~p~LIV--~P~sll~qW~~E 182 (832)
=|.|||..++.+..++...+ .+++|| -|...+..|...
T Consensus 11 GGvGKTT~a~nLA~~la~~G---~~VlliD~DpQ~s~~~w~~~ 50 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDG---KRVALFEADENRPLTRWKEN 50 (231)
T ss_pred CCccHHHHHHHHHHHHHhCC---CcEEEEeCCCCCCHHHHHHh
Confidence 48999999999888877642 244444 245667788653
No 391
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=73.86 E-value=12 Score=43.89 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhc-cC----CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCC-EEEEeCC
Q 003311 117 AYQLEGLQWMLSLFN-NN----LNGILADEMGLGKTIQTIALIAYLLENKGVTGP-HVIVAPK 173 (832)
Q Consensus 117 ~yQ~egl~wml~~~~-~~----~~gILaDemGlGKTiqaiali~~l~~~~~~~~p-~LIV~P~ 173 (832)
|+|...+..+..+.. .+ ..++|.-.=|-|||..+.+++.+.+--.+..++ ++++++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~ 63 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANT 63 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCC
Confidence 678877776664421 11 125777788999999887776665543333344 5566553
No 392
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.73 E-value=54 Score=39.86 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=26.0
Q ss_pred CceEEEEeCCcccCC-hhhHHHHHHHccccceEEEeeccC
Q 003311 237 QWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGTP 275 (832)
Q Consensus 237 ~w~~vIiDEaHriKN-~~sk~~kal~~l~~~~rllLTGTP 275 (832)
.+.+|||||+|++.. ....+.+.+......-+++|+.|-
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~ 160 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 578999999999953 223455555555555667777663
No 393
>CHL00095 clpC Clp protease ATP binding subunit
Probab=73.66 E-value=1.2e+02 Score=38.15 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=19.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHH
Q 003311 137 ILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~ 159 (832)
+++.++|+|||..|-++...++.
T Consensus 543 lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 543 LFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred EEECCCCCcHHHHHHHHHHHhcC
Confidence 78999999999999888877654
No 394
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.63 E-value=61 Score=36.95 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=27.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC-C---CchHHHHHH
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-K---AVLPNWINE 182 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P-~---sll~qW~~E 182 (832)
+++.+.|+|||.++..++.++...+ .++.+|+- . ..+.||..-
T Consensus 210 ~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~gAveQLk~y 256 (407)
T PRK12726 210 SLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSGAVEQFQGY 256 (407)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCccHHHHHHHH
Confidence 5788999999999888877665542 24444443 2 225566543
No 395
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.61 E-value=15 Score=41.28 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=53.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEcC-ChhHHHHHHHHHHhhcCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDG-RPDERKAMREEFFSERGR 215 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g-~~~~r~~~~~~~~~~~~~ 215 (832)
+++-=-|.|||.++.-++.|+...+ .++.||.+... -.--.++++.|+....+-+|.. +.....
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkkG--~K~~LvcaDTF-RagAfDQLkqnA~k~~iP~ygsyte~dpv------------ 169 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKKG--YKVALVCADTF-RAGAFDQLKQNATKARVPFYGSYTEADPV------------ 169 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhcC--CceeEEeeccc-ccchHHHHHHHhHhhCCeeEecccccchH------------
Confidence 4567789999988777766665432 44556655432 2222334444443333333321 111000
Q ss_pred ccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHH
Q 003311 216 FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALA 257 (832)
Q Consensus 216 ~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~ 257 (832)
.....-...+++-+|++||+|=+-|.+-..+.+.
T Consensus 170 --------~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfe 203 (483)
T KOG0780|consen 170 --------KIASEGVDRFKKENFDVIIVDTSGRHKQEASLFE 203 (483)
T ss_pred --------HHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHH
Confidence 1112234567778899999998888776555443
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=73.43 E-value=34 Score=39.47 Aligned_cols=54 Identities=22% Similarity=0.164 Sum_probs=32.6
Q ss_pred CceEEEEeCCcccCChhhHHHHHHHcc-----ccceEEEeeccCCCCCHHHHHHHHhccC
Q 003311 237 QWIYMIVDEGHRLKNHECALAKTISGY-----QIQRRLLLTGTPIQNSLQELWSLLNFLL 291 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~~sk~~kal~~l-----~~~~rllLTGTPlqN~l~EL~sLl~fL~ 291 (832)
.+++++||.+=+..+. ..+...+..+ .....|+|++|--.+.+.++..-+..+.
T Consensus 269 ~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~ 327 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHG 327 (420)
T ss_pred CCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCC
Confidence 4678999987544332 2233333333 2345688999977777777766655443
No 397
>PRK05748 replicative DNA helicase; Provisional
Probab=73.40 E-value=44 Score=38.88 Aligned_cols=127 Identities=14% Similarity=0.078 Sum_probs=66.3
Q ss_pred HHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEE-EEcCCh
Q 003311 121 EGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDGRP 199 (832)
Q Consensus 121 egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~-~~~g~~ 199 (832)
.++.-+..-+..+.-.+||..+|.|||.-++.++....... ..+++++..-..-.+....+-.....+... +..|.-
T Consensus 191 ~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~--g~~v~~fSlEms~~~l~~R~l~~~~~v~~~~i~~~~l 268 (448)
T PRK05748 191 TDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKT--DKNVAIFSLEMGAESLVMRMLCAEGNIDAQRLRTGQL 268 (448)
T ss_pred HHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhC--CCeEEEEeCCCCHHHHHHHHHHHhcCCCHHHhhcCCC
Confidence 34554443333333458999999999999998887764332 347888887666666555543222122111 112221
Q ss_pred --hHHHHHHHHHHhhcCCccEEe-----cCHHHHHHhHHHHh-hc-CceEEEEeCCcccC
Q 003311 200 --DERKAMREEFFSERGRFNVLI-----THYDLIMRDRQYLK-KV-QWIYMIVDEGHRLK 250 (832)
Q Consensus 200 --~~r~~~~~~~~~~~~~~dVvI-----tTye~l~~d~~~L~-~~-~w~~vIiDEaHriK 250 (832)
.+...+.... .......+.| .|.+.+......+. .. +.++||||=-|.+.
T Consensus 269 ~~~e~~~~~~a~-~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 269 TDDDWPKLTIAM-GSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred CHHHHHHHHHHH-HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 1111111111 1112333444 23444544433333 33 57899999888875
No 398
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=73.19 E-value=78 Score=33.01 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=30.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCC
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 174 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~s 174 (832)
+.-.+|+..+|+|||..++.++....... ..++|+++.-.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~E~ 52 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSLEM 52 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCCC
Confidence 33358899999999999998887776653 34788888643
No 399
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=73.07 E-value=20 Score=37.82 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=38.4
Q ss_pred HHHHHHHH-hhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHh
Q 003311 121 EGLQWMLS-LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 185 (832)
Q Consensus 121 egl~wml~-~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 185 (832)
.++.-++. -+..+...+++.+.|+|||..++-++...... ..++|+|+-.....+-.+.+..
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEeeCCHHHHHHHHHH
Confidence 34554443 12233345789999999999998887765543 3477888765555554444443
No 400
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.06 E-value=37 Score=38.19 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhccCC---CeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 119 QLEGLQWMLSLFNNNL---NGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 119 Q~egl~wml~~~~~~~---~gILaDemGlGKTiqaiali~~l~~ 159 (832)
|...+..+.....++. +-++..+.|+|||..+-+++..+..
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444444444443332 3468999999999888777665543
No 401
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=72.78 E-value=2.8 Score=46.70 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=29.9
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHh
Q 003311 132 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 185 (832)
Q Consensus 132 ~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 185 (832)
...|.+|-.+.|+|||+.|-++.... ..+++=|-=..+...|.-|-++
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~s~lt~KWfgE~eK 173 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA------GANFINVSVSNLTSKWFGEAQK 173 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc------CCCcceeeccccchhhHHHHHH
Confidence 45666889999999999987776322 2233333334455566544443
No 402
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=72.60 E-value=16 Score=40.70 Aligned_cols=125 Identities=20% Similarity=0.203 Sum_probs=68.1
Q ss_pred CCcHHHHHHHHHHHHHHhcC--------C----CCCEEEEeCCCchHHHHHH---HHhhCCCceEEEEcCChhHHHHHHH
Q 003311 143 GLGKTIQTIALIAYLLENKG--------V----TGPHVIVAPKAVLPNWINE---FSTWAPSIAAVVYDGRPDERKAMRE 207 (832)
Q Consensus 143 GlGKTiqaiali~~l~~~~~--------~----~~p~LIV~P~sll~qW~~E---~~k~~p~~~v~~~~g~~~~r~~~~~ 207 (832)
|+|||=.++.++.+|...+. . .+..++|.|.+....--+| +.+.+| ..|++....... ..
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~-~~V~V~~dR~~~----~~ 121 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP-VPVIVGPDRVAA----AR 121 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC-CcEEEeCcHHHH----HH
Confidence 99999999999999987631 1 1226777887744444344 556666 445444332221 12
Q ss_pred HHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCC----hhhHHHHHHHccccceEEEeeccCCC
Q 003311 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN----HECALAKTISGYQIQRRLLLTGTPIQ 277 (832)
Q Consensus 208 ~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN----~~sk~~kal~~l~~~~rllLTGTPlq 277 (832)
..... ..++|+|.--..=. ..| ..+++.|++|-.+-+.| +.-.+..-+..+.....+++|+.+..
T Consensus 122 ~~~~~-~~~dviilDDGfQh---~~L-~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~rAD~vi~~~~~~~ 190 (326)
T PF02606_consen 122 AALKE-FPADVIILDDGFQH---RRL-KRDLDIVLVDADRPFGNGFLLPAGPLREPLSALKRADAVIVTGCDAS 190 (326)
T ss_pred HHHHH-CCCCEEEEcCCccc---ccc-cCCcEEEEEeCCCCCcCCccCCCCcccCChhHhCcccEEEEcCCCcc
Confidence 22221 23677765422110 001 23577888887666655 23334444445555555666776643
No 403
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.57 E-value=30 Score=42.81 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=59.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC-CC---chHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhh
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KA---VLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSE 212 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P-~s---ll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~ 212 (832)
.|...+|.|||.++..++..+....+.. .+.+|+- .. .+.||..--+.. ++.+
T Consensus 189 ~lVGpnGvGKTTTiaKLA~~~~~~~G~k-kV~lit~Dt~RigA~eQL~~~a~~~--gvpv-------------------- 245 (767)
T PRK14723 189 ALVGPTGVGKTTTTAKLAARCVAREGAD-QLALLTTDSFRIGALEQLRIYGRIL--GVPV-------------------- 245 (767)
T ss_pred EEECCCCCcHHHHHHHHHhhHHHHcCCC-eEEEecCcccchHHHHHHHHHHHhC--CCCc--------------------
Confidence 4789999999988766666554333222 3333332 21 223332211111 1111
Q ss_pred cCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc-----ccceEEEeeccCCCCCHHHHHHHH
Q 003311 213 RGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-----QIQRRLLLTGTPIQNSLQELWSLL 287 (832)
Q Consensus 213 ~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l-----~~~~rllLTGTPlqN~l~EL~sLl 287 (832)
.++.+...+.+....+. ..++||||=+=+..+... +...+..+ .....|.|++|.-...+.++..-+
T Consensus 246 -----~~~~~~~~l~~al~~~~--~~D~VLIDTAGRs~~d~~-l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 246 -----HAVKDAADLRFALAALG--DKHLVLIDTVGMSQRDRN-VSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred -----cccCCHHHHHHHHHHhc--CCCEEEEeCCCCCccCHH-HHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 12223333333333333 457899998876643222 33333222 344568888886545555555444
Q ss_pred h
Q 003311 288 N 288 (832)
Q Consensus 288 ~ 288 (832)
+
T Consensus 318 ~ 318 (767)
T PRK14723 318 R 318 (767)
T ss_pred h
Confidence 3
No 404
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=72.21 E-value=28 Score=39.91 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=54.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCc
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRF 216 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~ 216 (832)
+++-=-|+|||.++.-++.||... ..++.||-|.. --+--.++++..+..+.+-+|......
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk~--~~kvllVaaD~-~RpAA~eQL~~La~q~~v~~f~~~~~~--------------- 165 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKKK--GKKVLLVAADT-YRPAAIEQLKQLAEQVGVPFFGSGTEK--------------- 165 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHHc--CCceEEEeccc-CChHHHHHHHHHHHHcCCceecCCCCC---------------
Confidence 457778999999998888888772 23344444432 223334444444433444444321110
Q ss_pred cEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCCh
Q 003311 217 NVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNH 252 (832)
Q Consensus 217 dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~ 252 (832)
+ ..++..+-...++...+++||||=|-|+.-.
T Consensus 166 ~----Pv~Iak~al~~ak~~~~DvvIvDTAGRl~id 197 (451)
T COG0541 166 D----PVEIAKAALEKAKEEGYDVVIVDTAGRLHID 197 (451)
T ss_pred C----HHHHHHHHHHHHHHcCCCEEEEeCCCccccc
Confidence 0 0123344456677778899999999888653
No 405
>CHL00176 ftsH cell division protein; Validated
Probab=71.85 E-value=31 Score=42.01 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=18.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~ 156 (832)
.+.+|..+.|+|||..+=+++..
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35688999999999988777543
No 406
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=71.75 E-value=42 Score=33.09 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=32.5
Q ss_pred cCceEEEEeCCcccCChhhHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhccC
Q 003311 236 VQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLL 291 (832)
Q Consensus 236 ~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~ 291 (832)
..+++||||=...+.+ ... .+..+.....+++..+|-..++.++..++.++.
T Consensus 66 ~~yD~VIiD~pp~~~~---~~~-~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~ 117 (169)
T cd02037 66 GELDYLVIDMPPGTGD---EHL-TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFK 117 (169)
T ss_pred CCCCEEEEeCCCCCcH---HHH-HHHhccCCCeEEEEECCchhhHHHHHHHHHHHH
Confidence 4799999997765421 111 111123345566666888888888888777764
No 407
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=71.73 E-value=9.4 Score=42.40 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=31.9
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
+.+.+.|..-+..++. .+.+.|++-+||+|||-..-+++..+..
T Consensus 127 g~~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 127 KIMTEAQASVIRSAID---SRLNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred CCCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4566777666555544 5677789999999999887777766543
No 408
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=71.53 E-value=18 Score=45.87 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=66.9
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
.+||-.+....+-.....|.+++|.+..+..+......+. ..++++..++|.++..++..+++.+..+..+ |++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d--IVI 559 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID--ILI 559 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce--EEE
Confidence 4666655443333333467899999999987776665554 3477889999999999999999999876554 444
Q ss_pred EeccccccccCcccCCeEEEeC
Q 003311 498 LSTRAGGLGLNLQTADTVIIFD 519 (832)
Q Consensus 498 lSt~agg~GLNL~~ad~VI~~D 519 (832)
.+.+.....+.+.....||+=+
T Consensus 560 GTp~ll~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLIIDE 581 (926)
T ss_pred chHHHhhCCCCcccCCEEEeec
Confidence 4444455567777777777643
No 409
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=71.41 E-value=16 Score=44.42 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=54.5
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhc---CCCCCEEEEeCC-CchHHHHHHHHh
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK---GVTGPHVIVAPK-AVLPNWINEFST 185 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~---~~~~p~LIV~P~-sll~qW~~E~~k 185 (832)
..|..-|+.+.+.++. ..=.|+..+.|+|||.+++-++..|+... ...-|+||||=. +.++|.-.-+..
T Consensus 377 ~ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eeecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 3677789999988886 45568999999999999999998888754 345699999985 678887666554
No 410
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=71.39 E-value=11 Score=44.32 Aligned_cols=137 Identities=16% Similarity=0.140 Sum_probs=74.3
Q ss_pred CCCchHHHHHHHHHHHHhhccCCC------eEEEcCCCCcHHHHHHHHHHHH--HHhcCCCCCEEEEeCCC-chHHHHHH
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLN------GILADEMGLGKTIQTIALIAYL--LENKGVTGPHVIVAPKA-VLPNWINE 182 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~------gILaDemGlGKTiqaiali~~l--~~~~~~~~p~LIV~P~s-ll~qW~~E 182 (832)
+..|-|||...+.-+.-+++.+.+ +++-.+=|=|||..+.+++.+. +.. .....++|++|.- ...+--.+
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHH
Confidence 358999999999877766665554 4778888999998776555443 333 3345678888852 12222122
Q ss_pred HHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCH------HHHHHhHHHHhhcCceEEEEeCCcccCChhhHH
Q 003311 183 FSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHY------DLIMRDRQYLKKVQWIYMIVDEGHRLKNHECAL 256 (832)
Q Consensus 183 ~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTy------e~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~ 256 (832)
+....-... ..+..... ....+.|+.- ..+..+...+...+..+.|+||-|..+++....
T Consensus 138 ar~mv~~~~--------~l~~~~~~------q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~~~ 203 (546)
T COG4626 138 ARDMVKRDD--------DLRDLCNV------QTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQEDMY 203 (546)
T ss_pred HHHHHHhCc--------chhhhhcc------ccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHHHH
Confidence 211110000 00000000 1111111111 112234455667789999999999999876333
Q ss_pred HHHHHcc
Q 003311 257 AKTISGY 263 (832)
Q Consensus 257 ~kal~~l 263 (832)
+.+...+
T Consensus 204 ~~~~~g~ 210 (546)
T COG4626 204 SEAKGGL 210 (546)
T ss_pred HHHHhhh
Confidence 3333333
No 411
>PHA02518 ParA-like protein; Provisional
Probab=71.23 E-value=20 Score=36.48 Aligned_cols=39 Identities=23% Similarity=0.448 Sum_probs=26.6
Q ss_pred cCCCCcHHHHHHHHHHHHHHhcCCCCCEEEE--eCCCchHHHHH
Q 003311 140 DEMGLGKTIQTIALIAYLLENKGVTGPHVIV--APKAVLPNWIN 181 (832)
Q Consensus 140 DemGlGKTiqaiali~~l~~~~~~~~p~LIV--~P~sll~qW~~ 181 (832)
.-=|.|||..++.+..++...+ .++|+| -|...+..|..
T Consensus 8 ~KGGvGKTT~a~~la~~la~~g---~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 8 QKGGAGKTTVATNLASWLHADG---HKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHhCC---CeEEEEeCCCCCChHHHHH
Confidence 3448999999998888776542 345554 35666777864
No 412
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=71.10 E-value=16 Score=41.17 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=18.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~ 156 (832)
..+.+|..+.|+|||..+-+++..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 345688999999999888777653
No 413
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=70.89 E-value=5.4 Score=48.88 Aligned_cols=54 Identities=20% Similarity=0.146 Sum_probs=41.2
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCCEEEEeCC
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPK 173 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~-~~~p~LIV~P~ 173 (832)
.|.|-|.++|.+ ...+.++....|+|||.+.+.-+++|+...+ .+..+|+|+.+
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT 56 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT 56 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEech
Confidence 477899999863 1345667777999999999999999997643 34568888875
No 414
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=70.04 E-value=54 Score=37.84 Aligned_cols=126 Identities=10% Similarity=0.068 Sum_probs=63.3
Q ss_pred HHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEE-EEcCC--
Q 003311 122 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDGR-- 198 (832)
Q Consensus 122 gl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~-~~~g~-- 198 (832)
++.-++.-+..+.=.+|+..+|.|||.-++.++....... ..+++++..-....+....+-....++... +..|.
T Consensus 184 ~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlEm~~~~i~~R~~~~~~~v~~~~~~~g~l~ 261 (434)
T TIGR00665 184 DLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLEMSAEQLAMRMLSSESRVDSQKLRTGKLS 261 (434)
T ss_pred hhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHhccCCCC
Confidence 3444443222233348899999999999998887765432 247888887655555444333222121110 11221
Q ss_pred hhHHHHHHHHHHhhcCCccEEe-----cCHHHHHHhHHH-HhhcCceEEEEeCCcccC
Q 003311 199 PDERKAMREEFFSERGRFNVLI-----THYDLIMRDRQY-LKKVQWIYMIVDEGHRLK 250 (832)
Q Consensus 199 ~~~r~~~~~~~~~~~~~~dVvI-----tTye~l~~d~~~-L~~~~w~~vIiDEaHriK 250 (832)
..+...+... ........+.| .|.+.+...... ....+.++||||=.|.+.
T Consensus 262 ~~~~~~~~~a-~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 262 DEDWEKLTSA-AGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHH-HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcC
Confidence 1111111111 11112223444 234444433332 334568999999877774
No 415
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=69.80 E-value=22 Score=40.12 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=30.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC-CCchHHHHHHHHhh
Q 003311 135 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KAVLPNWINEFSTW 186 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~ 186 (832)
+.++..+.|+|||+.|=|++.. ++.+.+=|. ..+...|.-|-++.
T Consensus 247 gvLm~GPPGTGKTlLAKAvATE-------c~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATE-------CGTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHh-------hcCeEEEechhhhhhhhccchHHH
Confidence 4477999999999998777653 334454444 45667786665543
No 416
>PF12846 AAA_10: AAA-like domain
Probab=69.54 E-value=9.8 Score=40.80 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=33.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE 182 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E 182 (832)
+.+.++...+|+|||..+..++..+...+ .+++|+=|..-...|.+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g---~~~~i~D~~g~~~~~~~~ 47 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG---PRVVIFDPKGDYSPLARA 47 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC---CCEEEEcCCchHHHHHHh
Confidence 35778999999999988887777776653 466777666444444433
No 417
>PRK09165 replicative DNA helicase; Provisional
Probab=69.54 E-value=80 Score=37.32 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=65.7
Q ss_pred HHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC------------CCCCEEEEeCCCchHHHHHHHHhhCCCc
Q 003311 123 LQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG------------VTGPHVIVAPKAVLPNWINEFSTWAPSI 190 (832)
Q Consensus 123 l~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~------------~~~p~LIV~P~sll~qW~~E~~k~~p~~ 190 (832)
+.-++.-+..+.=.|||..+|+|||.-++.++........ ...++|++..-....++...+-....++
T Consensus 207 LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v 286 (497)
T PRK09165 207 LDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEI 286 (497)
T ss_pred HhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCC
Confidence 4444432333333589999999999999888776654321 1357888887666666655543332222
Q ss_pred eEE-EEcCC--hhHHHHHHHHHHhhcCCccEEec-----CHHHHHHhHHHH-hhcCceEEEEeCCcccC
Q 003311 191 AAV-VYDGR--PDERKAMREEFFSERGRFNVLIT-----HYDLIMRDRQYL-KKVQWIYMIVDEGHRLK 250 (832)
Q Consensus 191 ~v~-~~~g~--~~~r~~~~~~~~~~~~~~dVvIt-----Tye~l~~d~~~L-~~~~w~~vIiDEaHriK 250 (832)
... +..|. ..+...+.... .......+.|. |.+.+......+ .....++||||=.|.|.
T Consensus 287 ~~~~i~~~~l~~~e~~~l~~a~-~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 287 SSSKIRRGKISEEDFEKLVDAS-QELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIR 354 (497)
T ss_pred CHHHHhcCCCCHHHHHHHHHHH-HHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcc
Confidence 111 11221 11222222111 11123334432 344444333333 34568899999887765
No 418
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=69.39 E-value=10 Score=44.65 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=25.3
Q ss_pred hcCceEEEEeCCcccCChhhHHHHHH-Hcc--ccceEEEeeccCC
Q 003311 235 KVQWIYMIVDEGHRLKNHECALAKTI-SGY--QIQRRLLLTGTPI 276 (832)
Q Consensus 235 ~~~w~~vIiDEaHriKN~~sk~~kal-~~l--~~~~rllLTGTPl 276 (832)
..++.+.||||+|.+.. ..+.++ +.+ ++.|.+++=||--
T Consensus 117 ~~ryKVyiIDEvHMLS~---~afNALLKTLEEPP~hV~FIlATTe 158 (515)
T COG2812 117 EGRYKVYIIDEVHMLSK---QAFNALLKTLEEPPSHVKFILATTE 158 (515)
T ss_pred cccceEEEEecHHhhhH---HHHHHHhcccccCccCeEEEEecCC
Confidence 34788999999999853 333333 444 6667766666643
No 419
>PRK08840 replicative DNA helicase; Provisional
Probab=69.28 E-value=93 Score=36.46 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=39.0
Q ss_pred HHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHH
Q 003311 123 LQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 183 (832)
Q Consensus 123 l~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 183 (832)
+.-+..-+..+.=.|||.-+|+|||.-++.++....... ..|+++...-....++...+
T Consensus 207 LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~--~~~v~~fSlEMs~~ql~~Rl 265 (464)
T PRK08840 207 LNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ--DKPVLIFSLEMPAEQLMMRM 265 (464)
T ss_pred HHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhC--CCeEEEEeccCCHHHHHHHH
Confidence 444443333333458999999999999987776654332 35888888866666665544
No 420
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=69.21 E-value=20 Score=44.47 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=17.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~ 156 (832)
.+.+|..+.|+|||..+-+++..
T Consensus 213 ~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred ceEEEECCCCCChHHHHHHHHHH
Confidence 45678999999999877665543
No 421
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=69.08 E-value=95 Score=31.24 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=43.1
Q ss_pred cCCeEEEEecchhHHHHHH----HHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc----c-ccccCc
Q 003311 439 SGHRVLLFSQMTRLMDILE----IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA----G-GLGLNL 509 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~----~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a----g-g~GLNL 509 (832)
.+.++||.+.....+..+. .+....++.+..++|+.+..+....+. ...+ |++.+... . ..-+++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--iiv~T~~~l~~~l~~~~~~~ 141 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPH--IVVATPGRLLDLLERGKLDL 141 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCC--EEEEChHHHHHHHHcCCCCh
Confidence 4678999999876655544 444445888899999988765544332 1223 44444321 1 112556
Q ss_pred ccCCeEEE
Q 003311 510 QTADTVII 517 (832)
Q Consensus 510 ~~ad~VI~ 517 (832)
...+.+|+
T Consensus 142 ~~l~~lIv 149 (203)
T cd00268 142 SKVKYLVL 149 (203)
T ss_pred hhCCEEEE
Confidence 66666654
No 422
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.06 E-value=50 Score=38.60 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=56.8
Q ss_pred CCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccccccc-------CcccC
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL-------NLQTA 512 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GL-------NL~~a 512 (832)
+..+||.+.....+.-....|...|+....+.|..+..++..++.....+. +.++++++....... .+...
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~--~~il~~TPe~l~~~~~~~~~l~~~~~i 128 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGK--IKLLYVTPEKCSASNRLLQTLEERKGI 128 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHcCchhHHHHHHhcCCc
Confidence 457899999988877667778888999999999999999988888886654 346666665443322 34456
Q ss_pred CeEEEeC
Q 003311 513 DTVIIFD 519 (832)
Q Consensus 513 d~VI~~D 519 (832)
+.||+=+
T Consensus 129 ~~iViDE 135 (470)
T TIGR00614 129 TLIAVDE 135 (470)
T ss_pred CEEEEeC
Confidence 6666644
No 423
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=69.02 E-value=65 Score=39.76 Aligned_cols=44 Identities=27% Similarity=0.332 Sum_probs=33.6
Q ss_pred HHhhcchHHHHHHHHHh-hhh---------cCCeEEEEecchhHHHHHHHHHHh
Q 003311 419 IIRASGKFELLDRLLPK-LRK---------SGHRVLLFSQMTRLMDILEIYLKL 462 (832)
Q Consensus 419 l~~~S~Kl~~L~~lL~~-l~~---------~g~kvLIFsq~~~~ldiL~~~L~~ 462 (832)
.....+|+..|.++|.+ ... ....|||-|..-.++-.+.++|..
T Consensus 347 ~lE~~pKw~~Ltdil~~e~~~~~~~~~~~~~~~~Vlv~c~dertC~ql~d~lt~ 400 (892)
T KOG0442|consen 347 ELEECPKWEVLTDILFKEIEHEKERADRSNDQGSVLVACSDERTCAQLRDYLTL 400 (892)
T ss_pred ccccCCCcHHHHHHHHhhhhhHHHHhhhcCCCCceEEEeccchhHHHHHHHHhc
Confidence 34568999999999933 221 234699999999999999988874
No 424
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=68.64 E-value=28 Score=46.44 Aligned_cols=61 Identities=18% Similarity=0.122 Sum_probs=40.1
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhc-CCCCCEEEEeCCCc
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPKAV 175 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~-~~~~p~LIV~P~sl 175 (832)
..|.+-|.+++..++.. .+.-.+|.-..|+|||.+.-+++..+.... .....++.++|..-
T Consensus 834 ~~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgk 895 (1623)
T PRK14712 834 EKLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHR 895 (1623)
T ss_pred cccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHH
Confidence 37999999999877752 134468888999999988655544332211 11235777888643
No 425
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=68.62 E-value=30 Score=39.52 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=19.0
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 132 NNLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 132 ~~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
.+..+++..+.|.|||..+-.+...+..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 3555677778999999776665544443
No 426
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=68.60 E-value=28 Score=47.05 Aligned_cols=62 Identities=18% Similarity=0.107 Sum_probs=41.0
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhc-CCCCCEEEEeCCCch
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPKAVL 176 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~-~~~~p~LIV~P~sll 176 (832)
..|-+-|.+++..++.. ...-.+|.-..|+|||.+.-+++..+.... .....++.++|..-.
T Consensus 966 ~~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrA 1028 (1747)
T PRK13709 966 EGLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRA 1028 (1747)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHH
Confidence 47899999999988751 123457888999999987655554432211 112356778887543
No 427
>PRK07004 replicative DNA helicase; Provisional
Probab=68.30 E-value=55 Score=38.26 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=64.8
Q ss_pred HHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEE-EEcCC--
Q 003311 122 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDGR-- 198 (832)
Q Consensus 122 gl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~-~~~g~-- 198 (832)
++.-+..-+..+.=.|||..+|+|||.-++.++.+..... ..|++++..-....++...+-.-...+... +..|.
T Consensus 202 ~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~--~~~v~~fSlEM~~~ql~~R~la~~~~v~~~~i~~g~l~ 279 (460)
T PRK07004 202 DLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEY--GLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLT 279 (460)
T ss_pred HhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHc--CCeEEEEeCCCCHHHHHHHHHHhhcCCCHHHHhcCCCC
Confidence 3444443233333358899999999999998887665332 347888887666666555442211111111 11222
Q ss_pred hhHHHHHHHHHHhhcCCccEEe-----cCHHHHHHhHHHHhh-c-CceEEEEeCCcccC
Q 003311 199 PDERKAMREEFFSERGRFNVLI-----THYDLIMRDRQYLKK-V-QWIYMIVDEGHRLK 250 (832)
Q Consensus 199 ~~~r~~~~~~~~~~~~~~dVvI-----tTye~l~~d~~~L~~-~-~w~~vIiDEaHriK 250 (832)
..+...+.... .......+.| .|...+......+.. . ..++||||=-|.+.
T Consensus 280 ~~e~~~~~~a~-~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 280 DEDWPKLTHAV-QKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHH-HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 22222222111 1112334544 234444443333433 2 36899999877775
No 428
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=68.23 E-value=1e+02 Score=35.38 Aligned_cols=59 Identities=8% Similarity=0.058 Sum_probs=38.0
Q ss_pred HHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHH
Q 003311 122 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE 182 (832)
Q Consensus 122 gl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E 182 (832)
.+.-++.-+..+.=.||+..+|+|||.-++.++..+.... ..|++++..-.-..+....
T Consensus 183 ~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~--g~~v~~fSlEm~~~~l~~R 241 (421)
T TIGR03600 183 KLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALRE--GKPVLFFSLEMSAEQLGER 241 (421)
T ss_pred hHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCCHHHHHHH
Confidence 3444443333333358999999999999998887664322 3578888865545554443
No 429
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=68.22 E-value=25 Score=39.98 Aligned_cols=119 Identities=12% Similarity=0.042 Sum_probs=60.0
Q ss_pred EEEcCCCCcHHHHHHHHHH-HHHHhcCCCCCEEEEeCC--CchH----HHHHHHHhhCCC------ce--EEEEcCChhH
Q 003311 137 ILADEMGLGKTIQTIALIA-YLLENKGVTGPHVIVAPK--AVLP----NWINEFSTWAPS------IA--AVVYDGRPDE 201 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~-~l~~~~~~~~p~LIV~P~--sll~----qW~~E~~k~~p~------~~--v~~~~g~~~~ 201 (832)
|+.-.-|+|||..++..+. .++.. .....+||+-|. ++-. +....+..+.-. .. .+.+.+
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~-~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~---- 79 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAIN-KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILN---- 79 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhc-CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecC----
Confidence 5667789999998765444 44443 123567778783 2333 333333333200 00 111110
Q ss_pred HHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhc-CceEEEEeCCcccCChhhHHHHHHHccc---cceEEEeeccCCC
Q 003311 202 RKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKV-QWIYMIVDEGHRLKNHECALAKTISGYQ---IQRRLLLTGTPIQ 277 (832)
Q Consensus 202 r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~-~w~~vIiDEaHriKN~~sk~~kal~~l~---~~~rllLTGTPlq 277 (832)
..-.+++-.- ..+...+... .++++++|||..+.. ....+++.+++ +..++++|.||-.
T Consensus 80 ------------~g~~i~f~g~---~d~~~~ik~~~~~~~~~idEa~~~~~--~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 80 ------------TGKKFIFKGL---NDKPNKLKSGAGIAIIWFEEASQLTF--EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred ------------CCeEEEeecc---cCChhHhhCcceeeeehhhhhhhcCH--HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 0111222222 1122334443 358999999998842 34444444443 2235999999954
No 430
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=67.98 E-value=13 Score=42.67 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=24.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 175 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl 175 (832)
+.+.+|..+.|+|||..+-+++..+ ..+++.+.+..+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l 215 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEF 215 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHH
Confidence 4556889999999999887665432 235555554333
No 431
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=67.79 E-value=21 Score=41.65 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=35.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 186 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 186 (832)
.+|+-++|.|||..++.++..+... .+++|.|.......|......++
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~EEs~~qi~~ra~rl 144 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGEESLQQIKMRAIRL 144 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECcCCHHHHHHHHHHc
Confidence 3789999999999998887766543 24788888876667766554443
No 432
>PF05729 NACHT: NACHT domain
Probab=67.58 E-value=19 Score=34.59 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=21.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKG 162 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~ 162 (832)
+|..+.|.|||..+-.++..+.....
T Consensus 4 ~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 4 WISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred EEECCCCCChHHHHHHHHHHHHhcCc
Confidence 67889999999998888877766543
No 433
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=67.36 E-value=16 Score=45.06 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=17.7
Q ss_pred CCeEEEcCCCCcHHHHHHHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIA 155 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~ 155 (832)
.+.||.-+.|+|||..+-++..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999988766654
No 434
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=66.92 E-value=7.8 Score=45.62 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHHHHhhc--------cCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHh
Q 003311 114 ELRAYQLEGLQWMLSLFN--------NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 185 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~--------~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 185 (832)
..++...+++.|.+.... ...+.+|+.+.|+|||+.|-++...+ ..+++-|-...++..|.-|.++
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHH
Confidence 466677788888876543 23355889999999999987776522 2356655555888888777765
Q ss_pred h
Q 003311 186 W 186 (832)
Q Consensus 186 ~ 186 (832)
-
T Consensus 323 ~ 323 (494)
T COG0464 323 N 323 (494)
T ss_pred H
Confidence 3
No 435
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=66.80 E-value=30 Score=37.04 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=26.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
.+++-+.|+|||.-++.++...... ..++++|.-
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~ 72 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTV 72 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEe
Confidence 4789999999999998887765543 347777774
No 436
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=66.45 E-value=30 Score=38.46 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=31.4
Q ss_pred cCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe-CCCchHH-HHHH----HHhhCCCceEEEEcCC
Q 003311 140 DEMGLGKTIQTIALIAYLLENKGVTGPHVIVA-PKAVLPN-WINE----FSTWAPSIAAVVYDGR 198 (832)
Q Consensus 140 DemGlGKTiqaiali~~l~~~~~~~~p~LIV~-P~sll~q-W~~E----~~k~~p~~~v~~~~g~ 198 (832)
--=|.|||-+++|+..++.+.+ .+..||-+ |.+-+.+ ...+ ..+-.|++.+.-+.-.
T Consensus 9 GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~ 71 (322)
T COG0003 9 GKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPE 71 (322)
T ss_pred cCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHH
Confidence 3458999999999888887765 33444423 4333322 1111 2233355666655543
No 437
>PRK08506 replicative DNA helicase; Provisional
Probab=66.38 E-value=68 Score=37.65 Aligned_cols=126 Identities=15% Similarity=0.126 Sum_probs=65.2
Q ss_pred HHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEE-EEcCC-
Q 003311 121 EGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDGR- 198 (832)
Q Consensus 121 egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~-~~~g~- 198 (832)
..+.-+..-+..+.=.|||..+|.|||.-++.++...... ..+++++..-....+....+-....++... +..|.
T Consensus 180 ~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~---g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l 256 (472)
T PRK08506 180 VELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQ---DKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDL 256 (472)
T ss_pred HHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhc---CCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 3454444323333335899999999999999888776532 347888888666666555443221111110 01121
Q ss_pred -hhHHHHHHHHHHhhcCCccEEe-----cCHHHHHHhHHHHhh-c-CceEEEEeCCcccC
Q 003311 199 -PDERKAMREEFFSERGRFNVLI-----THYDLIMRDRQYLKK-V-QWIYMIVDEGHRLK 250 (832)
Q Consensus 199 -~~~r~~~~~~~~~~~~~~dVvI-----tTye~l~~d~~~L~~-~-~w~~vIiDEaHriK 250 (832)
..+...+.... .......++| +|...+......+.. . ..++||||=-|.+.
T Consensus 257 ~~~e~~~~~~a~-~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 257 DDDEWERLSDAC-DELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred CHHHHHHHHHHH-HHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 12222221111 1112223444 244445444444433 2 47899999887775
No 438
>PRK09087 hypothetical protein; Validated
Probab=66.03 E-value=35 Score=35.78 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=26.3
Q ss_pred eEEEEeCCcccCChhhHHHHHHHcc-ccceEEEeecc
Q 003311 239 IYMIVDEGHRLKNHECALAKTISGY-QIQRRLLLTGT 274 (832)
Q Consensus 239 ~~vIiDEaHriKN~~sk~~kal~~l-~~~~rllLTGT 274 (832)
++++||+.|.+......++..+..+ .....+++|++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECC
Confidence 4799999999865556677777544 44677888887
No 439
>PRK12608 transcription termination factor Rho; Provisional
Probab=65.73 E-value=23 Score=40.05 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 120 LEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 120 ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
..++..++- ...+.+++|..+.|+|||..+..++..+...
T Consensus 121 ~RvID~l~P-iGkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 121 MRVVDLVAP-IGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred Hhhhhheee-cCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 345554443 2456678899999999998887777766554
No 440
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=65.60 E-value=13 Score=42.53 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=33.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST 185 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 185 (832)
-+|.-+.|.|||+.+.|++.... ..+.=|.|.+|...|.-|-++
T Consensus 189 lLLfGPpgtGKtmL~~aiAsE~~------atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 189 LLLFGPPGTGKTMLAKAIATESG------ATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred hheecCCCCchHHHHHHHHhhhc------ceEeeccHHHhhhhccChHHH
Confidence 36899999999999988876542 256778888888887655543
No 441
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=65.33 E-value=33 Score=39.24 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=18.2
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHH
Q 003311 132 NNLNGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 132 ~~~~gILaDemGlGKTiqaiali~~l 157 (832)
.+..+.+..+.|+|||..+-.+...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh
Confidence 35557888899999997665544433
No 442
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=64.73 E-value=24 Score=36.01 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=16.0
Q ss_pred CCeEEEcCCCCcHHHHHHHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIA 155 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~ 155 (832)
...+|..+-|+|||...-.++.
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~ 42 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFIN 42 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCcCCHHHHHHHHHH
Confidence 4567889999999965444443
No 443
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=64.55 E-value=18 Score=42.72 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=18.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~ 156 (832)
..+.+|.-++|+|||..+-+++..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 345688999999999988776543
No 444
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=64.34 E-value=38 Score=38.61 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=61.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCc
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRF 216 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~ 216 (832)
+++-+.|.||+..-+-+++.+... +++|.|+----+.||+-...+..- ...
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA~~----~~vLYVsGEES~~QiklRA~RL~~-------------------------~~~ 147 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLAKR----GKVLYVSGEESLQQIKLRADRLGL-------------------------PTN 147 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHHhc----CcEEEEeCCcCHHHHHHHHHHhCC-------------------------Ccc
Confidence 678999999997766666665543 389999998889999888877641 112
Q ss_pred cEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCC
Q 003311 217 NVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN 251 (832)
Q Consensus 217 dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN 251 (832)
++.+.....+..-...+...+++++|||=.+.+-+
T Consensus 148 ~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred ceEEehhcCHHHHHHHHHhcCCCEEEEeccceeec
Confidence 34444444444445667778899999998888744
No 445
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=64.30 E-value=4.2 Score=41.10 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=44.3
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCC-chHHHHHHHHhhC-CCceEEEEcCChhHHHHHHHHHHhhcCC
Q 003311 138 LADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA-VLPNWINEFSTWA-PSIAAVVYDGRPDERKAMREEFFSERGR 215 (832)
Q Consensus 138 LaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~-p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 215 (832)
|-.+=|-|||-..-.+++.+..... ..++|.+|.. -+.. +..+. ..+...-|............... ...
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~~~----lf~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~ 73 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENVQT----LFEFAEKGLKALGYKEEKKKRIGQIIKLR--FNK 73 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HH----HHHCC----------------------------C
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHHHH----HHHHHHhhccccccccccccccccccccc--ccc
Confidence 4455799999665444444443322 4788888953 2222 22222 12222222221110000000000 023
Q ss_pred ccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEeeccC
Q 003311 216 FNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTP 275 (832)
Q Consensus 216 ~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTP 275 (832)
..|-...++.+... ....+++|||||=-|- -..+. .-+...+++++|.|-
T Consensus 74 ~~i~f~~Pd~l~~~-----~~~~DlliVDEAAaIp--~p~L~---~ll~~~~~vv~stTi 123 (177)
T PF05127_consen 74 QRIEFVAPDELLAE-----KPQADLLIVDEAAAIP--LPLLK---QLLRRFPRVVFSTTI 123 (177)
T ss_dssp CC--B--HHHHCCT---------SCEEECTGGGS---HHHHH---HHHCCSSEEEEEEEB
T ss_pred ceEEEECCHHHHhC-----cCCCCEEEEechhcCC--HHHHH---HHHhhCCEEEEEeec
Confidence 34444444443221 1246899999996552 11222 223456788888884
No 446
>PRK05595 replicative DNA helicase; Provisional
Probab=63.85 E-value=57 Score=37.90 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=39.9
Q ss_pred HHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHH
Q 003311 121 EGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFS 184 (832)
Q Consensus 121 egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~ 184 (832)
..+.-+..-+..+.=.|+|..+|.|||.-++.++..+.... ..+++++..-....++...+-
T Consensus 189 ~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~--g~~vl~fSlEms~~~l~~R~~ 250 (444)
T PRK05595 189 RELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALRE--GKSVAIFSLEMSKEQLAYKLL 250 (444)
T ss_pred HHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHH
Confidence 34554443233333348899999999999998887654322 347888887666666655543
No 447
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=63.78 E-value=74 Score=31.88 Aligned_cols=125 Identities=15% Similarity=0.147 Sum_probs=64.3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchH--HHHHHHHhhC-CCceEEEEcCChhHHHHHHHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP--NWINEFSTWA-PSIAAVVYDGRPDERKAMREEFF 210 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~--qW~~E~~k~~-p~~~v~~~~g~~~~r~~~~~~~~ 210 (832)
..-.+.-.+|.|||..+.-++..|.+.+ ...-=|+||.---. -|-=.+-... ..-..+.+.|.. +..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~--~~r------ 75 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFS--RPR------ 75 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCC--Ccc------
Confidence 3456788999999988877777776653 11222444421100 0000000000 111222333331 111
Q ss_pred hhcCCccEEecCHHHHHHhHHHHhh--cCceEEEEeCCcccCChhhHHHHHHH-ccccceEEEee
Q 003311 211 SERGRFNVLITHYDLIMRDRQYLKK--VQWIYMIVDEGHRLKNHECALAKTIS-GYQIQRRLLLT 272 (832)
Q Consensus 211 ~~~~~~dVvItTye~l~~d~~~L~~--~~w~~vIiDEaHriKN~~sk~~kal~-~l~~~~rllLT 272 (832)
.++|-|.+-..+-+.. ..+.+ -.-|+|||||.--|-...-++..++. -+++...++.|
T Consensus 76 --vGkY~V~v~~le~i~~--~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliat 136 (179)
T COG1618 76 --VGKYGVNVEGLEEIAI--PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIAT 136 (179)
T ss_pred --cceEEeeHHHHHHHhH--HHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 1667666665553322 12222 13689999999998777777888884 44555554433
No 448
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=63.58 E-value=1.4e+02 Score=30.29 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHHHhhcCceEEEEeCCcccCCh----hhHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhcc
Q 003311 230 RQYLKKVQWIYMIVDEGHRLKNH----ECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFL 290 (832)
Q Consensus 230 ~~~L~~~~w~~vIiDEaHriKN~----~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL 290 (832)
...+..-.|++||+||.-..-+. ...+...+..-+..--++|||- |-+++|..+.+++
T Consensus 108 ~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR---~~p~~Lie~AD~V 169 (178)
T PRK07414 108 QAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGP---EMPESLLAIADQI 169 (178)
T ss_pred HHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECC---CCCHHHHHhCCee
Confidence 34455678999999998665432 2345555555566668999996 5666776665554
No 449
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=63.44 E-value=44 Score=40.43 Aligned_cols=93 Identities=20% Similarity=0.230 Sum_probs=71.0
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecch----hHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMT----RLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~----~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
.|||--+..--+-.....|.++.+....- +..+-+..+|...|+.+..++|+++.++|.+++.+-.++..+ ++
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---iv 369 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---IV 369 (677)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---EE
Confidence 46665433332333346688888888763 566778888888899999999999999999999999999887 67
Q ss_pred Eeccc-cccccCcccCCeEEE
Q 003311 498 LSTRA-GGLGLNLQTADTVII 517 (832)
Q Consensus 498 lSt~a-gg~GLNL~~ad~VI~ 517 (832)
|-|.| .-..++....-.||+
T Consensus 370 VGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 370 VGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EEcchhhhcceeecceeEEEE
Confidence 77777 566777777777776
No 450
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=62.28 E-value=35 Score=32.91 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC-CCeE--EEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 426 FELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-DFKF--LRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 426 l~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-g~~~--~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
...+.+++.+....|+|++|+|.....++.|-+.|=.. .-.| .-+.|.-.. ...+ ++|++..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~------------~~~P---V~i~~~~ 79 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPPA------------ARQP---VLITWDQ 79 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SST------------T--S---EEEE-TT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCCC------------CCCe---EEEecCc
Confidence 57888999999999999999999999999999988322 1111 222332211 1124 4555433
Q ss_pred cccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHH
Q 003311 503 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 565 (832)
Q Consensus 503 gg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K 565 (832)
-. -....++.+|++++.+ |... .+. -+|+.+|..+.- .+-..|...|
T Consensus 80 ~~--~~~~~~~vLinL~~~~-p~~~-~~f-----------~rvieiv~~~~~-~~~~aR~r~r 126 (137)
T PF04364_consen 80 EA--NPNNHADVLINLSGEV-PPFF-SRF-----------ERVIEIVDQDDE-AKQAARERYR 126 (137)
T ss_dssp S------S--SEEEE--SS---GGG-GG------------SEEEEEE-SSHH-HHHHHHHHHH
T ss_pred cc--CCCCCCCEEEECCCCC-cchh-hcc-----------cEEEEEecCCHH-HHHHHHHHHH
Confidence 21 2334589999998887 3222 111 256677765543 4444444443
No 451
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=61.87 E-value=4.9 Score=47.97 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=49.4
Q ss_pred CeEEEEecchhHHHHHHHHHHhCCC-------eEEEEcCCCCHHHHHHHHHhhcCCC-CCceEEEEec--cccccccCcc
Q 003311 441 HRVLLFSQMTRLMDILEIYLKLNDF-------KFLRLDGSTKTEERGTLLKQFNAPD-SPYFMFLLST--RAGGLGLNLQ 510 (832)
Q Consensus 441 ~kvLIFsq~~~~ldiL~~~L~~~g~-------~~~rldG~ts~~eR~~~i~~Fn~~~-~~~~v~LlSt--~agg~GLNL~ 510 (832)
.-||+|..+-..+..+...+...|+ +-+.+....+ -.++++.|...- .+.-.+|++. .-.++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 4588888888888888888875553 1111221122 345667775321 1111344443 4467999999
Q ss_pred c--CCeEEEeCCCCC
Q 003311 511 T--ADTVIIFDSDWN 523 (832)
Q Consensus 511 ~--ad~VI~~D~~wN 523 (832)
+ +..||+...|+-
T Consensus 707 D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccEEEEeecCCC
Confidence 7 889999988873
No 452
>PHA00012 I assembly protein
Probab=61.57 E-value=17 Score=40.36 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=22.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 175 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl 175 (832)
++..-+|.|||+.|++-|...+..+ . .|++-..+
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G----r-~VaTNidL 38 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG----C-IVATNLNL 38 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC----C-EEEeCCcc
Confidence 4556789999999998666655543 2 45555444
No 453
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=61.07 E-value=15 Score=45.60 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=27.0
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 179 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW 179 (832)
.+.+|.-+.|+|||..+-+++..+ ..+++.|-+..++..|
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKW 527 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhcc
Confidence 345789999999999887766533 2366766665554443
No 454
>PRK10037 cell division protein; Provisional
Probab=60.95 E-value=35 Score=36.11 Aligned_cols=29 Identities=24% Similarity=0.126 Sum_probs=21.0
Q ss_pred EcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEE
Q 003311 139 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 170 (832)
Q Consensus 139 aDemGlGKTiqaiali~~l~~~~~~~~p~LIV 170 (832)
.---|.|||..++.+...|...+ .++|+|
T Consensus 8 n~KGGvGKTT~a~nLA~~La~~G---~rVLlI 36 (250)
T PRK10037 8 GVRGGVGTTSITAALAWSLQMLG---ENVLVI 36 (250)
T ss_pred cCCCCccHHHHHHHHHHHHHhcC---CcEEEE
Confidence 34459999999998888877643 256665
No 455
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=60.91 E-value=39 Score=37.38 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=27.5
Q ss_pred hccCCCeEEEcCCCCcHHHHHHHHHHHHHHh-------cCCCCCEEEEe
Q 003311 130 FNNNLNGILADEMGLGKTIQTIALIAYLLEN-------KGVTGPHVIVA 171 (832)
Q Consensus 130 ~~~~~~gILaDemGlGKTiqaiali~~l~~~-------~~~~~p~LIV~ 171 (832)
+..+...||+.+-|+|||...|-+...+..- ...+|.+|+|.
T Consensus 86 fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvs 134 (402)
T COG3598 86 FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVS 134 (402)
T ss_pred hhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEE
Confidence 4456777999999999998877655444321 12345666664
No 456
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=60.66 E-value=12 Score=40.02 Aligned_cols=121 Identities=18% Similarity=0.154 Sum_probs=58.7
Q ss_pred HHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEcCChhHHHH
Q 003311 125 WMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKA 204 (832)
Q Consensus 125 wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~ 204 (832)
+|......+.+.+++.++|+|||-+.-+++.++-.. ...+++|=... |+ ..+....+.+....
T Consensus 119 ~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~---~~~iv~iEd~~-------E~--~l~~~~~~~~~~~~----- 181 (270)
T PF00437_consen 119 FLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE---DERIVTIEDPP-------EL--RLPGPNQIQIQTRR----- 181 (270)
T ss_dssp HHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT---TSEEEEEESSS--------S----SCSSEEEEEEET-----
T ss_pred HHhhccccceEEEEECCCccccchHHHHHhhhcccc---ccceEEecccc-------ce--eecccceEEEEeec-----
Confidence 344444556777889999999998887776554333 23444443211 01 11221111111000
Q ss_pred HHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEeeccCCCCCHHHHH
Q 003311 205 MREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELW 284 (832)
Q Consensus 205 ~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~ 284 (832)
. -.+|..+.+ ..-..++++|||+|.- +.. ...++....+.+...+|-+ ..++..+..
T Consensus 182 ---------~-----~~~~~~~l~---~~LR~~pD~iiigEiR---~~e--~~~~~~a~~tGh~~~~tT~-Ha~s~~~~i 238 (270)
T PF00437_consen 182 ---------D-----EISYEDLLK---SALRQDPDVIIIGEIR---DPE--AAEAIQAANTGHLGSLTTL-HANSAEDAI 238 (270)
T ss_dssp ---------T-----TBSHHHHHH---HHTTS--SEEEESCE----SCH--HHHHHHHHHTT-EEEEEEE-E-SSHHHHH
T ss_pred ---------C-----cccHHHHHH---HHhcCCCCcccccccC---CHh--HHHHHHhhccCCceeeeee-ecCCHHHHH
Confidence 0 013443333 2344578999999964 333 3334666667777755544 344555443
Q ss_pred H
Q 003311 285 S 285 (832)
Q Consensus 285 s 285 (832)
.
T Consensus 239 ~ 239 (270)
T PF00437_consen 239 E 239 (270)
T ss_dssp H
T ss_pred H
Confidence 3
No 457
>PRK04328 hypothetical protein; Provisional
Probab=60.52 E-value=46 Score=35.38 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=30.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHH
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFS 184 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~ 184 (832)
.+++.+.|+|||+.++.++..-... ..+.++|.=-....+-.+.+.
T Consensus 26 ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis~ee~~~~i~~~~~ 71 (249)
T PRK04328 26 VLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVALEEHPVQVRRNMR 71 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEEeeCCHHHHHHHHH
Confidence 4679999999999998887765443 236677765433333333333
No 458
>PRK08006 replicative DNA helicase; Provisional
Probab=60.41 E-value=1.7e+02 Score=34.45 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=64.7
Q ss_pred HHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEE-EEcCC--h
Q 003311 123 LQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDGR--P 199 (832)
Q Consensus 123 l~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~-~~~g~--~ 199 (832)
|..+..-+..+.=.|||.-+|+|||.-++.++....... ..|+++...-....++...+-.-...+... +..|. .
T Consensus 214 LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~--g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~l~~ 291 (471)
T PRK08006 214 LNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQ--DKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDD 291 (471)
T ss_pred HHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCCCCH
Confidence 444444333333458999999999999988887665332 357888887666666655443322221111 11221 2
Q ss_pred hHHHHHHHHHHhhc-CCccEEec-----CHHHHHHhHHHH-hhc-CceEEEEeCCcccC
Q 003311 200 DERKAMREEFFSER-GRFNVLIT-----HYDLIMRDRQYL-KKV-QWIYMIVDEGHRLK 250 (832)
Q Consensus 200 ~~r~~~~~~~~~~~-~~~dVvIt-----Tye~l~~d~~~L-~~~-~w~~vIiDEaHriK 250 (832)
.+...+.... ... .+..+.|. |...+......+ .+. ..++||||=-|.+.
T Consensus 292 ~e~~~~~~a~-~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 292 EDWARISGTM-GILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHH-HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 2222222111 111 22334432 344443333333 333 57899999877775
No 459
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=60.38 E-value=51 Score=35.05 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=60.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHH-HHHHHHhhCCCceEE-EEcCC--hhHHHHHHHHHHh
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN-WINEFSTWAPSIAAV-VYDGR--PDERKAMREEFFS 211 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~q-W~~E~~k~~p~~~v~-~~~g~--~~~r~~~~~~~~~ 211 (832)
.+||..+|.|||.-++.++..+....+ .|+|+++.-..-.+ +.+-+.... .+..- +..|. ..+...+... ..
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~SlEm~~~~l~~R~la~~s-~v~~~~i~~g~l~~~e~~~~~~~-~~ 97 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSLEMSEEELAARLLARLS-GVPYNKIRSGDLSDEEFERLQAA-AE 97 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEESSS-HHHHHHHHHHHHH-TSTHHHHHCCGCHHHHHHHHHHH-HH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHhh-cchhhhhhccccCHHHHHHHHHH-HH
Confidence 589999999999999999888877532 58999988644444 333333322 11100 11121 2222222211 11
Q ss_pred hcCCccEEe-----cCHHHHHHhHHHHhh--cCceEEEEeCCcccCC
Q 003311 212 ERGRFNVLI-----THYDLIMRDRQYLKK--VQWIYMIVDEGHRLKN 251 (832)
Q Consensus 212 ~~~~~dVvI-----tTye~l~~d~~~L~~--~~w~~vIiDEaHriKN 251 (832)
......++| +|.+.+......+.. .+.++||||=.|.+..
T Consensus 98 ~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 98 KLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred HHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 112222333 234455444444433 5778999998888865
No 460
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=60.34 E-value=68 Score=38.65 Aligned_cols=126 Identities=16% Similarity=0.168 Sum_probs=72.5
Q ss_pred cCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhh
Q 003311 359 CDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRK 438 (832)
Q Consensus 359 ~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~ 438 (832)
..+++.|...+..+..-.........+..+.+..++.-+.++..+|.+.. -..
T Consensus 30 ~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~---------------------------~~~ 82 (572)
T PRK04537 30 TRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALAD---------------------------RKP 82 (572)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccc---------------------------ccc
Confidence 46789999999888765444444444444444433333333332221100 011
Q ss_pred cCCeEEEEecchhHHHHHHHHH----HhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec-c----cc--cccc
Q 003311 439 SGHRVLLFSQMTRLMDILEIYL----KLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST-R----AG--GLGL 507 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L----~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt-~----ag--g~GL 507 (832)
.+.++||.+.....+..+.+.+ ...++.+..++|+.+.......+.. ..+ | ||+| . .. ...+
T Consensus 83 ~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~----~~d--I-iV~TP~rL~~~l~~~~~~ 155 (572)
T PRK04537 83 EDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ----GVD--V-IIATPGRLIDYVKQHKVV 155 (572)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC----CCC--E-EEECHHHHHHHHHhcccc
Confidence 2458999999988776555544 3457889999999988766555542 223 4 4555 1 11 1236
Q ss_pred CcccCCeEEEe
Q 003311 508 NLQTADTVIIF 518 (832)
Q Consensus 508 NL~~ad~VI~~ 518 (832)
+|..+++||+=
T Consensus 156 ~l~~v~~lViD 166 (572)
T PRK04537 156 SLHACEICVLD 166 (572)
T ss_pred chhheeeeEec
Confidence 67777777663
No 461
>PRK08939 primosomal protein DnaI; Reviewed
Probab=60.30 E-value=22 Score=39.16 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=23.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
+.|-+|...+|+|||..+.|++..+...
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~ 183 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKK 183 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3445788999999999999999888754
No 462
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=59.94 E-value=28 Score=38.68 Aligned_cols=96 Identities=18% Similarity=0.247 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHH
Q 003311 150 TIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMR 228 (832)
Q Consensus 150 aiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~ 228 (832)
.+.+..++-.+.....|+||.+|. ..+.+...-+++-+|...+...+.....|......+.. +..+++|||-= +-+
T Consensus 291 ~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~--G~~~lLiTTTI-LER 367 (441)
T COG4098 291 PLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRD--GKITLLITTTI-LER 367 (441)
T ss_pred CHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHc--CceEEEEEeeh-hhc
Confidence 456777777776677899999996 67777888887888888877777777777776665554 78999998842 211
Q ss_pred hHHHHhhcCceEEEEeCCcccCC
Q 003311 229 DRQYLKKVQWIYMIVDEGHRLKN 251 (832)
Q Consensus 229 d~~~L~~~~w~~vIiDEaHriKN 251 (832)
. +.--+.++.|++--|++-.
T Consensus 368 G---VTfp~vdV~Vlgaeh~vfT 387 (441)
T COG4098 368 G---VTFPNVDVFVLGAEHRVFT 387 (441)
T ss_pred c---cccccceEEEecCCccccc
Confidence 1 1112467889987787754
No 463
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=59.58 E-value=69 Score=41.95 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=39.7
Q ss_pred cCCeEEEEecchhHHHHHHHHH----HhCCCeEE---EEcCCCCHHHHHHHHHhhcCCCCC
Q 003311 439 SGHRVLLFSQMTRLMDILEIYL----KLNDFKFL---RLDGSTKTEERGTLLKQFNAPDSP 492 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L----~~~g~~~~---rldG~ts~~eR~~~i~~Fn~~~~~ 492 (832)
.|.++||.+..+..+..+...+ ...|+... .++|+++..++...++.+..++.+
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~d 180 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFD 180 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCC
Confidence 4789999999987766655544 33455443 479999999998888888875544
No 464
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=59.56 E-value=1.3e+02 Score=33.09 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=62.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHh-hCCCceEEEEcCChhHHHHHHHHHHhhcCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST-WAPSIAAVVYDGRPDERKAMREEFFSERGR 215 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k-~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 215 (832)
++..+-|.||+..|.+++.+++.... + . .. .-+.. ..|++..+.-.|...
T Consensus 23 Lf~G~~G~Gk~~lA~~~A~~llC~~~---~------~-~c----~~~~~~~HPD~~~i~p~~~~~--------------- 73 (290)
T PRK05917 23 ILHGQDLSNLSARAYELASLILKETS---P------E-AA----YKISQKIHPDIHEFSPQGKGR--------------- 73 (290)
T ss_pred eeECCCCCcHHHHHHHHHHHHhCCCC---c------c-HH----HHHhcCCCCCEEEEecCCCCC---------------
Confidence 57899999999999999998876421 1 0 11 11222 236655443232210
Q ss_pred ccEEecCHHHHHHhHHHHh----hcCceEEEEeCCcccCC-hhhHHHHHHHccccceEEEeeccCCCCCHHHH
Q 003311 216 FNVLITHYDLIMRDRQYLK----KVQWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283 (832)
Q Consensus 216 ~dVvItTye~l~~d~~~L~----~~~w~~vIiDEaHriKN-~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL 283 (832)
..+-+.+..-...+. .-.+.++|||+||++.. ....+-+.+..-+..-.++|.++-...-+.-+
T Consensus 74 ----~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 74 ----LHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred ----cCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHH
Confidence 011122211111111 13578999999999953 44566677766666666666665433333333
No 465
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=59.48 E-value=25 Score=36.47 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=37.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhC
Q 003311 135 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA 187 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~ 187 (832)
-.+++-+.|+|||+.++.++..-.... ..++++|+-.....++.+.+..+.
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESSS-HHHHHHHHHTTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEecCCHHHHHHHHHHcC
Confidence 357899999999999998887665541 136788887777788888877664
No 466
>PRK14701 reverse gyrase; Provisional
Probab=59.27 E-value=72 Score=43.20 Aligned_cols=60 Identities=12% Similarity=0.238 Sum_probs=45.5
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh------CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKL------NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 500 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~------~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt 500 (832)
.|.++||.+..+..+..+.+.|.. .++.++.++|+++..++.++++.+..++.+ |++.++
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~d--ILV~TP 186 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFD--ILVTTA 186 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCC--EEEECC
Confidence 577999999998877766666654 256778899999999999989888876555 444443
No 467
>PRK05973 replicative DNA helicase; Provisional
Probab=59.18 E-value=24 Score=37.41 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=36.1
Q ss_pred hccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhh
Q 003311 130 FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 186 (832)
Q Consensus 130 ~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 186 (832)
+..+.-.+|+..+|+|||+.++-++...... ..+++++.--..-.+-.+.+..+
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEeCCHHHHHHHHHHc
Confidence 3344455889999999999999888766543 34778887654444444444433
No 468
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=59.16 E-value=33 Score=40.63 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=35.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhC
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA 187 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~ 187 (832)
.++..++|+|||..++.++...... ..++++|.-.....+-.+.+..+.
T Consensus 276 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~~~yis~e~~~~~i~~~~~~~g 324 (509)
T PRK09302 276 ILVSGATGTGKTLLASKFAEAACRR---GERCLLFAFEESRAQLIRNARSWG 324 (509)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEecCCHHHHHHHHHHcC
Confidence 3678999999999999888766543 347788877655666555555543
No 469
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=58.99 E-value=87 Score=36.04 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=75.5
Q ss_pred cCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhh
Q 003311 359 CDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRK 438 (832)
Q Consensus 359 ~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~ 438 (832)
..+++.|.+.+..+.......+....|.++.+..++.-|..+.+.|. ...
T Consensus 22 ~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~------------------------------~~~ 71 (434)
T PRK11192 22 TRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR------------------------------RKS 71 (434)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc------------------------------cCC
Confidence 35788999998888754433333334444443333222222211110 011
Q ss_pred cCCeEEEEecchhHHHHHHH----HHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc-----ccccCc
Q 003311 439 SGHRVLLFSQMTRLMDILEI----YLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-----GLGLNL 509 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~----~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-----g~GLNL 509 (832)
.+.++||.+.....+..+.+ +....++.+..++|+.....+...+. . ..+ |++.++... ...+++
T Consensus 72 ~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~---~-~~~--IlV~Tp~rl~~~~~~~~~~~ 145 (434)
T PRK11192 72 GPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS---E-NQD--IVVATPGRLLQYIKEENFDC 145 (434)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc---C-CCC--EEEEChHHHHHHHHcCCcCc
Confidence 23589999998876655544 44556889999999998876655543 2 222 444433111 234567
Q ss_pred ccCCeEEEeCCC----CChhhHHHHhh
Q 003311 510 QTADTVIIFDSD----WNPQMDQQAED 532 (832)
Q Consensus 510 ~~ad~VI~~D~~----wNp~~~~QAig 532 (832)
...+.||+=+.+ |.....++.+.
T Consensus 146 ~~v~~lViDEah~~l~~~~~~~~~~i~ 172 (434)
T PRK11192 146 RAVETLILDEADRMLDMGFAQDIETIA 172 (434)
T ss_pred ccCCEEEEECHHHHhCCCcHHHHHHHH
Confidence 777777764332 44444444443
No 470
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=58.64 E-value=1e+02 Score=28.72 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=29.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCC
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAP 188 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p 188 (832)
.++.-..|.|||..+..+..++... ..++++|- ... ..+.+++..+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~---g~~V~~id-~D~-~~~~~~~~~~~~ 49 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK---GKPVLAID-ADP-DDLPERLSVEVG 49 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEE-CCc-hhhHHHHhhccC
Confidence 3567789999999998887777553 22444433 222 555555555543
No 471
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=58.46 E-value=16 Score=39.44 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=31.4
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHH
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL 158 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~ 158 (832)
-+.+.|.+.+.+++. ......+++-++|+|||-..-+++.++.
T Consensus 63 g~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 63 GLKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 467888888877765 1122347899999999988877776653
No 472
>PHA02542 41 41 helicase; Provisional
Probab=58.44 E-value=59 Score=38.21 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=38.1
Q ss_pred HHHHHHH-HhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHH
Q 003311 121 EGLQWML-SLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEF 183 (832)
Q Consensus 121 egl~wml-~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 183 (832)
..+.-|. .-+..+-=.|+|..+|.|||..++.++...... ..++|++.----..++...+
T Consensus 177 ~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~---g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 177 EILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQ---GYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred HHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhc---CCcEEEEeccCCHHHHHHHH
Confidence 3455554 223223335899999999999999888776532 34778876544445554443
No 473
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=58.26 E-value=41 Score=39.61 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=42.9
Q ss_pred HHHHHHHHHh-hccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhh
Q 003311 120 LEGLQWMLSL-FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 186 (832)
Q Consensus 120 ~egl~wml~~-~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 186 (832)
..++.-|+.- +..+.-.++.-++|+|||..++-++...... ..++|+|.--....|-....+.+
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---ge~~~y~s~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN---KERAILFAYEESRAQLLRNAYSW 313 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCHHHHHHHHHHc
Confidence 3455555431 1222234889999999999998888776554 24778888777777777666655
No 474
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=57.71 E-value=2.7e+02 Score=33.58 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=47.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
+..+||.+.....+.-....|...|+.+..++|+.+..++..++.....+..+ +++++...
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~--il~~tpe~ 113 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELK--LLYVAPER 113 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCC--EEEEChhH
Confidence 34678889998887766677888899999999999999999888888766544 55555443
No 475
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=57.65 E-value=19 Score=39.60 Aligned_cols=43 Identities=26% Similarity=0.206 Sum_probs=28.7
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
.+-+-|..-+. .....+.+.+++-+||+|||..+-+++..+..
T Consensus 116 ~~~~~~~~~L~---~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 116 IMTAAQRDVLR---EAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCHHHHHHHH---HHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 34444444443 44446677899999999999888777765543
No 476
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=56.99 E-value=23 Score=40.05 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=44.9
Q ss_pred CchHHHHHHHHHHHHhhc--cCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchH
Q 003311 114 ELRAYQLEGLQWMLSLFN--NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP 177 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~--~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~ 177 (832)
+|-+-|..++.+++.... .+.+-+|.-.-|+|||...=+++.++... ..++++++|..+..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~---~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR---GKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc---cceEEEecchHHHH
Confidence 466789999998877653 34455788999999999877777666442 35789999976543
No 477
>PHA00350 putative assembly protein
Probab=56.91 E-value=23 Score=40.51 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=13.5
Q ss_pred EEEcCCCCcHHHHHHHH
Q 003311 137 ILADEMGLGKTIQTIAL 153 (832)
Q Consensus 137 ILaDemGlGKTiqaial 153 (832)
++---.|+|||+-|+..
T Consensus 5 l~tG~pGSGKT~~aV~~ 21 (399)
T PHA00350 5 AIVGRPGSYKSYEAVVY 21 (399)
T ss_pred EEecCCCCchhHHHHHH
Confidence 45567899999999874
No 478
>PRK10818 cell division inhibitor MinD; Provisional
Probab=56.87 E-value=51 Score=35.16 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=29.7
Q ss_pred HhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhcc
Q 003311 233 LKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFL 290 (832)
Q Consensus 233 L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL 290 (832)
+....+++||||=...+. ... +..+.....+++.-+|-...+..+..++..+
T Consensus 109 l~~~~yd~viiD~p~~~~---~~~---~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i 160 (270)
T PRK10818 109 LKAMDFEFIVCDSPAGIE---TGA---LMALYFADEAIITTNPEVSSVRDSDRILGIL 160 (270)
T ss_pred HhhcCCCEEEEeCCCCcc---HHH---HHHHHhCCeEEEEcCCCchHHHhHHHHHHHH
Confidence 443469999999655442 111 2223344455555777766666666655544
No 479
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=56.62 E-value=24 Score=39.38 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=25.1
Q ss_pred HHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHH
Q 003311 124 QWMLSLFNNNLNGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 124 ~wml~~~~~~~~gILaDemGlGKTiqaiali~~l 157 (832)
.|+......+.+.+++-++|+|||-..-+++.++
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 4444445678888999999999997776666544
No 480
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=56.58 E-value=17 Score=41.08 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=28.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 181 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~ 181 (832)
++.+|.-+.|+|||+++=+++..+ .-++++|....++..|.-
T Consensus 149 lgllL~GPPGcGKTllAraiA~el------g~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKM------GIEPIVMSAGELESENAG 190 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHc------CCCeEEEEHHHhhcCcCC
Confidence 345678999999999997777654 224566665566655533
No 481
>PRK05636 replicative DNA helicase; Provisional
Probab=56.56 E-value=70 Score=37.92 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=31.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHH
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE 182 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E 182 (832)
.||+..+|.|||.-++.++....... ..++++...-....++...
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~--g~~v~~fSlEMs~~ql~~R 312 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKH--NKASVIFSLEMSKSEIVMR 312 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEeeCCHHHHHHH
Confidence 48899999999999988876654332 3478888775555555443
No 482
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=56.48 E-value=85 Score=43.45 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=43.4
Q ss_pred CCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCch
Q 003311 110 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 176 (832)
Q Consensus 110 l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll 176 (832)
+.+..|-+-|.+++.-++.. ...-.||--..|+|||.+.-+++.. .+.. ...+++++|..-.
T Consensus 425 ~~~~~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~l~~l~~~-~~~~--G~~V~~lAPTgrA 486 (1960)
T TIGR02760 425 LSEFALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEIAQLLLHL-ASEQ--GYEIQIITAGSLS 486 (1960)
T ss_pred cccCCCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHHHHHHHHH-HHhc--CCeEEEEeCCHHH
Confidence 44568999999999877751 2234578888999999776555544 3332 3478899997644
No 483
>PRK06620 hypothetical protein; Validated
Probab=56.42 E-value=59 Score=33.81 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=49.7
Q ss_pred EEEeC-CCchHHHHHHHHh-hC--CCceEEEEcCChh-HHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEE
Q 003311 168 VIVAP-KAVLPNWINEFST-WA--PSIAAVVYDGRPD-ERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMI 242 (832)
Q Consensus 168 LIV~P-~sll~qW~~E~~k-~~--p~~~v~~~~g~~~-~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vI 242 (832)
.||.| .....++..++.. |. |....++++|.+. .+..+...+.. .....+++...... ..+. ..++++
T Consensus 18 Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~---~~~~~~~~~~~~~~--~~~~--~~d~ll 90 (214)
T PRK06620 18 FIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQN---LSNAYIIKDIFFNE--EILE--KYNAFI 90 (214)
T ss_pred hEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHh---ccCCEEcchhhhch--hHHh--cCCEEE
Confidence 67777 3445555555554 42 2113344444443 33333333322 22334444332211 1222 347899
Q ss_pred EeCCcccCChhhHHHHHHHcc-ccceEEEeeccC
Q 003311 243 VDEGHRLKNHECALAKTISGY-QIQRRLLLTGTP 275 (832)
Q Consensus 243 iDEaHriKN~~sk~~kal~~l-~~~~rllLTGTP 275 (832)
|||+|++. ...+...+..+ .....+++|||-
T Consensus 91 iDdi~~~~--~~~lf~l~N~~~e~g~~ilits~~ 122 (214)
T PRK06620 91 IEDIENWQ--EPALLHIFNIINEKQKYLLLTSSD 122 (214)
T ss_pred Eeccccch--HHHHHHHHHHHHhcCCEEEEEcCC
Confidence 99999762 23444444333 455689999984
No 484
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=55.77 E-value=1.7e+02 Score=29.52 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=32.1
Q ss_pred HHHHhhcCceEEEEeCCcccCC----hhhHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhcc
Q 003311 230 RQYLKKVQWIYMIVDEGHRLKN----HECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFL 290 (832)
Q Consensus 230 ~~~L~~~~w~~vIiDEaHriKN----~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL 290 (832)
...+..-.|++||+||.-..-+ ....+...+..-+..--++|||- +-..+|..+.+++
T Consensus 89 ~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR---~~~~~l~e~ADlV 150 (172)
T PF02572_consen 89 KEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGR---NAPEELIEAADLV 150 (172)
T ss_dssp HHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-S---S--HHHHHH-SEE
T ss_pred HHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECC---CCCHHHHHhCCee
Confidence 3445566899999999755433 23345555555566777999996 4456666665554
No 485
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=55.38 E-value=65 Score=44.54 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=69.8
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHH---HHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY---LLENKGVTGPHVIVAPKAVLPNWINEFSTWAPS 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~---l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~ 189 (832)
..|.+-|.+++..++.. .+.-.++--..|+|||.+..+++.. +++.. ...++.++|..-. ..++..- +
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~--g~~v~glApT~~A---a~~L~~~--g 1088 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIST--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESE--QLQVIGLAPTHEA---VGELKSA--G 1088 (1960)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhc--CCeEEEEeChHHH---HHHHHhc--C
Confidence 57999999999887651 1234467788999999887544333 33322 2356777886433 2333321 1
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc-ccceE
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQRR 268 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l-~~~~r 268 (832)
+. . ..+ ..++. .+ ...... -....-+++|||||-.+.+.. +...+... .+..+
T Consensus 1089 ~~--------a--~Ti-~s~l~---~~-------~~~~~~---~~~~~~~v~ivDEasMv~~~~--~~~l~~~~~~~~ak 1142 (1960)
T TIGR02760 1089 VQ--------A--QTL-DSFLT---DI-------SLYRNS---GGDFRNTLFILDESSMVSNFQ--LTHATELVQKSGSR 1142 (1960)
T ss_pred Cc--------h--HhH-HHHhc---Cc-------cccccc---CCCCcccEEEEEccccccHHH--HHHHHHhccCCCCE
Confidence 10 0 000 11110 00 000000 002245799999999886532 23333322 45578
Q ss_pred EEeeccCCC
Q 003311 269 LLLTGTPIQ 277 (832)
Q Consensus 269 llLTGTPlq 277 (832)
++|.|-|-|
T Consensus 1143 ~vlvGD~~Q 1151 (1960)
T TIGR02760 1143 AVSLGDIAQ 1151 (1960)
T ss_pred EEEeCChhh
Confidence 999997754
No 486
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=55.10 E-value=20 Score=36.58 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=25.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
..|.+++-.+|+|||....+++..+.........-|+|+.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD 77 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIID 77 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEc
Confidence 4478999999999999998888888774333334455544
No 487
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=54.57 E-value=1.1e+02 Score=38.93 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=44.4
Q ss_pred hhcCCeEEEEecchhH----HHHHHHHHHhCC-CeEEE-EcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc
Q 003311 437 RKSGHRVLLFSQMTRL----MDILEIYLKLND-FKFLR-LDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504 (832)
Q Consensus 437 ~~~g~kvLIFsq~~~~----ldiL~~~L~~~g-~~~~r-ldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 504 (832)
...|+|++|....+.. .+.|..+....| +.... +||.++..++++++++|.+++-+ |++.++.-+.
T Consensus 122 a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfd--IlitTs~FL~ 193 (1187)
T COG1110 122 AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFD--ILITTSQFLS 193 (1187)
T ss_pred HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCcc--EEEEeHHHHH
Confidence 3457888877776644 455555554444 33333 89999999999999999998866 4444444443
No 488
>PHA00673 acetyltransferase domain containing protein
Probab=53.79 E-value=22 Score=35.10 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=37.2
Q ss_pred ceEEEEeCCcccCChhhHHHHHHHcc---ccceEEEeeccCCCCCHH
Q 003311 238 WIYMIVDEGHRLKNHECALAKTISGY---QIQRRLLLTGTPIQNSLQ 281 (832)
Q Consensus 238 w~~vIiDEaHriKN~~sk~~kal~~l---~~~~rllLTGTPlqN~l~ 281 (832)
.+.|.|++.||-+..+..+...+... ...++|.+||||-.|.++
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 56799999999999999888887544 567899999999988764
No 489
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=53.69 E-value=1.3e+02 Score=30.58 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=26.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 174 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~s 174 (832)
.+.-+.|+|||..++.++...... ..+++.|.-..
T Consensus 16 ~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e~ 50 (209)
T TIGR02237 16 QIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTEG 50 (209)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC
Confidence 678999999999998887766543 34667776654
No 490
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=53.68 E-value=1e+02 Score=35.24 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=27.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEE---eCCCchHHH
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIV---APKAVLPNW 179 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV---~P~sll~qW 179 (832)
|...-=|.|||.+++.+...|...+ .++|+| -|...+..|
T Consensus 111 i~n~KGGVGKTT~a~nLA~~LA~~G---~rVLlID~~DpQ~nlt~~ 153 (388)
T PRK13705 111 VAAHKGGVYKTSVSVHLAQDLALKG---LRVLLVEGNDPQGTASMY 153 (388)
T ss_pred EECCCCCchHHHHHHHHHHHHHhcC---CCeEEEcCCCCCCchhhh
Confidence 4456689999999998888776542 356666 365545554
No 491
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.13 E-value=27 Score=40.73 Aligned_cols=113 Identities=16% Similarity=0.317 Sum_probs=79.5
Q ss_pred hHHH-HHHHHHhhhhcC-CeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 425 KFEL-LDRLLPKLRKSG-HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 425 Kl~~-L~~lL~~l~~~g-~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
++.. ...|++.+...+ .-+|||-..---.=.+..+++..++.|..++--++...-.++-+-|-.+... ++|.+-|+
T Consensus 535 RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~--vlLyTER~ 612 (698)
T KOG2340|consen 535 RFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKS--VLLYTERA 612 (698)
T ss_pred HHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCce--EEEEehhh
Confidence 4443 456778877554 4567776543333446778888889999888888877777788888887654 67777776
Q ss_pred c-ccccCcccCCeEEEeCCCCChhhHH---HHhhhccccCC
Q 003311 503 G-GLGLNLQTADTVIIFDSDWNPQMDQ---QAEDRAHRIGQ 539 (832)
Q Consensus 503 g-g~GLNL~~ad~VI~~D~~wNp~~~~---QAigRahRiGQ 539 (832)
- =.--.+.++..||+|.||-||+-|- -.++|+.-.|.
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn 653 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGN 653 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCC
Confidence 2 2345677889999999999998765 44556655553
No 492
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=52.93 E-value=1.6e+02 Score=32.33 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=18.6
Q ss_pred EEecCHHHHHHhHHHHhhcCceEEEEeCCcccCCh
Q 003311 218 VLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNH 252 (832)
Q Consensus 218 VvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~ 252 (832)
+.+.+...-. ....+....+++|||||+-.+...
T Consensus 79 i~~~~~~~~~-~~~~~~G~~~~~i~iDE~~~~~~~ 112 (384)
T PF03237_consen 79 IQFRGADSPD-SGDNIRGFEYDLIIIDEAAKVPDD 112 (384)
T ss_dssp EEEES------SHHHHHTS--SEEEEESGGGSTTH
T ss_pred EEEecccccc-ccccccccccceeeeeecccCchH
Confidence 5555544221 335566788999999998777543
No 493
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=52.83 E-value=38 Score=37.47 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=16.8
Q ss_pred CCCcHHHHHHHHHHHHHHh
Q 003311 142 MGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 142 mGlGKTiqaiali~~l~~~ 160 (832)
=|+|||=.++.++.++...
T Consensus 39 GGTGKTP~v~~La~~l~~~ 57 (311)
T TIGR00682 39 GGTGKTPVVVWLAELLKDR 57 (311)
T ss_pred CCcChHHHHHHHHHHHHHC
Confidence 4999999999999988775
No 494
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=52.77 E-value=75 Score=28.01 Aligned_cols=46 Identities=20% Similarity=0.129 Sum_probs=36.0
Q ss_pred CCeEEEEec------chhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHh
Q 003311 440 GHRVLLFSQ------MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQ 485 (832)
Q Consensus 440 g~kvLIFsq------~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~ 485 (832)
.++|+||+. +......+.++|...|+.|..++=....+.+..+.+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~ 58 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEY 58 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHH
Confidence 579999987 5567889999999999999998866566555555554
No 495
>CHL00195 ycf46 Ycf46; Provisional
Probab=52.74 E-value=26 Score=41.22 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=24.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~ 173 (832)
..+.+|..+.|+|||..|=+++..+ .-|++.+-+.
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~ 293 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVG 293 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhH
Confidence 3445789999999999886666543 2366666543
No 496
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=52.35 E-value=25 Score=33.81 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=19.7
Q ss_pred hccCCCeEEEcCCCCcHHHHHHHHHHHH
Q 003311 130 FNNNLNGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 130 ~~~~~~gILaDemGlGKTiqaiali~~l 157 (832)
...+.-.+|.-++|+|||.-+=+++..+
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3334445689999999998776666554
No 497
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=52.28 E-value=49 Score=41.80 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHH
Q 003311 137 ILADEMGLGKTIQTIALIAYLL 158 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~ 158 (832)
+++.++|+|||..|-++...++
T Consensus 600 lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 600 LLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred EEECCCCCCHHHHHHHHHHHHh
Confidence 7899999999999988877765
No 498
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=52.00 E-value=1.3e+02 Score=34.82 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=47.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHh-----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec-ccc-----ccccC
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKL-----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST-RAG-----GLGLN 508 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~-----~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt-~ag-----g~GLN 508 (832)
+.++||.+..+..+..+.+.+.. .++.+..++|+++.......+. . ..+ | +++| ... ...++
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~---~-~~~--I-vV~Tp~rl~~~l~~~~~~ 144 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE---H-GAH--I-IVGTPGRILDHLRKGTLD 144 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc---C-CCC--E-EEEChHHHHHHHHcCCcc
Confidence 34789999999888777766542 3788999999998765544443 2 223 4 4444 211 23567
Q ss_pred cccCCeEEEeCC
Q 003311 509 LQTADTVIIFDS 520 (832)
Q Consensus 509 L~~ad~VI~~D~ 520 (832)
+...+.||+=+.
T Consensus 145 l~~l~~lViDEa 156 (460)
T PRK11776 145 LDALNTLVLDEA 156 (460)
T ss_pred HHHCCEEEEECH
Confidence 788888876444
No 499
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.99 E-value=1.5e+02 Score=36.10 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=15.9
Q ss_pred eEEEcCCCCcHHHHHHHHHH
Q 003311 136 GILADEMGLGKTIQTIALIA 155 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~ 155 (832)
.+|..+.|+|||..+-.++.
T Consensus 113 llL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999987755553
No 500
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=51.66 E-value=76 Score=31.69 Aligned_cols=104 Identities=16% Similarity=0.251 Sum_probs=55.0
Q ss_pred HHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHH-HHHHhhCCCceEEEEcCChhHH
Q 003311 124 QWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI-NEFSTWAPSIAAVVYDGRPDER 202 (832)
Q Consensus 124 ~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~-~E~~k~~p~~~v~~~~g~~~~r 202 (832)
+.+..........+|.-|+|+||++.|=++-. ......+|++.|--..+-.++. .++--+..+ .+.|....
T Consensus 13 ~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~---~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~----~~~~~~~~- 84 (168)
T PF00158_consen 13 EQAKRAASSDLPVLITGETGTGKELLARAIHN---NSPRKNGPFISVNCAALPEELLESELFGHEKG----AFTGARSD- 84 (168)
T ss_dssp HHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH---CSTTTTS-EEEEETTTS-HHHHHHHHHEBCSS----SSTTTSSE-
T ss_pred HHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH---hhhcccCCeEEEehhhhhcchhhhhhhccccc----cccccccc-
Confidence 33334445567789999999999987643322 1122357888887766544433 222111100 01111100
Q ss_pred HHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccC-ChhhHHHHHHH
Q 003311 203 KAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLK-NHECALAKTIS 261 (832)
Q Consensus 203 ~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriK-N~~sk~~kal~ 261 (832)
....|...+=..+++||.+.+- ..+.++.+.+.
T Consensus 85 --------------------------~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~ 118 (168)
T PF00158_consen 85 --------------------------KKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLE 118 (168)
T ss_dssp --------------------------BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHH
T ss_pred --------------------------cCCceeeccceEEeecchhhhHHHHHHHHHHHHh
Confidence 0123444455689999999984 35667777774
Done!