Query 003311
Match_columns 832
No_of_seqs 549 out of 3051
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 20:53:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 2.8E-85 9.5E-90 801.4 39.4 492 102-605 224-740 (800)
2 1z3i_X Similar to RAD54-like; 100.0 8E-78 2.7E-82 718.8 37.1 466 112-577 53-553 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 3.7E-71 1.3E-75 642.2 36.7 442 107-576 31-477 (500)
4 3dmq_A RNA polymerase-associat 100.0 7.3E-51 2.5E-55 505.1 28.6 434 112-569 151-632 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 1.1E-46 3.8E-51 429.4 31.2 430 113-570 8-493 (494)
6 2fwr_A DNA repair protein RAD2 100.0 2.7E-43 9.3E-48 405.4 19.1 375 110-569 89-471 (472)
7 1z5z_A Helicase of the SNF2/RA 100.0 3.6E-42 1.2E-46 368.3 19.5 234 336-576 12-248 (271)
8 4a2q_A RIG-I, retinoic acid in 100.0 5.3E-39 1.8E-43 393.0 31.5 439 111-575 245-771 (797)
9 4a2p_A RIG-I, retinoic acid in 100.0 7.3E-39 2.5E-43 374.2 30.4 436 113-575 6-530 (556)
10 4a2w_A RIG-I, retinoic acid in 100.0 6.2E-39 2.1E-43 397.6 28.4 436 112-575 246-771 (936)
11 3tbk_A RIG-I helicase domain; 100.0 1.3E-38 4.6E-43 371.3 26.2 433 113-573 3-527 (555)
12 3hgt_A HDA1 complex subunit 3; 100.0 2.5E-36 8.6E-41 324.7 18.7 206 349-562 20-247 (328)
13 2oca_A DAR protein, ATP-depend 100.0 1.6E-35 5.4E-40 344.0 25.3 347 113-559 112-465 (510)
14 2ykg_A Probable ATP-dependent 100.0 7.5E-35 2.6E-39 350.8 30.3 423 109-557 8-521 (696)
15 4gl2_A Interferon-induced heli 100.0 1E-35 3.4E-40 358.6 21.7 425 113-574 6-541 (699)
16 3h1t_A Type I site-specific re 100.0 2.3E-34 7.8E-39 340.5 24.8 354 111-549 175-558 (590)
17 1xti_A Probable ATP-dependent 100.0 1.2E-32 4.2E-37 307.2 32.4 329 114-564 30-368 (391)
18 1s2m_A Putative ATP-dependent 100.0 5.8E-32 2E-36 303.2 31.1 325 114-564 43-375 (400)
19 1hv8_A Putative ATP-dependent 100.0 8.8E-32 3E-36 296.8 29.2 320 113-564 27-355 (367)
20 2j0s_A ATP-dependent RNA helic 100.0 9.1E-32 3.1E-36 302.8 28.7 319 113-553 58-384 (410)
21 2z0m_A 337AA long hypothetical 100.0 1.9E-31 6.5E-36 290.9 24.0 312 113-562 15-334 (337)
22 3eiq_A Eukaryotic initiation f 100.0 4.1E-31 1.4E-35 297.2 24.0 319 113-552 61-387 (414)
23 3pey_A ATP-dependent RNA helic 100.0 1.9E-30 6.4E-35 289.1 27.1 326 113-563 26-366 (395)
24 2db3_A ATP-dependent RNA helic 100.0 1.2E-29 4.2E-34 289.1 30.8 315 113-551 77-406 (434)
25 2i4i_A ATP-dependent RNA helic 100.0 9.6E-30 3.3E-34 286.5 29.5 318 113-552 36-383 (417)
26 1fuu_A Yeast initiation factor 100.0 1.3E-31 4.4E-36 299.0 12.6 317 113-552 42-366 (394)
27 3oiy_A Reverse gyrase helicase 100.0 7.5E-29 2.6E-33 280.1 30.9 317 113-567 20-376 (414)
28 3fht_A ATP-dependent RNA helic 100.0 2.8E-29 9.7E-34 281.7 26.4 329 113-565 46-391 (412)
29 1oyw_A RECQ helicase, ATP-depe 100.0 3.7E-29 1.3E-33 291.6 27.4 303 113-545 24-338 (523)
30 2v1x_A ATP-dependent DNA helic 100.0 4.4E-28 1.5E-32 286.0 28.9 311 113-546 43-370 (591)
31 3sqw_A ATP-dependent RNA helic 100.0 1.7E-27 5.6E-32 281.3 27.3 337 113-564 42-408 (579)
32 3i5x_A ATP-dependent RNA helic 100.0 3.5E-27 1.2E-31 277.1 28.9 337 113-564 93-459 (563)
33 3fho_A ATP-dependent RNA helic 100.0 9.3E-29 3.2E-33 287.5 10.9 316 114-551 141-469 (508)
34 2eyq_A TRCF, transcription-rep 99.9 1.4E-26 4.8E-31 291.4 28.4 309 111-552 600-922 (1151)
35 2xgj_A ATP-dependent RNA helic 99.9 2.9E-25 1E-29 275.7 33.6 351 111-553 83-500 (1010)
36 3fmp_B ATP-dependent RNA helic 99.9 1.3E-27 4.5E-32 275.3 9.6 316 113-551 113-445 (479)
37 1gm5_A RECG; helicase, replica 99.9 1.8E-26 6E-31 278.7 14.4 307 112-545 366-692 (780)
38 2va8_A SSO2462, SKI2-type heli 99.9 2.8E-24 9.7E-29 259.8 26.0 327 114-553 30-409 (715)
39 3l9o_A ATP-dependent RNA helic 99.9 4.1E-24 1.4E-28 267.7 27.6 366 113-557 183-602 (1108)
40 2zj8_A DNA helicase, putative 99.9 2.1E-24 7.2E-29 261.1 23.5 320 114-556 23-391 (720)
41 4a4z_A Antiviral helicase SKI2 99.9 1.5E-23 5E-28 260.4 30.0 376 110-561 35-501 (997)
42 2p6r_A Afuhel308 helicase; pro 99.9 1.7E-24 5.7E-29 261.3 20.1 320 114-555 25-391 (702)
43 4ddu_A Reverse gyrase; topoiso 99.9 1.1E-22 3.9E-27 254.5 30.9 322 112-569 76-505 (1104)
44 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 8.7E-23 3E-27 252.6 29.2 344 113-550 270-707 (1038)
45 1gku_B Reverse gyrase, TOP-RG; 99.9 1.6E-21 5.3E-26 244.1 21.4 319 112-568 55-468 (1054)
46 2v6i_A RNA helicase; membrane, 99.8 5.4E-20 1.8E-24 209.4 15.2 95 440-542 171-282 (431)
47 1rif_A DAR protein, DNA helica 99.8 7E-20 2.4E-24 196.3 10.9 163 113-292 112-278 (282)
48 2jlq_A Serine protease subunit 99.8 2.9E-19 9.7E-24 204.6 15.2 95 439-541 187-301 (451)
49 1yks_A Genome polyprotein [con 99.8 2E-19 6.9E-24 205.1 13.2 102 439-549 176-296 (440)
50 1tf5_A Preprotein translocase 99.8 6E-18 2.1E-22 201.6 25.6 115 423-542 415-537 (844)
51 2z83_A Helicase/nucleoside tri 99.8 6E-19 2E-23 202.3 14.9 105 439-552 189-313 (459)
52 2wv9_A Flavivirin protease NS2 99.8 4.3E-19 1.5E-23 211.7 13.8 122 439-569 409-551 (673)
53 2fz4_A DNA repair protein RAD2 99.8 2.3E-18 7.9E-23 180.2 15.8 145 108-280 87-233 (237)
54 2hjv_A ATP-dependent RNA helic 99.8 7.2E-18 2.5E-22 165.9 17.4 134 422-564 19-152 (163)
55 2fsf_A Preprotein translocase 99.8 1.2E-17 4.1E-22 198.4 21.6 115 423-542 424-575 (853)
56 4f92_B U5 small nuclear ribonu 99.8 5.9E-17 2E-21 210.0 29.0 320 113-552 925-1308(1724)
57 1t5i_A C_terminal domain of A 99.8 6.1E-18 2.1E-22 168.1 15.0 133 422-562 15-147 (172)
58 1nkt_A Preprotein translocase 99.8 2.5E-17 8.7E-22 195.9 22.7 115 423-542 443-609 (922)
59 2whx_A Serine protease/ntpase/ 99.8 2.6E-18 8.9E-23 203.4 14.1 285 128-566 181-493 (618)
60 2jgn_A DBX, DDX3, ATP-dependen 99.7 3.7E-18 1.3E-22 171.8 12.4 125 422-552 29-153 (185)
61 2xau_A PRE-mRNA-splicing facto 99.7 8.7E-18 3E-22 203.8 15.0 110 439-554 302-445 (773)
62 4f92_B U5 small nuclear ribonu 99.7 6.9E-17 2.4E-21 209.4 23.2 324 113-554 78-475 (1724)
63 3rc3_A ATP-dependent RNA helic 99.7 6E-18 2.1E-22 201.4 12.2 108 442-551 322-444 (677)
64 1fuk_A Eukaryotic initiation f 99.7 2.9E-17 9.9E-22 161.9 15.0 125 424-555 16-140 (165)
65 2p6n_A ATP-dependent RNA helic 99.7 2E-17 6.9E-22 167.4 12.2 123 422-552 39-161 (191)
66 2rb4_A ATP-dependent RNA helic 99.7 7.1E-17 2.4E-21 160.6 15.8 123 424-553 20-148 (175)
67 3o8b_A HCV NS3 protease/helica 99.7 2E-17 6.9E-22 195.1 12.5 261 132-555 231-517 (666)
68 3eaq_A Heat resistant RNA depe 99.7 2.4E-16 8.1E-21 162.1 16.0 133 422-563 15-147 (212)
69 1c4o_A DNA nucleotide excision 99.7 7.9E-15 2.7E-19 175.2 31.2 125 424-554 423-552 (664)
70 2gxq_A Heat resistant RNA depe 99.7 2.8E-16 9.6E-21 159.5 15.1 156 113-276 22-186 (207)
71 1t6n_A Probable ATP-dependent 99.7 4.7E-16 1.6E-20 159.8 15.8 162 114-283 36-207 (220)
72 2yjt_D ATP-dependent RNA helic 99.5 4.2E-18 1.4E-22 168.8 0.0 131 423-562 15-145 (170)
73 3b6e_A Interferon-induced heli 99.7 1.2E-16 4.3E-21 162.7 10.4 155 112-274 31-216 (216)
74 3jux_A Protein translocase sub 99.6 1.3E-14 4.5E-19 169.4 25.8 123 422-551 456-586 (822)
75 1vec_A ATP-dependent RNA helic 99.6 1E-15 3.4E-20 155.4 14.5 156 113-276 24-188 (206)
76 3ber_A Probable ATP-dependent 99.6 2.4E-15 8.1E-20 158.3 16.7 156 113-276 64-228 (249)
77 2oxc_A Probable ATP-dependent 99.6 1.5E-15 5.3E-20 157.4 15.0 153 114-275 46-208 (230)
78 2pl3_A Probable ATP-dependent 99.6 2.6E-15 8.8E-20 156.1 16.3 155 113-276 46-213 (236)
79 1q0u_A Bstdead; DEAD protein, 99.6 8.3E-16 2.8E-20 158.0 11.6 162 113-283 25-198 (219)
80 3i32_A Heat resistant RNA depe 99.6 3.8E-15 1.3E-19 161.0 15.4 133 422-563 12-144 (300)
81 1qde_A EIF4A, translation init 99.6 3.2E-15 1.1E-19 153.8 14.1 155 113-276 35-197 (224)
82 2d7d_A Uvrabc system protein B 99.6 3.3E-14 1.1E-18 169.8 23.7 125 424-554 429-558 (661)
83 1wrb_A DJVLGB; RNA helicase, D 99.6 5.9E-15 2E-19 155.1 14.3 156 113-276 44-220 (253)
84 3bor_A Human initiation factor 99.6 4.6E-15 1.6E-19 154.6 12.9 157 113-276 51-215 (237)
85 3iuy_A Probable ATP-dependent 99.5 5.9E-14 2E-18 145.0 15.4 155 113-275 41-208 (228)
86 3ly5_A ATP-dependent RNA helic 99.5 1.6E-13 5.5E-18 145.4 16.3 156 113-276 75-243 (262)
87 3dkp_A Probable ATP-dependent 99.5 7.4E-14 2.5E-18 145.9 13.2 156 113-275 50-220 (245)
88 3fe2_A Probable ATP-dependent 99.5 2.2E-13 7.5E-18 142.3 16.0 155 113-275 50-217 (242)
89 2vl7_A XPD; helicase, unknown 99.4 7.8E-12 2.7E-16 146.1 20.2 131 111-249 4-187 (540)
90 2ipc_A Preprotein translocase 99.3 8E-11 2.7E-15 140.1 24.2 146 112-286 77-238 (997)
91 3fmo_B ATP-dependent RNA helic 99.3 3.3E-12 1.1E-16 138.1 9.5 155 113-276 113-278 (300)
92 4a15_A XPD helicase, ATP-depen 99.0 5E-08 1.7E-12 115.5 27.6 82 114-197 3-87 (620)
93 3crv_A XPD/RAD3 related DNA he 98.8 7.8E-09 2.7E-13 121.0 11.4 134 112-251 1-187 (551)
94 3llm_A ATP-dependent RNA helic 98.8 2.2E-08 7.5E-13 103.9 12.3 150 113-276 60-219 (235)
95 4b3f_X DNA-binding protein smu 97.7 6.9E-05 2.4E-09 89.2 10.5 70 112-187 187-257 (646)
96 2gk6_A Regulator of nonsense t 97.5 0.00045 1.5E-08 81.8 12.7 152 113-278 179-376 (624)
97 2xzl_A ATP-dependent helicase 97.2 0.00073 2.5E-08 82.1 10.7 150 113-277 359-553 (802)
98 2wjy_A Regulator of nonsense t 97.2 0.0013 4.4E-08 79.9 11.7 151 113-277 355-551 (800)
99 3upu_A ATP-dependent DNA helic 97.1 0.0017 5.7E-08 73.9 11.5 142 113-277 24-166 (459)
100 3e1s_A Exodeoxyribonuclease V, 97.1 0.00089 3E-08 78.4 9.1 132 112-278 187-318 (574)
101 3lfu_A DNA helicase II; SF1 he 97.0 0.014 4.7E-07 69.0 17.9 67 114-186 9-77 (647)
102 1w36_D RECD, exodeoxyribonucle 96.8 0.0032 1.1E-07 74.2 10.7 145 116-279 151-302 (608)
103 2o0j_A Terminase, DNA packagin 96.4 0.062 2.1E-06 59.4 16.8 155 113-289 162-325 (385)
104 2orw_A Thymidine kinase; TMTK, 96.2 0.0084 2.9E-07 59.4 7.5 35 136-173 6-40 (184)
105 2b8t_A Thymidine kinase; deoxy 95.8 0.037 1.3E-06 56.6 10.3 109 136-274 15-124 (223)
106 3cpe_A Terminase, DNA packagin 95.3 0.24 8.3E-06 57.9 16.3 147 112-278 161-316 (592)
107 3vkw_A Replicase large subunit 95.2 0.02 6.7E-07 64.4 6.2 108 136-278 164-272 (446)
108 1xx6_A Thymidine kinase; NESG, 94.9 0.11 3.6E-06 51.8 10.1 34 137-173 12-45 (191)
109 3syl_A Protein CBBX; photosynt 94.9 0.068 2.3E-06 56.6 9.3 40 135-174 69-109 (309)
110 2j9r_A Thymidine kinase; TK1, 94.7 0.12 4.3E-06 52.2 10.1 34 137-173 32-65 (214)
111 3u61_B DNA polymerase accessor 94.3 0.2 6.8E-06 53.5 11.1 41 237-277 105-147 (324)
112 1l8q_A Chromosomal replication 94.2 0.25 8.5E-06 52.8 11.7 35 134-171 38-72 (324)
113 1a5t_A Delta prime, HOLB; zinc 94.2 0.22 7.5E-06 53.8 11.3 46 115-160 3-51 (334)
114 1uaa_A REP helicase, protein ( 94.1 0.36 1.2E-05 57.2 14.0 68 114-187 2-71 (673)
115 2chg_A Replication factor C sm 94.0 0.71 2.4E-05 45.2 14.0 40 237-276 102-142 (226)
116 2orv_A Thymidine kinase; TP4A 93.4 0.39 1.3E-05 49.1 10.7 34 137-173 23-56 (234)
117 3bos_A Putative DNA replicatio 93.0 0.21 7.3E-06 50.0 8.2 40 121-160 38-79 (242)
118 3n70_A Transport activator; si 92.9 0.15 5.2E-06 47.8 6.4 37 239-275 78-115 (145)
119 1sxj_D Activator 1 41 kDa subu 92.7 0.27 9.4E-06 52.7 9.0 40 237-276 133-173 (353)
120 2p65_A Hypothetical protein PF 92.6 0.71 2.4E-05 44.0 11.0 27 133-159 43-69 (187)
121 1njg_A DNA polymerase III subu 92.5 1.3 4.4E-05 43.8 13.1 44 115-158 27-70 (250)
122 3h4m_A Proteasome-activating n 92.3 0.34 1.2E-05 50.5 8.8 37 132-174 50-86 (285)
123 3te6_A Regulatory protein SIR3 92.2 3.3 0.00011 44.3 16.6 45 116-160 25-72 (318)
124 2gno_A DNA polymerase III, gam 92.1 0.53 1.8E-05 50.2 10.1 38 237-274 82-120 (305)
125 1iqp_A RFCS; clamp loader, ext 92.0 1.4 4.6E-05 46.5 13.3 40 237-276 110-150 (327)
126 3ec2_A DNA replication protein 91.9 2.4 8E-05 40.7 13.9 45 116-160 16-65 (180)
127 1sxj_B Activator 1 37 kDa subu 91.5 0.62 2.1E-05 49.1 9.8 40 237-276 107-147 (323)
128 2qz4_A Paraplegin; AAA+, SPG7, 91.4 1.1 3.9E-05 45.6 11.5 36 134-175 40-75 (262)
129 1jbk_A CLPB protein; beta barr 91.2 3.4 0.00012 39.0 14.2 26 134-159 44-69 (195)
130 3vfd_A Spastin; ATPase, microt 91.2 0.91 3.1E-05 49.9 11.2 40 134-179 149-188 (389)
131 3co5_A Putative two-component 91.0 0.18 6.2E-06 47.2 4.5 23 131-153 25-47 (143)
132 3eie_A Vacuolar protein sortin 91.0 0.46 1.6E-05 50.8 8.3 33 134-172 52-84 (322)
133 2qby_B CDC6 homolog 3, cell di 90.7 0.72 2.5E-05 50.0 9.7 44 116-159 25-71 (384)
134 4b4t_J 26S protease regulatory 90.7 1.5 5E-05 48.7 12.0 42 133-180 182-223 (405)
135 2z4s_A Chromosomal replication 90.6 1.1 3.9E-05 50.2 11.3 27 134-160 131-157 (440)
136 1jr3_A DNA polymerase III subu 90.4 1.8 6.3E-05 46.5 12.6 38 237-274 119-157 (373)
137 2v1u_A Cell division control p 90.4 0.79 2.7E-05 49.5 9.6 44 116-159 24-70 (387)
138 3uk6_A RUVB-like 2; hexameric 90.2 0.7 2.4E-05 50.0 9.0 54 115-172 48-105 (368)
139 2qp9_X Vacuolar protein sortin 90.2 0.51 1.7E-05 51.4 7.8 24 134-157 85-108 (355)
140 1w4r_A Thymidine kinase; type 90.1 0.75 2.6E-05 45.8 8.2 34 137-173 24-57 (195)
141 1ofh_A ATP-dependent HSL prote 89.8 1.5 5E-05 45.9 10.8 25 133-157 50-74 (310)
142 2bjv_A PSP operon transcriptio 89.6 0.44 1.5E-05 49.2 6.4 39 130-171 26-64 (265)
143 1xwi_A SKD1 protein; VPS4B, AA 89.4 1 3.4E-05 48.3 9.3 38 134-176 46-83 (322)
144 1fnn_A CDC6P, cell division co 88.9 4.9 0.00017 43.2 14.5 23 135-157 46-68 (389)
145 3e2i_A Thymidine kinase; Zn-bi 88.9 0.96 3.3E-05 45.8 8.0 34 137-173 32-65 (219)
146 2zan_A Vacuolar protein sortin 88.2 1.2 4.2E-05 50.0 9.2 41 134-179 168-208 (444)
147 1ojl_A Transcriptional regulat 87.1 2.6 8.8E-05 44.7 10.5 42 131-175 23-64 (304)
148 1sxj_E Activator 1 40 kDa subu 87.0 2.5 8.6E-05 45.2 10.6 42 237-278 134-176 (354)
149 1sxj_C Activator 1 40 kDa subu 86.5 2.5 8.6E-05 45.2 10.2 40 237-276 110-150 (340)
150 1gm5_A RECG; helicase, replica 86.2 4.2 0.00014 49.0 12.8 98 422-521 399-500 (780)
151 4fcw_A Chaperone protein CLPB; 85.9 4.7 0.00016 42.1 11.8 34 135-171 49-82 (311)
152 3d8b_A Fidgetin-like protein 1 85.8 2.1 7E-05 46.5 9.1 37 133-175 117-153 (357)
153 3cf0_A Transitional endoplasmi 85.5 2.1 7.2E-05 45.1 8.8 24 133-156 49-72 (301)
154 4b4t_H 26S protease regulatory 84.9 3.8 0.00013 46.1 10.8 41 133-179 243-283 (467)
155 2r6a_A DNAB helicase, replicat 84.5 7.2 0.00024 43.7 13.1 126 122-251 192-327 (454)
156 2q6t_A DNAB replication FORK h 84.3 8.1 0.00028 43.1 13.4 125 122-251 189-324 (444)
157 2chq_A Replication factor C sm 84.3 0.98 3.4E-05 47.4 5.5 24 135-158 40-63 (319)
158 1sxj_A Activator 1 95 kDa subu 84.3 2.4 8.3E-05 48.5 9.2 24 134-157 78-101 (516)
159 3t15_A Ribulose bisphosphate c 84.2 1.8 6.1E-05 45.6 7.5 33 134-172 37-69 (293)
160 2qby_A CDC6 homolog 1, cell di 84.2 2.8 9.7E-05 44.9 9.3 45 116-160 25-72 (386)
161 3b9p_A CG5977-PA, isoform A; A 84.0 2.8 9.5E-05 43.7 8.9 24 133-156 54-77 (297)
162 2r2a_A Uncharacterized protein 83.7 0.6 2.1E-05 46.6 3.3 22 136-157 8-29 (199)
163 3dm5_A SRP54, signal recogniti 83.3 6.6 0.00023 44.0 11.9 32 137-171 104-135 (443)
164 4b4t_L 26S protease subunit RP 83.0 2.7 9.3E-05 47.0 8.6 40 134-179 216-255 (437)
165 3oiy_A Reverse gyrase helicase 82.3 7.2 0.00025 42.6 11.8 78 438-517 62-145 (414)
166 1d2n_A N-ethylmaleimide-sensit 81.7 4.5 0.00015 41.6 9.3 22 135-156 66-87 (272)
167 1g5t_A COB(I)alamin adenosyltr 81.6 15 0.00051 36.4 12.4 138 133-290 28-174 (196)
168 4b4t_I 26S protease regulatory 81.4 2.7 9.2E-05 46.9 7.7 41 133-179 216-256 (437)
169 2ce7_A Cell division protein F 81.2 7.1 0.00024 44.2 11.3 34 134-173 50-83 (476)
170 3hjh_A Transcription-repair-co 80.6 5.3 0.00018 45.3 10.0 85 135-228 16-115 (483)
171 4dzz_A Plasmid partitioning pr 80.3 7.1 0.00024 37.8 9.8 112 139-290 8-121 (206)
172 3kl4_A SRP54, signal recogniti 80.0 8.2 0.00028 43.1 11.2 35 137-173 101-135 (433)
173 3pvs_A Replication-associated 79.8 8.9 0.0003 43.0 11.5 22 135-156 52-73 (447)
174 2iut_A DNA translocase FTSK; n 79.3 9.2 0.00032 44.2 11.5 42 133-174 214-256 (574)
175 3hu3_A Transitional endoplasmi 78.7 2.4 8.4E-05 48.2 6.5 33 133-171 238-270 (489)
176 1r6b_X CLPA protein; AAA+, N-t 78.6 13 0.00044 44.4 13.2 27 133-159 207-233 (758)
177 2kjq_A DNAA-related protein; s 78.1 7.2 0.00025 36.5 8.6 27 132-158 35-61 (149)
178 3bh0_A DNAB-like replicative h 77.7 24 0.00081 37.3 13.6 60 122-184 57-116 (315)
179 1w5s_A Origin recognition comp 77.6 6.1 0.00021 42.9 9.2 44 116-159 27-78 (412)
180 4a1f_A DNAB helicase, replicat 77.5 15 0.00051 39.5 12.0 127 122-252 35-171 (338)
181 3k1j_A LON protease, ATP-depen 77.2 3 0.0001 48.7 6.8 33 121-156 51-83 (604)
182 2qen_A Walker-type ATPase; unk 76.9 16 0.00055 38.3 12.0 37 115-154 16-52 (350)
183 2zts_A Putative uncharacterize 76.7 15 0.0005 36.6 11.1 51 134-186 31-81 (251)
184 3fe2_A Probable ATP-dependent 76.1 30 0.001 34.5 13.3 123 360-517 51-182 (242)
185 2cvh_A DNA repair and recombin 76.1 9 0.00031 37.5 9.1 56 122-183 8-66 (220)
186 2zr9_A Protein RECA, recombina 75.5 12 0.00039 40.6 10.4 55 122-179 48-104 (349)
187 3crv_A XPD/RAD3 related DNA he 75.1 11 0.00036 43.4 10.6 85 428-522 380-473 (551)
188 2w58_A DNAI, primosome compone 74.7 4.5 0.00015 39.4 6.4 34 134-170 55-88 (202)
189 1qvr_A CLPB protein; coiled co 74.2 15 0.00052 44.5 12.2 27 133-159 191-217 (854)
190 1t6n_A Probable ATP-dependent 73.2 38 0.0013 33.0 13.0 74 440-518 82-165 (220)
191 3bgw_A DNAB-like replicative h 73.1 15 0.00052 41.0 11.0 58 122-182 186-243 (444)
192 3ber_A Probable ATP-dependent 72.7 31 0.0011 34.8 12.5 72 440-517 111-192 (249)
193 1pjr_A PCRA; DNA repair, DNA r 71.6 5.3 0.00018 47.7 7.1 56 114-175 11-67 (724)
194 4ddu_A Reverse gyrase; topoiso 69.8 18 0.00062 45.3 11.7 79 438-518 119-203 (1104)
195 3pxi_A Negative regulator of g 69.7 8.4 0.00029 46.1 8.4 32 136-170 524-555 (758)
196 2w0m_A SSO2452; RECA, SSPF, un 69.5 15 0.00053 35.9 9.1 47 132-181 22-68 (235)
197 2px0_A Flagellar biosynthesis 68.9 29 0.00099 36.4 11.4 33 137-171 109-141 (296)
198 1xp8_A RECA protein, recombina 67.6 19 0.00065 39.1 9.9 56 122-180 61-118 (366)
199 3iuy_A Probable ATP-dependent 66.6 33 0.0011 33.7 10.9 124 360-517 42-173 (228)
200 2pl3_A Probable ATP-dependent 65.6 45 0.0016 32.9 11.8 43 439-481 96-142 (236)
201 2fna_A Conserved hypothetical 65.4 66 0.0023 33.4 13.7 36 116-156 18-53 (357)
202 1vma_A Cell division protein F 65.1 25 0.00085 37.2 10.0 32 137-171 108-139 (306)
203 1xti_A Probable ATP-dependent 65.0 47 0.0016 35.3 12.5 73 440-517 76-158 (391)
204 2oxc_A Probable ATP-dependent 64.8 50 0.0017 32.6 11.8 72 439-517 91-172 (230)
205 3ly5_A ATP-dependent RNA helic 63.2 1E+02 0.0035 31.1 14.1 72 439-517 125-207 (262)
206 1zu4_A FTSY; GTPase, signal re 62.2 36 0.0012 36.1 10.7 32 137-171 109-140 (320)
207 2qgz_A Helicase loader, putati 61.6 10 0.00035 40.1 6.2 26 133-158 152-177 (308)
208 4b4t_M 26S protease regulatory 61.1 3.9 0.00013 45.7 2.9 41 133-179 215-255 (434)
209 2eyq_A TRCF, transcription-rep 60.8 23 0.0008 44.5 10.2 93 423-517 635-731 (1151)
210 3u4q_B ATP-dependent helicase/ 59.5 9.6 0.00033 48.0 6.4 52 137-188 5-56 (1166)
211 1wp9_A ATP-dependent RNA helic 58.0 43 0.0015 36.3 10.8 74 438-518 50-132 (494)
212 1ls1_A Signal recognition part 57.8 94 0.0032 32.3 12.9 33 137-172 102-134 (295)
213 2zpa_A Uncharacterized protein 56.9 29 0.00099 40.8 9.4 54 113-174 174-227 (671)
214 2v1x_A ATP-dependent DNA helic 56.9 31 0.0011 40.0 9.7 62 440-501 84-145 (591)
215 3q9l_A Septum site-determining 56.6 27 0.00091 35.0 8.2 32 137-171 7-38 (260)
216 3u4q_A ATP-dependent helicase/ 56.4 14 0.00047 47.0 7.0 59 112-176 8-69 (1232)
217 1qde_A EIF4A, translation init 55.8 47 0.0016 32.4 9.7 41 439-479 81-125 (224)
218 1nlf_A Regulatory protein REPA 55.8 33 0.0011 35.2 8.9 51 132-183 29-87 (279)
219 4b4t_K 26S protease regulatory 55.0 5.5 0.00019 44.4 2.8 41 133-179 206-246 (428)
220 2z43_A DNA repair and recombin 54.2 57 0.002 34.4 10.6 54 122-175 95-152 (324)
221 1vec_A ATP-dependent RNA helic 53.6 1.2E+02 0.0041 28.8 12.2 73 439-517 70-152 (206)
222 1lv7_A FTSH; alpha/beta domain 53.4 21 0.00073 36.0 6.8 36 134-175 46-81 (257)
223 2gxq_A Heat resistant RNA depe 52.2 1.3E+02 0.0043 28.6 12.1 73 439-517 71-150 (207)
224 2c9o_A RUVB-like 1; hexameric 51.9 14 0.00047 41.3 5.4 39 134-176 64-102 (456)
225 2xxa_A Signal recognition part 51.8 1E+02 0.0035 34.1 12.5 34 137-172 104-137 (433)
226 1u94_A RECA protein, recombina 51.6 55 0.0019 35.2 10.0 52 122-176 50-103 (356)
227 3tbk_A RIG-I helicase domain; 51.2 34 0.0012 38.2 8.8 72 440-517 52-133 (555)
228 1cr0_A DNA primase/helicase; R 50.7 34 0.0012 35.3 8.0 49 123-173 25-73 (296)
229 1fuu_A Yeast initiation factor 50.3 1.2E+02 0.0041 31.9 12.6 74 439-519 88-170 (394)
230 1n0w_A DNA repair protein RAD5 50.0 1E+02 0.0035 30.1 11.2 53 122-174 12-68 (243)
231 2ffh_A Protein (FFH); SRP54, s 48.9 1E+02 0.0035 34.1 11.8 33 137-172 102-134 (425)
232 3bor_A Human initiation factor 48.4 98 0.0034 30.5 10.8 39 439-477 97-139 (237)
233 2j48_A Two-component sensor ki 48.3 26 0.0009 29.4 5.7 92 439-536 24-117 (119)
234 3io5_A Recombination and repai 47.8 78 0.0027 33.8 10.1 42 136-178 31-72 (333)
235 3fkq_A NTRC-like two-domain pr 47.6 57 0.002 35.1 9.5 32 137-171 148-179 (373)
236 4a2p_A RIG-I, retinoic acid in 47.3 71 0.0024 35.7 10.6 73 440-518 55-137 (556)
237 3cf2_A TER ATPase, transitiona 47.1 13 0.00045 44.8 4.5 40 134-179 512-551 (806)
238 1oyw_A RECQ helicase, ATP-depe 47.0 55 0.0019 37.1 9.6 62 440-503 65-126 (523)
239 4a2q_A RIG-I, retinoic acid in 46.9 60 0.002 38.9 10.3 72 440-517 296-377 (797)
240 3g5j_A Putative ATP/GTP bindin 46.3 25 0.00085 31.4 5.3 54 424-477 73-127 (134)
241 3hr8_A Protein RECA; alpha and 46.1 74 0.0025 34.3 9.9 40 136-178 64-103 (356)
242 1gku_B Reverse gyrase, TOP-RG; 45.3 75 0.0026 39.5 11.1 77 437-517 96-181 (1054)
243 2dr3_A UPF0273 protein PH0284; 45.3 41 0.0014 33.2 7.3 49 133-184 23-71 (247)
244 3cmu_A Protein RECA, recombina 44.7 42 0.0014 44.5 8.8 53 130-187 1424-1476(2050)
245 3a10_A Response regulator; pho 44.7 50 0.0017 27.9 6.9 17 519-535 99-115 (116)
246 3ipz_A Monothiol glutaredoxin- 44.1 72 0.0025 27.7 7.9 56 432-488 10-71 (109)
247 2r44_A Uncharacterized protein 43.6 13 0.00043 39.4 3.2 27 130-156 43-69 (331)
248 2l82_A Designed protein OR32; 43.4 64 0.0022 28.4 7.0 49 442-490 4-52 (162)
249 1u6t_A SH3 domain-binding glut 42.9 35 0.0012 31.0 5.6 45 443-487 2-53 (121)
250 3zyw_A Glutaredoxin-3; metal b 42.7 81 0.0028 27.6 8.0 48 440-487 15-68 (111)
251 1tue_A Replication protein E1; 42.4 28 0.00094 34.9 5.3 23 135-157 60-82 (212)
252 1s2m_A Putative ATP-dependent 42.3 1.8E+02 0.0061 30.8 12.4 75 439-519 88-171 (400)
253 2z0m_A 337AA long hypothetical 42.0 1.9E+02 0.0064 29.5 12.2 71 440-517 56-135 (337)
254 3i42_A Response regulator rece 41.6 42 0.0014 29.0 6.0 96 439-540 26-125 (127)
255 3gk5_A Uncharacterized rhodane 41.0 36 0.0012 29.6 5.4 39 438-476 53-91 (108)
256 2yan_A Glutaredoxin-3; oxidore 40.6 86 0.0029 26.8 7.8 60 432-492 9-74 (105)
257 3hws_A ATP-dependent CLP prote 40.5 32 0.0011 36.9 5.9 34 133-172 51-84 (363)
258 2j37_W Signal recognition part 40.1 1E+02 0.0036 34.8 10.3 33 137-172 105-137 (504)
259 1v5w_A DMC1, meiotic recombina 39.9 1.3E+02 0.0046 31.8 10.8 54 122-175 110-167 (343)
260 1q0u_A Bstdead; DEAD protein, 39.7 1.5E+02 0.0052 28.5 10.5 38 440-477 72-117 (219)
261 1wrb_A DJVLGB; RNA helicase, D 39.6 2.7E+02 0.0092 27.4 12.6 127 360-517 45-180 (253)
262 1hv8_A Putative ATP-dependent 39.2 2.4E+02 0.0084 29.0 12.7 72 439-517 73-153 (367)
263 3gx8_A Monothiol glutaredoxin- 39.2 1.3E+02 0.0045 26.7 9.0 49 440-488 15-72 (121)
264 3eqz_A Response regulator; str 39.0 88 0.003 27.0 7.8 75 465-539 47-127 (135)
265 3lte_A Response regulator; str 38.9 51 0.0017 28.6 6.1 29 440-468 6-34 (132)
266 3grc_A Sensor protein, kinase; 38.9 70 0.0024 28.0 7.2 27 441-467 7-33 (140)
267 3dkp_A Probable ATP-dependent 38.9 76 0.0026 31.4 8.2 36 439-474 97-136 (245)
268 2db3_A ATP-dependent RNA helic 38.2 1.8E+02 0.006 31.7 11.7 73 439-517 128-209 (434)
269 3qxc_A Dethiobiotin synthetase 38.1 20 0.00067 36.6 3.5 25 137-161 26-50 (242)
270 3cg4_A Response regulator rece 37.9 1.3E+02 0.0043 26.3 8.8 29 440-468 7-35 (142)
271 3of5_A Dethiobiotin synthetase 37.5 20 0.00068 36.1 3.5 25 137-161 9-33 (228)
272 3cf2_A TER ATPase, transitiona 37.3 19 0.00066 43.3 3.8 22 134-155 239-260 (806)
273 3nhm_A Response regulator; pro 37.3 1.2E+02 0.0041 26.1 8.4 94 439-536 26-121 (133)
274 1hqc_A RUVB; extended AAA-ATPa 36.9 52 0.0018 34.1 6.8 42 116-157 17-62 (324)
275 2wem_A Glutaredoxin-related pr 36.9 1.5E+02 0.005 26.4 8.8 49 440-488 19-74 (118)
276 3fgn_A Dethiobiotin synthetase 35.7 22 0.00076 36.4 3.5 25 137-161 31-55 (251)
277 3cmu_A Protein RECA, recombina 35.6 1.3E+02 0.0043 40.1 11.1 56 122-180 719-776 (2050)
278 3i5x_A ATP-dependent RNA helic 35.4 1.3E+02 0.0043 34.0 10.2 77 145-223 320-400 (563)
279 2i1q_A DNA repair and recombin 35.4 1.1E+02 0.0038 31.8 9.2 35 122-156 86-121 (322)
280 2oca_A DAR protein, ATP-depend 35.1 1.1E+02 0.0036 34.2 9.4 115 358-518 111-232 (510)
281 2j0s_A ATP-dependent RNA helic 34.7 2.7E+02 0.0091 29.5 12.3 46 439-484 104-153 (410)
282 1u0j_A DNA replication protein 34.5 46 0.0016 34.5 5.6 34 123-156 90-127 (267)
283 1byi_A Dethiobiotin synthase; 34.3 45 0.0015 32.6 5.4 33 137-172 6-38 (224)
284 3pfi_A Holliday junction ATP-d 34.2 53 0.0018 34.4 6.4 22 134-155 56-77 (338)
285 4ehx_A Tetraacyldisaccharide 4 34.2 54 0.0018 34.7 6.3 18 142-159 47-64 (315)
286 2r8r_A Sensor protein; KDPD, P 34.0 46 0.0016 33.7 5.4 45 134-180 7-52 (228)
287 1wik_A Thioredoxin-like protei 33.9 1.1E+02 0.0039 26.2 7.5 53 440-492 14-72 (109)
288 2wul_A Glutaredoxin related pr 33.7 1.6E+02 0.0054 26.4 8.4 57 440-497 19-82 (118)
289 2pt7_A CAG-ALFA; ATPase, prote 33.3 2E+02 0.0067 30.4 10.7 21 130-150 168-188 (330)
290 2i4i_A ATP-dependent RNA helic 33.2 3.4E+02 0.012 28.6 12.9 131 360-517 37-181 (417)
291 3cmw_A Protein RECA, recombina 32.8 1.1E+02 0.0037 40.0 9.7 43 133-178 732-774 (1706)
292 3sqw_A ATP-dependent RNA helic 32.5 1.4E+02 0.0049 33.8 10.2 74 148-223 272-349 (579)
293 3b6e_A Interferon-induced heli 32.5 72 0.0024 30.5 6.6 38 439-476 81-122 (216)
294 2b4a_A BH3024; flavodoxin-like 32.2 2.5E+02 0.0084 24.2 10.5 90 440-536 39-130 (138)
295 2r62_A Cell division protease 31.8 35 0.0012 34.5 4.2 25 133-157 44-68 (268)
296 2ehv_A Hypothetical protein PH 31.0 3.1E+02 0.011 26.6 11.3 44 133-179 30-74 (251)
297 4ag6_A VIRB4 ATPase, type IV s 30.3 71 0.0024 34.5 6.7 47 132-181 34-80 (392)
298 3eul_A Possible nitrate/nitrit 30.0 1.7E+02 0.0057 25.9 8.4 81 189-275 15-99 (152)
299 1t5i_A C_terminal domain of A 29.8 1.9E+02 0.0065 27.0 9.0 55 164-222 31-88 (172)
300 2wci_A Glutaredoxin-4; redox-a 29.8 1.4E+02 0.0047 27.3 7.5 50 441-490 35-90 (135)
301 3eiq_A Eukaryotic initiation f 29.7 4.3E+02 0.015 27.7 12.9 74 439-517 107-189 (414)
302 2hjv_A ATP-dependent RNA helic 29.5 1.8E+02 0.0063 26.7 8.7 55 164-222 35-92 (163)
303 3nbx_X ATPase RAVA; AAA+ ATPas 29.1 28 0.00097 39.5 3.2 28 128-155 36-63 (500)
304 4gl2_A Interferon-induced heli 28.9 42 0.0014 39.2 4.8 72 440-517 56-142 (699)
305 1e9r_A Conjugal transfer prote 28.9 45 0.0015 36.6 4.8 39 133-174 53-91 (437)
306 1ypw_A Transitional endoplasmi 28.6 36 0.0012 41.0 4.2 22 133-154 238-259 (806)
307 2jgn_A DBX, DDX3, ATP-dependen 28.3 1.2E+02 0.0042 28.8 7.3 56 163-222 45-103 (185)
308 2p6n_A ATP-dependent RNA helic 27.4 1.9E+02 0.0064 27.7 8.5 55 164-222 54-111 (191)
309 3foj_A Uncharacterized protein 27.3 59 0.002 27.6 4.3 37 439-475 55-91 (100)
310 1um8_A ATP-dependent CLP prote 27.0 52 0.0018 35.3 4.8 25 133-157 72-96 (376)
311 4e7p_A Response regulator; DNA 26.9 2.4E+02 0.0082 24.8 8.8 82 190-275 21-104 (150)
312 3e70_C DPA, signal recognition 26.7 3.7E+02 0.013 28.2 11.4 31 137-170 133-163 (328)
313 3eaq_A Heat resistant RNA depe 26.7 1.9E+02 0.0064 28.1 8.6 55 164-222 31-88 (212)
314 3pxg_A Negative regulator of g 26.5 83 0.0028 35.1 6.5 43 116-159 185-227 (468)
315 3dmn_A Putative DNA helicase; 26.2 3E+02 0.01 25.8 9.6 66 439-522 60-125 (174)
316 3eme_A Rhodanese-like domain p 26.0 58 0.002 27.7 4.1 37 439-475 55-91 (103)
317 3hix_A ALR3790 protein; rhodan 25.9 80 0.0027 27.1 5.0 39 438-476 50-89 (106)
318 1j8m_F SRP54, signal recogniti 25.9 77 0.0026 33.1 5.7 33 137-172 102-134 (297)
319 2yhs_A FTSY, cell division pro 25.7 3.5E+02 0.012 30.4 11.4 31 137-170 297-327 (503)
320 2rb4_A ATP-dependent RNA helic 25.3 2.2E+02 0.0074 26.5 8.4 55 164-222 34-91 (175)
321 1ry6_A Internal kinesin; kines 25.2 45 0.0015 36.1 3.8 24 129-152 79-104 (360)
322 3hv2_A Response regulator/HD d 25.1 2.3E+02 0.0078 25.1 8.3 80 190-275 15-96 (153)
323 4b3f_X DNA-binding protein smu 25.0 1.6E+02 0.0056 34.0 9.0 51 422-472 215-265 (646)
324 1fuk_A Eukaryotic initiation f 24.6 2.5E+02 0.0086 25.7 8.7 55 164-222 30-87 (165)
325 1g3q_A MIND ATPase, cell divis 24.5 69 0.0023 31.4 4.8 33 137-172 7-39 (237)
326 2ykg_A Probable ATP-dependent 24.5 2.1E+02 0.0072 33.1 9.8 72 441-518 62-143 (696)
327 3i42_A Response regulator rece 24.2 2.8E+02 0.0096 23.4 8.5 84 190-279 4-91 (127)
328 3iwh_A Rhodanese-like domain p 24.2 54 0.0019 28.4 3.5 37 439-475 55-91 (103)
329 1rif_A DAR protein, DNA helica 23.8 2.8E+02 0.0095 27.9 9.5 35 441-475 158-196 (282)
330 1t1v_A SH3BGRL3, SH3 domain-bi 23.6 1.6E+02 0.0056 24.3 6.4 46 442-487 3-55 (93)
331 2oap_1 GSPE-2, type II secreti 23.5 74 0.0025 36.1 5.4 37 115-154 245-281 (511)
332 1k68_A Phytochrome response re 23.5 3E+02 0.01 23.4 8.6 39 236-275 54-95 (140)
333 2rdm_A Response regulator rece 23.4 1.5E+02 0.0052 25.3 6.5 26 442-467 7-32 (132)
334 1ixz_A ATP-dependent metallopr 23.4 1.1E+02 0.0037 30.5 6.1 22 134-155 50-71 (254)
335 3sxu_A DNA polymerase III subu 23.3 73 0.0025 29.9 4.4 81 424-522 23-106 (150)
336 1q57_A DNA primase/helicase; d 23.3 73 0.0025 35.8 5.3 58 123-182 232-289 (503)
337 3kht_A Response regulator; PSI 23.3 2.5E+02 0.0086 24.4 8.1 83 190-275 6-91 (144)
338 1hyq_A MIND, cell division inh 23.2 83 0.0028 31.5 5.3 32 137-171 7-38 (263)
339 3trf_A Shikimate kinase, SK; a 23.2 56 0.0019 30.7 3.7 25 133-157 5-29 (185)
340 2qr3_A Two-component system re 23.2 2.2E+02 0.0074 24.5 7.6 81 190-275 4-90 (140)
341 1wv9_A Rhodanese homolog TT165 23.1 54 0.0018 27.5 3.2 35 441-475 54-88 (94)
342 2qxy_A Response regulator; reg 22.9 1.9E+02 0.0066 25.1 7.2 79 190-275 5-85 (142)
343 1dbw_A Transcriptional regulat 22.8 1.6E+02 0.0056 25.0 6.6 28 441-468 4-31 (126)
344 3eod_A Protein HNR; response r 22.7 1.2E+02 0.0042 25.9 5.7 98 439-536 6-125 (130)
345 2lqo_A Putative glutaredoxin R 22.7 2.2E+02 0.0075 24.0 7.0 56 442-498 5-61 (92)
346 1pjr_A PCRA; DNA repair, DNA r 22.6 1E+02 0.0034 36.5 6.5 37 442-479 353-389 (724)
347 1gmx_A GLPE protein; transfera 22.3 91 0.0031 26.7 4.6 40 438-477 56-96 (108)
348 3n53_A Response regulator rece 22.2 3.7E+02 0.013 23.0 9.8 24 464-487 46-69 (140)
349 2rjn_A Response regulator rece 22.1 2.2E+02 0.0076 25.1 7.6 81 190-275 8-89 (154)
350 1cp2_A CP2, nitrogenase iron p 21.9 58 0.002 32.8 3.7 29 139-170 7-35 (269)
351 2rjn_A Response regulator rece 21.7 95 0.0032 27.8 4.9 62 439-508 6-68 (154)
352 3cg4_A Response regulator rece 21.7 2.4E+02 0.0081 24.4 7.6 80 190-275 8-91 (142)
353 3t8y_A CHEB, chemotaxis respon 21.6 2.5E+02 0.0087 25.3 8.0 80 190-275 26-108 (164)
354 2jtq_A Phage shock protein E; 21.6 1.3E+02 0.0043 24.5 5.2 37 438-475 39-76 (85)
355 2c95_A Adenylate kinase 1; tra 21.4 76 0.0026 29.9 4.3 25 133-157 9-33 (196)
356 2yxb_A Coenzyme B12-dependent 21.4 2.4E+02 0.0082 26.4 7.7 59 439-502 17-79 (161)
357 3f6p_A Transcriptional regulat 21.4 2.2E+02 0.0076 24.0 7.1 25 442-466 4-28 (120)
358 2oze_A ORF delta'; para, walke 21.3 65 0.0022 33.1 4.0 28 140-170 44-71 (298)
359 3kto_A Response regulator rece 20.9 83 0.0029 27.5 4.2 30 441-470 7-36 (136)
360 3end_A Light-independent proto 20.8 68 0.0023 33.2 4.1 29 139-170 47-75 (307)
361 3cz5_A Two-component response 20.8 3.6E+02 0.012 23.7 8.7 81 190-275 6-89 (153)
362 1qkk_A DCTD, C4-dicarboxylate 20.8 93 0.0032 27.9 4.6 61 440-508 3-64 (155)
363 3kht_A Response regulator; PSI 20.7 1.5E+02 0.005 26.0 5.9 28 440-467 5-32 (144)
364 2afh_E Nitrogenase iron protei 20.7 69 0.0024 32.8 4.1 29 139-170 8-36 (289)
365 1tmy_A CHEY protein, TMY; chem 20.6 1.3E+02 0.0046 25.2 5.4 14 521-534 105-118 (120)
366 2ph1_A Nucleotide-binding prot 20.6 88 0.003 31.5 4.8 32 137-171 23-54 (262)
367 3h5i_A Response regulator/sens 20.6 1.9E+02 0.0065 25.2 6.7 84 188-275 4-88 (140)
368 3vaa_A Shikimate kinase, SK; s 20.5 69 0.0024 30.8 3.8 25 133-157 25-49 (199)
369 2fsx_A RV0390, COG0607: rhodan 20.5 1.1E+02 0.0037 28.0 5.0 38 438-475 78-116 (148)
370 4akg_A Glutathione S-transfera 20.4 1.2E+02 0.0043 41.4 7.3 61 115-175 905-965 (2695)
371 3flh_A Uncharacterized protein 20.3 82 0.0028 27.9 4.0 38 439-476 70-109 (124)
372 2qxy_A Response regulator; reg 20.1 1.3E+02 0.0044 26.3 5.3 16 521-536 105-120 (142)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-85 Score=801.38 Aligned_cols=492 Identities=46% Similarity=0.778 Sum_probs=417.3
Q ss_pred ccccCCCcCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHH
Q 003311 102 KVTEQPTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 181 (832)
Q Consensus 102 ~~~~~P~~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~ 181 (832)
.+..+|+...+++|||||.+||+||+.++.++.+|||||+||+|||+|+|+++.+++......+|+|||||.+++.||.+
T Consensus 224 ~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~ 303 (800)
T 3mwy_W 224 KLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLD 303 (800)
T ss_dssp CCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHH
T ss_pred ccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHH
Confidence 34567888888999999999999999999999999999999999999999999999877777899999999999999999
Q ss_pred HHHhhCCCceEEEEcCChhHHHHHHHHHH--------hhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChh
Q 003311 182 EFSTWAPSIAAVVYDGRPDERKAMREEFF--------SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHE 253 (832)
Q Consensus 182 E~~k~~p~~~v~~~~g~~~~r~~~~~~~~--------~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~ 253 (832)
||.+|+|.+.+++|+|....+..+....+ .....++|+||||+++.++...+..+.|++|||||||++||..
T Consensus 304 E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~ 383 (800)
T 3mwy_W 304 TFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAE 383 (800)
T ss_dssp HHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSS
T ss_pred HHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCch
Confidence 99999999999999999988876654332 1235789999999999999999999999999999999999999
Q ss_pred hHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhh
Q 003311 254 CALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVI 333 (832)
Q Consensus 254 sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L 333 (832)
+++++++..+.+.+||+|||||++|++.|||+|++||.|+.|.....|.-.. ........+..|+.++
T Consensus 384 s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~------------~~~~~~~~~~~L~~~l 451 (800)
T 3mwy_W 384 SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN------------QDEEQEEYIHDLHRRI 451 (800)
T ss_dssp SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C------------CTTHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc------------cchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998766553111 1123445678899999
Q ss_pred hhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCC-CcchhHHHHHHHHHHhhCCCcccccccc
Q 003311 334 RPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQLRKCCNHPYLFVGEYN 412 (832)
Q Consensus 334 ~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~-~~~~~l~~~~~~LRk~cnhP~l~~~~~~ 412 (832)
+||++||++.++...||++.+.++.|+|++.|+.+|..+.......+..+. +....+.+++++||++|+||+++.....
T Consensus 452 ~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~ 531 (800)
T 3mwy_W 452 QPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEE 531 (800)
T ss_dssp GGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHH
T ss_pred hHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHH
Confidence 999999999999999999999999999999999999999887655544322 3345688999999999999999865211
Q ss_pred c-------------hhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHH
Q 003311 413 M-------------WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEER 479 (832)
Q Consensus 413 ~-------------~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR 479 (832)
. .....++..|+|+.+|.++|..+.+.|+|||||||++.++++|+++|..+|+++++++|+++..+|
T Consensus 532 ~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR 611 (800)
T 3mwy_W 532 RVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQR 611 (800)
T ss_dssp HHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHH
T ss_pred HHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHH
Confidence 1 112456778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHH
Q 003311 480 GTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVIL 559 (832)
Q Consensus 480 ~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il 559 (832)
+.++++|+.++++.++||+||+|||+||||+.|++||+||++|||+.+.||+|||||+||+++|.||+|++.+|+|++|+
T Consensus 612 ~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~ 691 (800)
T 3mwy_W 612 RISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVL 691 (800)
T ss_dssp HHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHH
T ss_pred HHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHH
Confidence 99999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcCCCCCC---HHHHHHHHHHHHHhcccCCCCC
Q 003311 560 ERAKQKMGIDAKVIQAGLFNTTST---AQDRREMLKEIMRRGTSSLGTD 605 (832)
Q Consensus 560 ~~~~~K~~l~~~vi~~g~~~~~~~---~~~~~~~l~~il~~~~~~~~~~ 605 (832)
+++.+|+.++..||+.|..+.... .......|.+||++|+..+..+
T Consensus 692 ~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~~~~~ 740 (800)
T 3mwy_W 692 ERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTA 740 (800)
T ss_dssp HHHHHHTTSCC----------------CCCCHHHHHHHHSSCSSSSCCS
T ss_pred HHHHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHHcchHhhhhc
Confidence 999999999999999887654321 0112345778889988776543
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8e-78 Score=718.78 Aligned_cols=466 Identities=33% Similarity=0.545 Sum_probs=396.2
Q ss_pred CCCchHHHHHHHHHHHHhh-----ccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCC----CCCEEEEeCCCchHHHHHH
Q 003311 112 GGELRAYQLEGLQWMLSLF-----NNNLNGILADEMGLGKTIQTIALIAYLLENKGV----TGPHVIVAPKAVLPNWINE 182 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~-----~~~~~gILaDemGlGKTiqaiali~~l~~~~~~----~~p~LIV~P~sll~qW~~E 182 (832)
...|||||.+|++||...+ .++.+|||||+||+|||+|+|+++..+....+. .+++|||||.+++.||.+|
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E 132 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNE 132 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHH
Confidence 3699999999999999865 466789999999999999999999998876532 3469999999999999999
Q ss_pred HHhhCCC-ceEEEEc-CChhHHHHHHHHHHhhc---CCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHH
Q 003311 183 FSTWAPS-IAAVVYD-GRPDERKAMREEFFSER---GRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALA 257 (832)
Q Consensus 183 ~~k~~p~-~~v~~~~-g~~~~r~~~~~~~~~~~---~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~ 257 (832)
|.+|+|. +.++.++ |....+......+.... ..++|+||||+++.++...+....|++|||||||++||..++.+
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~ 212 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTY 212 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHH
T ss_pred HHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHH
Confidence 9999875 5455544 55544433333333221 25789999999999988888889999999999999999999999
Q ss_pred HHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHH---HHHHHHHHHhhhh
Q 003311 258 KTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEE---QLLIIRRLHHVIR 334 (832)
Q Consensus 258 kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee---~~~~~~~L~~~L~ 334 (832)
+++..+.+.+||+|||||++|++.|||+|++|+.|++|++...|.++|..|+........+..+ ....+..|+.++.
T Consensus 213 ~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 292 (644)
T 1z3i_X 213 LALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVN 292 (644)
T ss_dssp HHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887655444443333 3345778999999
Q ss_pred hhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCC-CcchhHHHHHHHHHHhhCCCcccccccc-
Q 003311 335 PFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT-GKSKSLQNLSMQLRKCCNHPYLFVGEYN- 412 (832)
Q Consensus 335 pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~-~~~~~l~~~~~~LRk~cnhP~l~~~~~~- 412 (832)
||++||++.++...||++.+.++.|+||+.|+.+|+.+............ .........++.||++||||+++.....
T Consensus 293 ~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~ 372 (644)
T 1z3i_X 293 RCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLT 372 (644)
T ss_dssp HHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHH
T ss_pred HHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999876543221111 1234456677899999999998743110
Q ss_pred ---c-----------hh-hHHHHhhcchHHHHHHHHHhhhh-cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCH
Q 003311 413 ---M-----------WR-KEEIIRASGKFELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKT 476 (832)
Q Consensus 413 ---~-----------~~-~~~l~~~S~Kl~~L~~lL~~l~~-~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~ 476 (832)
. +. .......|+|+.+|..++..+.. .++|+||||+++.++++|+.+|...|+.++++||+++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~ 452 (644)
T 1z3i_X 373 GEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSI 452 (644)
T ss_dssp TCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCH
T ss_pred ccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCH
Confidence 0 00 00112458999999999998864 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHH
Q 003311 477 EERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEE 556 (832)
Q Consensus 477 ~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe 556 (832)
++|++++++|+.++...++||+||++||+||||+.|++||+||+||||..+.||+||+||+||+++|.||+|++.+|+||
T Consensus 453 ~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe 532 (644)
T 1z3i_X 453 KKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532 (644)
T ss_dssp HHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred HHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHH
Confidence 99999999999988777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCc
Q 003311 557 VILERAKQKMGIDAKVIQAGL 577 (832)
Q Consensus 557 ~Il~~~~~K~~l~~~vi~~g~ 577 (832)
+|++++..|..+...|++++.
T Consensus 533 ~i~~~~~~K~~l~~~v~~~~~ 553 (644)
T 1z3i_X 533 KILQRQAHKKALSSCVVDEEQ 553 (644)
T ss_dssp HHHHHHHHHHHTSCCCCSCSS
T ss_pred HHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999887754
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.7e-71 Score=642.23 Aligned_cols=442 Identities=31% Similarity=0.570 Sum_probs=384.7
Q ss_pred CCcCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhh
Q 003311 107 PTLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 186 (832)
Q Consensus 107 P~~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 186 (832)
|..+ ..+|+|||.+|+.||...+..+.+|||||+||+|||+++++++..+... +..+++|||||.+++.||.+||.+|
T Consensus 31 p~~~-~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 31 PYNI-KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-NELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CCSC-SSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-TCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred Chhh-hccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-CCCCCEEEEccHHHHHHHHHHHHHH
Confidence 4443 3699999999999999888888999999999999999999999888764 3456999999999999999999999
Q ss_pred CCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccc
Q 003311 187 APSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQ 266 (832)
Q Consensus 187 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~ 266 (832)
+|...+.+++|.... .....++|+||||+.+.++.. +....|++|||||||+++|..++.++++..+.+.
T Consensus 109 ~~~~~v~~~~g~~~~---------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~ 178 (500)
T 1z63_A 109 APHLRFAVFHEDRSK---------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSK 178 (500)
T ss_dssp CTTSCEEECSSSTTS---------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEE
T ss_pred CCCceEEEEecCchh---------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccC
Confidence 999999999887532 112578999999999988765 7788999999999999999999999999999999
Q ss_pred eEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhH--
Q 003311 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE-- 344 (832)
Q Consensus 267 ~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~d-- 344 (832)
++|+|||||++|++.|||++++|+.|++|++...|.+.|..|+.... ......|+.++.|+++||++.+
T Consensus 179 ~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~---------~~~~~~l~~~l~~~~lrr~k~~~~ 249 (500)
T 1z63_A 179 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD---------NMAKEELKAIISPFILRRTKYDKA 249 (500)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC---------HHHHHHHHHHHTTTEECCCTTCHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc---------HHHHHHHHHHHhhHeeeecccccc
Confidence 99999999999999999999999999999999999999988765421 2245678999999999999976
Q ss_pred HhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCC--cchhHHHHHHHHHHhhCCCccccccccchhhHHHHhh
Q 003311 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTG--KSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRA 422 (832)
Q Consensus 345 v~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~--~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~ 422 (832)
+...||++.+..+.|+|++.|+.+|+.+.......+....+ ....+...++.||++|+||++...... ....
T Consensus 250 ~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~------~~~~ 323 (500)
T 1z63_A 250 IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQ------SVRR 323 (500)
T ss_dssp HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCC------CSTT
T ss_pred hhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccc------hhhc
Confidence 66789999999999999999999999988765443332221 223456677899999999998764321 2356
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
++|+..+.+++..+...|+|+||||+++.+++.|..+|... |+.+..++|+++..+|.+++++|+.++. +.++|+||+
T Consensus 324 s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~-~~vil~st~ 402 (500)
T 1z63_A 324 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPS-VKFIVLSVK 402 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTT-CCCCEEECC
T ss_pred chhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCC-CCEEEEecc
Confidence 89999999999999999999999999999999999999875 9999999999999999999999998633 447899999
Q ss_pred ccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 003311 502 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG 576 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~~g 576 (832)
++|+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++.+|+|++|++++..|..+.+.+++++
T Consensus 403 ~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~ 477 (500)
T 1z63_A 403 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 477 (500)
T ss_dssp CC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGST
T ss_pred cccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998765
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=7.3e-51 Score=505.13 Aligned_cols=434 Identities=19% Similarity=0.238 Sum_probs=329.9
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCce
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 191 (832)
..+|+|||.+++.|++... +.++||||+||+|||+++++++..++..+ ..+++|||||.+++.||..||.+|+ ++.
T Consensus 151 ~~~LrpyQ~eav~~~l~~~--~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~ 226 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRH--APRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPETLQHQWLVEMLRRF-NLR 226 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSS--SCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCTTTHHHHHHHHHHHS-CCC
T ss_pred CCCCcHHHHHHHHHHHHhc--CCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEeCHHHHHHHHHHHHHHh-CCC
Confidence 3699999999999998733 56789999999999999999998887654 3568999999999999999999988 577
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH---HHHhhcCceEEEEeCCcccCChhhH---HHHHHHcc--
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR---QYLKKVQWIYMIVDEGHRLKNHECA---LAKTISGY-- 263 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~---~~L~~~~w~~vIiDEaHriKN~~sk---~~kal~~l-- 263 (832)
+.+++|....... .........++|+|+||+.+.++. ..+....|++|||||||+++|..+. .++++..+
T Consensus 227 v~v~~~~~~~~~~--~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~ 304 (968)
T 3dmq_A 227 FALFDDERYAEAQ--HDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE 304 (968)
T ss_dssp CEECCHHHHHHHH--HTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT
T ss_pred EEEEccchhhhhh--hhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh
Confidence 7777764432211 111122246799999999998753 4567779999999999999987654 47777766
Q ss_pred ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccc---------c------Cc----ccC-------
Q 003311 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKD---------R------GQ----VAL------- 317 (832)
Q Consensus 264 ~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~---------~------~~----~~~------- 317 (832)
.+.++|+|||||++|++.|+|++++|+.|.+|.+...|..++...... . .. ..+
T Consensus 305 ~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~ 384 (968)
T 3dmq_A 305 HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEP 384 (968)
T ss_dssp TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSST
T ss_pred cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHH
Confidence 678899999999999999999999999999999999888765321100 0 00 000
Q ss_pred -----------ChHHHHHHHHHHHhh--hhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCC
Q 003311 318 -----------TDEEQLLIIRRLHHV--IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGT 384 (832)
Q Consensus 318 -----------~~ee~~~~~~~L~~~--L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~ 384 (832)
........+..+... ...+++|+++..+. .+|.+....+.+++++.+..+|.............
T Consensus 385 l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 461 (968)
T 3dmq_A 385 LLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE-- 461 (968)
T ss_dssp TGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG--
T ss_pred HHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH--
Confidence 000111111111111 13456666666664 68999999999999999999987654432211111
Q ss_pred CcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHh-C
Q 003311 385 GKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL-N 463 (832)
Q Consensus 385 ~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~-~ 463 (832)
. ....|.+|......... .....+..+.|+..|.+++.. ..+.++||||++..+++.|...|.. .
T Consensus 462 --~---------~~~~~l~pe~~~~~l~~-~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~ 527 (968)
T 3dmq_A 462 --D---------RARDMLYPERIYQEFEG-DNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLRERE 527 (968)
T ss_dssp --G---------GTHHHHCSGGGTTTTTS-SSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTT
T ss_pred --H---------HHhhhcChHHHHHHhhh-hhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHc
Confidence 0 00112233222221110 001123567899999999987 5788999999999999999999995 5
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcE
Q 003311 464 DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 543 (832)
Q Consensus 464 g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V 543 (832)
|+++..+||+++..+|..+++.|+.+.+.+ .+|++|+++++|||++.|++||+||+||||..+.|++||+||+||++.|
T Consensus 528 g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~-~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v 606 (968)
T 3dmq_A 528 GIRAAVFHEGMSIIERDRAAAWFAEEDTGA-QVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDI 606 (968)
T ss_dssp CCCEEEECTTSCTTHHHHHHHHHHSTTSSC-EEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCC
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCcc-cEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceE
Confidence 999999999999999999999999976333 3688999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHH
Q 003311 544 RVFVLVSVGSIEEVILERAKQKMGID 569 (832)
Q Consensus 544 ~V~rLit~~siEe~Il~~~~~K~~l~ 569 (832)
.||++++.+|+|++|+..+.+|..+.
T Consensus 607 ~v~~~~~~~t~ee~i~~~~~~k~~~~ 632 (968)
T 3dmq_A 607 QIHVPYLEKTAQSVLVRWYHEGLDAF 632 (968)
T ss_dssp EEEEEEETTSHHHHHHHHHHHTTCCS
T ss_pred EEEEecCCChHHHHHHHHHHhCCCce
Confidence 99999999999999999998887653
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-46 Score=429.36 Aligned_cols=430 Identities=17% Similarity=0.193 Sum_probs=292.2
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC--CC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--PS 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~--p~ 189 (832)
.+|+|||.+++.|++. + ++||+++||+|||+++++++..++. ...+++|||||. +++.||.++|.+|+ |.
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 4899999999999886 4 8999999999999999999887766 235689999997 89999999999998 56
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH--HHhhcCceEEEEeCCcccCChhh--HHHHHH-Hccc
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ--YLKKVQWIYMIVDEGHRLKNHEC--ALAKTI-SGYQ 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~--~L~~~~w~~vIiDEaHriKN~~s--k~~kal-~~l~ 264 (832)
..+..++|........ ... ..++|+|+||+.+..... .+....|++|||||||++++... .+...+ ....
T Consensus 81 ~~v~~~~g~~~~~~~~--~~~---~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~ 155 (494)
T 1wp9_A 81 EKIVALTGEKSPEERS--KAW---ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAK 155 (494)
T ss_dssp GGEEEECSCSCHHHHH--HHH---HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCS
T ss_pred hheEEeeCCcchhhhh--hhc---cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCC
Confidence 6888888876543221 111 357899999999987654 34456899999999999987432 222222 2346
Q ss_pred cceEEEeeccCCCCCHHHHHHHHhccCCCCC---CChHHH-HHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 003311 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIF---NSVENF-EEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340 (832)
Q Consensus 265 ~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f---~~~~~F-~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR 340 (832)
..++|+|||||. ++..+++.++.++.+... .....+ ..++.............. ....+...+.+++.++
T Consensus 156 ~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 229 (494)
T 1wp9_A 156 NPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPE-----IYKEVRKLLREMLRDA 229 (494)
T ss_dssp SCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCH-----HHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcH-----HHHHHHHHHHHHHHHH
Confidence 789999999999 777788888777755432 211111 111111110001111222 2445667778888888
Q ss_pred hHhHHhhcCCCCeEEEEEcCCCHHH-----HHHHHHHHHhcccccc-----------------cCCCcchhHHHHHHHHH
Q 003311 341 KKDEVEKYLPGKSQVILKCDMSAWQ-----KVYYQQVTDVGRVGLD-----------------TGTGKSKSLQNLSMQLR 398 (832)
Q Consensus 341 ~k~dv~~~LP~k~e~~v~~~ms~~Q-----~~lY~~i~~~~~~~~~-----------------~~~~~~~~l~~~~~~LR 398 (832)
.+......++.... ..++... ..++..+......... ........+...+..+.
T Consensus 230 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (494)
T 1wp9_A 230 LKPLAETGLLESSS----PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLY 305 (494)
T ss_dssp HHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccccC----CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Confidence 87665544332211 1122221 1122211110000000 00001112333334444
Q ss_pred HhhCCCccccccc---cc--hhh-------HHHHhhcchHHHHHHHHHhhh--hcCCeEEEEecchhHHHHHHHHHHhCC
Q 003311 399 KCCNHPYLFVGEY---NM--WRK-------EEIIRASGKFELLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYLKLND 464 (832)
Q Consensus 399 k~cnhP~l~~~~~---~~--~~~-------~~l~~~S~Kl~~L~~lL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~g 464 (832)
..|.|+....... .. ... ......++|+..|.++|..+. ..++++||||++..+++.+..+|...|
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~ 385 (494)
T 1wp9_A 306 EEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG 385 (494)
T ss_dssp HHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT
T ss_pred HhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcC
Confidence 4444422111000 00 000 001146789999999999876 578999999999999999999999999
Q ss_pred CeEEEEcC--------CCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccc
Q 003311 465 FKFLRLDG--------STKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHR 536 (832)
Q Consensus 465 ~~~~rldG--------~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahR 536 (832)
+.+..++| +++..+|.++++.|+.+... +|++|.++|+||||+.|++||+||++|||..+.||+||+||
T Consensus 386 ~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R 462 (494)
T 1wp9_A 386 IKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR 462 (494)
T ss_dssp CCEEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCS
T ss_pred CCcEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccC
Confidence 99999999 89999999999999987755 69999999999999999999999999999999999999999
Q ss_pred cCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 003311 537 IGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 570 (832)
Q Consensus 537 iGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~ 570 (832)
.|| +.+|+|++.+|+|++++.++..|..+..
T Consensus 463 ~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 463 HMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp CCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred CCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 998 8999999999999999999998876643
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.7e-43 Score=405.40 Aligned_cols=375 Identities=18% Similarity=0.203 Sum_probs=267.5
Q ss_pred CCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC
Q 003311 110 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 188 (832)
Q Consensus 110 l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 188 (832)
..+.+|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||. +++.||.++|.+|
T Consensus 89 ~~~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~-- 156 (472)
T 2fwr_A 89 DAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-- 156 (472)
T ss_dssp CCCCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--
T ss_pred cCCCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--
Confidence 3457999999999998775 5679999999999999998887754 4589999998 8999999999995
Q ss_pred Cce-EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccce
Q 003311 189 SIA-AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQR 267 (832)
Q Consensus 189 ~~~-v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~ 267 (832)
+.. +.+++|... ...+|+|+||+.+......+. ..|++|||||||++.+.... ..+..+.+.+
T Consensus 157 ~~~~v~~~~g~~~-------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~ 220 (472)
T 2fwr_A 157 GEEYVGEFSGRIK-------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSIAPF 220 (472)
T ss_dssp CGGGEEEBSSSCB-------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCCCSE
T ss_pred CCcceEEECCCcC-------------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcCCCe
Confidence 455 788887643 356899999999988766553 35999999999999987644 3557778899
Q ss_pred EEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHhh
Q 003311 268 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEK 347 (832)
Q Consensus 268 rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~~ 347 (832)
+|+|||||.+++..+ ..|..++.|.+.++...++..
T Consensus 221 ~l~lSATp~~~~~~~--------------------------------------------~~l~~~~~~~~~~~~~~~l~~ 256 (472)
T 2fwr_A 221 RLGLTATFEREDGRH--------------------------------------------EILKEVVGGKVFELFPDSLAG 256 (472)
T ss_dssp EEEEESCCCCTTSGG--------------------------------------------GSHHHHTCCEEEECCHHHHTS
T ss_pred EEEEecCccCCCCHH--------------------------------------------HHHHHHhCCeEeecCHHHHhc
Confidence 999999998654221 012233445555555555533
Q ss_pred -cCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCc---chhHHHHHHHHHHhhCCCccccccc-cchhhHHHHhh
Q 003311 348 -YLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGK---SKSLQNLSMQLRKCCNHPYLFVGEY-NMWRKEEIIRA 422 (832)
Q Consensus 348 -~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~---~~~l~~~~~~LRk~cnhP~l~~~~~-~~~~~~~l~~~ 422 (832)
.+++.....+.+++++.+...|..+.......+...... ...+...+ ...+..+....... ...........
T Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (472)
T 2fwr_A 257 KHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIV---MASGYDERAYEALRAWEEARRIAFNS 333 (472)
T ss_dssp CCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTT---TTTCCSSSSSTTTHHHHHHHHHHHSC
T ss_pred CcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHH---HHhccCHHHHHHHHHHHHHHHHhhcC
Confidence 377777778899999999998876654332222111000 00000000 00000000000000 00001112345
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
+.|+..|.+++.. ..++++||||++...++.+...|. +..++|+++..+|.++++.|+++... +|++|.+
T Consensus 334 ~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~---vLv~T~~ 403 (472)
T 2fwr_A 334 KNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR---AIVSSQV 403 (472)
T ss_dssp SHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS---BCBCSSC
T ss_pred hHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCC---EEEEcCc
Confidence 7799999999987 468999999999999999999884 45689999999999999999987765 6899999
Q ss_pred cccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCc-CcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 003311 503 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQK-KEVRVFVLVSVGSIEEVILERAKQKMGID 569 (832)
Q Consensus 503 gg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~-k~V~V~rLit~~siEe~Il~~~~~K~~l~ 569 (832)
+++|||++.+++||+||++|||..+.|++||++|.||. +.|.||+|++.+|+|+++..+.+.|.+++
T Consensus 404 ~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 404 LDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp CCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred hhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999998 78999999999999999999988776653
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=3.6e-42 Score=368.27 Aligned_cols=234 Identities=28% Similarity=0.445 Sum_probs=180.8
Q ss_pred hhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCC--cchhHHHHHHHHHHhhCCCccccccccc
Q 003311 336 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTG--KSKSLQNLSMQLRKCCNHPYLFVGEYNM 413 (832)
Q Consensus 336 fllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~--~~~~l~~~~~~LRk~cnhP~l~~~~~~~ 413 (832)
--+||+|++|..+||++.+.+++|+||+.|+.+|+.+.......+....+ ....+.+.+++||++|+||+++....
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~-- 89 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE-- 89 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC--
T ss_pred ccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCc--
Confidence 35799999999999999999999999999999999998765444432221 12346778899999999999986321
Q ss_pred hhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 003311 414 WRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN-DFKFLRLDGSTKTEERGTLLKQFNAPDSP 492 (832)
Q Consensus 414 ~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-g~~~~rldG~ts~~eR~~~i~~Fn~~~~~ 492 (832)
.+...++|+..|.++|..+...|+|+||||+++.++++|+.+|... |+.+.+++|+++..+|..++++|+.+..
T Consensus 90 ----~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~- 164 (271)
T 1z5z_A 90 ----QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPS- 164 (271)
T ss_dssp ----CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTT-
T ss_pred ----cccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCC-
Confidence 1235789999999999999989999999999999999999999885 9999999999999999999999998633
Q ss_pred ceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 003311 493 YFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKV 572 (832)
Q Consensus 493 ~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~v 572 (832)
+.|||+||++||+||||+.|++||+||+||||..+.||+||+||+||+++|.||+|++.+|+||+|++++..|..+.+.+
T Consensus 165 ~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~ 244 (271)
T 1z5z_A 165 VKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDI 244 (271)
T ss_dssp CCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTG
T ss_pred CCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC
Q 003311 573 IQAG 576 (832)
Q Consensus 573 i~~g 576 (832)
++++
T Consensus 245 ~~~~ 248 (271)
T 1z5z_A 245 ISSG 248 (271)
T ss_dssp GGGT
T ss_pred HccC
Confidence 9875
No 8
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5.3e-39 Score=393.01 Aligned_cols=439 Identities=16% Similarity=0.187 Sum_probs=226.6
Q ss_pred CCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCC--CCCEEEEeCC-CchHHHHHHHHhhC
Q 003311 111 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--TGPHVIVAPK-AVLPNWINEFSTWA 187 (832)
Q Consensus 111 ~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~--~~p~LIV~P~-sll~qW~~E~~k~~ 187 (832)
...+|+|||.+++.+++. +.++|++++||+|||++++..+..++..... .+++|||||. .++.||..+|.+++
T Consensus 245 g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ---CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 346999999999998875 7889999999999999998888777665422 5689999996 68999999999998
Q ss_pred C--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--H-hhcCceEEEEeCCcccCChhhHHHHHHHc
Q 003311 188 P--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--L-KKVQWIYMIVDEGHRLKNHECALAKTISG 262 (832)
Q Consensus 188 p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L-~~~~w~~vIiDEaHriKN~~sk~~kal~~ 262 (832)
+ ++.+..++|............ ..++|+|+||+.+.+.... + ....|++|||||||++.+... ....+..
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~ 395 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTR 395 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHH
Confidence 7 788888888774433222111 4689999999999875432 2 233579999999999988654 3332222
Q ss_pred c---------ccceEEEeeccCCCCCHHHHHHHHhc-------cCCCC----CCChHHHHHHhcccccccCcccCChHHH
Q 003311 263 Y---------QIQRRLLLTGTPIQNSLQELWSLLNF-------LLPTI----FNSVENFEEWFNAPFKDRGQVALTDEEQ 322 (832)
Q Consensus 263 l---------~~~~rllLTGTPlqN~l~EL~sLl~f-------L~p~~----f~~~~~F~~~f~~~~~~~~~~~~~~ee~ 322 (832)
+ ...++++|||||.+++..+++.+++. +++.. ......+..++..|........ ...
T Consensus 396 ~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~--~~~- 472 (797)
T 4a2q_A 396 YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVK--RRI- 472 (797)
T ss_dssp HHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECC--CCS-
T ss_pred HHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecC--CCC-
Confidence 2 23679999999987654443333222 12111 1112223333322211100000 000
Q ss_pred HHHHHHHHhhhhhhhhhhhHhHHhhcCC--CCeEEEEEcCCCHHHHH-HHHHHHHhcccc-cccCCCc---chhHHHHHH
Q 003311 323 LLIIRRLHHVIRPFILRRKKDEVEKYLP--GKSQVILKCDMSAWQKV-YYQQVTDVGRVG-LDTGTGK---SKSLQNLSM 395 (832)
Q Consensus 323 ~~~~~~L~~~L~pfllRR~k~dv~~~LP--~k~e~~v~~~ms~~Q~~-lY~~i~~~~~~~-~~~~~~~---~~~l~~~~~ 395 (832)
...+...+..+ +.....-....++ .... .....+...... +...+....... +...... ...+.....
T Consensus 473 ---~~~~~~~~~~l-~~~i~~~~~~~~~l~~l~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (797)
T 4a2q_A 473 ---HNPFAAIISNL-MSETEALMRTIYSVDTLSQ-NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTE 547 (797)
T ss_dssp ---CCHHHHHHHHH-HHHHHHHHHHC-------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHH-HHHHHHHHHHHHhhHHhhh-hccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 00000000000 0111111110000 0000 000000000000 000000000000 0000000 000111111
Q ss_pred HHHHhhCCCccccccccch--------------------hhHHH------------------HhhcchHHHHHHHHHhhh
Q 003311 396 QLRKCCNHPYLFVGEYNMW--------------------RKEEI------------------IRASGKFELLDRLLPKLR 437 (832)
Q Consensus 396 ~LRk~cnhP~l~~~~~~~~--------------------~~~~l------------------~~~S~Kl~~L~~lL~~l~ 437 (832)
.|++... ........... ....+ ...++|+..|.++|....
T Consensus 548 ~l~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (797)
T 4a2q_A 548 HLRKYND-ALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (797)
T ss_dssp HHHHHHH-HHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHh
Confidence 1111100 00000000000 00000 013789999999998754
Q ss_pred --hcCCeEEEEecchhHHHHHHHHHHh------------CCCeEEEEcCCCCHHHHHHHHHhhcC-CCCCceEEEEeccc
Q 003311 438 --KSGHRVLLFSQMTRLMDILEIYLKL------------NDFKFLRLDGSTKTEERGTLLKQFNA-PDSPYFMFLLSTRA 502 (832)
Q Consensus 438 --~~g~kvLIFsq~~~~ldiL~~~L~~------------~g~~~~rldG~ts~~eR~~~i~~Fn~-~~~~~~v~LlSt~a 502 (832)
..++|+||||+++.+++.|.++|.. .|..+..+||+++..+|..++++|+. +... +||+|++
T Consensus 627 ~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~---vLVaT~~ 703 (797)
T 4a2q_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSV 703 (797)
T ss_dssp HHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS---EEEEECC
T ss_pred ccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce---EEEEcCc
Confidence 5679999999999999999999976 36677788899999999999999998 6655 7999999
Q ss_pred cccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q 003311 503 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 575 (832)
Q Consensus 503 gg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~~ 575 (832)
+|+|||++.|++||+||+||||..++||+|| + +.+++.+|.|++.++++++ ......|..+...++..
T Consensus 704 ~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-G---R~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~ 771 (797)
T 4a2q_A 704 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G---RAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 771 (797)
T ss_dssp -------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-C---CCCCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 4 4588999999999999998 66677777777777654
No 9
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7.3e-39 Score=374.24 Aligned_cols=436 Identities=17% Similarity=0.220 Sum_probs=218.3
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCC--CCCEEEEeCC-CchHHHHHHHHhhCC-
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--TGPHVIVAPK-AVLPNWINEFSTWAP- 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~--~~p~LIV~P~-sll~qW~~E~~k~~p- 188 (832)
.+|+|||.+++.+++. +.++|++++||+|||++++..+...+..... .+++|||||. .++.||.++|.++++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5899999999999875 7889999999999999998888777665332 5689999998 899999999999987
Q ss_pred -CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--H-hhcCceEEEEeCCcccCChhhHHHHHHHcc-
Q 003311 189 -SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--L-KKVQWIYMIVDEGHRLKNHECALAKTISGY- 263 (832)
Q Consensus 189 -~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L-~~~~w~~vIiDEaHriKN~~sk~~kal~~l- 263 (832)
++.+..++|............ ..++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~ 156 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 156 (556)
T ss_dssp GTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHH
Confidence 678888888764332222111 3578999999999875533 2 234689999999999987654 22222222
Q ss_pred --------ccceEEEeeccCCCCCHHHHH-------HHHhccCCCCCC----ChHHHHHHhcccccccCcccCChHHHHH
Q 003311 264 --------QIQRRLLLTGTPIQNSLQELW-------SLLNFLLPTIFN----SVENFEEWFNAPFKDRGQVALTDEEQLL 324 (832)
Q Consensus 264 --------~~~~rllLTGTPlqN~l~EL~-------sLl~fL~p~~f~----~~~~F~~~f~~~~~~~~~~~~~~ee~~~ 324 (832)
...++++|||||.+++..++. .+...+.+..+. ....+..++..|........ ...
T Consensus 157 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--- 231 (556)
T 4a2p_A 157 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVK--RRI--- 231 (556)
T ss_dssp HHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECC--CCS---
T ss_pred HhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcC--CCc---
Confidence 236799999999887643333 222333322111 12222222222111000000 000
Q ss_pred HHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHH-Hhc---cc-ccccCCCc---chhHHHHHHH
Q 003311 325 IIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVT-DVG---RV-GLDTGTGK---SKSLQNLSMQ 396 (832)
Q Consensus 325 ~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~-~~~---~~-~~~~~~~~---~~~l~~~~~~ 396 (832)
...+...+..++ ..........++ .........+......|.... ... .. .+...... ...+......
T Consensus 232 -~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (556)
T 4a2p_A 232 -HNPFAAIISNLM-SETEALMRTIYS--VDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEH 307 (556)
T ss_dssp -CCHHHHHHHHHH-HHHHHHHHHHCC-----------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHH-HHHHHHHHHHhh--hhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 000000000000 000000000000 000000000000000010000 000 00 00000000 0001111111
Q ss_pred HHHhhCCCccccccccch--------------------hhHHHH------------------hhcchHHHHHHHHHhhh-
Q 003311 397 LRKCCNHPYLFVGEYNMW--------------------RKEEII------------------RASGKFELLDRLLPKLR- 437 (832)
Q Consensus 397 LRk~cnhP~l~~~~~~~~--------------------~~~~l~------------------~~S~Kl~~L~~lL~~l~- 437 (832)
|++. ++........... ....+. ..++|+..|.++|....
T Consensus 308 l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~ 386 (556)
T 4a2p_A 308 LRKY-NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR 386 (556)
T ss_dssp HHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhc
Confidence 1111 0000000000000 000000 13789999999998776
Q ss_pred -hcCCeEEEEecchhHHHHHHHHHHhC------------CCeEEEEcCCCCHHHHHHHHHhhcC-CCCCceEEEEecccc
Q 003311 438 -KSGHRVLLFSQMTRLMDILEIYLKLN------------DFKFLRLDGSTKTEERGTLLKQFNA-PDSPYFMFLLSTRAG 503 (832)
Q Consensus 438 -~~g~kvLIFsq~~~~ldiL~~~L~~~------------g~~~~rldG~ts~~eR~~~i~~Fn~-~~~~~~v~LlSt~ag 503 (832)
..++|+||||+++.+++.|..+|... |..+..+||+++.++|..++++|+. +... +|++|+++
T Consensus 387 ~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~~ 463 (556)
T 4a2p_A 387 YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSVA 463 (556)
T ss_dssp HCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CC---EEEEEC--
T ss_pred CCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceE---EEEEcCch
Confidence 67899999999999999999999765 5666677788999999999999998 6655 78999999
Q ss_pred ccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q 003311 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 575 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~~ 575 (832)
|+|||++.|++||+||+||||..|.||+|| |+.+++.+|.|++.++++++ ......|..+...++..
T Consensus 464 ~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~ 530 (556)
T 4a2p_A 464 DEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 530 (556)
T ss_dssp ---------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 45578999999999999988 55666776666666543
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=6.2e-39 Score=397.56 Aligned_cols=436 Identities=16% Similarity=0.190 Sum_probs=227.0
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC--CCCCEEEEeCC-CchHHHHHHHHhhCC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG--VTGPHVIVAPK-AVLPNWINEFSTWAP 188 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~--~~~p~LIV~P~-sll~qW~~E~~k~~p 188 (832)
..+|+|||.+++.+++. +.++|++++||+|||++++..+..++.... ..+++|||||. .++.||..+|.++++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 46999999999999975 788999999999999998887766655432 15689999996 689999999999986
Q ss_pred --CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--H-hhcCceEEEEeCCcccCChhhHHHHHHHcc
Q 003311 189 --SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--L-KKVQWIYMIVDEGHRLKNHECALAKTISGY 263 (832)
Q Consensus 189 --~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L-~~~~w~~vIiDEaHriKN~~sk~~kal~~l 263 (832)
++.+.+++|............ ..++|+|+||+.+.+.... + ....|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~ 396 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRY 396 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHH
Confidence 688888888764433221111 3578999999999876532 1 223589999999999988654 33333222
Q ss_pred ---------ccceEEEeeccCCCCCHHHHHHHHhcc-------CCCC----CCChHHHHHHhcccccccCcccCChHHHH
Q 003311 264 ---------QIQRRLLLTGTPIQNSLQELWSLLNFL-------LPTI----FNSVENFEEWFNAPFKDRGQVALTDEEQL 323 (832)
Q Consensus 264 ---------~~~~rllLTGTPlqN~l~EL~sLl~fL-------~p~~----f~~~~~F~~~f~~~~~~~~~~~~~~ee~~ 323 (832)
...++++|||||.+++..+++.+++.+ .+.. ......+..++..|........ ...
T Consensus 397 ~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~--~~~-- 472 (936)
T 4a2w_A 397 LEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVK--RRI-- 472 (936)
T ss_dssp HHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECC--CCS--
T ss_pred HHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecc--ccc--
Confidence 236799999999887654444433322 1111 1112222222222211100000 000
Q ss_pred HHHHHHHhhhhhhhhhhhHhHHhhcCCCC-eEEEEEcCCCHHHHHHHHHHH-H---hcccc-cccCCCc---chhHHHHH
Q 003311 324 LIIRRLHHVIRPFILRRKKDEVEKYLPGK-SQVILKCDMSAWQKVYYQQVT-D---VGRVG-LDTGTGK---SKSLQNLS 394 (832)
Q Consensus 324 ~~~~~L~~~L~pfllRR~k~dv~~~LP~k-~e~~v~~~ms~~Q~~lY~~i~-~---~~~~~-~~~~~~~---~~~l~~~~ 394 (832)
...+...+..++ .....-....+.-. ........+.. ..|.... . ..... +...... ...+....
T Consensus 473 --~~~~~~~l~~l~-~~i~~~~~~~l~~~~l~~~~~~~~g~---~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~ 546 (936)
T 4a2w_A 473 --HNPFAAIISNLM-SETEALMRTIAYVDTLSQNSKKDFGT---QNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (936)
T ss_dssp --CCHHHHHHHHHH-HHHHHHHHHC------------CCSS---HHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred --CcHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccccccch---HHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 000001111100 11100000000000 00000000000 0011100 0 00000 0000000 00000011
Q ss_pred HHHHHhhCCCccccccccc--------------------hhhHHHH------------------hhcchHHHHHHHHHhh
Q 003311 395 MQLRKCCNHPYLFVGEYNM--------------------WRKEEII------------------RASGKFELLDRLLPKL 436 (832)
Q Consensus 395 ~~LRk~cnhP~l~~~~~~~--------------------~~~~~l~------------------~~S~Kl~~L~~lL~~l 436 (832)
..+++. ++.......... .....+. ..++|+..|.++|...
T Consensus 547 ~~l~~~-~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~ 625 (936)
T 4a2w_A 547 EHLRKY-NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA 625 (936)
T ss_dssp HHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Confidence 111111 000000000000 0000000 1478999999999886
Q ss_pred h--hcCCeEEEEecchhHHHHHHHHHHhC------------CCeEEEEcCCCCHHHHHHHHHhhcC-CCCCceEEEEecc
Q 003311 437 R--KSGHRVLLFSQMTRLMDILEIYLKLN------------DFKFLRLDGSTKTEERGTLLKQFNA-PDSPYFMFLLSTR 501 (832)
Q Consensus 437 ~--~~g~kvLIFsq~~~~ldiL~~~L~~~------------g~~~~rldG~ts~~eR~~~i~~Fn~-~~~~~~v~LlSt~ 501 (832)
. ..++|+||||+++.+++.|.++|... |..+..+||+++..+|.+++++|+. +... +||+|+
T Consensus 626 ~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~---VLVaT~ 702 (936)
T 4a2w_A 626 YRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATS 702 (936)
T ss_dssp TTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCS---EEEEEC
T ss_pred hccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCee---EEEEeC
Confidence 5 56899999999999999999999876 6666777888999999999999998 6655 799999
Q ss_pred ccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q 003311 502 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 575 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi~~ 575 (832)
++|+|||++.|++||+||+||||..++||+|| |+.+++.||.|++.++++++.+ ....|..+...++..
T Consensus 703 ~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 703 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp C------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred chhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 5567889999999999999866 666676777776654
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.3e-38 Score=371.30 Aligned_cols=433 Identities=18% Similarity=0.203 Sum_probs=244.9
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCC--CCCEEEEeCC-CchHHHHHHHHhhCC-
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--TGPHVIVAPK-AVLPNWINEFSTWAP- 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~--~~p~LIV~P~-sll~qW~~E~~k~~p- 188 (832)
.+|+|||.+++.+++. +.++|++++||+|||++++..+...+..... .+++|||||. .++.||.++|.++++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5899999999999875 7889999999999999998888776665332 5689999998 899999999999976
Q ss_pred -CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--H-hhcCceEEEEeCCcccCChhhHHHHHHHcc-
Q 003311 189 -SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--L-KKVQWIYMIVDEGHRLKNHECALAKTISGY- 263 (832)
Q Consensus 189 -~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L-~~~~w~~vIiDEaHriKN~~sk~~kal~~l- 263 (832)
++.+..+.|............ ..++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~ 153 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYL 153 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHH
Confidence 678888888764332221111 3578999999999876543 2 234689999999999988654 22222222
Q ss_pred ---------ccceEEEeeccCCCCC-------HHHHHHHHhccCCCCCC----ChHHHHHHhcccccccCccc--CChHH
Q 003311 264 ---------QIQRRLLLTGTPIQNS-------LQELWSLLNFLLPTIFN----SVENFEEWFNAPFKDRGQVA--LTDEE 321 (832)
Q Consensus 264 ---------~~~~rllLTGTPlqN~-------l~EL~sLl~fL~p~~f~----~~~~F~~~f~~~~~~~~~~~--~~~ee 321 (832)
...++++|||||.+++ +..+..+...+.+..+. ....+..++..|........ .....
T Consensus 154 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T 3tbk_A 154 DHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTF 233 (555)
T ss_dssp HHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHH
T ss_pred HhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChH
Confidence 2357999999999877 33344444455433221 23344444443322211111 11111
Q ss_pred ---HHHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHH-HHHHHHHhcccccccCCCc-----chhHHH
Q 003311 322 ---QLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKV-YYQQVTDVGRVGLDTGTGK-----SKSLQN 392 (832)
Q Consensus 322 ---~~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~-lY~~i~~~~~~~~~~~~~~-----~~~l~~ 392 (832)
.......++.++..++-. + ..+. .++. ..+...... +...+...... ....... ...+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~-l-~~~~-~~~~-------~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 302 (555)
T 3tbk_A 234 KCIISQLMKETEKLAKDVSEE-L-GKLF-QIQN-------REFGTQKYEQWIVGVHKACSV-FQMADKEEESRVCKALFL 302 (555)
T ss_dssp HHHHHHHHHHHHHHHHTSCHH-H-HGGG-GCCS-------CCSSSHHHHHHHHHHHHHHHT-CCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-h-hhhh-hccc-------ccccchhhhHHHHHHHHHhhh-hhccchhhHHHHHHHHHH
Confidence 111222333333332211 0 0010 1111 011111000 00010000000 0000000 000000
Q ss_pred HHHHHHHh-------------------------hCCCcccccccc---ch--hhHH-------HHhhcchHHHHHHHHHh
Q 003311 393 LSMQLRKC-------------------------CNHPYLFVGEYN---MW--RKEE-------IIRASGKFELLDRLLPK 435 (832)
Q Consensus 393 ~~~~LRk~-------------------------cnhP~l~~~~~~---~~--~~~~-------l~~~S~Kl~~L~~lL~~ 435 (832)
....|++. +.+..+...... .+ .... ....++|+..|.++|..
T Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 382 (555)
T 3tbk_A 303 YTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQE 382 (555)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHH
Confidence 00111110 000000000000 00 0000 01237899999999988
Q ss_pred hhh--cCCeEEEEecchhHHHHHHHHHHhCC------------CeEEEEcCCCCHHHHHHHHHhhcC-CCCCceEEEEec
Q 003311 436 LRK--SGHRVLLFSQMTRLMDILEIYLKLND------------FKFLRLDGSTKTEERGTLLKQFNA-PDSPYFMFLLST 500 (832)
Q Consensus 436 l~~--~g~kvLIFsq~~~~ldiL~~~L~~~g------------~~~~rldG~ts~~eR~~~i~~Fn~-~~~~~~v~LlSt 500 (832)
+.. .++++||||++..+++.|..+|...+ ..+..+||+++..+|..++++|+. +... +|++|
T Consensus 383 ~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT 459 (555)
T 3tbk_A 383 EYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN---ILIAT 459 (555)
T ss_dssp HHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS---EEEEC
T ss_pred HhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee---EEEEc
Confidence 764 45899999999999999999998763 455666679999999999999998 6655 68999
Q ss_pred cccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Q 003311 501 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVI 573 (832)
Q Consensus 501 ~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l~~~vi 573 (832)
+++++|||++.|++||+||+||||..|.||+|| |+.+++.+|.|++.++.++. ......|..+....+
T Consensus 460 ~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~~~~~~~ 527 (555)
T 3tbk_A 460 SVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKEKIMNESI 527 (555)
T ss_dssp CCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHHHHHHHHH
T ss_pred chhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999998 66688999999999999887 344444544555444
No 12
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=2.5e-36 Score=324.73 Aligned_cols=206 Identities=22% Similarity=0.243 Sum_probs=163.3
Q ss_pred CCCCeEEEEEcCCCHHHHHHHHHHHHhcccccc----cCCCc----chhHHHHHHHHHHhhCCCccccccccc------h
Q 003311 349 LPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLD----TGTGK----SKSLQNLSMQLRKCCNHPYLFVGEYNM------W 414 (832)
Q Consensus 349 LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~----~~~~~----~~~l~~~~~~LRk~cnhP~l~~~~~~~------~ 414 (832)
-|++.|+++.|+||+.|+++|+.+.......+. ..... ...+.+++|+||++||||||+...+.+ .
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~~ 99 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRD 99 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTT
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccccccc
Confidence 399999999999999999999999864332221 11111 246789999999999999999543211 1
Q ss_pred hhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCce
Q 003311 415 RKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYF 494 (832)
Q Consensus 415 ~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~ 494 (832)
..+.++..||||.+|+++|..+.+.|||||||||++.++|+|+++|..+|++|+|+||++...+ ++ ...++++
T Consensus 100 ~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k------~~~~~~~ 172 (328)
T 3hgt_A 100 VPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA------ANDFSCT 172 (328)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------CCSEE
T ss_pred hhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh------cccCCce
Confidence 2567889999999999999999999999999999999999999999999999999999965432 22 1235578
Q ss_pred EEEEeccccccccC-----cccCCeEEEeCCCCChhhH-HHHhhhcccc--CCcCcEEEEEEEeCCCHHHHHHHHH
Q 003311 495 MFLLSTRAGGLGLN-----LQTADTVIIFDSDWNPQMD-QQAEDRAHRI--GQKKEVRVFVLVSVGSIEEVILERA 562 (832)
Q Consensus 495 v~LlSt~agg~GLN-----L~~ad~VI~~D~~wNp~~~-~QAigRahRi--GQ~k~V~V~rLit~~siEe~Il~~~ 562 (832)
+||+ |++||.|+| |++||+||+||++|||+.+ +||+.|+||+ ||+++|.||||++.+|||+.++..-
T Consensus 173 i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~ 247 (328)
T 3hgt_A 173 VHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFG 247 (328)
T ss_dssp EEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHH
T ss_pred EEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHcc
Confidence 8877 668888886 8999999999999999998 9999999999 6899999999999999999999864
No 13
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.6e-35 Score=343.98 Aligned_cols=347 Identities=16% Similarity=0.169 Sum_probs=252.6
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhh--CCC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTW--APS 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~--~p~ 189 (832)
.+|+|||.+++.+++. +.+++|+++||+|||++++.++..++... .+++|||||. .++.||.++|.+| +|.
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 4899999999999887 57899999999999999988777766543 3589999997 7889999999999 566
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc-ccceE
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQRR 268 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l-~~~~r 268 (832)
..+..+.|....... .....+|+|+||+.+.+... .....|++|||||||++.+. .....+..+ .+.++
T Consensus 186 ~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~-~~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~ 255 (510)
T 2oca_A 186 AMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPK-EWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFK 255 (510)
T ss_dssp GGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCG-GGGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEE
T ss_pred cceEEEecCCccccc-------cccCCcEEEEeHHHHhhchh-hhhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEE
Confidence 677776664332211 12578999999998876522 22236899999999999873 344555666 67799
Q ss_pred EEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHhhc
Q 003311 269 LLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKY 348 (832)
Q Consensus 269 llLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~~~ 348 (832)
++||||| .+...+++++..++.|.++.... . .. .-...
T Consensus 256 l~lSATp-~~~~~~~~~~~~~~~~~~~~~~~----------~-----~~--------------------------~~~~~ 293 (510)
T 2oca_A 256 FGLSGSL-RDGKANIMQYVGMFGEIFKPVTT----------S-----KL--------------------------MEDGQ 293 (510)
T ss_dssp EEEESCG-GGCSSCHHHHHHHHCSEECCCCC----------C--------------------------------------
T ss_pred EEEEeCC-CCCcccHHHhHHhhCCeEEeeCH----------H-----HH--------------------------hhCCc
Confidence 9999999 55556677777666554322110 0 00 00013
Q ss_pred CCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHH
Q 003311 349 LPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFEL 428 (832)
Q Consensus 349 LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~ 428 (832)
+++.....+.+.++........ + ..+.. .+.. +.....|...
T Consensus 294 l~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~---~~~~-------------------~~~~~~~~~~ 335 (510)
T 2oca_A 294 VTELKINSIFLRYPDEFTTKLK------------G----KTYQE---EIKI-------------------ITGLSKRNKW 335 (510)
T ss_dssp --CCEEEEEEEECCHHHHHHHT------------T----CCHHH---HHHH-------------------HHTCHHHHHH
T ss_pred CCCceEEEEeecCChHHhcccc------------c----cchHH---HHHH-------------------HhccHHHHHH
Confidence 5666666677777665431100 0 00000 0111 1122345566
Q ss_pred HHHHHHhhhhc-CCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec-cccccc
Q 003311 429 LDRLLPKLRKS-GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST-RAGGLG 506 (832)
Q Consensus 429 L~~lL~~l~~~-g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt-~agg~G 506 (832)
+.+++...... +.++|||+. +..++.|...|...+.++..+||+++..+|.++++.|+++... +|++| .++++|
T Consensus 336 l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~---vLv~T~~~~~~G 411 (510)
T 2oca_A 336 IAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGI---IIVASYGVFSTG 411 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSC---EEEEEHHHHHHS
T ss_pred HHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCC---EEEEEcChhhcc
Confidence 66666665544 556777777 8888889999999988999999999999999999999987655 67777 999999
Q ss_pred cCcccCCeEEEeCCCCChhhHHHHhhhccccCCcC-cEEEEEEEeCCCHHHHHH
Q 003311 507 LNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKK-EVRVFVLVSVGSIEEVIL 559 (832)
Q Consensus 507 LNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k-~V~V~rLit~~siEe~Il 559 (832)
||++.+++||+++++||+..+.|++||++|.|+.+ .|.||.++...++.++++
T Consensus 412 iDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~~ 465 (510)
T 2oca_A 412 ISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSA 465 (510)
T ss_dssp CCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSSS
T ss_pred cccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhhh
Confidence 99999999999999999999999999999999987 699999999877555443
No 14
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=7.5e-35 Score=350.79 Aligned_cols=423 Identities=19% Similarity=0.185 Sum_probs=229.6
Q ss_pred cCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC--CCCCEEEEeCC-CchHHHHHHHHh
Q 003311 109 LLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG--VTGPHVIVAPK-AVLPNWINEFST 185 (832)
Q Consensus 109 ~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~--~~~p~LIV~P~-sll~qW~~E~~k 185 (832)
.+...+|+|||.+++.|++. +.++|++++||+|||++++.++...+...+ ..+++|||+|. +++.||.++|.+
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 33346999999999999886 789999999999999999888876665432 22689999997 899999999999
Q ss_pred hCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--H-hhcCceEEEEeCCcccCChhhHHHHHH
Q 003311 186 WAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--L-KKVQWIYMIVDEGHRLKNHECALAKTI 260 (832)
Q Consensus 186 ~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L-~~~~w~~vIiDEaHriKN~~sk~~kal 260 (832)
+++ ++.+..+.|....+....... ..++|+|+||+.+.+.... + ....|.+|||||||++++.........
T Consensus 84 ~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 84 YFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 986 678888888653322111111 3589999999999876543 2 344689999999999987654222221
Q ss_pred Hcc---------ccceEEEeeccCCCCC-------HHHHHHHHhccCCCCCCC----hHHHHHHhcccccccCc--ccCC
Q 003311 261 SGY---------QIQRRLLLTGTPIQNS-------LQELWSLLNFLLPTIFNS----VENFEEWFNAPFKDRGQ--VALT 318 (832)
Q Consensus 261 ~~l---------~~~~rllLTGTPlqN~-------l~EL~sLl~fL~p~~f~~----~~~F~~~f~~~~~~~~~--~~~~ 318 (832)
..+ ...++|+|||||..++ +..++.++..+....+.. ......+...|...... ....
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 111 4578899999998543 455666665555443322 22333333333211000 0000
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHH----hcccccccCCCcc----hhH
Q 003311 319 DEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTD----VGRVGLDTGTGKS----KSL 390 (832)
Q Consensus 319 ~ee~~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~----~~~~~~~~~~~~~----~~l 390 (832)
..-. ..+..+..-+ +.....+..+ |... ..+..++.....|..... ............. ..+
T Consensus 240 ~~fs-~~~~~l~~~i-----~~l~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 309 (696)
T 2ykg_A 240 DKFK-YIIAQLMRDT-----ESLAKRICKD-LENL---SQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 309 (696)
T ss_dssp CHHH-HHHHHHHHHH-----HHHHHHHSTT-GGGS---SSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHH
T ss_pred ChHH-HHHHHHHHHH-----HHHHHHHHHH-HHHh---hccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHH
Confidence 0000 0001000000 1111111111 0000 001111111122222111 1000000000000 011
Q ss_pred HHHHHHHHHhhCCCcccccccc--------------------chhhHHHH------------------hhcchHHHHHHH
Q 003311 391 QNLSMQLRKCCNHPYLFVGEYN--------------------MWRKEEII------------------RASGKFELLDRL 432 (832)
Q Consensus 391 ~~~~~~LRk~cnhP~l~~~~~~--------------------~~~~~~l~------------------~~S~Kl~~L~~l 432 (832)
......|++.. +|........ ......+. ..+.|+..|.++
T Consensus 310 ~~~~~~l~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~l 388 (696)
T 2ykg_A 310 FLYTSHLRKYN-DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 388 (696)
T ss_dssp HHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHh-HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 11222233221 2211110000 00000011 256799999999
Q ss_pred HHhhh--hcCCeEEEEecchhHHHHHHHHHHhCC----CeEEEEcC--------CCCHHHHHHHHHhhcC-CCCCceEEE
Q 003311 433 LPKLR--KSGHRVLLFSQMTRLMDILEIYLKLND----FKFLRLDG--------STKTEERGTLLKQFNA-PDSPYFMFL 497 (832)
Q Consensus 433 L~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~g----~~~~rldG--------~ts~~eR~~~i~~Fn~-~~~~~~v~L 497 (832)
+.... ..++++||||++...++.|..+|...| +++..++| +++.++|.+++++|+. +... +|
T Consensus 389 l~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~---vL 465 (696)
T 2ykg_A 389 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN---IL 465 (696)
T ss_dssp HHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCS---CS
T ss_pred HHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc---EE
Confidence 98764 367899999999999999999999988 89999955 9999999999999998 7665 68
Q ss_pred EeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHH
Q 003311 498 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEV 557 (832)
Q Consensus 498 lSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~ 557 (832)
|+|.++++|||++.+++||+||+|||+..+.||+|| +|. ++..+|.|++.+++++.
T Consensus 466 VaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 466 IATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp EEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred EEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 999999999999999999999999999999999999 774 66788999998877654
No 15
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=358.63 Aligned_cols=425 Identities=16% Similarity=0.184 Sum_probs=245.5
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhc---CCCCCEEEEeCC-CchHHH-HHHHHhhC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK---GVTGPHVIVAPK-AVLPNW-INEFSTWA 187 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~---~~~~p~LIV~P~-sll~qW-~~E~~k~~ 187 (832)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++... +..+++|||+|. .|+.|| .++|.+++
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 5899999999999986 77899999999999999988887665432 233689999997 588999 99999999
Q ss_pred CC-ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH--------HHHhhcCceEEEEeCCcccCChh---hH
Q 003311 188 PS-IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR--------QYLKKVQWIYMIVDEGHRLKNHE---CA 255 (832)
Q Consensus 188 p~-~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~--------~~L~~~~w~~vIiDEaHriKN~~---sk 255 (832)
+. +.+..+.|............ ...+|+|+||+.+.+.. ..+....|++|||||||++.+.. ..
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp TTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred CcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHH
Confidence 86 88888888754322111111 46899999999998643 22344579999999999985432 11
Q ss_pred HHHHHHc-c-------------ccceEEEeeccCCCCC-------HHHHHHHHhccCCCCCC----ChHHHHHHhccccc
Q 003311 256 LAKTISG-Y-------------QIQRRLLLTGTPIQNS-------LQELWSLLNFLLPTIFN----SVENFEEWFNAPFK 310 (832)
Q Consensus 256 ~~kal~~-l-------------~~~~rllLTGTPlqN~-------l~EL~sLl~fL~p~~f~----~~~~F~~~f~~~~~ 310 (832)
....+.. + ...++++|||||..++ ..++..++..+.+..+. ....+...+..|..
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~ 237 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCK 237 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEE
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCce
Confidence 1112211 1 4467999999999863 33444455555552221 12333333333221
Q ss_pred ccCcccCCh-HHHHHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCH-HHHHHHHHHHHhcccccccCCCcch
Q 003311 311 DRGQVALTD-EEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSA-WQKVYYQQVTDVGRVGLDTGTGKSK 388 (832)
Q Consensus 311 ~~~~~~~~~-ee~~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~-~Q~~lY~~i~~~~~~~~~~~~~~~~ 388 (832)
......... ......+..+...+..+ + .+.+. ..+.. .-..+...+....... ......
T Consensus 238 ~~~~~~~~~~~~~~~~l~~l~~~i~~~--------~--~~~~~------~~~g~~~~~~~~~~~~~~~~~~---~~~~~~ 298 (699)
T 4gl2_A 238 KFAIADATREDPFKEKLLEIMTRIQTY--------C--QMSPM------SDFGTQPYEQWAIQMEKKAAKE---GNRKER 298 (699)
T ss_dssp EEEEEC-----CHHHHHHHHHHHHHHH--------H--TCCCC------SCSSSHHHHHHHHHHHHHHHHH---TCTTTH
T ss_pred EEEEcccccCChHHHHHHHHHHHHHHH--------h--ccCcc------hhccchHHHHHHHHHHHHHHHh---hhhhhH
Confidence 111000000 00001111111111110 0 01110 00111 0001111111111100 000000
Q ss_pred hHHHHHHHHHHh------hCC-------Ccccc--------------------cccc---chhh----------HHHH--
Q 003311 389 SLQNLSMQLRKC------CNH-------PYLFV--------------------GEYN---MWRK----------EEII-- 420 (832)
Q Consensus 389 ~l~~~~~~LRk~------cnh-------P~l~~--------------------~~~~---~~~~----------~~l~-- 420 (832)
.....|+.. +.. +++.. .... .+.. ..+.
T Consensus 299 ---~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 375 (699)
T 4gl2_A 299 ---VCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAEN 375 (699)
T ss_dssp ---HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 000011110 000 00000 0000 0000 0000
Q ss_pred --hhcchHHHHHHHHHhhhhc---CCeEEEEecchhHHHHHHHHHHhC------CCeEEEEcCC--------CCHHHHHH
Q 003311 421 --RASGKFELLDRLLPKLRKS---GHRVLLFSQMTRLMDILEIYLKLN------DFKFLRLDGS--------TKTEERGT 481 (832)
Q Consensus 421 --~~S~Kl~~L~~lL~~l~~~---g~kvLIFsq~~~~ldiL~~~L~~~------g~~~~rldG~--------ts~~eR~~ 481 (832)
..+.|+..|.++|...... +.++||||++..+++.|..+|... |+++..++|+ ++..+|.+
T Consensus 376 ~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~ 455 (699)
T 4gl2_A 376 PEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKE 455 (699)
T ss_dssp CC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHH
Confidence 0346777777777765432 789999999999999999999987 9999999999 99999999
Q ss_pred HHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHH
Q 003311 482 LLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILER 561 (832)
Q Consensus 482 ~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~ 561 (832)
++++|+.+... +||+|.++|+|||++.+++||+||+||||..+.|++|||+|-| ..++.+...++.+......
T Consensus 456 ~~~~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~ 528 (699)
T 4gl2_A 456 VISKFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETV 528 (699)
T ss_dssp HHHHHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHH
T ss_pred HHHHHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHH
Confidence 99999998766 6899999999999999999999999999999999999986655 4455556666655544444
Q ss_pred HHHHHHHHHHHHh
Q 003311 562 AKQKMGIDAKVIQ 574 (832)
Q Consensus 562 ~~~K~~l~~~vi~ 574 (832)
...+..+....+.
T Consensus 529 ~~~~~~~~~~~~~ 541 (699)
T 4gl2_A 529 NDFREKMMYKAIH 541 (699)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.3e-34 Score=340.55 Aligned_cols=354 Identities=14% Similarity=0.145 Sum_probs=218.4
Q ss_pred CCCCchHHHHHHHHHHHHhhccC-CCeEEEcCCCCcHHHHHHHHHHHHHHhc------CCCCCEEEEeC-CCchHHHH-H
Q 003311 111 QGGELRAYQLEGLQWMLSLFNNN-LNGILADEMGLGKTIQTIALIAYLLENK------GVTGPHVIVAP-KAVLPNWI-N 181 (832)
Q Consensus 111 ~~~~Lr~yQ~egl~wml~~~~~~-~~gILaDemGlGKTiqaiali~~l~~~~------~~~~p~LIV~P-~sll~qW~-~ 181 (832)
.+..|+|||.+++++++..+.++ .+++|+++||+|||++++.++..++... ...+++||||| ..|+.||. +
T Consensus 175 ~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 175 SGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 34699999999999999876655 4579999999999999999988887653 14568999999 58889999 8
Q ss_pred HHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHH------HHhhcCceEEEEeCCcccCChh-h
Q 003311 182 EFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQ------YLKKVQWIYMIVDEGHRLKNHE-C 254 (832)
Q Consensus 182 E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~------~L~~~~w~~vIiDEaHriKN~~-s 254 (832)
+|..|.+.. ..+.+.. .....+|+|+||+.+..... .+....|++|||||||++.+.. +
T Consensus 255 ~~~~~~~~~--~~~~~~~------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~ 320 (590)
T 3h1t_A 255 TFTPFGDAR--HKIEGGK------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNS 320 (590)
T ss_dssp CCTTTCSSE--EECCC--------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC--------
T ss_pred HHHhcchhh--hhhhccC------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchH
Confidence 888886543 2222211 01578999999999877532 2334468999999999998753 4
Q ss_pred HHHHHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhh
Q 003311 255 ALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIR 334 (832)
Q Consensus 255 k~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~ 334 (832)
.....+..+...++++|||||..+...+++.++. +.++. .+- .+.+.
T Consensus 321 ~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~---~~~~~--------------------~~~----------~~~i~ 367 (590)
T 3h1t_A 321 NWREILEYFEPAFQIGMTATPLREDNRDTYRYFG---NPIYT--------------------YSL----------RQGID 367 (590)
T ss_dssp -CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC---SCSEE--------------------ECH----------HHHHH
T ss_pred HHHHHHHhCCcceEEEeccccccccchhHHHHcC---CceEe--------------------cCH----------HHHhh
Confidence 4555667778889999999999888776665542 11110 000 00000
Q ss_pred hhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccch
Q 003311 335 PFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMW 414 (832)
Q Consensus 335 pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~ 414 (832)
...+++.....+......................+... .+...
T Consensus 368 -----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~ 410 (590)
T 3h1t_A 368 -----------DGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDG--------------------------EYQTK 410 (590)
T ss_dssp -----------HTSSCCEEEEEEEETTCC-------------------------------------------------CC
T ss_pred -----------CCccCCcEEEEeeeeeeccccccccccccccccccccc--------------------------cCCHH
Confidence 01123333333333222111100000000000000000 00000
Q ss_pred hhHHHHhhcchHHHHHHHHHhhh---hcCCeEEEEecchhHHHHHHHHHHhCCCe--------EEEEcCCCCHHHHHHHH
Q 003311 415 RKEEIIRASGKFELLDRLLPKLR---KSGHRVLLFSQMTRLMDILEIYLKLNDFK--------FLRLDGSTKTEERGTLL 483 (832)
Q Consensus 415 ~~~~l~~~S~Kl~~L~~lL~~l~---~~g~kvLIFsq~~~~ldiL~~~L~~~g~~--------~~rldG~ts~~eR~~~i 483 (832)
.....+....+...+.+.+..+. ..+.|+||||++...++.|...|...+.. +..++|.++. +|..++
T Consensus 411 ~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l 489 (590)
T 3h1t_A 411 DFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHL 489 (590)
T ss_dssp SHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHH
T ss_pred HhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHH
Confidence 01111122233334333333222 34689999999999999999999765432 7889999764 799999
Q ss_pred HhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCC---cCcEEEEEEE
Q 003311 484 KQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQ---KKEVRVFVLV 549 (832)
Q Consensus 484 ~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ---~k~V~V~rLi 549 (832)
++|++++.++.++|+||+++++|||++.+++||+++++|++..+.|++||++|+|+ +..+.||.++
T Consensus 490 ~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 490 SRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 99999887777899999999999999999999999999999999999999999995 5569999988
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.2e-32 Score=307.19 Aligned_cols=329 Identities=17% Similarity=0.191 Sum_probs=230.2
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC---CC
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---PS 189 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~---p~ 189 (832)
.|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||. .++.||.+++.++. |+
T Consensus 30 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 699999999998876 78899999999999999877666554433345589999997 78899999999885 57
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCChhh---HHHHHHHcc-
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHEC---ALAKTISGY- 263 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~~s---k~~kal~~l- 263 (832)
+.+..+.|......... .+.. +.++|+|+||+.+...... +....+++|||||||++.+... .+...+...
T Consensus 106 ~~~~~~~g~~~~~~~~~-~~~~--~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~ 182 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDEE-VLKK--NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 182 (391)
T ss_dssp CCEEEECTTSCHHHHHH-HHHH--SCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC
T ss_pred eEEEEEeCCCCHHHHHH-HHhc--CCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCC
Confidence 78888887654332221 1111 4679999999999765332 2234788999999999976322 222233333
Q ss_pred ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHh
Q 003311 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343 (832)
Q Consensus 264 ~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~ 343 (832)
....++++||||-.. ..++.. .++..|.... .. .
T Consensus 183 ~~~~~i~~SAT~~~~-~~~~~~-----------------~~~~~~~~~~---------------------------~~-~ 216 (391)
T 1xti_A 183 HEKQVMMFSATLSKE-IRPVCR-----------------KFMQDPMEIF---------------------------VD-D 216 (391)
T ss_dssp SSSEEEEEESSCCST-HHHHHH-----------------HHCSSCEEEE---------------------------CC-C
T ss_pred CCceEEEEEeeCCHH-HHHHHH-----------------HHcCCCeEEE---------------------------ec-C
Confidence 356789999998532 111110 0111110000 00 0
Q ss_pred HHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhc
Q 003311 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 423 (832)
Q Consensus 344 dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S 423 (832)
.....+.......+.+ ...
T Consensus 217 ~~~~~~~~~~~~~~~~-------------------------------------------------------------~~~ 235 (391)
T 1xti_A 217 ETKLTLHGLQQYYVKL-------------------------------------------------------------KDN 235 (391)
T ss_dssp CCCCCCTTCEEEEEEC-------------------------------------------------------------CGG
T ss_pred ccccCcccceEEEEEc-------------------------------------------------------------Cch
Confidence 0000000011111110 112
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
.|...|..++... .++++||||+....++.+..+|...|+.+..++|+++..+|..+++.|+.+... +|++|.++
T Consensus 236 ~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~ 310 (391)
T 1xti_A 236 EKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATNLF 310 (391)
T ss_dssp GHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS---EEEESCCC
T ss_pred hHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc---EEEECChh
Confidence 3455566666654 678999999999999999999999999999999999999999999999987765 79999999
Q ss_pred ccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHH
Q 003311 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~ 564 (832)
++|+|++.+++||+|+++|++..+.|++||++|.|+...+ +.|++.. -+.+++.....
T Consensus 311 ~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~-~~~~~~~~~~~ 368 (391)
T 1xti_A 311 GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSDE-NDAKILNDVQD 368 (391)
T ss_dssp SSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEE--EEEECSH-HHHHHHHHHHH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEE--EEEEccc-chHHHHHHHHH
Confidence 9999999999999999999999999999999999976554 4445433 24455555444
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.8e-32 Score=303.20 Aligned_cols=325 Identities=16% Similarity=0.201 Sum_probs=228.9
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--Cc
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--SI 190 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~~ 190 (832)
+|+|||.+++.+++. +.+++++.+||+|||++++..+...+.......++|||||. .++.||.+++.++++ ++
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 699999999999986 67899999999999998876665554433345589999997 788999999999976 46
Q ss_pred eEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCChhh--HHHHHHHcc-cc
Q 003311 191 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHEC--ALAKTISGY-QI 265 (832)
Q Consensus 191 ~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~~s--k~~kal~~l-~~ 265 (832)
.+..+.|.......... ....++|+|+|++.+...... +...++++|||||||++.+... .+...+..+ ..
T Consensus 119 ~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~ 194 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT 194 (400)
T ss_dssp CEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSS
T ss_pred eEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcC
Confidence 67777776554433221 125789999999998764332 2224689999999999876532 222233333 35
Q ss_pred ceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHH
Q 003311 266 QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 345 (832)
Q Consensus 266 ~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv 345 (832)
...++||||+-.. +.++ + ..++..+. .+... ..
T Consensus 195 ~~~i~lSAT~~~~-~~~~---~--------------~~~~~~~~---------------------------~~~~~-~~- 227 (400)
T 1s2m_A 195 HQSLLFSATFPLT-VKEF---M--------------VKHLHKPY---------------------------EINLM-EE- 227 (400)
T ss_dssp CEEEEEESCCCHH-HHHH---H--------------HHHCSSCE---------------------------EESCC-SS-
T ss_pred ceEEEEEecCCHH-HHHH---H--------------HHHcCCCe---------------------------EEEec-cc-
Confidence 6789999997311 1100 0 00111110 00000 00
Q ss_pred hhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcch
Q 003311 346 EKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGK 425 (832)
Q Consensus 346 ~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~K 425 (832)
...+........+ ....|
T Consensus 228 -~~~~~~~~~~~~~-------------------------------------------------------------~~~~k 245 (400)
T 1s2m_A 228 -LTLKGITQYYAFV-------------------------------------------------------------EERQK 245 (400)
T ss_dssp -CBCTTEEEEEEEC-------------------------------------------------------------CGGGH
T ss_pred -cccCCceeEEEEe-------------------------------------------------------------chhhH
Confidence 0000001111110 11345
Q ss_pred HHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccccc
Q 003311 426 FELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL 505 (832)
Q Consensus 426 l~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~ 505 (832)
+..+..++... .+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+.+... +|++|.++++
T Consensus 246 ~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~~ 320 (400)
T 1s2m_A 246 LHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR---TLVCSDLLTR 320 (400)
T ss_dssp HHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEESSCSSS
T ss_pred HHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCc---EEEEcCcccc
Confidence 56666666553 567999999999999999999999999999999999999999999999987765 7999999999
Q ss_pred ccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHH
Q 003311 506 GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564 (832)
Q Consensus 506 GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~ 564 (832)
|||++.+++||+||++|++..+.|++||++|.|+. -.++.|++.+. ...+....+
T Consensus 321 Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~l~~~~~--~~~~~~i~~ 375 (400)
T 1s2m_A 321 GIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHL--GLAINLINWND--RFNLYKIEQ 375 (400)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCC--EEEEEEECGGG--HHHHHHHHH
T ss_pred CCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCC--ceEEEEeccch--HHHHHHHHH
Confidence 99999999999999999999999999999999965 45666777653 334444433
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.8e-32 Score=296.80 Aligned_cols=320 Identities=17% Similarity=0.232 Sum_probs=226.7
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 189 (832)
.+|+|||.+++.+++. .+.++|++.+||+|||++++..+..+... ....++|||||. .++.||.+++.++++ .
T Consensus 27 ~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 102 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNE-NNGIEAIILTPTRELAIQVADEIESLKGNKN 102 (367)
T ss_dssp CSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCS-SSSCCEEEECSCHHHHHHHHHHHHHHHCSSC
T ss_pred CCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhcc-cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCC
Confidence 3799999999998876 23678999999999999987776655433 234579999997 678999999999875 4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCChh--hHHHHHHHcc-c
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGY-Q 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~~--sk~~kal~~l-~ 264 (832)
..+..+.|.......... . ...+|+|+||+.+.+.... +....|++|||||||++.+.. ..+...+..+ .
T Consensus 103 ~~v~~~~~~~~~~~~~~~-~----~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~ 177 (367)
T 1hv8_A 103 LKIAKIYGGKAIYPQIKA-L----KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNK 177 (367)
T ss_dssp CCEEEECTTSCHHHHHHH-H----HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCS
T ss_pred ceEEEEECCcchHHHHhh-c----CCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCC
Confidence 566667665544332221 1 3678999999999765432 223468999999999987654 3344444444 4
Q ss_pred cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhH
Q 003311 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344 (832)
Q Consensus 265 ~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~d 344 (832)
..+.++|||||.... ..++ ..++..+. .+
T Consensus 178 ~~~~i~~SAT~~~~~----~~~~--------------~~~~~~~~---------------------------~~------ 206 (367)
T 1hv8_A 178 DKRILLFSATMPREI----LNLA--------------KKYMGDYS---------------------------FI------ 206 (367)
T ss_dssp SCEEEEECSSCCHHH----HHHH--------------HHHCCSEE---------------------------EE------
T ss_pred CceEEEEeeccCHHH----HHHH--------------HHHcCCCe---------------------------EE------
Confidence 567799999994321 1111 00010000 00
Q ss_pred HhhcCCCC-eEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhc
Q 003311 345 VEKYLPGK-SQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 423 (832)
Q Consensus 345 v~~~LP~k-~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S 423 (832)
....+.. ....+.+ ...
T Consensus 207 -~~~~~~~~~~~~~~~-------------------------------------------------------------~~~ 224 (367)
T 1hv8_A 207 -KAKINANIEQSYVEV-------------------------------------------------------------NEN 224 (367)
T ss_dssp -ECCSSSSSEEEEEEC-------------------------------------------------------------CGG
T ss_pred -EecCCCCceEEEEEe-------------------------------------------------------------ChH
Confidence 0000000 0001100 012
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
.|+..|.+++. ..+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+.+... +|++|.++
T Consensus 225 ~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~ 298 (367)
T 1hv8_A 225 ERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---ILIATDVM 298 (367)
T ss_dssp GHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---EEEECTTH
T ss_pred HHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe---EEEECChh
Confidence 34455555554 5678999999999999999999999999999999999999999999999987665 78999999
Q ss_pred ccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHH
Q 003311 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~ 564 (832)
++|+|++.+++||+++++||+..+.|++||++|.|+...+ +.|++.... ..+....+
T Consensus 299 ~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~--~~~~~i~~ 355 (367)
T 1hv8_A 299 SRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRREY--KKLRYIER 355 (367)
T ss_dssp HHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTSH--HHHHHHHH
T ss_pred hcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE--EEEEcHHHH--HHHHHHHH
Confidence 9999999999999999999999999999999999977654 555665533 34444433
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=9.1e-32 Score=302.84 Aligned_cols=319 Identities=18% Similarity=0.223 Sum_probs=226.2
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 189 (832)
.+|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||. .++.||.+++.++.+ .
T Consensus 58 ~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 133 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN 133 (410)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Confidence 3699999999999886 78899999999999999877666554433345689999997 688999999999874 3
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCChh--hHHHHHHHcc-c
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGY-Q 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~~--sk~~kal~~l-~ 264 (832)
+.+..+.|............ ...+|+|+|++.+...... +....+++|||||||++.+.+ ..+...+..+ .
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~ 209 (410)
T 2j0s_A 134 VQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 209 (410)
T ss_dssp CCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCT
T ss_pred eEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCcc
Confidence 56666666554433322211 3568999999998764332 233468999999999987654 3344444444 3
Q ss_pred cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhH
Q 003311 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344 (832)
Q Consensus 265 ~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~d 344 (832)
..+.+++||||-. ++..++... +..|.. +....
T Consensus 210 ~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~---------------------------~~~~~-- 242 (410)
T 2j0s_A 210 ATQVVLISATLPH----EILEMTNKF--------------MTDPIR---------------------------ILVKR-- 242 (410)
T ss_dssp TCEEEEEESCCCH----HHHTTGGGT--------------CSSCEE---------------------------ECCCG--
T ss_pred CceEEEEEcCCCH----HHHHHHHHH--------------cCCCEE---------------------------EEecC--
Confidence 5678999999832 111111110 000100 00000
Q ss_pred HhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcc
Q 003311 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 424 (832)
Q Consensus 345 v~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~ 424 (832)
....++......+.++- ...
T Consensus 243 ~~~~~~~~~~~~~~~~~------------------------------------------------------------~~~ 262 (410)
T 2j0s_A 243 DELTLEGIKQFFVAVER------------------------------------------------------------EEW 262 (410)
T ss_dssp GGCSCTTEEEEEEEESS------------------------------------------------------------TTH
T ss_pred ccccCCCceEEEEEeCc------------------------------------------------------------HHh
Confidence 00001111111111110 112
Q ss_pred hHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc
Q 003311 425 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504 (832)
Q Consensus 425 Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 504 (832)
|+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+.+... +|++|.+++
T Consensus 263 k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 337 (410)
T 2j0s_A 263 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---VLISTDVWA 337 (410)
T ss_dssp HHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---EEEECGGGS
T ss_pred HHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCC---EEEECChhh
Confidence 445555666554 346999999999999999999999999999999999999999999999987765 789999999
Q ss_pred cccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCC
Q 003311 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 553 (832)
Q Consensus 505 ~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~s 553 (832)
+|||++.+++||+||++|++..+.|++||++|.|++. .++.|++...
T Consensus 338 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 9999999999999999999999999999999999654 5666677653
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.98 E-value=1.9e-31 Score=290.90 Aligned_cols=312 Identities=14% Similarity=0.173 Sum_probs=214.3
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 189 (832)
..|+|||.+++.+++. +.+++++++||+|||++++..+... ..++|||||. .++.||.+++.++.+ +
T Consensus 15 ~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 84 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMD 84 (337)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Confidence 4799999999998885 7789999999999999887665432 3579999997 788999999999874 4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCChh--hHHHHHHHcccc
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQI 265 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~~--sk~~kal~~l~~ 265 (832)
..+..+.|......... .+ ..++|+|+|++.+.+.... +....|++||+||||++.+.. ..+...+..+..
T Consensus 85 ~~~~~~~~~~~~~~~~~-~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~ 159 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQIN-RV----RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSN 159 (337)
T ss_dssp CCEEEECTTSCHHHHHH-HH----TTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTT
T ss_pred CcEEEEECCcchHHHHh-hc----CCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCc
Confidence 56777777554332221 11 4588999999999765332 223468999999999986433 334444455544
Q ss_pred -ceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhH
Q 003311 266 -QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344 (832)
Q Consensus 266 -~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~d 344 (832)
...+++||||-.. +..++ ..++..+.. +...
T Consensus 160 ~~~~~~~SAT~~~~----~~~~~--------------~~~~~~~~~---------------------------~~~~--- 191 (337)
T 2z0m_A 160 RKITGLFSATIPEE----IRKVV--------------KDFITNYEE---------------------------IEAC--- 191 (337)
T ss_dssp CSEEEEEESCCCHH----HHHHH--------------HHHSCSCEE---------------------------EECS---
T ss_pred ccEEEEEeCcCCHH----HHHHH--------------HHhcCCcee---------------------------eecc---
Confidence 4456789999321 11111 111110000 0000
Q ss_pred HhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcc
Q 003311 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 424 (832)
Q Consensus 345 v~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~ 424 (832)
...+......+.+...
T Consensus 192 --~~~~~~~~~~~~~~~~-------------------------------------------------------------- 207 (337)
T 2z0m_A 192 --IGLANVEHKFVHVKDD-------------------------------------------------------------- 207 (337)
T ss_dssp --GGGGGEEEEEEECSSS--------------------------------------------------------------
T ss_pred --cccCCceEEEEEeChH--------------------------------------------------------------
Confidence 0001111111111100
Q ss_pred hHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc
Q 003311 425 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504 (832)
Q Consensus 425 Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 504 (832)
.......+. ...+.++||||+....++.+...|. .+..++|+++..+|..+++.|+.+... +|++|.+++
T Consensus 208 -~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~~ 277 (337)
T 2z0m_A 208 -WRSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYD---MLITTDVAS 277 (337)
T ss_dssp -SHHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECHHHH
T ss_pred -HHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCc---EEEEcCccc
Confidence 000001111 1357899999999999999988876 678999999999999999999988766 799999999
Q ss_pred cccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 003311 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 562 (832)
Q Consensus 505 ~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~ 562 (832)
+|+|++.+++||+|++||++..+.|++||++|.|+...+.+|.. .+..+.+.|.+.+
T Consensus 278 ~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 278 RGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp TTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred cCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887777766 4444555554433
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=4.1e-31 Score=297.18 Aligned_cols=319 Identities=17% Similarity=0.213 Sum_probs=214.7
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 189 (832)
..|+|||.+++..++. +.++|++.+||+|||++++..+...+......+++|||||. .++.||.+++.+++. .
T Consensus 61 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 4799999999988876 77899999999999999876666555443345689999997 688999999999863 4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCCh--hhHHHHHHHcc-c
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTISGY-Q 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~--~sk~~kal~~l-~ 264 (832)
..+....|.......... .. ...++|+|+|++.+...... +....+++|||||||++.+. ...+...+..+ .
T Consensus 137 ~~~~~~~~~~~~~~~~~~-~~--~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 213 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEVQK-LQ--MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNS 213 (414)
T ss_dssp CCEEECCCCTTHHHHHHH-HT--TTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCT
T ss_pred ceEEEEECCcchHHHHHH-Hh--cCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCC
Confidence 556666665544333221 11 15689999999998765433 33345889999999998543 34555555555 4
Q ss_pred cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhH
Q 003311 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344 (832)
Q Consensus 265 ~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~d 344 (832)
..+.++|||||-. ++..++.... ..+... .....
T Consensus 214 ~~~~i~~SAT~~~----~~~~~~~~~~--------------~~~~~~---------------------------~~~~~- 247 (414)
T 3eiq_A 214 NTQVVLLSATMPS----DVLEVTKKFM--------------RDPIRI---------------------------LVKKE- 247 (414)
T ss_dssp TCEEEEECSCCCH----HHHHHHTTTC--------------SSCEEE---------------------------CCCCC-
T ss_pred CCeEEEEEEecCH----HHHHHHHHHc--------------CCCEEE---------------------------EecCC-
Confidence 5677999999832 1111111110 000000 00000
Q ss_pred HhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcc
Q 003311 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 424 (832)
Q Consensus 345 v~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~ 424 (832)
....+......+.+. ....
T Consensus 248 -~~~~~~~~~~~~~~~------------------------------------------------------------~~~~ 266 (414)
T 3eiq_A 248 -ELTLEGIRQFYINVE------------------------------------------------------------REEW 266 (414)
T ss_dssp -CCCTTSCCEEEEECS------------------------------------------------------------SSTT
T ss_pred -ccCCCCceEEEEEeC------------------------------------------------------------hHHh
Confidence 000000111111110 0123
Q ss_pred hHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc
Q 003311 425 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504 (832)
Q Consensus 425 Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 504 (832)
|+..+..++... .+.++||||+....++.+...|...++.+..+||+++..+|..+++.|+.+... +|++|.+++
T Consensus 267 ~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 341 (414)
T 3eiq_A 267 KLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR---VLITTDLLA 341 (414)
T ss_dssp HHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC------CEEECSSCC
T ss_pred HHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCc---EEEECCccc
Confidence 556666666554 457999999999999999999999999999999999999999999999987655 699999999
Q ss_pred cccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 505 ~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
+|||++.+++||+||++||+..+.|++||++|.|+.. .+|.|++..
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 387 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG--VAINMVTEE 387 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC---------CEEEEECST
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc--eEEEEEcHH
Confidence 9999999999999999999999999999999999764 556677766
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=1.9e-30 Score=289.07 Aligned_cols=326 Identities=16% Similarity=0.202 Sum_probs=221.7
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 189 (832)
..|+|||.+++.+++.. ++.++|++.+||+|||++++..+...+......+++|||||. .++.||.+++.++.. .
T Consensus 26 ~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 48999999999988751 237889999999999999877766555444455689999997 588999999998763 4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCChh---hHHHHHHHcc-
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE---CALAKTISGY- 263 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~~---sk~~kal~~l- 263 (832)
..+....+...... ....++|+|+|++.+...... +...++++|||||||++.+.. .........+
T Consensus 104 ~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~ 175 (395)
T 3pey_A 104 ITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP 175 (395)
T ss_dssp CCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC
T ss_pred eeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCC
Confidence 45555555432211 114688999999999765322 223368999999999985422 2222333334
Q ss_pred ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHh
Q 003311 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343 (832)
Q Consensus 264 ~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~ 343 (832)
...+.+++||||-. .+..++..+.+ .+.. +.....
T Consensus 176 ~~~~~i~~SAT~~~----~~~~~~~~~~~--------------~~~~---------------------------~~~~~~ 210 (395)
T 3pey_A 176 KDTQLVLFSATFAD----AVRQYAKKIVP--------------NANT---------------------------LELQTN 210 (395)
T ss_dssp TTCEEEEEESCCCH----HHHHHHHHHSC--------------SCEE---------------------------ECCCGG
T ss_pred CCcEEEEEEecCCH----HHHHHHHHhCC--------------CCeE---------------------------EEcccc
Confidence 34578999999831 11111111100 0000 000000
Q ss_pred HHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhc
Q 003311 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 423 (832)
Q Consensus 344 dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S 423 (832)
....+........+. ...
T Consensus 211 --~~~~~~~~~~~~~~~------------------------------------------------------------~~~ 228 (395)
T 3pey_A 211 --EVNVDAIKQLYMDCK------------------------------------------------------------NEA 228 (395)
T ss_dssp --GCSCTTEEEEEEECS------------------------------------------------------------SHH
T ss_pred --ccccccccEEEEEcC------------------------------------------------------------chH
Confidence 000111111111111 012
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
.|...+..++... .+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+.+... +|++|.++
T Consensus 229 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~ 303 (395)
T 3pey_A 229 DKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK---VLITTNVL 303 (395)
T ss_dssp HHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCC---EEEECGGG
T ss_pred HHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCC---EEEECChh
Confidence 2344455555443 467999999999999999999999999999999999999999999999998765 79999999
Q ss_pred ccccCcccCCeEEEeCCCC------ChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 003311 504 GLGLNLQTADTVIIFDSDW------NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~~w------Np~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~ 563 (832)
++|||++.+++||+||+|| ++..+.|++||++|.|++.. ++.|+... -+..++....
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~-~~~~~~~~i~ 366 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV--AISFVHDK-NSFNILSAIQ 366 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEE--EEEEECSH-HHHHHHHHHH
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCce--EEEEEech-HHHHHHHHHH
Confidence 9999999999999999999 99999999999999997544 44445432 2334444433
No 24
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=1.2e-29 Score=289.15 Aligned_cols=315 Identities=17% Similarity=0.193 Sum_probs=220.3
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHH-HHHHhcC----CCCCEEEEeCC-CchHHHHHHHHhh
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENKG----VTGPHVIVAPK-AVLPNWINEFSTW 186 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~-~l~~~~~----~~~p~LIV~P~-sll~qW~~E~~k~ 186 (832)
.+|+|+|.+++..++. +.+.|++.+||+|||++++..+. .+..... ....+|||||. .+..||.+++.++
T Consensus 77 ~~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 77 KIPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 4799999999998875 78899999999999998765444 4444321 24479999997 7889999999998
Q ss_pred CC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCChh--hHHHHHH
Q 003311 187 AP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTI 260 (832)
Q Consensus 187 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~~--sk~~kal 260 (832)
+. .+.+.++.|.......... . . ..++|+|+|++.+...... +.-..+.+|||||||++.+.+ ..+...+
T Consensus 153 ~~~~~~~~~~~~gg~~~~~~~~~-l-~--~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~ 228 (434)
T 2db3_A 153 AFESYLKIGIVYGGTSFRHQNEC-I-T--RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIM 228 (434)
T ss_dssp TTTSSCCCCEECTTSCHHHHHHH-H-T--TCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHH
T ss_pred hccCCcEEEEEECCCCHHHHHHH-h-h--cCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHH
Confidence 74 3555555555443322211 1 1 5689999999999765332 223467899999999987643 4445555
Q ss_pred Hcc---ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhh
Q 003311 261 SGY---QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFI 337 (832)
Q Consensus 261 ~~l---~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfl 337 (832)
..+ .....+++|||+- .++..+...... .+ ..
T Consensus 229 ~~~~~~~~~q~l~~SAT~~----~~~~~~~~~~l~--------------~~---------------------------~~ 263 (434)
T 2db3_A 229 THVTMRPEHQTLMFSATFP----EEIQRMAGEFLK--------------NY---------------------------VF 263 (434)
T ss_dssp HCTTSCSSCEEEEEESCCC----HHHHHHHHTTCS--------------SC---------------------------EE
T ss_pred HhcCCCCCceEEEEeccCC----HHHHHHHHHhcc--------------CC---------------------------EE
Confidence 543 4567899999972 112111111000 00 00
Q ss_pred hhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhH
Q 003311 338 LRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKE 417 (832)
Q Consensus 338 lRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~ 417 (832)
+. . .......+......+.+.
T Consensus 264 i~-~-~~~~~~~~~i~~~~~~~~--------------------------------------------------------- 284 (434)
T 2db3_A 264 VA-I-GIVGGACSDVKQTIYEVN--------------------------------------------------------- 284 (434)
T ss_dssp EE-E-SSTTCCCTTEEEEEEECC---------------------------------------------------------
T ss_pred EE-e-ccccccccccceEEEEeC---------------------------------------------------------
Confidence 00 0 000000011111111111
Q ss_pred HHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 418 EIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 418 ~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
...|...|.+++... +.++||||+....++.+..+|...|+.+..+||+++..+|..+++.|+.+... +|
T Consensus 285 ----~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vL 354 (434)
T 2db3_A 285 ----KYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK---VL 354 (434)
T ss_dssp ----GGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCS---EE
T ss_pred ----cHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCc---EE
Confidence 123445555555543 44599999999999999999999999999999999999999999999998766 79
Q ss_pred EeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeC
Q 003311 498 LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551 (832)
Q Consensus 498 lSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~ 551 (832)
++|.++++|||++.+++||+||+|+++..|.||+||++|.|++. .++.|++.
T Consensus 355 vaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G--~a~~~~~~ 406 (434)
T 2db3_A 355 IATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNG--RATSFFDP 406 (434)
T ss_dssp EECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCE--EEEEEECT
T ss_pred EEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCC--EEEEEEec
Confidence 99999999999999999999999999999999999999999754 45555663
No 25
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=9.6e-30 Score=286.50 Aligned_cols=318 Identities=17% Similarity=0.223 Sum_probs=218.8
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHH-HHHHHhcC-----------------CCCCEEEEeCC-
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI-AYLLENKG-----------------VTGPHVIVAPK- 173 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali-~~l~~~~~-----------------~~~p~LIV~P~- 173 (832)
..|+|+|.+++..++. +.+.|+..+||+|||++++..+ ..+..... ....+|||+|.
T Consensus 36 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 4899999999987765 7889999999999999865444 44443221 12468999997
Q ss_pred CchHHHHHHHHhhCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCccc
Q 003311 174 AVLPNWINEFSTWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRL 249 (832)
Q Consensus 174 sll~qW~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHri 249 (832)
.++.||.+++.+++. ++.+..+.|.......... + ...++|+|+|++.+...... +....+++|||||||++
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~---~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~ 187 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD-L---ERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRM 187 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH-H---TTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH-h---hCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHh
Confidence 788999999998863 4667777766544333221 1 14689999999999765432 22335789999999998
Q ss_pred CChh--hHHHHHHHc--cc---cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHH
Q 003311 250 KNHE--CALAKTISG--YQ---IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQ 322 (832)
Q Consensus 250 KN~~--sk~~kal~~--l~---~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~ 322 (832)
...+ ..+...+.. +. ..+.+++||||-. ++..++. .++..+..
T Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~--------------~~~~~~~~------------ 237 (417)
T 2i4i_A 188 LDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLAR--------------DFLDEYIF------------ 237 (417)
T ss_dssp HHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHH--------------HHCSSCEE------------
T ss_pred hccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHH--------------HHcCCCEE------------
Confidence 5432 333333332 22 3568999999832 1111111 00100000
Q ss_pred HHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhC
Q 003311 323 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402 (832)
Q Consensus 323 ~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cn 402 (832)
+.-. ......+......+.++
T Consensus 238 ---------------~~~~--~~~~~~~~i~~~~~~~~------------------------------------------ 258 (417)
T 2i4i_A 238 ---------------LAVG--RVGSTSENITQKVVWVE------------------------------------------ 258 (417)
T ss_dssp ---------------EEEC------CCSSEEEEEEECC------------------------------------------
T ss_pred ---------------EEeC--CCCCCccCceEEEEEec------------------------------------------
Confidence 0000 00000111111111111
Q ss_pred CCccccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHH
Q 003311 403 HPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTL 482 (832)
Q Consensus 403 hP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~ 482 (832)
...|...|.+++... ..+.++||||+....++.+..+|...|+.+..+||+++.++|..+
T Consensus 259 -------------------~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~ 318 (417)
T 2i4i_A 259 -------------------ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 318 (417)
T ss_dssp -------------------GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred -------------------cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHH
Confidence 123455566666553 357899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 483 LKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 483 i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
++.|+.+... +|++|.++++|||++.+++||+||++|++..+.|++||++|.|+. -.++.|++..
T Consensus 319 ~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 383 (417)
T 2i4i_A 319 LHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL--GLATSFFNER 383 (417)
T ss_dssp HHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CC--EEEEEEECGG
T ss_pred HHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCC--ceEEEEEccc
Confidence 9999987765 799999999999999999999999999999999999999999975 4556666654
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=1.3e-31 Score=298.98 Aligned_cols=317 Identities=16% Similarity=0.218 Sum_probs=115.5
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 189 (832)
.+|+|||.+++.+++. +.+++++++||+|||++++..+...+......+++|||||. .++.||.+++.++++ +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 4899999999999887 78899999999999998765555444433445689999997 788999999999875 4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCC--hhhHHHHHHHcc-c
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKN--HECALAKTISGY-Q 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN--~~sk~~kal~~l-~ 264 (832)
+.+..+.|.......... + ..++|+|+|++.+...... +....|++|||||||++.+ ....+...+..+ .
T Consensus 118 ~~~~~~~g~~~~~~~~~~-~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~ 192 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAEG-L----RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP 192 (394)
T ss_dssp CCEEEECSSCCHHHHHHH-H----HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT
T ss_pred eeEEEEeCCCchHHHHhh-c----CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCC
Confidence 667777776543322211 1 2568999999998765432 2234789999999999843 333444555555 4
Q ss_pred cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhH
Q 003311 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344 (832)
Q Consensus 265 ~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~d 344 (832)
..++++|||||-. ++..++ ..++..|..
T Consensus 193 ~~~~i~~SAT~~~----~~~~~~--------------~~~~~~~~~---------------------------------- 220 (394)
T 1fuu_A 193 TTQVVLLSATMPN----DVLEVT--------------TKFMRNPVR---------------------------------- 220 (394)
T ss_dssp TCEEEEECSSCCH----HHHHHH--------------HHHCCSCEE----------------------------------
T ss_pred CceEEEEEEecCH----HHHHHH--------------HHhcCCCeE----------------------------------
Confidence 5678999999832 111111 011111100
Q ss_pred HhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcc
Q 003311 345 VEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASG 424 (832)
Q Consensus 345 v~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~ 424 (832)
..+ ...... ..++ .+ -+.. ......
T Consensus 221 ----------~~~--~~~~~~------------------------~~~~----~~----~~~~-----------~~~~~~ 245 (394)
T 1fuu_A 221 ----------ILV--KKDELT------------------------LEGI----KQ----FYVN-----------VEEEEY 245 (394)
T ss_dssp ----------EEE--CC---------------------------------------------------------------
T ss_pred ----------EEe--cCcccc------------------------CCCc----eE----EEEE-----------cCchhh
Confidence 000 000000 0000 00 0000 000112
Q ss_pred hHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc
Q 003311 425 KFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG 504 (832)
Q Consensus 425 Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg 504 (832)
|...+..++... .+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+.+... +|++|.+++
T Consensus 246 ~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~~ 320 (394)
T 1fuu_A 246 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLLA 320 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCc---EEEECChhh
Confidence 344444555442 456999999999999999999999999999999999999999999999987654 789999999
Q ss_pred cccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 505 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 505 ~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
+|+|++.+++||+||++|++..+.|++||++|.|+... ++.|++..
T Consensus 321 ~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 366 (394)
T 1fuu_A 321 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNE 366 (394)
T ss_dssp ------------------------------------------------
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCce--EEEEEchh
Confidence 99999999999999999999999999999999997654 44455554
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=7.5e-29 Score=280.09 Aligned_cols=317 Identities=16% Similarity=0.181 Sum_probs=223.4
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC-Cc
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SI 190 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p-~~ 190 (832)
.+|+|||.+++..++. +.+.|+..+||+|||+.++..+..+. ...+.+|||+|. .++.||.+++.++++ ++
T Consensus 20 ~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 4789999999988775 67899999999999996665554444 234689999997 788999999999986 67
Q ss_pred eEEEEcCChhHH--HHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCC-------------hhhH
Q 003311 191 AAVVYDGRPDER--KAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN-------------HECA 255 (832)
Q Consensus 191 ~v~~~~g~~~~r--~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN-------------~~sk 255 (832)
.+..+.|..... ......+.. +.++|+|+|++.+......+....+++|||||||++.. ....
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l~~--~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~ 170 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSFEE--DDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 170 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHH--TCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHH
T ss_pred eEEEEECCCChhhHHHHHHHhhc--CCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHH
Confidence 888888865432 122222222 46899999999998777667777899999999998632 1122
Q ss_pred -HHHHHHcc------------ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHH
Q 003311 256 -LAKTISGY------------QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQ 322 (832)
Q Consensus 256 -~~kal~~l------------~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~ 322 (832)
+...+..+ .....+++||||....+...+. ...+......
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~----------------~~~~~~~~~~----------- 223 (414)
T 3oiy_A 171 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF----------------RDLLNFTVGR----------- 223 (414)
T ss_dssp HHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHH----------------HHHHSCCSSC-----------
T ss_pred HHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHH----------------HHhhccCcCc-----------
Confidence 33333333 4567899999976554332110 0000000000
Q ss_pred HHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhC
Q 003311 323 LLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCN 402 (832)
Q Consensus 323 ~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cn 402 (832)
....+......+.
T Consensus 224 -----------------------~~~~~~~i~~~~~-------------------------------------------- 236 (414)
T 3oiy_A 224 -----------------------LVSVARNITHVRI-------------------------------------------- 236 (414)
T ss_dssp -----------------------CCCCCCSEEEEEE--------------------------------------------
T ss_pred -----------------------cccccccchheee--------------------------------------------
Confidence 0000111111110
Q ss_pred CCccccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEE-EEcCCCCHHHHHH
Q 003311 403 HPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFL-RLDGSTKTEERGT 481 (832)
Q Consensus 403 hP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~-rldG~ts~~eR~~ 481 (832)
...|...|..++.. .+.++||||+....++.+..+|...|+.+. .++|. +|.
T Consensus 237 -------------------~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~- 289 (414)
T 3oiy_A 237 -------------------SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN- 289 (414)
T ss_dssp -------------------SSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH-
T ss_pred -------------------ccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH-
Confidence 01234445555555 358999999999999999999999999998 89984 444
Q ss_pred HHHhhcCCCCCceEEEEe----ccccccccCccc-CCeEEEeCCC--CChhhHHHHhhhccccCCc--CcEEEEEEEeCC
Q 003311 482 LLKQFNAPDSPYFMFLLS----TRAGGLGLNLQT-ADTVIIFDSD--WNPQMDQQAEDRAHRIGQK--KEVRVFVLVSVG 552 (832)
Q Consensus 482 ~i~~Fn~~~~~~~v~LlS----t~agg~GLNL~~-ad~VI~~D~~--wNp~~~~QAigRahRiGQ~--k~V~V~rLit~~ 552 (832)
++.|+.+..+ +|++ |.++++|||++. +++||+||+| +++..|.|++||++|.|+. +...++.|+
T Consensus 290 -~~~f~~g~~~---vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--- 362 (414)
T 3oiy_A 290 -FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--- 362 (414)
T ss_dssp -HHHHHTTSCS---EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC---
T ss_pred -HHHHhCCCCe---EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE---
Confidence 9999998766 5777 999999999999 9999999999 9999999999999999986 567777777
Q ss_pred CHHHHHHHHHHHHHH
Q 003311 553 SIEEVILERAKQKMG 567 (832)
Q Consensus 553 siEe~Il~~~~~K~~ 567 (832)
-|..++..+++.+.
T Consensus 363 -~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 363 -EDEEIFESLKTRLL 376 (414)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHhc
Confidence 24455555554443
No 28
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=2.8e-29 Score=281.69 Aligned_cols=329 Identities=16% Similarity=0.208 Sum_probs=222.1
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC---C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~---p 188 (832)
..|+|||.+++..++.. .+.+.|++.+||+|||++++..+...+......+.+|||||. .++.||.+.+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 47999999999888751 247889999999999999866655444444445589999997 57788877777764 5
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH---HhhcCceEEEEeCCcccCC---hhhHHHHHHHc
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKN---HECALAKTISG 262 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~---L~~~~w~~vIiDEaHriKN---~~sk~~kal~~ 262 (832)
...+....|....... .....+|+|+|++.+...... +....+++|||||||++.. ........+..
T Consensus 124 ~~~~~~~~~~~~~~~~-------~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~ 196 (412)
T 3fht_A 124 ELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 196 (412)
T ss_dssp TCCEEEECTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHT
T ss_pred cceEEEeecCcchhhh-------hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhh
Confidence 6667666654332111 114578999999999765422 2224689999999999843 22233333344
Q ss_pred cc-cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhh
Q 003311 263 YQ-IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 341 (832)
Q Consensus 263 l~-~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~ 341 (832)
+. ....+++||||-. +++.++....+ .+. .+...
T Consensus 197 ~~~~~~~i~~SAT~~~----~~~~~~~~~~~--------------~~~---------------------------~~~~~ 231 (412)
T 3fht_A 197 LPRNCQMLLFSATFED----SVWKFAQKVVP--------------DPN---------------------------VIKLK 231 (412)
T ss_dssp SCTTCEEEEEESCCCH----HHHHHHHHHSS--------------SCE---------------------------EECCC
T ss_pred CCCCceEEEEEeecCH----HHHHHHHHhcC--------------CCe---------------------------EEeec
Confidence 43 4578999999842 22221111110 000 00000
Q ss_pred HhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHh
Q 003311 342 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIR 421 (832)
Q Consensus 342 k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~ 421 (832)
. .....+......+.+..
T Consensus 232 -~-~~~~~~~~~~~~~~~~~------------------------------------------------------------ 249 (412)
T 3fht_A 232 -R-EEETLDTIKQYYVLCSS------------------------------------------------------------ 249 (412)
T ss_dssp -G-GGSSCTTEEEEEEECSS------------------------------------------------------------
T ss_pred -c-ccccccCceEEEEEcCC------------------------------------------------------------
Confidence 0 00001111111111110
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
...|+..|..++... .+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+.+... +|++|.
T Consensus 250 ~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~ 324 (412)
T 3fht_A 250 RDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK---VLVTTN 324 (412)
T ss_dssp HHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS---EEEECG
T ss_pred hHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc---EEEEcC
Confidence 112444555555443 467999999999999999999999999999999999999999999999988766 799999
Q ss_pred ccccccCcccCCeEEEeCCCCCh------hhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHH
Q 003311 502 AGGLGLNLQTADTVIIFDSDWNP------QMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 565 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~wNp------~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K 565 (832)
++++|||++.+++||+||+||++ ..+.|++||++|.|+.. .++.|+.. .-+..++....++
T Consensus 325 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~-~~~~~~~~~i~~~ 391 (412)
T 3fht_A 325 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG--LAVNMVDS-KHSMNILNRIQEH 391 (412)
T ss_dssp GGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCE--EEEEEECS-HHHHHHHHHHHHH
T ss_pred ccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCc--eEEEEEcC-hhhHHHHHHHHHH
Confidence 99999999999999999999876 69999999999999654 44555543 2345555555443
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=3.7e-29 Score=291.63 Aligned_cols=303 Identities=20% Similarity=0.238 Sum_probs=220.7
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 191 (832)
..|+|+|.+++..++. +.++++..+||+|||+.++..+. .. .+.+|||+|. +++.||...+..+. +.
T Consensus 24 ~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l--~~----~g~~lvi~P~~aL~~q~~~~l~~~g--i~ 91 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPAL--LL----NGLTVVVSPLISLMKDQVDQLQANG--VA 91 (523)
T ss_dssp SSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHH--HS----SSEEEEECSCHHHHHHHHHHHHHTT--CC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHH--Hh----CCCEEEECChHHHHHHHHHHHHHcC--Cc
Confidence 4789999999998885 77899999999999987643332 11 3689999997 78899999999874 45
Q ss_pred EEEEcCChh--HHHHHHHHHHhhcCCccEEecCHHHHHHh--HHHHhhcCceEEEEeCCcccCChhh-------HHHHHH
Q 003311 192 AVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMRD--RQYLKKVQWIYMIVDEGHRLKNHEC-------ALAKTI 260 (832)
Q Consensus 192 v~~~~g~~~--~r~~~~~~~~~~~~~~dVvItTye~l~~d--~~~L~~~~w~~vIiDEaHriKN~~s-------k~~kal 260 (832)
+..+.+... ........... +.++++++|++.+... ...+....+.+|||||||++...+. .+....
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~--~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~ 169 (523)
T 1oyw_A 92 AACLNSTQTREQQLEVMTGCRT--GQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLR 169 (523)
T ss_dssp EEEECTTSCHHHHHHHHHHHHH--TCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHH
Confidence 555555432 22222222222 6789999999998643 3445567899999999999965431 222233
Q ss_pred HccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhh
Q 003311 261 SGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRR 340 (832)
Q Consensus 261 ~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR 340 (832)
..++...+++|||||......++...+.+-.|.++.. .+
T Consensus 170 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------~~------------------------------- 208 (523)
T 1oyw_A 170 QRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS----------SF------------------------------- 208 (523)
T ss_dssp HHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC----------CC-------------------------------
T ss_pred HhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC----------CC-------------------------------
Confidence 4556678999999997655555555554322211100 00
Q ss_pred hHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHH
Q 003311 341 KKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEII 420 (832)
Q Consensus 341 ~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~ 420 (832)
..|.. .+.+. +
T Consensus 209 -------~r~~l-~~~v~-~------------------------------------------------------------ 219 (523)
T 1oyw_A 209 -------DRPNI-RYMLM-E------------------------------------------------------------ 219 (523)
T ss_dssp -------CCTTE-EEEEE-E------------------------------------------------------------
T ss_pred -------CCCce-EEEEE-e------------------------------------------------------------
Confidence 00111 11110 0
Q ss_pred hhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 003311 421 RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 500 (832)
Q Consensus 421 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt 500 (832)
...++..|.+++... .+.++||||.....++.+...|...|+.+..+||+++.++|..+++.|..+... +|++|
T Consensus 220 -~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~---vlVaT 293 (523)
T 1oyw_A 220 -KFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ---IVVAT 293 (523)
T ss_dssp -CSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEC
T ss_pred -CCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEEe
Confidence 012233344444432 578999999999999999999999999999999999999999999999998766 79999
Q ss_pred cccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEE
Q 003311 501 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRV 545 (832)
Q Consensus 501 ~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V 545 (832)
.++|+|||++.++.||+|++|+++..|.|++||++|.|+...+.+
T Consensus 294 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 294 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp TTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred chhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 999999999999999999999999999999999999998765444
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.96 E-value=4.4e-28 Score=286.01 Aligned_cols=311 Identities=15% Similarity=0.161 Sum_probs=217.6
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 191 (832)
..|+|+|.+++..++. +.++|+..+||+|||+..+..+. . ..+.+|||+|. +|+.||.+.+.++ ++.
T Consensus 43 ~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal--~----~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPAL--C----SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHH--T----SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHH--H----cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 4899999999998886 78899999999999987644332 1 24689999997 8889999999998 456
Q ss_pred EEEEcCChh--HHHHHHHHHHhhcCCccEEecCHHHHHH---hHHHHh----hcCceEEEEeCCcccCChh-------hH
Q 003311 192 AVVYDGRPD--ERKAMREEFFSERGRFNVLITHYDLIMR---DRQYLK----KVQWIYMIVDEGHRLKNHE-------CA 255 (832)
Q Consensus 192 v~~~~g~~~--~r~~~~~~~~~~~~~~dVvItTye~l~~---d~~~L~----~~~w~~vIiDEaHriKN~~-------sk 255 (832)
+..+.|... .+......+....+.++|+++|++.+.. ....+. ...+.+|||||||++...+ ..
T Consensus 111 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~ 190 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKA 190 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGG
T ss_pred EEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHH
Confidence 666666432 2222323332223688999999998853 222222 3378999999999986533 12
Q ss_pred HHHHHHccccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhh
Q 003311 256 LAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRP 335 (832)
Q Consensus 256 ~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~p 335 (832)
+......++...+++|||||-.....++...+..-.+..+.. .
T Consensus 191 l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~----------~--------------------------- 233 (591)
T 2v1x_A 191 LGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA----------S--------------------------- 233 (591)
T ss_dssp GGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC----------C---------------------------
T ss_pred HHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec----------C---------------------------
Confidence 223334556778999999995433333333332211100000 0
Q ss_pred hhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchh
Q 003311 336 FILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWR 415 (832)
Q Consensus 336 fllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~ 415 (832)
...|.....+...+-
T Consensus 234 -----------~~r~nl~~~v~~~~~------------------------------------------------------ 248 (591)
T 2v1x_A 234 -----------FNRPNLYYEVRQKPS------------------------------------------------------ 248 (591)
T ss_dssp -----------CCCTTEEEEEEECCS------------------------------------------------------
T ss_pred -----------CCCcccEEEEEeCCC------------------------------------------------------
Confidence 001111111110000
Q ss_pred hHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceE
Q 003311 416 KEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFM 495 (832)
Q Consensus 416 ~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v 495 (832)
....++..|.+++... ..+.++||||.....++.+...|...|+.+..+||+++.++|..+++.|..+...
T Consensus 249 -----~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~--- 319 (591)
T 2v1x_A 249 -----NTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ--- 319 (591)
T ss_dssp -----SHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS---
T ss_pred -----cHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe---
Confidence 0001223333444322 2578999999999999999999999999999999999999999999999998766
Q ss_pred EEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEE
Q 003311 496 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 496 ~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
+|++|.++|+|||++.++.||+|++|+++..|.|++|||+|.|+...+.++
T Consensus 320 VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 320 VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 799999999999999999999999999999999999999999986655544
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=1.7e-27 Score=281.26 Aligned_cols=337 Identities=20% Similarity=0.218 Sum_probs=218.7
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC----CCCCEEEEeCC-CchHHHHHHHHhhC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG----VTGPHVIVAPK-AVLPNWINEFSTWA 187 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~----~~~p~LIV~P~-sll~qW~~E~~k~~ 187 (832)
..|+|||.+++..++. ..+.+.|+..+||+|||++++..+...+.... ....+|||||. .|+.||.+++.+++
T Consensus 42 ~~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~ 119 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 119 (579)
T ss_dssp SSCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHH
Confidence 3799999999988772 13567899999999999987665554443321 23478999997 78899999999864
Q ss_pred ------CCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHH---hhcCceEEEEeCCcccCChh--hHH
Q 003311 188 ------PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL---KKVQWIYMIVDEGHRLKNHE--CAL 256 (832)
Q Consensus 188 ------p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L---~~~~w~~vIiDEaHriKN~~--sk~ 256 (832)
+...+....|........... .. ..++|+|+|++.+....... .-..+.+|||||||++...+ ..+
T Consensus 120 ~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~--~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~ 196 (579)
T 3sqw_A 120 DMNYGLKKYACVSLVGGTDFRAAMNKM-NK--LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDL 196 (579)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHHHHH-HH--HCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred hhcccccceEEEEEECCccHHHHHHHH-hc--CCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHH
Confidence 345566666655443333221 11 46889999999997654332 22357899999999987643 222
Q ss_pred HHHHHcc---c-----cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHH
Q 003311 257 AKTISGY---Q-----IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRR 328 (832)
Q Consensus 257 ~kal~~l---~-----~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~ 328 (832)
...+..+ . ....+++|||+-. .+.++ +..+... +..
T Consensus 197 ~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~---~~~~l~~--------------~~~------------------ 240 (579)
T 3sqw_A 197 ETISGILNEKNSKSADNIKTLLFSATLDD-KVQKL---ANNIMNK--------------KEC------------------ 240 (579)
T ss_dssp HHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHH---TTTTCCS--------------SEE------------------
T ss_pred HHHHHHhhhhhcccccCceEEEEeccCCh-HHHHH---HHHHcCC--------------Cce------------------
Confidence 2222222 1 4478999999732 11111 1111000 000
Q ss_pred HHhhhhhhhhhhhHhHHhhcCCCCe-EEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccc
Q 003311 329 LHHVIRPFILRRKKDEVEKYLPGKS-QVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLF 407 (832)
Q Consensus 329 L~~~L~pfllRR~k~dv~~~LP~k~-e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~ 407 (832)
+.+...... ........ ...+.++-.
T Consensus 241 -------~~~~~~~~~-~~~~~~~i~~~~~~~~~~--------------------------------------------- 267 (579)
T 3sqw_A 241 -------LFLDTVDKN-EPEAHERIDQSVVISEKF--------------------------------------------- 267 (579)
T ss_dssp -------EEEESSCSS-SCSSCTTEEEEEEEESST---------------------------------------------
T ss_pred -------EEEeecCcc-ccccccccceEEEEecch---------------------------------------------
Confidence 000000000 00000000 111111100
Q ss_pred cccccchhhHHHHhhcchHHHHHHHHHhhh--hcCCeEEEEecchhHHHHHHHHHHhC---CCeEEEEcCCCCHHHHHHH
Q 003311 408 VGEYNMWRKEEIIRASGKFELLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYLKLN---DFKFLRLDGSTKTEERGTL 482 (832)
Q Consensus 408 ~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~---g~~~~rldG~ts~~eR~~~ 482 (832)
...+...+..++..+. ..+.++||||.....++.+...|... ++.+..+||.++..+|..+
T Consensus 268 --------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 268 --------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp --------------THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred --------------hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 0011122222222222 45789999999999999999999876 9999999999999999999
Q ss_pred HHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 003311 483 LKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 562 (832)
Q Consensus 483 i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~ 562 (832)
++.|+.+... +|++|.++++|||++.+++||+||+|+++..|.|++||++|.|+.. .++.|++.. |..++..+
T Consensus 334 ~~~F~~g~~~---vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~--e~~~~~~l 406 (579)
T 3sqw_A 334 VKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEG--SSVLFICKD--ELPFVREL 406 (579)
T ss_dssp HHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGG--GHHHHHHH
T ss_pred HHHhhcCCCe---EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCc--eEEEEEccc--HHHHHHHH
Confidence 9999987654 7999999999999999999999999999999999999999999654 455556654 44555554
Q ss_pred HH
Q 003311 563 KQ 564 (832)
Q Consensus 563 ~~ 564 (832)
..
T Consensus 407 ~~ 408 (579)
T 3sqw_A 407 ED 408 (579)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 32
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.95 E-value=3.5e-27 Score=277.12 Aligned_cols=337 Identities=20% Similarity=0.213 Sum_probs=216.8
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC----CCCCEEEEeCC-CchHHHHHHHHhhC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG----VTGPHVIVAPK-AVLPNWINEFSTWA 187 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~----~~~p~LIV~P~-sll~qW~~E~~k~~ 187 (832)
..|+|||.+++..++. ..+.+.|++.+||+|||++++..+...+.... ....+|||+|. .|+.||.+++.+++
T Consensus 93 ~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp SSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 3799999999988772 13567899999999999987665554443322 12478999997 78899999999863
Q ss_pred ------CCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHH---hhcCceEEEEeCCcccCChh--hHH
Q 003311 188 ------PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL---KKVQWIYMIVDEGHRLKNHE--CAL 256 (832)
Q Consensus 188 ------p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L---~~~~w~~vIiDEaHriKN~~--sk~ 256 (832)
+...+....|........... .. ..++|+|+|++.+....... .-..+.+|||||||++...+ ..+
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~--~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~ 247 (563)
T 3i5x_A 171 DMNYGLKKYACVSLVGGTDFRAAMNKM-NK--LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDL 247 (563)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHHHHH-HH--HCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred hhccccCceeEEEEECCcCHHHHHHHH-hc--CCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHH
Confidence 334566666654433332221 11 46799999999987654332 22357899999999986543 222
Q ss_pred HHHHHcc--------ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHH
Q 003311 257 AKTISGY--------QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRR 328 (832)
Q Consensus 257 ~kal~~l--------~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~ 328 (832)
...+..+ .....+++||||-. .+.++ +..+... +..
T Consensus 248 ~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~---~~~~~~~--------------~~~------------------ 291 (563)
T 3i5x_A 248 ETISGILNEKNSKSADNIKTLLFSATLDD-KVQKL---ANNIMNK--------------KEC------------------ 291 (563)
T ss_dssp HHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHH---TTTTCCS--------------SEE------------------
T ss_pred HHHHHhhhhccccCccCceEEEEEccCCH-HHHHH---HHHhcCC--------------Cce------------------
Confidence 2222222 13468999999832 11111 1111000 000
Q ss_pred HHhhhhhhhhhhhHhHHhhcCCCCe-EEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccc
Q 003311 329 LHHVIRPFILRRKKDEVEKYLPGKS-QVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLF 407 (832)
Q Consensus 329 L~~~L~pfllRR~k~dv~~~LP~k~-e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~ 407 (832)
+.+..... ......... ...+.++..
T Consensus 292 -------~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------------------------------------- 318 (563)
T 3i5x_A 292 -------LFLDTVDK-NEPEAHERIDQSVVISEKF--------------------------------------------- 318 (563)
T ss_dssp -------EEEESSCS-SSCSSCTTEEEEEEEESST---------------------------------------------
T ss_pred -------EEEeccCC-CCccccccCceEEEECchh---------------------------------------------
Confidence 00000000 000000000 111111100
Q ss_pred cccccchhhHHHHhhcchHHHHHHHHHhhh--hcCCeEEEEecchhHHHHHHHHHHhC---CCeEEEEcCCCCHHHHHHH
Q 003311 408 VGEYNMWRKEEIIRASGKFELLDRLLPKLR--KSGHRVLLFSQMTRLMDILEIYLKLN---DFKFLRLDGSTKTEERGTL 482 (832)
Q Consensus 408 ~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~---g~~~~rldG~ts~~eR~~~ 482 (832)
.......+..+...+. ..+.++||||.....++.+..+|... ++.+..+||+++..+|..+
T Consensus 319 --------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~ 384 (563)
T 3i5x_A 319 --------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 384 (563)
T ss_dssp --------------THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred --------------HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Confidence 0000111222222222 45789999999999999999999875 9999999999999999999
Q ss_pred HHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 003311 483 LKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 562 (832)
Q Consensus 483 i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~ 562 (832)
++.|+.+... +|++|.++++|||++.+++||+||+|+++..|.|++||++|.|+. -.++.|++.. |...+..+
T Consensus 385 ~~~f~~g~~~---vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~--g~~i~~~~~~--e~~~~~~l 457 (563)
T 3i5x_A 385 VKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKE--GSSVLFICKD--ELPFVREL 457 (563)
T ss_dssp HHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCC--EEEEEEEEGG--GHHHHHHH
T ss_pred HHHHhcCCCC---EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCC--ceEEEEEchh--HHHHHHHH
Confidence 9999987654 799999999999999999999999999999999999999999855 4555566654 44455544
Q ss_pred HH
Q 003311 563 KQ 564 (832)
Q Consensus 563 ~~ 564 (832)
..
T Consensus 458 ~~ 459 (563)
T 3i5x_A 458 ED 459 (563)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.95 E-value=9.3e-29 Score=287.46 Aligned_cols=316 Identities=15% Similarity=0.170 Sum_probs=192.8
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCceE
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAA 192 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~v 192 (832)
.|+|||.+++..++.. .+.+.|+..+||+|||++++..+...+......+.+|||||. .++.||.++|.++++...+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 6899999999877751 237889999999999999876666555444445689999997 5889999999999765433
Q ss_pred EEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCC---hhhHHHHHHHccc-cc
Q 003311 193 VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKN---HECALAKTISGYQ-IQ 266 (832)
Q Consensus 193 ~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN---~~sk~~kal~~l~-~~ 266 (832)
.+..+....... .....++|+|+|++.+...... +....+++|||||||++.. ........+..+. ..
T Consensus 219 ~~~~~~~~~~~~------~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~ 292 (508)
T 3fho_A 219 KTAFGIKDSVPK------GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNT 292 (508)
T ss_dssp CEEC----------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTC
T ss_pred eEEEEeCCcccc------cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCC
Confidence 332222111100 0114689999999998764321 2234689999999999864 2233333444454 45
Q ss_pred eEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHh
Q 003311 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVE 346 (832)
Q Consensus 267 ~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~ 346 (832)
..++|||||- +.+.++...+ .+ .+... ... ....
T Consensus 293 ~~i~lSAT~~-~~~~~~~~~~---~~--------------~~~~i----~~~-----------------------~~~~- 326 (508)
T 3fho_A 293 QIVLFSATFS-ERVEKYAERF---AP--------------NANEI----RLK-----------------------TEEL- 326 (508)
T ss_dssp EEEEEESCCS-THHHHHHHHH---ST--------------TCEEE----CCC-----------------------CCC--
T ss_pred eEEEEeCCCC-HHHHHHHHHh---cC--------------CCeEE----Eec-----------------------cccC-
Confidence 6799999983 2222221110 00 00000 000 0000
Q ss_pred hcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchH
Q 003311 347 KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKF 426 (832)
Q Consensus 347 ~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl 426 (832)
..+......+.+. ....|.
T Consensus 327 -~~~~~~~~~~~~~------------------------------------------------------------~~~~k~ 345 (508)
T 3fho_A 327 -SVEGIKQLYMDCQ------------------------------------------------------------SEEHKY 345 (508)
T ss_dssp ----CCCCEEEEC--------------------------------------------------------------CHHHH
T ss_pred -CcccceEEEEECC------------------------------------------------------------chHHHH
Confidence 0000000111110 012234
Q ss_pred HHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccc
Q 003311 427 ELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLG 506 (832)
Q Consensus 427 ~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~G 506 (832)
..+..++... .+.++||||+....++.+...|...++.+..++|+++..+|..+++.|+.+... +|++|.++++|
T Consensus 346 ~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~---VLVaT~~l~~G 420 (508)
T 3fho_A 346 NVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSK---VLVTTNVIARG 420 (508)
T ss_dssp HHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCC---CCEECC-----
T ss_pred HHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe---EEEeCChhhcC
Confidence 4455555443 467999999999999999999999999999999999999999999999988766 79999999999
Q ss_pred cCcccCCeEEEeCCC------CChhhHHHHhhhccccCCcCcEEEEEEEeC
Q 003311 507 LNLQTADTVIIFDSD------WNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551 (832)
Q Consensus 507 LNL~~ad~VI~~D~~------wNp~~~~QAigRahRiGQ~k~V~V~rLit~ 551 (832)
||++.+++||+||++ +++..+.|++||++|.|+...+. .|+..
T Consensus 421 iDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i--~l~~~ 469 (508)
T 3fho_A 421 IDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSI--NFVHD 469 (508)
T ss_dssp CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEE--EEECT
T ss_pred CCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEE--EEEeC
Confidence 999999999999999 78999999999999999655444 44543
No 34
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=1.4e-26 Score=291.37 Aligned_cols=309 Identities=18% Similarity=0.209 Sum_probs=218.4
Q ss_pred CCCCchHHHHHHHHHHHHhhccCC--CeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC
Q 003311 111 QGGELRAYQLEGLQWMLSLFNNNL--NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA 187 (832)
Q Consensus 111 ~~~~Lr~yQ~egl~wml~~~~~~~--~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~ 187 (832)
.+.+++|||.+++..++.....+. ++|++++||+|||++++..+...... .+.+|||||. .+..||.++|.+++
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt~~La~Q~~~~~~~~~ 676 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPTTLLAQQHYDNFRDRF 676 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEechHHHHHHHHHHHHHHh
Confidence 356889999999999998766555 78999999999999987555444332 3489999997 57789999999888
Q ss_pred CC--ceEEEEcCC--hhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc
Q 003311 188 PS--IAAVVYDGR--PDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY 263 (832)
Q Consensus 188 p~--~~v~~~~g~--~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l 263 (832)
+. +.+..+.|. ...+......+.. +..+|+|+|++.+.+. +.-.++++|||||||++.. .....+..+
T Consensus 677 ~~~~i~v~~l~~~~~~~~~~~~~~~l~~--g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~g~---~~~~~l~~l 748 (1151)
T 2eyq_A 677 ANWPVRIEMISRFRSAKEQTQILAEVAE--GKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFGV---RHKERIKAM 748 (1151)
T ss_dssp TTTTCCEEEESTTSCHHHHHHHHHHHHT--TCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSCH---HHHHHHHHH
T ss_pred hcCCCeEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHhCC---ccccccceEEEechHhcCh---HHHHHHHHh
Confidence 64 566666653 3333333333322 5789999999887542 3334789999999999743 334445444
Q ss_pred -ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhH
Q 003311 264 -QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKK 342 (832)
Q Consensus 264 -~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k 342 (832)
...+.++|||||+.+.+..... .+. .+.+
T Consensus 749 ~~~~~vl~lSATp~p~~l~~~~~---~~~------------------------------------------~~~~----- 778 (1151)
T 2eyq_A 749 RANVDILTLTATPIPRTLNMAMS---GMR------------------------------------------DLSI----- 778 (1151)
T ss_dssp HTTSEEEEEESSCCCHHHHHHHT---TTS------------------------------------------EEEE-----
T ss_pred cCCCCEEEEcCCCChhhHHHHHh---cCC------------------------------------------CceE-----
Confidence 3457899999997653321111 000 0000
Q ss_pred hHHhhcCCCCeE---EEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHH
Q 003311 343 DEVEKYLPGKSQ---VILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEI 419 (832)
Q Consensus 343 ~dv~~~LP~k~e---~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l 419 (832)
. ..|+... .....+.
T Consensus 779 ---i-~~~~~~r~~i~~~~~~~---------------------------------------------------------- 796 (1151)
T 2eyq_A 779 ---I-ATPPARRLAVKTFVREY---------------------------------------------------------- 796 (1151)
T ss_dssp ---C-CCCCCBCBCEEEEEEEC----------------------------------------------------------
T ss_pred ---E-ecCCCCccccEEEEecC----------------------------------------------------------
Confidence 0 0011000 0000000
Q ss_pred HhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 420 IRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 420 ~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
.+......++..+ ..|.+++|||+....++.+...|... ++.+..+||.++..+|.+++++|+++..+ +|
T Consensus 797 ----~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~---VL 868 (1151)
T 2eyq_A 797 ----DSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VL 868 (1151)
T ss_dssp ----CHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC---EE
T ss_pred ----CHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCc---EE
Confidence 0111122223332 35789999999999999999999776 89999999999999999999999987765 79
Q ss_pred EeccccccccCcccCCeEEEeCC-CCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 498 LSTRAGGLGLNLQTADTVIIFDS-DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 498 lSt~agg~GLNL~~ad~VI~~D~-~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
++|.++++|||++.+++||++++ .|++..+.|++||++|.|+. -++|.++...
T Consensus 869 VaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~--g~~~ll~~~~ 922 (1151)
T 2eyq_A 869 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ--AYAWLLTPHP 922 (1151)
T ss_dssp EESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBC--EEEEEEECCG
T ss_pred EECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCc--eEEEEEECCc
Confidence 99999999999999999999999 58999999999999999864 4455555543
No 35
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.9e-25 Score=275.66 Aligned_cols=351 Identities=16% Similarity=0.110 Sum_probs=223.0
Q ss_pred CCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCC
Q 003311 111 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS 189 (832)
Q Consensus 111 ~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~ 189 (832)
.+.+|+|||.+++..+.. +.+.|++.+||+|||+++...+...+.. .+++||++|. .+..||.++|.++++
T Consensus 83 ~~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp CSSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 346899999999998876 7889999999999999986655554443 3589999997 788999999999986
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCCh--hhHHHHHHHccc-
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTISGYQ- 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~--~sk~~kal~~l~- 264 (832)
.+.++.|..... ...+|+|+|++.+.+.... ..-..+.+|||||||++.+. .......+..++
T Consensus 155 -~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~ 222 (1010)
T 2xgj_A 155 -DVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 222 (1010)
T ss_dssp -CEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT
T ss_pred -CEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC
Confidence 566667754321 3578999999998764322 12236889999999999765 344445555554
Q ss_pred cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhH
Q 003311 265 IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDE 344 (832)
Q Consensus 265 ~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~d 344 (832)
..+.++||||+- +..++ ..|+...... |..+-.
T Consensus 223 ~~~il~LSATi~--n~~e~------------------a~~l~~~~~~-----------------------~~~vi~---- 255 (1010)
T 2xgj_A 223 KVRYVFLSATIP--NAMEF------------------AEWICKIHSQ-----------------------PCHIVY---- 255 (1010)
T ss_dssp TCEEEEEECCCT--THHHH------------------HHHHHHHHTS-----------------------CEEEEE----
T ss_pred CCeEEEEcCCCC--CHHHH------------------HHHHHhhcCC-----------------------CeEEEe----
Confidence 467899999952 23333 3333210000 000000
Q ss_pred HhhcCCCCeEEEEEc-C---------C-CHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccc
Q 003311 345 VEKYLPGKSQVILKC-D---------M-SAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNM 413 (832)
Q Consensus 345 v~~~LP~k~e~~v~~-~---------m-s~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~ 413 (832)
...-|......+.. . . ......-|.......... ....|.-. .....
T Consensus 256 -~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------------~~~~~~~~-~~~g~ 313 (1010)
T 2xgj_A 256 -TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ--------------------IGDDPNST-DSRGK 313 (1010)
T ss_dssp -ECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------------
T ss_pred -cCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh--------------------hccccccc-ccccc
Confidence 00011111111110 0 0 000000011110000000 00000000 00000
Q ss_pred hhhHHHHhh-cc-hHHHHHHHHHhhhh-cCCeEEEEecchhHHHHHHHHHHhCCCe------------------------
Q 003311 414 WRKEEIIRA-SG-KFELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDFK------------------------ 466 (832)
Q Consensus 414 ~~~~~l~~~-S~-Kl~~L~~lL~~l~~-~g~kvLIFsq~~~~ldiL~~~L~~~g~~------------------------ 466 (832)
+....-... .+ ....+..++..+.. .+.++||||.....++.+...|...++.
T Consensus 314 ~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~ 393 (1010)
T 2xgj_A 314 KGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDR 393 (1010)
T ss_dssp ---------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGT
T ss_pred cccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhh
Confidence 000000000 00 02233444444443 3458999999999999998888665442
Q ss_pred ---------------EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE----eCC----CCC
Q 003311 467 ---------------FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FDS----DWN 523 (832)
Q Consensus 467 ---------------~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~----~D~----~wN 523 (832)
+..+||++++.+|..+++.|+.+... +|++|.++++|||++.+++||. ||. ||+
T Consensus 394 ~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s 470 (1010)
T 2xgj_A 394 ELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVS 470 (1010)
T ss_dssp TCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECC
T ss_pred cchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCC
Confidence 78899999999999999999998766 7999999999999999999999 999 999
Q ss_pred hhhHHHHhhhccccCCcCcEEEEEEEeCCC
Q 003311 524 PQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 553 (832)
Q Consensus 524 p~~~~QAigRahRiGQ~k~V~V~rLit~~s 553 (832)
|..|.|++|||+|.|+.....+|.|++...
T Consensus 471 ~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 471 GGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp HHHHHHHHTTBCCTTTCSSEEEEEEECSCC
T ss_pred HHHHhHhhhhcccCCCCCceEEEEEECCCC
Confidence 999999999999999998999999998764
No 36
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.94 E-value=1.3e-27 Score=275.34 Aligned_cols=316 Identities=16% Similarity=0.212 Sum_probs=107.3
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhh---CC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTW---AP 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~---~p 188 (832)
..|+|+|.+++..++. ..+.+.|++.+||+|||++++..+...+........+|||+|. .+..||...+.++ ++
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 4789999999988875 1247789999999999999765554443333334479999997 6778886666554 56
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH---HhhcCceEEEEeCCcccCC---hhhHHHHHHHc
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKN---HECALAKTISG 262 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~---L~~~~w~~vIiDEaHriKN---~~sk~~kal~~ 262 (832)
.+.+.+..+....... .....+|+|+|++.+...... +...++.+|||||||++.. ........+..
T Consensus 191 ~~~~~~~~~~~~~~~~-------~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~ 263 (479)
T 3fmp_B 191 ELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 263 (479)
T ss_dssp TCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTT
T ss_pred CceEEEEeCCcccccc-------ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhh
Confidence 6676666654321110 014568999999999765422 2224688999999999853 22233333333
Q ss_pred c-ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhh
Q 003311 263 Y-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRK 341 (832)
Q Consensus 263 l-~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~ 341 (832)
+ .....+++||||-. +++.+....
T Consensus 264 ~~~~~~~i~~SAT~~~----~~~~~~~~~--------------------------------------------------- 288 (479)
T 3fmp_B 264 LPRNCQMLLFSATFED----SVWKFAQKV--------------------------------------------------- 288 (479)
T ss_dssp SCTTSEEEEEESCCCH----HHHHHHHHH---------------------------------------------------
T ss_pred CCccceEEEEeCCCCH----HHHHHHHHH---------------------------------------------------
Confidence 3 34578999999842 222211111
Q ss_pred HhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHh
Q 003311 342 KDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIR 421 (832)
Q Consensus 342 k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~ 421 (832)
+|......+... ... ... +.+ .++.. ..
T Consensus 289 -------~~~~~~i~~~~~----~~~----------------------~~~----~~~----~~~~~-----------~~ 316 (479)
T 3fmp_B 289 -------VPDPNVIKLKRE----EET----------------------LDT----IKQ----YYVLC-----------SS 316 (479)
T ss_dssp -------SSSEEEEEEC---------------------------------------------------------------
T ss_pred -------cCCCeEEecccc----ccC----------------------cCC----ceE----EEEEe-----------CC
Confidence 111111111000 000 000 000 00000 00
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
...|+..|..++... .+.++||||+....++.+...|...++.+..++|+++..+|..+++.|+.+... +|++|.
T Consensus 317 ~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~---iLv~T~ 391 (479)
T 3fmp_B 317 RDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK---VLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCc---EEEEcc
Confidence 122344444444432 356899999999999999999999999999999999999999999999987765 799999
Q ss_pred ccccccCcccCCeEEEeCCCCCh------hhHHHHhhhccccCCcCcEEEEEEEeC
Q 003311 502 AGGLGLNLQTADTVIIFDSDWNP------QMDQQAEDRAHRIGQKKEVRVFVLVSV 551 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~wNp------~~~~QAigRahRiGQ~k~V~V~rLit~ 551 (832)
++++|||++.+++||+||+||++ ..|.|++||++|.|+... ++.|+..
T Consensus 392 ~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~--~i~~~~~ 445 (479)
T 3fmp_B 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL--AVNMVDS 445 (479)
T ss_dssp --------------------------------------------------------
T ss_pred ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCce--EEEEEcC
Confidence 99999999999999999999876 699999999999986544 4444443
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.93 E-value=1.8e-26 Score=278.66 Aligned_cols=307 Identities=17% Similarity=0.205 Sum_probs=208.4
Q ss_pred CCCchHHHHHHHHHHHHhhccC--CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNN--LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 188 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~--~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 188 (832)
+.+|+|+|.+++..+......+ .+.|++.+||+|||++++..+...+..+ ..+||+||. .+..||.++|.++++
T Consensus 366 pf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~Q~~~~l~~~~~ 442 (780)
T 1gm5_A 366 PFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAIQHYRRTVESFS 442 (780)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhh
Confidence 3589999999999998765443 4789999999999999887766655542 479999998 678899999999986
Q ss_pred --CceEEEEcCChhH--HHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHH-cc
Q 003311 189 --SIAAVVYDGRPDE--RKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS-GY 263 (832)
Q Consensus 189 --~~~v~~~~g~~~~--r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~-~l 263 (832)
++.+.+++|.... +......+.. +.++|+|+|++.+... +.-.++.+|||||+|++.... ...+. ..
T Consensus 443 ~~gi~v~~l~G~~~~~~r~~~~~~l~~--g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q---r~~l~~~~ 514 (780)
T 1gm5_A 443 KFNIHVALLIGATTPSEKEKIKSGLRN--GQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ---REALMNKG 514 (780)
T ss_dssp CSSCCEEECCSSSCHHHHHHHHHHHHS--SCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC--------CCCCSSS
T ss_pred hcCceEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH---HHHHHHhC
Confidence 5778888876433 3223333322 5789999999987542 333468899999999984321 11121 12
Q ss_pred ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHh
Q 003311 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343 (832)
Q Consensus 264 ~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~ 343 (832)
...+.++|||||+...+. +..+-..+ .
T Consensus 515 ~~~~vL~mSATp~p~tl~----~~~~g~~~-------------------------------------------------~ 541 (780)
T 1gm5_A 515 KMVDTLVMSATPIPRSMA----LAFYGDLD-------------------------------------------------V 541 (780)
T ss_dssp SCCCEEEEESSCCCHHHH----HHHTCCSS-------------------------------------------------C
T ss_pred CCCCEEEEeCCCCHHHHH----HHHhCCcc-------------------------------------------------e
Confidence 456889999999754322 11110000 0
Q ss_pred HHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhc
Q 003311 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 423 (832)
Q Consensus 344 dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S 423 (832)
.+...+|+....+...-. ..
T Consensus 542 s~i~~~p~~r~~i~~~~~------------------------------------------------------------~~ 561 (780)
T 1gm5_A 542 TVIDEMPPGRKEVQTMLV------------------------------------------------------------PM 561 (780)
T ss_dssp EEECCCCSSCCCCEECCC------------------------------------------------------------CS
T ss_pred eeeeccCCCCcceEEEEe------------------------------------------------------------cc
Confidence 000112221100000000 00
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecch--------hHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMT--------RLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSP 492 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~--------~~ldiL~~~L~~---~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~ 492 (832)
.+...+...+.+....|++++|||... ..++.+...|.. .++.+..+||+++.++|..+++.|+++...
T Consensus 562 ~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ 641 (780)
T 1gm5_A 562 DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 641 (780)
T ss_dssp STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS
T ss_pred chHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe
Confidence 111223333333445688899999864 345667777766 578999999999999999999999998766
Q ss_pred ceEEEEeccccccccCcccCCeEEEeCCCC-ChhhHHHHhhhccccCCcCcEEE
Q 003311 493 YFMFLLSTRAGGLGLNLQTADTVIIFDSDW-NPQMDQQAEDRAHRIGQKKEVRV 545 (832)
Q Consensus 493 ~~v~LlSt~agg~GLNL~~ad~VI~~D~~w-Np~~~~QAigRahRiGQ~k~V~V 545 (832)
+|++|.++++|||++.+++||++|+++ +...+.|++||++|.|+...|.+
T Consensus 642 ---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 642 ---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFL 692 (780)
T ss_dssp ---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEEC
T ss_pred ---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEE
Confidence 799999999999999999999999985 78899999999999997655443
No 38
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.92 E-value=2.8e-24 Score=259.76 Aligned_cols=327 Identities=17% Similarity=0.158 Sum_probs=213.9
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCC-chHHHHHHHHhhCC-Cce
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA-VLPNWINEFSTWAP-SIA 191 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p-~~~ 191 (832)
+|+|+|.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|.. +..||..++.++.+ +..
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 8999999999752 33478899999999999999865554433322 35899999975 88999999976654 567
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHh--hcCceEEEEeCCcccCC--hhhHHHHHHHccccce
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK--KVQWIYMIVDEGHRLKN--HECALAKTISGYQIQR 267 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~--~~~w~~vIiDEaHriKN--~~sk~~kal~~l~~~~ 267 (832)
+....|....... .....+|+|+|++.+......-. -.++++|||||+|.+.+ ....+...+..+...+
T Consensus 105 v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ 177 (715)
T 2va8_A 105 VAMTSGDYDTDDA-------WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRN 177 (715)
T ss_dssp EEECCSCSSSCCG-------GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSE
T ss_pred EEEEeCCCCCchh-------hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCc
Confidence 7777775432111 01367899999998876433211 12578999999999864 3334444555666788
Q ss_pred EEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHhh
Q 003311 268 RLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEK 347 (832)
Q Consensus 268 rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~~ 347 (832)
.++|||||- +..++. +|+..+.-.. -.+|+-+.... ...
T Consensus 178 ii~lSATl~--n~~~~~------------------~~l~~~~~~~-------------------~~r~~~l~~~~--~~~ 216 (715)
T 2va8_A 178 LLALSATIS--NYKQIA------------------KWLGAEPVAT-------------------NWRPVPLIEGV--IYP 216 (715)
T ss_dssp EEEEESCCT--THHHHH------------------HHHTCEEEEC-------------------CCCSSCEEEEE--EEE
T ss_pred EEEEcCCCC--CHHHHH------------------HHhCCCccCC-------------------CCCCCCceEEE--Eec
Confidence 999999983 233333 3332211000 00010000000 000
Q ss_pred cCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHH
Q 003311 348 YLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFE 427 (832)
Q Consensus 348 ~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~ 427 (832)
..+.....+.+.+. . . .... ....+..
T Consensus 217 ~~~~~~~~~~~~~~----------------------~--~---------------------~~~~--------~~~~~~~ 243 (715)
T 2va8_A 217 ERKKKEYNVIFKDN----------------------T--T---------------------KKVH--------GDDAIIA 243 (715)
T ss_dssp CSSTTEEEEEETTS----------------------C--E---------------------EEEE--------SSSHHHH
T ss_pred CCcccceeeecCcc----------------------h--h---------------------hhcc--------cchHHHH
Confidence 00000000000000 0 0 0000 0011222
Q ss_pred HHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCC------------------------------------CeEEEEc
Q 003311 428 LLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLND------------------------------------FKFLRLD 471 (832)
Q Consensus 428 ~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g------------------------------------~~~~rld 471 (832)
.+.++ ...++++|||+.....++.+...|.... ..+..+|
T Consensus 244 ~~~~~----~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h 319 (715)
T 2va8_A 244 YTLDS----LSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHH 319 (715)
T ss_dssp HHHHH----HTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEEC
T ss_pred HHHHH----HhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEEC
Confidence 23332 3467899999999999998888887532 2488899
Q ss_pred CCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE----eC-------CCCChhhHHHHhhhccccCCc
Q 003311 472 GSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FD-------SDWNPQMDQQAEDRAHRIGQK 540 (832)
Q Consensus 472 G~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~----~D-------~~wNp~~~~QAigRahRiGQ~ 540 (832)
|+++.++|..+.+.|..+... +|++|.+++.|||++.+++||. || .|+++..+.|++|||+|.|+.
T Consensus 320 ~~l~~~~r~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~ 396 (715)
T 2va8_A 320 AGLSKALRDLIEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD 396 (715)
T ss_dssp TTSCHHHHHHHHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTC
T ss_pred CCCCHHHHHHHHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 999999999999999988765 7999999999999999999998 99 899999999999999999999
Q ss_pred CcEEEEEEEeCCC
Q 003311 541 KEVRVFVLVSVGS 553 (832)
Q Consensus 541 k~V~V~rLit~~s 553 (832)
.+..+|+|++...
T Consensus 397 ~~G~~~~l~~~~~ 409 (715)
T 2va8_A 397 QIGESIVVVRDKE 409 (715)
T ss_dssp SCEEEEEECSCGG
T ss_pred CCceEEEEeCCch
Confidence 9999999987765
No 39
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.1e-24 Score=267.66 Aligned_cols=366 Identities=16% Similarity=0.128 Sum_probs=219.0
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 191 (832)
.+|+|||.+++..+. ++.+.|++.+||+|||++++..+...+.. .+.+||++|. .+..||.++|.+++. .
T Consensus 183 f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~PtraLa~Q~~~~l~~~~~--~ 253 (1108)
T 3l9o_A 183 FTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG--D 253 (1108)
T ss_dssp SCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHTS--S
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHHHHHHHHHHHHHHhC--C
Confidence 589999999998764 47889999999999999987666655543 3579999997 688999999999987 4
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCChh--hHHHHHHHccc-cc
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNHE--CALAKTISGYQ-IQ 266 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~~--sk~~kal~~l~-~~ 266 (832)
+.++.|.... ....+|+|+|++.+.+.... ..-.++.+|||||||++.... ..+...+..+. ..
T Consensus 254 VglltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~ 322 (1108)
T 3l9o_A 254 VGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 322 (1108)
T ss_dssp EEEECSSCBC-----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTS
T ss_pred ccEEeCcccc-----------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCc
Confidence 5556665431 15688999999988764322 111257899999999997643 33444445553 46
Q ss_pred eEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHh
Q 003311 267 RRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVE 346 (832)
Q Consensus 267 ~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~ 346 (832)
+.++||||+ .|. .++..++..+... +..... . -.+|.-+... +.
T Consensus 323 qvl~lSATi-pn~-~e~a~~l~~~~~~--------------~~~vi~----~-------------~~rp~pl~~~---~~ 366 (1108)
T 3l9o_A 323 RYVFLSATI-PNA-MEFAEWICKIHSQ--------------PCHIVY----T-------------NFRPTPLQHY---LF 366 (1108)
T ss_dssp EEEEEECSC-SSC-HHHHHHHHHHTCS--------------CEEEEE----E-------------CCCSSCEEEE---EE
T ss_pred eEEEEcCCC-CCH-HHHHHHHHhhcCC--------------CeEEEe----c-------------CCCcccceEE---Ee
Confidence 789999994 333 3333332221110 000000 0 0000000000 00
Q ss_pred hcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchH
Q 003311 347 KYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKF 426 (832)
Q Consensus 347 ~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl 426 (832)
. .+......+.-.........|................... .... .++ ..... .......
T Consensus 367 ~-~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~---~~~-------------~~~~~--~~~~~~~ 426 (1108)
T 3l9o_A 367 P-AHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTD-SRGK---KGQ-------------TYKGG--SAKGDAK 426 (1108)
T ss_dssp E-TTSSCCEEEEETTTEECHHHHHHHHTTC------------------------------------------------CH
T ss_pred e-cCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccc-cccc---ccc-------------ccccc--cccccch
Confidence 0 0000000010011111111111111110000000000000 0000 000 00000 0000013
Q ss_pred HHHHHHHHhhhh-cCCeEEEEecchhHHHHHHHHHHhCCCe---------------------------------------
Q 003311 427 ELLDRLLPKLRK-SGHRVLLFSQMTRLMDILEIYLKLNDFK--------------------------------------- 466 (832)
Q Consensus 427 ~~L~~lL~~l~~-~g~kvLIFsq~~~~ldiL~~~L~~~g~~--------------------------------------- 466 (832)
..+..++..+.. .+.++||||.....++.+...|...++.
T Consensus 427 ~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 506 (1108)
T 3l9o_A 427 GDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRG 506 (1108)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHT
T ss_pred hHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcC
Confidence 334445554443 3569999999999999998887543222
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCCCCChh--------hHHHHhhhccccC
Q 003311 467 FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQ--------MDQQAEDRAHRIG 538 (832)
Q Consensus 467 ~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~~wNp~--------~~~QAigRahRiG 538 (832)
+..+||++++.+|..+++.|..+... +|++|.++++|||++.+++||.++.+|++. .|.|++|||+|.|
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred eeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 78899999999999999999998776 799999999999999999999888877665 4999999999999
Q ss_pred CcCcEEEEEEEeCCCHHHH
Q 003311 539 QKKEVRVFVLVSVGSIEEV 557 (832)
Q Consensus 539 Q~k~V~V~rLit~~siEe~ 557 (832)
+.....+|.++.....+..
T Consensus 584 ~d~~G~~ill~~~~~~~~~ 602 (1108)
T 3l9o_A 584 LDDRGIVIMMIDEKMEPQV 602 (1108)
T ss_dssp SCSSEEEEEEECCCCCHHH
T ss_pred CCCceEEEEEecCCcCHHH
Confidence 9999999999988754433
No 40
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.92 E-value=2.1e-24 Score=261.12 Aligned_cols=320 Identities=18% Similarity=0.179 Sum_probs=218.5
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHH-HHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC-Cc
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTI-ALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SI 190 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqai-ali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p-~~ 190 (832)
+|+|||.+++..+ +..+.+.|++.+||+|||+++. +++..+... .+.+|||+|. .+..||..++.++.+ ++
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raLa~q~~~~~~~l~~~g~ 96 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKALAEEKFQEFQDWEKIGL 96 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGGHHHHHHHTGGGGGGTC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHHHHHHHHHHHHHhcCC
Confidence 7999999999752 2347889999999999999984 444444433 3589999996 788999999987654 57
Q ss_pred eEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHh--hcCceEEEEeCCcccCC--hhhHHHHHHHccc-c
Q 003311 191 AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK--KVQWIYMIVDEGHRLKN--HECALAKTISGYQ-I 265 (832)
Q Consensus 191 ~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~--~~~w~~vIiDEaHriKN--~~sk~~kal~~l~-~ 265 (832)
.+..+.|....... .....+|+|+|++.+......-. -.++++|||||+|++.. ....+...+..+. .
T Consensus 97 ~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~ 169 (720)
T 2zj8_A 97 RVAMATGDYDSKDE-------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGK 169 (720)
T ss_dssp CEEEECSCSSCCCG-------GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTT
T ss_pred EEEEecCCCCcccc-------ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcC
Confidence 78888875432111 01468899999999865433211 12578999999999964 3344444445554 5
Q ss_pred ceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHH
Q 003311 266 QRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEV 345 (832)
Q Consensus 266 ~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv 345 (832)
.+.++||||+- +..++ .+|+..+.-.. -.+
T Consensus 170 ~~ii~lSATl~--n~~~~------------------~~~l~~~~~~~-------------------~~r----------- 199 (720)
T 2zj8_A 170 AQIIGLSATIG--NPEEL------------------AEWLNAELIVS-------------------DWR----------- 199 (720)
T ss_dssp BEEEEEECCCS--CHHHH------------------HHHTTEEEEEC-------------------CCC-----------
T ss_pred CeEEEEcCCcC--CHHHH------------------HHHhCCcccCC-------------------CCC-----------
Confidence 78899999973 23333 33332211000 000
Q ss_pred hhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcch
Q 003311 346 EKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGK 425 (832)
Q Consensus 346 ~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~K 425 (832)
|-.....+.... ......+. . . ....+
T Consensus 200 ----p~~l~~~~~~~~---------------~~~~~~~~--~----------------------~----------~~~~~ 226 (720)
T 2zj8_A 200 ----PVKLRRGVFYQG---------------FVTWEDGS--I----------------------D----------RFSSW 226 (720)
T ss_dssp ----SSEEEEEEEETT---------------EEEETTSC--E----------------------E----------ECSST
T ss_pred ----CCcceEEEEeCC---------------eeeccccc--h----------------------h----------hhhHH
Confidence 111111111000 00000000 0 0 01122
Q ss_pred HHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC------------------C---------------CeEEEEcC
Q 003311 426 FELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN------------------D---------------FKFLRLDG 472 (832)
Q Consensus 426 l~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~------------------g---------------~~~~rldG 472 (832)
...+.+++ ..++++||||.....++.+...|... + ..+..+||
T Consensus 227 ~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~ 302 (720)
T 2zj8_A 227 EELVYDAI----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHA 302 (720)
T ss_dssp THHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECT
T ss_pred HHHHHHHH----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecC
Confidence 23333333 45789999999998888888777532 1 24889999
Q ss_pred CCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE----eC----CCCChhhHHHHhhhccccCCcCcEE
Q 003311 473 STKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FD----SDWNPQMDQQAEDRAHRIGQKKEVR 544 (832)
Q Consensus 473 ~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~----~D----~~wNp~~~~QAigRahRiGQ~k~V~ 544 (832)
+++.++|..+++.|+.+... +|++|.+++.|||++.+++||. || .|+++..+.|++|||+|.|+.....
T Consensus 303 ~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~ 379 (720)
T 2zj8_A 303 GLGRDERVLVEENFRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGE 379 (720)
T ss_dssp TSCHHHHHHHHHHHHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEE
T ss_pred CCCHHHHHHHHHHHHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCce
Confidence 99999999999999998765 7999999999999999999998 77 6899999999999999999999999
Q ss_pred EEEEEeCCCHHH
Q 003311 545 VFVLVSVGSIEE 556 (832)
Q Consensus 545 V~rLit~~siEe 556 (832)
+|.|++....+.
T Consensus 380 ~~~l~~~~~~~~ 391 (720)
T 2zj8_A 380 GIIVSTSDDPRE 391 (720)
T ss_dssp EEEECSSSCHHH
T ss_pred EEEEecCccHHH
Confidence 999999888554
No 41
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.92 E-value=1.5e-23 Score=260.40 Aligned_cols=376 Identities=15% Similarity=0.128 Sum_probs=229.2
Q ss_pred CCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC
Q 003311 110 LQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP 188 (832)
Q Consensus 110 l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 188 (832)
..+.+|+|||.+++..+.. +.+.|++.+||+|||++++..+..+... .+.+|||+|. .+..||.++|.++++
T Consensus 35 ~~~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred hCCCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 3456899999999987765 7889999999999999876665555443 3578999996 788999999999998
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHH--hhcCceEEEEeCCcccCCh--hhHHHHHHHccc
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL--KKVQWIYMIVDEGHRLKNH--ECALAKTISGYQ 264 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L--~~~~w~~vIiDEaHriKN~--~sk~~kal~~l~ 264 (832)
+..+..+.|.... ....+|+|+|++.+.+....- ....+.+|||||||++.+. .......+..+.
T Consensus 108 ~~~v~~l~G~~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 108 DVNIGLITGDVQI-----------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp -CCEEEECSSCEE-----------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred CCeEEEEeCCCcc-----------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 8888888886532 156789999999997654321 2236889999999999663 344555555564
Q ss_pred -cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHh
Q 003311 265 -IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343 (832)
Q Consensus 265 -~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~ 343 (832)
..+.++|||||- +. ..|.+|+........ +++.
T Consensus 177 ~~v~iIlLSAT~~--n~------------------~ef~~~l~~~~~~~~----------------------~vi~---- 210 (997)
T 4a4z_A 177 QHVKFILLSATVP--NT------------------YEFANWIGRTKQKNI----------------------YVIS---- 210 (997)
T ss_dssp TTCEEEEEECCCT--TH------------------HHHHHHHHHHHTCCE----------------------EEEE----
T ss_pred cCCCEEEEcCCCC--Ch------------------HHHHHHHhcccCCce----------------------EEEe----
Confidence 467799999973 22 234444431100000 0000
Q ss_pred HHhhcCCCCeEEE---------EEcCCCHHHHHHHHHHHHhcccc----c----------c--cCC-----Ccch----h
Q 003311 344 EVEKYLPGKSQVI---------LKCDMSAWQKVYYQQVTDVGRVG----L----------D--TGT-----GKSK----S 389 (832)
Q Consensus 344 dv~~~LP~k~e~~---------v~~~ms~~Q~~lY~~i~~~~~~~----~----------~--~~~-----~~~~----~ 389 (832)
....|...++. +.-.........|.......... . . .+. .+.. .
T Consensus 211 --~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~ 288 (997)
T 4a4z_A 211 --TPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRG 288 (997)
T ss_dssp --CSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------------------------
T ss_pred --cCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccc
Confidence 00001111111 11010000011111111100000 0 0 000 0000 0
Q ss_pred HHHHHHHHHHhhCCCccccccccchhhHHHH---hhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCC-
Q 003311 390 LQNLSMQLRKCCNHPYLFVGEYNMWRKEEII---RASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDF- 465 (832)
Q Consensus 390 l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~---~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~- 465 (832)
-..-...-+..+.-+ +........... ....++..|...+.. ....++||||.....++.+..+|...++
T Consensus 289 ~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~ 362 (997)
T 4a4z_A 289 NSTRGGANRGGSRGA----GAIGSNKRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINFC 362 (997)
T ss_dssp --------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCC
T ss_pred ccccccccccccccc----ccccccccccccccccchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCC
Confidence 000000000000000 000000000000 112344455555544 2457999999999999999998876655
Q ss_pred --------------------------------------eEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccccccc
Q 003311 466 --------------------------------------KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGL 507 (832)
Q Consensus 466 --------------------------------------~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GL 507 (832)
.+..+||++++.+|..+++.|+.+..+ +|++|.++++||
T Consensus 363 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~~~a~GI 439 (997)
T 4a4z_A 363 NNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATETFAMGL 439 (997)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECTHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEchHhhCCC
Confidence 478999999999999999999998876 799999999999
Q ss_pred CcccCCeEEEeCCCC---------ChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHH
Q 003311 508 NLQTADTVIIFDSDW---------NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILER 561 (832)
Q Consensus 508 NL~~ad~VI~~D~~w---------Np~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~ 561 (832)
|++. .+||+++.++ ++..|.|++|||+|.|+.....+|.+...+..+..++..
T Consensus 440 DiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~ 501 (997)
T 4a4z_A 440 NLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKE 501 (997)
T ss_dssp CCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHH
T ss_pred CCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHH
Confidence 9999 7777766555 999999999999999999999999998766666655543
No 42
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.92 E-value=1.7e-24 Score=261.26 Aligned_cols=320 Identities=19% Similarity=0.198 Sum_probs=215.7
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC-Cce
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SIA 191 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p-~~~ 191 (832)
+|+|+|.+++..+.. +.+.|++.+||+|||+++...+...+.. .+++|||+|. .+..||.+++.++.+ +..
T Consensus 25 ~l~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 899999999987543 7899999999999999986555444332 4689999997 588999999976654 577
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHh--hcCceEEEEeCCcccCC--hhhHHHHHHHcc----
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLK--KVQWIYMIVDEGHRLKN--HECALAKTISGY---- 263 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~--~~~w~~vIiDEaHriKN--~~sk~~kal~~l---- 263 (832)
+....|....... .....+|+|+|++.+......-. -..+.+|||||+|.+.. ....+...+..+
T Consensus 98 v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~ 170 (702)
T 2p6r_A 98 IGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN 170 (702)
T ss_dssp EEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcC
Confidence 7777775432111 11478999999999866433211 12578999999999865 333333333333
Q ss_pred ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHh
Q 003311 264 QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKD 343 (832)
Q Consensus 264 ~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~ 343 (832)
...+.++||||+- +..++. +|+..+.-... .+
T Consensus 171 ~~~~ii~lSATl~--n~~~~~------------------~~l~~~~~~~~-------------------~r--------- 202 (702)
T 2p6r_A 171 KALRVIGLSATAP--NVTEIA------------------EWLDADYYVSD-------------------WR--------- 202 (702)
T ss_dssp TTCEEEEEECCCT--THHHHH------------------HHTTCEEEECC-------------------CC---------
T ss_pred cCceEEEECCCcC--CHHHHH------------------HHhCCCcccCC-------------------CC---------
Confidence 3567899999973 234333 33321110000 00
Q ss_pred HHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhc
Q 003311 344 EVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRAS 423 (832)
Q Consensus 344 dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S 423 (832)
|-.....+.... ......+... ... .-
T Consensus 203 ------~~~l~~~~~~~~---------------~~~~~~~~~~-----------------------~~~---------~~ 229 (702)
T 2p6r_A 203 ------PVPLVEGVLCEG---------------TLELFDGAFS-----------------------TSR---------RV 229 (702)
T ss_dssp ------SSCEEEEEECSS---------------EEEEEETTEE-----------------------EEE---------EC
T ss_pred ------CccceEEEeeCC---------------eeeccCcchh-----------------------hhh---------hh
Confidence 111111110000 0000000000 000 00
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC------------------------------CCeEEEEcCC
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN------------------------------DFKFLRLDGS 473 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~------------------------------g~~~~rldG~ 473 (832)
.+...+.+. ...++++||||.....++.+...|... +..+..+||+
T Consensus 230 ~~~~~~~~~----~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 230 KFEELVEEC----VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp CHHHHHHHH----HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hHHHHHHHH----HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 022222222 346889999999998888887777532 1346779999
Q ss_pred CCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE----eC---CCCChhhHHHHhhhccccCCcCcEEEE
Q 003311 474 TKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FD---SDWNPQMDQQAEDRAHRIGQKKEVRVF 546 (832)
Q Consensus 474 ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~----~D---~~wNp~~~~QAigRahRiGQ~k~V~V~ 546 (832)
++.++|..+.+.|..+... +|++|.+++.|||++.+++||. || .|+++..+.|++|||+|.|+.++..+|
T Consensus 306 l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 382 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAI 382 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEE
T ss_pred CCHHHHHHHHHHHHCCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEE
Confidence 9999999999999998765 7999999999999999999998 77 789999999999999999999999999
Q ss_pred EEEeCCCHH
Q 003311 547 VLVSVGSIE 555 (832)
Q Consensus 547 rLit~~siE 555 (832)
.|++....+
T Consensus 383 ~l~~~~~~~ 391 (702)
T 2p6r_A 383 IIVGKRDRE 391 (702)
T ss_dssp EECCGGGHH
T ss_pred EEecCccHH
Confidence 999887644
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.91 E-value=1.1e-22 Score=254.55 Aligned_cols=322 Identities=17% Similarity=0.202 Sum_probs=222.6
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC-CC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA-PS 189 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~-p~ 189 (832)
+.+|.|+|.+++..++. +.+.|+..+||+|||+.++..+..+.. ..+.+|||+|. .|+.|+.+.|.++. .+
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 45799999999987775 778999999999999976666555542 24579999997 78899999999976 35
Q ss_pred ceEEEEcCChhH--HHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChh-------------h
Q 003311 190 IAAVVYDGRPDE--RKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHE-------------C 254 (832)
Q Consensus 190 ~~v~~~~g~~~~--r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~-------------s 254 (832)
+.+..++|.... +......+.. +.++|+|+|++.+.+....+...++++|||||||++.... .
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~--g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~ 226 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEE--DDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 226 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHT--SCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhC--CCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCH
Confidence 678888876543 2222222222 4689999999999877666666789999999999864311 1
Q ss_pred H-HHHHHHcc------------ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHH
Q 003311 255 A-LAKTISGY------------QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEE 321 (832)
Q Consensus 255 k-~~kal~~l------------~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee 321 (832)
. +..++..+ .....+++||||....+...+. .........
T Consensus 227 ~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~----------------~~~l~i~v~----------- 279 (1104)
T 4ddu_A 227 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF----------------RDLLNFTVG----------- 279 (1104)
T ss_dssp HHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHH----------------HHHTCCCCC-----------
T ss_pred HHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHh----------------hcceeEEec-----------
Confidence 1 23333333 3457899999986555432110 000000000
Q ss_pred HHHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhh
Q 003311 322 QLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCC 401 (832)
Q Consensus 322 ~~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~c 401 (832)
. .....+......+.
T Consensus 280 ------------------~----~~~~~~~i~~~~~~------------------------------------------- 294 (1104)
T 4ddu_A 280 ------------------R----LVSVARNITHVRIS------------------------------------------- 294 (1104)
T ss_dssp ------------------B----CCCCCCCEEEEEES-------------------------------------------
T ss_pred ------------------c----CCCCcCCceeEEEe-------------------------------------------
Confidence 0 00000111111111
Q ss_pred CCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEE-EEcCCCCHHHHH
Q 003311 402 NHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFL-RLDGSTKTEERG 480 (832)
Q Consensus 402 nhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~-rldG~ts~~eR~ 480 (832)
..|...|..++.. .+.++||||+....++.+..+|...|+.+. .+|| +|.
T Consensus 295 ---------------------~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr 345 (1104)
T 4ddu_A 295 ---------------------SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEK 345 (1104)
T ss_dssp ---------------------CCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHH
T ss_pred ---------------------cCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHH
Confidence 0233445555555 357999999999999999999999999998 9999 355
Q ss_pred HHHHhhcCCCCCceEEEEe----ccccccccCccc-CCeEEEeCCCC---------------------------------
Q 003311 481 TLLKQFNAPDSPYFMFLLS----TRAGGLGLNLQT-ADTVIIFDSDW--------------------------------- 522 (832)
Q Consensus 481 ~~i~~Fn~~~~~~~v~LlS----t~agg~GLNL~~-ad~VI~~D~~w--------------------------------- 522 (832)
+ ++.|+.+..+ +|++ |.++++|||++. +++||+||+|-
T Consensus 346 ~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~ 421 (1104)
T 4ddu_A 346 N-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDV 421 (1104)
T ss_dssp H-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHH
T ss_pred H-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 9999998776 6777 999999999999 99999999998
Q ss_pred ---------------------------------------ChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 003311 523 ---------------------------------------NPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563 (832)
Q Consensus 523 ---------------------------------------Np~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~ 563 (832)
++..|+||.||++|.|...-..-+-++..+ |++++..+.
T Consensus 422 ~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~--d~~~~~~l~ 499 (1104)
T 4ddu_A 422 EELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEE--DEEIFESLK 499 (1104)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECC--CHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEe--cHHHHHHHH
Confidence 777899999999998764432222222222 667888888
Q ss_pred HHHHHH
Q 003311 564 QKMGID 569 (832)
Q Consensus 564 ~K~~l~ 569 (832)
+++...
T Consensus 500 ~~~~~~ 505 (1104)
T 4ddu_A 500 TRLLLI 505 (1104)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 877643
No 44
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.91 E-value=8.7e-23 Score=252.57 Aligned_cols=344 Identities=16% Similarity=0.173 Sum_probs=208.5
Q ss_pred CCchHHHHHHHHHHHHhhc----------cCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC-CCchHHHHH
Q 003311 113 GELRAYQLEGLQWMLSLFN----------NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KAVLPNWIN 181 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~----------~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P-~sll~qW~~ 181 (832)
..|||||.+|+.+++.... .+.+|++++.||+|||++++.++ .++...+...++||||| ..|..||..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 3699999999999987543 24679999999999999997666 44443333458999999 588999999
Q ss_pred HHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHH----hhcCceEEEEeCCcccCChhhHHH
Q 003311 182 EFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL----KKVQWIYMIVDEGHRLKNHECALA 257 (832)
Q Consensus 182 E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L----~~~~w~~vIiDEaHriKN~~sk~~ 257 (832)
+|..|.+.. ++.+.. ...+...+.. ...+|+|+|++.+....... .-..+.+||||||||+... ...
T Consensus 349 ~f~~f~~~~---v~~~~s--~~~l~~~L~~--~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~--~~~ 419 (1038)
T 2w00_A 349 EYQRFSPDS---VNGSEN--TAGLKRNLDK--DDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG--EAQ 419 (1038)
T ss_dssp HHHTTSTTC---SSSSCC--CHHHHHHHHC--SSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH--HHH
T ss_pred HHHHhcccc---cccccC--HHHHHHHhcC--CCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch--HHH
Confidence 999998752 122211 1122222211 46789999999998754321 1126889999999997532 233
Q ss_pred HHH-HccccceEEEeeccCCCCCH----HHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhh
Q 003311 258 KTI-SGYQIQRRLLLTGTPIQNSL----QELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332 (832)
Q Consensus 258 kal-~~l~~~~rllLTGTPlqN~l----~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~ 332 (832)
+.+ ..++..++++|||||....- .... ..|+.++... +-.+ ++. ...
T Consensus 420 ~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~------------------~~FG~~i~~Y-----~l~~---AI~--dg~ 471 (1038)
T 2w00_A 420 KNLKKKFKRYYQFGFTGTPIFPENALGSETTA------------------SVFGRELHSY-----VITD---AIR--DEK 471 (1038)
T ss_dssp HHHHHHCSSEEEEEEESSCCCSTTCTTSCCHH------------------HHHCSEEEEE-----CHHH---HHH--HTS
T ss_pred HHHHHhCCcccEEEEeCCccccccchhhhHHH------------------HHhCCeeEee-----cHHH---HHh--CCC
Confidence 344 66777899999999985421 1111 1122211100 0000 000 011
Q ss_pred hhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCcccccccc
Q 003311 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN 412 (832)
Q Consensus 333 L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~ 412 (832)
+ +|.. +.+....+. |..+. ... ... ....+- +-..+
T Consensus 472 l---------------~p~~---v~y~~v~~~----~~~~~------~e~---d~~-------~~~~i~-~~~~l----- 507 (1038)
T 2w00_A 472 V---------------LKFK---VDYNDVRPQ----FKSLE------TET---DEK-------KLSAAE-NQQAF----- 507 (1038)
T ss_dssp S---------------CCEE---EEECCCCGG----GHHHH------TCC---CHH-------HHHHTC-STTTT-----
T ss_pred c---------------CCeE---EEEEeccch----hhhcc------ccc---cHH-------HHHHHH-HHHHh-----
Confidence 1 2211 111111110 00000 000 000 000000 00000
Q ss_pred chhhHHHHhhcchHHHHH-HHHHhhh---------hcCCeEEEEecchhHHHHHHHHHHhCC------------CeE-EE
Q 003311 413 MWRKEEIIRASGKFELLD-RLLPKLR---------KSGHRVLLFSQMTRLMDILEIYLKLND------------FKF-LR 469 (832)
Q Consensus 413 ~~~~~~l~~~S~Kl~~L~-~lL~~l~---------~~g~kvLIFsq~~~~ldiL~~~L~~~g------------~~~-~r 469 (832)
....++..+. .++..+. ..|.+++|||.+...+..+...|...+ +++ +.
T Consensus 508 --------~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv 579 (1038)
T 2w00_A 508 --------LHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATI 579 (1038)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEE
T ss_pred --------cCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEE
Confidence 0111222222 2333221 135689999999999988888886543 455 45
Q ss_pred EcCC----------C----------CH-----------------------------HHHHHHHHhhcCCCCCceEEEEec
Q 003311 470 LDGS----------T----------KT-----------------------------EERGTLLKQFNAPDSPYFMFLLST 500 (832)
Q Consensus 470 ldG~----------t----------s~-----------------------------~eR~~~i~~Fn~~~~~~~v~LlSt 500 (832)
++|. + +. ..|..++++|+.+... +||++
T Consensus 580 ~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~---ILIvv 656 (1038)
T 2w00_A 580 FSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID---LLIVV 656 (1038)
T ss_dssp CCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS---EEEES
T ss_pred EeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe---EEEEc
Confidence 5553 1 11 1488899999987766 78999
Q ss_pred cccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCc-Cc-EEEEEEEe
Q 003311 501 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQK-KE-VRVFVLVS 550 (832)
Q Consensus 501 ~agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~-k~-V~V~rLit 550 (832)
+...+|+|.+.+ .|+++|.|.+++.++||+||+.|.+.. |+ ..|+.|+.
T Consensus 657 d~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 657 GMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp STTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred chHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999999 678899999999999999999999974 44 78888874
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.87 E-value=1.6e-21 Score=244.11 Aligned_cols=319 Identities=14% Similarity=0.152 Sum_probs=207.7
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCC-
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS- 189 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~- 189 (832)
|..+ |+|.+++..++. +.+.|++.+||+|||+.++.++..+... .+.+|||+|. .+..|+.+.+.++++.
T Consensus 55 g~~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~~~---~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLALK---GKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp CSCC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHTT---SCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred CCCH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHhhc---CCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 3458 999999988775 7889999999999998555555544432 4579999997 6788999999988753
Q ss_pred -c----eEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccc
Q 003311 190 -I----AAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQ 264 (832)
Q Consensus 190 -~----~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~ 264 (832)
+ .+..++|.......... ......++|+|+|++.+......|. .+++|||||||++.+....+...+..+.
T Consensus 127 ~i~~~~~v~~~~Gg~~~~~~~~~--~~~l~~~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~~~lg 202 (1054)
T 1gku_B 127 GVGTENLIGYYHGRIPKREKENF--MQNLRNFKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHLLG 202 (1054)
T ss_dssp CCSGGGSEEECCSSCCSHHHHHH--HHSGGGCSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHHTT
T ss_pred CCCccceEEEEeCCCChhhHHHH--HhhccCCCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHHHHhC
Confidence 3 66777775443221111 1111238999999999987544433 6789999999998775555555554441
Q ss_pred ------------cceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhh
Q 003311 265 ------------IQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHV 332 (832)
Q Consensus 265 ------------~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~ 332 (832)
....+++|||+-.. .++.. .|...+. .
T Consensus 203 f~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~~--------------~~~~~~~------------------------~- 241 (1054)
T 1gku_B 203 FHYDLKTKSWVGEARGCLMVSTATAK--KGKKA--------------ELFRQLL------------------------N- 241 (1054)
T ss_dssp EEEETTTTEEEECCSSEEEECCCCSC--CCTTH--------------HHHHHHH------------------------C-
T ss_pred cchhhhhhhcccCCceEEEEecCCCc--hhHHH--------------HHhhcce------------------------E-
Confidence 23458888887433 11100 0000000 0
Q ss_pred hhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCcccccccc
Q 003311 333 IRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN 412 (832)
Q Consensus 333 L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~ 412 (832)
+.+.. ....++.... ..+
T Consensus 242 ---i~v~~-----~~~~~~~i~~-~~~----------------------------------------------------- 259 (1054)
T 1gku_B 242 ---FDIGS-----SRITVRNVED-VAV----------------------------------------------------- 259 (1054)
T ss_dssp ---CCCSC-----CEECCCCEEE-EEE-----------------------------------------------------
T ss_pred ---EEccC-----cccCcCCceE-EEe-----------------------------------------------------
Confidence 00000 0000000000 000
Q ss_pred chhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 003311 413 MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSP 492 (832)
Q Consensus 413 ~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~ 492 (832)
...|...|..++... +.++||||.....++.+..+|... +++..+||.+. .++++|+.+..+
T Consensus 260 ---------~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~ 321 (1054)
T 1gku_B 260 ---------NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEID 321 (1054)
T ss_dssp ---------SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCS
T ss_pred ---------chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCc
Confidence 012333444555443 678999999999999999999888 99999999873 788999988765
Q ss_pred ceEEEEe----ccccccccCcccC-CeEEEeCCC----------------------------------------------
Q 003311 493 YFMFLLS----TRAGGLGLNLQTA-DTVIIFDSD---------------------------------------------- 521 (832)
Q Consensus 493 ~~v~LlS----t~agg~GLNL~~a-d~VI~~D~~---------------------------------------------- 521 (832)
+|++ |.++++|||++.+ ++||+||+|
T Consensus 322 ---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1054)
T 1gku_B 322 ---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVRE 398 (1054)
T ss_dssp ---EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHH
T ss_pred ---EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5666 9999999999995 999999999
Q ss_pred -------------------------CChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 003311 522 -------------------------WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGI 568 (832)
Q Consensus 522 -------------------------wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~K~~l 568 (832)
.++..|+|++||++|.|.......+.|+..+ |..++..+.+++..
T Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~--d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 399 ILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED--DSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS--CHHHHHHHHHHHHT
T ss_pred HHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec--CHHHHHHHHHHHhh
Confidence 7899999999999998876432333344444 45566666666554
No 46
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.82 E-value=5.4e-20 Score=209.37 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=85.4
Q ss_pred CCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCe-----
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADT----- 514 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~----- 514 (832)
+.++||||+....++.+...|...|+++..+||. +|.++++.|+.+... +|++|.++++|||++ +++
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~g 242 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDPR 242 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEECC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEecC
Confidence 5689999999999999999999999999999997 688899999988766 799999999999999 555
Q ss_pred ------------EEEeCCCCChhhHHHHhhhccccCCcCc
Q 003311 515 ------------VIIFDSDWNPQMDQQAEDRAHRIGQKKE 542 (832)
Q Consensus 515 ------------VI~~D~~wNp~~~~QAigRahRiGQ~k~ 542 (832)
||+++.+.++..+.|++||++|.|....
T Consensus 243 ~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~ 282 (431)
T 2v6i_A 243 KTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLG 282 (431)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred ccccceecccceeecccccCCHHHHHHhhhccCCCCCCCC
Confidence 5778899999999999999999996544
No 47
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.80 E-value=7e-20 Score=196.31 Aligned_cols=163 Identities=18% Similarity=0.239 Sum_probs=124.0
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 189 (832)
.+|+|||.+++.+++. +.++||+++||+|||+++++++..+.... .+++|||||. .++.||.++|.+|.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 4899999999999887 46789999999999999988887766543 3589999997 788999999999963 3
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc-ccceE
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY-QIQRR 268 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l-~~~~r 268 (832)
..+..+.|...... ......+|+|+||+.+.+.... ....+++|||||||++.+. .....+..+ ...++
T Consensus 186 ~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~-~~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~ 255 (282)
T 1rif_A 186 AMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGK--SISSIISGLNNCMFK 255 (282)
T ss_dssp GGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGG-GGGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEE
T ss_pred ceEEEEeCCCcchh-------hhccCCcEEEEchHHHHhhHHH-HHhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeE
Confidence 45555544332111 1114678999999998765332 2236899999999999864 555566666 68899
Q ss_pred EEeeccCCCCCHHHHHHHHhccCC
Q 003311 269 LLLTGTPIQNSLQELWSLLNFLLP 292 (832)
Q Consensus 269 llLTGTPlqN~l~EL~sLl~fL~p 292 (832)
++|||||. |...+++.++.++.|
T Consensus 256 l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 256 FGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp EEECSSCC-TTSTTHHHHHHHHCE
T ss_pred EEEeCCCC-CcchHHHHHHHhcCC
Confidence 99999995 556788888887765
No 48
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.79 E-value=2.9e-19 Score=204.57 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=86.5
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEe
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIF 518 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~ 518 (832)
.+.++||||+....++.+...|...|+.+..++|.+. ..+++.|+.+... +|++|.++++|||++. ++||.|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEEC
Confidence 3568999999999999999999999999999999654 5789999988766 7999999999999999 999999
Q ss_pred C--------------------CCCChhhHHHHhhhccccCCcC
Q 003311 519 D--------------------SDWNPQMDQQAEDRAHRIGQKK 541 (832)
Q Consensus 519 D--------------------~~wNp~~~~QAigRahRiGQ~k 541 (832)
| .|.++..+.|++||++|.|...
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 8 8999999999999999999733
No 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.79 E-value=2e-19 Score=205.13 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=81.6
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE-
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII- 517 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~- 517 (832)
.+.++||||.....++.+...|...|+++..+|| ++|..+++.|+.+... +|++|.++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeC
Confidence 3779999999999999999999999999999999 4688999999998776 799999999999999 999986
Q ss_pred ------------------eCCCCChhhHHHHhhhccccCCcCcEEEEEEE
Q 003311 518 ------------------FDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLV 549 (832)
Q Consensus 518 ------------------~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLi 549 (832)
|+.|.++..+.|++||++|.|... -.+|.|+
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~-g~~~~l~ 296 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD-GDSYYYS 296 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC-CEEEEEC
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCC-ceEEEEe
Confidence 899999999999999999985332 2334443
No 50
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.79 E-value=6e-18 Score=201.55 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=100.6
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
..|+.+|.+++......|.+|||||......+.|...|...|+++..|+|.....+|..+...|+.+ . ++|+|..
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~---VlIATdm 489 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--A---VTIATNM 489 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--C---EEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--e---EEEeCCc
Confidence 3588888888887777789999999999999999999999999999999998877776555556543 2 7999999
Q ss_pred cccccCcc--------cCCeEEEeCCCCChhhHHHHhhhccccCCcCc
Q 003311 503 GGLGLNLQ--------TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 542 (832)
Q Consensus 503 gg~GLNL~--------~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~ 542 (832)
+|+|+|+. ...+||.||.|-++..|.|++||++|.|..-.
T Consensus 490 AgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 490 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred cccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCe
Confidence 99999999 67899999999999999999999999886543
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.78 E-value=6e-19 Score=202.33 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=89.5
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE-
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII- 517 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~- 517 (832)
.+.++||||.....++.+...|...|+.+..++|. +|..+++.|+.+... +|++|.++++|||++. ++||.
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEEC
Confidence 36799999999999999999999999999999994 688899999988766 7999999999999999 99998
Q ss_pred -------------------eCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 518 -------------------FDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 518 -------------------~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
||.|.++..+.|++||++|.|.. +-.+|.|++..
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 78999999999999999999963 33455666665
No 52
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.78 E-value=4.3e-19 Score=211.68 Aligned_cols=122 Identities=15% Similarity=0.177 Sum_probs=96.6
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE-
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII- 517 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~- 517 (832)
.+.++||||.....++.+...|...++++..+|| ++|..+++.|+.+... +|++|.++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEEC
Confidence 4789999999999999999999999999999999 3799999999998766 799999999999999 999997
Q ss_pred -------------------eCCCCChhhHHHHhhhccccCCcCcEEEEEEEeC-CCHHHHHHHHHHHHHHHH
Q 003311 518 -------------------FDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV-GSIEEVILERAKQKMGID 569 (832)
Q Consensus 518 -------------------~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~-~siEe~Il~~~~~K~~l~ 569 (832)
||.|.++..+.|++||++|.|.... .+|.|+.. ..-|..++...+.++.+.
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G-~ai~l~~~~~~~d~~~l~~ie~~~~l~ 551 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIG-DEYHYGGGTSEDDTMLAHWTEAKILLD 551 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCC-EEEEECSCCCCCCTTBHHHHHHHHHHH
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCC-EEEEEEecCChhHHHHHHHHHHHHhhh
Confidence 6788899999999999999943332 23444321 222334444455544443
No 53
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.77 E-value=2.3e-18 Score=180.21 Aligned_cols=145 Identities=24% Similarity=0.292 Sum_probs=113.6
Q ss_pred CcCCCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhh
Q 003311 108 TLLQGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTW 186 (832)
Q Consensus 108 ~~l~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~ 186 (832)
....+.+|+|||.+++.+++. +.++|++++||+|||+++++++..+ .+++|||||. .++.||.+++.+|
T Consensus 87 ~~~~~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG
T ss_pred cccCCCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC
Confidence 444567999999999987664 4569999999999999998887653 4689999998 7889999999994
Q ss_pred CCCce-EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcccc
Q 003311 187 APSIA-AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQI 265 (832)
Q Consensus 187 ~p~~~-v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~ 265 (832)
+.. +..+.|... ...+|+|+||+.+......+. ..|++|||||||++.+.. ....+..+..
T Consensus 157 --~~~~v~~~~g~~~-------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~~~i~~~~~~ 218 (237)
T 2fz4_A 157 --GEEYVGEFSGRIK-------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--YVQIAQMSIA 218 (237)
T ss_dssp --CGGGEEEESSSCB-------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--HHHHHHTCCC
T ss_pred --CCCeEEEEeCCCC-------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--HHHHHHhccC
Confidence 355 777777543 356899999999988766553 369999999999998754 3345567788
Q ss_pred ceEEEeeccCCCCCH
Q 003311 266 QRRLLLTGTPIQNSL 280 (832)
Q Consensus 266 ~~rllLTGTPlqN~l 280 (832)
.++|+|||||..++-
T Consensus 219 ~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 219 PFRLGLTATFEREDG 233 (237)
T ss_dssp SEEEEEEESCC----
T ss_pred CEEEEEecCCCCCCC
Confidence 999999999987653
No 54
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.77 E-value=7.2e-18 Score=165.93 Aligned_cols=134 Identities=19% Similarity=0.306 Sum_probs=117.1
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
.+.|+..|..++... .+.++||||++...++.+...|...|+.+..++|+++..+|..+++.|+.+... +|++|+
T Consensus 19 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T~ 93 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVATD 93 (163)
T ss_dssp GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECG
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEECC
Confidence 467999999998764 567999999999999999999999999999999999999999999999998765 789999
Q ss_pred ccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHHH
Q 003311 502 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQ 564 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~~ 564 (832)
++++|||++.+++||+||+||||..+.|++||++|.|+... ++.|++.. |...+....+
T Consensus 94 ~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~--~~~~~~~~--~~~~~~~i~~ 152 (163)
T 2hjv_A 94 VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGK--AISFVTAF--EKRFLADIEE 152 (163)
T ss_dssp GGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEE--EEEEECGG--GHHHHHHHHH
T ss_pred hhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCce--EEEEecHH--HHHHHHHHHH
Confidence 99999999999999999999999999999999999997654 45566654 4445555444
No 55
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.76 E-value=1.2e-17 Score=198.45 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=103.2
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
..|+.+|.+.+......|.+|||||......+.|...|...|+++..|+|.....+|.-+.+.|+.+ . ++|+|..
T Consensus 424 ~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATnm 498 (853)
T 2fsf_A 424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--A---VTIATNM 498 (853)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--C---EEEEESC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEeccc
Confidence 4699999999988878899999999999999999999999999999999998877777777888765 2 7999999
Q ss_pred cccccCcccC-------------------------------------CeEEEeCCCCChhhHHHHhhhccccCCcCc
Q 003311 503 GGLGLNLQTA-------------------------------------DTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 542 (832)
Q Consensus 503 gg~GLNL~~a-------------------------------------d~VI~~D~~wNp~~~~QAigRahRiGQ~k~ 542 (832)
+|+|+|+... .+||.+|.|-++..|.|++||++|.|..-.
T Consensus 499 AgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~ 575 (853)
T 2fsf_A 499 AGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGS 575 (853)
T ss_dssp CSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred ccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCee
Confidence 9999999863 599999999999999999999999986544
No 56
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.76 E-value=5.9e-17 Score=209.99 Aligned_cols=320 Identities=16% Similarity=0.156 Sum_probs=194.9
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhh-CC--
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTW-AP-- 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~-~p-- 188 (832)
..+.|.|.+++.-+ ++.+.|.+++.+||+|||+++...|...+... ..+.+|+|+|. ++..|-..+|.+. .+
T Consensus 925 ~~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~~~-~~~kavyi~P~raLa~q~~~~~~~~f~~~~ 1000 (1724)
T 4f92_B 925 PFFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-SEGRCVYITPMEALAEQVYMDWYEKFQDRL 1000 (1724)
T ss_dssp SBCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-TTCCEEEECSCHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-CCCEEEEEcChHHHHHHHHHHHHHHhchhc
Confidence 36889999998744 45677899999999999999854444433322 24579999996 6666655665443 22
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhH------HHHhhcCceEEEEeCCcccCChhhH-HHHHHH
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDR------QYLKKVQWIYMIVDEGHRLKNHECA-LAKTIS 261 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~------~~L~~~~w~~vIiDEaHriKN~~sk-~~kal~ 261 (832)
+.+|..+.|......... .+.+|+|+|++.+..-. ..+. +..+|||||+|.+...... +...+.
T Consensus 1001 g~~V~~ltGd~~~~~~~~-------~~~~IiV~TPEkld~llr~~~~~~~l~--~v~lvViDE~H~l~d~rg~~le~il~ 1071 (1724)
T 4f92_B 1001 NKKVVLLTGETSTDLKLL-------GKGNIIISTPEKWDILSRRWKQRKNVQ--NINLFVVDEVHLIGGENGPVLEVICS 1071 (1724)
T ss_dssp CCCEEECCSCHHHHHHHH-------HHCSEEEECHHHHHHHHTTTTTCHHHH--SCSEEEECCGGGGGSTTHHHHHHHHH
T ss_pred CCEEEEEECCCCcchhhc-------CCCCEEEECHHHHHHHHhCcccccccc--eeeEEEeechhhcCCCCCccHHHHHH
Confidence 567888888765432221 35789999999874321 1222 4578999999999753322 222222
Q ss_pred c-------c-ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhh
Q 003311 262 G-------Y-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVI 333 (832)
Q Consensus 262 ~-------l-~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L 333 (832)
. . ...+.++||||- .|..++ .+|++....... ....
T Consensus 1072 rl~~i~~~~~~~~riI~lSATl--~N~~dl------------------a~WL~~~~~~~~--~~~~-------------- 1115 (1724)
T 4f92_B 1072 RMRYISSQIERPIRIVALSSSL--SNAKDV------------------AHWLGCSATSTF--NFHP-------------- 1115 (1724)
T ss_dssp HHHHHHHTTSSCCEEEEEESCB--TTHHHH------------------HHHHTCCSTTEE--ECCG--------------
T ss_pred HHHHHHhhcCCCceEEEEeCCC--CCHHHH------------------HHHhCCCCCCeE--EeCC--------------
Confidence 2 2 234679999994 234444 444432110000 0000
Q ss_pred hhhhhhhhHhHHhhcCCCCeE-EEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCcccccccc
Q 003311 334 RPFILRRKKDEVEKYLPGKSQ-VILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYN 412 (832)
Q Consensus 334 ~pfllRR~k~dv~~~LP~k~e-~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~ 412 (832)
..-|-..+ ++...+.......+ .
T Consensus 1116 -------------~~RPvpL~~~i~~~~~~~~~~~~-----------------------------~-------------- 1139 (1724)
T 4f92_B 1116 -------------NVRPVPLELHIQGFNISHTQTRL-----------------------------L-------------- 1139 (1724)
T ss_dssp -------------GGCSSCEEEEEEEECCCSHHHHH-----------------------------H--------------
T ss_pred -------------CCCCCCeEEEEEeccCCCchhhh-----------------------------h--------------
Confidence 00121111 11111111100000 0
Q ss_pred chhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHh------------------------------
Q 003311 413 MWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKL------------------------------ 462 (832)
Q Consensus 413 ~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~------------------------------ 462 (832)
.....+...+.. ...++++||||.....++.++..|..
T Consensus 1140 -----------~~~~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~ 1207 (1724)
T 4f92_B 1140 -----------SMAKPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDST 1207 (1724)
T ss_dssp -----------TTHHHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHH
T ss_pred -----------hhcchHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHH
Confidence 000001111111 23466788888877655544433310
Q ss_pred ----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE----eCC------CCChhhHH
Q 003311 463 ----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FDS------DWNPQMDQ 528 (832)
Q Consensus 463 ----~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~----~D~------~wNp~~~~ 528 (832)
....+..+||+++..+|..+.+.|..+... +|++|..++.|||+++..+||. ||. +.++..+.
T Consensus 1208 L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~---VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~ 1284 (1724)
T 4f92_B 1208 LKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ---VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVL 1284 (1724)
T ss_dssp HHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBC---EEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHH
T ss_pred HHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCe---EEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHH
Confidence 023477899999999999999999998766 7999999999999997665552 332 46889999
Q ss_pred HHhhhccccCCcCcEEEEEEEeCC
Q 003311 529 QAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 529 QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
|++|||+|.|....-.++.|+...
T Consensus 1285 Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1285 QMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp HHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred HhhccccCCCCCCceEEEEEecch
Confidence 999999999998887777777654
No 57
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.76 E-value=6.1e-18 Score=168.15 Aligned_cols=133 Identities=22% Similarity=0.236 Sum_probs=115.3
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
.+.|+..|.+++... .+.++||||++...++.+...|...|+.+..++|.++..+|..+++.|+.+... +|++|.
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 456899999999875 567999999999999999999999999999999999999999999999988766 789999
Q ss_pred ccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 003311 502 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 562 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~ 562 (832)
++++|||++.+++||+||+|||+..+.|++||++|.|+... ++.|++.. -+..++..+
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~--~~~~~~~~-~~~~~~~~l 147 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL--AITFVSDE-NDAKILNDV 147 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCE--EEEEECSH-HHHHHHHHH
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcE--EEEEEcCh-hHHHHHHHH
Confidence 99999999999999999999999999999999999998654 44455442 134444443
No 58
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.75 E-value=2.5e-17 Score=195.94 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=101.4
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
..|+.+|.+.+......|.+|||||......+.|...|...|+++..|+|.....++.-+.+.|+.+ . ++|+|..
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATnm 517 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--G---VTVATNM 517 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--C---EEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecch
Confidence 4589999999988878899999999999999999999999999999999998766666666777764 2 7999999
Q ss_pred cccccCcccC----------------------------------------------------CeEEEeCCCCChhhHHHH
Q 003311 503 GGLGLNLQTA----------------------------------------------------DTVIIFDSDWNPQMDQQA 530 (832)
Q Consensus 503 gg~GLNL~~a----------------------------------------------------d~VI~~D~~wNp~~~~QA 530 (832)
+|+|+|+... .+||.+|.+-++..|.|+
T Consensus 518 AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr 597 (922)
T 1nkt_A 518 AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQL 597 (922)
T ss_dssp CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHH
T ss_pred hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHH
Confidence 9999999864 499999999999999999
Q ss_pred hhhccccCCcCc
Q 003311 531 EDRAHRIGQKKE 542 (832)
Q Consensus 531 igRahRiGQ~k~ 542 (832)
+||++|.|..-.
T Consensus 598 ~GRTGRqGdpG~ 609 (922)
T 1nkt_A 598 RGRSGRQGDPGE 609 (922)
T ss_dssp HHTSSGGGCCEE
T ss_pred hcccccCCCCee
Confidence 999999886543
No 59
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.75 E-value=2.6e-18 Score=203.44 Aligned_cols=285 Identities=15% Similarity=0.150 Sum_probs=181.7
Q ss_pred HhhccCCCeEEEcCCCCcHHHHH-HHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCceEEEEcCChhHHHHH
Q 003311 128 SLFNNNLNGILADEMGLGKTIQT-IALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAM 205 (832)
Q Consensus 128 ~~~~~~~~gILaDemGlGKTiqa-iali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~ 205 (832)
....++.+.|++.+||+|||++. +.++..+... ...+||++|. .|..|+.++|.. ..+. |.+..-.
T Consensus 181 ~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~---~~~vLvl~PtreLa~Qi~~~l~~----~~v~-~~~~~l~---- 248 (618)
T 2whx_A 181 DIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR---RLRTLILAPTRVVAAEMEEALRG----LPIR-YQTPAVK---- 248 (618)
T ss_dssp GGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTTT----SCEE-ECCTTSS----
T ss_pred HHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC---CCeEEEEcChHHHHHHHHHHhcC----Ccee-Eecccce----
Confidence 33445888999999999999985 5566555542 3479999997 567777777753 2222 4332100
Q ss_pred HHHHHhhcCCccEEecCHHHHHHhHHH-HhhcCceEEEEeCCcccCChhh--HHHHHHHcc--ccceEEEeeccCCCCCH
Q 003311 206 REEFFSERGRFNVLITHYDLIMRDRQY-LKKVQWIYMIVDEGHRLKNHEC--ALAKTISGY--QIQRRLLLTGTPIQNSL 280 (832)
Q Consensus 206 ~~~~~~~~~~~dVvItTye~l~~d~~~-L~~~~w~~vIiDEaHriKN~~s--k~~kal~~l--~~~~rllLTGTPlqN~l 280 (832)
........+.++++..+.+.... ..-.++++|||||||++ +... .+...+..+ .....+++||||-...
T Consensus 249 ----~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~- 322 (618)
T 2whx_A 249 ----SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGST- 322 (618)
T ss_dssp ----CCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCC-
T ss_pred ----eccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhh-
Confidence 00012344667787776653221 11246889999999998 3322 222222333 3467899999984321
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcC
Q 003311 281 QELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCD 360 (832)
Q Consensus 281 ~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ 360 (832)
. .|.. .-|.. ..+...
T Consensus 323 ~------~~~~--------------------------------------------------------~~~~~--~~v~~~ 338 (618)
T 2whx_A 323 D------PFPQ--------------------------------------------------------SNSPI--EDIERE 338 (618)
T ss_dssp C------SSCC--------------------------------------------------------CSSCE--EEEECC
T ss_pred h------hhhc--------------------------------------------------------cCCce--eeeccc
Confidence 1 0000 00000 001000
Q ss_pred CCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhcC
Q 003311 361 MSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSG 440 (832)
Q Consensus 361 ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g 440 (832)
. |. ... . .++..+...+
T Consensus 339 ~------------------------------------------~~---~~~---------------~---~ll~~l~~~~ 355 (618)
T 2whx_A 339 I------------------------------------------PE---RSW---------------N---TGFDWITDYQ 355 (618)
T ss_dssp C------------------------------------------CS---SCC---------------S---SSCHHHHHCC
T ss_pred C------------------------------------------CH---HHH---------------H---HHHHHHHhCC
Confidence 0 00 000 0 0011112236
Q ss_pred CeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeE-----
Q 003311 441 HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTV----- 515 (832)
Q Consensus 441 ~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~V----- 515 (832)
.++||||+....++.+...|...|+++..+||. +|.++++.|+.+... +|++|.++++|||++ +++|
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId~g~ 427 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVIDPRR 427 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEECCE
T ss_pred CCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEECcc
Confidence 799999999999999999999999999999984 788899999988766 799999999999997 8888
Q ss_pred ---------------EEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC-CHHHHHHHHHHHHH
Q 003311 516 ---------------IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG-SIEEVILERAKQKM 566 (832)
Q Consensus 516 ---------------I~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~-siEe~Il~~~~~K~ 566 (832)
|+||.|-++..|.|++||++|.|..+. .+|.|++.. .-|...+..++.++
T Consensus 428 ~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 428 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCCCCCCTTCHHHHHHHH
T ss_pred eecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEccCCchhhHHHHHHHHhHh
Confidence 777888999999999999999986443 356666521 12334444444444
No 60
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=171.82 Aligned_cols=125 Identities=23% Similarity=0.299 Sum_probs=98.9
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
.+.|+..|.++|.... .+.++||||++...++.+...|...|+.+..++|+++..+|..+++.|+.+... +|++|+
T Consensus 29 ~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 104 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVATA 104 (185)
T ss_dssp GGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEEC
T ss_pred cHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEcC
Confidence 4679999999998753 578999999999999999999999999999999999999999999999987766 789999
Q ss_pred ccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 502 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
++++|||++.+++||+||+|||+..+.|++||++|.|++. .++.|++..
T Consensus 105 ~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~ 153 (185)
T 2jgn_A 105 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 153 (185)
T ss_dssp ------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCE--EEEEEECGG
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCc--EEEEEEchh
Confidence 9999999999999999999999999999999999999754 556666654
No 61
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.73 E-value=8.7e-18 Score=203.76 Aligned_cols=110 Identities=17% Similarity=0.160 Sum_probs=95.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh-----------CCCeEEEEcCCCCHHHHHHHHHhhc-----CCCCCceEEEEeccc
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKL-----------NDFKFLRLDGSTKTEERGTLLKQFN-----APDSPYFMFLLSTRA 502 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~-----------~g~~~~rldG~ts~~eR~~~i~~Fn-----~~~~~~~v~LlSt~a 502 (832)
.+.++|||+.....++.+...|.. .++.+..++|+++.++|..+++.|. .+. .-+|++|.+
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~---~kVlVAT~i 378 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPG---RKVVISTNI 378 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCC---EEEEEECTH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCc---eEEEEeCcH
Confidence 467999999999999888888864 6889999999999999999999998 543 347999999
Q ss_pred cccccCcccCCeEEEeCC------------------CCChhhHHHHhhhccccCCcCcEEEEEEEeCCCH
Q 003311 503 GGLGLNLQTADTVIIFDS------------------DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554 (832)
Q Consensus 503 gg~GLNL~~ad~VI~~D~------------------~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~si 554 (832)
+++|||++.+++||.++. |.+...+.|+.|||+|. ++-.+|+|+++...
T Consensus 379 ae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 379 AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred HHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999999766 88999999999999998 45678888876544
No 62
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.73 E-value=6.9e-17 Score=209.38 Aligned_cols=324 Identities=16% Similarity=0.159 Sum_probs=196.3
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHH-HHHHhc-------CCCCCEEEEeCC-CchHHHHHHH
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIA-YLLENK-------GVTGPHVIVAPK-AVLPNWINEF 183 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~-~l~~~~-------~~~~p~LIV~P~-sll~qW~~E~ 183 (832)
.+|.+.|.+++..++ +.+.|.+++.+||+|||+.+...+. .+.... ...+.+|+|+|. +|..+-.++|
T Consensus 78 ~~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 78 KTLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp SBCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 479999999987544 4678899999999999999865544 443321 123468999996 6777777777
Q ss_pred HhhCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh------HHHHhhcCceEEEEeCCcccCCh-hh
Q 003311 184 STWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD------RQYLKKVQWIYMIVDEGHRLKNH-EC 254 (832)
Q Consensus 184 ~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d------~~~L~~~~w~~vIiDEaHriKN~-~s 254 (832)
.+.+. ++.|..+.|....... .....+|+|||+|.+..- ...+. ...+|||||+|.+.+. +.
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~~~-------~~~~~~IlVtTpEkld~llr~~~~~~~l~--~v~~vIiDEvH~l~d~RG~ 225 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLCKE-------EISATQIIVCTPEKWDIITRKGGERTYTQ--LVRLIILDEIHLLHDDRGP 225 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSCCT-------TGGGCSEEEECHHHHHHHTTSSTTHHHHT--TEEEEEETTGGGGGSTTHH
T ss_pred HHHHhhCCCEEEEEECCCCCCcc-------ccCCCCEEEECHHHHHHHHcCCccchhhc--CcCEEEEecchhcCCccHH
Confidence 66543 4678888886432110 114689999999986321 12232 4678999999988652 22
Q ss_pred HHHHHHH-------cc-ccceEEEeeccCCCCCHHHHHHHHhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHH
Q 003311 255 ALAKTIS-------GY-QIQRRLLLTGTPIQNSLQELWSLLNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLII 326 (832)
Q Consensus 255 k~~kal~-------~l-~~~~rllLTGTPlqN~l~EL~sLl~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~ 326 (832)
.+-..+. .. ...++++||||- .|+.++. +|+......
T Consensus 226 ~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA------------------~wL~~~~~~--------------- 270 (1724)
T 4f92_B 226 VLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVA------------------TFLRVDPAK--------------- 270 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHH------------------HHTTCCHHH---------------
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHH------------------HHhCCCCCC---------------
Confidence 2222221 12 344789999994 2445443 333210000
Q ss_pred HHHHhhhhhhhhhhhHhHHhhcCCCCe-EEEEEcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCc
Q 003311 327 RRLHHVIRPFILRRKKDEVEKYLPGKS-QVILKCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPY 405 (832)
Q Consensus 327 ~~L~~~L~pfllRR~k~dv~~~LP~k~-e~~v~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~ 405 (832)
.+ +.+. ...-|-.. ..++.+.-. ..... ...+.
T Consensus 271 -~~------~~~~------~~~RPvpL~~~~~~~~~~-------------------------~~~~~-~~~~~------- 304 (1724)
T 4f92_B 271 -GL------FYFD------NSFRPVPLEQTYVGITEK-------------------------KAIKR-FQIMN------- 304 (1724)
T ss_dssp -HE------EECC------GGGCSSCEEEECCEECCC-------------------------CHHHH-HHHHH-------
T ss_pred -Ce------EEEC------CCCccCccEEEEeccCCc-------------------------chhhh-hHHHH-------
Confidence 00 0000 00011111 111111100 00000 00000
Q ss_pred cccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHH----h-------------------
Q 003311 406 LFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK----L------------------- 462 (832)
Q Consensus 406 l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~----~------------------- 462 (832)
..+...+.+. ..++++||||..+..++.++..|. .
T Consensus 305 ---------------------~~~~~~v~~~-~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (1724)
T 4f92_B 305 ---------------------EIVYEKIMEH-AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLR 362 (1724)
T ss_dssp ---------------------HHHHHHHTTC-CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHH
T ss_pred ---------------------HHHHHHHHHH-hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHH
Confidence 0011111111 245688999887654444433332 1
Q ss_pred --------------CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEE----eCCC---
Q 003311 463 --------------NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVII----FDSD--- 521 (832)
Q Consensus 463 --------------~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~----~D~~--- 521 (832)
....+...||+++.++|..+.+.|+.+... +|++|.+++.||||++.+.||. ||+.
T Consensus 363 ~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~---vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~ 439 (1724)
T 4f92_B 363 TEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQ---VLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR 439 (1724)
T ss_dssp HTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCC---EEEECHHHHHHSCCCBSEEEEECCEEEETTTTE
T ss_pred hhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCe---EEEEcchhHhhCCCCCceEEEeCCEEecCcCCC
Confidence 123477889999999999999999998876 7999999999999998877773 6654
Q ss_pred ---CChhhHHHHhhhccccCCcCcEEEEEEEeCCCH
Q 003311 522 ---WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554 (832)
Q Consensus 522 ---wNp~~~~QAigRahRiGQ~k~V~V~rLit~~si 554 (832)
-++..+.|++|||+|.|....-.++.++..+..
T Consensus 440 ~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~ 475 (1724)
T 4f92_B 440 WTELGALDILQMLGRAGRPQYDTKGEGILITSHGEL 475 (1724)
T ss_dssp EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTC
T ss_pred cccCCHHHHHHhhhhccCCCCCCccEEEEEecchhH
Confidence 478999999999999998777777777766543
No 63
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.73 E-value=6e-18 Score=201.41 Aligned_cols=108 Identities=21% Similarity=0.264 Sum_probs=94.5
Q ss_pred eEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEeCC-
Q 003311 442 RVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDS- 520 (832)
Q Consensus 442 kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~D~- 520 (832)
..+|||.....++.+...|...++.+..+||+++.++|..+++.|+.++..+. +|++|.+++.|||+ .+++||+++.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~-VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK-ILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCC-EEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeE-EEEeCcHHHCCcCc-CccEEEECCcc
Confidence 34788888999999999999999999999999999999999999998332222 69999999999999 9999999999
Q ss_pred -------------CCChhhHHHHhhhccccCCc-CcEEEEEEEeC
Q 003311 521 -------------DWNPQMDQQAEDRAHRIGQK-KEVRVFVLVSV 551 (832)
Q Consensus 521 -------------~wNp~~~~QAigRahRiGQ~-k~V~V~rLit~ 551 (832)
|+++..+.|+.|||+|.|+. .+..||.+...
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 44677776544
No 64
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.73 E-value=2.9e-17 Score=161.86 Aligned_cols=125 Identities=24% Similarity=0.329 Sum_probs=109.0
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
.|+..|.+++... .+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+.+... +|++|.++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~ 90 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLL 90 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGG
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChh
Confidence 3889999998875 568999999999999999999999999999999999999999999999988765 78999999
Q ss_pred ccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHH
Q 003311 504 GLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 555 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siE 555 (832)
++|+|++.+++||+||+||++..+.|++||++|.|+.. .++.|++....+
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~~~~~~~~~ 140 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG--VAINFVTNEDVG 140 (165)
T ss_dssp TTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----C--EEEEEEETTTHH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc--eEEEEEcchHHH
Confidence 99999999999999999999999999999999999765 456677776543
No 65
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=167.37 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=107.4
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
.+.|+..|.++|.. .+.++||||++...++.+..+|...|+.+..++|+++..+|..+++.|+.+... +|++|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcC
Confidence 35688888887765 466899999999999999999999999999999999999999999999987765 789999
Q ss_pred ccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCC
Q 003311 502 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 552 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~ 552 (832)
++++|||++.+++||+||+|||+..+.|++||++|.|++.. ++.|++..
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~--~i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGI--ATTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCE--EEEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcE--EEEEEcCc
Confidence 99999999999999999999999999999999999998764 45566654
No 66
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=7.1e-17 Score=160.64 Aligned_cols=123 Identities=19% Similarity=0.322 Sum_probs=107.4
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
.|+..|..++... .+.++||||++...++.+...|...|+.+..++|+++..+|..+++.|+.+... +|++|.++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecch
Confidence 4888888888765 467999999999999999999999999999999999999999999999988765 79999999
Q ss_pred ccccCcccCCeEEEeCCC------CChhhHHHHhhhccccCCcCcEEEEEEEeCCC
Q 003311 504 GLGLNLQTADTVIIFDSD------WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 553 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~~------wNp~~~~QAigRahRiGQ~k~V~V~rLit~~s 553 (832)
++|||++.+++||+||+| +++..+.|++||++|.|+. ..++.|++...
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 999999999999999999 6779999999999999954 56777887765
No 67
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.71 E-value=2e-17 Score=195.15 Aligned_cols=261 Identities=17% Similarity=0.162 Sum_probs=169.3
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHH
Q 003311 132 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFF 210 (832)
Q Consensus 132 ~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~ 210 (832)
.+.+.|+..++|+|||.+....+. +. ...+||++|. .+..|+.+.+.+.+. ..+....|...
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll---~~---g~~vLVl~PTReLA~Qia~~l~~~~g-~~vg~~vG~~~---------- 293 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYA---AQ---GYKVLVLNPSVAATLGFGAYMSKAHG-IDPNIRTGVRT---------- 293 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH---HT---TCCEEEEESCHHHHHHHHHHHHHHHS-CCCEEECSSCE----------
T ss_pred cCCeEEEEeCCchhHHHHHHHHHH---HC---CCeEEEEcchHHHHHHHHHHHHHHhC-CCeeEEECcEe----------
Confidence 466788999999999977654432 22 2379999997 566778877776653 23333344321
Q ss_pred hhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhh-HHHHHHHcccc---ceEEEeeccCCCCCHHHHHHH
Q 003311 211 SERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHEC-ALAKTISGYQI---QRRLLLTGTPIQNSLQELWSL 286 (832)
Q Consensus 211 ~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~s-k~~kal~~l~~---~~rllLTGTPlqN~l~EL~sL 286 (832)
.....+|+|+|++.+.... .+...++.+|||||||.+-.... .+...+..+.. ...+++||||-..
T Consensus 294 -~~~~~~IlV~TPGrLl~~~-~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~-------- 363 (666)
T 3o8b_A 294 -ITTGAPVTYSTYGKFLADG-GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS-------- 363 (666)
T ss_dssp -ECCCCSEEEEEHHHHHHTT-SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC--------
T ss_pred -ccCCCCEEEECcHHHHhCC-CcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcc--------
Confidence 1157899999999986432 23344689999999987642221 23333444432 2357789998531
Q ss_pred HhccCCCCCCChHHHHHHhcccccccCcccCChHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCCCCeEEEEEcCCCHHHH
Q 003311 287 LNFLLPTIFNSVENFEEWFNAPFKDRGQVALTDEEQLLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQK 366 (832)
Q Consensus 287 l~fL~p~~f~~~~~F~~~f~~~~~~~~~~~~~~ee~~~~~~~L~~~L~pfllRR~k~dv~~~LP~k~e~~v~~~ms~~Q~ 366 (832)
+.. + .|... .+.......
T Consensus 364 --------i~~----------~----------------------------------------~p~i~--~v~~~~~~~-- 381 (666)
T 3o8b_A 364 --------VTV----------P----------------------------------------HPNIE--EVALSNTGE-- 381 (666)
T ss_dssp --------CCC----------C----------------------------------------CTTEE--EEECBSCSS--
T ss_pred --------ccc----------C----------------------------------------CcceE--EEeecccch--
Confidence 000 0 00000 000000000
Q ss_pred HHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhcCCeEEEE
Q 003311 367 VYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKSGHRVLLF 446 (832)
Q Consensus 367 ~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~g~kvLIF 446 (832)
.. +. .. ... +. ...+.++|||
T Consensus 382 -----------i~-------------------------~~--~~------------~~~-------l~--~~~~~~vLVF 402 (666)
T 3o8b_A 382 -----------IP-------------------------FY--GK------------AIP-------IE--AIRGGRHLIF 402 (666)
T ss_dssp -----------EE-------------------------ET--TE------------EEC-------GG--GSSSSEEEEE
T ss_pred -----------hH-------------------------HH--Hh------------hhh-------hh--hccCCcEEEE
Confidence 00 00 00 000 00 1147799999
Q ss_pred ecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEE----------
Q 003311 447 SQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI---------- 516 (832)
Q Consensus 447 sq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI---------- 516 (832)
++....++.+...|...|+.+..+||+++.++ |..+.. -+|++|.++++|||+. +++||
T Consensus 403 v~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGIDId-V~~VI~~Gl~~~~Vi 471 (666)
T 3o8b_A 403 CHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYTGD-FDSVIDCNTCVTQTV 471 (666)
T ss_dssp CSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCCCC-BSEEEECCEEEEEEE
T ss_pred eCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCCCC-CcEEEecCccccccc
Confidence 99999999999999999999999999999764 443333 4799999999999986 99988
Q ss_pred EeC-----------CCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHH
Q 003311 517 IFD-----------SDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 555 (832)
Q Consensus 517 ~~D-----------~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siE 555 (832)
+|| .|-++..|.||+||++| |..- . |.|++....+
T Consensus 472 NyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G--~-i~lvt~~e~~ 517 (666)
T 3o8b_A 472 DFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG--I-YRFVTPGERP 517 (666)
T ss_dssp ECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE--E-EEESCCCCBC
T ss_pred ccccccccccccccCcCCHHHHHHHhccCCC-CCCC--E-EEEEecchhh
Confidence 566 78888999999999999 6443 3 7888876543
No 68
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.69 E-value=2.4e-16 Score=162.07 Aligned_cols=133 Identities=23% Similarity=0.280 Sum_probs=115.4
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
.+.|+..|.+++.. ..+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+.+... +|++|.
T Consensus 15 ~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT~ 89 (212)
T 3eaq_A 15 VRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVATD 89 (212)
T ss_dssp TTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEECT
T ss_pred HHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEecC
Confidence 46799999999975 3578999999999999999999999999999999999999999999999998765 799999
Q ss_pred ccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 003311 502 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~ 563 (832)
++++|||++.+++||+||+||++..+.|++||++|.|+. -.+|.|++.. |...+..+.
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~--g~~~~l~~~~--~~~~~~~i~ 147 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPR--ERRDVEALE 147 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC----BEEEEEECGG--GHHHHHHHH
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCC--CeEEEEEchh--HHHHHHHHH
Confidence 999999999999999999999999999999999999966 4566777665 344444443
No 69
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.69 E-value=7.9e-15 Score=175.22 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=110.1
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
+++..|...|......+.++||||.....++.|..+|...|+++..+||.++..+|..+++.|+.+... +|++|.++
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~~l 499 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINLL 499 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccChh
Confidence 456666666666667889999999999999999999999999999999999999999999999987765 79999999
Q ss_pred ccccCcccCCeEEEeCC-----CCChhhHHHHhhhccccCCcCcEEEEEEEeCCCH
Q 003311 504 GLGLNLQTADTVIIFDS-----DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~-----~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~si 554 (832)
++|+|++.++.||++|. ++++..++|++||++|.|. -.++.|+...+.
T Consensus 500 ~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~~ 552 (664)
T 1c4o_A 500 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVSE 552 (664)
T ss_dssp CTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCCH
T ss_pred hcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCCH
Confidence 99999999999999998 8999999999999999863 356667766553
No 70
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.68 E-value=2.8e-16 Score=159.49 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=114.0
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHh---cCCCCCEEEEeCC-CchHHHHHHHHhhCC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN---KGVTGPHVIVAPK-AVLPNWINEFSTWAP 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~---~~~~~p~LIV~P~-sll~qW~~E~~k~~p 188 (832)
..|+|||.+++.+++. +.++|+..+||+|||++++..+...+.. ......+|||||. .++.||.+++.++++
T Consensus 22 ~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 22 TTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP 97 (207)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh
Confidence 4899999999998875 7889999999999999876555444322 1234579999998 788999999999998
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCC--hhhHHHHHHHccc
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKN--HECALAKTISGYQ 264 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN--~~sk~~kal~~l~ 264 (832)
...+..+.|............ ..++|+|+|++.+...... +....+++||+||||++.+ ....+...+..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~ 173 (207)
T 2gxq_A 98 HLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP 173 (207)
T ss_dssp TSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSC
T ss_pred cceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCC
Confidence 888887777654332222111 3688999999998765432 2234688999999999843 3344555555554
Q ss_pred -cceEEEeeccCC
Q 003311 265 -IQRRLLLTGTPI 276 (832)
Q Consensus 265 -~~~rllLTGTPl 276 (832)
..+.+++||||-
T Consensus 174 ~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 174 PSRQTLLFSATLP 186 (207)
T ss_dssp TTSEEEEECSSCC
T ss_pred ccCeEEEEEEecC
Confidence 456899999983
No 71
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.67 E-value=4.7e-16 Score=159.80 Aligned_cols=162 Identities=12% Similarity=0.139 Sum_probs=115.6
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC---CC
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---PS 189 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~---p~ 189 (832)
.|+|||.+++..++. +.++|++.+||+|||++++..+...+.......++|||||. .++.||.+++.++. |+
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 699999999998876 67899999999999998877766554433334489999997 78899999999886 46
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCCh-h--hHHHHHHHccc
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH-E--CALAKTISGYQ 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~-~--sk~~kal~~l~ 264 (832)
..+.++.|......... .+.. ..++|+|+|++.+...... +....+++|||||||++... . ..+...+..+.
T Consensus 112 ~~v~~~~g~~~~~~~~~-~~~~--~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~ 188 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEE-VLKK--NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 188 (220)
T ss_dssp CCEEEESCCSCHHHHHH-HHHH--SCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC
T ss_pred ceEEEEeCCCChHHHHH-HHhc--CCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC
Confidence 78888888654333221 1111 4679999999998764332 22236789999999998542 2 23333444443
Q ss_pred -cceEEEeeccCCCCCHHHH
Q 003311 265 -IQRRLLLTGTPIQNSLQEL 283 (832)
Q Consensus 265 -~~~rllLTGTPlqN~l~EL 283 (832)
..+++++||||- +.+.++
T Consensus 189 ~~~~~i~~SAT~~-~~~~~~ 207 (220)
T 1t6n_A 189 HEKQVMMFSATLS-KEIRPV 207 (220)
T ss_dssp SSSEEEEEESCCC-TTTHHH
T ss_pred CcCeEEEEEeecC-HHHHHH
Confidence 567899999984 334443
No 72
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.49 E-value=4.2e-18 Score=168.81 Aligned_cols=131 Identities=20% Similarity=0.296 Sum_probs=113.1
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
+.|+..|..++.. ..+.++||||++...++.+...|...|+.+..++|+++..+|..+++.|+.+... +|++|.+
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDV 89 (170)
Confidence 5688888888876 3567999999999999999999999999999999999999999999999987655 7999999
Q ss_pred cccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 003311 503 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 562 (832)
Q Consensus 503 gg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~ 562 (832)
+++|||++.+++||+||+|||+..+.|++||++|.|+...| +.|++.. |..++...
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~~ 145 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTA--ISLVEAH--DHLLLGKV 145 (170)
Confidence 99999999999999999999999999999999999987665 4444443 33444333
No 73
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=162.73 Aligned_cols=155 Identities=19% Similarity=0.258 Sum_probs=104.4
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhc---CCCCCEEEEeCC-CchHH-HHHHHHhh
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK---GVTGPHVIVAPK-AVLPN-WINEFSTW 186 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~---~~~~p~LIV~P~-sll~q-W~~E~~k~ 186 (832)
+.+|+|||.+++.+++. +.++|+.++||+|||++++.++..++... ...+++|||||. .++.| |.+++.++
T Consensus 31 ~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 35899999999998875 67899999999999999988877665432 235689999998 66788 99999998
Q ss_pred CC-CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--------HhhcCceEEEEeCCcccCChhh--H
Q 003311 187 AP-SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--------LKKVQWIYMIVDEGHRLKNHEC--A 255 (832)
Q Consensus 187 ~p-~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--------L~~~~w~~vIiDEaHriKN~~s--k 255 (832)
.+ ...+..+.|............ ..++|+|+||+.+...... +....|++|||||||++..... .
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~ 182 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNN 182 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHH
T ss_pred hccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHH
Confidence 75 467777777543221111111 3578999999999775443 2234789999999999964321 1
Q ss_pred H-HHHHHcc--------------ccceEEEeecc
Q 003311 256 L-AKTISGY--------------QIQRRLLLTGT 274 (832)
Q Consensus 256 ~-~kal~~l--------------~~~~rllLTGT 274 (832)
+ ...+... ...++++||||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 183 IMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 1 1111111 44688999998
No 74
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.65 E-value=1.3e-14 Score=169.38 Aligned_cols=123 Identities=20% Similarity=0.231 Sum_probs=103.2
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
...|+..|.+.+......|.+|||||.+....+.|...|...|++...++|.....+|.-+...|..+ . ++|+|.
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~---VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--M---VTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--C---EEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--e---EEEEcc
Confidence 34688999999988878899999999999999999999999999999999985555555455666654 2 799999
Q ss_pred ccccccCcc--------cCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeC
Q 003311 502 AGGLGLNLQ--------TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 551 (832)
Q Consensus 502 agg~GLNL~--------~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~ 551 (832)
.+|+|+|+. +..+||.++.|-++..|.|++||++|.|.+-. .+.|++.
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~--a~~fvsl 586 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGE--SIFFLSL 586 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCE--EEEEEET
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCee--EEEEech
Confidence 999999997 56799999999999999999999999986554 3334444
No 75
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.65 E-value=1e-15 Score=155.43 Aligned_cols=156 Identities=15% Similarity=0.093 Sum_probs=112.6
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC---
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--- 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--- 188 (832)
..|+|||.+++..++. +.+.++..+||+|||++++..+...........++|||||. .++.||.+++.++..
T Consensus 24 ~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 99 (206)
T 1vec_A 24 EKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG 99 (206)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 3799999999998875 68899999999999988765555443333334579999997 678999999988763
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCCh--hhHHHHHHHccc
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTISGYQ 264 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~--~sk~~kal~~l~ 264 (832)
+..+..+.|........... ...++|+|+|++.+...... +....+++||+||||++... ...+...+..++
T Consensus 100 ~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~ 175 (206)
T 1vec_A 100 GAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP 175 (206)
T ss_dssp SCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSC
T ss_pred CceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCC
Confidence 56777777765544332211 25789999999998664331 12236789999999998653 233444445554
Q ss_pred -cceEEEeeccCC
Q 003311 265 -IQRRLLLTGTPI 276 (832)
Q Consensus 265 -~~~rllLTGTPl 276 (832)
..+++++|||+-
T Consensus 176 ~~~~~l~~SAT~~ 188 (206)
T 1vec_A 176 KNRQILLYSATFP 188 (206)
T ss_dssp TTCEEEEEESCCC
T ss_pred ccceEEEEEeeCC
Confidence 567899999983
No 76
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.64 E-value=2.4e-15 Score=158.32 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=114.1
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 189 (832)
..|+|||.+++..++. +.+.|+..+||+|||++++..+...+........+|||||. .++.||.+++.+++. +
T Consensus 64 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 139 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG 139 (249)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 4899999999998875 78899999999999999766665544444444579999997 778999999999864 4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHH---hhcCceEEEEeCCcccCCh--hhHHHHHHHccc
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL---KKVQWIYMIVDEGHRLKNH--ECALAKTISGYQ 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L---~~~~w~~vIiDEaHriKN~--~sk~~kal~~l~ 264 (832)
+.+.++.|........... ...++|+|+|++.+....... .-..+++|||||||++.+. ...+...+..+.
T Consensus 140 ~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~ 215 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP 215 (249)
T ss_dssp CCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSC
T ss_pred eeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCC
Confidence 6667776654433222211 157899999999997754432 2235789999999998543 344555556664
Q ss_pred -cceEEEeeccCC
Q 003311 265 -IQRRLLLTGTPI 276 (832)
Q Consensus 265 -~~~rllLTGTPl 276 (832)
..+++++|||+-
T Consensus 216 ~~~~~l~~SAT~~ 228 (249)
T 3ber_A 216 RDRKTFLFSATMT 228 (249)
T ss_dssp SSSEEEEEESSCC
T ss_pred CCCeEEEEeccCC
Confidence 567899999984
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.64 E-value=1.5e-15 Score=157.44 Aligned_cols=153 Identities=15% Similarity=0.136 Sum_probs=111.2
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC---CC
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---PS 189 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~---p~ 189 (832)
.|+|||.+++..++. +.+.|+..+||+|||++++..+...+.......++|||||. .++.||.+++.++. ++
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 699999999998775 78899999999999998654443333222334689999997 78899999999986 36
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCCh---hhHHHHHHHccc
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH---ECALAKTISGYQ 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~---~sk~~kal~~l~ 264 (832)
+.+.++.|......... . ...++|+|+|++.+...... +....+++|||||||++.+. ...+...+..++
T Consensus 122 ~~~~~~~g~~~~~~~~~-~----~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~ 196 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKT-R----LKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP 196 (230)
T ss_dssp CCEEEECTTSCHHHHHH-H----TTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEeCCCCHHHHHH-h----ccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCC
Confidence 77888887654332211 1 14689999999998764321 22236789999999999543 344445556665
Q ss_pred -cceEEEeeccC
Q 003311 265 -IQRRLLLTGTP 275 (832)
Q Consensus 265 -~~~rllLTGTP 275 (832)
..+++++|||+
T Consensus 197 ~~~~~l~lSAT~ 208 (230)
T 2oxc_A 197 ASKQMLAVSATY 208 (230)
T ss_dssp SSCEEEEEESCC
T ss_pred CCCeEEEEEecc
Confidence 55689999996
No 78
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.63 E-value=2.6e-15 Score=156.07 Aligned_cols=155 Identities=14% Similarity=0.177 Sum_probs=112.7
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhc----CCCCCEEEEeCC-CchHHHHHHHHhhC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK----GVTGPHVIVAPK-AVLPNWINEFSTWA 187 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~----~~~~p~LIV~P~-sll~qW~~E~~k~~ 187 (832)
..|+|||.+++.+++. +.+.|++.+||+|||++++..+...+... .....+|||||. .++.||.+++.+++
T Consensus 46 ~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 4789999999998875 78899999999999998766554433221 224578999997 78899999999997
Q ss_pred CC--ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH---HhhcCceEEEEeCCcccCCh--hhHHHHHH
Q 003311 188 PS--IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKNH--ECALAKTI 260 (832)
Q Consensus 188 p~--~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~---L~~~~w~~vIiDEaHriKN~--~sk~~kal 260 (832)
+. +.+..+.|.......... . ..++|+|+|++.+...... +....+++|||||||++.+. ...+...+
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~-~----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~ 196 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAER-I----NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVI 196 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHHH-H----TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHH
T ss_pred CCCCeeEEEEECCCCHHHHHHh-C----CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHH
Confidence 54 677777776543322211 1 5789999999999765433 22346889999999998653 34555566
Q ss_pred Hccc-cceEEEeeccCC
Q 003311 261 SGYQ-IQRRLLLTGTPI 276 (832)
Q Consensus 261 ~~l~-~~~rllLTGTPl 276 (832)
..+. ..++++||||+-
T Consensus 197 ~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 197 ENLPKKRQTLLFSATQT 213 (236)
T ss_dssp HTSCTTSEEEEEESSCC
T ss_pred HhCCCCCeEEEEEeeCC
Confidence 6664 456899999973
No 79
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.63 E-value=8.3e-16 Score=158.05 Aligned_cols=162 Identities=17% Similarity=0.093 Sum_probs=114.1
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC---
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--- 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--- 188 (832)
.+|+|||.+++..++. +.++|++.+||+|||++++..+...+........+|||||. .++.||.+++.++..
T Consensus 25 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 100 (219)
T 1q0u_A 25 YKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 100 (219)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcc
Confidence 4799999999998886 78899999999999998765555443333334579999997 788999999988864
Q ss_pred ---CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCCh--hhHHHHHHH
Q 003311 189 ---SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTIS 261 (832)
Q Consensus 189 ---~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~--~sk~~kal~ 261 (832)
...+..+.|......... .-...++|+|+|++.+...... +....+.+|||||||++.+. ...+...+.
T Consensus 101 ~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~ 176 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQKALE----KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAA 176 (219)
T ss_dssp GGGCCCEEEECCCSHHHHTTC----CCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHH
T ss_pred cccceEEEEEeCCCCHHHHHH----HcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHH
Confidence 456666666554322110 0114678999999998764332 22236789999999998643 344555556
Q ss_pred ccc-cceEEEeeccCCCCCHHHH
Q 003311 262 GYQ-IQRRLLLTGTPIQNSLQEL 283 (832)
Q Consensus 262 ~l~-~~~rllLTGTPlqN~l~EL 283 (832)
.+. ..+++++|||+ .+.+.++
T Consensus 177 ~~~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 177 RMPKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp TSCTTCEEEEEESCC-CGGGHHH
T ss_pred hCCcccEEEEEecCC-CHHHHHH
Confidence 664 45689999997 3444443
No 80
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.61 E-value=3.8e-15 Score=161.04 Aligned_cols=133 Identities=20% Similarity=0.264 Sum_probs=113.1
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
.+.|+..|.+++.... +.++||||.....++.+...|...|+.+..+||+++..+|..+++.|+.+... +|++|.
T Consensus 12 ~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEECS
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEec
Confidence 4679999999997753 78999999999999999999999999999999999999999999999988766 799999
Q ss_pred ccccccCcccCCeEEEeCCCCChhhHHHHhhhccccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 003311 502 AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAK 563 (832)
Q Consensus 502 agg~GLNL~~ad~VI~~D~~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~siEe~Il~~~~ 563 (832)
++++|||++.+++||+||+||++..|.|++||++|.|+. -.+|.|++... ...+..+.
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~e--~~~~~~ie 144 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPRE--RRDVEALE 144 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-------CEEEEEECSST--HHHHHHHH
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCC--ceEEEEeChHH--HHHHHHHH
Confidence 999999999999999999999999999999999999976 46677777653 34444433
No 81
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.61 E-value=3.2e-15 Score=153.82 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=106.9
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 189 (832)
..|+|||.+++..++. +.++|++.+||+|||++++..+...+.......++|||||. .++.||.+++.++++ +
T Consensus 35 ~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 110 (224)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccC
Confidence 4799999999998875 77899999999999998544443333333345589999997 778999999999875 4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCC--hhhHHHHHHHccc-
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKN--HECALAKTISGYQ- 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN--~~sk~~kal~~l~- 264 (832)
..+..+.|......... ....++|+|+|++.+...... +....+.+|||||||++.+ ....+...+..+.
T Consensus 111 ~~~~~~~g~~~~~~~~~-----~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~ 185 (224)
T 1qde_A 111 IKVHACIGGTSFVEDAE-----GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP 185 (224)
T ss_dssp CCEEEECC---------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT
T ss_pred ceEEEEeCCcchHHHHh-----cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCc
Confidence 66777777554322211 113489999999998754322 1223578999999999854 3334455555553
Q ss_pred cceEEEeeccCC
Q 003311 265 IQRRLLLTGTPI 276 (832)
Q Consensus 265 ~~~rllLTGTPl 276 (832)
..++++||||+-
T Consensus 186 ~~~~i~lSAT~~ 197 (224)
T 1qde_A 186 TTQVVLLSATMP 197 (224)
T ss_dssp TCEEEEEESSCC
T ss_pred cCeEEEEEeecC
Confidence 456899999984
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.60 E-value=3.3e-14 Score=169.79 Aligned_cols=125 Identities=22% Similarity=0.195 Sum_probs=109.9
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
+++..|...|......|.++||||.....++.|..+|...|+++..+||.++..+|..+++.|+.+... +|++|.++
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~l 505 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINLL 505 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecchh
Confidence 455666666666667789999999999999999999999999999999999999999999999987665 79999999
Q ss_pred ccccCcccCCeEEEeCC-----CCChhhHHHHhhhccccCCcCcEEEEEEEeCCCH
Q 003311 504 GLGLNLQTADTVIIFDS-----DWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSI 554 (832)
Q Consensus 504 g~GLNL~~ad~VI~~D~-----~wNp~~~~QAigRahRiGQ~k~V~V~rLit~~si 554 (832)
++|+|++.+++||++|. ++++..++|++||++|. ++-.++.|++..+.
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---AEGRVIMYADKITK 558 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCH
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCH
Confidence 99999999999999998 89999999999999996 34556777877653
No 83
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.59 E-value=5.9e-15 Score=155.13 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=110.5
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC---------CCCCEEEEeCC-CchHHHHHH
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG---------VTGPHVIVAPK-AVLPNWINE 182 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~---------~~~p~LIV~P~-sll~qW~~E 182 (832)
..|+|||.+++..++. +.+.|++.+||+|||++++..+...+.... ....+|||||. .++.||.++
T Consensus 44 ~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 4799999999998876 778999999999999987766554443221 23479999997 788999999
Q ss_pred HHhhCC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCCh--hhHH
Q 003311 183 FSTWAP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECAL 256 (832)
Q Consensus 183 ~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~--~sk~ 256 (832)
+.++.. .+.+..+.|.......... . ...++|+|+|++.+...... +.-..+.+|||||||++.+. ...+
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~ 195 (253)
T 1wrb_A 120 SQKFSLNTPLRSCVVYGGADTHSQIRE-V---QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQI 195 (253)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHHHH-H---SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred HHHHhccCCceEEEEECCCCHHHHHHH-h---CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHH
Confidence 999864 3566666665443322221 1 15689999999999765332 12235689999999998543 3445
Q ss_pred HHHHHcc--c---cceEEEeeccCC
Q 003311 257 AKTISGY--Q---IQRRLLLTGTPI 276 (832)
Q Consensus 257 ~kal~~l--~---~~~rllLTGTPl 276 (832)
...+..+ . ...++++||||-
T Consensus 196 ~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 196 RKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp HHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred HHHHhhccCCCCCCcEEEEEEEeCC
Confidence 5555533 2 346899999973
No 84
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.59 E-value=4.6e-15 Score=154.64 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=108.0
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP--S 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 189 (832)
..|+|||.+++..++. +.++|++.+||+|||++++..+...+.......++|||||. .++.||.+++.+++. .
T Consensus 51 ~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMG 126 (237)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcC
Confidence 3699999999998875 77899999999999998765555444333334589999997 788999999999875 4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccC--ChhhHHHHHHHccc-
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLK--NHECALAKTISGYQ- 264 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriK--N~~sk~~kal~~l~- 264 (832)
..+..+.|.......... +.. +.++|+|+|++.+...... +....+.+|||||||++. +....+...+..+.
T Consensus 127 ~~~~~~~g~~~~~~~~~~-l~~--~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~ 203 (237)
T 3bor_A 127 ATCHACIGGTNVRNEMQK-LQA--EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 203 (237)
T ss_dssp CCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCT
T ss_pred ceEEEEECCCchHHHHHH-Hhc--CCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCC
Confidence 556666665443322211 111 4489999999998764322 222357899999999984 33445556666664
Q ss_pred cceEEEeeccCC
Q 003311 265 IQRRLLLTGTPI 276 (832)
Q Consensus 265 ~~~rllLTGTPl 276 (832)
....+++|||+-
T Consensus 204 ~~~~i~~SAT~~ 215 (237)
T 3bor_A 204 SIQVVLLSATMP 215 (237)
T ss_dssp TCEEEEECSSCC
T ss_pred CCeEEEEEEecC
Confidence 456799999984
No 85
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.54 E-value=5.9e-14 Score=144.97 Aligned_cols=155 Identities=13% Similarity=0.188 Sum_probs=106.7
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHh------cCCCCCEEEEeCC-CchHHHHHHHHh
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLEN------KGVTGPHVIVAPK-AVLPNWINEFST 185 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~------~~~~~p~LIV~P~-sll~qW~~E~~k 185 (832)
.+|+|||.+++..++. +.+.|+..+||+|||+.++..+...+.. ......+|||||. .+..||.+++.+
T Consensus 41 ~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 116 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116 (228)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 3899999999988775 7889999999999999876554443321 1234578999997 678999999999
Q ss_pred hC-CCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCCh--hhHHHHHH
Q 003311 186 WA-PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTI 260 (832)
Q Consensus 186 ~~-p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~--~sk~~kal 260 (832)
+. ++..+..+.|........... . ..++|+|+|++.+...... +.-.++.+|||||||++.+. ...+...+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~ 192 (228)
T 3iuy_A 117 YSYKGLKSICIYGGRNRNGQIEDI--S--KGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL 192 (228)
T ss_dssp HCCTTCCEEEECC------CHHHH--H--SCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHH
T ss_pred hcccCceEEEEECCCChHHHHHHh--c--CCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHH
Confidence 85 456677666654433222111 1 5689999999998764321 11235789999999998543 34455555
Q ss_pred Hccc-cceEEEeeccC
Q 003311 261 SGYQ-IQRRLLLTGTP 275 (832)
Q Consensus 261 ~~l~-~~~rllLTGTP 275 (832)
..+. ....+++|||+
T Consensus 193 ~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 193 LDVRPDRQTVMTSATW 208 (228)
T ss_dssp HHSCSSCEEEEEESCC
T ss_pred HhCCcCCeEEEEEeeC
Confidence 5554 45679999996
No 86
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=145.40 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=109.9
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhc----CCCCCEEEEeCC-CchHHHHHHHHhhC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK----GVTGPHVIVAPK-AVLPNWINEFSTWA 187 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~----~~~~p~LIV~P~-sll~qW~~E~~k~~ 187 (832)
..|+|+|.+++..++. +.+.|++.+||+|||+.++..+...+... .....+|||+|. .++.||.+++.+++
T Consensus 75 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 150 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM 150 (262)
T ss_dssp CBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 3699999999988876 67889999999999999765554444321 124568999997 78899999999987
Q ss_pred C--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHH---hhcCceEEEEeCCcccCCh--hhHHHHHH
Q 003311 188 P--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYL---KKVQWIYMIVDEGHRLKNH--ECALAKTI 260 (832)
Q Consensus 188 p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L---~~~~w~~vIiDEaHriKN~--~sk~~kal 260 (832)
. ...+..+.|.......... .. ..++|+|+|++.+....... .-..+.+|||||||++... ...+...+
T Consensus 151 ~~~~~~~~~~~g~~~~~~~~~~-~~---~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~ 226 (262)
T 3ly5_A 151 THHVHTYGLIMGGSNRSAEAQK-LG---NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII 226 (262)
T ss_dssp TTCCSCEEEECSSSCHHHHHHH-HH---HCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHH
T ss_pred hhcCceEEEEECCCCHHHHHHH-hc---CCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHH
Confidence 5 3455566665443322221 11 34899999999987654332 2235789999999998543 34445555
Q ss_pred Hccc-cceEEEeeccCC
Q 003311 261 SGYQ-IQRRLLLTGTPI 276 (832)
Q Consensus 261 ~~l~-~~~rllLTGTPl 276 (832)
..+. ....++||||+-
T Consensus 227 ~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 227 KLLPTRRQTMLFSATQT 243 (262)
T ss_dssp HHSCSSSEEEEECSSCC
T ss_pred HhCCCCCeEEEEEecCC
Confidence 5554 456899999974
No 87
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.51 E-value=7.4e-14 Score=145.85 Aligned_cols=156 Identities=16% Similarity=0.166 Sum_probs=106.3
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhc-CCCCCEEEEeCC-CchHHHHHHHHhhCCC-
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPK-AVLPNWINEFSTWAPS- 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~-~~~~p~LIV~P~-sll~qW~~E~~k~~p~- 189 (832)
..|+|||.+++..++. +.+.|+..+||+|||++++..+...+... .....+|||||. .++.||.+++.+++..
T Consensus 50 ~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 125 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT 125 (245)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 3699999999988775 77899999999999998765554444322 233469999997 7889999999999753
Q ss_pred -ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH----HhhcCceEEEEeCCcccCC-----hhhHHHHH
Q 003311 190 -IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY----LKKVQWIYMIVDEGHRLKN-----HECALAKT 259 (832)
Q Consensus 190 -~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~----L~~~~w~~vIiDEaHriKN-----~~sk~~ka 259 (832)
..+..+.|........ .......++|+|+|++.+...... +.-.++.+|||||||++.. ....+...
T Consensus 126 ~~~~~~~~~~~~~~~~~---~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i 202 (245)
T 3dkp_A 126 GFRIHMIHKAAVAAKKF---GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASI 202 (245)
T ss_dssp CCCEECCCHHHHHHTTT---STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHH
T ss_pred CceEEEEecCccHHHHh---hhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHH
Confidence 4455444432211110 001125679999999999765432 1223578999999999854 22334444
Q ss_pred HHcc--ccceEEEeeccC
Q 003311 260 ISGY--QIQRRLLLTGTP 275 (832)
Q Consensus 260 l~~l--~~~~rllLTGTP 275 (832)
+..+ ...+.++||||+
T Consensus 203 ~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 203 FLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHHCCCTTCEEEEEESSC
T ss_pred HHhcCCCCcEEEEEeccC
Confidence 4443 345789999998
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.50 E-value=2.2e-13 Score=142.30 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=108.7
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhc-----CCCCCEEEEeCC-CchHHHHHHHHhh
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-----GVTGPHVIVAPK-AVLPNWINEFSTW 186 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~-----~~~~p~LIV~P~-sll~qW~~E~~k~ 186 (832)
..|+|||.+++..++. +.+.|+..+||+|||+.++..+...+... .....+|||||. .+..||.+.+.++
T Consensus 50 ~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 3699999999998876 78899999999999999765554444321 234568999997 6788999988887
Q ss_pred CC--CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH--HhhcCceEEEEeCCcccCCh--hhHHHHHH
Q 003311 187 AP--SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY--LKKVQWIYMIVDEGHRLKNH--ECALAKTI 260 (832)
Q Consensus 187 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~--L~~~~w~~vIiDEaHriKN~--~sk~~kal 260 (832)
+. ++.+..+.|.......... +. ..++|+|+|++.+...... +.-.++.+|||||||++-.. ...+...+
T Consensus 126 ~~~~~~~~~~~~g~~~~~~~~~~-~~---~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~ 201 (242)
T 3fe2_A 126 CRACRLKSTCIYGGAPKGPQIRD-LE---RGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIV 201 (242)
T ss_dssp HHHTTCCEEEECTTSCHHHHHHH-HH---HCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHH
T ss_pred HhhcCceEEEEECCCChHHHHHH-hc---CCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHH
Confidence 52 4566666665433322221 11 3588999999998765432 12236789999999998543 34444555
Q ss_pred Hcc-ccceEEEeeccC
Q 003311 261 SGY-QIQRRLLLTGTP 275 (832)
Q Consensus 261 ~~l-~~~~rllLTGTP 275 (832)
..+ .....+++|||+
T Consensus 202 ~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 202 DQIRPDRQTLMWSATW 217 (242)
T ss_dssp TTSCSSCEEEEEESCC
T ss_pred HhCCccceEEEEEeec
Confidence 555 345679999996
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.39 E-value=7.8e-12 Score=146.09 Aligned_cols=131 Identities=19% Similarity=0.222 Sum_probs=83.4
Q ss_pred CCCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCC
Q 003311 111 QGGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPS 189 (832)
Q Consensus 111 ~~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~ 189 (832)
.|.++||+|.+.+.-+.....++.++|+..+||+|||+.++..+.. . .+++||++|+ .+..||.+++.+..
T Consensus 4 ~~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~---~---~~~~~~~~~t~~l~~q~~~~~~~l~-- 75 (540)
T 2vl7_A 4 LKLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ---L---KKKVLIFTRTHSQLDSIYKNAKLLG-- 75 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH---H---TCEEEEEESCHHHHHHHHHHHGGGT--
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh---C---CCcEEEEcCCHHHHHHHHHHHHhcC--
Confidence 3568999999998877777777889999999999999876544421 1 3589999997 67899999998853
Q ss_pred ceEEEEcCChhH--------H-H-------H---------------HHHHH------------HhhcCCccEEecCHHHH
Q 003311 190 IAAVVYDGRPDE--------R-K-------A---------------MREEF------------FSERGRFNVLITHYDLI 226 (832)
Q Consensus 190 ~~v~~~~g~~~~--------r-~-------~---------------~~~~~------------~~~~~~~dVvItTye~l 226 (832)
+++.+..|.... . . . ..... .......+|||+||..+
T Consensus 76 ~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l 155 (540)
T 2vl7_A 76 LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYL 155 (540)
T ss_dssp CCEEEC---------------------------------------------------------CTTGGGCSEEEEETHHH
T ss_pred CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHh
Confidence 334444432210 0 0 0 00000 00113469999999999
Q ss_pred HHhHH--HHh-------hcCceEEEEeCCccc
Q 003311 227 MRDRQ--YLK-------KVQWIYMIVDEGHRL 249 (832)
Q Consensus 227 ~~d~~--~L~-------~~~w~~vIiDEaHri 249 (832)
..+.. .+. .....+|||||||++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl 187 (540)
T 2vl7_A 156 FQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNL 187 (540)
T ss_dssp HSHHHHHHHSCSSTTSCCGGGEEEEETTGGGG
T ss_pred cCHHHHHhhCcccccccCcCCCEEEEEccccH
Confidence 87543 222 135679999999999
No 90
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.33 E-value=8e-11 Score=140.15 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=91.4
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchH----HHHHHHHhhC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLP----NWINEFSTWA 187 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~----qW~~E~~k~~ 187 (832)
|..++|-|..|+--++. +. |....||.|||+++...+. +..-. ...++||||+..|. +|...|.+++
T Consensus 77 G~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~-L~aL~--G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVA-LNALT--GKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp CCCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHH-HHHTT--CSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHH-HHHHh--CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 45889999999976654 43 8889999999997644332 21111 23689999986553 3777777777
Q ss_pred CCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHh-H-HH-------Hhhc---CceEEEEeCCcccCChhhH
Q 003311 188 PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRD-R-QY-------LKKV---QWIYMIVDEGHRLKNHECA 255 (832)
Q Consensus 188 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d-~-~~-------L~~~---~w~~vIiDEaHriKN~~sk 255 (832)
++.+.+..|...... +... ...+|++.|...+.-+ . .. +... ...++||||+|++--.
T Consensus 148 -GLsv~~i~Gg~~~~~--r~~a----y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD--- 217 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAE--RRKA----YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID--- 217 (997)
T ss_dssp -TCCEEECCTTCCHHH--HHHH----HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS---
T ss_pred -CCeEEEEeCCCCHHH--HHHH----cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh---
Confidence 466666555433211 1111 2579999999887321 1 11 1222 5789999999965321
Q ss_pred HHHHHHccccceEEEeeccCCCCCHHHHHHH
Q 003311 256 LAKTISGYQIQRRLLLTGTPIQNSLQELWSL 286 (832)
Q Consensus 256 ~~kal~~l~~~~rllLTGTPlqN~l~EL~sL 286 (832)
.+..-+++|| |.... ..+|..
T Consensus 218 --------eartPLIISg-p~~~~-~~lY~~ 238 (997)
T 2ipc_A 218 --------EARTPLIISG-PAEKA-TDLYYK 238 (997)
T ss_dssp --------STTSCEEEEE-SCSSC-HHHHHH
T ss_pred --------CCCCCeeeeC-CCccc-hHHHHH
Confidence 1222399999 87766 344433
No 91
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.30 E-value=3.3e-12 Score=138.13 Aligned_cols=155 Identities=13% Similarity=0.074 Sum_probs=104.0
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC---C
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA---P 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~---p 188 (832)
..|+|+|.+++..++. ..+.+.|++.++|+|||+..+..+...+........+|||||. .+..|+...+..+. +
T Consensus 113 ~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 4899999999986664 1137889999999999998654443333322333468999997 67788888777764 5
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHH---HhhcCceEEEEeCCcccCC---hhhHHHHHHHc
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQY---LKKVQWIYMIVDEGHRLKN---HECALAKTISG 262 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~---L~~~~w~~vIiDEaHriKN---~~sk~~kal~~ 262 (832)
.+.+.++.|....... .....+|+|+|++.+...... +.-..+.+|||||||++-. ........+..
T Consensus 191 ~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~ 263 (300)
T 3fmo_B 191 ELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 263 (300)
T ss_dssp TCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTT
T ss_pred CcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHh
Confidence 6677776664432111 125678999999998765422 2223578999999999753 22333333444
Q ss_pred cc-cceEEEeeccCC
Q 003311 263 YQ-IQRRLLLTGTPI 276 (832)
Q Consensus 263 l~-~~~rllLTGTPl 276 (832)
+. ....+++|||+-
T Consensus 264 ~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 264 LPRNCQMLLFSATFE 278 (300)
T ss_dssp SCTTCEEEEEESCCC
T ss_pred CCCCCEEEEEeccCC
Confidence 43 356799999983
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.01 E-value=5e-08 Score=115.52 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=60.8
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC--CCc
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--PSI 190 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~--p~~ 190 (832)
++||+|.+.+.-+.....++.++|+..+||+|||+..+..+....... ..+++|++|+ .+..|+.+++.++. ..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 689999999988877777899999999999999999875544333322 3579999997 67888999988763 245
Q ss_pred eEEEEcC
Q 003311 191 AAVVYDG 197 (832)
Q Consensus 191 ~v~~~~g 197 (832)
++++..|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 5555444
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.83 E-value=7.8e-09 Score=120.99 Aligned_cols=134 Identities=17% Similarity=0.207 Sum_probs=94.2
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC--
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-- 188 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p-- 188 (832)
|.++||+|.+.+.-+.....++.++++..+||+|||+..+..+.. ...++||++|+ .+..||.+++.++..
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~ 74 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKR 74 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhc
Confidence 357999999998877777778889999999999999987655543 14589999997 678899999988742
Q ss_pred CceEEEEcCChhH--------------------------------HHHHHHHH---------------HhhcCCccEEec
Q 003311 189 SIAAVVYDGRPDE--------------------------------RKAMREEF---------------FSERGRFNVLIT 221 (832)
Q Consensus 189 ~~~v~~~~g~~~~--------------------------------r~~~~~~~---------------~~~~~~~dVvIt 221 (832)
.+++.+..|...- ...+.... .......+|||+
T Consensus 75 ~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~ 154 (551)
T 3crv_A 75 NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIAL 154 (551)
T ss_dssp CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEE
T ss_pred CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEe
Confidence 4666666663210 00111100 011246799999
Q ss_pred CHHHHHHhHHHHh---hcCceEEEEeCCcccCC
Q 003311 222 HYDLIMRDRQYLK---KVQWIYMIVDEGHRLKN 251 (832)
Q Consensus 222 Tye~l~~d~~~L~---~~~w~~vIiDEaHriKN 251 (832)
||..+..+..... .....+|||||||++-+
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 155 TYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp ETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred CchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9999987642211 12567899999999966
No 94
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.80 E-value=2.2e-08 Score=103.89 Aligned_cols=150 Identities=18% Similarity=0.155 Sum_probs=92.0
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCC--CCCEEEEeCCC-chHHHHHHHHhhCCC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGV--TGPHVIVAPKA-VLPNWINEFSTWAPS 189 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~--~~p~LIV~P~s-ll~qW~~E~~k~~p~ 189 (832)
..+++||.+++..+.. +...++..++|+|||.+...++.......+. ...+|+++|.. +..|..+.+...+..
T Consensus 60 ~p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 60 LPVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp SGGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 3578999999988876 7788999999999997665444433222221 23678888974 455666666655421
Q ss_pred ---ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCccc-CChhh---HHHHHHHc
Q 003311 190 ---IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRL-KNHEC---ALAKTISG 262 (832)
Q Consensus 190 ---~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHri-KN~~s---k~~kal~~ 262 (832)
..+. |.-.... .......+|+|+|++.+.+.... .-.++++|||||||+. -+.+. .+...+..
T Consensus 136 ~~~~~~g-~~~~~~~--------~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 136 EPGKSCG-YSVRFES--------ILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp CTTSSEE-EEETTEE--------ECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred ccCceEE-Eeechhh--------ccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 1111 1100000 00014578999999988775433 2336789999999984 22221 12222233
Q ss_pred cccceEEEeeccCC
Q 003311 263 YQIQRRLLLTGTPI 276 (832)
Q Consensus 263 l~~~~rllLTGTPl 276 (832)
......+++|||+-
T Consensus 206 ~~~~~~il~SAT~~ 219 (235)
T 3llm_A 206 YPEVRIVLMSATID 219 (235)
T ss_dssp CTTSEEEEEECSSC
T ss_pred CCCCeEEEEecCCC
Confidence 45567899999973
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.73 E-value=6.9e-05 Score=89.16 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=54.9
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc-hHHHHHHHHhhC
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINEFSTWA 187 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~ 187 (832)
...|-+.|.+||..++. ...-.|+..+.|+|||.+.+.+|.++...+ .++||++|.+. +++....+....
T Consensus 187 ~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp STTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhcC
Confidence 45799999999998875 222368899999999999999999888753 48999999754 666666665543
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.49 E-value=0.00045 Score=81.79 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=93.5
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc-hHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~p~~~ 191 (832)
..|.+.|.+++..++. +...++..+.|+|||.++..++.++... ...++||++|... +.+-...+.+.. ..
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~~--~~ 250 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG--LK 250 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhcC--Ce
Confidence 4689999999987764 4456888999999999988888877653 2458999999854 455555555432 22
Q ss_pred EEEEcCChh-----------------------------------------HHHHHH---HH-HHhhcCCccEEecCHHHH
Q 003311 192 AVVYDGRPD-----------------------------------------ERKAMR---EE-FFSERGRFNVLITHYDLI 226 (832)
Q Consensus 192 v~~~~g~~~-----------------------------------------~r~~~~---~~-~~~~~~~~dVvItTye~l 226 (832)
++-..+... ...... .. ...-....+||++|...+
T Consensus 251 ~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 251 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp EEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred EEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 221111000 000000 00 000013567888886554
Q ss_pred HHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEeeccCCCC
Q 003311 227 MRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 278 (832)
Q Consensus 227 ~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlqN 278 (832)
.. ..+....|++||||||..+-.+.+ .+..+....+++|-|=|-|-
T Consensus 331 ~~--~~l~~~~fd~viIDEAsQ~~e~~~----li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 331 GD--PRLAKMQFRSILIDESTQATEPEC----MVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp GC--GGGTTCCCSEEEETTGGGSCHHHH----HHHHTTTBSEEEEEECTTSC
T ss_pred cc--hhhhcCCCCEEEEecccccCcHHH----HHHHHhcCCeEEEecChhcc
Confidence 32 235567899999999977655432 12222345789999998773
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.00073 Score=82.14 Aligned_cols=150 Identities=15% Similarity=0.221 Sum_probs=92.2
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc-hHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~p~~~ 191 (832)
..|.+.|.+++..++. +.-.++....|+|||.++..++.++.... ..++||++|... +.+-...+.+.. +.
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~~--~~~ILv~a~tn~A~d~l~~rL~~~g--~~ 430 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKIH--KDRILVCAPSNVAVDHLAAKLRDLG--LK 430 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSHHHHHHHHHHHHHTT--CC
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhCC--CCeEEEEcCcHHHHHHHHHHHHhhC--cc
Confidence 4689999999987763 44468889999999999888888777642 358999999865 455556565542 22
Q ss_pred EEEEcCChh----------------------------------------HHHHHHHH----HHhhcCCccEEecCHHHHH
Q 003311 192 AVVYDGRPD----------------------------------------ERKAMREE----FFSERGRFNVLITHYDLIM 227 (832)
Q Consensus 192 v~~~~g~~~----------------------------------------~r~~~~~~----~~~~~~~~dVvItTye~l~ 227 (832)
++-..+... ....+... ...-....+||++|...+.
T Consensus 431 ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 510 (802)
T 2xzl_A 431 VVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG 510 (802)
T ss_dssp EEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG
T ss_pred EEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC
Confidence 221111000 00000000 0000134578888766543
Q ss_pred HhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEeeccCCC
Q 003311 228 RDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277 (832)
Q Consensus 228 ~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlq 277 (832)
. ..+.. .|++||||||..+..+.. .+..+....+++|-|=|-|
T Consensus 511 ~--~~L~~-~fd~viIDEA~q~~e~~~----li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 511 D--KRLDT-KFRTVLIDESTQASEPEC----LIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp C--TTCCS-CCSEEEETTGGGSCHHHH----HHHHTTTBSEEEEEECTTS
T ss_pred h--HHHhc-cCCEEEEECccccchHHH----HHHHHhCCCEEEEEeCccc
Confidence 2 22444 899999999987754331 2222344578999999876
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.17 E-value=0.0013 Score=79.87 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=91.6
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc-hHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV-LPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~p~~~ 191 (832)
..|.+.|.+++..++. +.-.++....|+|||.++..++..+... ...++||++|... +.+-...+.... +.
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~g--~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG--LK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHhC--cc
Confidence 4789999999987764 4456889999999999988888877753 2458999999865 444555554432 22
Q ss_pred EEEEcCChh-----------------------HHHHHH---------------------HHH-HhhcCCccEEecCHHHH
Q 003311 192 AVVYDGRPD-----------------------ERKAMR---------------------EEF-FSERGRFNVLITHYDLI 226 (832)
Q Consensus 192 v~~~~g~~~-----------------------~r~~~~---------------------~~~-~~~~~~~dVvItTye~l 226 (832)
++-+.+... ....+. ... ..-....+||++|...+
T Consensus 427 vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~ 506 (800)
T 2wjy_A 427 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 506 (800)
T ss_dssp EEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGG
T ss_pred eEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhh
Confidence 221111000 000000 000 00012456777776554
Q ss_pred HHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEeeccCCC
Q 003311 227 MRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQ 277 (832)
Q Consensus 227 ~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlq 277 (832)
.. ..+....|++||||||..+-.+.+ .+..+....+++|-|=|.|
T Consensus 507 ~~--~~l~~~~fd~viIDEAsQ~~e~~~----li~l~~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 507 GD--PRLAKMQFRSILIDESTQATEPEC----MVPVVLGAKQLILVGDHCQ 551 (800)
T ss_dssp GC--TTTTTCCCSEEEETTGGGSCHHHH----HHHHTTTBSEEEEEECTTS
T ss_pred CC--hhhhcCCCCEEEEECCCCCCcHHH----HHHHHhcCCeEEEeccccc
Confidence 32 235566899999999977654431 2222344678999999877
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.12 E-value=0.0017 Score=73.93 Aligned_cols=142 Identities=12% Similarity=0.065 Sum_probs=82.5
Q ss_pred CCchHHHHHHHHHHHHhhccCC-CeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCce
Q 003311 113 GELRAYQLEGLQWMLSLFNNNL-NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~-~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 191 (832)
..|-+-|.+++..++.....+. ..+|....|+|||..+.+++.++...+. ..+++++|......-..+ .. ...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa~~l~~---~~-~~~ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAKKILSK---LS-GKE 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHHHHHHH---HH-SSC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHHHHHHh---hh-ccc
Confidence 4899999999998876544444 6688999999999998888888877542 478999998654332221 11 111
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEe
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLL 271 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllL 271 (832)
+..++. .+. ...........+.... .-....+++|||||+|.+.. ..+...+..+....++++
T Consensus 98 ~~T~h~------~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~iiiDE~~~~~~--~~~~~l~~~~~~~~~~~~ 160 (459)
T 3upu_A 98 ASTIHS------ILK-INPVTYEENVLFEQKE--------VPDLAKCRVLICDEVSMYDR--KLFKILLSTIPPWCTIIG 160 (459)
T ss_dssp EEEHHH------HHT-EEEEECSSCEEEEECS--------CCCCSSCSEEEESCGGGCCH--HHHHHHHHHSCTTCEEEE
T ss_pred hhhHHH------Hhc-cCcccccccchhcccc--------cccccCCCEEEEECchhCCH--HHHHHHHHhccCCCEEEE
Confidence 111110 000 0000000000110000 01113578999999998742 233333355556788999
Q ss_pred eccCCC
Q 003311 272 TGTPIQ 277 (832)
Q Consensus 272 TGTPlq 277 (832)
.|-|-|
T Consensus 161 vGD~~Q 166 (459)
T 3upu_A 161 IGDNKQ 166 (459)
T ss_dssp EECTTS
T ss_pred ECCHHH
Confidence 999877
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.10 E-value=0.00089 Score=78.38 Aligned_cols=132 Identities=17% Similarity=0.124 Sum_probs=83.5
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCce
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIA 191 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 191 (832)
+..|-+.|.+++..++. +...++....|+|||.++.+++..+... ..++++++|.........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHHhHhhhc----cc
Confidence 56899999999988764 5667889999999999887777766553 3589999998766554443211 00
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEe
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLL 271 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllL 271 (832)
...++ .++.... .- +.. ..-....+++|||||+|.+-. ..+...+..+....+++|
T Consensus 256 a~Tih-----------~ll~~~~--~~-------~~~--~~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~~lil 311 (574)
T 3e1s_A 256 ASTVH-----------RLLGYGP--QG-------FRH--NHLEPAPYDLLIVDEVSMMGD--ALMLSLLAAVPPGARVLL 311 (574)
T ss_dssp EEEHH-----------HHTTEET--TE-------ESC--SSSSCCSCSEEEECCGGGCCH--HHHHHHHTTSCTTCEEEE
T ss_pred HHHHH-----------HHHcCCc--ch-------hhh--hhcccccCCEEEEcCccCCCH--HHHHHHHHhCcCCCEEEE
Confidence 11000 0000000 00 000 001123689999999998843 234444566777889999
Q ss_pred eccCCCC
Q 003311 272 TGTPIQN 278 (832)
Q Consensus 272 TGTPlqN 278 (832)
.|-|-|.
T Consensus 312 vGD~~QL 318 (574)
T 3e1s_A 312 VGDTDQL 318 (574)
T ss_dssp EECTTSC
T ss_pred Eeccccc
Confidence 9999873
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.97 E-value=0.014 Score=69.02 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=49.3
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCc-hHHHHHHHHhh
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKAV-LPNWINEFSTW 186 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~-~~~p~LIV~P~sl-l~qW~~E~~k~ 186 (832)
.|-+.|.++|. ......++-...|+|||.+.+.-+.+++...+ .+..+|+|+++.. ..+..+.+...
T Consensus 9 ~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 9 SLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 78899999996 12445577778999999999999999988643 3357999999754 44455555554
No 102
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.83 E-value=0.0032 Score=74.21 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhc-CCCCCEEEEeCCCchHH-HHHHHHhhCCCc--e
Q 003311 116 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENK-GVTGPHVIVAPKAVLPN-WINEFSTWAPSI--A 191 (832)
Q Consensus 116 r~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~-~~~~p~LIV~P~sll~q-W~~E~~k~~p~~--~ 191 (832)
-+.|..++.-++. +...++....|+|||.++..++..+.... ....++++++|...... -.+.+..+...+ .
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 5789999987663 56678999999999988777776665431 22347899999865443 333333221000 0
Q ss_pred EEEEcCChhHHHHHHHHHHhhcCCcc-EEecCHHH--HHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceE
Q 003311 192 AVVYDGRPDERKAMREEFFSERGRFN-VLITHYDL--IMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRR 268 (832)
Q Consensus 192 v~~~~g~~~~r~~~~~~~~~~~~~~d-VvItTye~--l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~r 268 (832)
.....+.+.. ....+ ++-++... +... ......+++||||||+.+. ...+...+..+....+
T Consensus 227 ~~~~~~~~~~-----------~~Tih~ll~~~~~~~~~~~~--~~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 227 DEQKKRIPED-----------ASTLHRLLGAQPGSQRLRHH--AGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHAR 291 (608)
T ss_dssp SCCCCSCSCC-----------CBTTTSCC-----------C--TTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCE
T ss_pred HHHHhccchh-----------hhhhHhhhccCCCchHHHhc--cCCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCCE
Confidence 0000000000 00000 00001000 0000 0122368899999999764 2344555677788899
Q ss_pred EEeeccCCCCC
Q 003311 269 LLLTGTPIQNS 279 (832)
Q Consensus 269 llLTGTPlqN~ 279 (832)
++|.|-|-|--
T Consensus 292 liLvGD~~QL~ 302 (608)
T 1w36_D 292 VIFLGDRDQLA 302 (608)
T ss_dssp EEEEECTTSGG
T ss_pred EEEEcchhhcC
Confidence 99999987654
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.41 E-value=0.062 Score=59.45 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=88.4
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCC-chHHHHHHHHhh---CC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA-VLPNWINEFSTW---AP 188 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~---~p 188 (832)
..|.|||...+..+.. ..-.++.-.-+.|||..+.+++.+..... ....+++++|.. ....+...+..+ .|
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 5899999998876632 34467888899999998877776644432 234688999963 233333454443 33
Q ss_pred C-ce-EEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHH-ccc-
Q 003311 189 S-IA-AVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS-GYQ- 264 (832)
Q Consensus 189 ~-~~-v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~-~l~- 264 (832)
. +. .+....... + .+.. +..-.++++ +...+.....+++|+||+|.+++.. .+..++. .+.
T Consensus 237 ~ll~~~~~~~~~~~----I---~f~n-Gs~i~~lsa------~~~slrG~~~~~viiDE~a~~~~~~-el~~al~~~ls~ 301 (385)
T 2o0j_A 237 DFLQPGIVEWNKGS----I---ELDN-GSSIGAYAS------SPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISS 301 (385)
T ss_dssp TTTSCCEEEECSSE----E---EETT-SCEEEEEEC------SHHHHHTSCCSEEEEESGGGSTTHH-HHHHHHHHHHHS
T ss_pred HhhhhhhccCCccE----E---EeCC-CCEEEEEEC------CCCCccCCCCCEEEechhhhcCCCH-HHHHHHHHHhhc
Confidence 2 11 000000000 0 0000 222123332 3455677889999999999998732 3333332 222
Q ss_pred -cceEEEeeccCCCCCHHHHHHHHhc
Q 003311 265 -IQRRLLLTGTPIQNSLQELWSLLNF 289 (832)
Q Consensus 265 -~~~rllLTGTPlqN~l~EL~sLl~f 289 (832)
...++++++||-..+ -+|.+...
T Consensus 302 ~~~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 302 GRRSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp TTCCEEEEEECCCSSS--HHHHHHHH
T ss_pred CCCCcEEEEeCCCCch--hHHHHHHH
Confidence 357888899996553 55555443
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.19 E-value=0.0084 Score=59.38 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=26.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~ 173 (832)
-++.-+||+|||..++.++..+... ..+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~---g~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLG---KKKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---TCEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeec
Confidence 4678999999999888777665543 2468888876
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.79 E-value=0.037 Score=56.56 Aligned_cols=109 Identities=15% Similarity=0.094 Sum_probs=57.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCC
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGR 215 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 215 (832)
.++.-+||.|||..++.++..+... ..+++++.|.---. .+ ...... .|- ..
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~~~~~d~r---~~-~~i~sr------lG~---------------~~ 66 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKIDTR---SI-RNIQSR------TGT---------------SL 66 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCCGG---GC-SSCCCC------CCC---------------SS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEEeccCch---HH-HHHHHh------cCC---------------Cc
Confidence 3678999999999988887766554 24678887753110 00 011110 010 00
Q ss_pred ccEEecCHHHHHHhHH-HHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEeecc
Q 003311 216 FNVLITHYDLIMRDRQ-YLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGT 274 (832)
Q Consensus 216 ~dVvItTye~l~~d~~-~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGT 274 (832)
..+.+.+.+.+..... .+....+++|||||+|.+....-.....+.. ..-.++++|-
T Consensus 67 ~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~--~gi~Vil~Gl 124 (223)
T 2b8t_A 67 PSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAE--NGFVVIISGL 124 (223)
T ss_dssp CCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEECC
T ss_pred cccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHh--CCCeEEEEec
Confidence 1122333333322111 1222358999999999886532222233322 2567899986
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.29 E-value=0.24 Score=57.93 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=84.2
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhC---
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWA--- 187 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~--- 187 (832)
+..|.|||...+..+. .....++.-.-|.|||..+.+++.+.....+ ...+++++|. .........+..++
T Consensus 161 ~~~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp BCCCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCcCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 3589999999887652 2445778889999999987766666554432 3478999996 33333445555443
Q ss_pred CC-ceE-EEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHH-ccc
Q 003311 188 PS-IAA-VVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTIS-GYQ 264 (832)
Q Consensus 188 p~-~~v-~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~-~l~ 264 (832)
|. +.. ........ + .+.....+.++ + .+...+.....+++|+||+|.+++.. .+..++. .+.
T Consensus 236 p~~~~~~~~~~~~~~----i---~~~nGs~i~~~-s------~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~ 300 (592)
T 3cpe_A 236 PDFLQPGIVEWNKGS----I---ELDNGSSIGAY-A------SSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVIS 300 (592)
T ss_dssp CTTTSCCEEEECSSE----E---EETTSCEEEEE-E------CCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHS
T ss_pred hHhhccccccCCccE----E---EecCCCEEEEE-e------CCCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhc
Confidence 32 110 00000000 0 00000111122 1 12344566788999999999998743 4444443 222
Q ss_pred --cceEEEeeccCCCC
Q 003311 265 --IQRRLLLTGTPIQN 278 (832)
Q Consensus 265 --~~~rllLTGTPlqN 278 (832)
...++++++||-..
T Consensus 301 ~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 301 SGRRSKIIITTTPNGL 316 (592)
T ss_dssp SSSCCEEEEEECCCTT
T ss_pred cCCCceEEEEeCCCCc
Confidence 34789999999554
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.19 E-value=0.02 Score=64.42 Aligned_cols=108 Identities=13% Similarity=0.061 Sum_probs=66.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcC
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERG 214 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~ 214 (832)
.++....|+|||.....++. ..+.||++|. .+...|.+.+.+... . .
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~~----------~--------------~ 211 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANASGI----------I--------------V 211 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTTSC----------C--------------C
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcCc----------c--------------c
Confidence 36788999999987655442 1477999997 566778887754210 0 0
Q ss_pred CccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEeeccCCCC
Q 003311 215 RFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQN 278 (832)
Q Consensus 215 ~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlqN 278 (832)
.-..-+.|++.+...........+++||||||..+- ...+...+....+ .+++|.|-|-|-
T Consensus 212 ~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 212 ATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp CCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred cccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCcccc
Confidence 111335677766543222222348999999998662 2223333344444 899999998763
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.91 E-value=0.11 Score=51.81 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=26.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~ 173 (832)
++.-+||+|||..++.++..+... ..+++|+.|.
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~~~~---g~kV~v~k~~ 45 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRAKIA---KQKIQVFKPE 45 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEec
Confidence 668999999998888777666543 3478888886
No 109
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.91 E-value=0.068 Score=56.55 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=27.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHhcCC-CCCEEEEeCCC
Q 003311 135 NGILADEMGLGKTIQTIALIAYLLENKGV-TGPHVIVAPKA 174 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~l~~~~~~-~~p~LIV~P~s 174 (832)
+.+|..+.|+|||..+-+++..+...... .++++.|.+..
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 46889999999999998887777654322 33555555433
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.72 E-value=0.12 Score=52.22 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=26.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~ 173 (832)
++.-+||.|||..++..+..+... ..++||+.|.
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~ 65 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPC 65 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEec
Confidence 468999999999888877666544 3478998885
No 111
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.27 E-value=0.2 Score=53.48 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=28.9
Q ss_pred CceEEEEeCCcccC-C-hhhHHHHHHHccccceEEEeeccCCC
Q 003311 237 QWIYMIVDEGHRLK-N-HECALAKTISGYQIQRRLLLTGTPIQ 277 (832)
Q Consensus 237 ~w~~vIiDEaHriK-N-~~sk~~kal~~l~~~~rllLTGTPlq 277 (832)
...+|||||+|.+. . ....+...+.......++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 56799999999995 2 33445555555566778888887654
No 112
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.17 E-value=0.25 Score=52.79 Aligned_cols=35 Identities=14% Similarity=-0.072 Sum_probs=25.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
.+.+|..+.|+|||..+-+++..+... ..+++.|.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~ 72 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSS 72 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEE
Confidence 456889999999999887777766554 23555554
No 113
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.16 E-value=0.22 Score=53.76 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHhhccCC--C-eEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 115 LRAYQLEGLQWMLSLFNNNL--N-GILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 115 Lr~yQ~egl~wml~~~~~~~--~-gILaDemGlGKTiqaiali~~l~~~ 160 (832)
++|+|.+.+..+.....++. + -++..+.|+|||..+.+++..+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 57889998888877765543 3 4779999999999999888877643
No 114
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.12 E-value=0.36 Score=57.22 Aligned_cols=68 Identities=16% Similarity=0.072 Sum_probs=49.0
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCc-hHHHHHHHHhhC
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKAV-LPNWINEFSTWA 187 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~-~~~p~LIV~P~sl-l~qW~~E~~k~~ 187 (832)
.|.|-|.++|.. ...+.++....|+|||.+.+.-+.+++...+ ....+|+|+.+.- .....+.+.+..
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999863 2445577788999999999988988887643 3457899988643 444555555543
No 115
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.02 E-value=0.71 Score=45.15 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=26.1
Q ss_pred CceEEEEeCCcccCCh-hhHHHHHHHccccceEEEeeccCC
Q 003311 237 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTPI 276 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~-~sk~~kal~~l~~~~rllLTGTPl 276 (832)
...+|||||+|.+... ...+...+.......++++|+...
T Consensus 102 ~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 5678999999998542 233445555555666777776543
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.42 E-value=0.39 Score=49.12 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=25.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~ 173 (832)
++..+||.|||..+|..+..... ...+++|+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~---~g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEeec
Confidence 66899999999888777654433 34578888885
No 117
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.99 E-value=0.21 Score=50.04 Aligned_cols=40 Identities=20% Similarity=-0.085 Sum_probs=26.6
Q ss_pred HHHHHHHHhhc--cCCCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 121 EGLQWMLSLFN--NNLNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 121 egl~wml~~~~--~~~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
..+..+..... .+.+.+|..+.|+|||..+-+++..+...
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34444444332 34556889999999999887777666543
No 118
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.91 E-value=0.15 Score=47.81 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=24.8
Q ss_pred eEEEEeCCcccCC-hhhHHHHHHHccccceEEEeeccC
Q 003311 239 IYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGTP 275 (832)
Q Consensus 239 ~~vIiDEaHriKN-~~sk~~kal~~l~~~~rllLTGTP 275 (832)
..++|||.|.+.. ....+...+.......+++.|.+.
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 4689999999953 234555666555666677776653
No 119
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.72 E-value=0.27 Score=52.70 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=27.4
Q ss_pred CceEEEEeCCcccCC-hhhHHHHHHHccccceEEEeeccCC
Q 003311 237 QWIYMIVDEGHRLKN-HECALAKTISGYQIQRRLLLTGTPI 276 (832)
Q Consensus 237 ~w~~vIiDEaHriKN-~~sk~~kal~~l~~~~rllLTGTPl 276 (832)
.+.+|||||+|++.. ....+.+.+.......++++++++.
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 567999999999854 2345566666666666777766544
No 120
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.58 E-value=0.71 Score=43.96 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=21.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345688999999999988877766544
No 121
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.49 E-value=1.3 Score=43.78 Aligned_cols=44 Identities=25% Similarity=0.078 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHH
Q 003311 115 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLL 158 (832)
Q Consensus 115 Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~ 158 (832)
-++...+.+...+..-......+|.-+.|+|||..+-+++..+.
T Consensus 27 g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 27 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35555555554444222122457899999999988777665554
No 122
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.26 E-value=0.34 Score=50.46 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=24.7
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCC
Q 003311 132 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 174 (832)
Q Consensus 132 ~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~s 174 (832)
...+.+|..+.|+|||..+-+++..+ ..+++.|....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~~ 86 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVGSE 86 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehHH
Confidence 34556889999999998887665432 33555554433
No 123
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.23 E-value=3.3 Score=44.35 Aligned_cols=45 Identities=7% Similarity=-0.065 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHh-hc--cCCCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 116 RAYQLEGLQWMLSL-FN--NNLNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 116 r~yQ~egl~wml~~-~~--~~~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
|+-|...+...+.. .. .+.+.+|.-++|+|||.++-+++..+...
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 44555555433332 22 23345789999999999998888877654
No 124
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.09 E-value=0.53 Score=50.24 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=25.2
Q ss_pred CceEEEEeCCcccCCh-hhHHHHHHHccccceEEEeecc
Q 003311 237 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGT 274 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~-~sk~~kal~~l~~~~rllLTGT 274 (832)
+|.+|||||+|++... ...+.+.+...+..-+++|+.+
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~ 120 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR 120 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 5789999999999532 2335555665555666666653
No 125
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.00 E-value=1.4 Score=46.46 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=27.2
Q ss_pred CceEEEEeCCcccCCh-hhHHHHHHHccccceEEEeeccCC
Q 003311 237 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTPI 276 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~-~sk~~kal~~l~~~~rllLTGTPl 276 (832)
+..+|||||+|++... ...+.+.+.......+++++++..
T Consensus 110 ~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 110 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 5779999999998532 334555555556667777776654
No 126
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.93 E-value=2.4 Score=40.74 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhhc-----cCCCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 116 RAYQLEGLQWMLSLFN-----NNLNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 116 r~yQ~egl~wml~~~~-----~~~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
.+.|.+++..+..... .+.+.+|.-+.|+|||..+-+++..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~ 65 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK 65 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4678888888776542 34556788999999999888777766533
No 127
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.46 E-value=0.62 Score=49.06 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=26.5
Q ss_pred CceEEEEeCCcccCChh-hHHHHHHHccccceEEEeeccCC
Q 003311 237 QWIYMIVDEGHRLKNHE-CALAKTISGYQIQRRLLLTGTPI 276 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~~-sk~~kal~~l~~~~rllLTGTPl 276 (832)
+..+|||||+|.+.... ..+.+.+.......++++++++.
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 36799999999985422 23445555555667777777653
No 128
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.38 E-value=1.1 Score=45.58 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=24.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 175 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl 175 (832)
.+.+|..+.|+|||..+-++...+ ..+++.+....+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~ 75 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEF 75 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHH
Confidence 345789999999999887776543 236666655443
No 129
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.23 E-value=3.4 Score=39.00 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=21.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
.+.+|..+.|+|||..+-+++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45688999999999988877776654
No 130
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.22 E-value=0.91 Score=49.88 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=25.8
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 179 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW 179 (832)
.+.+|.-+.|+|||..+-+++..+ ..+++.|.+..+...|
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSKY 188 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC----
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhccc
Confidence 456889999999999887765432 3466766665555433
No 131
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.04 E-value=0.18 Score=47.22 Aligned_cols=23 Identities=13% Similarity=-0.008 Sum_probs=18.1
Q ss_pred ccCCCeEEEcCCCCcHHHHHHHH
Q 003311 131 NNNLNGILADEMGLGKTIQTIAL 153 (832)
Q Consensus 131 ~~~~~gILaDemGlGKTiqaial 153 (832)
..+.+.+|.-+.|+|||..|-++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 45667889999999999876444
No 132
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.03 E-value=0.46 Score=50.83 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=23.2
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
.+.+|.-+.|+|||..+-+++..+ ..+++.|.+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~ 84 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSS 84 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEch
Confidence 345889999999999887776543 235555544
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.73 E-value=0.72 Score=50.00 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHhh-cc--CCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 116 RAYQLEGLQWMLSLF-NN--NLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 116 r~yQ~egl~wml~~~-~~--~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
++.+.+.+..++..+ .. ..+.+|.-+.|+|||..+-+++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555554444332 22 234578999999999988777766644
No 134
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.69 E-value=1.5 Score=48.69 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=31.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 180 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~ 180 (832)
..|.+|..+.|+|||+.|-|++..+ ..+++.|.+..++..|.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~sk~v 223 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAELVQKYI 223 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGGSCSST
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHhhcccc
Confidence 4566889999999999998887654 33777777777665553
No 135
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.57 E-value=1.1 Score=50.15 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=21.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
.+.+|..+.|+|||..+-++...+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~ 157 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 356889999999999887777666554
No 136
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.42 E-value=1.8 Score=46.49 Aligned_cols=38 Identities=32% Similarity=0.375 Sum_probs=25.0
Q ss_pred CceEEEEeCCcccCCh-hhHHHHHHHccccceEEEeecc
Q 003311 237 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGT 274 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~-~sk~~kal~~l~~~~rllLTGT 274 (832)
.+.+|||||+|.+... ...+.+.+.......+++++++
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 4679999999998532 2334455555556667777765
No 137
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.40 E-value=0.79 Score=49.47 Aligned_cols=44 Identities=25% Similarity=0.223 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHhh---ccCCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 116 RAYQLEGLQWMLSLF---NNNLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 116 r~yQ~egl~wml~~~---~~~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
++.+.+.+.-.+... ..+.+.+|..+.|+|||..+-+++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445555444333222 23445688999999999988777766544
No 138
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.23 E-value=0.7 Score=49.96 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHHhhccCC----CeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 115 LRAYQLEGLQWMLSLFNNNL----NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 115 Lr~yQ~egl~wml~~~~~~~----~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
-.+.+.+.+..+......+. +.+|.-+.|+|||..+-++...+. ...|++.+..
T Consensus 48 G~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~~~~~~ 105 (368)
T 3uk6_A 48 GQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG----PDTPFTAIAG 105 (368)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC----SSCCEEEEEG
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc----ccCCcccccc
Confidence 35566677666666554433 458899999999999888776652 2236655543
No 139
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.17 E-value=0.51 Score=51.38 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=19.6
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l 157 (832)
.+.+|.-+.|+|||..+-+++..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 356889999999999988777655
No 140
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=90.09 E-value=0.75 Score=45.79 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=24.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~ 173 (832)
++..+||+|||...+-.+...... ..+++++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 678999999997766666555443 2578888885
No 141
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.78 E-value=1.5 Score=45.85 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=20.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l 157 (832)
..+.+|..++|+|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4566889999999998887776554
No 142
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.59 E-value=0.44 Score=49.20 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=25.0
Q ss_pred hccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 130 FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 130 ~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
...+.+.+|.-++|+|||..+-++...+. ....|++.|.
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~~~---~~~~~~~~v~ 64 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISLN 64 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHTST---TTTSCEEEEE
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHhcC---ccCCCeEEEe
Confidence 34566778999999999987755543321 1234665553
No 143
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.44 E-value=1 Score=48.32 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=25.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCch
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 176 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll 176 (832)
.+.+|.-+.|+|||..+-+++..+ ...+++.|....++
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~-----~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLV 83 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT-----TSCEEEEEECCSSC
T ss_pred ceEEEECCCCccHHHHHHHHHHHc-----CCCcEEEEEhHHHH
Confidence 445789999999999887777654 12356655555444
No 144
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.91 E-value=4.9 Score=43.25 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=18.4
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 003311 135 NGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~l 157 (832)
+.+|..+.|+|||..+-+++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 56889999999998886666544
No 145
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.90 E-value=0.96 Score=45.76 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=24.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~ 173 (832)
++.-+||.|||...+-.+..+... ..+++|+.|.
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~---g~kvli~kp~ 65 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYA---KQKVVVFKPA 65 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCceEEEEec
Confidence 678899999997777666444333 3467888885
No 146
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.17 E-value=1.2 Score=49.97 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=24.7
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 179 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW 179 (832)
.+.+|.-+.|+|||..+-+++..+ ...+++.|....++..|
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 445789999999999887776543 13356666555554433
No 147
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=87.05 E-value=2.6 Score=44.70 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=26.9
Q ss_pred ccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Q 003311 131 NNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 175 (832)
Q Consensus 131 ~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl 175 (832)
....+.+|.-|+|+|||..|-++.... ....+|++.|-...+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~---~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS---ARSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS---SCSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC---cccCCCeEEEeCCCC
Confidence 446677899999999998875554322 123456666644333
No 148
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.98 E-value=2.5 Score=45.19 Aligned_cols=42 Identities=21% Similarity=0.460 Sum_probs=27.9
Q ss_pred CceEEEEeCCcccCCh-hhHHHHHHHccccceEEEeeccCCCC
Q 003311 237 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTPIQN 278 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~-~sk~~kal~~l~~~~rllLTGTPlqN 278 (832)
++.++|+||+|.+-.. ...+.+.+..+....+++++++-...
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 6789999999996432 23455566666666677777665443
No 149
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.48 E-value=2.5 Score=45.23 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=26.4
Q ss_pred CceEEEEeCCcccCCh-hhHHHHHHHccccceEEEeeccCC
Q 003311 237 QWIYMIVDEGHRLKNH-ECALAKTISGYQIQRRLLLTGTPI 276 (832)
Q Consensus 237 ~w~~vIiDEaHriKN~-~sk~~kal~~l~~~~rllLTGTPl 276 (832)
.+.++||||+|.+... ...+.+.+.......+++++.++.
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 3689999999998532 234555555556666777776543
No 150
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=86.18 E-value=4.2 Score=48.99 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=65.9
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHH----HHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIY----LKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~----L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
.|||-....-.+-.....|.++||.+.....+..+... +...|+++..++|+++..+|...+.....+..+ |++
T Consensus 399 GSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~--IvV 476 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID--VVI 476 (780)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC--EEE
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC--EEE
Confidence 34554433333323334578999999987665554444 444589999999999999999999999887655 444
Q ss_pred EeccccccccCcccCCeEEEeCCC
Q 003311 498 LSTRAGGLGLNLQTADTVIIFDSD 521 (832)
Q Consensus 498 lSt~agg~GLNL~~ad~VI~~D~~ 521 (832)
.+.......+++...+.||+=+.+
T Consensus 477 gT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 477 GTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp ECTTHHHHCCCCSCCCEEEEESCC
T ss_pred ECHHHHhhhhhccCCceEEecccc
Confidence 444444556777888887775444
No 151
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=85.89 E-value=4.7 Score=42.10 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=23.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 135 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
+.+|.-+.|+|||..+-++...+... .++++.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEee
Confidence 45889999999999887776655432 34555553
No 152
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=85.81 E-value=2.1 Score=46.48 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=25.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 175 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl 175 (832)
..+.+|.-+.|+|||..+-+++..+ ..+++.|....+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l 153 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSL 153 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHh
Confidence 3456789999999999887776443 235665554433
No 153
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.47 E-value=2.1 Score=45.13 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=18.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~ 156 (832)
+.+.+|.-+.|+|||..+-+++..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 445678999999999988776654
No 154
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.89 E-value=3.8 Score=46.08 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=29.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 179 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW 179 (832)
..|.+|.-+.|+|||+.|-|++..+ ..+++.|....++..|
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~------~~~fi~vs~s~L~sk~ 283 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRT------DATFIRVIGSELVQKY 283 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCCCS
T ss_pred CCceEeeCCCCCcHHHHHHHHHhcc------CCCeEEEEhHHhhccc
Confidence 4455789999999999988877654 2367777766666544
No 155
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=84.51 E-value=7.2 Score=43.69 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=66.2
Q ss_pred HHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHh-hC-CCceEEEEcC--
Q 003311 122 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFST-WA-PSIAAVVYDG-- 197 (832)
Q Consensus 122 gl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k-~~-p~~~v~~~~g-- 197 (832)
++..++.-+..+.-.+|+...|+|||.-++.++..+.... ..+++++.......++...+.. .+ -....+ ..|
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l-~~g~l 268 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEMSAQQLVMRMLCAEGNINAQNL-RTGKL 268 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSSCHHHHHHHHHHHHHTCCHHHH-HTSCC
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCCHHHHHHHHHHHHcCCCHHHH-hcCCC
Confidence 4666664344455568999999999999888887766532 2478888875444454443321 10 000000 111
Q ss_pred ChhHHHHHHHHHHhhcCCccEEec-----CHHHHHHhHHHH-hhcCceEEEEeCCcccCC
Q 003311 198 RPDERKAMREEFFSERGRFNVLIT-----HYDLIMRDRQYL-KKVQWIYMIVDEGHRLKN 251 (832)
Q Consensus 198 ~~~~r~~~~~~~~~~~~~~dVvIt-----Tye~l~~d~~~L-~~~~w~~vIiDEaHriKN 251 (832)
.......+.... ......++.|. |.+.+......+ ...+.++||||+.+.+..
T Consensus 269 ~~~~~~~~~~a~-~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 269 TPEDWGKLTMAM-GSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp CHHHHHHHHHHH-HHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred CHHHHHHHHHHH-HHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 111111111111 00112234432 444444433333 345789999999999863
No 156
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=84.33 E-value=8.1 Score=43.09 Aligned_cols=125 Identities=11% Similarity=0.013 Sum_probs=66.9
Q ss_pred HHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhh---CCCceEEEEcC-
Q 003311 122 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW---APSIAAVVYDG- 197 (832)
Q Consensus 122 gl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~---~p~~~v~~~~g- 197 (832)
++..++.-+..+.-.+|+..+|+|||.-++.++....... ..|++++..-....++...+... .+.... ..|
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l--~~g~ 264 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLEMPAAQLTLRMMCSEARIDMNRV--RLGQ 264 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSSCHHHHHHHHHHHHTTCCTTTC--CGGG
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHHHcCCCHHHH--hCCC
Confidence 4566653344444568999999999999888887665432 35888888765555555443211 111111 011
Q ss_pred -ChhHHHHHHHHHHhhcCCccEEec-----CHHHHHHhHHHH-hhcCceEEEEeCCcccCC
Q 003311 198 -RPDERKAMREEFFSERGRFNVLIT-----HYDLIMRDRQYL-KKVQWIYMIVDEGHRLKN 251 (832)
Q Consensus 198 -~~~~r~~~~~~~~~~~~~~dVvIt-----Tye~l~~d~~~L-~~~~w~~vIiDEaHriKN 251 (832)
+......+.... .......+.|. |...+......+ ...+.++||||..+.+..
T Consensus 265 l~~~~~~~~~~a~-~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 265 LTDRDFSRLVDVA-SRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp CCHHHHHHHHHHH-HHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred CCHHHHHHHHHHH-HHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 112222211111 00012234442 344444433333 345789999999998864
No 157
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=84.28 E-value=0.98 Score=47.38 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=19.9
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHH
Q 003311 135 NGILADEMGLGKTIQTIALIAYLL 158 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~l~ 158 (832)
+.+|..+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 468899999999998887776654
No 158
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.26 E-value=2.4 Score=48.46 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=19.2
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l 157 (832)
.+.+|..+.|+|||..+-+++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 456889999999999887776554
No 159
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.21 E-value=1.8 Score=45.60 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=23.6
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
.+.+|..++|+|||..+-+++..+ ..+++.|..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~ 69 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSA 69 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeH
Confidence 345678999999999988877665 235555544
No 160
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.20 E-value=2.8 Score=44.89 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhh---ccCCCeEEEcCCCCcHHHHHHHHHHHHHHh
Q 003311 116 RAYQLEGLQWMLSLF---NNNLNGILADEMGLGKTIQTIALIAYLLEN 160 (832)
Q Consensus 116 r~yQ~egl~wml~~~---~~~~~gILaDemGlGKTiqaiali~~l~~~ 160 (832)
|+.+.+.+.-.+... ..+...+|..+.|+|||..+-+++..+...
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455555544333321 123456889999999998887777665443
No 161
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.99 E-value=2.8 Score=43.70 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=18.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~ 156 (832)
..+.+|..+.|+|||..+-++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345578999999999888766543
No 162
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=83.67 E-value=0.6 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=17.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHH
Q 003311 136 GILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l 157 (832)
.++...+|+|||..|+..+..+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4678899999999987765443
No 163
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=83.30 E-value=6.6 Score=43.95 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=23.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
+++-..|.|||.++..++.++...+ . .+++|+
T Consensus 104 livG~~G~GKTTt~~kLA~~l~~~G--~-kVllv~ 135 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQKRG--Y-KVGVVC 135 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTT--C-CEEEEE
T ss_pred EEECcCCCCHHHHHHHHHHHHHHCC--C-eEEEEe
Confidence 5678899999999988888776532 2 444444
No 164
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.00 E-value=2.7 Score=47.03 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=29.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 179 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW 179 (832)
.|.+|..+.|+|||+.|-|++..+ ..+++.|.+..++..|
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~------~~~~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI------GANFIFSPASGIVDKY 255 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGTCCSS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehhhhcccc
Confidence 455789999999999998877654 2367777766665544
No 165
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=82.31 E-value=7.2 Score=42.59 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=57.0
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccccc---ccCccc
Q 003311 438 KSGHRVLLFSQMTRLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL---GLNLQT 511 (832)
Q Consensus 438 ~~g~kvLIFsq~~~~ldiL~~~L~~---~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~---GLNL~~ 511 (832)
..+.++||.+.....+..+.+.+.. .|+++..++|+++..+|...+..+..+..+ |++.+....-. -+++..
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~--Iiv~Tp~~l~~~l~~~~~~~ 139 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH--ILVFSTQFVSKNREKLSQKR 139 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCS--EEEEEHHHHHHCHHHHTTCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCC--EEEECHHHHHHHHHHhcccc
Confidence 4578999999999888888777766 688999999999998888888888765444 55555544321 144455
Q ss_pred CCeEEE
Q 003311 512 ADTVII 517 (832)
Q Consensus 512 ad~VI~ 517 (832)
.+.||+
T Consensus 140 ~~~iVi 145 (414)
T 3oiy_A 140 FDFVFV 145 (414)
T ss_dssp CSEEEE
T ss_pred ccEEEE
Confidence 666655
No 166
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=81.71 E-value=4.5 Score=41.60 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=18.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHHH
Q 003311 135 NGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~ 156 (832)
+.+|.-++|+|||..|-++...
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999988777654
No 167
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=81.60 E-value=15 Score=36.40 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC-CCchHHHHHHHHhhCCCceEEEEcC----ChhHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP-KAVLPNWINEFSTWAPSIAAVVYDG----RPDERKAMRE 207 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P-~sll~qW~~E~~k~~p~~~v~~~~g----~~~~r~~~~~ 207 (832)
....++.-..|-|||-.|+++.......+ .+++|+-= +.....=...+-.-++ +.+..+.- ....+.....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G---~rV~~vQF~Kg~~~~gE~~~l~~L~-v~~~~~g~gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG---KNVGVVQFIKGTWPNGERNLLEPHG-VEFQVMATGFTWETQNREADTA 103 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT---CCEEEEESSCCSSCCHHHHHHGGGT-CEEEECCTTCCCCGGGHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEeeCCCCCccHHHHHHhCC-cEEEEcccccccCCCCcHHHHH
Confidence 44567889999999999999987776653 36777732 1111110111111112 22221110 1111110000
Q ss_pred HHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCccc----CChhhHHHHHHHccccceEEEeeccCCCCCHHHH
Q 003311 208 EFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRL----KNHECALAKTISGYQIQRRLLLTGTPIQNSLQEL 283 (832)
Q Consensus 208 ~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHri----KN~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL 283 (832)
.. -..+..-...+..-.+++||+||.-.. -=....+...+..-....-++|||- +-+.+|
T Consensus 104 ~a-------------~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr---~ap~~l 167 (196)
T 1g5t_A 104 AC-------------MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR---GCHRDI 167 (196)
T ss_dssp HH-------------HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS---SCCHHH
T ss_pred HH-------------HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC---CCcHHH
Confidence 00 112222334455568999999998432 1123345666665566678999994 556777
Q ss_pred HHHHhcc
Q 003311 284 WSLLNFL 290 (832)
Q Consensus 284 ~sLl~fL 290 (832)
..+.+++
T Consensus 168 ~e~AD~V 174 (196)
T 1g5t_A 168 LDLADTV 174 (196)
T ss_dssp HHHCSEE
T ss_pred HHhCcce
Confidence 7776665
No 168
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.39 E-value=2.7 Score=46.89 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=30.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 179 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW 179 (832)
..+.+|.-+.|+|||+.|-|++..+ ..+++.|....++..|
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~------~~~fi~v~~s~l~sk~ 256 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT------SATFLRIVGSELIQKY 256 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH------TCEEEEEESGGGCCSS
T ss_pred CCCCceECCCCchHHHHHHHHHHHh------CCCEEEEEHHHhhhcc
Confidence 3455789999999999998887654 2367777776666554
No 169
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=81.22 E-value=7.1 Score=44.19 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=23.6
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~ 173 (832)
.+.+|.-++|+|||..+-++...+ ..|++.|...
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~~ 83 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA------NVPFFHISGS 83 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCHH
Confidence 456789999999999887666533 2366655443
No 170
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=80.60 E-value=5.3 Score=45.30 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=55.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCCCceEEEEcCC----------hh---
Q 003311 135 NGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGR----------PD--- 200 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~v~~~~g~----------~~--- 200 (832)
.-.|..-+|+|||+.+.+++.. ..+|+|||||. ....+|..++..|+|.. |..|... ..
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~ 88 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDII 88 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHH
Confidence 3467788999999887665532 24699999997 56788999999998865 5554432 11
Q ss_pred -HHHHHHHHHHhhcCCccEEecCHHHHHH
Q 003311 201 -ERKAMREEFFSERGRFNVLITHYDLIMR 228 (832)
Q Consensus 201 -~r~~~~~~~~~~~~~~dVvItTye~l~~ 228 (832)
.|-.....+.. ....|||+|...+..
T Consensus 89 ~~Rl~~l~~L~~--~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 89 SSRLSTLYQLPT--MQRGVLIVPVNTLMQ 115 (483)
T ss_dssp HHHHHHHHHGGG--CCSSEEEEEHHHHHB
T ss_pred HHHHHHHHHHHh--CCCCEEEEEHHHHhh
Confidence 12111222222 445699999888764
No 171
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=80.30 E-value=7.1 Score=37.84 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=60.2
Q ss_pred EcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC--CCchHHHHHHHHhhCCCceEEEEcCChhHHHHHHHHHHhhcCCc
Q 003311 139 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP--KAVLPNWINEFSTWAPSIAAVVYDGRPDERKAMREEFFSERGRF 216 (832)
Q Consensus 139 aDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P--~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~ 216 (832)
.---|.|||..++.++..+...+ .++|+|-- ...+..|... .+ ..+
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g---~~vlliD~D~~~~~~~~~~~----~~-------------------------~~~ 55 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSG---YNIAVVDTDPQMSLTNWSKA----GK-------------------------AAF 55 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHTT----SC-------------------------CSS
T ss_pred eCCCCccHHHHHHHHHHHHHHCC---CeEEEEECCCCCCHHHHHhc----CC-------------------------CCC
Confidence 34568999999999988887642 35666643 3444445320 00 224
Q ss_pred cEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHccccceEEEeeccCCCCCHHHHHHHHhcc
Q 003311 217 NVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGYQIQRRLLLTGTPIQNSLQELWSLLNFL 290 (832)
Q Consensus 217 dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l~~~~rllLTGTPlqN~l~EL~sLl~fL 290 (832)
+++-...+.+......+.. .+++||||=.-.+ + .....++.. +.. +++-.+|-... ..+..++..+
T Consensus 56 ~~~~~~~~~l~~~l~~l~~-~yD~viiD~~~~~-~--~~~~~~l~~--ad~-viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 56 DVFTAASEKDVYGIRKDLA-DYDFAIVDGAGSL-S--VITSAAVMV--SDL-VIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp EEEECCSHHHHHTHHHHTT-TSSEEEEECCSSS-S--HHHHHHHHH--CSE-EEEEECSCTTT-HHHHHHHHHH
T ss_pred cEEecCcHHHHHHHHHhcC-CCCEEEEECCCCC-C--HHHHHHHHH--CCE-EEEEecCCHHH-HHHHHHHHHH
Confidence 4444444555544454544 5899999965544 2 122222221 333 44444454455 5555555554
No 172
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=80.04 E-value=8.2 Score=43.08 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=23.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~ 173 (832)
+++-..|.|||.++..++.++...+ ..+.||-++.
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~ 135 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAADV 135 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecCc
Confidence 5678899999999888887776532 2344444443
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=79.84 E-value=8.9 Score=42.97 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=17.4
Q ss_pred CeEEEcCCCCcHHHHHHHHHHH
Q 003311 135 NGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~ 156 (832)
+.||.-+.|+|||..+-++...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4688999999999887665543
No 174
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=79.32 E-value=9.2 Score=44.16 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=30.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCCEEEEeCCC
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKA 174 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~-~~~p~LIV~P~s 174 (832)
..+.+++-.+|+|||...-++|..++.... ..-.+++|=|+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 357899999999999998888888775432 222456666665
No 175
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=78.66 E-value=2.4 Score=48.17 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=22.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
..+.+|.-+.|+|||..+-++...+ ..|++.|.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~------~~~fv~vn 270 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET------GAFFFLIN 270 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEEE
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEEE
Confidence 3456889999999999887665432 34555554
No 176
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.64 E-value=13 Score=44.41 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 455689999999999988777766543
No 177
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=78.10 E-value=7.2 Score=36.52 Aligned_cols=27 Identities=26% Similarity=0.121 Sum_probs=20.5
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHH
Q 003311 132 NNLNGILADEMGLGKTIQTIALIAYLL 158 (832)
Q Consensus 132 ~~~~gILaDemGlGKTiqaiali~~l~ 158 (832)
.+...+|.-+.|+|||..+-+++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355567899999999988877766554
No 178
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=77.74 E-value=24 Score=37.31 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=40.3
Q ss_pred HHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHH
Q 003311 122 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFS 184 (832)
Q Consensus 122 gl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~ 184 (832)
++..++.-+..+.-.+|+...|+|||.-++.++....... .++|++..-....+....+.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESSSCHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECCCCHHHHHHHHH
Confidence 4555553344454568999999999998888776665432 58899887655555444443
No 179
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=77.64 E-value=6.1 Score=42.86 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHH-Hhhc-----cCCCeEE--EcCCCCcHHHHHHHHHHHHHH
Q 003311 116 RAYQLEGLQWML-SLFN-----NNLNGIL--ADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 116 r~yQ~egl~wml-~~~~-----~~~~gIL--aDemGlGKTiqaiali~~l~~ 159 (832)
|+.+.+.+.-++ .... .+...+| ..+.|+|||..+-.++..+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 455555555444 3221 2234567 799999999888777665543
No 180
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=77.54 E-value=15 Score=39.53 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=66.0
Q ss_pred HHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCCCceEE-EEcC--C
Q 003311 122 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAPSIAAV-VYDG--R 198 (832)
Q Consensus 122 gl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~-~~~g--~ 198 (832)
.+..++.-+..+.=.||+..+|+|||.-++.++..+... ..+++++..-....+....+......+..- +..| +
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls 111 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLD 111 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCC
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCC
Confidence 455555434444446899999999999998888776652 468899888655555444332111000000 0011 1
Q ss_pred hhHHHHHHHHHHhhcCCccEEec-----CHHHHHHhHHHHh-hc-CceEEEEeCCcccCCh
Q 003311 199 PDERKAMREEFFSERGRFNVLIT-----HYDLIMRDRQYLK-KV-QWIYMIVDEGHRLKNH 252 (832)
Q Consensus 199 ~~~r~~~~~~~~~~~~~~dVvIt-----Tye~l~~d~~~L~-~~-~w~~vIiDEaHriKN~ 252 (832)
..+...+.... .......+.|. |...+......+. .. ...+||||-.+.+...
T Consensus 112 ~~e~~~l~~a~-~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~ 171 (338)
T 4a1f_A 112 DDQWENLAKCF-DHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGS 171 (338)
T ss_dssp HHHHHHHHHHH-HHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTH
T ss_pred HHHHHHHHHHH-HHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCC
Confidence 11111111110 00011223331 3444444444443 33 6899999999988653
No 181
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=77.21 E-value=3 Score=48.70 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=23.6
Q ss_pred HHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHH
Q 003311 121 EGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 121 egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~ 156 (832)
+.+.+.+ ..+...+|.-+.|+|||..+-++...
T Consensus 51 ~~l~~~i---~~g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 51 EVIKTAA---NQKRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHHHHH---HTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred hhccccc---cCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4444444 45677899999999999887666543
No 182
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=76.90 E-value=16 Score=38.29 Aligned_cols=37 Identities=22% Similarity=0.098 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHH
Q 003311 115 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI 154 (832)
Q Consensus 115 Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali 154 (832)
-|+.+.+.+.-++. .+...+|..+.|.|||..+-.++
T Consensus 16 gR~~el~~L~~~l~---~~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 16 DREEESRKLEESLE---NYPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp SCHHHHHHHHHHHH---HCSEEEEECCTTSSHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh---cCCeEEEECCCcCCHHHHHHHHH
Confidence 35666666554443 24556889999999997655544
No 183
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=76.70 E-value=15 Score=36.62 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=35.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhh
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTW 186 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 186 (832)
.-.+++.++|+|||.-++.++....... ..+++++.-.....+....+...
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLRREMASF 81 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHHTT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeecccCCHHHHHHHHHHc
Confidence 3358999999999999888776544332 34788888765566655555544
No 184
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=76.15 E-value=30 Score=34.55 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhc
Q 003311 360 DMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKS 439 (832)
Q Consensus 360 ~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~ 439 (832)
.+++.|.+.+..+.......+....|.++.+..++.-+..+...+... ...
T Consensus 51 ~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~-----------------------------~~~ 101 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE-----------------------------RGD 101 (242)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCC-----------------------------TTC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccc-----------------------------cCC
Confidence 578999999988876544444444444444433332222222211110 124
Q ss_pred CCeEEEEecchhHHHHHH----HHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc-----cccCcc
Q 003311 440 GHRVLLFSQMTRLMDILE----IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG-----LGLNLQ 510 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~----~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg-----~GLNL~ 510 (832)
+.++||.+.....+..+. .++...++.+..+.|+.+.......+.. ..+ |++.+....- ..+++.
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~--I~v~Tp~~l~~~l~~~~~~~~ 175 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVE--ICIATPGRLIDFLECGKTNLR 175 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCS--EEEECHHHHHHHHHHTSCCCT
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCC--EEEECHHHHHHHHHcCCCCcc
Confidence 668999999886655544 4445668999999999997766555543 122 4444432221 234566
Q ss_pred cCCeEEE
Q 003311 511 TADTVII 517 (832)
Q Consensus 511 ~ad~VI~ 517 (832)
..+.||+
T Consensus 176 ~~~~lVi 182 (242)
T 3fe2_A 176 RTTYLVL 182 (242)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 6766665
No 185
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=76.11 E-value=9 Score=37.46 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=33.6
Q ss_pred HHHHHHH-hhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCC--chHHHHHHH
Q 003311 122 GLQWMLS-LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA--VLPNWINEF 183 (832)
Q Consensus 122 gl~wml~-~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~s--ll~qW~~E~ 183 (832)
++..++. -+..+.-.+|+-+.|+|||..+..++. .. .++++++.-.. ....|..-.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~---~~~v~~i~~~~~~~~~~~~~~~ 66 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LS---GKKVAYVDTEGGFSPERLVQMA 66 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HH---CSEEEEEESSCCCCHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---Hc---CCcEEEEECCCCCCHHHHHHHH
Confidence 4555543 233344458899999999988877766 21 34667766543 344454433
No 186
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=75.51 E-value=12 Score=40.56 Aligned_cols=55 Identities=15% Similarity=0.040 Sum_probs=36.7
Q ss_pred HHHHHHH--hhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHH
Q 003311 122 GLQWMLS--LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 179 (832)
Q Consensus 122 gl~wml~--~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW 179 (832)
++..++. -+..+.-.+|+-+.|+|||..++.++...... .++++++.-.....++
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH
Confidence 3555553 23334446789999999999998888776553 3577888765555544
No 187
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=75.11 E-value=11 Score=43.43 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=55.8
Q ss_pred HHHHHHHhh-hhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCC-CCHHHHHHHHHhhcCCCCCceEEEEec--ccc
Q 003311 428 LLDRLLPKL-RKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGS-TKTEERGTLLKQFNAPDSPYFMFLLST--RAG 503 (832)
Q Consensus 428 ~L~~lL~~l-~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~-ts~~eR~~~i~~Fn~~~~~~~v~LlSt--~ag 503 (832)
.+.+.+..+ ...+..+|||+.+-..++.+.. ..+.++. ..|. ++ +.++++.|+..... +|+++ ...
T Consensus 380 ~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~v~-~q~~~~~---~~~~~~~~~~~~~~---vl~~v~gg~~ 449 (551)
T 3crv_A 380 RYADYLLKIYFQAKANVLVVFPSYEIMDRVMS---RISLPKY-VESEDSS---VEDLYSAISANNKV---LIGSVGKGKL 449 (551)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESCHHHHHHHHT---TCCSSEE-ECCSSCC---HHHHHHHTTSSSSC---EEEEESSCCS
T ss_pred HHHHHHHHHHHhCCCCEEEEecCHHHHHHHHH---hcCCcEE-EcCCCCC---HHHHHHHHHhcCCe---EEEEEeccee
Confidence 344444443 3456689999888888877775 2344443 3443 34 46678888643332 56665 689
Q ss_pred ccccCcc-----cCCeEEEeCCCC
Q 003311 504 GLGLNLQ-----TADTVIIFDSDW 522 (832)
Q Consensus 504 g~GLNL~-----~ad~VI~~D~~w 522 (832)
.+|||++ .+..||+.-.|+
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCC
T ss_pred cccccccccCCcceeEEEEEcCCC
Confidence 9999999 388999988776
No 188
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=74.73 E-value=4.5 Score=39.39 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=24.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEE
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 170 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV 170 (832)
.+.+|.-+.|+|||..+-+++..+... ..+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~---~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR---NVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEE
Confidence 566889999999999988777666543 2355544
No 189
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=74.16 E-value=15 Score=44.55 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=21.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 345689999999999988777776644
No 190
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=73.21 E-value=38 Score=33.01 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=47.0
Q ss_pred CCeEEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc-----ccccCc
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKLN-----DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-----GLGLNL 509 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~~-----g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-----g~GLNL 509 (832)
+.++||.+.....+..+.+.+... ++.+..+.|+.+...+...+.. +..+ |++.+.... ...+++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~---~~~~--i~v~T~~~l~~~~~~~~~~~ 156 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NCPH--IVVGTPGRILALARNKSLNL 156 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---SCCS--EEEECHHHHHHHHHTTSSCC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc---CCCC--EEEeCHHHHHHHHHhCCCCc
Confidence 348999999988877766665432 7899999999987666555543 2223 444443322 223566
Q ss_pred ccCCeEEEe
Q 003311 510 QTADTVIIF 518 (832)
Q Consensus 510 ~~ad~VI~~ 518 (832)
...+.||+=
T Consensus 157 ~~~~~lViD 165 (220)
T 1t6n_A 157 KHIKHFILD 165 (220)
T ss_dssp TTCCEEEEE
T ss_pred ccCCEEEEc
Confidence 667776663
No 191
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=73.08 E-value=15 Score=41.00 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=40.5
Q ss_pred HHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHH
Q 003311 122 GLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE 182 (832)
Q Consensus 122 gl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E 182 (832)
++..++.-+..+.-.||+..+|+|||.-++.++...... ..++|++..-....++...
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms~~ql~~R 243 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKKENIKR 243 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSCTTHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHH
Confidence 466666434444456899999999999999888777654 3588888875544444443
No 192
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=72.74 E-value=31 Score=34.81 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=44.8
Q ss_pred CCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc------ccccCc
Q 003311 440 GHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG------GLGLNL 509 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag------g~GLNL 509 (832)
+.++||.+.....+..+.+.+. ..++.+..+.|+.+.......+. . ..+ |++.+.... ..++++
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~--I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA---K-KPH--IIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH---T-CCS--EEEECHHHHHHHHHHSTTCCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc---C-CCC--EEEECHHHHHHHHHcCCCcCc
Confidence 4579999998877666555543 34889999999988765544332 1 222 444443222 234667
Q ss_pred ccCCeEEE
Q 003311 510 QTADTVII 517 (832)
Q Consensus 510 ~~ad~VI~ 517 (832)
...+.||+
T Consensus 185 ~~~~~lVi 192 (249)
T 3ber_A 185 RALKYLVM 192 (249)
T ss_dssp TTCCEEEE
T ss_pred cccCEEEE
Confidence 77777666
No 193
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=71.59 E-value=5.3 Score=47.69 Aligned_cols=56 Identities=21% Similarity=0.152 Sum_probs=43.1
Q ss_pred CchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCc
Q 003311 114 ELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG-VTGPHVIVAPKAV 175 (832)
Q Consensus 114 ~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~-~~~p~LIV~P~sl 175 (832)
.|.|.|.++|.. .....++....|+|||.+.+.-+++++...+ ....+|+|+.+.-
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnk 67 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNK 67 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHH
Confidence 688999999863 2345677788999999999999999987543 3456899988643
No 194
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=69.84 E-value=18 Score=45.26 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=58.4
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccccc---ccCccc
Q 003311 438 KSGHRVLLFSQMTRLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL---GLNLQT 511 (832)
Q Consensus 438 ~~g~kvLIFsq~~~~ldiL~~~L~~---~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~---GLNL~~ 511 (832)
..|.++||.+.....+..+.+.|.. .++.+..++|+++..+|...+..+..++.+ |++.++...-. -+++..
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~--IlV~Tp~rL~~~l~~l~~~~ 196 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH--ILVFSTQFVSKNREKLSQKR 196 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCS--EEEEEHHHHHHSHHHHHTSC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCC--EEEECHHHHHHHHHhhcccC
Confidence 5678999999999998888888876 578999999999988888888888876555 45555433311 144556
Q ss_pred CCeEEEe
Q 003311 512 ADTVIIF 518 (832)
Q Consensus 512 ad~VI~~ 518 (832)
.+.||+=
T Consensus 197 l~~lViD 203 (1104)
T 4ddu_A 197 FDFVFVD 203 (1104)
T ss_dssp CSEEEES
T ss_pred cCEEEEe
Confidence 6666663
No 195
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=69.69 E-value=8.4 Score=46.12 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=23.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEE
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 170 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV 170 (832)
.+|..++|+|||..|-++...+... ..|++.|
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l~~~---~~~~i~i 555 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESIFGD---EESMIRI 555 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHSC---TTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC---CcceEEE
Confidence 6889999999999998777666322 3455544
No 196
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=69.54 E-value=15 Score=35.90 Aligned_cols=47 Identities=28% Similarity=0.314 Sum_probs=30.4
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHH
Q 003311 132 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 181 (832)
Q Consensus 132 ~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~ 181 (832)
.+.-.+|+.+.|+|||..+..++..+... .++++++.......+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~~~~~~~~ 68 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEESRDSIIR 68 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcccCHHHHHH
Confidence 34445788999999998887777655543 346777765444443333
No 197
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=68.86 E-value=29 Score=36.39 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=21.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
++.-..|.|||..+..++..+....+ ..++++.
T Consensus 109 ~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~ 141 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFIT 141 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence 45677999999888777766654322 2455544
No 198
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=67.61 E-value=19 Score=39.15 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=39.0
Q ss_pred HHHHHHH--hhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHH
Q 003311 122 GLQWMLS--LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 180 (832)
Q Consensus 122 gl~wml~--~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~ 180 (832)
++..++. -+..+.-.+|+-+.|+|||..++.++...... .+++++|.......+|.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPVY 118 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHHH
Confidence 4555553 23334446889999999999999888776553 35788888766666663
No 199
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=66.56 E-value=33 Score=33.67 Aligned_cols=124 Identities=12% Similarity=0.116 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhc
Q 003311 360 DMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKS 439 (832)
Q Consensus 360 ~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~ 439 (832)
.+++.|.+.+..+.......+....|.++.+..++.-+..+... ........
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~----------------------------~~~~~~~~ 93 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQ----------------------------PISREQRN 93 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------------------------------------C
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhc----------------------------cchhhccC
Confidence 57899999998887654444444444444433332222211100 00011135
Q ss_pred CCeEEEEecchhHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc-----ccccCccc
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKL---NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-----GLGLNLQT 511 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~---~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-----g~GLNL~~ 511 (832)
+.++||.+.....+..+.+.+.. .++.+..+.|+.+...+...+. . ..+ |++.+.... ...+++..
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~--iiv~Tp~~l~~~~~~~~~~~~~ 167 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDIS---K-GVD--IIIATPGRLNDLQMNNSVNLRS 167 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHH---S-CCS--EEEECHHHHHHHHHTTCCCCTT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhc---C-CCC--EEEECHHHHHHHHHcCCcCccc
Confidence 77899999999888877777754 4788999999877654443332 2 222 444443222 12445666
Q ss_pred CCeEEE
Q 003311 512 ADTVII 517 (832)
Q Consensus 512 ad~VI~ 517 (832)
.+.||+
T Consensus 168 ~~~lVi 173 (228)
T 3iuy_A 168 ITYLVI 173 (228)
T ss_dssp CCEEEE
T ss_pred ceEEEE
Confidence 666665
No 200
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=65.59 E-value=45 Score=32.87 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=29.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHH
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGSTKTEERGT 481 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~----~g~~~~rldG~ts~~eR~~ 481 (832)
.+.++||.+.....+..+.+.+.. .++.+..+.|+.+......
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 142 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 142 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHH
Confidence 467899999998777666666543 4588999999877554433
No 201
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=65.44 E-value=66 Score=33.42 Aligned_cols=36 Identities=17% Similarity=0.083 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHH
Q 003311 116 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 116 r~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~ 156 (832)
|+.+.+.+. . +.. ...+|..+.|.|||..+-.++..
T Consensus 18 R~~el~~L~---~-l~~-~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 18 REKEIEKLK---G-LRA-PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp CHHHHHHHH---H-TCS-SEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHH---H-hcC-CcEEEECCCCCCHHHHHHHHHHh
Confidence 555655554 3 333 45678999999999776655543
No 202
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=65.09 E-value=25 Score=37.18 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=21.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
.+.-..|.|||..+..++..+... .+.++++.
T Consensus 108 ~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~ 139 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAA 139 (306)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEc
Confidence 456789999998887777666543 34555554
No 203
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=65.01 E-value=47 Score=35.27 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=48.2
Q ss_pred CCeEEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc-----ccccCc
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKLN-----DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-----GLGLNL 509 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~~-----g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-----g~GLNL 509 (832)
+.++||.+.....+..+.+.+... ++.+..+.|+.+.......+.. +..+ |++.+.... ...+++
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~--iiv~T~~~l~~~~~~~~~~~ 150 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NCPH--IVVGTPGRILALARNKSLNL 150 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH---SCCS--EEEECHHHHHHHHHTTSSCC
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc---CCCC--EEEECHHHHHHHHHcCCccc
Confidence 568999999988877766665432 7899999999987766655543 2223 455554333 223556
Q ss_pred ccCCeEEE
Q 003311 510 QTADTVII 517 (832)
Q Consensus 510 ~~ad~VI~ 517 (832)
...+.||+
T Consensus 151 ~~~~~vVi 158 (391)
T 1xti_A 151 KHIKHFIL 158 (391)
T ss_dssp TTCSEEEE
T ss_pred cccCEEEE
Confidence 67777766
No 204
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=64.79 E-value=50 Score=32.58 Aligned_cols=72 Identities=13% Similarity=0.067 Sum_probs=45.3
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh-----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc-----ccccC
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKL-----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-----GLGLN 508 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~-----~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-----g~GLN 508 (832)
.+.++||.+.....+..+.+.+.. .++++..+.|+.+..++...+ + . ..|++.+.... ...++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~--~~Iiv~Tp~~l~~~~~~~~~~ 163 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K--K--CHIAVGSPGRIKQLIELDYLN 163 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T--S--CSEEEECHHHHHHHHHTTSSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c--C--CCEEEECHHHHHHHHhcCCcc
Confidence 356899999998887777666643 278899999999876654433 2 2 22444444322 12345
Q ss_pred cccCCeEEE
Q 003311 509 LQTADTVII 517 (832)
Q Consensus 509 L~~ad~VI~ 517 (832)
+...+.||+
T Consensus 164 ~~~~~~lVi 172 (230)
T 2oxc_A 164 PGSIRLFIL 172 (230)
T ss_dssp GGGCCEEEE
T ss_pred cccCCEEEe
Confidence 556665555
No 205
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=63.16 E-value=1e+02 Score=31.09 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=45.5
Q ss_pred cCCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec-c-----c-ccccc
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST-R-----A-GGLGL 507 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt-~-----a-gg~GL 507 (832)
.+.++||.+.....+..+...+. ..+..+..+.|+.........+. .+ .+ | +++| . . .+.++
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~-~~--I-iv~Tp~~l~~~~~~~~~~ 197 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG---NG-IN--I-IVATPGRLLDHMQNTPGF 197 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHH---HC-CS--E-EEECHHHHHHHHHHCTTC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhc---CC-CC--E-EEEcHHHHHHHHHccCCc
Confidence 47789999999877666555554 45788899999988665544433 21 22 4 5554 1 1 12346
Q ss_pred CcccCCeEEE
Q 003311 508 NLQTADTVII 517 (832)
Q Consensus 508 NL~~ad~VI~ 517 (832)
++...+.||+
T Consensus 198 ~~~~l~~lVi 207 (262)
T 3ly5_A 198 MYKNLQCLVI 207 (262)
T ss_dssp CCTTCCEEEE
T ss_pred ccccCCEEEE
Confidence 6777776665
No 206
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=62.20 E-value=36 Score=36.09 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=22.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
.+....|.|||.++..++..+... .+.++++.
T Consensus 109 ~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid 140 (320)
T 1zu4_A 109 MLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAA 140 (320)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 355679999999887777666543 34566654
No 207
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=61.64 E-value=10 Score=40.13 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLL 158 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~ 158 (832)
+.+.+|..++|+|||..+.++...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45668899999999999988888776
No 208
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.06 E-value=3.9 Score=45.72 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=30.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 179 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW 179 (832)
..|.+|..+.|+|||+.|-|++..+ ..|++.|....++..|
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~~~~ 255 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAPQLVQMY 255 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCSSC
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehhhhhhcc
Confidence 3455789999999999988877654 2377877777666554
No 209
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=60.82 E-value=23 Score=44.50 Aligned_cols=93 Identities=11% Similarity=0.057 Sum_probs=64.7
Q ss_pred cchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 003311 423 SGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 498 (832)
Q Consensus 423 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~Ll 498 (832)
+||-......+-.....|.++||.+..+..+..+...+. ..++.+..++|..+..++...++....+..+ |++.
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~d--IvV~ 712 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID--ILIG 712 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS--EEEE
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC--EEEE
Confidence 555544333333333467899999999877766555554 3468899999999999999999998876655 5555
Q ss_pred eccccccccCcccCCeEEE
Q 003311 499 STRAGGLGLNLQTADTVII 517 (832)
Q Consensus 499 St~agg~GLNL~~ad~VI~ 517 (832)
+.......+++...+.||+
T Consensus 713 T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 713 THKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CTHHHHSCCCCSSEEEEEE
T ss_pred CHHHHhCCccccccceEEE
Confidence 5555666677777766665
No 210
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=59.55 E-value=9.6 Score=48.04 Aligned_cols=52 Identities=21% Similarity=0.180 Sum_probs=40.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhCC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWAP 188 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p 188 (832)
++-...|+|||.+.+.-|++++.......++|+|||.....+-...+....+
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 3444589999999999999998876555789999998876666666665544
No 211
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=58.04 E-value=43 Score=36.33 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=49.6
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHh-CCC---eEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccccc-----ccC
Q 003311 438 KSGHRVLLFSQMTRLMDILEIYLKL-NDF---KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL-----GLN 508 (832)
Q Consensus 438 ~~g~kvLIFsq~~~~ldiL~~~L~~-~g~---~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~-----GLN 508 (832)
..+.++||.+.....+..+...+.. .+. .+..++|+....++...... ..|++++...... .++
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-------~~ivv~T~~~l~~~~~~~~~~ 122 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-------AKVIVATPQTIENDLLAGRIS 122 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-------CSEEEECHHHHHHHHHTTSCC
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC-------CCEEEecHHHHHHHHhcCCcc
Confidence 3578999999998877766666643 355 89999999998876655432 2255666544332 345
Q ss_pred cccCCeEEEe
Q 003311 509 LQTADTVIIF 518 (832)
Q Consensus 509 L~~ad~VI~~ 518 (832)
+...+.||+=
T Consensus 123 ~~~~~~vIiD 132 (494)
T 1wp9_A 123 LEDVSLIVFD 132 (494)
T ss_dssp TTSCSEEEEE
T ss_pred hhhceEEEEE
Confidence 6667777763
No 212
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=57.78 E-value=94 Score=32.32 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=22.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
.+.-..|.|||..+..++..+... .+.++++.-
T Consensus 102 ~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~ 134 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (295)
T ss_dssp EEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecC
Confidence 345789999998887777666543 346666553
No 213
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=56.92 E-value=29 Score=40.81 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=36.2
Q ss_pred CCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCC
Q 003311 113 GELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 174 (832)
Q Consensus 113 ~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~s 174 (832)
+.+..-|.++|..++.... ...+|-..-|-|||..+-.+++.+. +..+|.+|..
T Consensus 174 ~~~T~dQ~~al~~~~~~~~--~~~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~~ 227 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPP--GVAAVTAARGRGKSALAGQLISRIA------GRAIVTAPAK 227 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCS--EEEEEEECTTSSHHHHHHHHHHHSS------SCEEEECSSC
T ss_pred CCCCHHHHHHHHHHHHhhh--CeEEEecCCCCCHHHHHHHHHHHHH------hCcEEECCCH
Confidence 5778899999987776432 1236677799999955544444432 2468889953
No 214
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=56.88 E-value=31 Score=39.97 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=49.0
Q ss_pred CCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecc
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTR 501 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ 501 (832)
+.++||.+.....+.-..+.|...|+.+..++|+++..++..++..+........+++++..
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 35899999999988888888887899999999999999988888887433333446666664
No 215
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=56.64 E-value=27 Score=35.05 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=23.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
|..---|.|||..++.+...+...+ .++|+|-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g---~~VlliD 38 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKG---KKTVVID 38 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC---CcEEEEE
Confidence 4456679999999999998887642 3566654
No 216
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=56.42 E-value=14 Score=46.99 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=44.0
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC---CCCCEEEEeCCCch
Q 003311 112 GGELRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKG---VTGPHVIVAPKAVL 176 (832)
Q Consensus 112 ~~~Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~---~~~p~LIV~P~sll 176 (832)
+..|.+-|.++|.. .+.+.++....|+|||.+.+.=+.+++.... ....+|||+++...
T Consensus 8 ~~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp --CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHH
T ss_pred CCCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHH
Confidence 46899999999851 2556788899999999998887888877643 34578999997443
No 217
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=55.76 E-value=47 Score=32.35 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=25.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHH
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEER 479 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR 479 (832)
.+.++||.+.....+..+.+.+. ..++.+..++|+.+..+.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 125 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHH
Confidence 35689999999877766665554 347889999998775443
No 218
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=55.76 E-value=33 Score=35.16 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=31.9
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHHhcC--------CCCCEEEEeCCCchHHHHHHH
Q 003311 132 NNLNGILADEMGLGKTIQTIALIAYLLENKG--------VTGPHVIVAPKAVLPNWINEF 183 (832)
Q Consensus 132 ~~~~gILaDemGlGKTiqaiali~~l~~~~~--------~~~p~LIV~P~sll~qW~~E~ 183 (832)
.+.-.+|+-+.|+|||..+..++..+. .+. ..++++++.......+....+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~ 87 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPPTAIHHRL 87 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCHHHHHHHH
Confidence 345568899999999998887776443 210 135677776655444443333
No 219
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.99 E-value=5.5 Score=44.41 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=29.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 179 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW 179 (832)
..|.+|..+.|+|||..|-|++..+ ..+++.|....++..|
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEFVHKY 246 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGTCCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchhhccc
Confidence 3445789999999999998877654 2367777666655444
No 220
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=54.17 E-value=57 Score=34.36 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=33.7
Q ss_pred HHHHHHH-hhccCCCeEEEcCCCCcHHHHHHHHHHHHHHh---cCCCCCEEEEeCCCc
Q 003311 122 GLQWMLS-LFNNNLNGILADEMGLGKTIQTIALIAYLLEN---KGVTGPHVIVAPKAV 175 (832)
Q Consensus 122 gl~wml~-~~~~~~~gILaDemGlGKTiqaiali~~l~~~---~~~~~p~LIV~P~sl 175 (832)
++..++. -+..+.-.+|+.+.|+|||..++.++...... .+..+++++|.-...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4555552 23334446889999999999888877653221 112457777776543
No 221
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=53.63 E-value=1.2e+02 Score=28.77 Aligned_cols=73 Identities=5% Similarity=0.039 Sum_probs=43.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh----C-CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc-----ccccC
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKL----N-DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-----GLGLN 508 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~----~-g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-----g~GLN 508 (832)
.+.++||.+.....+..+.+.+.. . ++.+..+.|+.+..+... .+.. . ..|++.+.... ...++
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~--~~i~v~T~~~l~~~~~~~~~~ 143 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RLDD-T--VHVVIATPGRILDLIKKGVAK 143 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HTTS-C--CSEEEECHHHHHHHHHTTCSC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hcCC-C--CCEEEeCHHHHHHHHHcCCcC
Confidence 356899999998877666665532 2 788999999988654432 2222 2 23444444322 11235
Q ss_pred cccCCeEEE
Q 003311 509 LQTADTVII 517 (832)
Q Consensus 509 L~~ad~VI~ 517 (832)
+...+.||+
T Consensus 144 ~~~~~~lVi 152 (206)
T 1vec_A 144 VDHVQMIVL 152 (206)
T ss_dssp CTTCCEEEE
T ss_pred cccCCEEEE
Confidence 556666665
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=53.36 E-value=21 Score=35.99 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=24.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 175 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl 175 (832)
.+.+|.-++|+|||..+-++...+ ..|++.|....+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~------~~~~~~i~~~~~ 81 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSDF 81 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH------TCCEEEECSCSS
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc------CCCEEEEeHHHH
Confidence 356789999999998876665543 235655544443
No 223
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=52.25 E-value=1.3e+02 Score=28.60 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=44.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc-----ccccCccc
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLN--DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-----GLGLNLQT 511 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-----g~GLNL~~ 511 (832)
.+.++||.+.....+..+.+.+... ++.+..+.|+.+.......+.. ..+ |++.+.... ...+++..
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--i~v~T~~~l~~~~~~~~~~~~~ 144 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GAD--AVVATPGRALDYLRQGVLDLSR 144 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCS--EEEECHHHHHHHHHHTSSCCTT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCC--EEEECHHHHHHHHHcCCcchhh
Confidence 4678999999988877777777543 5788889998876544443321 222 444443221 12345666
Q ss_pred CCeEEE
Q 003311 512 ADTVII 517 (832)
Q Consensus 512 ad~VI~ 517 (832)
.+.||+
T Consensus 145 ~~~iVi 150 (207)
T 2gxq_A 145 VEVAVL 150 (207)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 666665
No 224
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=51.89 E-value=14 Score=41.34 Aligned_cols=39 Identities=26% Similarity=0.222 Sum_probs=27.6
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCch
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 176 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll 176 (832)
.+.+|..++|+|||..|-++...+-. ..+++.|....+.
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~----~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGS----KVPFCPMVGSEVY 102 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCT----TSCEEEEEGGGGC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCC----CceEEEEeHHHHH
Confidence 45688999999999999888776521 2466666654443
No 225
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=51.77 E-value=1e+02 Score=34.11 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=24.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
+++...|.|||.++..++.++....+ .++++|.-
T Consensus 104 ~ivG~~GvGKTT~a~~LA~~l~~~~G--~kVllvd~ 137 (433)
T 2xxa_A 104 LMAGLQGAGKTTSVGKLGKFLREKHK--KKVLVVSA 137 (433)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTSC--CCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence 45678999999999999988876522 24555443
No 226
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=51.57 E-value=55 Score=35.25 Aligned_cols=52 Identities=17% Similarity=0.083 Sum_probs=35.2
Q ss_pred HHHHHHH--hhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCch
Q 003311 122 GLQWMLS--LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVL 176 (832)
Q Consensus 122 gl~wml~--~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll 176 (832)
++..++. -+..+.-.+|+.+.|+|||..++.++..+... .+++++|......
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~ 103 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHAL 103 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCc
Confidence 3555542 23334456889999999999999888776653 2477887774433
No 227
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=51.19 E-value=34 Score=38.25 Aligned_cols=72 Identities=13% Similarity=0.207 Sum_probs=43.4
Q ss_pred CCeEEEEecchhHHHHHH----HHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccc-----c-Cc
Q 003311 440 GHRVLLFSQMTRLMDILE----IYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLG-----L-NL 509 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~----~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~G-----L-NL 509 (832)
+.++||.+.....+..+. .++...++.+..++|+.+...+...+.. . ..|++.+....-.- + .+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~--~~i~v~T~~~l~~~~~~~~~~~~ 125 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----D--NDIIILTPQILVNNLNNGAIPSL 125 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----H--CSEEEECHHHHHHHHHTSSSCCG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----C--CCEEEECHHHHHHHHhcCccccc
Confidence 678999999876655444 4444559999999999875544332221 1 22555554443221 2 45
Q ss_pred ccCCeEEE
Q 003311 510 QTADTVII 517 (832)
Q Consensus 510 ~~ad~VI~ 517 (832)
...+.||+
T Consensus 126 ~~~~~vVi 133 (555)
T 3tbk_A 126 SVFTLMIF 133 (555)
T ss_dssp GGCSEEEE
T ss_pred ccCCEEEE
Confidence 55676666
No 228
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=50.72 E-value=34 Score=35.31 Aligned_cols=49 Identities=6% Similarity=-0.151 Sum_probs=30.8
Q ss_pred HHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 003311 123 LQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPK 173 (832)
Q Consensus 123 l~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~ 173 (832)
+.-+..-+..+.-.+|+.+.|+|||..+..++..+.... ..+++++...
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~e 73 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAMLE 73 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEESS
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeCc
Confidence 333333344455567899999999988877766554432 1267777654
No 229
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=50.26 E-value=1.2e+02 Score=31.93 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=46.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc-----ccccCc
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-----GLGLNL 509 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-----g~GLNL 509 (832)
.+.++||.+.....+..+.+.+. ..++.+..+.|+.+..+....+.. .+ |++.+.... ...+.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~--i~v~T~~~l~~~~~~~~~~~ 160 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-----AQ--IVVGTPGRVFDNIQRRRFRT 160 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHH-----CS--EEEECHHHHHHHHHTTSSCC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCC-----CC--EEEECHHHHHHHHHhCCcch
Confidence 46689999999877766665553 357899999999987666555441 22 445443332 123445
Q ss_pred ccCCeEEEeC
Q 003311 510 QTADTVIIFD 519 (832)
Q Consensus 510 ~~ad~VI~~D 519 (832)
...+.||+=+
T Consensus 161 ~~~~~vIiDE 170 (394)
T 1fuu_A 161 DKIKMFILDE 170 (394)
T ss_dssp TTCCEEEEET
T ss_pred hhCcEEEEEC
Confidence 5666666633
No 230
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=49.96 E-value=1e+02 Score=30.14 Aligned_cols=53 Identities=17% Similarity=0.088 Sum_probs=30.4
Q ss_pred HHHHHHH-hhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhc---CCCCCEEEEeCCC
Q 003311 122 GLQWMLS-LFNNNLNGILADEMGLGKTIQTIALIAYLLENK---GVTGPHVIVAPKA 174 (832)
Q Consensus 122 gl~wml~-~~~~~~~gILaDemGlGKTiqaiali~~l~~~~---~~~~p~LIV~P~s 174 (832)
++.+++. -...+.-.+|+-+.|+|||..+..++....... +..++++.+.-..
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3555552 233344457889999999998877765422211 1234566665543
No 231
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=48.91 E-value=1e+02 Score=34.06 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=23.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
+++...|.|||..+..++.++... .+.++++.-
T Consensus 102 ~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~ 134 (425)
T 2ffh_A 102 FLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (425)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeec
Confidence 456789999999888877776543 345666553
No 232
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=48.43 E-value=98 Score=30.53 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=25.3
Q ss_pred cCCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHH
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTE 477 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~ 477 (832)
.+.++||.+.....+..+.+.+. ..++.+..+.|+.+..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 139 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR 139 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-----
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH
Confidence 45689999999877766666654 3467888888876643
No 233
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=48.35 E-value=26 Score=29.40 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=39.8
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCC--CCceEEEEeccccccccCcccCCeEE
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPD--SPYFMFLLSTRAGGLGLNLQTADTVI 516 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~--~~~~v~LlSt~agg~GLNL~~ad~VI 516 (832)
.|..+..++.....++.+.. ..+..+.++-.++...-..+++..+... ....+++++...... ....+...-
T Consensus 24 ~g~~v~~~~~~~~~~~~l~~----~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~~ 97 (119)
T 2j48_A 24 AGFKVIWLVDGSTALDQLDL----LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQASA 97 (119)
T ss_dssp TTCEEEEESCHHHHHHHHHH----HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCSE
T ss_pred CCcEEEEecCHHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHHH
Confidence 45566555544444444332 2455666665443222223333333211 123344554433222 211111222
Q ss_pred EeCCCCChhhHHHHhhhccc
Q 003311 517 IFDSDWNPQMDQQAEDRAHR 536 (832)
Q Consensus 517 ~~D~~wNp~~~~QAigRahR 536 (832)
++.-|.++....+++.++.+
T Consensus 98 ~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 98 ILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp ECSSCSTTHHHHHHHHTTCC
T ss_pred hccCCCCHHHHHHHHHHHhc
Confidence 34456677777777666543
No 234
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=47.75 E-value=78 Score=33.79 Aligned_cols=42 Identities=10% Similarity=-0.018 Sum_probs=30.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHH
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN 178 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~q 178 (832)
..++-+.|+|||..++-++...... +..++++.|.....+.+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhhH
Confidence 4679999999999998888776653 22357788887654443
No 235
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=47.59 E-value=57 Score=35.10 Aligned_cols=32 Identities=9% Similarity=-0.032 Sum_probs=24.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
|..---|.|||..|+.++..+...+ .++|+|-
T Consensus 148 v~s~KGGvGKTT~a~nLA~~La~~g---~rVlliD 179 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAIAHANMG---KKVFYLN 179 (373)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHHT---CCEEEEE
T ss_pred EECCCCCChHHHHHHHHHHHHHhCC---CCEEEEE
Confidence 4456789999999999988887652 3667664
No 236
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=47.35 E-value=71 Score=35.70 Aligned_cols=73 Identities=11% Similarity=0.128 Sum_probs=41.8
Q ss_pred CCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccccc----c-c-Cc
Q 003311 440 GHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL----G-L-NL 509 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~----G-L-NL 509 (832)
+.++||.+.....+..+...+. ..++.+..++|+.+...+...+.. . ..|++.+....-. | + .+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~--~~i~v~T~~~l~~~~~~~~~~~~ 128 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----D--SDIIVVTPQILVNSFEDGTLTSL 128 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----H--CSEEEECHHHHHHHHHSSSCCCS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----C--CCEEEECHHHHHHHHHhCccccc
Confidence 6789999998876665555544 348999999999876554333321 1 2255555444331 1 3 56
Q ss_pred ccCCeEEEe
Q 003311 510 QTADTVIIF 518 (832)
Q Consensus 510 ~~ad~VI~~ 518 (832)
...+.||+=
T Consensus 129 ~~~~~vViD 137 (556)
T 4a2p_A 129 SIFTLMIFD 137 (556)
T ss_dssp TTCSEEEEE
T ss_pred ccCCEEEEE
Confidence 667777773
No 237
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=47.11 E-value=13 Score=44.77 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=26.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNW 179 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW 179 (832)
.+.+|.-+.|+|||+.|-+++..+ ..+++.|....++..|
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMW 551 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhccc
Confidence 456889999999998887766432 3356655544444433
No 238
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=47.04 E-value=55 Score=37.08 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=50.1
Q ss_pred CCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG 503 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag 503 (832)
+.++||.+.....+.-..+.|...|+.+..++|+.+..++...+..+..+..+ ++++++...
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~--ilv~Tpe~l 126 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIR--LLYIAPERL 126 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCS--EEEECHHHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCC--EEEECHHHH
Confidence 35799999999999888888888999999999999998888888887766544 556665443
No 239
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=46.88 E-value=60 Score=38.85 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=40.3
Q ss_pred CCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccc-----c-Cc
Q 003311 440 GHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLG-----L-NL 509 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~G-----L-NL 509 (832)
+.++||.+.....+..+...+. ..++++..++|+.+...+...+. . ..+ |++.++...-.- + .+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--~--~~~--Ivv~Tp~~l~~~l~~~~~~~~ 369 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI--E--DSD--IIVVTPQILVNSFEDGTLTSL 369 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH--H--TCS--EEEECHHHHHHHHHSSSCCCG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh--C--CCC--EEEEchHHHHHHHHhcccccc
Confidence 6789999998877665555443 34999999999987655433332 1 122 555554333211 2 45
Q ss_pred ccCCeEEE
Q 003311 510 QTADTVII 517 (832)
Q Consensus 510 ~~ad~VI~ 517 (832)
...+.||+
T Consensus 370 ~~~~~iVi 377 (797)
T 4a2q_A 370 SIFTLMIF 377 (797)
T ss_dssp GGCSEEEE
T ss_pred ccCCEEEE
Confidence 55666665
No 240
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=46.30 E-value=25 Score=31.41 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=37.5
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEec-chhHHHHHHHHHHhCCCeEEEEcCCCCHH
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQ-MTRLMDILEIYLKLNDFKFLRLDGSTKTE 477 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq-~~~~ldiL~~~L~~~g~~~~rldG~ts~~ 477 (832)
+++..+...+..+...+.+|||||. .-.........|...|+.+..++|++..-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 73 YKLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp GGHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred ccHHHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 3444455555554332389999995 55556677788889999999999987653
No 241
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=46.09 E-value=74 Score=34.31 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=29.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHH
Q 003311 136 GILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN 178 (832)
Q Consensus 136 gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~q 178 (832)
.+|.-+.|+|||..++.++..+... .+++++|.+.....+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDP 103 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccch
Confidence 4678899999999888888766543 357888887655443
No 242
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=45.30 E-value=75 Score=39.50 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=51.1
Q ss_pred hhcCCeEEEEecchhHHHHHHHHH----HhCCC----eEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccC
Q 003311 437 RKSGHRVLLFSQMTRLMDILEIYL----KLNDF----KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLN 508 (832)
Q Consensus 437 ~~~g~kvLIFsq~~~~ldiL~~~L----~~~g~----~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLN 508 (832)
...|.++||.+.....+..+.+.+ ...++ .+..++|+++...+....+.+.. .+ |++.+....-.-+.
T Consensus 96 ~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~--IlV~TP~~L~~~l~ 171 (1054)
T 1gku_B 96 ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FK--IVITTTQFLSKHYR 171 (1054)
T ss_dssp HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CS--EEEEEHHHHHHCST
T ss_pred hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CC--EEEEcHHHHHHHHH
Confidence 345779999999987766555555 34467 89999999999888777777766 23 45555433332222
Q ss_pred -cccCCeEEE
Q 003311 509 -LQTADTVII 517 (832)
Q Consensus 509 -L~~ad~VI~ 517 (832)
|...+.||+
T Consensus 172 ~L~~l~~lVi 181 (1054)
T 1gku_B 172 ELGHFDFIFV 181 (1054)
T ss_dssp TSCCCSEEEE
T ss_pred HhccCCEEEE
Confidence 445566655
No 243
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=45.29 E-value=41 Score=33.16 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=33.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFS 184 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~ 184 (832)
+.-.+|+.+.|+|||..++.++..+... .++++++.-.....+....+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCCHHHHHHHHH
Confidence 4445789999999999988887766543 357777776554444444443
No 244
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=44.71 E-value=42 Score=44.46 Aligned_cols=53 Identities=13% Similarity=0.022 Sum_probs=37.0
Q ss_pred hccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHhhC
Q 003311 130 FNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINEFSTWA 187 (832)
Q Consensus 130 ~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~ 187 (832)
+..+.+.+|.-+.|+|||..|++++...... .+.++++.....+.+-. ..+|.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e~~~~~l~--a~~~G 1476 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY--ARKLG 1476 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH--HHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEcccccCHHH--HHHcC
Confidence 3456677899999999999999998765543 34678888765544333 44553
No 245
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=44.69 E-value=50 Score=27.86 Aligned_cols=17 Identities=6% Similarity=-0.052 Sum_probs=10.3
Q ss_pred CCCCChhhHHHHhhhcc
Q 003311 519 DSDWNPQMDQQAEDRAH 535 (832)
Q Consensus 519 D~~wNp~~~~QAigRah 535 (832)
--|.++....+++.++.
T Consensus 99 ~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 99 VKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ECCSSTHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHh
Confidence 35666766666665543
No 246
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=44.15 E-value=72 Score=27.73 Aligned_cols=56 Identities=23% Similarity=0.191 Sum_probs=40.5
Q ss_pred HHHhhhhcCCeEEEEec------chhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcC
Q 003311 432 LLPKLRKSGHRVLLFSQ------MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNA 488 (832)
Q Consensus 432 lL~~l~~~g~kvLIFsq------~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~ 488 (832)
.+.++.. .++|+||+. +-..+.....+|...|++|..++=....+.+..+.+....
T Consensus 10 ~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~ 71 (109)
T 3ipz_A 10 TLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNW 71 (109)
T ss_dssp HHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTC
T ss_pred HHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCC
Confidence 3344333 568999998 5788999999999999999888765566666665554443
No 247
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=43.55 E-value=13 Score=39.36 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=21.0
Q ss_pred hccCCCeEEEcCCCCcHHHHHHHHHHH
Q 003311 130 FNNNLNGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 130 ~~~~~~gILaDemGlGKTiqaiali~~ 156 (832)
...+.+.+|..+.|+|||..+-++...
T Consensus 43 l~~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred HHcCCeEEEECCCCCcHHHHHHHHHHH
Confidence 334678899999999999887666543
No 248
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=43.43 E-value=64 Score=28.38 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=43.2
Q ss_pred eEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCC
Q 003311 442 RVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPD 490 (832)
Q Consensus 442 kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~ 490 (832)
-.+|||.....+..+...++..|..++.+.+....+.|.+.++.|....
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqg 52 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQG 52 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcC
Confidence 3678999999998888889999999999999999999999999997644
No 249
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=42.86 E-value=35 Score=30.97 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=37.3
Q ss_pred EEEEecchh-------HHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhc
Q 003311 443 VLLFSQMTR-------LMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFN 487 (832)
Q Consensus 443 vLIFsq~~~-------~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn 487 (832)
|.||+.... -...+..+|...|+.|..+|=++..+.|.+++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 567766542 236888999999999999999999999999999984
No 250
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=42.71 E-value=81 Score=27.61 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=37.1
Q ss_pred CCeEEEEec------chhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhc
Q 003311 440 GHRVLLFSQ------MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFN 487 (832)
Q Consensus 440 g~kvLIFsq------~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn 487 (832)
.++|+||+. +...+.....+|...|++|..++=....+.|..+.+.-.
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g 68 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSS 68 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHC
Confidence 579999994 567889999999999999988876666666666554433
No 251
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=42.45 E-value=28 Score=34.86 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=19.3
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q 003311 135 NGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 135 ~gILaDemGlGKTiqaiali~~l 157 (832)
+-+++.+.|+|||..+.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999998887765
No 252
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=42.33 E-value=1.8e+02 Score=30.77 Aligned_cols=75 Identities=9% Similarity=0.065 Sum_probs=45.0
Q ss_pred cCCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc-----ccccCc
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-----GLGLNL 509 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-----g~GLNL 509 (832)
.+.++||.+.....+..+.+.+. ..++.+..+.|+........ ..+. .. .|++.+.... ...+++
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~--~Ivv~T~~~l~~~~~~~~~~~ 161 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---RLNE-TV--HILVGTPGRVLDLASRKVADL 161 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---HTTS-CC--SEEEECHHHHHHHHHTTCSCC
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---HhcC-CC--CEEEEchHHHHHHHHhCCccc
Confidence 45689999999877766655554 34788999999988654322 2222 22 3444443321 223456
Q ss_pred ccCCeEEEeC
Q 003311 510 QTADTVIIFD 519 (832)
Q Consensus 510 ~~ad~VI~~D 519 (832)
...+.||+=+
T Consensus 162 ~~~~~vIiDE 171 (400)
T 1s2m_A 162 SDCSLFIMDE 171 (400)
T ss_dssp TTCCEEEEES
T ss_pred ccCCEEEEeC
Confidence 6677777643
No 253
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=42.03 E-value=1.9e+02 Score=29.51 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=44.4
Q ss_pred CCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc-----cccCcc
Q 003311 440 GHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG-----LGLNLQ 510 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg-----~GLNL~ 510 (832)
+.++||.+.....+..+.+.+. ..+..+..+.|+.+....... +.. .+ |++.+....- ..+++.
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~--i~v~T~~~l~~~~~~~~~~~~ 128 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VRN--AD--IVVATPGRLLDLWSKGVIDLS 128 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HTT--CS--EEEECHHHHHHHHHTTSCCGG
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cCC--CC--EEEECHHHHHHHHHcCCcchh
Confidence 6789999999877766666664 346889999999887654433 332 22 4454433321 124555
Q ss_pred cCCeEEE
Q 003311 511 TADTVII 517 (832)
Q Consensus 511 ~ad~VI~ 517 (832)
..+.||+
T Consensus 129 ~~~~iVi 135 (337)
T 2z0m_A 129 SFEIVII 135 (337)
T ss_dssp GCSEEEE
T ss_pred hCcEEEE
Confidence 6666665
No 254
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=41.62 E-value=42 Score=29.00 Aligned_cols=96 Identities=10% Similarity=-0.030 Sum_probs=49.0
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCC--CCCceEEEEeccccccccCcc--cCCe
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAP--DSPYFMFLLSTRAGGLGLNLQ--TADT 514 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~--~~~~~v~LlSt~agg~GLNL~--~ad~ 514 (832)
.|..|..+......++.+ ....+..+.+|-.++...-.++++..+.. .....++++|......-.... .|+.
T Consensus 26 ~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~ 101 (127)
T 3i42_A 26 LGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF 101 (127)
T ss_dssp TTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE
T ss_pred cCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH
Confidence 355666655544444443 34557777777665544444455554432 233456666654432211111 1333
Q ss_pred EEEeCCCCChhhHHHHhhhccccCCc
Q 003311 515 VIIFDSDWNPQMDQQAEDRAHRIGQK 540 (832)
Q Consensus 515 VI~~D~~wNp~~~~QAigRahRiGQ~ 540 (832)
++--|.++....+++.++++-++.
T Consensus 102 --~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 102 --YLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp --EEESSCCHHHHHHHHHHHC-----
T ss_pred --heeCCCCHHHHHHHHHHhhccCCC
Confidence 444678888888888887765543
No 255
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=40.98 E-value=36 Score=29.57 Aligned_cols=39 Identities=5% Similarity=0.140 Sum_probs=32.9
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCH
Q 003311 438 KSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKT 476 (832)
Q Consensus 438 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~ 476 (832)
..+.+++|||..-.........|...|+.+..++|++..
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 456789999988777778888999999999999998664
No 256
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=40.57 E-value=86 Score=26.77 Aligned_cols=60 Identities=22% Similarity=0.191 Sum_probs=42.6
Q ss_pred HHHhhhhcCCeEEEEec------chhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 003311 432 LLPKLRKSGHRVLLFSQ------MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSP 492 (832)
Q Consensus 432 lL~~l~~~g~kvLIFsq------~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~ 492 (832)
.+..+.. .++|+||+. +...+..+..+|...++.|..++=......+..+...+....-|
T Consensus 9 ~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP 74 (105)
T 2yan_A 9 RLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYP 74 (105)
T ss_dssp HHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSC
T ss_pred HHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCC
Confidence 3344443 347889984 56788899999998899998888777777777776666544433
No 257
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=40.55 E-value=32 Score=36.86 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=24.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
..+.+|.-++|+|||..|-++...+ ..|++.+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL------DVPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEech
Confidence 4566889999999999887766544 346665543
No 258
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=40.05 E-value=1e+02 Score=34.83 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=24.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
+++-..|.|||..+..++.++...+ .++++|..
T Consensus 105 ~ivG~~GvGKTTl~~kLA~~l~~~G---~kVllVd~ 137 (504)
T 2j37_W 105 MFVGLQGSGKTTTCSKLAYYYQRKG---WKTCLICA 137 (504)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEec
Confidence 4567789999999988888876542 35566665
No 259
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=39.93 E-value=1.3e+02 Score=31.78 Aligned_cols=54 Identities=13% Similarity=0.007 Sum_probs=32.4
Q ss_pred HHHHHHH-hhccCCCeEEEcCCCCcHHHHHHHHHHHHHHh---cCCCCCEEEEeCCCc
Q 003311 122 GLQWMLS-LFNNNLNGILADEMGLGKTIQTIALIAYLLEN---KGVTGPHVIVAPKAV 175 (832)
Q Consensus 122 gl~wml~-~~~~~~~gILaDemGlGKTiqaiali~~l~~~---~~~~~p~LIV~P~sl 175 (832)
++..++. -+..+.-.+|+.+.|+|||..++.++...... .+..+++++|.-...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3555542 12223335789999999999888777643221 113457788876543
No 260
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=39.73 E-value=1.5e+02 Score=28.53 Aligned_cols=38 Identities=11% Similarity=-0.026 Sum_probs=27.3
Q ss_pred CCeEEEEecchhHHHHHHHHHH----hC----CCeEEEEcCCCCHH
Q 003311 440 GHRVLLFSQMTRLMDILEIYLK----LN----DFKFLRLDGSTKTE 477 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~----~~----g~~~~rldG~ts~~ 477 (832)
+.++||.+.....+..+.+.+. .. ++.+..+.|+.+..
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQ 117 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHH
Confidence 5689999998877666655543 22 67888899987643
No 261
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=39.64 E-value=2.7e+02 Score=27.38 Aligned_cols=127 Identities=9% Similarity=0.028 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhhhc
Q 003311 360 DMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLRKS 439 (832)
Q Consensus 360 ~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~~~ 439 (832)
.+++.|...+..+.......+....|.++.+..++.-+..+.....- ..+ .....
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~----------------~~~---------~~~~~ 99 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLN----------------QQR---------YSKTA 99 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-------------------------------CCB
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccc----------------ccc---------ccccC
Confidence 67999999999887654443333344444433332222222111000 000 00123
Q ss_pred CCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc-----cccCcc
Q 003311 440 GHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG-----LGLNLQ 510 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg-----~GLNL~ 510 (832)
+.++||.+.....+..+.+.+. ..++.+..+.|+.+.......+ .. . ..|++.+....- ..+++.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~--~~Ivv~Tp~~l~~~l~~~~~~~~ 173 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV---QM-G--CHLLVATPGRLVDFIEKNKISLE 173 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH---SS-C--CSEEEECHHHHHHHHHTTSBCCT
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---CC-C--CCEEEECHHHHHHHHHcCCCChh
Confidence 5689999999877666555543 4468888899988765443332 22 2 234554443321 134566
Q ss_pred cCCeEEE
Q 003311 511 TADTVII 517 (832)
Q Consensus 511 ~ad~VI~ 517 (832)
..+.||+
T Consensus 174 ~~~~lVi 180 (253)
T 1wrb_A 174 FCKYIVL 180 (253)
T ss_dssp TCCEEEE
T ss_pred hCCEEEE
Confidence 6666665
No 262
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=39.18 E-value=2.4e+02 Score=28.96 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=44.9
Q ss_pred cCCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc-----cccCc
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG-----LGLNL 509 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg-----~GLNL 509 (832)
.+.++||.+.....++.+.+.+. ..++.+..+.|+.........+. . .+ |++.+....- ..+++
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~--~~--iiv~T~~~l~~~~~~~~~~~ 145 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK---N--AN--IVVGTPGRILDHINRGTLNL 145 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH---T--CS--EEEECHHHHHHHHHTTCSCT
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC---C--CC--EEEecHHHHHHHHHcCCccc
Confidence 46789999998877666666554 35788999999988665544443 2 22 4444443321 12455
Q ss_pred ccCCeEEE
Q 003311 510 QTADTVII 517 (832)
Q Consensus 510 ~~ad~VI~ 517 (832)
...+.||+
T Consensus 146 ~~~~~iIi 153 (367)
T 1hv8_A 146 KNVKYFIL 153 (367)
T ss_dssp TSCCEEEE
T ss_pred ccCCEEEE
Confidence 66666665
No 263
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=39.15 E-value=1.3e+02 Score=26.67 Aligned_cols=49 Identities=14% Similarity=0.032 Sum_probs=37.7
Q ss_pred CCeEEEEec------chhHHHHHHHHHHhCCCe---EEEEcCCCCHHHHHHHHHhhcC
Q 003311 440 GHRVLLFSQ------MTRLMDILEIYLKLNDFK---FLRLDGSTKTEERGTLLKQFNA 488 (832)
Q Consensus 440 g~kvLIFsq------~~~~ldiL~~~L~~~g~~---~~rldG~ts~~eR~~~i~~Fn~ 488 (832)
.++|+||+. +...+..+..+|...|+. |..++=....+.|..+......
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~ 72 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEW 72 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTC
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCC
Confidence 568999998 577889999999999998 8888766666666665554443
No 264
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=39.05 E-value=88 Score=26.96 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=39.6
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc-----cc-cCcccCCeEEEeCCCCChhhHHHHhhhccccC
Q 003311 465 FKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG-----LG-LNLQTADTVIIFDSDWNPQMDQQAEDRAHRIG 538 (832)
Q Consensus 465 ~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg-----~G-LNL~~ad~VI~~D~~wNp~~~~QAigRahRiG 538 (832)
+..+.+|-.++...-.++++.++.......++++|..... .. .....+...-++.-|.++....+++.++..-+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 5666677666655555556555543344455666554321 11 11112223334456777777777777776654
Q ss_pred C
Q 003311 539 Q 539 (832)
Q Consensus 539 Q 539 (832)
+
T Consensus 127 ~ 127 (135)
T 3eqz_A 127 A 127 (135)
T ss_dssp -
T ss_pred c
Confidence 3
No 265
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=38.93 E-value=51 Score=28.60 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=18.6
Q ss_pred CCeEEEEecchhHHHHHHHHHHhCCCeEE
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKLNDFKFL 468 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ 468 (832)
+.+|||..........+...|...|+.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~ 34 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVE 34 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEE
Confidence 44667776666667777777766666554
No 266
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=38.92 E-value=70 Score=28.03 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=14.9
Q ss_pred CeEEEEecchhHHHHHHHHHHhCCCeE
Q 003311 441 HRVLLFSQMTRLMDILEIYLKLNDFKF 467 (832)
Q Consensus 441 ~kvLIFsq~~~~ldiL~~~L~~~g~~~ 467 (832)
.+|||..........+...|...|+.+
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~v 33 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFDS 33 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCeE
Confidence 355555555555555555555555543
No 267
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=38.92 E-value=76 Score=31.39 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=25.5
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCC
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGST 474 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~----~g~~~~rldG~t 474 (832)
.+.++||.+.....+..+.+.+.. .++.+..++|+.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 136 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAA 136 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCc
Confidence 466899999998877766666643 367777666643
No 268
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=38.15 E-value=1.8e+02 Score=31.75 Aligned_cols=73 Identities=10% Similarity=0.061 Sum_probs=45.9
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc-----ccccCc
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKL----NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-----GLGLNL 509 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~----~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-----g~GLNL 509 (832)
.+.++||.+.....+..+.+.+.. .++.+..+.|+.+.......+ .. . +.|++.+.... ...+++
T Consensus 128 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~--~~Ivv~Tp~~l~~~l~~~~~~l 201 (434)
T 2db3_A 128 GRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI---TR-G--CHVVIATPGRLLDFVDRTFITF 201 (434)
T ss_dssp TCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH---TT-C--CSEEEECHHHHHHHHHTTSCCC
T ss_pred CCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh---hc-C--CCEEEEChHHHHHHHHhCCccc
Confidence 356899999998877766666543 467888899999876554433 22 2 23444443322 113566
Q ss_pred ccCCeEEE
Q 003311 510 QTADTVII 517 (832)
Q Consensus 510 ~~ad~VI~ 517 (832)
...+.||+
T Consensus 202 ~~~~~lVl 209 (434)
T 2db3_A 202 EDTRFVVL 209 (434)
T ss_dssp TTCCEEEE
T ss_pred ccCCeEEE
Confidence 77777776
No 269
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=38.07 E-value=20 Score=36.63 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=21.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhc
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENK 161 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~ 161 (832)
|.+-++|.|||+.+++++..+...+
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G 50 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACG 50 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCC
Confidence 5678999999999999999887754
No 270
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=37.90 E-value=1.3e+02 Score=26.28 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=16.7
Q ss_pred CCeEEEEecchhHHHHHHHHHHhCCCeEE
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKLNDFKFL 468 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ 468 (832)
..+|||..........+...|...|+.+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~ 35 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHII 35 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEE
Confidence 34566666666666666666665555443
No 271
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=37.52 E-value=20 Score=36.08 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhc
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENK 161 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~ 161 (832)
|-+-++|.|||+.+++++..+...+
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G 33 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQN 33 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCC
Confidence 4578899999999999999887764
No 272
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=37.31 E-value=19 Score=43.33 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=17.3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIA 155 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~ 155 (832)
.+.+|.-+.|+|||..+=+++.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999988866653
No 273
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=37.25 E-value=1.2e+02 Score=26.09 Aligned_cols=94 Identities=7% Similarity=-0.122 Sum_probs=46.1
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCC--CCCceEEEEeccccccccCcccCCeEE
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAP--DSPYFMFLLSTRAGGLGLNLQTADTVI 516 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~--~~~~~v~LlSt~agg~GLNL~~ad~VI 516 (832)
.|..+..++.....+..+ ....+.++.+|-.++...-.++++..+.. .....++++|...-..-.....+...-
T Consensus 26 ~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~ 101 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDA 101 (133)
T ss_dssp TTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSE
T ss_pred CCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCce
Confidence 456666655554444433 34556777777665544444445444432 123445666654322112211111122
Q ss_pred EeCCCCChhhHHHHhhhccc
Q 003311 517 IFDSDWNPQMDQQAEDRAHR 536 (832)
Q Consensus 517 ~~D~~wNp~~~~QAigRahR 536 (832)
++--|+++....+++.++.+
T Consensus 102 ~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 102 YLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp EEESSCCHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHh
Confidence 33357778877777776654
No 274
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=36.94 E-value=52 Score=34.08 Aligned_cols=42 Identities=21% Similarity=0.116 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHhh----ccCCCeEEEcCCCCcHHHHHHHHHHHH
Q 003311 116 RAYQLEGLQWMLSLF----NNNLNGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 116 r~yQ~egl~wml~~~----~~~~~gILaDemGlGKTiqaiali~~l 157 (832)
++.....+.-++... ....+.+|.-+.|+|||..+-++...+
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 344444444444322 123567899999999998887766543
No 275
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=36.90 E-value=1.5e+02 Score=26.37 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=37.4
Q ss_pred CCeEEEEec------chhHHHHHHHHHHhCCCe-EEEEcCCCCHHHHHHHHHhhcC
Q 003311 440 GHRVLLFSQ------MTRLMDILEIYLKLNDFK-FLRLDGSTKTEERGTLLKQFNA 488 (832)
Q Consensus 440 g~kvLIFsq------~~~~ldiL~~~L~~~g~~-~~rldG~ts~~eR~~~i~~Fn~ 488 (832)
.++|+||+. +...+..+..+|...|++ |..++=....+.+..+.+....
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~ 74 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNW 74 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTC
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCC
Confidence 358999998 578899999999999995 8888866666666665544433
No 276
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=35.74 E-value=22 Score=36.42 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhc
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENK 161 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~ 161 (832)
|-+-++|.|||+.+++++..+...+
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G 55 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAG 55 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCC
Confidence 4578999999999999999887764
No 277
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=35.58 E-value=1.3e+02 Score=40.11 Aligned_cols=56 Identities=16% Similarity=0.053 Sum_probs=40.7
Q ss_pred HHHHHHH--hhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHH
Q 003311 122 GLQWMLS--LFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWI 180 (832)
Q Consensus 122 gl~wml~--~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~ 180 (832)
.+.+++. -+..+.-.+|+.+.|+|||.-++.++..+... .+++++|.-.....+|.
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~---g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECCCcHHHHH
Confidence 3555553 23334445899999999999998888776543 45899998888888886
No 278
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=35.41 E-value=1.3e+02 Score=34.01 Aligned_cols=77 Identities=10% Similarity=0.203 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC-CceEEEEcCC--hhHHHHHHHHHHhhcCCccEEe
Q 003311 145 GKTIQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SIAAVVYDGR--PDERKAMREEFFSERGRFNVLI 220 (832)
Q Consensus 145 GKTiqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p-~~~v~~~~g~--~~~r~~~~~~~~~~~~~~dVvI 220 (832)
.+....+..+...+......+++||.|+. ..+......+...++ +..+..++|. ...|......+.. +..+|+|
T Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vLv 397 (563)
T 3i5x_A 320 NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGILV 397 (563)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEE
T ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc--CCCCEEE
Confidence 34444444454444443456689999997 445556666766655 6788888885 4456555555544 7888999
Q ss_pred cCH
Q 003311 221 THY 223 (832)
Q Consensus 221 tTy 223 (832)
+|-
T Consensus 398 aT~ 400 (563)
T 3i5x_A 398 CTD 400 (563)
T ss_dssp ECG
T ss_pred Ecc
Confidence 984
No 279
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=35.39 E-value=1.1e+02 Score=31.82 Aligned_cols=35 Identities=20% Similarity=0.083 Sum_probs=23.8
Q ss_pred HHHHHHH-hhccCCCeEEEcCCCCcHHHHHHHHHHH
Q 003311 122 GLQWMLS-LFNNNLNGILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 122 gl~wml~-~~~~~~~gILaDemGlGKTiqaiali~~ 156 (832)
++..++. -+..+.-.+|+-+.|+|||..++.++..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555552 1223334588999999999988877764
No 280
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=35.10 E-value=1.1e+02 Score=34.16 Aligned_cols=115 Identities=10% Similarity=-0.021 Sum_probs=66.0
Q ss_pred EcCCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhhh
Q 003311 358 KCDMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKLR 437 (832)
Q Consensus 358 ~~~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l~ 437 (832)
...+++.|...+..+.......+.... .+||-......+....
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~t-------------------------------------GsGKT~~~~~~~~~~~ 153 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPT-------------------------------------SAGRSLIQALLARYYL 153 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCS-------------------------------------TTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCC-------------------------------------CCCHHHHHHHHHHHHH
Confidence 457899999998887754333222222 2344333333332222
Q ss_pred hcC-CeEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccc--cCcc
Q 003311 438 KSG-HRVLLFSQMTRLMDILEIYLKLN----DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLG--LNLQ 510 (832)
Q Consensus 438 ~~g-~kvLIFsq~~~~ldiL~~~L~~~----g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~G--LNL~ 510 (832)
..+ .++||.+..+..+..+.+.|... +..+..++|+.+..++ ..+. ..|++.+....... ..+.
T Consensus 154 ~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~--~~I~i~T~~~l~~~~~~~~~ 224 (510)
T 2oca_A 154 ENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKND--APVVVGTWQTVVKQPKEWFS 224 (510)
T ss_dssp HHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTT--CSEEEEEHHHHTTSCGGGGG
T ss_pred hCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccC--CcEEEEeHHHHhhchhhhhh
Confidence 223 39999999988887777777543 3578889988775443 1223 33666666554333 3344
Q ss_pred cCCeEEEe
Q 003311 511 TADTVIIF 518 (832)
Q Consensus 511 ~ad~VI~~ 518 (832)
..+.||+=
T Consensus 225 ~~~liIiD 232 (510)
T 2oca_A 225 QFGMMMND 232 (510)
T ss_dssp GEEEEEEE
T ss_pred cCCEEEEE
Confidence 55555553
No 281
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=34.65 E-value=2.7e+02 Score=29.51 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=33.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHH
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLK 484 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~ 484 (832)
.+.++||.+.....+..+.+.+. ..++.+..+.|+.+..+....+.
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 153 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 153 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh
Confidence 46789999999877776666554 34688899999988766554443
No 282
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=34.53 E-value=46 Score=34.49 Aligned_cols=34 Identities=21% Similarity=0.057 Sum_probs=23.3
Q ss_pred HHHHHHhhccC---CCe-EEEcCCCCcHHHHHHHHHHH
Q 003311 123 LQWMLSLFNNN---LNG-ILADEMGLGKTIQTIALIAY 156 (832)
Q Consensus 123 l~wml~~~~~~---~~g-ILaDemGlGKTiqaiali~~ 156 (832)
+.|+..+.... .++ +|..+.|+|||..+.+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34444444332 444 67899999999999888754
No 283
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=34.31 E-value=45 Score=32.58 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
|..-..|.|||.+++.++..+...+ .++|++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G---~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG---YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT---CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcc
Confidence 4556789999999999998887653 36777765
No 284
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=34.25 E-value=53 Score=34.36 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=17.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIA 155 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~ 155 (832)
.+.+|.-+.|+|||..+-++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4678899999999988866643
No 285
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=34.18 E-value=54 Score=34.73 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHHHH
Q 003311 142 MGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 142 mGlGKTiqaiali~~l~~ 159 (832)
=|+|||=.++.++..|..
T Consensus 47 GGTGKTP~vi~L~~~L~~ 64 (315)
T 4ehx_A 47 GGSGKTSFVMYLADLLKD 64 (315)
T ss_dssp SCCSHHHHHHHHHHHTTT
T ss_pred CCCChHHHHHHHHHHHhh
Confidence 489999999999887743
No 286
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=34.02 E-value=46 Score=33.65 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=30.3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe-CCCchHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA-PKAVLPNWI 180 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~-P~sll~qW~ 180 (832)
.+.++....|.|||..++.+...+...+ ....++.+ |..-...|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G--~~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG--VRVMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCCTTCHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC--CCEEEEEeCCCCChhHHH
Confidence 3467889999999999999998887753 22323333 444455554
No 287
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=33.86 E-value=1.1e+02 Score=26.25 Aligned_cols=53 Identities=21% Similarity=0.188 Sum_probs=40.3
Q ss_pred CCeEEEEec------chhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 003311 440 GHRVLLFSQ------MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSP 492 (832)
Q Consensus 440 g~kvLIFsq------~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~ 492 (832)
.++|+||+. +...+..+..+|...|+.|..++=......+..+........-+
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP 72 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYP 72 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSC
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCC
Confidence 457999987 44578888999999999999999887777777776666543333
No 288
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=33.70 E-value=1.6e+02 Score=26.39 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=38.9
Q ss_pred CCeEEEEec------chhHHHHHHHHHHhCCC-eEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 003311 440 GHRVLLFSQ------MTRLMDILEIYLKLNDF-KFLRLDGSTKTEERGTLLKQFNAPDSPYFMFL 497 (832)
Q Consensus 440 g~kvLIFsq------~~~~ldiL~~~L~~~g~-~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~L 497 (832)
.++|+||+- +..........|...|+ .|..++=....+.|+.+.+.-+.+.-| .||+
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvP-qIFI 82 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIP-QVYL 82 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSC-EEEE
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCC-eEeE
Confidence 369999975 34667778888888887 577777777777777666655544332 3444
No 289
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=33.29 E-value=2e+02 Score=30.36 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=16.2
Q ss_pred hccCCCeEEEcCCCCcHHHHH
Q 003311 130 FNNNLNGILADEMGLGKTIQT 150 (832)
Q Consensus 130 ~~~~~~gILaDemGlGKTiqa 150 (832)
...+....+.-++|+|||...
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 345667788999999999654
No 290
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=33.22 E-value=3.4e+02 Score=28.64 Aligned_cols=131 Identities=13% Similarity=0.044 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHHHhcccccccCCCcchhHHHHHHHHHHhhCCCccccccccchhhHHHHhhcchHHHHHHHHHhh---
Q 003311 360 DMSAWQKVYYQQVTDVGRVGLDTGTGKSKSLQNLSMQLRKCCNHPYLFVGEYNMWRKEEIIRASGKFELLDRLLPKL--- 436 (832)
Q Consensus 360 ~ms~~Q~~lY~~i~~~~~~~~~~~~~~~~~l~~~~~~LRk~cnhP~l~~~~~~~~~~~~l~~~S~Kl~~L~~lL~~l--- 436 (832)
.+++.|...+..+.......+....|.++.+..++.-+..+..++ .+ ..+ ..+...
T Consensus 37 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~-------------------~~-~~~-~~~~~~~~~ 95 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG-------------------PG-EAL-RAMKENGRY 95 (417)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC-------------------CC-HHH-HHHHHCBTT
T ss_pred CCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc-------------------cc-chh-hcccccccc
Confidence 589999999988876544444444444554433332222221110 00 000 000000
Q ss_pred --hhcCCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc-----c
Q 003311 437 --RKSGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG-----L 505 (832)
Q Consensus 437 --~~~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg-----~ 505 (832)
...+.++||.+.....+..+.+.+. ..++.+..+.|+.+..+....+ .. .. .|++.+....- .
T Consensus 96 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~--~I~v~Tp~~l~~~l~~~ 169 (417)
T 2i4i_A 96 GRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL---ER-GC--HLLVATPGRLVDMMERG 169 (417)
T ss_dssp BSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH---TT-CC--SEEEECHHHHHHHHHTT
T ss_pred ccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh---hC-CC--CEEEEChHHHHHHHHcC
Confidence 1123579999999877766655553 4578899999998876544333 22 22 35555543321 1
Q ss_pred ccCcccCCeEEE
Q 003311 506 GLNLQTADTVII 517 (832)
Q Consensus 506 GLNL~~ad~VI~ 517 (832)
.+++...+.||+
T Consensus 170 ~~~~~~~~~iVi 181 (417)
T 2i4i_A 170 KIGLDFCKYLVL 181 (417)
T ss_dssp SBCCTTCCEEEE
T ss_pred CcChhhCcEEEE
Confidence 345666777666
No 291
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=32.76 E-value=1.1e+02 Score=40.03 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=31.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPN 178 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~q 178 (832)
+...+|+.+.|+|||..++.++...... .++++++.-.....+
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~---g~~VlyiS~Ees~~q 774 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDP 774 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc---CCCeEEEeccchHHH
Confidence 3345889999999999999888776653 347788776554444
No 292
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=32.55 E-value=1.4e+02 Score=33.84 Aligned_cols=74 Identities=11% Similarity=0.212 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCC-CchHHHHHHHHhhCC-CceEEEEcCC--hhHHHHHHHHHHhhcCCccEEecCH
Q 003311 148 IQTIALIAYLLENKGVTGPHVIVAPK-AVLPNWINEFSTWAP-SIAAVVYDGR--PDERKAMREEFFSERGRFNVLITHY 223 (832)
Q Consensus 148 iqaiali~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p-~~~v~~~~g~--~~~r~~~~~~~~~~~~~~dVvItTy 223 (832)
...+..+...+......+++||.||. ..+..+...+...++ +..+..++|. ...|......+.. +..+|+|+|-
T Consensus 272 ~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~--g~~~vLVaT~ 349 (579)
T 3sqw_A 272 FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGILVCTD 349 (579)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEEECG
T ss_pred HHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc--CCCeEEEEcc
Confidence 34444444444433445689999996 445666777776654 6788888886 4456555555544 6788999884
No 293
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=32.54 E-value=72 Score=30.50 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=24.6
Q ss_pred cCCeEEEEecchhHHHH-HHHHHH---hCCCeEEEEcCCCCH
Q 003311 439 SGHRVLLFSQMTRLMDI-LEIYLK---LNDFKFLRLDGSTKT 476 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldi-L~~~L~---~~g~~~~rldG~ts~ 476 (832)
.+.++||.+.....++. +.+.+. ..++.+..++|+...
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~ 122 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQL 122 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---C
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCccc
Confidence 36789999998877655 444443 237889999987654
No 294
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=32.18 E-value=2.5e+02 Score=24.23 Aligned_cols=90 Identities=11% Similarity=0.042 Sum_probs=45.3
Q ss_pred CCeEEEEecchhHHHHHHHHHHh-CCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEe-ccccccccCcccCCeEEE
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKL-NDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLS-TRAGGLGLNLQTADTVII 517 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~-~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlS-t~agg~GLNL~~ad~VI~ 517 (832)
|..+..+......+..+ .. ..+..+.+|-.++...-.++++..+.......++++| ... .... .... ..-+
T Consensus 39 g~~v~~~~~~~~al~~l----~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~-~~~~-~~~~ 111 (138)
T 2b4a_A 39 GAEVTVHPSGSAFFQHR----SQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRH-ELIE-SSEH-NLSY 111 (138)
T ss_dssp TCEEEEESSHHHHHHTG----GGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC---CCC-CSSS-CEEE
T ss_pred CCEEEEeCCHHHHHHHH----HhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC-CHHH-HHHH-HHhe
Confidence 55555444433333322 23 3466667776555433445566665533345566666 332 2222 2222 2223
Q ss_pred eCCCCChhhHHHHhhhccc
Q 003311 518 FDSDWNPQMDQQAEDRAHR 536 (832)
Q Consensus 518 ~D~~wNp~~~~QAigRahR 536 (832)
+--|.++....+++.++.+
T Consensus 112 l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 112 LQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp EESSCCHHHHHHHHHHTCC
T ss_pred eeCCCCHHHHHHHHHHHHH
Confidence 3456788888888877654
No 295
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=31.83 E-value=35 Score=34.51 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=19.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l 157 (832)
..+.+|..+.|+|||..+-++...+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3456789999999999887776543
No 296
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=30.99 E-value=3.1e+02 Score=26.56 Aligned_cols=44 Identities=23% Similarity=0.182 Sum_probs=26.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHH-HhcCCCCCEEEEeCCCchHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLL-ENKGVTGPHVIVAPKAVLPNW 179 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~-~~~~~~~p~LIV~P~sll~qW 179 (832)
+.-..|.-+.|+|||..+-.++.... .. .+..+++.-.....+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~---~~~~~~~~~~~~~~~~ 74 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLEERARDL 74 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSSCHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCeEEEEEccCCHHHH
Confidence 44457789999999987766654333 22 2355666554444443
No 297
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=30.27 E-value=71 Score=34.46 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=32.5
Q ss_pred cCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHH
Q 003311 132 NNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWIN 181 (832)
Q Consensus 132 ~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~ 181 (832)
.+.+.++.-.+|+|||..+-.++..+... .++++|+=|..-...+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~ 80 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ---GSRVIIIDPEREYKEMCR 80 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEESSCCSHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC---CCEEEEEeCCcCHHHHHH
Confidence 46788999999999998776666555432 356778877654444433
No 298
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=30.01 E-value=1.7e+02 Score=25.94 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=42.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHhhcCCccEE--ecCHHHHHHhHHHHhhcCceEEEEeCCcccCC-hhhHHHHHHHc-cc
Q 003311 189 SIAAVVYDGRPDERKAMREEFFSERGRFNVL--ITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN-HECALAKTISG-YQ 264 (832)
Q Consensus 189 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVv--ItTye~l~~d~~~L~~~~w~~vIiDEaHriKN-~~sk~~kal~~-l~ 264 (832)
..++++.......+..+...+... +.+.++ ..+.+... ..+....+++||+|-. +.. ....+.+.++. ..
T Consensus 15 ~~~iLivdd~~~~~~~l~~~L~~~-~~~~~v~~~~~~~~a~---~~l~~~~~dlii~d~~--l~~~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 15 KVRVVVGDDHPLFREGVVRALSLS-GSVNVVGEADDGAAAL---ELIKAHLPDVALLDYR--MPGMDGAQVAAAVRSYEL 88 (152)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHH-SSEEEEEEESSHHHHH---HHHHHHCCSEEEEETT--CSSSCHHHHHHHHHHTTC
T ss_pred eEEEEEEcCCHHHHHHHHHHHhhC-CCeEEEEEeCCHHHHH---HHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhcCC
Confidence 455666666665555554443332 323332 33343332 3445567999999943 222 23345555543 34
Q ss_pred cceEEEeeccC
Q 003311 265 IQRRLLLTGTP 275 (832)
Q Consensus 265 ~~~rllLTGTP 275 (832)
....+++|+.+
T Consensus 89 ~~~ii~~s~~~ 99 (152)
T 3eul_A 89 PTRVLLISAHD 99 (152)
T ss_dssp SCEEEEEESCC
T ss_pred CCeEEEEEccC
Confidence 45678888864
No 299
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=29.82 E-value=1.9e+02 Score=26.96 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=36.1
Q ss_pred CCCEEEEeCC-CchHHHHHHHHhhCCCceEEEEcCCh--hHHHHHHHHHHhhcCCccEEecC
Q 003311 164 TGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGRP--DERKAMREEFFSERGRFNVLITH 222 (832)
Q Consensus 164 ~~p~LIV~P~-sll~qW~~E~~k~~p~~~v~~~~g~~--~~r~~~~~~~~~~~~~~dVvItT 222 (832)
.+++||.|+. ..+......+... +..+..++|.. ..|......+.. +...|+|+|
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~--g~~~vLvaT 88 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKD--FQRRILVAT 88 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEEES
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHC--CCCcEEEEC
Confidence 4589999996 4455555556554 46677788763 445555554443 678899988
No 300
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=29.78 E-value=1.4e+02 Score=27.33 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=38.7
Q ss_pred CeEEEEec------chhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCC
Q 003311 441 HRVLLFSQ------MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPD 490 (832)
Q Consensus 441 ~kvLIFsq------~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~ 490 (832)
.+|+||+. +...+..+..+|...|++|..++=....+.+..+........
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~t 90 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPT 90 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCS
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCC
Confidence 47889977 567899999999999999998887777777777666554433
No 301
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=29.71 E-value=4.3e+02 Score=27.71 Aligned_cols=74 Identities=7% Similarity=0.067 Sum_probs=43.6
Q ss_pred cCCeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc----c-ccccCc
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA----G-GLGLNL 509 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a----g-g~GLNL 509 (832)
.+.++||.+.....+..+.+.+. ..+..+..+.|+...... +.....+..+ |++.+... . ...+++
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--iiv~T~~~l~~~l~~~~~~~ 181 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPH--IIVGTPGRVFDMLNRRYLSP 181 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCS--EEEECHHHHHHHHHHTSSCS
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCC--EEEECHHHHHHHHHcCCccc
Confidence 46689999999877666665554 457888888888876544 3334433333 44444322 1 122445
Q ss_pred ccCCeEEE
Q 003311 510 QTADTVII 517 (832)
Q Consensus 510 ~~ad~VI~ 517 (832)
...+.||+
T Consensus 182 ~~~~~vVi 189 (414)
T 3eiq_A 182 KYIKMFVL 189 (414)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 55665555
No 302
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=29.49 E-value=1.8e+02 Score=26.67 Aligned_cols=55 Identities=15% Similarity=0.279 Sum_probs=36.0
Q ss_pred CCCEEEEeCCC-chHHHHHHHHhhCCCceEEEEcCC--hhHHHHHHHHHHhhcCCccEEecC
Q 003311 164 TGPHVIVAPKA-VLPNWINEFSTWAPSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITH 222 (832)
Q Consensus 164 ~~p~LIV~P~s-ll~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~dVvItT 222 (832)
.+++||.|+.. .+......+... +..+..++|. ...|......+.. +...|+|+|
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~--g~~~vlv~T 92 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKR--GEYRYLVAT 92 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEEEC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEC
Confidence 45899999963 445555555554 4677788886 3455555554443 678899998
No 303
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=29.12 E-value=28 Score=39.45 Aligned_cols=28 Identities=14% Similarity=0.017 Sum_probs=21.2
Q ss_pred HhhccCCCeEEEcCCCCcHHHHHHHHHH
Q 003311 128 SLFNNNLNGILADEMGLGKTIQTIALIA 155 (832)
Q Consensus 128 ~~~~~~~~gILaDemGlGKTiqaiali~ 155 (832)
.....+.+.+|..++|+|||..+-++..
T Consensus 36 ~al~~~~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 36 LAALSGESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp HHHHHTCEEEEECCSSSSHHHHHHHGGG
T ss_pred HHHhcCCeeEeecCchHHHHHHHHHHHH
Confidence 3334477889999999999988766554
No 304
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=28.94 E-value=42 Score=39.22 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=42.1
Q ss_pred CCeEEEEecchhHHHHH-HHHHHhC---CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccccc----------
Q 003311 440 GHRVLLFSQMTRLMDIL-EIYLKLN---DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGL---------- 505 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL-~~~L~~~---g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~---------- 505 (832)
+.++||.+.....+.-+ .+.|... ++.+..++|+.+..++...+. . . ..|+++|+...-.
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~--~--~--~~Ilv~Tp~~L~~~l~~~~~~~~ 129 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV--K--S--CDIIISTAQILENSLLNLENGED 129 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH--H--S--CSEEEEEHHHHHHHTC-------
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh--c--C--CCEEEECHHHHHHHHhccccccc
Confidence 47899999988776655 5555432 389999999987554333332 1 2 2366666655442
Q ss_pred -ccCcccCCeEEE
Q 003311 506 -GLNLQTADTVII 517 (832)
Q Consensus 506 -GLNL~~ad~VI~ 517 (832)
.+.+...+.||+
T Consensus 130 ~~~~~~~~~lvVi 142 (699)
T 4gl2_A 130 AGVQLSDFSLIII 142 (699)
T ss_dssp -CCCGGGCSEEEE
T ss_pred cceecccCcEEEE
Confidence 245667777776
No 305
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=28.93 E-value=45 Score=36.64 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=29.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCC
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKA 174 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~s 174 (832)
..+.++...+|+|||...-.++..++.. ..+++|+=|+.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~---g~~viv~Dpkg 91 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLR---GDRMVIVDPNG 91 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHT---TCEEEEEEETT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEeCCC
Confidence 5788999999999999765566666553 24677777764
No 306
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=28.58 E-value=36 Score=41.03 Aligned_cols=22 Identities=27% Similarity=0.224 Sum_probs=17.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALI 154 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali 154 (832)
+.+.+|.-+.|+|||..+-++.
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 4456889999999998775554
No 307
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=28.28 E-value=1.2e+02 Score=28.82 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=32.0
Q ss_pred CCCCEEEEeCCC-chHHHHHHHHhhCCCceEEEEcCCh--hHHHHHHHHHHhhcCCccEEecC
Q 003311 163 VTGPHVIVAPKA-VLPNWINEFSTWAPSIAAVVYDGRP--DERKAMREEFFSERGRFNVLITH 222 (832)
Q Consensus 163 ~~~p~LIV~P~s-ll~qW~~E~~k~~p~~~v~~~~g~~--~~r~~~~~~~~~~~~~~dVvItT 222 (832)
..+++||.|+.. .+......+... +..+..++|.. ..|......+.. +...|+|+|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~--g~~~vLvaT 103 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 103 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHH--TSSSEEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEc
Confidence 456899999974 344444445442 56777888754 344444444433 678899988
No 308
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=27.42 E-value=1.9e+02 Score=27.70 Aligned_cols=55 Identities=27% Similarity=0.325 Sum_probs=37.1
Q ss_pred CCCEEEEeCC-CchHHHHHHHHhhCCCceEEEEcCC--hhHHHHHHHHHHhhcCCccEEecC
Q 003311 164 TGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITH 222 (832)
Q Consensus 164 ~~p~LIV~P~-sll~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~dVvItT 222 (832)
.+++||.|+. ..+......+... ++.+..++|. ...|......+.. +...|+|+|
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLvaT 111 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFRE--GKKDVLVAT 111 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHH--TSCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhc--CCCEEEEEc
Confidence 3579999996 4455555666554 4667788886 4455555555543 678899999
No 309
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=27.31 E-value=59 Score=27.60 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=31.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCC
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 475 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts 475 (832)
.+.+++|||..-.........|...|+++..++|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4679999999877778888889999999999999754
No 310
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=27.03 E-value=52 Score=35.27 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=19.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l 157 (832)
..+.+|..++|+|||..+-++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3456889999999998887766544
No 311
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=26.86 E-value=2.4e+02 Score=24.82 Aligned_cols=82 Identities=16% Similarity=0.037 Sum_probs=44.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEe-cCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHc-cccce
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLI-THYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQIQR 267 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvI-tTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~-l~~~~ 267 (832)
+++++.......+..+...+......+.|.. .+.+.+ ...+....+++||+|-.-- ......+.+.++. .....
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a---l~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~~ 96 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEA---IQLLEKESVDIAILDVEMP-VKTGLEVLEWIRSEKLETK 96 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHH---HHHHTTSCCSEEEECSSCS-SSCHHHHHHHHHHTTCSCE
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHH---HHHhhccCCCEEEEeCCCC-CCcHHHHHHHHHHhCCCCe
Confidence 4666666666666655544432211122322 223322 3456677899999994321 1223445555543 44567
Q ss_pred EEEeeccC
Q 003311 268 RLLLTGTP 275 (832)
Q Consensus 268 rllLTGTP 275 (832)
.+++|+.+
T Consensus 97 ii~ls~~~ 104 (150)
T 4e7p_A 97 VVVVTTFK 104 (150)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 78888865
No 312
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=26.71 E-value=3.7e+02 Score=28.22 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=19.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEE
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 170 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV 170 (832)
.|.-+.|+|||..+-.++..+... .|.++++
T Consensus 133 ~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~ 163 (328)
T 3e70_C 133 MFVGFNGSGKTTTIAKLANWLKNH---GFSVVIA 163 (328)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHhc---CCEEEEE
Confidence 567889999997665554444332 3455544
No 313
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=26.71 E-value=1.9e+02 Score=28.09 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=35.6
Q ss_pred CCCEEEEeCCC-chHHHHHHHHhhCCCceEEEEcCC--hhHHHHHHHHHHhhcCCccEEecC
Q 003311 164 TGPHVIVAPKA-VLPNWINEFSTWAPSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITH 222 (832)
Q Consensus 164 ~~p~LIV~P~s-ll~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~dVvItT 222 (832)
.+++||.||.. .+......+... +..+..++|. ...|......+.. +..+|+|+|
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~--g~~~vlvaT 88 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQ--GEVRVLVAT 88 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHS--SSCCEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHC--CCCeEEEec
Confidence 46899999963 344444555544 4567777876 4455555554443 678899998
No 314
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=26.55 E-value=83 Score=35.05 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHH
Q 003311 116 RAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLE 159 (832)
Q Consensus 116 r~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~ 159 (832)
+...+.-+.-++.. ....+.+|..+.|+|||..+-+++..+..
T Consensus 185 r~~~i~~l~~~l~r-~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 185 RSKEIQRVIEVLSR-RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CHHHHHHHHHHHHC-SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHhc-cCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444444432 23446689999999999998777766543
No 315
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=26.20 E-value=3e+02 Score=25.82 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=48.3
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccccccCcccCCeEEEe
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIF 518 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg~GLNL~~ad~VI~~ 518 (832)
....+.|.|........++..|...|+++..+++... .|. .. +.++|--..-|+- .++||++
T Consensus 60 g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~---~~---v~v~t~~~~KGlE---f~~V~~~ 121 (174)
T 3dmn_A 60 ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA---PG---VIVVPSFLAKGLE---FDAVIVW 121 (174)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC---SS---EEEEEGGGCTTCC---EEEEEEE
T ss_pred CCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC---CC---eEEEEccccCCcC---CCEEEEe
Confidence 3567888888888899999999999999988877542 121 22 4555656667754 7899999
Q ss_pred CCCC
Q 003311 519 DSDW 522 (832)
Q Consensus 519 D~~w 522 (832)
++..
T Consensus 122 ~~~~ 125 (174)
T 3dmn_A 122 NANQ 125 (174)
T ss_dssp TCBT
T ss_pred cCCc
Confidence 8764
No 316
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=26.05 E-value=58 Score=27.74 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=31.6
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCC
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 475 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts 475 (832)
.+.+++|||..-.........|...|+.+..++|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4678999999877777888889999999999999754
No 317
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=25.93 E-value=80 Score=27.12 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=31.7
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhCCCe-EEEEcCCCCH
Q 003311 438 KSGHRVLLFSQMTRLMDILEIYLKLNDFK-FLRLDGSTKT 476 (832)
Q Consensus 438 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~-~~rldG~ts~ 476 (832)
..+..|||||..-.........|...|+. +..|+|++..
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 35678999999877777888889999995 8889997654
No 318
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=25.87 E-value=77 Score=33.12 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=22.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
++.-..|.|||..+..++..+... .++++++.-
T Consensus 102 ~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 102 MLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp EEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 356789999999887777666543 345565544
No 319
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=25.70 E-value=3.5e+02 Score=30.44 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=20.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEE
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 170 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV 170 (832)
.|.-..|+|||...-.++..+... .|.++|+
T Consensus 297 ~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~ 327 (503)
T 2yhs_A 297 LMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLA 327 (503)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred EEECCCcccHHHHHHHHHHHhhhc---CCeEEEe
Confidence 467889999997765554444332 4566665
No 320
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=25.32 E-value=2.2e+02 Score=26.48 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=35.6
Q ss_pred CCCEEEEeCCC-chHHHHHHHHhhCCCceEEEEcCC--hhHHHHHHHHHHhhcCCccEEecC
Q 003311 164 TGPHVIVAPKA-VLPNWINEFSTWAPSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITH 222 (832)
Q Consensus 164 ~~p~LIV~P~s-ll~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~dVvItT 222 (832)
.+++||.|+.. .+......+... +..+..++|. ...|......+.. +..+|+|+|
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~--g~~~vLvaT 91 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRD--GKEKVLITT 91 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHT--TSCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEe
Confidence 46899999973 444455555543 4567778876 3455555555443 678899988
No 321
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=25.24 E-value=45 Score=36.09 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=17.5
Q ss_pred hhccCCCe-EEE-cCCCCcHHHHHHH
Q 003311 129 LFNNNLNG-ILA-DEMGLGKTIQTIA 152 (832)
Q Consensus 129 ~~~~~~~g-ILa-DemGlGKTiqaia 152 (832)
.+.++.+| |+| ..+|+|||.++..
T Consensus 79 ~~~~G~n~tifAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 79 LYENGCVCSCFAYGQTGSGKTYTMLG 104 (360)
T ss_dssp HHHHCCEEEEEEECCTTSSHHHHHHB
T ss_pred hccCCceeEEEeeCCCCCCCCEEEec
Confidence 34457776 665 8899999998754
No 322
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=25.14 E-value=2.3e+02 Score=25.11 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=41.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEec-CHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHc-cccce
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLIT-HYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQIQR 267 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvIt-Tye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~-l~~~~ 267 (832)
.++++.......+..+...+.. ..|.|..+ +.+.. ...+....+++||+|=.-- ...+..+.+.++. .....
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~--~g~~v~~~~~~~~a---~~~l~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~ 88 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSP--LPYTLHFARDATQA---LQLLASREVDLVISAAHLP-QMDGPTLLARIHQQYPSTT 88 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT--SSCEEEEESSHHHH---HHHHHHSCCSEEEEESCCS-SSCHHHHHHHHHHHCTTSE
T ss_pred ceEEEECCCHHHHHHHHHHhcc--cCcEEEEECCHHHH---HHHHHcCCCCEEEEeCCCC-cCcHHHHHHHHHhHCCCCe
Confidence 3455555555555544443322 23544433 22222 2345566899999994321 1223445555533 34556
Q ss_pred EEEeeccC
Q 003311 268 RLLLTGTP 275 (832)
Q Consensus 268 rllLTGTP 275 (832)
.+++|+.+
T Consensus 89 ii~~s~~~ 96 (153)
T 3hv2_A 89 RILLTGDP 96 (153)
T ss_dssp EEEECCCC
T ss_pred EEEEECCC
Confidence 78888865
No 323
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=25.05 E-value=1.6e+02 Score=34.04 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=43.9
Q ss_pred hcchHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcC
Q 003311 422 ASGKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDG 472 (832)
Q Consensus 422 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG 472 (832)
.+||-..+..++..+...|.+|||-++....+|-|...|...+.+++|+-.
T Consensus 215 GTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG~ 265 (646)
T 4b3f_X 215 GTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGH 265 (646)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECSC
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEecc
Confidence 467888888888888888999999999999999999999888999988743
No 324
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=24.59 E-value=2.5e+02 Score=25.69 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=35.4
Q ss_pred CCCEEEEeCC-CchHHHHHHHHhhCCCceEEEEcCC--hhHHHHHHHHHHhhcCCccEEecC
Q 003311 164 TGPHVIVAPK-AVLPNWINEFSTWAPSIAAVVYDGR--PDERKAMREEFFSERGRFNVLITH 222 (832)
Q Consensus 164 ~~p~LIV~P~-sll~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~~dVvItT 222 (832)
.+++||.|+. ..+......+... +..+..++|. ...|......+.. +...|+|+|
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T 87 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRS--GSSRILIST 87 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHc--CCCEEEEEc
Confidence 4689999996 4444455555553 4567778876 3455555544433 677899888
No 325
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=24.54 E-value=69 Score=31.43 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=24.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAP 172 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P 172 (832)
|..-.-|.|||..++.++..+...+ .++|+|-.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g---~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRG---RKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcC---CeEEEEeC
Confidence 4456779999999999988887642 36677654
No 326
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=24.53 E-value=2.1e+02 Score=33.06 Aligned_cols=72 Identities=11% Similarity=0.182 Sum_probs=42.5
Q ss_pred CeEEEEecchhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccccc----cc-c-Ccc
Q 003311 441 HRVLLFSQMTRLMDILEIYLK----LNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAGG----LG-L-NLQ 510 (832)
Q Consensus 441 ~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~agg----~G-L-NL~ 510 (832)
.++||.+.....+......+. ..++.+..++|+++...+...+. . . ..|++++....- .| + ++.
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--~--~--~~Iiv~Tp~~L~~~l~~~~~~~l~ 135 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV--E--N--NDIIILTPQILVNNLKKGTIPSLS 135 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH--H--T--CSEEEECHHHHHHHHHTTSSCCGG
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc--c--C--CCEEEECHHHHHHHHhcCcccccc
Confidence 689999988766655544443 34899999999886433222221 1 1 235565554432 12 3 566
Q ss_pred cCCeEEEe
Q 003311 511 TADTVIIF 518 (832)
Q Consensus 511 ~ad~VI~~ 518 (832)
..+.||+=
T Consensus 136 ~~~~vViD 143 (696)
T 2ykg_A 136 IFTLMIFD 143 (696)
T ss_dssp GCSEEEEE
T ss_pred cccEEEEe
Confidence 67777773
No 327
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=24.25 E-value=2.8e+02 Score=23.35 Aligned_cols=84 Identities=10% Similarity=0.060 Sum_probs=45.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecC-HHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHcc---cc
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITH-YDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISGY---QI 265 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItT-ye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~l---~~ 265 (832)
.++++.......+..+...+.. ..+.|..++ .+.. ...+....+++||+|-.-- ...+..+.+.++.. ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~--~g~~v~~~~~~~~a---~~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~~ 77 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEM--LGFQADYVMSGTDA---LHAMSTRGYDAVFIDLNLP-DTSGLALVKQLRALPMEKT 77 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHH--TTEEEEEESSHHHH---HHHHHHSCCSEEEEESBCS-SSBHHHHHHHHHHSCCSSC
T ss_pred ceEEEEcCCHHHHHHHHHHHHH--cCCCEEEECCHHHH---HHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHhhhccCC
Confidence 3455566666555555444433 245544332 2222 3445667799999994321 22344556666543 45
Q ss_pred ceEEEeeccCCCCC
Q 003311 266 QRRLLLTGTPIQNS 279 (832)
Q Consensus 266 ~~rllLTGTPlqN~ 279 (832)
...+++|+.+-...
T Consensus 78 ~~ii~~s~~~~~~~ 91 (127)
T 3i42_A 78 SKFVAVSGFAKNDL 91 (127)
T ss_dssp CEEEEEECC-CTTC
T ss_pred CCEEEEECCcchhH
Confidence 56788888765443
No 328
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=24.24 E-value=54 Score=28.40 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=30.8
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCC
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 475 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts 475 (832)
.+++++|||..-.-......+|...|+....+.|++.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 4678999998776667778889999999999999754
No 329
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=23.83 E-value=2.8e+02 Score=27.95 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=24.3
Q ss_pred CeEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCC
Q 003311 441 HRVLLFSQMTRLMDILEIYLKLN----DFKFLRLDGSTK 475 (832)
Q Consensus 441 ~kvLIFsq~~~~ldiL~~~L~~~----g~~~~rldG~ts 475 (832)
.++||.+.....+..+.+.+... +..+..+.|+..
T Consensus 158 ~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~ 196 (282)
T 1rif_A 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGAS 196 (282)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCS
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCc
Confidence 48999999887777666666543 346677777654
No 330
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=23.59 E-value=1.6e+02 Score=24.32 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=35.9
Q ss_pred eEEEEecc-hhHH------HHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhc
Q 003311 442 RVLLFSQM-TRLM------DILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFN 487 (832)
Q Consensus 442 kvLIFsq~-~~~l------diL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn 487 (832)
+|+||+.. .... ..+..+|...|+.|..+|=....+.|..+.+...
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g 55 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAG 55 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 57788754 3445 6888889999999999998888888887777765
No 331
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=23.53 E-value=74 Score=36.07 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHH
Q 003311 115 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALI 154 (832)
Q Consensus 115 Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali 154 (832)
+-+.+...+...+ ..+.+.+++-++|+|||...-+++
T Consensus 245 ~~~~~l~~l~~~v---~~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 245 VPSGVLAYLWLAI---EHKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp SCHHHHHHHHHHH---HTTCCEEEEESTTSSHHHHHHHHG
T ss_pred CCHHHHHHHHHHH---hCCCEEEEECCCCCCHHHHHHHHH
Confidence 3344444554444 456667889999999996654443
No 332
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.48 E-value=3e+02 Score=23.39 Aligned_cols=39 Identities=8% Similarity=-0.010 Sum_probs=23.8
Q ss_pred cCceEEEEeCCcccCChhhHHHHHHHcc---ccceEEEeeccC
Q 003311 236 VQWIYMIVDEGHRLKNHECALAKTISGY---QIQRRLLLTGTP 275 (832)
Q Consensus 236 ~~w~~vIiDEaHriKN~~sk~~kal~~l---~~~~rllLTGTP 275 (832)
..+++||+|-.-- ...+..+.+.++.. .....+++|+.+
T Consensus 54 ~~~dlvi~d~~~~-~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 54 SRPDLILLXLNLP-KKDGREVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp CCCSEEEECSSCS-SSCHHHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred CCCcEEEEecCCC-cccHHHHHHHHHcCcccccccEEEEecCC
Confidence 6799999995321 12234555556443 345678888865
No 333
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=23.42 E-value=1.5e+02 Score=25.27 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=12.4
Q ss_pred eEEEEecchhHHHHHHHHHHhCCCeE
Q 003311 442 RVLLFSQMTRLMDILEIYLKLNDFKF 467 (832)
Q Consensus 442 kvLIFsq~~~~ldiL~~~L~~~g~~~ 467 (832)
++||..........+...|...|+.+
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v 32 (132)
T 2rdm_A 7 TILLADDEAILLLDFESTLTDAGFLV 32 (132)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHcCCEE
Confidence 44444444444444555444444433
No 334
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=23.41 E-value=1.1e+02 Score=30.53 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=17.0
Q ss_pred CCeEEEcCCCCcHHHHHHHHHH
Q 003311 134 LNGILADEMGLGKTIQTIALIA 155 (832)
Q Consensus 134 ~~gILaDemGlGKTiqaiali~ 155 (832)
.+.+|..+.|+|||..+-++..
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999987765554
No 335
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=23.31 E-value=73 Score=29.91 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=52.9
Q ss_pred chHHHHHHHHHhhhhcCCeEEEEecchhHHHHHHHHHHhC---CCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEec
Q 003311 424 GKFELLDRLLPKLRKSGHRVLLFSQMTRLMDILEIYLKLN---DFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLST 500 (832)
Q Consensus 424 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~---g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt 500 (832)
.++.+..+++.+....|.||+|.|.....++.|-+.|=.. .+--.-+.|.-.. ...+ ++|++
T Consensus 23 ~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~~------------~~~P---V~L~~ 87 (150)
T 3sxu_A 23 AVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPR------------GGAP---VEIAW 87 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSST------------TCCS---EEEEC
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCCC------------CCCC---EEEeC
Confidence 4677888999999999999999999999999999988322 2222223343221 1334 45554
Q ss_pred cccccccCcccCCeEEEeCCCC
Q 003311 501 RAGGLGLNLQTADTVIIFDSDW 522 (832)
Q Consensus 501 ~agg~GLNL~~ad~VI~~D~~w 522 (832)
... .+-..++.+|+++..+
T Consensus 88 ~~~---~~~~~~~vLinL~~~~ 106 (150)
T 3sxu_A 88 PQK---RSSSRRDILISLRTSF 106 (150)
T ss_dssp TTS---CCCSCCSEEEECCSSC
T ss_pred CCC---CCCCcCCEEEECCCCC
Confidence 221 1123577899998876
No 336
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=23.30 E-value=73 Score=35.76 Aligned_cols=58 Identities=2% Similarity=-0.208 Sum_probs=37.2
Q ss_pred HHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHH
Q 003311 123 LQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAVLPNWINE 182 (832)
Q Consensus 123 l~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sll~qW~~E 182 (832)
+..++.-+..+.-.+|+...|+|||..++.++....... ..++|++.--....+....
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E~s~~~l~~r 289 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLEESVEETAED 289 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESSSCHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEeccCCHHHHHHH
Confidence 444443233344468999999999999988887665431 3478888765444444433
No 337
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=23.27 E-value=2.5e+02 Score=24.37 Aligned_cols=83 Identities=13% Similarity=0.162 Sum_probs=42.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHc---cccc
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG---YQIQ 266 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~---l~~~ 266 (832)
.++++.......+..+...+.. ..+.+.+.+......-...+....+++||+|-.-- ......+.+.++. ...-
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~--~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g~~~~~~lr~~~~~~~~ 82 (144)
T 3kht_A 6 KRVLVVEDNPDDIALIRRVLDR--KDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLP-IANGFEVMSAVRKPGANQHT 82 (144)
T ss_dssp EEEEEECCCHHHHHHHHHHHHH--TTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCG-GGCHHHHHHHHHSSSTTTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHh--cCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCC-CCCHHHHHHHHHhcccccCC
Confidence 4455555555555554444333 23332222222222223445667899999994311 1123455556654 3445
Q ss_pred eEEEeeccC
Q 003311 267 RRLLLTGTP 275 (832)
Q Consensus 267 ~rllLTGTP 275 (832)
..+++|+..
T Consensus 83 pii~~s~~~ 91 (144)
T 3kht_A 83 PIVILTDNV 91 (144)
T ss_dssp CEEEEETTC
T ss_pred CEEEEeCCC
Confidence 678888754
No 338
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=23.24 E-value=83 Score=31.46 Aligned_cols=32 Identities=28% Similarity=0.190 Sum_probs=24.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
|..-.-|.|||..++.++..+...+ .++|+|-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g---~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLG---HDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCC---CcEEEEE
Confidence 4567789999999999988887642 3667765
No 339
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=23.20 E-value=56 Score=30.72 Aligned_cols=25 Identities=32% Similarity=0.161 Sum_probs=19.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l 157 (832)
....+|.-.+|+|||.++-.+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456788999999998887766544
No 340
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=23.16 E-value=2.2e+02 Score=24.50 Aligned_cols=81 Identities=12% Similarity=0.026 Sum_probs=41.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEec-CHHHHHHhHHHHhhcCceEEEEeCCcc----cCChhhHHHHHHHc-c
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLIT-HYDLIMRDRQYLKKVQWIYMIVDEGHR----LKNHECALAKTISG-Y 263 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvIt-Tye~l~~d~~~L~~~~w~~vIiDEaHr----iKN~~sk~~kal~~-l 263 (832)
.++++.......+..+...+.. ..+.|..+ +.+.. ...+....+++||+|-.-- .......+.+.++. .
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~--~g~~v~~~~~~~~a---~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKN--HFSKVITLSSPVSL---STVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT--TSSEEEEECCHHHH---HHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred ceEEEEeCCHHHHHHHHHHHHh--CCcEEEEeCCHHHH---HHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 3455555555555555444332 23444432 22222 2345566799999995321 01123344445533 3
Q ss_pred ccceEEEeeccC
Q 003311 264 QIQRRLLLTGTP 275 (832)
Q Consensus 264 ~~~~rllLTGTP 275 (832)
.....+++|+.+
T Consensus 79 ~~~~ii~ls~~~ 90 (140)
T 2qr3_A 79 RDLPVVLFTAYA 90 (140)
T ss_dssp TTCCEEEEEEGG
T ss_pred cCCCEEEEECCC
Confidence 456678888764
No 341
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=23.07 E-value=54 Score=27.47 Aligned_cols=35 Identities=20% Similarity=0.460 Sum_probs=29.6
Q ss_pred CeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCC
Q 003311 441 HRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTK 475 (832)
Q Consensus 441 ~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts 475 (832)
.+++|||+.-.........|...|+++..++|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999877777788888888999888999865
No 342
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=22.93 E-value=1.9e+02 Score=25.06 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=41.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCC-hhhHHHHHHHc-cccce
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN-HECALAKTISG-YQIQR 267 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN-~~sk~~kal~~-l~~~~ 267 (832)
.++++.......+..+...+.. ..|.|..++ ....-...+....+++||+|- +.. ....+.+.++. .....
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~--~g~~v~~~~--~~~~a~~~l~~~~~dlvi~d~---~~~~~g~~~~~~l~~~~~~~p 77 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEK--DGFNVIWAK--NEQEAFTFLRREKIDLVFVDV---FEGEESLNLIRRIREEFPDTK 77 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGG--GTCEEEEES--SHHHHHHHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHCTTCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHh--CCCEEEEEC--CHHHHHHHHhccCCCEEEEeC---CCCCcHHHHHHHHHHHCCCCC
Confidence 3455566665555555444432 345554332 112222445667899999995 222 22334444433 34466
Q ss_pred EEEeeccC
Q 003311 268 RLLLTGTP 275 (832)
Q Consensus 268 rllLTGTP 275 (832)
.+++|+.+
T Consensus 78 ii~ls~~~ 85 (142)
T 2qxy_A 78 VAVLSAYV 85 (142)
T ss_dssp EEEEESCC
T ss_pred EEEEECCC
Confidence 78888864
No 343
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=22.84 E-value=1.6e+02 Score=24.97 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=16.2
Q ss_pred CeEEEEecchhHHHHHHHHHHhCCCeEE
Q 003311 441 HRVLLFSQMTRLMDILEIYLKLNDFKFL 468 (832)
Q Consensus 441 ~kvLIFsq~~~~ldiL~~~L~~~g~~~~ 468 (832)
.++||..........+...|...|+.+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~ 31 (126)
T 1dbw_A 4 YTVHIVDDEEPVRKSLAFMLTMNGFAVK 31 (126)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCcEEE
Confidence 3566666666666666666655555443
No 344
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=22.68 E-value=1.2e+02 Score=25.93 Aligned_cols=98 Identities=7% Similarity=0.014 Sum_probs=0.0
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCe--------------------EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFK--------------------FLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 498 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~--------------------~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~Ll 498 (832)
.+.++||..........+...|...|+. .+.+|-.++...-.++++..+.......++++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 85 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVI 85 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Q ss_pred eccccccc-cCcccCCeEEEeCCCC-ChhhHHHHhhhccc
Q 003311 499 STRAGGLG-LNLQTADTVIIFDSDW-NPQMDQQAEDRAHR 536 (832)
Q Consensus 499 St~agg~G-LNL~~ad~VI~~D~~w-Np~~~~QAigRahR 536 (832)
|...-... .....+...-++.-|. ++....+++.++.+
T Consensus 86 t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 86 SATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp ECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC
T ss_pred EcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhc
No 345
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=22.67 E-value=2.2e+02 Score=24.00 Aligned_cols=56 Identities=9% Similarity=0.027 Sum_probs=40.5
Q ss_pred eEEEEecc-hhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEE
Q 003311 442 RVLLFSQM-TRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLL 498 (832)
Q Consensus 442 kvLIFsq~-~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~Ll 498 (832)
+|.||+.. ...+.....+|...|++|..++=...++.++.+.+. +.|...+.++++
T Consensus 5 ~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~-~~G~~tVP~I~i 61 (92)
T 2lqo_A 5 ALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSV-NGGNRTVPTVKF 61 (92)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHH-SSSSSCSCEEEE
T ss_pred cEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHH-cCCCCEeCEEEE
Confidence 68888764 356888899999999999999988888877776654 333333344443
No 346
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=22.56 E-value=1e+02 Score=36.51 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=28.0
Q ss_pred eEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHH
Q 003311 442 RVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEER 479 (832)
Q Consensus 442 kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR 479 (832)
-+.|.+........|++.|...|++|....| .+--+|
T Consensus 353 diAIL~R~~~~~~~le~~L~~~gIPy~~~g~-~~f~~~ 389 (724)
T 1pjr_A 353 DFAVLYRTNAQSRVMEEMLLKANIPYQIVGG-LKFYDR 389 (724)
T ss_dssp GEEEEESSGGGHHHHHHHHHHTTCCEEEETS-CCGGGS
T ss_pred heeeeeecchhHHHHHHHHHHcCCCEEEeCC-cchhhC
Confidence 4677777777889999999999999977655 544333
No 347
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=22.29 E-value=91 Score=26.71 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=32.1
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhCCCe-EEEEcCCCCHH
Q 003311 438 KSGHRVLLFSQMTRLMDILEIYLKLNDFK-FLRLDGSTKTE 477 (832)
Q Consensus 438 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~-~~rldG~ts~~ 477 (832)
..+.+++|||..-.........|...|+. +..++|++..-
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 96 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHH
Confidence 45788999999877777788888888995 88899987643
No 348
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=22.16 E-value=3.7e+02 Score=23.02 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=8.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhc
Q 003311 464 DFKFLRLDGSTKTEERGTLLKQFN 487 (832)
Q Consensus 464 g~~~~rldG~ts~~eR~~~i~~Fn 487 (832)
.+..+.+|-.++...-..++...+
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~~~l~ 69 (140)
T 3n53_A 46 HPDLVILDMDIIGENSPNLCLKLK 69 (140)
T ss_dssp CCSEEEEETTC------CHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHH
Confidence 344555554444433333444443
No 349
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=22.13 E-value=2.2e+02 Score=25.14 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=42.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHc-cccceE
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQIQRR 268 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~-l~~~~r 268 (832)
.++++.......+..+...+.. ..+.|+.++ ....-...+....+++||+|-.-- ......+.+.++. ......
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~--~g~~v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~i 82 (154)
T 2rjn_A 8 YTVMLVDDEQPILNSLKRLIKR--LGCNIITFT--SPLDALEALKGTSVQLVISDMRMP-EMGGEVFLEQVAKSYPDIER 82 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT--TTCEEEEES--CHHHHHHHHTTSCCSEEEEESSCS-SSCHHHHHHHHHHHCTTSEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHH--cCCeEEEeC--CHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCCCcE
Confidence 4555666665555555444332 235544332 111222445566799999995321 1123345555543 345567
Q ss_pred EEeeccC
Q 003311 269 LLLTGTP 275 (832)
Q Consensus 269 llLTGTP 275 (832)
+++|+.+
T Consensus 83 i~ls~~~ 89 (154)
T 2rjn_A 83 VVISGYA 89 (154)
T ss_dssp EEEECGG
T ss_pred EEEecCC
Confidence 8888865
No 350
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=21.88 E-value=58 Score=32.80 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=21.1
Q ss_pred EcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEE
Q 003311 139 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 170 (832)
Q Consensus 139 aDemGlGKTiqaiali~~l~~~~~~~~p~LIV 170 (832)
+---|.|||..++.++..+... ..++|+|
T Consensus 7 s~KGGvGKTT~a~nLA~~la~~---G~~Vlli 35 (269)
T 1cp2_A 7 YGKGGIGKSTTTQNLTSGLHAM---GKTIMVV 35 (269)
T ss_dssp EECTTSSHHHHHHHHHHHHHTT---TCCEEEE
T ss_pred ecCCCCcHHHHHHHHHHHHHHC---CCcEEEE
Confidence 3466999999999988887654 2356664
No 351
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=21.72 E-value=95 Score=27.76 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=39.8
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc-ccccC
Q 003311 439 SGHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-GLGLN 508 (832)
Q Consensus 439 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-g~GLN 508 (832)
.+.+|||..........+...|...|+.+..... . .+++........ .++|+..... ..|+.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~---~---~~a~~~l~~~~~--dlvi~d~~l~~~~g~~ 68 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTS---P---LDALEALKGTSV--QLVISDMRMPEMGGEV 68 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESC---H---HHHHHHHTTSCC--SEEEEESSCSSSCHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCC---H---HHHHHHHhcCCC--CEEEEecCCCCCCHHH
Confidence 3568999999999999999999888887664332 2 334455544333 3566665543 34554
No 352
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=21.72 E-value=2.4e+02 Score=24.38 Aligned_cols=80 Identities=15% Similarity=0.047 Sum_probs=41.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEEecC-HHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHc---ccc
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVLITH-YDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG---YQI 265 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItT-ye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~---l~~ 265 (832)
.++++.......+..+...+.. ..+.|..++ .+.. ...+....+++||+|-..- ......+.+.++. ...
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~--~g~~v~~~~~~~~a---~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~~ 81 (142)
T 3cg4_A 8 GDVMIVDDDAHVRIAVKTILSD--AGFHIISADSGGQC---IDLLKKGFSGVVLLDIMMP-GMDGWDTIRAILDNSLEQG 81 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH--TTCEEEEESSHHHH---HHHHHTCCCEEEEEESCCS-SSCHHHHHHHHHHTTCCTT
T ss_pred CeEEEEcCCHHHHHHHHHHHHH--CCeEEEEeCCHHHH---HHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHhhcccCC
Confidence 3455555555555444443332 234443322 2222 2345566799999995332 1233455566644 345
Q ss_pred ceEEEeeccC
Q 003311 266 QRRLLLTGTP 275 (832)
Q Consensus 266 ~~rllLTGTP 275 (832)
...+++|+.+
T Consensus 82 ~pii~~s~~~ 91 (142)
T 3cg4_A 82 IAIVMLTAKN 91 (142)
T ss_dssp EEEEEEECTT
T ss_pred CCEEEEECCC
Confidence 5678888765
No 353
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=21.64 E-value=2.5e+02 Score=25.32 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=43.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEE--ecCHHHHHHhHHHHhhcCceEEEEeCCcccCC-hhhHHHHHHHccccc
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVL--ITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKN-HECALAKTISGYQIQ 266 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVv--ItTye~l~~d~~~L~~~~w~~vIiDEaHriKN-~~sk~~kal~~l~~~ 266 (832)
.++++.......+..+...+... +.+.++ ..+.+... ..+....+++||+|=. +.+ .+..+.+.++.....
T Consensus 26 ~~ILivdd~~~~~~~l~~~L~~~-~~~~~v~~~~~~~~al---~~l~~~~~dlvilD~~--l~~~~g~~l~~~lr~~~~~ 99 (164)
T 3t8y_A 26 IRVLVVDDSAFMRMVLKDIIDSQ-PDMKVVGFAKDGLEAV---EKAIELKPDVITMDIE--MPNLNGIEALKLIMKKAPT 99 (164)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTS-TTEEEEEEESSHHHHH---HHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHHSCC
T ss_pred cEEEEEcCCHHHHHHHHHHHhcC-CCeEEEEecCCHHHHH---HHhccCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCc
Confidence 45666666666665555443321 233333 33343332 3345567999999942 222 234555566544446
Q ss_pred eEEEeeccC
Q 003311 267 RRLLLTGTP 275 (832)
Q Consensus 267 ~rllLTGTP 275 (832)
..+++|+..
T Consensus 100 ~ii~~s~~~ 108 (164)
T 3t8y_A 100 RVIMVSSLT 108 (164)
T ss_dssp EEEEEESSC
T ss_pred eEEEEecCC
Confidence 778888754
No 354
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=21.60 E-value=1.3e+02 Score=24.49 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=27.7
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhCCCe-EEEEcCCCC
Q 003311 438 KSGHRVLLFSQMTRLMDILEIYLKLNDFK-FLRLDGSTK 475 (832)
Q Consensus 438 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~-~~rldG~ts 475 (832)
..+.+++|||+.-.........|...|++ +..+ |+..
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 45678999999876677778888888985 4455 6644
No 355
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=21.45 E-value=76 Score=29.91 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=18.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l 157 (832)
+...+|.-.+|+|||.++-.+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4456788999999998876655433
No 356
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=21.43 E-value=2.4e+02 Score=26.39 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=43.6
Q ss_pred cCCeEEEEec----chhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEeccc
Q 003311 439 SGHRVLLFSQ----MTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRA 502 (832)
Q Consensus 439 ~g~kvLIFsq----~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~a 502 (832)
...++|++|- +.--+.++..+|...|+.+..+...++.++-.+.+.+++. + ++.+|...
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~---d--iV~lS~~~ 79 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDV---D--VIGVSILN 79 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTC---S--EEEEEESS
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCC---C--EEEEEeec
Confidence 3568888873 4456889999999999999999889998877676666643 2 45555443
No 357
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=21.37 E-value=2.2e+02 Score=23.99 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=11.5
Q ss_pred eEEEEecchhHHHHHHHHHHhCCCe
Q 003311 442 RVLLFSQMTRLMDILEIYLKLNDFK 466 (832)
Q Consensus 442 kvLIFsq~~~~ldiL~~~L~~~g~~ 466 (832)
++||.-........+...|...|+.
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~ 28 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYE 28 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEE
Confidence 3444444444444444444444443
No 358
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=21.30 E-value=65 Score=33.08 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=20.8
Q ss_pred cCCCCcHHHHHHHHHHHHHHhcCCCCCEEEE
Q 003311 140 DEMGLGKTIQTIALIAYLLENKGVTGPHVIV 170 (832)
Q Consensus 140 DemGlGKTiqaiali~~l~~~~~~~~p~LIV 170 (832)
---|.|||..++.++..+...+ .++|+|
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G---~rVlli 71 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLN---LKVLMI 71 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred CCCCchHHHHHHHHHHHHHhCC---CeEEEE
Confidence 4779999999999888776542 356664
No 359
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=20.94 E-value=83 Score=27.51 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=21.6
Q ss_pred CeEEEEecchhHHHHHHHHHHhCCCeEEEE
Q 003311 441 HRVLLFSQMTRLMDILEIYLKLNDFKFLRL 470 (832)
Q Consensus 441 ~kvLIFsq~~~~ldiL~~~L~~~g~~~~rl 470 (832)
.+|||..........+...|...|+.+...
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~ 36 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCF 36 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEe
Confidence 467777777777788888887777765533
No 360
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=20.83 E-value=68 Score=33.20 Aligned_cols=29 Identities=17% Similarity=0.113 Sum_probs=21.9
Q ss_pred EcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEE
Q 003311 139 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 170 (832)
Q Consensus 139 aDemGlGKTiqaiali~~l~~~~~~~~p~LIV 170 (832)
+---|.|||..++.++..+...+ .++|+|
T Consensus 47 ~~KGGvGKTT~a~nLA~~La~~G---~~Vlli 75 (307)
T 3end_A 47 YGKGGIGKSTTSSNLSAAFSILG---KRVLQI 75 (307)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred ECCCCccHHHHHHHHHHHHHHCC---CeEEEE
Confidence 36889999999999988887652 355555
No 361
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=20.81 E-value=3.6e+02 Score=23.66 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=42.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhcCCccEE--ecCHHHHHHhHHHHhhcCceEEEEeCCcccCChhhHHHHHHHc-cccc
Q 003311 190 IAAVVYDGRPDERKAMREEFFSERGRFNVL--ITHYDLIMRDRQYLKKVQWIYMIVDEGHRLKNHECALAKTISG-YQIQ 266 (832)
Q Consensus 190 ~~v~~~~g~~~~r~~~~~~~~~~~~~~dVv--ItTye~l~~d~~~L~~~~w~~vIiDEaHriKN~~sk~~kal~~-l~~~ 266 (832)
.++++.......+..+...+.. ...+.++ ..+..... ..+....+++||+|-.-- ......+.+.++. ....
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~-~~~~~v~~~~~~~~~a~---~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~ 80 (153)
T 3cz5_A 6 ARIMLVDDHPIVREGYRRLIER-RPGYAVVAEAADAGEAY---RLYRETTPDIVVMDLTLP-GPGGIEATRHIRQWDGAA 80 (153)
T ss_dssp EEEEEECSCHHHHHHHHHHHTT-STTEEEEEEESSHHHHH---HHHHTTCCSEEEECSCCS-SSCHHHHHHHHHHHCTTC
T ss_pred cEEEEECCcHHHHHHHHHHHhh-CCCcEEEEEeCCHHHHH---HHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCCC
Confidence 4555566555555554444322 1244443 33333332 345566799999995321 1223445555543 3455
Q ss_pred eEEEeeccC
Q 003311 267 RRLLLTGTP 275 (832)
Q Consensus 267 ~rllLTGTP 275 (832)
..+++|+.+
T Consensus 81 ~ii~ls~~~ 89 (153)
T 3cz5_A 81 RILIFTMHQ 89 (153)
T ss_dssp CEEEEESCC
T ss_pred eEEEEECCC
Confidence 678888765
No 362
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=20.75 E-value=93 Score=27.87 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=38.9
Q ss_pred CCeEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEEecccc-ccccC
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKLNDFKFLRLDGSTKTEERGTLLKQFNAPDSPYFMFLLSTRAG-GLGLN 508 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~ts~~eR~~~i~~Fn~~~~~~~v~LlSt~ag-g~GLN 508 (832)
+.+|||..........+...|...|+.+..... . .+++..+..... .++|+..... ..|+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~---~---~~a~~~l~~~~~--dliild~~l~~~~g~~ 64 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFAS---A---TEALAGLSADFA--GIVISDIRMPGMDGLA 64 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESC---H---HHHHHTCCTTCC--SEEEEESCCSSSCHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECC---H---HHHHHHHHhCCC--CEEEEeCCCCCCCHHH
Confidence 457899998888899999999888887664432 2 345555554333 3566665543 24543
No 363
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.73 E-value=1.5e+02 Score=26.00 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=21.5
Q ss_pred CCeEEEEecchhHHHHHHHHHHhCCCeE
Q 003311 440 GHRVLLFSQMTRLMDILEIYLKLNDFKF 467 (832)
Q Consensus 440 g~kvLIFsq~~~~ldiL~~~L~~~g~~~ 467 (832)
+.+|||..........+...|...|+.+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~ 32 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHC 32 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCe
Confidence 4577888888888888888888777763
No 364
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=20.67 E-value=69 Score=32.79 Aligned_cols=29 Identities=34% Similarity=0.366 Sum_probs=21.4
Q ss_pred EcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEE
Q 003311 139 ADEMGLGKTIQTIALIAYLLENKGVTGPHVIV 170 (832)
Q Consensus 139 aDemGlGKTiqaiali~~l~~~~~~~~p~LIV 170 (832)
+---|.|||..|+.+...|...+ .++|+|
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~G---~rVlli 36 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEMG---KKVMIV 36 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred eCCCcCcHHHHHHHHHHHHHHCC---CeEEEE
Confidence 34679999999999988887642 355554
No 365
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=20.61 E-value=1.3e+02 Score=25.16 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=6.8
Q ss_pred CCChhhHHHHhhhc
Q 003311 521 DWNPQMDQQAEDRA 534 (832)
Q Consensus 521 ~wNp~~~~QAigRa 534 (832)
|+++....+++.++
T Consensus 105 P~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 105 PFQPSRVVEALNKV 118 (120)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 44555555544443
No 366
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=20.60 E-value=88 Score=31.51 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=23.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEe
Q 003311 137 ILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVA 171 (832)
Q Consensus 137 ILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~ 171 (832)
|..---|.|||..++.++..+...+ .++|+|=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G---~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQG---KKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 4456779999999999988887642 3667765
No 367
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=20.59 E-value=1.9e+02 Score=25.18 Aligned_cols=84 Identities=7% Similarity=-0.051 Sum_probs=0.0
Q ss_pred CCceEEEEcCChhHHHHHHHHHHhhcCCccEEecCHHHHHHhHHHHhh-cCceEEEEeCCcccCChhhHHHHHHHccccc
Q 003311 188 PSIAAVVYDGRPDERKAMREEFFSERGRFNVLITHYDLIMRDRQYLKK-VQWIYMIVDEGHRLKNHECALAKTISGYQIQ 266 (832)
Q Consensus 188 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~dVvItTye~l~~d~~~L~~-~~w~~vIiDEaHriKN~~sk~~kal~~l~~~ 266 (832)
...++++.......+..+...+ ....+-+.+..........+.. ..+++||+|=.---...+..+.+.++.....
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L----~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~ 79 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANIL----NKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISEL 79 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHH----HHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHH----HHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCC
Q ss_pred eEEEeeccC
Q 003311 267 RRLLLTGTP 275 (832)
Q Consensus 267 ~rllLTGTP 275 (832)
..+++|+..
T Consensus 80 ~ii~ls~~~ 88 (140)
T 3h5i_A 80 PVVFLTAHT 88 (140)
T ss_dssp CEEEEESSS
T ss_pred CEEEEECCC
No 368
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=20.54 E-value=69 Score=30.77 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=19.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q 003311 133 NLNGILADEMGLGKTIQTIALIAYL 157 (832)
Q Consensus 133 ~~~gILaDemGlGKTiqaiali~~l 157 (832)
+...+|.-.+|+|||..+-.+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4456789999999998886666544
No 369
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=20.49 E-value=1.1e+02 Score=28.03 Aligned_cols=38 Identities=3% Similarity=-0.127 Sum_probs=29.2
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhCCCe-EEEEcCCCC
Q 003311 438 KSGHRVLLFSQMTRLMDILEIYLKLNDFK-FLRLDGSTK 475 (832)
Q Consensus 438 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~-~~rldG~ts 475 (832)
..+.+|||||+.-.........|...|++ +..++|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 35678999999765566778888899994 899999875
No 370
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=20.43 E-value=1.2e+02 Score=41.41 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHHHhhccCCCeEEEcCCCCcHHHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Q 003311 115 LRAYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLLENKGVTGPHVIVAPKAV 175 (832)
Q Consensus 115 Lr~yQ~egl~wml~~~~~~~~gILaDemGlGKTiqaiali~~l~~~~~~~~p~LIV~P~sl 175 (832)
.-+++..=+-.+......+.+.+|..++|+|||...=.++..+..-.+....+.++-|+++
T Consensus 905 ~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~ 965 (2695)
T 4akg_A 905 MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVL 965 (2695)
T ss_dssp CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTS
T ss_pred ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 3345544444455555566777899999999998765554444332222334567778754
No 371
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=20.35 E-value=82 Score=27.91 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=30.7
Q ss_pred cCCeEEEEecchhH--HHHHHHHHHhCCCeEEEEcCCCCH
Q 003311 439 SGHRVLLFSQMTRL--MDILEIYLKLNDFKFLRLDGSTKT 476 (832)
Q Consensus 439 ~g~kvLIFsq~~~~--ldiL~~~L~~~g~~~~rldG~ts~ 476 (832)
.+.++||||..-.. .......|...|+.+..++|++..
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 47789999987654 677888888899998899998654
No 372
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=20.05 E-value=1.3e+02 Score=26.29 Aligned_cols=16 Identities=0% Similarity=-0.097 Sum_probs=8.0
Q ss_pred CCChhhHHHHhhhccc
Q 003311 521 DWNPQMDQQAEDRAHR 536 (832)
Q Consensus 521 ~wNp~~~~QAigRahR 536 (832)
|.++....+++.++.+
T Consensus 105 P~~~~~l~~~i~~~~~ 120 (142)
T 2qxy_A 105 PFRLDYLLERVKKIIS 120 (142)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4455555555555444
Done!