BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003313
(831 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 1086 bits (2808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/846 (65%), Positives = 650/846 (76%), Gaps = 29/846 (3%)
Query: 13 ENCNCGGIDLARLPLDEVFGQLGTTRQGLSSEDAEVRLKFFGSNKLEKKPENKFLKFLSF 72
E+ +DL ++P++EVF QL +R+GL++++ E R++ FG NKLE+K E+K LKFL F
Sbjct: 5 EDIKNETVDLEKIPIEEVFQQLKCSREGLTTQEGEDRIQIFGPNKLEEKKESKLLKFLGF 64
Query: 73 MWNPLSWVMETAALMAIALANGGGQGPDWQDSVGIVCLLXXXXXXXXXXXXXXXXATAAL 132
MWNPLSWVME AA+MAIALANG G+ PDWQD VGI+CLL A AAL
Sbjct: 65 MWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAAL 124
Query: 133 MAHLTPKTKVLRDGQWKEQDAAVLVPGDIISIKFGDVIPADARLLEGDPLKIDQSELTGE 192
MA L PKTKVLRDG+W EQ+AA+LVPGDI+SIK GD+IPADARLLEGDPLK+DQS LTGE
Sbjct: 125 MAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGE 184
Query: 193 SLTVTKETGDEVFSGLTCKH-----------VHSFFGKAADLVDSTEVVGHFQQVLTSIG 241
SL VTK G EVFSG TCK VH+FFGKAA LVDST VGHFQ+VLT+IG
Sbjct: 185 SLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIG 244
Query: 242 NFCICFITVGMILEIIVMFPIQHRLYRDRIN----------------MLSVTLAIASYRL 285
NFCIC I +GM++EIIVM+PIQ R YRD I+ +LSVT+AI S+RL
Sbjct: 245 NFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL 304
Query: 286 SQRGAITKRMTAIEEMARMDVLCSVKTAALTLNRLTVDRNLIEVFNRDMDKDILVLLAAR 345
SQ+GAITKRMTAIEEMA MDVLCS KT LTLN+L+VD+NL+EVF + ++KD ++L AA
Sbjct: 305 SQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAM 364
Query: 346 ASRLENQDAIDAAIINMLADPKEARANINEVHFLPFNPVDKRTAITYTDSEGNWYRASKG 405
ASR+ENQDAIDAA++ MLADPKEARA I EVHFLPFNPVDKRTA+TY D GNW+R SKG
Sbjct: 365 ASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKG 424
Query: 406 APEQILNMCQEKEEIGGKVHEIINKLAEKGLRSLAVAVQEVPEMTEDSPGGPRSFCGLLP 465
APEQIL + + ++ KV II+K AE+GLRSLAVA Q VPE T++SPG P F GLLP
Sbjct: 425 APEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKESPGAPWEFVGLLP 484
Query: 466 LFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKETGRRLGIGTNMYPSSLLLGRDKDE 525
LFDPPRHDS++TI RAL LGV VKMITGD LAI KETGRRLG+GTNMYPSS LLG KD
Sbjct: 485 LFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKDA 544
Query: 526 NEA-LPVDELIEKADGFTDVFAEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADXXXX 584
N A +PV+ELIEKADGF VF EHKYEIVK LQE+KH+VGMTGDGVNDAPALKKAD
Sbjct: 545 NLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIA 604
Query: 585 XXXXXXXXXXXXXXVLTEPGLSVICSAVLTSRTVFQIMKNCMIHAVSITIHIVLSFVLLA 644
VLTEPGLSVI SAVLTSR +FQ MKN I+AVSITI IV F+L+A
Sbjct: 605 VADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIA 664
Query: 645 LIWEYDFPPFMVLIIAVLNDGTIITISKGRVKSSLRPDGWKLNEIFAAGIVIGNYLALVT 704
LIWE+DF FMVLIIA+LNDGTI+TISK RVK S PD WKL EIFA G+V+G Y A++T
Sbjct: 665 LIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYQAIMT 724
Query: 705 ILFYWVVVHTDFFETHFHVRSLSSNTEEISSAVHLQVSIISQALIFVTRSQSWSFLERPG 764
++F+W TDFF F VRS+ N E+ AV+LQVSIISQALIFVTRS+SWSF+ERPG
Sbjct: 725 VIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQALIFVTRSRSWSFVERPG 784
Query: 765 ALLMCAFVLAQLVATLIAVYAHISFAYISGIGWGWAGVIWLYSLVFYILLDIIKFTVR-T 823
ALLM AF++AQL+ATLIAVYA+ FA I GIGWGWAGVIWLYS+V Y LD+ KF +R
Sbjct: 785 ALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIRYI 844
Query: 824 LSREAW 829
LS +AW
Sbjct: 845 LSGKAW 850
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 262/827 (31%), Positives = 414/827 (50%), Gaps = 70/827 (8%)
Query: 37 TRQGLSSEDAEVRLKFFGSNKLEKKPENKFLKFLSFMWNPLSWVMETAALMAIALANGGG 96
TR GL+SE+ R + +G N+++++ EN FLKFL F P+ +VME AA++A L
Sbjct: 84 TRVGLTSEEVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLE---- 139
Query: 97 QGPDWQDSVGIVC-LLXXXXXXXXXXXXXXXXATAALMAHLTPKTKVLRDGQWKEQDAAV 155
DW D G++C LL L L K VLRDG KE +A
Sbjct: 140 ---DWVD-FGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPE 195
Query: 156 LVPGDIISIKFGDVIPADARLLEGDP-LKIDQSELTGESLTVTKETGDEVFSG------- 207
+VPGDI+ ++ G +IPAD R++ D L++DQS LTGESL V K GD+VF+
Sbjct: 196 VVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGE 255
Query: 208 ----LTCKHVHSFFGKAADLVDSTEV-VGHFQQVLTSIGNFCICFITVGMILEIIVMF-- 260
+T ++F G+AA LV++ GHF +VL IG + + +++ + F
Sbjct: 256 AFVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSFYR 315
Query: 261 --PIQHRL-YRDRINMLSV----------TLAIASYRLSQRGAITKRMTAIEEMARMDVL 307
PI L + I ++ V T+A+ + L+++ AI ++++AIE +A +++L
Sbjct: 316 SNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEIL 375
Query: 308 CSVKTAALTLNRLTVDRNLIEVFNRDMDKDILVLLAARASRLENQDAIDAAIINMLADPK 367
CS KT LT N+L++ + V D + +L A + + + DAID A + L
Sbjct: 376 CSDKTGTLTKNKLSL-HDPYTVAGVDPEDLMLTACLAASRKKKGIDAIDKAFLKSLKYYP 434
Query: 368 EARANINE---VHFLPFNPVDKRTAITYTDSEGNWYRASKGAPEQILNMCQEKEEIGGKV 424
A++ +++ + F PF+PV K+ +G KGAP +L +E I +V
Sbjct: 435 RAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDHPIPEEV 494
Query: 425 HEII-NKLAE---KGLRSLAVAVQEVPEMTEDSPGGPRSFCGLLPLFDPPRHDSSDTIHR 480
+ NK+AE +G RSL VA + G G++P DPPRHD+ T+
Sbjct: 495 DQAYKNKVAEFATRGFRSLGVARKRGE--------GSWEILGIMPCMDPPRHDTYKTVCE 546
Query: 481 ALKLGVCVKMITGDHLAIAKETGRRLGIGTNMYPSSLLLGRDKDENEALPVDELIEKADG 540
A LG+ +KM+TGD + IA+ET R+LG+GTN+Y + L + V + +E ADG
Sbjct: 547 AKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVEAADG 606
Query: 541 FTDVFAEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADXXXXXXXXXXXXXXXXXXVL 600
F +VF +HKY +V+ILQ++ ++V MTGDGVNDAP+LKKAD V
Sbjct: 607 FAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDAARSAADIVF 666
Query: 601 TEPGLSVICSAVLTSRTVFQIMKNCMIHAVSITIHIVLSFVLLALIWEYDFPPFMVLIIA 660
PGL I A+ TSR +F M +++ ++++IH+ + L I +V+ IA
Sbjct: 667 LAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEIFLGLWIAILNRSLNIELVVFIA 726
Query: 661 VLNDGTIITISKGRVKSSLRPDGWKLNEIFAAGIVIGNYLALVTILFYWVVVHTDFFETH 720
+ D + I+ S P W L +++ +++G LA+ T W+ V T + +
Sbjct: 727 IFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVLLGVVLAVGT----WITVTTMYAQGE 782
Query: 721 FHVRSLSSNTEEISSAVHLQVSIISQALIFVTRSQSWSFLERPGALLMCAFVLAQLVATL 780
+ N + + LQ+S+ LIF+TR+ + P L A L ++AT
Sbjct: 783 NG--GIVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSSIPSWQLSGAIFLVDILATC 840
Query: 781 IAVYAHISFAYISGIGWGWAGVIWLYSL--------VFYILLDIIKF 819
++ + S + IW++S V+YIL D + F
Sbjct: 841 FTIWGWFEHSDTSIVA---VVRIWIFSFGIFCIMGGVYYILQDSVGF 884
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 178/774 (22%), Positives = 304/774 (39%), Gaps = 136/774 (17%)
Query: 20 IDLARLPLDEVFGQLGTT-RQGLSSEDAEVRLKFFGSNKLEKKPEN----KFLKFLSFMW 74
+D +L LDE+ + GT +GL+ A L G N L P KF + L +
Sbjct: 10 MDDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGF 69
Query: 75 NPLSWVMETAALMAIALANGGGQGPDWQDSVGIVCLLXXXXXXXXXXXXXXXXATAALM- 133
+ L W+ +A + + P D++ + +L ++ +M
Sbjct: 70 SMLLWIGAILCFLAYGIQAATEEEPQ-NDNLYLGVVLSAVVIITGCFSYYQEAKSSKIME 128
Query: 134 --AHLTPKTK-VLRDGQWKEQDAAVLVPGDIISIKFGDVIPADARLLEGDPLKIDQSELT 190
++ P+ V+R+G+ +A +V GD++ +K GD IPAD R++ + K+D S LT
Sbjct: 129 SFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLT 188
Query: 191 GESLTVTK----------ETGDEVFSGLTCKHV-----------HSFFGKAADLVDSTE- 228
GES T+ ET + F C + G+ A L E
Sbjct: 189 GESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEG 248
Query: 229 -------VVGHFQQVLTSIGNFC-ICFITVGMILE-------IIVMFPIQHRLYRDRINM 273
+ HF ++T + F + F + +ILE I ++ I + +
Sbjct: 249 GQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLAT 308
Query: 274 LSVTLAIASYRLSQRGAITKRMTAIEEMARMDVLCSVKTAALTLNRLTV-----DRNLIE 328
++V L + + R++++ + K + A+E + +CS KT LT NR+TV D + E
Sbjct: 309 VTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIHE 368
Query: 329 VFNRD------MDKDILVLLA--------ARASRLENQ------------DAIDAAIINM 362
+ DK LA RA NQ DA ++A++
Sbjct: 369 ADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKC 428
Query: 363 L----ADPKEARANINEVHFLPFNPVDKRTAITYTD---SEGNWYRASKGAPEQILNMCQ 415
+ KE R ++ +PFN +K + + +E KGAPE+IL+ C
Sbjct: 429 IELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCS 488
Query: 416 E----------KEEIGGKVHEIINKLAEKGLRSLAVAVQEVPEMTEDSPGGPR------- 458
EE+ +L G R L +P+ E P G +
Sbjct: 489 SILIHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPD--EQFPEGFQFDTDDVN 546
Query: 459 ------SFCGLLPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKETGRRLGI---- 508
F GL+ + DPPR D + + G+ V M+TGDH AK + +GI
Sbjct: 547 FPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEG 606
Query: 509 --------------GTNMYP----SSLLLGRDKDENEALPVDELIEKADG--FTDVFAEH 548
+ + P + ++ G D + + +D++++ F +
Sbjct: 607 NETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQ 666
Query: 549 KYEIVKILQEKKHVVGMTGDGVNDAPALKKADX-XXXXXXXXXXXXXXXXXVLTEPGLSV 607
K IV+ Q + +V +TGDGVND+PA KKAD +L + +
Sbjct: 667 KLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFAS 726
Query: 608 ICSAVLTSRTVFQIMKNCMIHAVSITIHIVLSFVLLALIWEYDFPPFMVLIIAV 661
I + V R +F +K + + ++ I + F L+ +I P V I+ +
Sbjct: 727 IVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPF-LIFIIANIPLPLGTVTILCI 779
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 179/772 (23%), Positives = 306/772 (39%), Gaps = 132/772 (17%)
Query: 20 IDLARLPLDEVFGQLGTT-RQGLSSEDAEVRLKFFGSNKLEKKPEN----KFLKFLSFMW 74
+D +L LDE+ + GT +GL+ A L G N L P KF + L +
Sbjct: 16 MDDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGF 75
Query: 75 NPLSWVMETAALMAIALANGGGQGPDWQDSVGIVCLLXXXXXXXXXXXXXXXXATAALM- 133
+ L W+ +A + + P D++ + +L ++ +M
Sbjct: 76 SMLLWIGAILCFLAYGIQAATEEEPQ-NDNLYLGVVLSAVVIITGCFSYYQEAKSSKIME 134
Query: 134 --AHLTPKTK-VLRDGQWKEQDAAVLVPGDIISIKFGDVIPADARLLEGDPLKIDQSELT 190
++ P+ V+R+G+ +A +V GD++ +K GD IPAD R++ + K+D S LT
Sbjct: 135 SFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLT 194
Query: 191 GESLTVTK----------ETGDEVFSGLTCKHV-----------HSFFGKAADLVDSTE- 228
GES T+ ET + F C + G+ A L E
Sbjct: 195 GESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEG 254
Query: 229 -------VVGHFQQVLTSIGNFC-ICFITVGMILE-------IIVMFPIQHRLYRDRINM 273
+ HF ++T + F + F + +ILE I ++ I + +
Sbjct: 255 GQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLAT 314
Query: 274 LSVTLAIASYRLSQRGAITKRMTAIEEMARMDVLCSVKTAALTLNRLTV-----DRNLIE 328
++V L + + R++++ + K + A+E + +CS KT LT NR+TV D + E
Sbjct: 315 VTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHE 374
Query: 329 VFNRD------MDKDILVLLA--------ARASRLENQ------------DAIDAAIINM 362
+ DK LA RA NQ DA ++A++
Sbjct: 375 ADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKC 434
Query: 363 L----ADPKEARANINEVHFLPFNPVDKRTAITYTD---SEGNWYRASKGAPEQILNMCQ 415
+ KE R ++ +PFN +K + + +E KGAPE+IL+ C
Sbjct: 435 IELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCS 494
Query: 416 E----------KEEIGGKVHEIINKLAEKGLRSLA-----VAVQEVPEM----TEDS--P 454
EE+ +L G R L + ++ PE T+D P
Sbjct: 495 SILIHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFP 554
Query: 455 GGPRSFCGLLPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKETGRRLGI------ 508
F GL+ + DPPR D + + G+ V M+TGDH AK + +GI
Sbjct: 555 LDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNE 614
Query: 509 ------------GTNMYP----SSLLLGRDKDENEALPVDELIEKADG--FTDVFAEHKY 550
+ + P + ++ G D + + +D++++ F + K
Sbjct: 615 TVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKL 674
Query: 551 EIVKILQEKKHVVGMTGDGVNDAPALKKADX-XXXXXXXXXXXXXXXXXVLTEPGLSVIC 609
IV+ Q + +V +TGDGVND+PA KKAD +L + + I
Sbjct: 675 IIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIV 734
Query: 610 SAVLTSRTVFQIMKNCMIHAVSITIHIVLSFVLLALIWEYDFPPFMVLIIAV 661
+ V R +F +K + + ++ I + F L+ +I P V I+ +
Sbjct: 735 TGVEEGRLIFDNLKKSIAYTLTSNIPEITPF-LIFIIANIPLPLGTVTILCI 785
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 178/772 (23%), Positives = 301/772 (38%), Gaps = 132/772 (17%)
Query: 20 IDLARLPLDEVFGQLGTT-RQGLSSEDAEVRLKFFGSNKLEKKPEN----KFLKFLSFMW 74
+D +L LDE+ + GT +GL++ A+ L G N L P KF + L +
Sbjct: 46 MDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGF 105
Query: 75 NPLSWVMETAALMAIALANGGGQGPDWQDSVGIVCLLXXXXXXXXXXXXXXXXATAALM- 133
+ L W+ +A + P D++ + +L ++ +M
Sbjct: 106 SILLWIGAILCFLAYGIQAATEDEPA-NDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMD 164
Query: 134 --AHLTPKTK-VLRDGQWKEQDAAVLVPGDIISIKFGDVIPADARLLEGDPLKIDQSELT 190
++ P+ V+RDG+ +A +V GD++ +K GD IPAD R++ K+D S LT
Sbjct: 165 SFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLT 224
Query: 191 GESLTVTK----------ETGDEVFSGLTCKHV-----------HSFFGKAADLVDSTEV 229
GES T+ ET + F C + G+ A L EV
Sbjct: 225 GESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIATLASGLEV 284
Query: 230 --------VGHFQQVLTSIGNFC-ICFITVGMILE-------IIVMFPIQHRLYRDRINM 273
+ HF ++T + F + F + +IL I ++ I + +
Sbjct: 285 GRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGYSWLEAVIFLIGIIVANVPEGLLAT 344
Query: 274 LSVTLAIASYRLSQRGAITKRMTAIEEMARMDVLCSVKTAALTLNRLTV-----DRNLIE 328
++V L + + R++++ + K + A+E + +CS KT LT NR+TV D + E
Sbjct: 345 VTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHE 404
Query: 329 VFNRD------MDK--------DILVLLAARASRLENQDAIDAAIINMLADPKEA----- 369
+ DK + L RA QD + ++ D E+
Sbjct: 405 ADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKC 464
Query: 370 -----------RANINEVHFLPFNPVDKRTAITYTD---SEGNWYRASKGAPEQILNMCQ 415
R ++ +PFN +K + + SE + KGAPE+IL+ C
Sbjct: 465 IELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCS 524
Query: 416 E----------KEEIGGKVHEIINKLAEKGLRSLAVAVQEVPE--------MTEDSPGGP 457
KE++ +L G R L +PE D P P
Sbjct: 525 TILLNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHFALPEDKYNEGYPFDADEPNFP 584
Query: 458 RS---FCGLLPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKETGRRLGIGT---- 510
+ F GL+ + DPPR D + + G+ V M+TGDH AK + +GI +
Sbjct: 585 TTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNE 644
Query: 511 --------------NMYP----SSLLLGRDKDENEALPVDELIEKADG--FTDVFAEHKY 550
+ P + ++ G D + +D+++ F + K
Sbjct: 645 TIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKL 704
Query: 551 EIVKILQEKKHVVGMTGDGVNDAPALKKADX-XXXXXXXXXXXXXXXXXVLTEPGLSVIC 609
IV+ Q + +V +TGDGVND+PALKKAD +L + + I
Sbjct: 705 IIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIV 764
Query: 610 SAVLTSRTVFQIMKNCMIHAVSITIHIVLSFVLLALIWEYDFPPFMVLIIAV 661
+ V R +F +K + + ++ I + F L+ +I P V I+ +
Sbjct: 765 TGVEEGRLIFDNLKKSIAYTLTSNIPEITPF-LVFIIGNVPLPLGTVTILCI 815
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 176/734 (23%), Positives = 279/734 (38%), Gaps = 148/734 (20%)
Query: 39 QGLSSEDAEVRLKFFGSNKLEK---KPEN-KFLKFLSFMWNPLSWVMETAALMAIALANG 94
+GLS+ A L G N L PE KF + L+ L WV AA+ IA A
Sbjct: 71 KGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWV--AAAICLIAFAIQ 128
Query: 95 GGQGPDWQD-----SVGIVCLLXXXXXXXXXXXXXXXXATAALMAHLTPKTKVLRDGQWK 149
+G D ++ ++ ++ A+ + + V+RDG
Sbjct: 129 ASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKF 188
Query: 150 EQDAAVLVPGDIISIKFGDVIPADARLLEGDPLKIDQSELTGESLTVTK----------E 199
+ +A LV GD++ +K GD +PAD R+L+ K+D S LTGES T+ E
Sbjct: 189 QINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLE 248
Query: 200 TGDEVFSGLTCKHV-----------HSFFGKAADLVDSTE--------VVGHFQQVLTSI 240
T + F C + G+ A L E + HF ++ +
Sbjct: 249 TRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGL 308
Query: 241 G-----NFCICFITVGM-ILEIIVMFPIQHRLY--RDRINMLSVTLAIASYRLSQRGAIT 292
F I + +G L +V F Y + ++V L++ + RL+ + +
Sbjct: 309 AILFGATFFIVAMCIGYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVV 368
Query: 293 KRMTAIEEMARMDVLCSVKTAALTLNRLTVDR----NLIEVFNRDMDKD----------- 337
K + A+E + V+CS KT LT NR+TV N I + D+
Sbjct: 369 KNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETW 428
Query: 338 ----ILVLLAARASRLENQDAIDAAIINMLADPKEA----------------RANINEVH 377
++ L RA+ QDA+ ++ D E R +V
Sbjct: 429 RALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVC 488
Query: 378 FLPFNPVDKRTAITYTDSEGNWYR---ASKGAPEQILNMC-------------QEKEEIG 421
+PFN +K +T + R KGAPE++L C ++ E
Sbjct: 489 EIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAF 548
Query: 422 GKVHEIINKLAEK--GLRSLAVAVQEVPE------MTEDSPGGPRSFCGLLPLFDPPRHD 473
+ + L E+ G L ++ ++ P + P SF GL+ + DPPR
Sbjct: 549 QTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRAT 608
Query: 474 SSDTIHRALKLGVCVKMITGDHLAIAKETGRRLGIGTNMYPSSLLLGRDKDENEA----L 529
D + + G+ V M+TGDH AK +GI + G + E+ A +
Sbjct: 609 VPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISE--------GSETVEDIAARLRV 660
Query: 530 PVD-----------------------ELIEKADGFTD-VFA----EHKYEIVKILQEKKH 561
PVD EL+E + VFA + K IV+ Q
Sbjct: 661 PVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGA 720
Query: 562 VVGMTGDGVNDAPALKKADX-XXXXXXXXXXXXXXXXXVLTEPGLSVICSAVLTSRTVFQ 620
+V +TGDGVND+PALKKAD +L + + I + V R +F
Sbjct: 721 IVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFD 780
Query: 621 IMKNCMIHAVSITI 634
+K + + ++ I
Sbjct: 781 NLKKSIAYTLTKNI 794
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 129/287 (44%), Gaps = 25/287 (8%)
Query: 404 KGAPEQILNMCQ------EKEEIGGKVHE-IINKLAEKG-----LRSLAVAVQEVP---- 447
KGAPE +++ C + + G V E I++ + E G LR LA+A ++ P
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 448 EMTEDSPG------GPRSFCGLLPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKE 501
EM D +F G++ + DPPR + +I G+ V MITGD+ A
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 502 TGRRLGI-GTNM-YPSSLLLGRDKDENEALPVDELIEKADGFTDVFAEHKYEIVKILQEK 559
RR+GI G N GR+ D+ E +A F V HK +IV+ LQ
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSY 694
Query: 560 KHVVGMTGDGVNDAPALKKADXXXXXXXXXXXXXXXXXXVLTEPGLSVICSAVLTSRTVF 619
+ MTGDGVNDAPALKKA+ VL + S I +AV R ++
Sbjct: 695 DEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 754
Query: 620 QIMKNCMIHAVSITI-HIVLSFVLLALIWEYDFPPFMVLIIAVLNDG 665
MK + + +S + +V F+ AL P +L + ++ DG
Sbjct: 755 NNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 801
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 52/224 (23%)
Query: 156 LVPGDIISIKFGDVIPADARLL--EGDPLKIDQSELTGESLTVTKET------------- 200
+VPGDI+ + GD +PAD R+L + L++DQS LTGES++V K T
Sbjct: 145 IVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK 204
Query: 201 GDEVFSG-----------LTCKHVHSFFGKAADLVDSTEV-VGHFQQVLTSIG---NFCI 245
+ +FSG + V + GK D + +TE QQ L G + I
Sbjct: 205 KNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 264
Query: 246 CFITVGMILEIIVMFP--------IQHRLYRDRIN--------------MLSVTLAIASY 283
I V + L I F I+ +Y +I +++ LA+ +
Sbjct: 265 SLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTR 324
Query: 284 RLSQRGAITKRMTAIEEMARMDVLCSVKTAALTLNRLTVDRNLI 327
R++++ AI + + ++E + V+CS KT LT N+++V + I
Sbjct: 325 RMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFI 368
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 129/287 (44%), Gaps = 25/287 (8%)
Query: 404 KGAPEQILNMCQ------EKEEIGGKVHE-IINKLAEKG-----LRSLAVAVQEVP---- 447
KGAPE +++ C + + G V E I++ + E G LR LA+A ++ P
Sbjct: 516 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 575
Query: 448 EMTEDSPG------GPRSFCGLLPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKE 501
EM D +F G++ + DPPR + +I G+ V MITGD+ A
Sbjct: 576 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 635
Query: 502 TGRRLGI-GTNM-YPSSLLLGRDKDENEALPVDELIEKADGFTDVFAEHKYEIVKILQEK 559
RR+GI G N GR+ D+ E +A F V HK +IV+ LQ
Sbjct: 636 ICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSY 695
Query: 560 KHVVGMTGDGVNDAPALKKADXXXXXXXXXXXXXXXXXXVLTEPGLSVICSAVLTSRTVF 619
+ MTGDGVNDAPALKKA+ VL + S I +AV R ++
Sbjct: 696 DEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 755
Query: 620 QIMKNCMIHAVSITI-HIVLSFVLLALIWEYDFPPFMVLIIAVLNDG 665
MK + + +S + +V F+ AL P +L + ++ DG
Sbjct: 756 NNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 802
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 52/224 (23%)
Query: 156 LVPGDIISIKFGDVIPADARLL--EGDPLKIDQSELTGESLTVTKET------------- 200
+VPGDI+ + GD +PAD R+L + L++DQS LTGES++V K T
Sbjct: 146 IVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK 205
Query: 201 GDEVFSG-----------LTCKHVHSFFGKAADLVDSTEV-VGHFQQVLTSIG---NFCI 245
+ +FSG + V + GK D + +TE QQ L G + I
Sbjct: 206 KNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 265
Query: 246 CFITVGMILEIIVMFP--------IQHRLYRDRIN--------------MLSVTLAIASY 283
I V + L I F I+ +Y +I +++ LA+ +
Sbjct: 266 SLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTR 325
Query: 284 RLSQRGAITKRMTAIEEMARMDVLCSVKTAALTLNRLTVDRNLI 327
R++++ AI + + ++E + V+CS KT LT N+++V + I
Sbjct: 326 RMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 129/287 (44%), Gaps = 25/287 (8%)
Query: 404 KGAPEQILNMCQ------EKEEIGGKVHE-IINKLAEKG-----LRSLAVAVQEVP---- 447
KGAPE +++ C + + G V E I++ + E G LR LA+A ++ P
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 448 EMTEDSPG------GPRSFCGLLPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKE 501
EM D +F G++ + DPPR + +I G+ V MITGD+ A
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 502 TGRRLGI-GTNM-YPSSLLLGRDKDENEALPVDELIEKADGFTDVFAEHKYEIVKILQEK 559
RR+GI G N GR+ D+ E +A F V HK +IV+ LQ
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSY 694
Query: 560 KHVVGMTGDGVNDAPALKKADXXXXXXXXXXXXXXXXXXVLTEPGLSVICSAVLTSRTVF 619
+ MTGDGVNDAPALKKA+ VL + S I +AV R ++
Sbjct: 695 DEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 754
Query: 620 QIMKNCMIHAVSITI-HIVLSFVLLALIWEYDFPPFMVLIIAVLNDG 665
MK + + +S + +V F+ AL P +L + ++ DG
Sbjct: 755 NNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 801
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 52/224 (23%)
Query: 156 LVPGDIISIKFGDVIPADARLL--EGDPLKIDQSELTGESLTVTKET------------- 200
+VPGDI+ + GD +PAD R+L + L++DQS LTGES++V K T
Sbjct: 145 IVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK 204
Query: 201 GDEVFSG-----------LTCKHVHSFFGKAADLVDSTEV-VGHFQQVLTSIG---NFCI 245
+ +FSG + V + GK D + +TE QQ L G + I
Sbjct: 205 KNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 264
Query: 246 CFITVGMILEIIVMFP--------IQHRLYRDRIN--------------MLSVTLAIASY 283
I V + L I F I+ +Y +I +++ LA+ +
Sbjct: 265 SLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTR 324
Query: 284 RLSQRGAITKRMTAIEEMARMDVLCSVKTAALTLNRLTVDRNLI 327
R++++ AI + + ++E + V+CS KT LT N+++V + I
Sbjct: 325 RMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 129/287 (44%), Gaps = 25/287 (8%)
Query: 404 KGAPEQILNMCQ------EKEEIGGKVHE-IINKLAEKG-----LRSLAVAVQEVP---- 447
KGAPE +++ C + + G V E I++ + E G LR LA+A ++ P
Sbjct: 514 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 573
Query: 448 EMTEDSPGG------PRSFCGLLPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKE 501
EM D +F G++ + DPPR + +I G+ V MITGD+ A
Sbjct: 574 EMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 633
Query: 502 TGRRLGI-GTNM-YPSSLLLGRDKDENEALPVDELIEKADGFTDVFAEHKYEIVKILQEK 559
RR+GI G N GR+ D+ E +A F V HK +IV+ LQ
Sbjct: 634 ICRRIGIFGENEDVADRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSF 693
Query: 560 KHVVGMTGDGVNDAPALKKADXXXXXXXXXXXXXXXXXXVLTEPGLSVICSAVLTSRTVF 619
+ MTGDGVNDAPALKKA+ VL + S I +AV R ++
Sbjct: 694 DEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 753
Query: 620 QIMKNCMIHAVSITI-HIVLSFVLLALIWEYDFPPFMVLIIAVLNDG 665
MK + + +S + +V F+ AL P +L + ++ DG
Sbjct: 754 NNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 800
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 52/224 (23%)
Query: 156 LVPGDIISIKFGDVIPADARLL--EGDPLKIDQSELTGESLTVTKET------------- 200
+VPGDI+ + GD +PAD R+L + L++DQS LTGES++V K T
Sbjct: 145 IVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK 204
Query: 201 GDEVFSG-----------LTCKHVHSFFGKAADLVDSTEV-VGHFQQVLTSIG---NFCI 245
+ +FSG + V + GK D + +TE QQ L G + I
Sbjct: 205 KNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 264
Query: 246 CFITVGMILEIIVMFP--------IQHRLYRDRIN--------------MLSVTLAIASY 283
I V + L I F I+ +Y +I +++ LA+ +
Sbjct: 265 SLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTR 324
Query: 284 RLSQRGAITKRMTAIEEMARMDVLCSVKTAALTLNRLTVDRNLI 327
R++++ AI + + ++E + V+CS KT LT N+++V + I
Sbjct: 325 RMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/477 (23%), Positives = 185/477 (38%), Gaps = 94/477 (19%)
Query: 136 LTPKT--KVLRDGQWKEQDAAVLVPGDIISIKFGDVIPADARLLEGDPLKIDQSELTGES 193
L P++ ++ DG +E + GD++ ++ G+ IP D + EG +D+S +TGE
Sbjct: 222 LVPESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEP 280
Query: 194 LTVTKETGDEVFSGLTCKHVHSFFGKA---------ADLV----DSTEVVGHFQQVLTSI 240
+ V KE +V G T SF KA A +V D+ Q++ ++
Sbjct: 281 IPVAKEASAKVI-GATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTV 339
Query: 241 GNFCICFITVGMILEIIV--MFPIQHRLYRDRINMLSV---------------TLAIASY 283
+ + + + +L IV + Q L I +SV ++ +
Sbjct: 340 SGWFVPAVILVAVLSFIVWALLGPQPALSYGLIAAVSVLIIACPCALGLATPMSIMVGVG 399
Query: 284 RLSQRGAITKRMTAIEEMARMDVLCSVKTAALTLNRLTVDRNLIEVFNRDMDKDILVLLA 343
+ +Q G + K A+E M +++ L KT LT + R + + F D
Sbjct: 400 KGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIVTDDFVEDNAL-----AL 454
Query: 344 ARASRLENQDAIDAAIINMLADPKEARANINEVHFLPFNPVDKRTAITYTDSEGNWYRAS 403
A A +++ + AI++ KE ++ V F + + D + A
Sbjct: 455 AAALEHQSEHPLANAIVHA---AKEKGLSLGSVE--AFEAPTGKGVVGQVDGH---HVAI 506
Query: 404 KGAPEQILNMCQEKEEIGGKVHEIINKLAEKGLRSLAVAVQEVPEMTEDSPGGPRSFCGL 463
A + QE + E ++L KG + +AV L
Sbjct: 507 GNA-----RLMQEHGGDNAPLFEKADELRGKGASVMFMAVD-------------GKTVAL 548
Query: 464 LPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKETGRRLGIGTNMYPSSLLLGRDK 523
L + DP + + +TI + G+ + M+TGD A+ LGI K
Sbjct: 549 LVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI-------------KK 595
Query: 524 DENEALPVDELIEKADGFTDVFAEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKAD 580
E +P E K IV L++K +V M GDGVNDAPAL KAD
Sbjct: 596 VVAEIMP----------------EDKSRIVSELKDKGLIVAMAGDGVNDAPALAKAD 636
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 30/120 (25%)
Query: 461 CGLLPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKETGRRLGIGTNMYPSSLLLG 520
G++ L D R +S + I + +G+ M+TGD+ +AK LG+
Sbjct: 136 SGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD----------- 184
Query: 521 RDKDENEALPVDELIEKADGFTDVFAEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKAD 580
D F +V K E VK +Q+ K+V M GDGVNDAPAL +AD
Sbjct: 185 ------------------DYFAEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQAD 225
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 30/120 (25%)
Query: 461 CGLLPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKETGRRLGIGTNMYPSSLLLG 520
G++ L D R +S + I + +G+ M+TGD+ +AK LG+
Sbjct: 136 SGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD----------- 184
Query: 521 RDKDENEALPVDELIEKADGFTDVFAEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKAD 580
D F +V K E VK +Q+ K+V M GDGVNDAPAL +AD
Sbjct: 185 ------------------DYFAEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQAD 225
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 31/193 (16%)
Query: 462 GLLPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKETGRRLGIGTNMYPSSLLLGR 521
G++ + D + + + ++G+ V MITGD+ A+ R L +
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 574
Query: 522 DKDENEALPVDELIEKADGFTDVFAEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADX 581
+L+ +V K E VK LQ K VV GDG+NDAPAL +AD
Sbjct: 575 -----------DLV-----IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADL 617
Query: 582 XXXXXXXXXXXXXXXXXVLTEPGLSVICSAV-LTSRTVFQIMKNCMIHAVSITIHIVLSF 640
VL L + +A+ L+ +T+ +I +N + I I +
Sbjct: 618 GIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVILIPAAA 677
Query: 641 VLLALIWEYDFPP 653
LL I+ F P
Sbjct: 678 GLLYPIFGVVFRP 690
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 142 VLRDGQWKEQDAAVLVPGDIISIKFGDVIPADARLLEGDPLKIDQSELTGESLTVTKETG 201
V+RDG+ + GDI+ ++ G+ IP D ++EG+ +D+S ++GE + V K G
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 273
Query: 202 DEVF 205
DEVF
Sbjct: 274 DEVF 277
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 31/193 (16%)
Query: 462 GLLPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKETGRRLGIGTNMYPSSLLLGR 521
G++ + D + + + ++G+ V MITGD+ A+ R L +
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 496
Query: 522 DKDENEALPVDELIEKADGFTDVFAEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADX 581
+L+ +V K E VK LQ K VV GDG+NDAPAL +AD
Sbjct: 497 -----------DLV-----IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADL 539
Query: 582 XXXXXXXXXXXXXXXXXVLTEPGLSVICSAV-LTSRTVFQIMKNCMIHAVSITIHIVLSF 640
VL L + +A+ L+ +T+ +I +N + I I +
Sbjct: 540 GIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVILIPAAA 599
Query: 641 VLLALIWEYDFPP 653
LL I+ F P
Sbjct: 600 GLLYPIFGVVFRP 612
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 142 VLRDGQWKEQDAAVLVPGDIISIKFGDVIPADARLLEGDPLKIDQSELTGESLTVTKETG 201
V+RDG+ + GDI+ ++ G+ IP D ++EG+ +D+S ++GE + V K G
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 195
Query: 202 DEVF 205
DEVF
Sbjct: 196 DEVF 199
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 62/162 (38%), Gaps = 30/162 (18%)
Query: 462 GLLPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKETGRRLGIGTNMYPSSLLLGR 521
G++ + D + + + ++G+ V MITGD+ A+ R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 522 DKDENEALPVDELIEKADGFTDVFAEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADX 581
+L+ +V K E VK LQ K VV GDG+NDAPAL +AD
Sbjct: 203 -----------DLV-----IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADL 245
Query: 582 XXXXXXXXXXXXXXXXXVLTEPGLSVICSAVLTSRTVFQIMK 623
VL L + +A+ SR +K
Sbjct: 246 GIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 62/162 (38%), Gaps = 30/162 (18%)
Query: 462 GLLPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKETGRRLGIGTNMYPSSLLLGR 521
G++ + D + + + ++G+ V MITGD+ A+ R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 522 DKDENEALPVDELIEKADGFTDVFAEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADX 581
+L+ +V K E VK LQ K VV GDG+NDAPAL +AD
Sbjct: 203 -----------DLV-----IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADL 245
Query: 582 XXXXXXXXXXXXXXXXXVLTEPGLSVICSAVLTSRTVFQIMK 623
VL L + +A+ SR +K
Sbjct: 246 GIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 133 MAHLTPKTKV-LRDGQWKEQDAAVLVPGDIISIKFGDVIPADARLLEGDPLKIDQSELTG 191
+ L KT V +RDG+ + GDI+ ++ G+ IP D ++EG+ +D+S ++G
Sbjct: 6 LVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISG 64
Query: 192 ESLTVTKETGDEVFS 206
E + V K GDEVF
Sbjct: 65 EPVPVLKSKGDEVFG 79
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 128 ATAALMAHLTPKTKVLRDGQWKEQDAAVLVPGDIISIKFGDVIPADARLLEGDPLKIDQS 187
AT A + L +L + Q D ++ GDII + G P D R++EG + +D+S
Sbjct: 17 ATEATIVTLDSDNILLSEEQV---DVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDES 72
Query: 188 ELTGESLTVTKETGDEVFSG 207
+TGE++ V K+ G V +G
Sbjct: 73 LITGEAMPVAKKPGSTVIAG 92
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 30/155 (19%)
Query: 462 GLLPLFDPPRHDSSDTIHRALKLGVCVKMITGDHLAIAKETGRRLGIGTNMYPSSLLLGR 521
G++ + D + + + + G+ V ITGD+ A+ R L +
Sbjct: 136 GIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL------------- 182
Query: 522 DKDENEALPVDELIEKADGFTDVFAEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADX 581
+L+ +V K E VK LQ K VV GDG+NDAPAL +AD
Sbjct: 183 -----------DLV-----IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADL 225
Query: 582 XXXXXXXXXXXXXXXXXVLTEPGLSVICSAVLTSR 616
VL L + +A+ SR
Sbjct: 226 GIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSR 260
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 541 FTDVFAEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKAD 580
+V K E VK LQ K VV GDG+NDAPAL +AD
Sbjct: 65 IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQAD 103
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 379 LPFNPVDKRTAITYTDSEGNWYRASKGAPEQILNMCQEKEEIG----------GKVHEII 428
+PF+ +R ++ ++ + KGA ++ILN+C + G K+ +
Sbjct: 62 IPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVT 121
Query: 429 NKLAEKGLRSLAVAVQEVP 447
+ L +GLR +AVA + +P
Sbjct: 122 DTLNRQGLRVVAVATKYLP 140
>pdb|3EMU|A Chain A, Crystal Structure Of A Leucine Rich Repeat And Phosphatase
Domain Containing Protein From Entamoeba Histolytica
Length = 161
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 508 IGTNMYPSSLLLGRD-----KDENEALPVDELIEKADGFTDVFAEHKYEIVKILQEKKHV 562
I N S LL+G + KD+ + L +D + E+ D I++ +Q K+ V
Sbjct: 31 IHNNNISSILLVGIEVPSLFKDQCDILRLDIVSEEGHQLYDSIPNAIKFIIRSIQRKEGV 90
Query: 563 VGMTGDGVNDAPAL 576
+ ++G GVN APA+
Sbjct: 91 LIISGTGVNKAPAI 104
>pdb|2P1G|A Chain A, Crystal Structure Of A Putative Xylanase From Bacteroides
Fragilis
pdb|2P1G|B Chain B, Crystal Structure Of A Putative Xylanase From Bacteroides
Fragilis
Length = 249
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 381 FNPVDKRTAITYTDSEGNWYRASKGAPEQILNMCQEKEEIGGK-VHEI-INKLAEKGLRS 438
++P ++ +++Y + Y++ K +PE + M + ++ + GK VH + +KL GL
Sbjct: 112 YSPFKQKLSLSYMSTHPELYKSLKNSPENVAQMAKYEKALSGKEVHYLPKDKLEPDGLPW 171
Query: 439 LAVAVQEVPEMTEDSPGGPRSFCGL 463
+ ++ +T ++PG S G+
Sbjct: 172 IKNG--DIIALTTNTPGLDVSHMGI 194
>pdb|2H3H|A Chain A, Crystal Structure Of The Liganded Form Of Thermotoga
Maritima Glucose Binding Protein
pdb|2H3H|B Chain B, Crystal Structure Of The Liganded Form Of Thermotoga
Maritima Glucose Binding Protein
Length = 313
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 477 TIHRALKLGVCVKMITGDHLAIAKETGRRLGIGTNMYPSS---------LLLGRDKD--E 525
TI +AL++G+ V + D + ++GR + IGT+ Y + LL G+ K
Sbjct: 74 TIKKALEMGIPVVTLDTD----SPDSGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIG 129
Query: 526 NEALPVDELIEKADGFTDVFAEHKYEIVKILQEKK 560
+L +++ GF D + + EIV IL +++
Sbjct: 130 TGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDEE 164
>pdb|3C6Q|B Chain B, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
pdb|3C6Q|A Chain A, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
pdb|3C6Q|C Chain C, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
pdb|3C6Q|D Chain D, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
Length = 311
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 477 TIHRALKLGVCVKMITGDHLAIAKETGRRLGIGTNMYPSS---------LLLGRDKD--E 525
TI +AL++G+ V + D + ++GR + IGT+ Y + LL G+ K
Sbjct: 74 TIKKALEMGIPVVTLDTD----SPDSGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIG 129
Query: 526 NEALPVDELIEKADGFTDVFAEHKYEIVKILQE 558
+L +++ GF D + + EIV IL +
Sbjct: 130 TGSLTAMNSLQRIQGFKDAIKDSEIEIVDILND 162
>pdb|2QVC|A Chain A, Crystal Structure Of A Periplasmic Sugar Abc Transporter
From Thermotoga Maritima
pdb|2QVC|B Chain B, Crystal Structure Of A Periplasmic Sugar Abc Transporter
From Thermotoga Maritima
pdb|2QVC|C Chain C, Crystal Structure Of A Periplasmic Sugar Abc Transporter
From Thermotoga Maritima
pdb|2QVC|D Chain D, Crystal Structure Of A Periplasmic Sugar Abc Transporter
From Thermotoga Maritima
Length = 313
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 15/95 (15%)
Query: 477 TIHRALKLGVCVKMITGDHLAIAKETGRRLGIGTNMYPSS---------LLLGRDKD--E 525
TI +AL+ G+ V + D + ++GR + IGT+ Y + LL G+ K
Sbjct: 75 TIKKALEXGIPVVTLDTD----SPDSGRYVYIGTDNYQAGYTAGLIXKELLGGKGKVVIG 130
Query: 526 NEALPVDELIEKADGFTDVFAEHKYEIVKILQEKK 560
+L +++ GF D + + EIV IL +++
Sbjct: 131 TGSLTAXNSLQRIQGFKDAIKDSEIEIVDILNDEE 165
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 141 KVLRDGQWKEQDAAVLVPGDIISIKFGDVIPADARLLE--------------GDPLKIDQ 186
KV +DG+W+ + D+ + + + + RL + GD L+ +Q
Sbjct: 184 KVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQ 243
Query: 187 SELTGESLTVTKETGDEVFSGLTCKHVHSFFGKAADLVD 225
+ E LT D F G + + +F A + D
Sbjct: 244 QGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVAD 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,050,189
Number of Sequences: 62578
Number of extensions: 910785
Number of successful extensions: 2259
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2168
Number of HSP's gapped (non-prelim): 65
length of query: 831
length of database: 14,973,337
effective HSP length: 107
effective length of query: 724
effective length of database: 8,277,491
effective search space: 5992903484
effective search space used: 5992903484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)