Query 003314
Match_columns 831
No_of_seqs 174 out of 261
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 21:09:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00422 glideosome-associated 99.9 3.2E-27 7E-32 259.3 18.3 228 377-649 22-289 (394)
2 cd07378 MPP_ACP5 Homo sapiens 99.9 3E-26 6.4E-31 236.0 17.0 216 382-644 1-238 (277)
3 cd00839 MPP_PAPs purple acid p 99.9 1E-25 2.2E-30 233.6 17.9 222 379-643 2-243 (294)
4 PLN02533 probable purple acid 99.9 7.7E-25 1.7E-29 243.2 19.1 209 378-640 136-361 (427)
5 KOG1378 Purple acid phosphatas 99.9 6.2E-22 1.3E-26 219.5 19.0 217 378-646 144-389 (452)
6 KOG2679 Purple (tartrate-resis 99.8 4.9E-21 1.1E-25 200.5 12.2 225 376-649 38-285 (336)
7 cd07395 MPP_CSTP1 Homo sapiens 99.7 1E-16 2.2E-21 165.1 18.7 178 420-640 47-237 (262)
8 cd07396 MPP_Nbla03831 Homo sap 99.7 8.7E-16 1.9E-20 160.0 17.8 169 422-639 40-246 (267)
9 cd07402 MPP_GpdQ Enterobacter 99.7 1E-15 2.2E-20 154.2 17.1 167 421-639 39-212 (240)
10 PRK11148 cyclic 3',5'-adenosin 99.6 1.4E-14 2.9E-19 151.5 16.5 198 379-639 12-225 (275)
11 cd07401 MPP_TMEM62_N Homo sapi 99.6 9.1E-15 2E-19 152.2 14.1 130 486-624 78-220 (256)
12 cd07399 MPP_YvnB Bacillus subt 99.6 1.9E-14 4.2E-19 146.0 14.2 160 382-619 1-166 (214)
13 cd00842 MPP_ASMase acid sphing 99.6 2.3E-14 4.9E-19 150.5 12.8 166 421-615 67-262 (296)
14 PF00149 Metallophos: Calcineu 99.5 7.1E-15 1.5E-19 130.3 5.7 193 382-614 1-200 (200)
15 cd07393 MPP_DR1119 Deinococcus 99.4 2E-12 4.3E-17 132.7 14.8 121 483-620 71-211 (232)
16 cd08163 MPP_Cdc1 Saccharomyces 99.3 1.2E-11 2.7E-16 129.9 14.8 117 486-620 86-234 (257)
17 cd07383 MPP_Dcr2 Saccharomyces 99.3 8.2E-12 1.8E-16 124.4 11.5 152 381-618 2-180 (199)
18 COG1409 Icc Predicted phosphoh 99.3 3.5E-11 7.6E-16 122.5 15.2 152 421-614 32-193 (301)
19 cd07392 MPP_PAE1087 Pyrobaculu 99.3 3.8E-11 8.3E-16 115.7 13.4 141 422-614 23-173 (188)
20 TIGR03767 P_acnes_RR metalloph 99.2 6.3E-10 1.4E-14 126.1 19.9 126 522-650 291-430 (496)
21 PRK11340 phosphodiesterase Yae 99.2 4.7E-10 1E-14 118.0 17.0 197 379-649 47-262 (271)
22 cd07385 MPP_YkuE_C Bacillus su 99.2 4.6E-10 9.9E-15 112.2 14.0 199 381-649 1-215 (223)
23 TIGR03729 acc_ester putative p 99.1 6.9E-10 1.5E-14 114.0 10.2 63 548-615 149-222 (239)
24 cd07388 MPP_Tt1561 Thermus the 99.0 6.8E-09 1.5E-13 107.8 16.9 175 381-613 4-190 (224)
25 cd07400 MPP_YydB Bacillus subt 98.9 5.4E-09 1.2E-13 98.2 8.9 50 569-619 81-130 (144)
26 cd07404 MPP_MS158 Microscilla 98.8 2.2E-08 4.8E-13 96.7 10.4 52 566-617 97-152 (166)
27 TIGR03768 RPA4764 metallophosp 98.8 5.9E-08 1.3E-12 109.8 13.2 87 524-612 294-409 (492)
28 cd00838 MPP_superfamily metall 98.7 7.1E-08 1.5E-12 85.4 9.2 50 569-619 70-120 (131)
29 cd00840 MPP_Mre11_N Mre11 nucl 98.7 5.7E-08 1.2E-12 96.4 9.3 122 486-617 78-204 (223)
30 COG1408 Predicted phosphohydro 98.5 2.4E-07 5.3E-12 99.4 9.3 143 487-649 108-273 (284)
31 cd07379 MPP_239FB Homo sapiens 98.5 4.3E-07 9.2E-12 85.5 8.9 47 565-614 67-116 (135)
32 cd07384 MPP_Cdc1_like Saccharo 98.1 7.4E-06 1.6E-10 81.5 8.7 35 569-621 119-153 (171)
33 PF09423 PhoD: PhoD-like phosp 98.1 1.7E-05 3.6E-10 89.4 12.2 92 521-614 252-377 (453)
34 cd08166 MPP_Cdc1_like_1 unchar 98.1 9E-06 2E-10 83.5 8.8 43 569-621 112-154 (195)
35 cd08165 MPP_MPPE1 human MPPE1 97.8 7.1E-05 1.5E-09 73.5 7.6 34 569-620 107-140 (156)
36 cd07397 MPP_DevT Myxococcus xa 97.7 0.00056 1.2E-08 72.5 13.9 58 561-618 142-212 (238)
37 cd08164 MPP_Ted1 Saccharomyces 97.7 8.4E-05 1.8E-09 76.4 7.0 32 569-618 129-160 (193)
38 COG2129 Predicted phosphoester 97.6 0.0015 3.2E-08 68.8 15.5 176 381-618 3-191 (226)
39 cd07406 MPP_CG11883_N Drosophi 97.6 0.0014 3E-08 69.0 14.4 112 487-615 73-208 (257)
40 cd07403 MPP_TTHA0053 Thermus t 97.6 0.00026 5.6E-09 67.3 8.2 49 567-618 57-107 (129)
41 PF12850 Metallophos_2: Calcin 97.5 0.00022 4.8E-09 66.9 7.0 60 565-639 80-139 (156)
42 cd00845 MPP_UshA_N_like Escher 97.5 0.0044 9.5E-08 64.0 16.4 117 487-617 72-209 (252)
43 PRK05340 UDP-2,3-diacylglucosa 97.5 0.00079 1.7E-08 69.9 10.7 18 600-617 185-202 (241)
44 cd00841 MPP_YfcE Escherichia c 97.4 0.00057 1.2E-08 65.3 8.8 58 566-639 75-132 (155)
45 TIGR01854 lipid_A_lpxH UDP-2,3 97.4 0.0021 4.6E-08 66.4 12.9 34 600-636 183-216 (231)
46 PF14582 Metallophos_3: Metall 97.4 0.00059 1.3E-08 72.2 8.8 161 422-613 32-217 (255)
47 cd07389 MPP_PhoD Bacillus subt 97.2 0.0017 3.8E-08 65.9 9.9 24 521-544 146-169 (228)
48 cd07410 MPP_CpdB_N Escherichia 97.2 0.0074 1.6E-07 63.8 14.5 123 488-616 86-232 (277)
49 KOG3770 Acid sphingomyelinase 97.2 0.0025 5.5E-08 74.4 11.8 128 486-617 252-408 (577)
50 TIGR00040 yfcE phosphoesterase 97.2 0.0015 3.2E-08 63.3 8.2 14 600-613 104-117 (158)
51 cd07411 MPP_SoxB_N Thermus the 97.2 0.0076 1.7E-07 63.6 14.1 112 489-614 87-219 (264)
52 cd00844 MPP_Dbr1_N Dbr1 RNA la 97.1 0.0076 1.7E-07 64.6 13.8 50 566-618 165-233 (262)
53 KOG1432 Predicted DNA repair e 97.1 0.018 3.8E-07 64.1 16.4 164 421-613 99-310 (379)
54 COG1768 Predicted phosphohydro 97.0 0.0072 1.6E-07 62.3 12.0 63 564-635 157-219 (230)
55 COG0420 SbcD DNA repair exonuc 96.8 0.0034 7.4E-08 69.5 8.4 52 422-501 40-92 (390)
56 PHA02546 47 endonuclease subun 96.6 0.019 4.2E-07 63.1 11.8 13 485-497 77-89 (340)
57 cd07409 MPP_CD73_N CD73 ecto-5 96.4 0.086 1.9E-06 56.5 15.0 116 485-615 83-219 (281)
58 TIGR00583 mre11 DNA repair pro 96.4 0.069 1.5E-06 60.8 14.9 40 567-615 202-241 (405)
59 cd07408 MPP_SA0022_N Staphyloc 96.3 0.092 2E-06 55.3 14.4 123 484-617 70-216 (257)
60 cd07398 MPP_YbbF-LpxH Escheric 96.0 0.005 1.1E-07 61.6 3.4 35 595-636 181-216 (217)
61 COG2908 Uncharacterized protei 95.9 0.018 3.9E-07 61.2 6.9 30 600-636 185-214 (237)
62 cd07394 MPP_Vps29 Homo sapiens 95.7 0.11 2.3E-06 52.5 11.2 16 600-615 104-119 (178)
63 cd07382 MPP_DR1281 Deinococcus 95.6 0.44 9.6E-06 51.2 16.1 171 384-614 2-178 (255)
64 PRK10966 exonuclease subunit S 95.6 0.0088 1.9E-07 67.7 3.4 22 486-507 76-97 (407)
65 cd07425 MPP_Shelphs Shewanella 95.2 0.011 2.4E-07 60.8 2.2 50 420-496 30-79 (208)
66 TIGR00619 sbcd exonuclease Sbc 95.0 0.014 2.9E-07 61.8 2.5 16 486-501 77-92 (253)
67 cd07407 MPP_YHR202W_N Saccharo 94.9 0.61 1.3E-05 50.6 14.7 84 523-614 137-231 (282)
68 PRK09419 bifunctional 2',3'-cy 94.9 0.41 8.8E-06 61.0 15.3 46 564-615 838-883 (1163)
69 cd07412 MPP_YhcR_N Bacillus su 94.3 1.9 4.2E-05 46.5 16.6 52 564-616 191-243 (288)
70 cd07390 MPP_AQ1575 Aquifex aeo 94.0 0.048 1E-06 53.9 3.6 18 420-437 40-57 (168)
71 cd07391 MPP_PF1019 Pyrococcus 94.0 0.045 9.8E-07 54.2 3.3 15 422-436 41-55 (172)
72 PRK04036 DNA polymerase II sma 93.8 0.065 1.4E-06 62.4 4.6 56 379-434 241-296 (504)
73 cd07405 MPP_UshA_N Escherichia 93.7 1.7 3.7E-05 46.9 15.0 50 564-615 173-222 (285)
74 COG0737 UshA 5'-nucleotidase/2 92.7 2 4.3E-05 50.0 14.4 119 489-614 107-247 (517)
75 cd07386 MPP_DNA_pol_II_small_a 92.2 0.13 2.9E-06 53.5 3.8 18 601-618 190-207 (243)
76 PRK09558 ushA bifunctional UDP 91.9 2.4 5.1E-05 49.9 13.8 50 564-615 209-258 (551)
77 cd07380 MPP_CWF19_N Schizosacc 91.9 0.52 1.1E-05 46.9 7.3 48 567-617 70-126 (150)
78 PRK09453 phosphodiesterase; Pr 91.7 0.24 5.1E-06 49.4 4.7 14 422-435 27-40 (182)
79 TIGR01530 nadN NAD pyrophospha 91.1 2.5 5.4E-05 49.9 13.0 112 487-615 84-219 (550)
80 COG3540 PhoD Phosphodiesterase 90.4 0.7 1.5E-05 53.8 7.4 47 379-439 137-185 (522)
81 cd07381 MPP_CapA CapA and rela 89.3 6.2 0.00013 41.1 12.8 132 484-620 77-225 (239)
82 smart00854 PGA_cap Bacterial c 89.2 11 0.00023 39.5 14.5 52 565-621 173-224 (239)
83 cd08162 MPP_PhoA_N Synechococc 88.5 5.5 0.00012 43.9 12.3 38 565-615 208-245 (313)
84 COG4186 Predicted phosphoester 88.3 1.5 3.3E-05 44.8 7.2 44 562-613 104-147 (186)
85 TIGR01390 CycNucDiestase 2',3' 87.3 9.9 0.00022 45.9 14.4 45 565-614 196-240 (626)
86 TIGR00282 metallophosphoestera 87.0 16 0.00035 39.9 14.5 48 554-613 133-180 (266)
87 COG0622 Predicted phosphoester 85.4 4.7 0.0001 41.2 9.0 42 564-613 79-120 (172)
88 cd07424 MPP_PrpA_PrpB PrpA and 84.0 0.9 1.9E-05 46.4 3.2 18 421-438 27-44 (207)
89 TIGR00024 SbcD_rel_arch putati 81.6 1.2 2.6E-05 47.0 3.1 16 422-437 58-73 (225)
90 PRK09420 cpdB bifunctional 2', 80.9 17 0.00037 44.2 12.8 45 565-614 219-263 (649)
91 PHA02239 putative protein phos 80.7 1.1 2.3E-05 47.6 2.3 16 423-438 30-45 (235)
92 KOG3662 Cell division control 77.4 2.1 4.6E-05 49.2 3.6 49 422-496 93-143 (410)
93 COG1407 Predicted ICC-like pho 76.5 1.9 4.1E-05 46.4 2.7 47 422-496 63-109 (235)
94 COG1311 HYS2 Archaeal DNA poly 74.9 2 4.3E-05 50.2 2.5 57 419-496 259-320 (481)
95 PRK00166 apaH diadenosine tetr 74.9 2.4 5.3E-05 46.1 3.1 19 421-439 27-45 (275)
96 PRK09418 bifunctional 2',3'-cy 74.7 45 0.00098 41.7 14.0 47 565-616 245-291 (780)
97 PRK09968 serine/threonine-spec 72.9 2.3 5.1E-05 44.2 2.3 19 421-439 41-59 (218)
98 PF09587 PGA_cap: Bacterial ca 67.8 97 0.0021 32.7 13.0 134 483-621 74-235 (250)
99 cd07422 MPP_ApaH Escherichia c 66.3 5.2 0.00011 43.2 3.2 19 421-439 25-43 (257)
100 PRK09419 bifunctional 2',3'-cy 65.0 55 0.0012 42.5 12.3 48 565-616 235-282 (1163)
101 PF10230 DUF2305: Uncharacteri 62.3 16 0.00035 39.2 6.1 21 485-509 3-23 (266)
102 cd00144 MPP_PPP_family phospho 60.5 6.3 0.00014 39.9 2.5 17 421-437 23-39 (225)
103 cd07387 MPP_PolD2_C PolD2 (DNA 58.0 14 0.00031 40.1 4.7 55 384-438 2-58 (257)
104 PRK11439 pphA serine/threonine 57.4 6.5 0.00014 40.8 2.0 43 383-439 18-61 (218)
105 PRK13625 bis(5'-nucleosyl)-tet 56.2 8.2 0.00018 40.9 2.6 50 383-438 2-52 (245)
106 PRK11907 bifunctional 2',3'-cy 53.3 78 0.0017 39.9 10.5 45 565-614 310-354 (814)
107 cd07423 MPP_PrpE Bacillus subt 52.9 11 0.00023 39.5 2.7 19 421-439 36-54 (234)
108 KOG4419 5' nucleotidase [Nucle 46.9 99 0.0021 37.7 9.5 125 480-617 121-274 (602)
109 cd07413 MPP_PA3087 Pseudomonas 45.8 18 0.00038 37.9 3.0 17 422-438 33-49 (222)
110 PF14362 DUF4407: Domain of un 42.7 37 0.0008 36.9 5.0 98 29-145 8-107 (301)
111 TIGR00668 apaH bis(5'-nucleosy 42.3 16 0.00036 40.2 2.2 19 421-439 27-45 (279)
112 cd07421 MPP_Rhilphs Rhilph pho 31.5 39 0.00084 37.9 3.0 18 422-439 34-51 (304)
113 COG2843 PgsA Putative enzyme o 30.4 1.5E+02 0.0032 34.3 7.4 68 562-642 221-289 (372)
114 cd03231 ABC_CcmA_heme_exporter 30.1 99 0.0021 31.3 5.4 41 535-576 146-186 (201)
115 PF06011 TRP: Transient recept 28.7 5.9E+02 0.013 29.4 11.9 134 660-801 274-420 (438)
116 PF07819 PGAP1: PGAP1-like pro 27.5 2E+02 0.0044 30.3 7.4 80 483-574 3-93 (225)
117 KOG2310 DNA repair exonuclease 26.5 2.9E+02 0.0064 33.7 9.0 21 422-442 52-73 (646)
118 cd03232 ABC_PDR_domain2 The pl 26.1 1.3E+02 0.0028 30.3 5.4 41 535-576 129-169 (192)
119 TIGR02673 FtsE cell division A 26.0 1.1E+02 0.0024 31.0 4.9 41 535-576 158-198 (214)
120 TIGR01189 ccmA heme ABC export 25.5 1.3E+02 0.0029 30.2 5.4 41 535-576 148-188 (198)
121 TIGR02106 cyd_oper_ybgT cyd op 24.9 44 0.00096 25.7 1.4 10 99-108 1-10 (30)
122 PF08173 YbgT_YccB: Membrane b 23.9 48 0.001 25.2 1.4 10 99-108 1-10 (28)
123 PF14008 Metallophos_C: Iron/z 23.7 51 0.0011 28.0 1.8 17 628-644 2-18 (62)
124 PF07717 OB_NTP_bind: Oligonuc 23.6 28 0.0006 32.1 0.1 32 250-281 80-111 (114)
125 PRK13543 cytochrome c biogenes 23.4 1.4E+02 0.0031 30.5 5.2 44 535-579 158-201 (214)
126 cd07390 MPP_AQ1575 Aquifex aeo 23.4 79 0.0017 31.4 3.2 35 565-617 106-140 (168)
127 COG1292 BetT Choline-glycine b 22.9 68 0.0015 38.6 3.1 58 41-98 23-92 (537)
128 TIGR01166 cbiO cobalt transpor 22.9 1.5E+02 0.0032 29.6 5.1 41 535-576 148-188 (190)
129 KOG4489 Uncharacterized conser 22.7 40 0.00086 31.0 0.9 37 233-291 3-40 (87)
130 cd03269 ABC_putative_ATPase Th 21.7 1.4E+02 0.003 30.2 4.7 41 535-576 149-189 (210)
131 cd03262 ABC_HisP_GlnQ_permease 21.5 1.5E+02 0.0033 29.9 4.9 42 535-577 156-197 (213)
132 TIGR01978 sufC FeS assembly AT 21.4 1.4E+02 0.0031 30.8 4.8 25 379-406 24-48 (243)
133 TIGR00960 3a0501s02 Type II (G 21.2 1.6E+02 0.0034 30.0 5.0 41 535-576 159-199 (216)
134 cd03226 ABC_cobalt_CbiO_domain 20.8 1.6E+02 0.0034 29.8 4.9 25 379-406 24-48 (205)
135 cd03225 ABC_cobalt_CbiO_domain 20.5 1.5E+02 0.0032 29.9 4.6 41 535-576 155-195 (211)
136 TIGR03608 L_ocin_972_ABC putat 20.4 1.8E+02 0.0038 29.2 5.1 41 535-576 155-195 (206)
No 1
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.95 E-value=3.2e-27 Score=259.32 Aligned_cols=228 Identities=16% Similarity=0.151 Sum_probs=169.0
Q ss_pred CCCCCeEEEEEeecCCCCCCchHHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCChhhhhcccccchhhhcCC
Q 003314 377 SEKEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQP 456 (831)
Q Consensus 377 ~~~~~~wFd~VgDtGDG~dStYtVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al~~ 456 (831)
..+..+.|..+||.|.|...|++||+.|++.+.+. ++|||+.+||+. ++|.....+.||.+.||..+.+
T Consensus 22 ~~~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~----------~~~FVls~GDNF-~~Gv~sv~Dp~f~~~FE~vY~~ 90 (394)
T PTZ00422 22 SVKAQLRFASLGNWGTGSKQQKLVASYLKQYAKNE----------RVTFLVSPGSNF-PGGVDGLNDPKWKHCFENVYSE 90 (394)
T ss_pred ccCCeEEEEEEecCCCCchhHHHHHHHHHHHHHhC----------CCCEEEECCccc-cCCCCCccchhHHhhHhhhccC
Confidence 45688999999999999999999999999865432 589999999997 7888777888888888887652
Q ss_pred CCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCChHHHHHHhhcc----------------ccCCccccCC
Q 003314 457 PPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHK----------------SWLGGWFMPQ 520 (831)
Q Consensus 457 ~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL~aFlr~F~~r----------------~~lgGW~mpQ 520 (831)
+ + ..+..| ||+++|||||..+.++++...-+. ..-.+|.||.
T Consensus 91 ~-------------s--------~~L~~P-wy~vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~ 148 (394)
T PTZ00422 91 E-------------S--------GDMQIP-FFTVLGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN 148 (394)
T ss_pred c-------------c--------hhhCCC-eEEeCCcccccCCchhhhccccccccccccccccccccccccCCCccCCc
Confidence 1 1 012456 999999999999999988522110 1135799996
Q ss_pred CcceEEEEc----------------CCcEEEEEEecCCCC------CCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCC
Q 003314 521 KKSYFALQL----------------PKGWWVFGLDLALHC------DIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWL 578 (831)
Q Consensus 521 ~~SYFAlrL----------------p~~wWLiGLDtql~g------dID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~ 578 (831)
+ ||.+.. ....-++.+||..-. +....|++|+++.|+.+....+|+||+.|||.|+
T Consensus 149 ~--yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIyS 226 (394)
T PTZ00422 149 Y--WYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYAPKIADYIIVVGDKPIYS 226 (394)
T ss_pred h--hheeeeeeecccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhhccCCCeEEEEecCceee
Confidence 5 886521 112689999997432 2346789999998864344567999999999999
Q ss_pred cccccCccchhhHHHHHHhhh-CCceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCCCC-CccccCCC
Q 003314 579 LDWYFNNVSGKNVKHLICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFL-HPTHVFSN 649 (831)
Q Consensus 579 ~~~~~~~~t~~~l~~Lie~~L-~~RV~LvLAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGAfL-hPTH~~~~ 649 (831)
.+.++++. .+...++++| +++|+++||||+|+|||.+.. | .++|||||||+.. ++++..+.
T Consensus 227 sG~hg~~~---~L~~~L~PLL~ky~VdlYisGHDH~lq~i~~~---g----t~yIvSGaGs~~~~~~~~~~~~ 289 (394)
T PTZ00422 227 SGSSKGDS---YLSYYLLPLLKDAQVDLYISGYDRNMEVLTDE---G----TAHINCGSGGNSGRKSIMKNSK 289 (394)
T ss_pred cCCCCCCH---HHHHHHHHHHHHcCcCEEEEccccceEEecCC---C----ceEEEeCccccccCCCCCCCCC
Confidence 98765432 2444557777 679999999999999998632 2 3799999999643 34444443
No 2
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.94 E-value=3e-26 Score=236.03 Aligned_cols=216 Identities=19% Similarity=0.226 Sum_probs=152.6
Q ss_pred eEEEEEeecCCC-CCCchHHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCC
Q 003314 382 LWFDFMADTGDG-GNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWY 460 (831)
Q Consensus 382 ~wFd~VgDtGDG-~dStYtVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al~~~~~~ 460 (831)
+.|.++||+|.+ .+.+.++++.|++... .+++||+|++||++|++|...++..++.+.|+..+..
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~----------~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~---- 66 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAA----------ELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSA---- 66 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHH----------hcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccc----
Confidence 479999999987 6788899998887542 1358999999999999987666666665666665431
Q ss_pred cccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCChHHHHHHhhccccCCccccCCCcceEEEEcCC-----cEEE
Q 003314 461 KKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPK-----GWWV 535 (831)
Q Consensus 461 ~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL~aFlr~F~~r~~lgGW~mpQ~~SYFAlrLp~-----~wWL 535 (831)
++ .+.| +++||||||+.++..+...+.-.. ..+.|.+|. .||++..+. +++|
T Consensus 67 ------------------~~-~~~P-~~~v~GNHD~~~~~~~~~~~~~~~-~~~~~~~~~--~~y~~~~~~~~~~~~~~~ 123 (277)
T cd07378 67 ------------------PS-LQVP-WYLVLGNHDYSGNVSAQIDYTKRP-NSPRWTMPA--YYYRVSFPFPSSDTTVEF 123 (277)
T ss_pred ------------------hh-hcCC-eEEecCCcccCCCchheeehhccC-CCCCccCcc--hheEEEeecCCCCCEEEE
Confidence 11 2456 999999999987755543332110 123455554 588999873 6999
Q ss_pred EEEecCCC---------------CCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhh-
Q 003314 536 FGLDLALH---------------CDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYL- 599 (831)
Q Consensus 536 iGLDtql~---------------gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L- 599 (831)
++|||+.. +.+..+|++||++.|++ .+++++||++|||.+..+..... ...+..+++++
T Consensus 124 i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~--~~~~~~iv~~H~P~~~~~~~~~~---~~~~~~l~~l~~ 198 (277)
T cd07378 124 IMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAA--STADWKIVVGHHPIYSSGEHGPT---SCLVDRLLPLLK 198 (277)
T ss_pred EEEeChhHcCccccccccccCcchhhHHHHHHHHHHHHHh--cCCCeEEEEeCccceeCCCCCCc---HHHHHHHHHHHH
Confidence 99999753 22457899999999974 33479999999999987643221 11223334444
Q ss_pred CCceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCCCCCcc
Q 003314 600 KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFLHPT 644 (831)
Q Consensus 600 ~~RV~LvLAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGAfLhPT 644 (831)
+++|+++|+||+|.|++..+.. ...++||+|+||+.....
T Consensus 199 ~~~v~~vl~GH~H~~~~~~~~~-----~~~~~i~~G~~~~~~~~~ 238 (277)
T cd07378 199 KYKVDAYLSGHDHNLQHIKDDG-----SGTSFVVSGAGSKARPSV 238 (277)
T ss_pred HcCCCEEEeCCcccceeeecCC-----CCcEEEEeCCCcccCCCC
Confidence 5689999999999999987653 134789999988744433
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.94 E-value=1e-25 Score=233.60 Aligned_cols=222 Identities=18% Similarity=0.244 Sum_probs=146.2
Q ss_pred CCCeEEEEEeecCCC-CCCchHHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCCh--hhhhcccccchhhhcC
Q 003314 379 KEDLWFDFMADTGDG-GNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA--FTYERRLFRPFEYALQ 455 (831)
Q Consensus 379 ~~~~wFd~VgDtGDG-~dStYtVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~--e~Y~~Rf~~PYe~Al~ 455 (831)
++++.|.++||+|.+ .+++.++..+.++ .+++|+|+++||++|..+.. ++++ .|++..+....
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~-------------~~~~d~vl~~GDl~~~~~~~~~~~~~-~~~~~~~~~~~ 67 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKE-------------LGNYDAILHVGDLAYADGYNNGSRWD-TFMRQIEPLAS 67 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhc-------------cCCccEEEEcCchhhhcCCccchhHH-HHHHHHHHHHh
Confidence 578999999999974 4555555555543 13589999999999988764 3333 33333322110
Q ss_pred CCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCChHHHH-HHhhcccc-CCccccCCCcceEEEEcCCcE
Q 003314 456 PPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFM-RFICHKSW-LGGWFMPQKKSYFALQLPKGW 533 (831)
Q Consensus 456 ~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL~aFl-r~F~~r~~-lgGW~mpQ~~SYFAlrLp~~w 533 (831)
..| ++++|||||......... +.+..+.. ...-....+..||+++.++ +
T Consensus 68 ---------------------------~~P-~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~-v 118 (294)
T cd00839 68 ---------------------------YVP-YMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGP-V 118 (294)
T ss_pred ---------------------------cCC-cEEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCC-E
Confidence 235 999999999876533211 10000000 0000111234699999986 8
Q ss_pred EEEEEecCCCC---CCCHHHHHHHHHHHHhhcC-CCCeEEEEecCCCCCcccccCcc-chhhHHHHHHhhh-CCceeEEE
Q 003314 534 WVFGLDLALHC---DIDVYQFKFFAELVKEQVG-ERDSVIIMTHEPNWLLDWYFNNV-SGKNVKHLICDYL-KGRCKLRI 607 (831)
Q Consensus 534 WLiGLDtql~g---dID~~Q~~wFe~ll~~~v~-~~d~VIL~tHeP~w~~~~~~~~~-t~~~l~~Lie~~L-~~RV~LvL 607 (831)
++++||++... .+..+|++||++.|++.-+ ..+|+||++|+|.|..+....+. .....+..+++++ +++|+++|
T Consensus 119 ~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl 198 (294)
T cd00839 119 HFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVL 198 (294)
T ss_pred EEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEE
Confidence 99999998654 5778999999999974222 23689999999999876543321 1122334445555 67999999
Q ss_pred cCccCCCceeeecCCC---------CCcccceEEEecCCCCCCCc
Q 003314 608 AGDMHHYMRHSYVPSD---------GPVYVQHLLVNGCGGAFLHP 643 (831)
Q Consensus 608 AGHiHhYqR~~~~~~~---------G~~~~~~lIVsGGGGAfLhP 643 (831)
+||+|.|+|..|..+. ....++.+||+|+||+.+.+
T Consensus 199 ~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~ 243 (294)
T cd00839 199 SGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGL 243 (294)
T ss_pred EccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCc
Confidence 9999999999875321 11235689999999997764
No 4
>PLN02533 probable purple acid phosphatase
Probab=99.93 E-value=7.7e-25 Score=243.18 Aligned_cols=209 Identities=21% Similarity=0.299 Sum_probs=145.0
Q ss_pred CCCCeEEEEEeecCCCCCCchHHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCChhhhh--cccccchhhhcC
Q 003314 378 EKEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYE--RRLFRPFEYALQ 455 (831)
Q Consensus 378 ~~~~~wFd~VgDtGDG~dStYtVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~e~Y~--~Rf~~PYe~Al~ 455 (831)
.+.++.|.++||+|.+.....+++.+.+ .++|+++++||++|.+.....++ .++++|+..
T Consensus 136 ~~~~~~f~v~GDlG~~~~~~~tl~~i~~---------------~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s--- 197 (427)
T PLN02533 136 SKFPIKFAVSGDLGTSEWTKSTLEHVSK---------------WDYDVFILPGDLSYANFYQPLWDTFGRLVQPLAS--- 197 (427)
T ss_pred CCCCeEEEEEEeCCCCcccHHHHHHHHh---------------cCCCEEEEcCccccccchHHHHHHHHHHhhhHhh---
Confidence 3468999999999987655545544321 25799999999999764322111 112222211
Q ss_pred CCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCCh----HHHHHHhhccccCCccccCCC------cceE
Q 003314 456 PPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL----NTFMRFICHKSWLGGWFMPQK------KSYF 525 (831)
Q Consensus 456 ~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL----~aFlr~F~~r~~lgGW~mpQ~------~SYF 525 (831)
..| ++++|||||..... ..|. .+...|.||.. ..||
T Consensus 198 ---------------------------~~P-~m~~~GNHE~~~~~~~~~~~f~------~y~~rf~mP~~~~g~~~~~yY 243 (427)
T PLN02533 198 ---------------------------QRP-WMVTHGNHELEKIPILHPEKFT------AYNARWRMPFEESGSTSNLYY 243 (427)
T ss_pred ---------------------------cCc-eEEeCccccccccccccCcCcc------chhhcccCCccccCCCCCceE
Confidence 245 99999999985321 1111 11235778753 2499
Q ss_pred EEEcCCcEEEEEEecCCCCCCCHHHHHHHHHHHHhhcC--CCCeEEEEecCCCCCcccccCcc-chhhHHHHHHhhh-CC
Q 003314 526 ALQLPKGWWVFGLDLALHCDIDVYQFKFFAELVKEQVG--ERDSVIIMTHEPNWLLDWYFNNV-SGKNVKHLICDYL-KG 601 (831)
Q Consensus 526 AlrLp~~wWLiGLDtql~gdID~~Q~~wFe~ll~~~v~--~~d~VIL~tHeP~w~~~~~~~~~-t~~~l~~Lie~~L-~~ 601 (831)
+++.+. +++++||+......+.+|++||++.|++ .+ ..+|+|++.|+|.|..+..+... ....+++.+++++ ++
T Consensus 244 Sfd~g~-vhfI~Lds~~~~~~~~~Q~~WLe~dL~~-~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~~ 321 (427)
T PLN02533 244 SFNVYG-VHIIMLGSYTDFEPGSEQYQWLENNLKK-IDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLYKA 321 (427)
T ss_pred EEEECC-EEEEEEeCCccccCchHHHHHHHHHHHh-hcccCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHHHHHh
Confidence 999986 8999999988777788999999999974 33 34689999999999876543322 1223444556666 78
Q ss_pred ceeEEEcCccCCCceeeecCCCC-CcccceEEEecCCCCC
Q 003314 602 RCKLRIAGDMHHYMRHSYVPSDG-PVYVQHLLVNGCGGAF 640 (831)
Q Consensus 602 RV~LvLAGHiHhYqR~~~~~~~G-~~~~~~lIVsGGGGAf 640 (831)
+|+++|+||+|.|+|..|..... ..+++.|||+|+||..
T Consensus 322 ~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~ 361 (427)
T PLN02533 322 RVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNR 361 (427)
T ss_pred CCcEEEecceecccccccccCCccCCCCCEEEEeCCCccc
Confidence 99999999999999998875321 1346789999999964
No 5
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=6.2e-22 Score=219.45 Aligned_cols=217 Identities=17% Similarity=0.231 Sum_probs=160.2
Q ss_pred CCCCeEEEEEeecCCCCCCchHHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCChh-hhh--cccccchhhhc
Q 003314 378 EKEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAF-TYE--RRLFRPFEYAL 454 (831)
Q Consensus 378 ~~~~~wFd~VgDtGDG~dStYtVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~e-~Y~--~Rf~~PYe~Al 454 (831)
++.+..|.+.||+|....++-+....++.+ .+|++++.||++|..+... ..+ .|+++|..+
T Consensus 144 ~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~--------------k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As-- 207 (452)
T KOG1378|consen 144 QDSPTRAAIFGDMGCTEPYTSTLRNQEENL--------------KPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIAS-- 207 (452)
T ss_pred ccCceeEEEEccccccccccchHhHHhccc--------------CCcEEEEecchhhcCCCCccchHHHHhhhhhhhc--
Confidence 458899999999999988887777766543 4799999999999987652 333 567777754
Q ss_pred CCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCChHHHHHHhhccccCCccccCCCcc------eEEEE
Q 003314 455 QPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKS------YFALQ 528 (831)
Q Consensus 455 ~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL~aFlr~F~~r~~lgGW~mpQ~~S------YFAlr 528 (831)
..| ++++.||||.--..+. |-.....+|.||.+.+ ||+++
T Consensus 208 ----------------------------~vP-ymv~~GNHE~d~~~~~-----~F~~y~~Rf~mP~~~s~s~~~l~YSfd 253 (452)
T KOG1378|consen 208 ----------------------------YVP-YMVCSGNHEIDWPPQP-----CFVPYSARFNMPGNSSESDSNLYYSFD 253 (452)
T ss_pred ----------------------------cCc-eEEecccccccCCCcc-----cccccceeeccCCCcCCCCCceeEEEe
Confidence 346 9999999986321111 2223345688986654 99999
Q ss_pred cCCcEEEEEEecCCCCC--CCHHHHHHHHHHHHhhcCC--CCeEEEEecCCCCCcccc-cCcc-chhhHHHHHHhhh-CC
Q 003314 529 LPKGWWVFGLDLALHCD--IDVYQFKFFAELVKEQVGE--RDSVIIMTHEPNWLLDWY-FNNV-SGKNVKHLICDYL-KG 601 (831)
Q Consensus 529 Lp~~wWLiGLDtql~gd--ID~~Q~~wFe~ll~~~v~~--~d~VIL~tHeP~w~~~~~-~~~~-t~~~l~~Lie~~L-~~ 601 (831)
++. +++++|+|..... ...+|++||++.|+ +++. ++|+|++.|.|.|.++.. +..+ .....++-+|++| ++
T Consensus 254 ~G~-vhfv~lsse~~~~~~~~~~QY~WL~~dL~-~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~ 331 (452)
T KOG1378|consen 254 VGG-VHFVVLSTETYYNFLKGTAQYQWLERDLA-SVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKY 331 (452)
T ss_pred ecc-EEEEEEeccccccccccchHHHHHHHHHH-HhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHh
Confidence 997 7999999987643 34689999999996 4665 589999999999999862 2221 1123334457777 89
Q ss_pred ceeEEEcCccCCCceeeecCCC------C-----CcccceEEEecCCCC--CCCcccc
Q 003314 602 RCKLRIAGDMHHYMRHSYVPSD------G-----PVYVQHLLVNGCGGA--FLHPTHV 646 (831)
Q Consensus 602 RV~LvLAGHiHhYqR~~~~~~~------G-----~~~~~~lIVsGGGGA--fLhPTH~ 646 (831)
+||++|+||.|.|+|..|.... | ...+|.+|+.|+||+ -+.|...
T Consensus 332 ~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~~ 389 (452)
T KOG1378|consen 332 KVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHLDPFSS 389 (452)
T ss_pred ceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCcccccCcccC
Confidence 9999999999999999887541 2 245789999999994 5555543
No 6
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.9e-21 Score=200.52 Aligned_cols=225 Identities=19% Similarity=0.221 Sum_probs=158.3
Q ss_pred cCCCCCeEEEEEeecC-CCCCCchHHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCChhhhhcccccchhhhc
Q 003314 376 LSEKEDLWFDFMADTG-DGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYAL 454 (831)
Q Consensus 376 ~~~~~~~wFd~VgDtG-DG~dStYtVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al 454 (831)
..+++.+.|.+|||+| .|.-.|-+||..|+.-..+. ..|||+-+||+.|-+|-...++.||.+.|+..+
T Consensus 38 ~~~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~l----------~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIY 107 (336)
T KOG2679|consen 38 AKSDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKL----------DIDFVLSTGDNFYDTGLTSENDPRFQDSFENIY 107 (336)
T ss_pred CCCCCceEEEEEcccccCCchhHHHHHHHHHhHHHhc----------cceEEEecCCcccccCCCCCCChhHHhhhhhcc
Confidence 3467899999999999 56668888999888654333 479999999999999999999999999999987
Q ss_pred CCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCChHHHHHHhhccccCCccccCCCcceEEEEcCCcEE
Q 003314 455 QPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWW 534 (831)
Q Consensus 455 ~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL~aFlr~F~~r~~lgGW~mpQ~~SYFAlrLp~~wW 534 (831)
.. |+| +.| ||.|.||||+..+.+|++.-...+. -.+|.-| +|||... .. .=
T Consensus 108 T~-------------pSL----------Qkp-Wy~vlGNHDyrGnV~AQls~~l~~~-d~RW~c~--rsf~~~a-e~-ve 158 (336)
T KOG2679|consen 108 TA-------------PSL----------QKP-WYSVLGNHDYRGNVEAQLSPVLRKI-DKRWICP--RSFYVDA-EI-VE 158 (336)
T ss_pred cC-------------ccc----------ccc-hhhhccCccccCchhhhhhHHHHhh-ccceecc--cHHhhcc-ee-ee
Confidence 63 343 346 9999999999999999988332211 1134433 4454332 11 12
Q ss_pred EEEEecCCC---------CCC------------CHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHH
Q 003314 535 VFGLDLALH---------CDI------------DVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKH 593 (831)
Q Consensus 535 LiGLDtql~---------gdI------------D~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~ 593 (831)
+++.|+..- +++ -+.|+.||+..+++ ...+|+||+.|||.|+.+.|+.. +.+++
T Consensus 159 ~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~--S~a~wkiVvGHh~i~S~~~HG~T---~eL~~ 233 (336)
T KOG2679|consen 159 MFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVALKA--SRAKWKIVVGHHPIKSAGHHGPT---KELEK 233 (336)
T ss_pred eeccccccchhhheecccccccccccCChHHHHHHHHHHHHHHHHHH--hhcceEEEecccceehhhccCCh---HHHHH
Confidence 333333221 111 13678899998875 45679999999999998866442 22333
Q ss_pred HHHhhh-CCceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCCCCCccccCCC
Q 003314 594 LICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFLHPTHVFSN 649 (831)
Q Consensus 594 Lie~~L-~~RV~LvLAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGAfLhPTH~~~~ 649 (831)
.+.++| ..+|+++++||.|..|...-.. ++.+++|||||.--=..|+..|+
T Consensus 234 ~LlPiL~~n~VdlY~nGHDHcLQhis~~e-----~~iqf~tSGagSkaw~g~~~~~~ 285 (336)
T KOG2679|consen 234 QLLPILEANGVDLYINGHDHCLQHISSPE-----SGIQFVTSGAGSKAWRGTDHNPE 285 (336)
T ss_pred HHHHHHHhcCCcEEEecchhhhhhccCCC-----CCeeEEeeCCcccccCCCccCCc
Confidence 334555 4699999999999998886432 34589999998755555566654
No 7
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.73 E-value=1e-16 Score=165.12 Aligned_cols=178 Identities=20% Similarity=0.235 Sum_probs=110.1
Q ss_pred cCCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCC
Q 003314 420 LPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDG 499 (831)
Q Consensus 420 lPrgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDG 499 (831)
.|.+|+|+++||++..+... ++..+..+.+...++. + ....| +++||||||..+.
T Consensus 47 ~~~pd~ii~~GDl~~~~~~~-~~~~~~~~~~~~~~~~----------------------~-~~~vp-~~~i~GNHD~~~~ 101 (262)
T cd07395 47 NPKPKFVVVCGDLVNAMPGD-ELRERQVSDLKDVLSL----------------------L-DPDIP-LVCVCGNHDVGNT 101 (262)
T ss_pred CCCCCEEEEeCCcCCCCcch-hhHHHHHHHHHHHHhh----------------------c-cCCCc-EEEeCCCCCCCCC
Confidence 35789999999999876543 2322223444444321 0 01234 9999999998533
Q ss_pred h-HHHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEEecCCCC------CCCHHHHHHHHHHHHhhc-CCCCeEEEE
Q 003314 500 L-NTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALHC------DIDVYQFKFFAELVKEQV-GERDSVIIM 571 (831)
Q Consensus 500 L-~aFlr~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLiGLDtql~g------dID~~Q~~wFe~ll~~~v-~~~d~VIL~ 571 (831)
. ...++.|.+. ....||++..++ +++++||++... .+..+|++||++++++.- ..+.++||+
T Consensus 102 ~~~~~~~~f~~~---------~g~~~y~~~~~~-~~~i~lds~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~ 171 (262)
T cd07395 102 PTEESIKDYRDV---------FGDDYFSFWVGG-VFFIVLNSQLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVF 171 (262)
T ss_pred CChhHHHHHHHH---------hCCcceEEEECC-EEEEEeccccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEE
Confidence 1 1111212111 112478888865 899999997532 356789999999997432 245699999
Q ss_pred ecCCCCCcccccCcc----chhhHHHHHHhhh-CCceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCCC
Q 003314 572 THEPNWLLDWYFNNV----SGKNVKHLICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAF 640 (831)
Q Consensus 572 tHeP~w~~~~~~~~~----t~~~l~~Lie~~L-~~RV~LvLAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGAf 640 (831)
+|+|.+..+....+. ...+. ..+.+++ +++|+++|+||+|.+.+.... | .+++++|+.|..
T Consensus 172 ~H~P~~~~~~~~~~~~~~~~~~~~-~~l~~ll~~~~V~~v~~GH~H~~~~~~~~---g----~~~~~~~~~~~~ 237 (262)
T cd07395 172 QHIPWFLEDPDEEDSYFNIPKSVR-KPLLDKFKKAGVKAVFSGHYHRNAGGRYG---G----LEMVVTSAIGAQ 237 (262)
T ss_pred ECcCCccCCCCCCcccCCcCHHHH-HHHHHHHHhcCceEEEECccccCCceEEC---C----EEEEEcCceecc
Confidence 999998654322111 11222 2234444 579999999999987765421 2 267888887763
No 8
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.68 E-value=8.7e-16 Score=159.99 Aligned_cols=169 Identities=18% Similarity=0.152 Sum_probs=105.9
Q ss_pred CccEEEEcccccCCCCCh--hhhhcccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCC
Q 003314 422 RGDVLLIGGDLAYPNPSA--FTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDG 499 (831)
Q Consensus 422 rgdfLVlgGDlvYP~gs~--e~Y~~Rf~~PYe~Al~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDG 499 (831)
++|+||++||++..+... +.|+ ....++ ++...| ++.+|||||+++.
T Consensus 40 ~~d~vv~~GDlv~~~~~~~~~~~~-----~~~~~l-------------------------~~l~~p-~~~v~GNHD~~~~ 88 (267)
T cd07396 40 SLDFVVQLGDIIDGDNARAEEALD-----AVLAIL-------------------------DRLKGP-VHHVLGNHDLYNP 88 (267)
T ss_pred CCCEEEECCCeecCCCchHHHHHH-----HHHHHH-------------------------HhcCCC-EEEecCccccccc
Confidence 389999999999654321 2232 222222 122345 9999999999766
Q ss_pred hHHHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEEecCC----------------------------------CCC
Q 003314 500 LNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLAL----------------------------------HCD 545 (831)
Q Consensus 500 L~aFlr~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLiGLDtql----------------------------------~gd 545 (831)
...... .. ........||++... +|.+++||+.. .+.
T Consensus 89 ~~~~~~---~~-----~~~~~~~~yysf~~~-~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 159 (267)
T cd07396 89 SREYLL---LY-----TLLGLGAPYYSFSPG-GIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGG 159 (267)
T ss_pred cHhhhh---cc-----cccCCCCceEEEecC-CcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCccceeccCc
Confidence 432221 00 111133458999776 69999999953 345
Q ss_pred CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhh-C-CceeEEEcCccCCCceeeecCCC
Q 003314 546 IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYL-K-GRCKLRIAGDMHHYMRHSYVPSD 623 (831)
Q Consensus 546 ID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L-~-~RV~LvLAGHiHhYqR~~~~~~~ 623 (831)
++.+|++||++.+++..+.+.++||++|||.+..... ......+.+.+ .+++ + .+|+++|+||+|.++.... .
T Consensus 160 l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~~-~~~~~~~~~~~-~~ll~~~~~V~~v~~GH~H~~~~~~~---~ 234 (267)
T cd07396 160 IGEEQLQWLRNELQEADANGEKVIIFSHFPLHPESTS-PHGLLWNHEEV-LSILRAYGCVKACISGHDHEGGYAQR---H 234 (267)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCCC-ccccccCHHHH-HHHHHhCCCEEEEEcCCcCCCCcccc---C
Confidence 7789999999999754445578999999999865531 11111122222 3333 3 4899999999998874431 1
Q ss_pred CCcccceEEEecCCCC
Q 003314 624 GPVYVQHLLVNGCGGA 639 (831)
Q Consensus 624 G~~~~~~lIVsGGGGA 639 (831)
+.+++++|+=.-
T Consensus 235 ----gi~~~~~~a~~~ 246 (267)
T cd07396 235 ----GIHFLTLEGMVE 246 (267)
T ss_pred ----CeeEEEechhhc
Confidence 236788777543
No 9
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.68 E-value=1e-15 Score=154.23 Aligned_cols=167 Identities=21% Similarity=0.354 Sum_probs=107.7
Q ss_pred CCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCCh
Q 003314 421 PRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL 500 (831)
Q Consensus 421 PrgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL 500 (831)
+++|+||++||++.. +..++|+. +...+ ++++.| ++.||||||..+.
T Consensus 39 ~~~d~vi~~GDl~~~-~~~~~~~~-----~~~~l-------------------------~~~~~p-~~~v~GNHD~~~~- 85 (240)
T cd07402 39 PRPDLVLVTGDLTDD-GSPESYER-----LRELL-------------------------AALPIP-VYLLPGNHDDRAA- 85 (240)
T ss_pred CCCCEEEECccCCCC-CCHHHHHH-----HHHHH-------------------------hhcCCC-EEEeCCCCCCHHH-
Confidence 578999999999975 44444432 22222 122345 9999999998543
Q ss_pred HHHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEEecCCC----CCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003314 501 NTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH----CDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (831)
Q Consensus 501 ~aFlr~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLiGLDtql~----gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~ 576 (831)
+.+++.... + .....+|+++.+. +.++++|+... +.++..|++||++.+++ .++.++|+++|||+
T Consensus 86 --~~~~~~~~~----~--~~~~~~~~~~~~~-~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~--~~~~~~il~~H~pp 154 (240)
T cd07402 86 --MRAVFPELP----P--APGFVQYVVDLGG-WRLILLDSSVPGQHGGELCAAQLDWLEAALAE--APDKPTLVFLHHPP 154 (240)
T ss_pred --HHHhhcccc----c--cccccceeEecCC-EEEEEEeCCCCCCcCCEECHHHHHHHHHHHHh--CCCCCEEEEECCCC
Confidence 334432211 0 1223467888874 89999998753 34678999999999975 23679999999999
Q ss_pred CCccccc-CccchhhHHHHHHhhh-CC-ceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCC
Q 003314 577 WLLDWYF-NNVSGKNVKHLICDYL-KG-RCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGA 639 (831)
Q Consensus 577 w~~~~~~-~~~t~~~l~~Lie~~L-~~-RV~LvLAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGA 639 (831)
+...... +.....+. ..+.+.+ ++ +++++|+||+|..+..... | .+++++|+.|.
T Consensus 155 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~---g----~~~~~~gs~~~ 212 (240)
T cd07402 155 FPVGIAWMDAIGLRNA-EALAAVLARHPNVRAILCGHVHRPIDGSWG---G----IPLLTAPSTCH 212 (240)
T ss_pred ccCCchhhhhhhCCCH-HHHHHHHhcCCCeeEEEECCcCchHHeEEC---C----EEEEEcCccee
Confidence 7653211 11111122 2233444 55 8999999999987665532 2 36788888775
No 10
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.61 E-value=1.4e-14 Score=151.48 Aligned_cols=198 Identities=20% Similarity=0.319 Sum_probs=112.5
Q ss_pred CCCeEEEEEeecCC---CC------CCchHHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCChhhhhcccccc
Q 003314 379 KEDLWFDFMADTGD---GG------NSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRP 449 (831)
Q Consensus 379 ~~~~wFd~VgDtGD---G~------dStYtVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~e~Y~~Rf~~P 449 (831)
++++.|..++|+== .. +..-...+.+++-. ...+.+|+||++||++- +++.++|+. +
T Consensus 12 ~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~---------~~~~~~D~vvitGDl~~-~~~~~~~~~-~--- 77 (275)
T PRK11148 12 EARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIR---------AQQHEFDLIVATGDLAQ-DHSSEAYQH-F--- 77 (275)
T ss_pred CCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHH---------hhCCCCCEEEECCCCCC-CCCHHHHHH-H---
Confidence 47799999999852 11 11122333332210 01346899999999987 355555543 2
Q ss_pred hhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCChHHHHHHhhccccCCccccCCCcceEEEEc
Q 003314 450 FEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQL 529 (831)
Q Consensus 450 Ye~Al~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL~aFlr~F~~r~~lgGW~mpQ~~SYFAlrL 529 (831)
...+ ++++.| +|+||||||..... .+.+... ++. . .++.+ .
T Consensus 78 -~~~l-------------------------~~l~~P-v~~v~GNHD~~~~~---~~~~~~~----~~~--~--~~~~~-~ 118 (275)
T PRK11148 78 -AEGI-------------------------APLRKP-CVWLPGNHDFQPAM---YSALQDA----GIS--P--AKHVL-I 118 (275)
T ss_pred -HHHH-------------------------hhcCCc-EEEeCCCCCChHHH---HHHHhhc----CCC--c--cceEE-e
Confidence 1222 223446 99999999986543 3333221 121 1 23333 3
Q ss_pred CCcEEEEEEecCC----CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCccccc-CccchhhHHHHHHhhh-CC-c
Q 003314 530 PKGWWVFGLDLAL----HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYF-NNVSGKNVKHLICDYL-KG-R 602 (831)
Q Consensus 530 p~~wWLiGLDtql----~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~-~~~t~~~l~~Lie~~L-~~-R 602 (831)
..+|++++||+.. .+.++..|++||++.+++ . +++++||+.|||+...+..+ +.....+-..+ .+++ ++ +
T Consensus 119 ~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~-~-~~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l-~~ll~~~~~ 195 (275)
T PRK11148 119 GEHWQILLLDSQVFGVPHGELSEYQLEWLERKLAD-A-PERHTLVLLHHHPLPAGCAWLDQHSLRNAHEL-AEVLAKFPN 195 (275)
T ss_pred cCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhh-C-CCCCeEEEEcCCCCCCCcchhhccCCCCHHHH-HHHHhcCCC
Confidence 4459999999975 456788999999999974 2 34455666665444333211 11112223233 3444 44 8
Q ss_pred eeEEEcCccCCCceeeecCCCCCcccceEEEecCCCC
Q 003314 603 CKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGA 639 (831)
Q Consensus 603 V~LvLAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGA 639 (831)
|+++|+||+|........ | ..++++++.+.
T Consensus 196 v~~vl~GH~H~~~~~~~~---g----i~~~~~ps~~~ 225 (275)
T PRK11148 196 VKAILCGHIHQELDLDWN---G----RRLLATPSTCV 225 (275)
T ss_pred ceEEEecccChHHhceEC---C----EEEEEcCCCcC
Confidence 999999999985443211 2 25677666554
No 11
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.60 E-value=9.1e-15 Score=152.21 Aligned_cols=130 Identities=17% Similarity=0.150 Sum_probs=81.3
Q ss_pred eEEEeCCCCCCCCCh--HHHHHHhhccccCCccccCCCcceEEEEc-CCcEEEEEEecCCC----------CCCCHHHHH
Q 003314 486 QCYIIPGNHDWFDGL--NTFMRFICHKSWLGGWFMPQKKSYFALQL-PKGWWVFGLDLALH----------CDIDVYQFK 552 (831)
Q Consensus 486 ~vfAIPGNHDWyDGL--~aFlr~F~~r~~lgGW~mpQ~~SYFAlrL-p~~wWLiGLDtql~----------gdID~~Q~~ 552 (831)
+++.||||||.|+-. +.+.+++.+ + .++.++... ||.... -.++.++|||++.. +.++..|++
T Consensus 78 p~~~v~GNHD~~~~~~~~~~~~~~~~--y-~~~~~~~~~-~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~ 153 (256)
T cd07401 78 KWFDIRGNHDLFNIPSLDSENNYYRK--Y-SATGRDGSF-SFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLD 153 (256)
T ss_pred eEEEeCCCCCcCCCCCccchhhHHHH--h-heecCCCcc-ceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHH
Confidence 399999999997321 122222211 1 122222222 333322 23599999999742 567789999
Q ss_pred HHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceeeecCCCC
Q 003314 553 FFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDG 624 (831)
Q Consensus 553 wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~~~~~~G 624 (831)
|+++.+++ .++.+++||++|+|.+....... .....+..+++ +++|+++||||+|.+++..|....|
T Consensus 154 wL~~~L~~-~~~~~~~IV~~HhP~~~~~~~~~-~~~~~~~~ll~---~~~v~~vl~GH~H~~~~~~p~h~~~ 220 (256)
T cd07401 154 RLEKELEK-STNSNYTIWFGHYPTSTIISPSA-KSSSKFKDLLK---KYNVTAYLCGHLHPLGGLEPVHYAG 220 (256)
T ss_pred HHHHHHHh-cccCCeEEEEEcccchhccCCCc-chhHHHHHHHH---hcCCcEEEeCCccCCCcceeeeecC
Confidence 99998864 44557899999999865432111 11111323333 5689999999999999977775444
No 12
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.58 E-value=1.9e-14 Score=146.00 Aligned_cols=160 Identities=17% Similarity=0.148 Sum_probs=97.3
Q ss_pred eEEEEEeecCCCCCCchHHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCc
Q 003314 382 LWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYK 461 (831)
Q Consensus 382 ~wFd~VgDtGDG~dStYtVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al~~~~~~~ 461 (831)
+.|.+++||--+.+..-...+...+..++. ....++|+++++||++..+...++|+. +.+-++.
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~------~~~~~~d~iv~~GDl~~~~~~~~~~~~-~~~~~~~--------- 64 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDN------AEALNIAFVLHLGDIVDDGDNDAEWEA-ADKAFAR--------- 64 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHH------HHHcCCCEEEECCCccCCCCCHHHHHH-HHHHHHH---------
Confidence 478899999755442222111111111110 112357999999999986554444432 1111111
Q ss_pred ccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCChHHHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEEecC
Q 003314 462 KDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLA 541 (831)
Q Consensus 462 ~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL~aFlr~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLiGLDtq 541 (831)
+++...| ++++||||| .++++|+
T Consensus 65 -----------------l~~~~~p-~~~~~GNHD--------------------------------------~~~~ld~- 87 (214)
T cd07399 65 -----------------LDKAGIP-YSVLAGNHD--------------------------------------LVLALEF- 87 (214)
T ss_pred -----------------HHHcCCc-EEEECCCCc--------------------------------------chhhCCC-
Confidence 1111235 999999999 1344443
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCcc----chhhHHHHHHhhh-CC-ceeEEEcCccCCCc
Q 003314 542 LHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNV----SGKNVKHLICDYL-KG-RCKLRIAGDMHHYM 615 (831)
Q Consensus 542 l~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~----t~~~l~~Lie~~L-~~-RV~LvLAGHiHhYq 615 (831)
.++.+|++||+++|++ .++.++|+++|||.+..+...+.. ...+.+..+++++ ++ +|+++|+||+|.+.
T Consensus 88 ---~~~~~ql~WL~~~L~~--~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~ 162 (214)
T cd07399 88 ---GPRDEVLQWANEVLKK--HPDRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAG 162 (214)
T ss_pred ---CCCHHHHHHHHHHHHH--CCCCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCc
Confidence 3468999999999974 446799999999999765432211 0123334456666 45 79999999999987
Q ss_pred eeee
Q 003314 616 RHSY 619 (831)
Q Consensus 616 R~~~ 619 (831)
+-..
T Consensus 163 ~~~~ 166 (214)
T cd07399 163 RTTL 166 (214)
T ss_pred eEEE
Confidence 7765
No 13
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.56 E-value=2.3e-14 Score=150.45 Aligned_cols=166 Identities=22% Similarity=0.275 Sum_probs=102.1
Q ss_pred CCccEEEEcccccCCCCChhhhh-------cccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCC
Q 003314 421 PRGDVLLIGGDLAYPNPSAFTYE-------RRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGN 493 (831)
Q Consensus 421 PrgdfLVlgGDlvYP~gs~e~Y~-------~Rf~~PYe~Al~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGN 493 (831)
+.+||+|++||++..+...+..+ ..+.+.++..++ ..| +++++||
T Consensus 67 ~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------------~~p-v~~~~GN 118 (296)
T cd00842 67 PKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFP---------------------------DTP-VYPALGN 118 (296)
T ss_pred CCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCC---------------------------CCC-EEEcCCC
Confidence 67899999999999875432222 122222322111 234 9999999
Q ss_pred CCCCCC--------hHHHHHHhhc--cccCC--ccccCCCcceEEEEcCCcEEEEEEecCCC-----------CCCCHHH
Q 003314 494 HDWFDG--------LNTFMRFICH--KSWLG--GWFMPQKKSYFALQLPKGWWVFGLDLALH-----------CDIDVYQ 550 (831)
Q Consensus 494 HDWyDG--------L~aFlr~F~~--r~~lg--GW~mpQ~~SYFAlrLp~~wWLiGLDtql~-----------gdID~~Q 550 (831)
||.+.. .+.+.+.+.. +.|+. +..+-.+..||+..+..++++++|||+.. ......|
T Consensus 119 HD~~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Q 198 (296)
T cd00842 119 HDSYPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQ 198 (296)
T ss_pred CCCCcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHH
Confidence 998753 1111111110 01110 11112345799998766799999999742 1223689
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 003314 551 FKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (831)
Q Consensus 551 ~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYq 615 (831)
++||+++|++..+.+.+|||++|+|.............+....+++++ +..|...|+||+|..+
T Consensus 199 l~WL~~~L~~a~~~~~~v~I~~HiPp~~~~~~~~~~~~~~~~~ii~~y-~~~i~~~~~GH~H~d~ 262 (296)
T cd00842 199 LQWLEDELQEAEQAGEKVWIIGHIPPGVNSYDTLENWSERYLQIINRY-SDTIAGQFFGHTHRDE 262 (296)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeccCCCCcccccchHHHHHHHHHHHHH-HHhhheeeecccccce
Confidence 999999998655566799999999997754321101133445566665 3448899999999643
No 14
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.53 E-value=7.1e-15 Score=130.32 Aligned_cols=193 Identities=17% Similarity=0.203 Sum_probs=95.5
Q ss_pred eEEEEEeecCCCCCCchHHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCc
Q 003314 382 LWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYK 461 (831)
Q Consensus 382 ~wFd~VgDtGDG~dStYtVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al~~~~~~~ 461 (831)
+.|.+++|+.-+.+..........+.. ..+++|+||++||+++.+...+.....+. .....
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~----------~~~~~d~ii~~GD~~~~~~~~~~~~~~~~-~~~~~-------- 61 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIA----------AENKPDFIIFLGDLVDGGNPSEEWRAQFW-FFIRL-------- 61 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHH----------HHTTTSEEEEESTSSSSSSHHHHHHHHHH-HHHHH--------
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHh----------ccCCCCEEEeeccccccccccccchhhhc-cchhh--------
Confidence 578999999866443321122221111 13568999999999998766544444331 01110
Q ss_pred ccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCChHHHHHHhhc-ccc--CC-ccccCCCcceEEEEcCCcEEEEE
Q 003314 462 KDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICH-KSW--LG-GWFMPQKKSYFALQLPKGWWVFG 537 (831)
Q Consensus 462 ~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL~aFlr~F~~-r~~--lg-GW~mpQ~~SYFAlrLp~~wWLiG 537 (831)
.....| ++.++||||++............ ... .. .+...++. ......... +...
T Consensus 62 ------------------~~~~~~-~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~ 120 (200)
T PF00149_consen 62 ------------------LNPKIP-VYFILGNHDYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNN-KVIFDNDNF-WFNS 120 (200)
T ss_dssp ------------------HHTTTT-EEEEE-TTSSHHHHHHHHHHHHHHSSEEECSSEEECTESS-EEEEEETTE-EEEE
T ss_pred ------------------hhcccc-ccccccccccceeccccccccccccccccccccccccCcc-eeeeccccc-cccc
Confidence 011334 99999999997654333222111 100 00 01000110 011222221 2222
Q ss_pred EecCCCCCC-CHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCcc-chhhHHHHHHhhh-CCceeEEEcCccCCC
Q 003314 538 LDLALHCDI-DVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNV-SGKNVKHLICDYL-KGRCKLRIAGDMHHY 614 (831)
Q Consensus 538 LDtql~gdI-D~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~-t~~~l~~Lie~~L-~~RV~LvLAGHiHhY 614 (831)
.+....... ...|..|..........+.+++||++|+|.+......... ........++.++ +++|+++++||+|.|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 121 GNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp HCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ccccccccccccchhcccccccccccccccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 221111111 2233333333333334557799999999999876443211 0112223334444 579999999999976
No 15
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.43 E-value=2e-12 Score=132.72 Aligned_cols=121 Identities=15% Similarity=0.099 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCCCCCC-ChHHHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEEecCCC-----------------C
Q 003314 483 DGPQCYIIPGNHDWFD-GLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH-----------------C 544 (831)
Q Consensus 483 ~gP~vfAIPGNHDWyD-GL~aFlr~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLiGLDtql~-----------------g 544 (831)
..| +|+||||||+|. +.+.+.+.+.. .++....+ .++.++. +.|+|++.... +
T Consensus 71 ~~~-v~~V~GNHD~~~~~~~~~~~~l~~----~~~~~~~n---~~~~~~~-i~i~G~~~~~~~~~~~~~~~~~~~~~~~~ 141 (232)
T cd07393 71 PGT-KVLLKGNHDYWWGSASKLRKALEE----SRLALLFN---NAYIDDD-VAICGTRGWDNPGNPWPPINETLKVEEDE 141 (232)
T ss_pred CCC-eEEEeCCccccCCCHHHHHHHHHh----cCeEEecc---CcEEECC-EEEEEEEeeCCCCCccccccccccchhHH
Confidence 345 899999999864 34444333322 12322212 2344554 88999873211 1
Q ss_pred CCCHHHHHHHHHHHHhhcCC--CCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceeeec
Q 003314 545 DIDVYQFKFFAELVKEQVGE--RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 620 (831)
Q Consensus 545 dID~~Q~~wFe~ll~~~v~~--~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~~~ 620 (831)
.+...|++|+++.+++..+. +.++|+++|+|.+..+. ..+.+..++++ .+++++++||+|.+++..|-
T Consensus 142 ~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~-----~~~~~~~~~~~---~~v~~vl~GH~H~~~~~~~~ 211 (232)
T cd07393 142 KIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENG-----DDSPISKLIEE---YGVDICVYGHLHGVGRDRAI 211 (232)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCC-----CHHHHHHHHHH---cCCCEEEECCCCCCcccccc
Confidence 11246899999998742222 24699999999876542 11222233333 48999999999998876644
No 16
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.34 E-value=1.2e-11 Score=129.95 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=76.3
Q ss_pred eEEEeCCCCCCCCC-------hHHHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEEecCCC-----CCCCHHHHHH
Q 003314 486 QCYIIPGNHDWFDG-------LNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH-----CDIDVYQFKF 553 (831)
Q Consensus 486 ~vfAIPGNHDWyDG-------L~aFlr~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLiGLDtql~-----gdID~~Q~~w 553 (831)
+++.||||||+..+ .+.|.++|.. .++++..++ |.+++||+... +.+...|.+|
T Consensus 86 pv~~VpGNHDig~~~~~~~~~~~rf~~~Fg~-------------~~~~~~~~~-~~fV~Lds~~l~~~~~~~~~~~~~~~ 151 (257)
T cd08163 86 MVESLPGNHDIGFGNGVVLPVRQRFEKYFGP-------------TSRVIDVGN-HTFVILDTISLSNKDDPDVYQPPREF 151 (257)
T ss_pred eEEEeCCCcccCCCCCCCHHHHHHHHHHhCC-------------CceEEEECC-EEEEEEccccccCCcccccchhHHHH
Confidence 49999999997322 2233333331 246777775 89999999642 2355689999
Q ss_pred HHHHHHhhcCCCCeEEEEecCCCCCccccc------Cc--------cchhh-H-----HHHHHhhhCCceeEEEcCccCC
Q 003314 554 FAELVKEQVGERDSVIIMTHEPNWLLDWYF------NN--------VSGKN-V-----KHLICDYLKGRCKLRIAGDMHH 613 (831)
Q Consensus 554 Fe~ll~~~v~~~d~VIL~tHeP~w~~~~~~------~~--------~t~~~-l-----~~Lie~~L~~RV~LvLAGHiHh 613 (831)
+++.+++ .+++.++||++|+|.|-..... .. ...+| + ..+++. -+++++||||+|+
T Consensus 152 l~~~l~~-~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~---~~P~~vfsGhdH~ 227 (257)
T cd08163 152 LHSFSAM-KVKSKPRILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKA---VQPVIAFSGDDHD 227 (257)
T ss_pred HHhhhhc-cCCCCcEEEEeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHh---hCCcEEEecCCCc
Confidence 9998753 4566789999999999764210 00 00111 1 123333 4889999999999
Q ss_pred Cceeeec
Q 003314 614 YMRHSYV 620 (831)
Q Consensus 614 YqR~~~~ 620 (831)
|=.+.-.
T Consensus 228 ~C~~~h~ 234 (257)
T cd08163 228 YCEVVHE 234 (257)
T ss_pred cceeEcc
Confidence 8766533
No 17
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.32 E-value=8.2e-12 Score=124.40 Aligned_cols=152 Identities=18% Similarity=0.134 Sum_probs=94.5
Q ss_pred CeEEEEEeecCCCCCCc------h--HHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCChhhhh---cccccc
Q 003314 381 DLWFDFMADTGDGGNSS------Y--SVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYE---RRLFRP 449 (831)
Q Consensus 381 ~~wFd~VgDtGDG~dSt------Y--tVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~e~Y~---~Rf~~P 449 (831)
++.+..++|+.-|.+.. + ...+.+.+- ++ ..++|++|++||+++.....++.. .+++++
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~ 71 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERV-LD---------AEKPDLVVLTGDLITGENTNDNSTSALDKAVSP 71 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHH-Hh---------hcCCCEEEECCccccCCCCchHHHHHHHHHHHH
Confidence 57788999988655432 1 122222221 11 235799999999999766542122 222222
Q ss_pred hhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCChHHHHHHhhccccCCccccCCCcceEEEEc
Q 003314 450 FEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQL 529 (831)
Q Consensus 450 Ye~Al~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL~aFlr~F~~r~~lgGW~mpQ~~SYFAlrL 529 (831)
.. ....| ++++|||||
T Consensus 72 l~-----------------------------~~~~p-~~~~~GNHD---------------------------------- 87 (199)
T cd07383 72 MI-----------------------------DRKIP-WAATFGNHD---------------------------------- 87 (199)
T ss_pred HH-----------------------------HcCCC-EEEECccCC----------------------------------
Confidence 21 11345 999999999
Q ss_pred CCcEEEEEEecCCCCCCCHHHHHHHHHHHHhhc---CCCCeEEEEecCCCCCcccccC----------c-c-chhhHHHH
Q 003314 530 PKGWWVFGLDLALHCDIDVYQFKFFAELVKEQV---GERDSVIIMTHEPNWLLDWYFN----------N-V-SGKNVKHL 594 (831)
Q Consensus 530 p~~wWLiGLDtql~gdID~~Q~~wFe~ll~~~v---~~~d~VIL~tHeP~w~~~~~~~----------~-~-t~~~l~~L 594 (831)
..+.++..|.+||++.+++.. +...+.++++|||......... + . ...+...+
T Consensus 88 ------------~~g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~ 155 (199)
T cd07383 88 ------------GYDWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGL 155 (199)
T ss_pred ------------CCCCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHH
Confidence 446688999999999987421 3457899999999876532211 1 0 11222334
Q ss_pred HHhhh-CCceeEEEcCccCCCceee
Q 003314 595 ICDYL-KGRCKLRIAGDMHHYMRHS 618 (831)
Q Consensus 595 ie~~L-~~RV~LvLAGHiHhYqR~~ 618 (831)
++.+. ..+|+++++||+|.++...
T Consensus 156 ~~~~~~~~~v~~v~~GH~H~~~~~~ 180 (199)
T cd07383 156 FKALLERGDVKGVFCGHDHGNDFCG 180 (199)
T ss_pred HHHHHHcCCeEEEEeCCCCCcceec
Confidence 44444 4789999999999876543
No 18
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.31 E-value=3.5e-11 Score=122.47 Aligned_cols=152 Identities=21% Similarity=0.320 Sum_probs=94.0
Q ss_pred CCccEEEEcccccCCCCChhhhhcc--cccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCC
Q 003314 421 PRGDVLLIGGDLAYPNPSAFTYERR--LFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFD 498 (831)
Q Consensus 421 PrgdfLVlgGDlvYP~gs~e~Y~~R--f~~PYe~Al~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyD 498 (831)
+++|+||++||++-. |..++|+.. |.+ .. ....| ++++|||||-+.
T Consensus 32 ~~~D~~v~tGDl~~~-~~~~~~~~~~~~l~----~~--------------------------~~~~~-~~~vpGNHD~~~ 79 (301)
T COG1409 32 LKPDLLVVTGDLTND-GEPEEYRRLKELLA----RL--------------------------ELPAP-VIVVPGNHDARV 79 (301)
T ss_pred CCCCEEEEccCcCCC-CCHHHHHHHHHHHh----hc--------------------------cCCCc-eEeeCCCCcCCc
Confidence 467999999999987 777677642 222 00 11345 999999999877
Q ss_pred ChHHHHHHhhccccCCccccCCCcceEEEEcC-CcEEEEEEecCC----CCCCCHHHHHHHHHHHHhhcCC-CCeEEEEe
Q 003314 499 GLNTFMRFICHKSWLGGWFMPQKKSYFALQLP-KGWWVFGLDLAL----HCDIDVYQFKFFAELVKEQVGE-RDSVIIMT 572 (831)
Q Consensus 499 GL~aFlr~F~~r~~lgGW~mpQ~~SYFAlrLp-~~wWLiGLDtql----~gdID~~Q~~wFe~ll~~~v~~-~d~VIL~t 572 (831)
.-........... ..++..... .+|+++++|+.. .+.++..|++|+++.+++.-.. .+.+|++.
T Consensus 80 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~~~~~~v~~~ 149 (301)
T COG1409 80 VNGEAFSDQFFNR----------YAVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPERAKDTVVVLH 149 (301)
T ss_pred hHHHHhhhhhccc----------CcceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccccCceEEEec
Confidence 6433333222111 011111111 459999999975 4678899999999999742111 13778888
Q ss_pred cCCCCCcccccCccchhhHHHHHHhhhCCc--eeEEEcCccCCC
Q 003314 573 HEPNWLLDWYFNNVSGKNVKHLICDYLKGR--CKLRIAGDMHHY 614 (831)
Q Consensus 573 HeP~w~~~~~~~~~t~~~l~~Lie~~L~~R--V~LvLAGHiHhY 614 (831)
|||..+...........+...+........ |+++|+||+|--
T Consensus 150 hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 150 HHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred CCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 998887765544322222222222222334 999999999943
No 19
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.29 E-value=3.8e-11 Score=115.69 Aligned_cols=141 Identities=17% Similarity=0.235 Sum_probs=83.1
Q ss_pred CccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCChH
Q 003314 422 RGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLN 501 (831)
Q Consensus 422 rgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL~ 501 (831)
++|+||++||++.. ++.++|+. + +. ++..+.| +++||||||...-
T Consensus 23 ~~D~vv~~GDl~~~-~~~~~~~~-~----~~--------------------------l~~~~~p-~~~v~GNHD~~~~-- 67 (188)
T cd07392 23 EADAVIVAGDITNF-GGKEAAVE-I----NL--------------------------LLAIGVP-VLAVPGNCDTPEI-- 67 (188)
T ss_pred CCCEEEECCCccCc-CCHHHHHH-H----HH--------------------------HHhcCCC-EEEEcCCCCCHHH--
Confidence 58999999998864 33333321 1 11 1122345 9999999997422
Q ss_pred HHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEEecCC------CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCC
Q 003314 502 TFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLAL------HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEP 575 (831)
Q Consensus 502 aFlr~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLiGLDtql------~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP 575 (831)
.... . .++.....+ .+.++ +|.++|+|+.. .+.....|.+|+ +.+. ..+++.+|+++|+|
T Consensus 68 --~~~~-~----~~~~~~~~~---~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~--~~~~~~~ilv~H~p 133 (188)
T cd07392 68 --LGLL-T----SAGLNLHGK---VVEVG-GYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLN--NLLAKNLILVTHAP 133 (188)
T ss_pred --HHhh-h----cCcEecCCC---EEEEC-CEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhh--ccCCCCeEEEECCC
Confidence 1111 1 112222221 23345 49999998742 234567889998 3332 24567899999999
Q ss_pred CCCc--ccccCc--cchhhHHHHHHhhhCCceeEEEcCccCCC
Q 003314 576 NWLL--DWYFNN--VSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (831)
Q Consensus 576 ~w~~--~~~~~~--~t~~~l~~Lie~~L~~RV~LvLAGHiHhY 614 (831)
++.. +..... ...+.+.++++++ +++++|+||+|.-
T Consensus 134 p~~~~~d~~~~~~~~g~~~l~~li~~~---~~~~~l~GH~H~~ 173 (188)
T cd07392 134 PYGTAVDRVSGGFHVGSKAIRKFIEER---QPLLCICGHIHES 173 (188)
T ss_pred CcCCcccccCCCCccCCHHHHHHHHHh---CCcEEEEeccccc
Confidence 9752 211111 1224455565554 8999999999974
No 20
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.21 E-value=6.3e-10 Score=126.08 Aligned_cols=126 Identities=12% Similarity=0.158 Sum_probs=85.1
Q ss_pred cceEEEE-cCCcEEEEEEecCC-----CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCc-----cchhh
Q 003314 522 KSYFALQ-LPKGWWVFGLDLAL-----HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNN-----VSGKN 590 (831)
Q Consensus 522 ~SYFAlr-Lp~~wWLiGLDtql-----~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~-----~t~~~ 590 (831)
..||+++ .++ |.+|+|||+. .+.++..|++||++.|++ .+++++||++|||.|..+....+ ....+
T Consensus 291 ~~YYSFd~~gg-vrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~--a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n 367 (496)
T TIGR03767 291 TGYYTFDIAGG-VRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRA--SSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHL 367 (496)
T ss_pred CceEEEEeECC-EEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhc--CCCCCEEEEECCCCccccccccccccccccccC
Confidence 3599999 565 9999999975 357899999999999974 45678999999999875432111 11223
Q ss_pred HHHHHHhhhCC-ceeEEEcCccCCCc--eeeecCCCCCcccceEEEecCCCCCCCccccCCCc
Q 003314 591 VKHLICDYLKG-RCKLRIAGDMHHYM--RHSYVPSDGPVYVQHLLVNGCGGAFLHPTHVFSNF 650 (831)
Q Consensus 591 l~~Lie~~L~~-RV~LvLAGHiHhYq--R~~~~~~~G~~~~~~lIVsGGGGAfLhPTH~~~~~ 650 (831)
.+++++-+-++ +|.++|+||+|.-. ++.+.++.+++.+-.-|++++-=-|-||-|.++-.
T Consensus 368 ~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvdfPq~~Ri~Ei~ 430 (496)
T TIGR03767 368 GTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHIDFPQQGRIIELA 430 (496)
T ss_pred HHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccccccCCCCceEEEEE
Confidence 33443333354 79999999999432 22222222232333558888877888888887753
No 21
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.19 E-value=4.7e-10 Score=118.05 Aligned_cols=197 Identities=15% Similarity=0.152 Sum_probs=106.2
Q ss_pred CCCeEEEEEeecCCCCCCchH-HHHHhcccccccccCCCCcccCCccEEEEcccccCCCCChhhhhcccccchhhhcCCC
Q 003314 379 KEDLWFDFMADTGDGGNSSYS-VARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPP 457 (831)
Q Consensus 379 ~~~~wFd~VgDtGDG~dStYt-VArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al~~~ 457 (831)
.+++.+.+++|+=-|.....+ ..+++.+ . ...++|+|+++||++..+ ...+.+ . +...++
T Consensus 47 ~~~~rI~~lSDlH~~~~~~~~~l~~~v~~-i----------~~~~pDlVli~GD~~d~~-~~~~~~-~----~~~~L~-- 107 (271)
T PRK11340 47 AAPFKILFLADLHYSRFVPLSLISDAIAL-G----------IEQKPDLILLGGDYVLFD-MPLNFS-A----FSDVLS-- 107 (271)
T ss_pred CCCcEEEEEcccCCCCcCCHHHHHHHHHH-H----------HhcCCCEEEEccCcCCCC-ccccHH-H----HHHHHH--
Confidence 457999999999876433322 2222221 1 123689999999977522 111111 1 111221
Q ss_pred CCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCChH---HHHHHhhccccCCccccCCCcceEEEEcCC-cE
Q 003314 458 PWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLN---TFMRFICHKSWLGGWFMPQKKSYFALQLPK-GW 533 (831)
Q Consensus 458 ~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL~---aFlr~F~~r~~lgGW~mpQ~~SYFAlrLp~-~w 533 (831)
+++. ..| +|+|+||||++.+.. .+.+. .++ .|+..-++.+. .++.+. ..
T Consensus 108 --------------------~L~~-~~p-v~~V~GNHD~~~~~~~~~~~~~~-l~~---~gi~lL~n~~~-~i~~~~~~i 160 (271)
T PRK11340 108 --------------------PLAE-CAP-TFACFGNHDRPVGTEKNHLIGET-LKS---AGITVLFNQAT-VIATPNRQF 160 (271)
T ss_pred --------------------HHhh-cCC-EEEecCCCCcccCccchHHHHHH-HHh---cCcEEeeCCeE-EEeeCCcEE
Confidence 1111 235 999999999875432 22222 222 35655555433 455443 37
Q ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCC
Q 003314 534 WVFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (831)
Q Consensus 534 WLiGLDtql~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHh 613 (831)
+|+|+|+-..+..+.+ +..++++..|+++|+|..... .-+.+++|.||||+|.
T Consensus 161 ~i~G~~d~~~~~~~~~----------~~~~~~~~~IlL~H~P~~~~~-----------------~~~~~~dL~lsGHTHG 213 (271)
T PRK11340 161 ELVGTGDLWAGQCKPP----------PASEANLPRLVLAHNPDSKEV-----------------MRDEPWDLMLCGHTHG 213 (271)
T ss_pred EEEEecchhccCCChh----------HhcCCCCCeEEEEcCCChhHh-----------------hccCCCCEEEeccccC
Confidence 8999986433222211 112346789999999986321 1134799999999997
Q ss_pred Cceee--------ec----CCCCC--cccceEEEecCCCCCCCccccCCC
Q 003314 614 YMRHS--------YV----PSDGP--VYVQHLLVNGCGGAFLHPTHVFSN 649 (831)
Q Consensus 614 YqR~~--------~~----~~~G~--~~~~~lIVsGGGGAfLhPTH~~~~ 649 (831)
=|-.- +. ...|- ....+++||-|-|.. .|.|...+
T Consensus 214 GQi~lP~~~~~~~~~~~~~~~~G~~~~~~~~l~Vs~G~G~~-~p~R~~~~ 262 (271)
T PRK11340 214 GQLRVPLVGEPFAPVEDKRYVAGLNAFGERQIYTTRGVGSL-YGLRLNCR 262 (271)
T ss_pred CeEEccccCccccccccCcccCCcEEeCCcEEEEeCCccCC-cCCcccCC
Confidence 33221 11 11222 123356666666654 57766543
No 22
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.16 E-value=4.6e-10 Score=112.22 Aligned_cols=199 Identities=19% Similarity=0.189 Sum_probs=110.8
Q ss_pred CeEEEEEeecCCCCCCch-HHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCC
Q 003314 381 DLWFDFMADTGDGGNSSY-SVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPW 459 (831)
Q Consensus 381 ~~wFd~VgDtGDG~dStY-tVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al~~~~~ 459 (831)
++.+.+++|+=-+..... ...+++.+-. ..++|+++++||++....... ..+.+.++.
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~-----------~~~~d~vl~~GD~~~~~~~~~---~~~~~~l~~------- 59 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKIN-----------ALKPDLVVLTGDLVDGSVDVL---ELLLELLKK------- 59 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHh-----------ccCCCEEEEcCcccCCcchhh---HHHHHHHhc-------
Confidence 467889999986654321 2333332210 124789999999988654332 112111111
Q ss_pred CcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCChHHHHHHhhccccCCccccCCCcceEEEEcCC-cEEEEEE
Q 003314 460 YKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPK-GWWVFGL 538 (831)
Q Consensus 460 ~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL~aFlr~F~~r~~lgGW~mpQ~~SYFAlrLp~-~wWLiGL 538 (831)
++ ...| ++++|||||++.+..........+ .++..-.+. +..++... ...+.|+
T Consensus 60 -------------------l~-~~~~-v~~v~GNHD~~~~~~~~~~~~l~~---~~v~~L~~~-~~~~~~~~~~i~i~G~ 114 (223)
T cd07385 60 -------------------LK-APLG-VYAVLGNHDYYSGDEENWIEALES---AGITVLRNE-SVEISVGGATIGIAGV 114 (223)
T ss_pred -------------------cC-CCCC-EEEECCCcccccCchHHHHHHHHH---cCCEEeecC-cEEeccCCeEEEEEec
Confidence 11 1234 999999999987755431222221 234433332 33455443 2567776
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceee
Q 003314 539 DLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 618 (831)
Q Consensus 539 Dtql~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~ 618 (831)
+.... +.+.+.+.++ +.++++..|+++|.|..... .-+.++++++|||+|..|...
T Consensus 115 ~~~~~------~~~~~~~~~~-~~~~~~~~I~l~H~P~~~~~-----------------~~~~~~dl~l~GHtHggqi~~ 170 (223)
T cd07385 115 DDGLG------RRPDLEKALK-GLDEDDPNILLAHQPDTAEE-----------------AAAWGVDLQLSGHTHGGQIRL 170 (223)
T ss_pred cCccc------cCCCHHHHHh-CCCCCCCEEEEecCCChhHH-----------------hcccCccEEEeccCCCCEEec
Confidence 53221 2234455443 34667799999999975322 113589999999999876554
Q ss_pred ecCC------------CCC--cccceEEEecCCCCCCCccccCCC
Q 003314 619 YVPS------------DGP--VYVQHLLVNGCGGAFLHPTHVFSN 649 (831)
Q Consensus 619 ~~~~------------~G~--~~~~~lIVsGGGGAfLhPTH~~~~ 649 (831)
+... +|- ....+++||-|-|...-|.|...+
T Consensus 171 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~Vs~G~G~~~~~~R~~~~ 215 (223)
T cd07385 171 PGIGPLVLSKLARPYDYGLYRKGGSQLYVSRGLGTWGPPLRLGCP 215 (223)
T ss_pred cccccccchhhcCcccceEEEECCEEEEEcCCccCCCCchhcCCC
Confidence 3321 111 112366777777776667666543
No 23
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.05 E-value=6.9e-10 Score=113.97 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEecCCCCCccc-------ccCc----cchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 003314 548 VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDW-------YFNN----VSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (831)
Q Consensus 548 ~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~-------~~~~----~t~~~l~~Lie~~L~~RV~LvLAGHiHhYq 615 (831)
..|++|+++.+++ .+++++||+||||+..... .... .....+.++++++ +++++++||+|.-.
T Consensus 149 ~~~l~~l~~~l~~--~~~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~---~v~~~i~GH~H~~~ 222 (239)
T TIGR03729 149 AIVLKQLKKQLNQ--LDNKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKY---EIKDVIFGHLHRRF 222 (239)
T ss_pred HHHHHHHHHHHHh--cCCCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHh---CCCEEEECCccCCC
Confidence 5789999999864 3456899999998743210 0111 0113344555554 99999999999643
No 24
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.04 E-value=6.8e-09 Score=107.82 Aligned_cols=175 Identities=14% Similarity=0.152 Sum_probs=99.2
Q ss_pred CeEEEEEeecCCCCCCchHHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCC
Q 003314 381 DLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWY 460 (831)
Q Consensus 381 ~~wFd~VgDtGDG~dStYtVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al~~~~~~ 460 (831)
...+..++|+=+ ..-.+.++++.. +..++|++|++||++..++..++|.. +++..
T Consensus 4 ~~kIl~iSDiHg---n~~~le~l~~~~-----------~~~~~D~vv~~GDl~~~g~~~~~~~~-~l~~l---------- 58 (224)
T cd07388 4 VRYVLATSNPKG---DLEALEKLVGLA-----------PETGADAIVLIGNLLPKAAKSEDYAA-FFRIL---------- 58 (224)
T ss_pred eeEEEEEEecCC---CHHHHHHHHHHH-----------hhcCCCEEEECCCCCCCCCCHHHHHH-HHHHH----------
Confidence 345778888853 122333333311 01358999999999998655555543 11111
Q ss_pred cccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCChHHHHH-Hhhcc-ccCCccccCCCcceEEEEcCCcEEEEEE
Q 003314 461 KKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMR-FICHK-SWLGGWFMPQKKSYFALQLPKGWWVFGL 538 (831)
Q Consensus 461 ~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL~aFlr-~F~~r-~~lgGW~mpQ~~SYFAlrLp~~wWLiGL 538 (831)
+....| +++||||||-- +..+++ .+... ..........+ .++...+..|+|+
T Consensus 59 -------------------~~l~~p-v~~V~GNhD~~--v~~~l~~~~~~~~~~p~~~~lh~~----~~~~~g~~~~~Gl 112 (224)
T cd07388 59 -------------------GEAHLP-TFYVPGPQDAP--LWEYLREAYNAELVHPEIRNVHET----FAFWRGPYLVAGV 112 (224)
T ss_pred -------------------HhcCCc-eEEEcCCCChH--HHHHHHHHhcccccCccceecCCC----eEEecCCeEEEEe
Confidence 122335 99999999952 434444 22110 00112333222 2334344789999
Q ss_pred ecCCCC--CCCHHHH----HHHHH----HHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEc
Q 003314 539 DLALHC--DIDVYQF----KFFAE----LVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIA 608 (831)
Q Consensus 539 Dtql~g--dID~~Q~----~wFe~----ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLA 608 (831)
|-.+.. ..+..|. +|+.+ .+.+ . ...+.||++|+|++-.+..| ...+.++++++++ +.++.++
T Consensus 113 GGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~-~-~~~~~VLv~H~PP~g~g~~h--~GS~alr~~I~~~---~P~l~i~ 185 (224)
T cd07388 113 GGEIADEGEPEEHEALRYPAWVAEYRLKALWE-L-KDYRKVFLFHTPPYHKGLNE--QGSHEVAHLIKTH---NPLVVLV 185 (224)
T ss_pred cCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHh-C-CCCCeEEEECCCCCCCCCCc--cCHHHHHHHHHHh---CCCEEEE
Confidence 854422 3344552 45433 3322 2 35689999999999874322 2245577777776 8999999
Q ss_pred CccCC
Q 003314 609 GDMHH 613 (831)
Q Consensus 609 GHiHh 613 (831)
||+||
T Consensus 186 GHih~ 190 (224)
T cd07388 186 GGKGQ 190 (224)
T ss_pred cCCce
Confidence 99993
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.89 E-value=5.4e-09 Score=98.23 Aligned_cols=50 Identities=12% Similarity=-0.027 Sum_probs=31.6
Q ss_pred EEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceeee
Q 003314 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSY 619 (831)
Q Consensus 569 IL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~~ 619 (831)
|+++|||.+........... +.+.+.+-+.+.+++++++||+|.......
T Consensus 81 iv~~Hhp~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~ 130 (144)
T cd07400 81 IVVLHHPLVPPPGSGRERLL-DAGDALKLLAEAGVDLVLHGHKHVPYVGNI 130 (144)
T ss_pred EEEecCCCCCCCccccccCC-CHHHHHHHHHHcCCCEEEECCCCCcCeeec
Confidence 99999999876532221111 233333333356999999999998665543
No 26
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.81 E-value=2.2e-08 Score=96.74 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=31.5
Q ss_pred CeEEEEecCCCCCcccccCcc-chhh--HHHHHHhhh-CCceeEEEcCccCCCcee
Q 003314 566 DSVIIMTHEPNWLLDWYFNNV-SGKN--VKHLICDYL-KGRCKLRIAGDMHHYMRH 617 (831)
Q Consensus 566 d~VIL~tHeP~w~~~~~~~~~-t~~~--l~~Lie~~L-~~RV~LvLAGHiHhYqR~ 617 (831)
+++||++|||+...+....+. ...+ ....+.+.+ +.+|+++++||+|.....
T Consensus 97 ~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~ 152 (166)
T cd07404 97 GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDY 152 (166)
T ss_pred CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceE
Confidence 589999999998764322111 1111 111123333 568999999999975433
No 27
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=98.77 E-value=5.9e-08 Score=109.76 Aligned_cols=87 Identities=18% Similarity=0.145 Sum_probs=56.0
Q ss_pred eEEEEcCCcE--EEEEEecCC-----------CCCCCHHHHHHHHHHHHhhcC-CCCeEEEEecCCCCCc-cccc---C-
Q 003314 524 YFALQLPKGW--WVFGLDLAL-----------HCDIDVYQFKFFAELVKEQVG-ERDSVIIMTHEPNWLL-DWYF---N- 584 (831)
Q Consensus 524 YFAlrLp~~w--WLiGLDtql-----------~gdID~~Q~~wFe~ll~~~v~-~~d~VIL~tHeP~w~~-~~~~---~- 584 (831)
||+++...+| .+|+||+.. ++.+|.+|++||++.|++ .+ .+..||++.|+|..+. .... .
T Consensus 294 yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~-a~a~~p~VVV~hHpPi~t~gi~~md~w~~ 372 (492)
T TIGR03768 294 CYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELAR-GQADGQLMIIAAHIPIAVSPIGSEMEWWL 372 (492)
T ss_pred eeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHh-CcCCCceEEEEeCCCcccCCccchhhhcc
Confidence 9999954335 999999763 345889999999999974 34 4456777788887752 2111 0
Q ss_pred -c-------cchhhHHHHHHhhh-C-CceeEEEcCccC
Q 003314 585 -N-------VSGKNVKHLICDYL-K-GRCKLRIAGDMH 612 (831)
Q Consensus 585 -~-------~t~~~l~~Lie~~L-~-~RV~LvLAGHiH 612 (831)
. +......+| .++| + .+|.++||||+|
T Consensus 373 ~~~~~~~~L~n~~~~~eL-laLL~~hPnVla~LsGHvH 409 (492)
T TIGR03768 373 GAADANPDLQNAVSLTGL-VTTLQKYPNLLMWIAGHRH 409 (492)
T ss_pred ccccccccccccccHHHH-HHHHhcCCCeEEEEcCCcc
Confidence 0 001111122 3333 2 379999999999
No 28
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.71 E-value=7.1e-08 Score=85.37 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=33.3
Q ss_pred EEEecCCCCCcccccCccchhhHHHHHHhhh-CCceeEEEcCccCCCceeee
Q 003314 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYL-KGRCKLRIAGDMHHYMRHSY 619 (831)
Q Consensus 569 IL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L-~~RV~LvLAGHiHhYqR~~~ 619 (831)
|+++|.|.+.......... ......+.+.+ ..+++++++||.|.+++...
T Consensus 70 i~~~H~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~ 120 (131)
T cd00838 70 ILLTHGPPYDPLDELSPDE-DPGSEALLELLEKYGVDLVLSGHTHVYERREP 120 (131)
T ss_pred EEEeccCCCCCchhhcccc-hhhHHHHHHHHHHhCCCEEEeCCeeccccccC
Confidence 9999999998765432211 11122223333 56999999999999988763
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.70 E-value=5.7e-08 Score=96.42 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=64.6
Q ss_pred eEEEeCCCCCCCCChHHHHHHhhccccCCccccC----CCcceEEEEcC-CcEEEEEEecCCCCCCCHHHHHHHHHHHHh
Q 003314 486 QCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMP----QKKSYFALQLP-KGWWVFGLDLALHCDIDVYQFKFFAELVKE 560 (831)
Q Consensus 486 ~vfAIPGNHDWyDGL~aFlr~F~~r~~lgGW~mp----Q~~SYFAlrLp-~~wWLiGLDtql~gdID~~Q~~wFe~ll~~ 560 (831)
++++++||||.+.+......... ..++... ..........+ .+..|+|++....... ..+.++.++...
T Consensus 78 ~v~~~~GNHD~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~~~-~~~~~~~~~~~~- 151 (223)
T cd00840 78 PVFIIAGNHDSPSRLGALSPLLA----LSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRSRL-RDLLADAELRPR- 151 (223)
T ss_pred CEEEecCCCCCccccccccchHh----hCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHHHH-HHHHHHHHHHhh-
Confidence 39999999999877544332211 1122211 01112223333 3477888875432211 122333333332
Q ss_pred hcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCcee
Q 003314 561 QVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 617 (831)
Q Consensus 561 ~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~ 617 (831)
+..+++..|+++|+|.......... . ....++.+...+++++++||+|..+..
T Consensus 152 ~~~~~~~~Il~~H~~~~~~~~~~~~--~--~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 152 PLDPDDFNILLLHGGVAGAGPSDSE--R--APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred ccCCCCcEEEEEeeeeecCCCCccc--c--cccCcHhhcCcCCCEEECCCcccCeee
Confidence 3466778999999997544311110 0 111223333568999999999986544
No 30
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.54 E-value=2.4e-07 Score=99.41 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=74.7
Q ss_pred EEEeCCCCCCCCChHHHH-HHhhccc--cC--CccccCCCc-ceEEEEcCCcEEEEEEecCCCCCCCHHHHHH---HHHH
Q 003314 487 CYIIPGNHDWFDGLNTFM-RFICHKS--WL--GGWFMPQKK-SYFALQLPKGWWVFGLDLALHCDIDVYQFKF---FAEL 557 (831)
Q Consensus 487 vfAIPGNHDWyDGL~aFl-r~F~~r~--~l--gGW~mpQ~~-SYFAlrLp~~wWLiGLDtql~gdID~~Q~~w---Fe~l 557 (831)
+|||.|||||+....... ..+.... .. .+....+.. .++.. .....|..++|.+..... ..+.++ .++.
T Consensus 108 v~av~GNHd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~ 185 (284)
T COG1408 108 VFAVLGNHDYGVDRSNVYIGDLLEELGRVVLRNEIAVIDLLALRIEV-GGLDLYLAGVEDILAGLP-LAPFTIGLDIAEA 185 (284)
T ss_pred EEEEecccccccccccchhhhhhhhcceeeecccchhcccccccccc-cccccccccCchHHhhCc-ccccccccchhhh
Confidence 999999999998865532 2222111 00 001111110 01000 111245556655443322 000000 2223
Q ss_pred HHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceeeecC-------C-----CCC
Q 003314 558 VKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVP-------S-----DGP 625 (831)
Q Consensus 558 l~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~~~~-------~-----~G~ 625 (831)
+ ++.+++.+.|+++|+|..... +-.+.++|+||||+|.=|-..|.. . .|.
T Consensus 186 ~-~~~~~~~~~IlL~H~P~~~~~-----------------~~~~~~dLvLSGHTHGGQi~~p~~~~l~~~~~~~~~~~g~ 247 (284)
T COG1408 186 L-KQLDEDLPGILLSHEPDIILQ-----------------LRLYGVDLVLSGHTHGGQIRLPLWGPLVTNALSGRYRAGG 247 (284)
T ss_pred h-ccccccccceEeccCCceehh-----------------hccCcceEEEeccccCCeEEeecccccccccccccccccc
Confidence 3 356778899999999986543 113489999999999733332211 0 011
Q ss_pred --cccceEEEecCCCCCCCccccCCC
Q 003314 626 --VYVQHLLVNGCGGAFLHPTHVFSN 649 (831)
Q Consensus 626 --~~~~~lIVsGGGGAfLhPTH~~~~ 649 (831)
+-..+++||.|-|..--|.|...+
T Consensus 248 ~~~~~~~lyVSrGlG~~~~p~R~~~~ 273 (284)
T COG1408 248 LRQFGAQLYVSRGLGTTGPPIRLGCP 273 (284)
T ss_pred eecCCceEEEeCCcCCCCCCcccCCC
Confidence 112268999999987677777654
No 31
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.51 E-value=4.3e-07 Score=85.54 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=31.0
Q ss_pred CCeEEEEecCCCCCcccccCc---cchhhHHHHHHhhhCCceeEEEcCccCCC
Q 003314 565 RDSVIIMTHEPNWLLDWYFNN---VSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (831)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~---~t~~~l~~Lie~~L~~RV~LvLAGHiHhY 614 (831)
+++.|+++|.|++....+... ...+.+.+++++. ++++.++||+|..
T Consensus 67 ~~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~i~GH~H~~ 116 (135)
T cd07379 67 EDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRV---RPKLHVFGHIHEG 116 (135)
T ss_pred CCCEEEEECCCCCcCccccccCcccCCHHHHHHHHHH---CCcEEEEcCcCCc
Confidence 456799999999876533211 1123344444444 7899999999975
No 32
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.15 E-value=7.4e-06 Score=81.54 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=26.4
Q ss_pred EEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceeeecC
Q 003314 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVP 621 (831)
Q Consensus 569 IL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~~~~ 621 (831)
|+++|+|.+. +++ +.+++++||||+|.+.+.....
T Consensus 119 i~l~H~p~~~---------------~~~---~~~~~~~lsGH~H~~~~~~~~~ 153 (171)
T cd07384 119 ILLTHIPLYR---------------LLD---TIKPVLILSGHDHDQCEVVHSS 153 (171)
T ss_pred eeEECCccHH---------------HHh---ccCceEEEeCcccCCeEEEecC
Confidence 9999999853 112 3478899999999997776554
No 33
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=98.13 E-value=1.7e-05 Score=89.36 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=46.9
Q ss_pred CcceEEEEcCCcEEEEEEecCCCCC---------------------CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCc
Q 003314 521 KKSYFALQLPKGWWVFGLDLALHCD---------------------IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLL 579 (831)
Q Consensus 521 ~~SYFAlrLp~~wWLiGLDtql~gd---------------------ID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~ 579 (831)
.+.|+.++.++..-|+.||+-..-+ +..+|++||++.|++ ....++|+++.-|.-..
T Consensus 252 ~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~--s~a~~kvi~s~v~~~~~ 329 (453)
T PF09423_consen 252 GRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLAS--SQATWKVIGSSVPFSPL 329 (453)
T ss_dssp ----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH----SSEEEEE-SS--S--
T ss_pred CceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhc--CCCcEEEEEeCCceecc
Confidence 3469999999877899999964211 235899999999975 33669999887764322
Q ss_pred cccc---------Cccc--hhhHHHHHHhhhCCce--eEEEcCccCCC
Q 003314 580 DWYF---------NNVS--GKNVKHLICDYLKGRC--KLRIAGDMHHY 614 (831)
Q Consensus 580 ~~~~---------~~~t--~~~l~~Lie~~L~~RV--~LvLAGHiHhY 614 (831)
.... +.-. ....+.|++.+-..++ -++||||+|.-
T Consensus 330 ~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDvH~~ 377 (453)
T PF09423_consen 330 NFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDVHAS 377 (453)
T ss_dssp -SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SSSSE
T ss_pred cccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCcchh
Confidence 2110 0001 1112233333322344 48999999963
No 34
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.12 E-value=9e-06 Score=83.50 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=30.6
Q ss_pred EEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceeeecC
Q 003314 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVP 621 (831)
Q Consensus 569 IL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~~~~ 621 (831)
|+++|-|.+.... .-..+.+. +.++++.+|||.|.+..++...
T Consensus 112 i~lsH~P~~~~~~-------~~~~~~~~---~~~p~~Ifs~H~H~s~~~~~~~ 154 (195)
T cd08166 112 IMLSHVPLLAEGG-------QALKHVVT---DLDPDLIFSAHRHKSSIFMYDR 154 (195)
T ss_pred eeeeccccccccc-------HHHHHHHH---hcCceEEEEcCccceeeEEeec
Confidence 9999999987542 11223333 3499999999999988876443
No 35
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=97.76 E-value=7.1e-05 Score=73.46 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=23.9
Q ss_pred EEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceeeec
Q 003314 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 620 (831)
Q Consensus 569 IL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~~~ 620 (831)
|++.|+|... .+.+ .++++.||||+|...+....
T Consensus 107 ~~l~H~p~~~---------------~~~~---~~~~~~l~GH~H~~~~~~~~ 140 (156)
T cd08165 107 ILLQHFPLYR---------------LLQW---LKPRLVLSGHTHSFCEVTHP 140 (156)
T ss_pred eeeeCChHHH---------------HHHh---hCCCEEEEcccCCCceeEEE
Confidence 8999999732 1122 36779999999996666544
No 36
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=97.71 E-value=0.00056 Score=72.46 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=36.2
Q ss_pred hcCCCCeEEEEecCCCCCcccccCc-----------cch-hhHHHHHHhhh-CCceeEEEcCccCCCceee
Q 003314 561 QVGERDSVIIMTHEPNWLLDWYFNN-----------VSG-KNVKHLICDYL-KGRCKLRIAGDMHHYMRHS 618 (831)
Q Consensus 561 ~v~~~d~VIL~tHeP~w~~~~~~~~-----------~t~-~~l~~Lie~~L-~~RV~LvLAGHiHhYqR~~ 618 (831)
.+.++++.|+++|.|..-.+...++ .-+ ..+...++++- +.++++++.||+||=-|+.
T Consensus 142 ~~~~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~ 212 (238)
T cd07397 142 KAPPDLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLRRG 212 (238)
T ss_pred hcCCCCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEeCCccCccccc
Confidence 4567888999999998655421111 011 23333344442 4568999999999865554
No 37
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=97.68 E-value=8.4e-05 Score=76.39 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=24.2
Q ss_pred EEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceee
Q 003314 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 618 (831)
Q Consensus 569 IL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~ 618 (831)
|+++|+|.+... .+.+++++||||+|.=++..
T Consensus 129 ilL~H~P~~~~~------------------~~~~~dl~lSGHtHgGqi~~ 160 (193)
T cd08164 129 ILLTHVPLYKIF------------------LEGKPGLILTGHDHEGCDYQ 160 (193)
T ss_pred EEEEcccceecc------------------ccCCCCEEEeCccCCCeEEE
Confidence 999999987611 13478999999999866554
No 38
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=97.64 E-value=0.0015 Score=68.79 Aligned_cols=176 Identities=22% Similarity=0.289 Sum_probs=91.5
Q ss_pred CeEEEEEeecCCCCCCchHHHHHhcccccccccCCCCcccCCccEEEEcccccCCC--CChhhhhcccccchhhhcCCCC
Q 003314 381 DLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPN--PSAFTYERRLFRPFEYALQPPP 458 (831)
Q Consensus 381 ~~wFd~VgDtGDG~dStYtVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~--gs~e~Y~~Rf~~PYe~Al~~~~ 458 (831)
.+.+.+++|.=...++.-++....+. -++|+++++||++|-. +....-+... .++
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~--------------~~~D~lviaGDlt~~~~~~~~~~~~~~~---~e~------ 59 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAAD--------------IRADLLVIAGDLTYFHFGPKEVAEELNK---LEA------ 59 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhh--------------ccCCEEEEecceehhhcCchHHHHhhhH---HHH------
Confidence 45677888885444433333333221 1589999999999332 2221111110 111
Q ss_pred CCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCChHHHHHHhhccccCCccccCCCcceEEEEcCCcEEEEEE
Q 003314 459 WYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGL 538 (831)
Q Consensus 459 ~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL~aFlr~F~~r~~lgGW~mpQ~~SYFAlrLp~~wWLiGL 538 (831)
++....| ++|+|||=|- ..-.+.+.. .+-.+..+ .+++.. .-+.|+
T Consensus 60 --------------------l~~~~~~-v~avpGNcD~----~~v~~~l~~----~~~~v~~~----v~~i~~-~~~~G~ 105 (226)
T COG2129 60 --------------------LKELGIP-VLAVPGNCDP----PEVIDVLKN----AGVNVHGR----VVEIGG-YGFVGF 105 (226)
T ss_pred --------------------HHhcCCe-EEEEcCCCCh----HHHHHHHHh----cccccccc----eEEecC-cEEEEe
Confidence 2233445 9999999664 111111111 12222222 455554 345553
Q ss_pred -ecCCCC-----CC-CHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCccccc--C--ccchhhHHHHHHhhhCCceeEEE
Q 003314 539 -DLALHC-----DI-DVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYF--N--NVSGKNVKHLICDYLKGRCKLRI 607 (831)
Q Consensus 539 -Dtql~g-----dI-D~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~--~--~~t~~~l~~Lie~~L~~RV~LvL 607 (831)
.++... .. ++.=+..+.+.++... +...|+++|.|+|.-..-. . ......++.+++++ ++.+.+
T Consensus 106 Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~--~~~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieef---qP~l~i 180 (226)
T COG2129 106 GGSNPTPFNTPREFSEDEIYSKLKSLVKKAD--NPVNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEF---QPLLGL 180 (226)
T ss_pred cccCCCCCCCccccCHHHHHHHHHHHHhccc--CcceEEEecCCCCCccccCCCCccccchHHHHHHHHHh---CCceEE
Confidence 222211 12 2233455666554311 1122999999999764321 0 11134577888887 889999
Q ss_pred cCccCCCceee
Q 003314 608 AGDMHHYMRHS 618 (831)
Q Consensus 608 AGHiHhYqR~~ 618 (831)
+||+|-++-..
T Consensus 181 ~GHIHEs~G~d 191 (226)
T COG2129 181 HGHIHESRGID 191 (226)
T ss_pred Eeeeccccccc
Confidence 99999854444
No 39
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=97.57 E-value=0.0014 Score=69.05 Aligned_cols=112 Identities=21% Similarity=0.188 Sum_probs=61.0
Q ss_pred EEEeCCCCCCCCChHHHHHHhhcc--ccCC-cc------c-cCCCcceEEEEcCC-cEEEEEEecCCCC--------C--
Q 003314 487 CYIIPGNHDWFDGLNTFMRFICHK--SWLG-GW------F-MPQKKSYFALQLPK-GWWVFGLDLALHC--------D-- 545 (831)
Q Consensus 487 vfAIPGNHDWyDGL~aFlr~F~~r--~~lg-GW------~-mpQ~~SYFAlrLp~-~wWLiGLDtql~g--------d-- 545 (831)
-++++||||+.-|.+.+.+.+-+- .+++ .. . .++-.+|-.++... ..=++|+.+.... .
T Consensus 73 d~~~~GNHefd~g~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~ 152 (257)
T cd07406 73 DLACFGNHEFDFGEDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVR 152 (257)
T ss_pred cEEeecccccccCHHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCCcce
Confidence 466899999977887777765321 1221 00 1 11123576776653 1345666553211 0
Q ss_pred -CCHH--HHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 003314 546 -IDVY--QFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (831)
Q Consensus 546 -ID~~--Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYq 615 (831)
.|.. -.++.+++. .+.-|-||+++|-|... ...+.+++ ..++++|+||.|..+
T Consensus 153 ~~d~~~~~~~~v~~~~---~~~~D~iVvl~H~g~~~------------d~~la~~~--~~iD~IlgGH~H~~~ 208 (257)
T cd07406 153 YRDYVETARELVDELR---EQGADLIIALTHMRLPN------------DKRLAREV--PEIDLILGGHDHEYI 208 (257)
T ss_pred EcCHHHHHHHHHHHHH---hCCCCEEEEEeccCchh------------hHHHHHhC--CCCceEEecccceeE
Confidence 1221 122332221 13457999999998521 11233443 579999999999865
No 40
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.57 E-value=0.00026 Score=67.33 Aligned_cols=49 Identities=22% Similarity=0.066 Sum_probs=28.2
Q ss_pred eEEEEecCCCCCcccccCc--cchhhHHHHHHhhhCCceeEEEcCccCCCceee
Q 003314 567 SVIIMTHEPNWLLDWYFNN--VSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 618 (831)
Q Consensus 567 ~VIL~tHeP~w~~~~~~~~--~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~ 618 (831)
..|+++|+|.+-....... ...+.+.++++ +.+++++|+||+|......
T Consensus 57 ~~Ilv~H~pp~~~~~~~~~~~~g~~~l~~~l~---~~~~~~vl~GH~H~~~~~~ 107 (129)
T cd07403 57 VDILLTHAPPAGIGDGEDFAHRGFEAFLDFID---RFRPKLFIHGHTHLNYGYQ 107 (129)
T ss_pred cCEEEECCCCCcCcCcccccccCHHHHHHHHH---HHCCcEEEEcCcCCCcCcc
Confidence 4489999998744321110 11222223333 4479999999999644433
No 41
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=97.52 E-value=0.00022 Score=66.94 Aligned_cols=60 Identities=15% Similarity=0.295 Sum_probs=36.6
Q ss_pred CCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCC
Q 003314 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGA 639 (831)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGA 639 (831)
+...|+++|.+.+.... ..+.+... +...+++++++||+|..+..... ...++..|+-+.
T Consensus 80 ~~~~i~~~H~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~GH~H~~~~~~~~-------~~~~~~~Gs~~~ 139 (156)
T PF12850_consen 80 DGFKILLSHGHPYDVQW-----DPAELREI---LSRENVDLVLHGHTHRPQVFKIG-------GIHVINPGSIGG 139 (156)
T ss_dssp TTEEEEEESSTSSSSTT-----THHHHHHH---HHHTTSSEEEESSSSSEEEEEET-------TEEEEEE-GSSS
T ss_pred cCCeEEEECCCCccccc-----Chhhhhhh---hcccCCCEEEcCCcccceEEEEC-------CEEEEECCcCCC
Confidence 45789999988876431 11222222 22569999999999986555421 225677776554
No 42
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=97.48 E-value=0.0044 Score=63.98 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=61.4
Q ss_pred EEEeCCCCCCCCChHHHHHHhhccc--cCC-ccc-------cCCCcceEEEEcCC-cEEEEEEecCCCCCC---------
Q 003314 487 CYIIPGNHDWFDGLNTFMRFICHKS--WLG-GWF-------MPQKKSYFALQLPK-GWWVFGLDLALHCDI--------- 546 (831)
Q Consensus 487 vfAIPGNHDWyDGL~aFlr~F~~r~--~lg-GW~-------mpQ~~SYFAlrLp~-~wWLiGLDtql~gdI--------- 546 (831)
-++++||||+.-|.+.+...+-+-. +++ +.. .+.-..|-.++... ..-++|+.+......
T Consensus 72 d~~~~GNHe~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~ 151 (252)
T cd00845 72 DAVTIGNHEFDYGLDALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGL 151 (252)
T ss_pred CEEeeccccccccHHHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCcccCc
Confidence 4456799998767766555543211 111 110 01112354555542 255777765432111
Q ss_pred C-HHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCcee
Q 003314 547 D-VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 617 (831)
Q Consensus 547 D-~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~ 617 (831)
+ ....+-+++..++..+..|-||+++|-|.-. ..++.++. ..++++|+||.|..+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~D~vIvl~H~g~~~------------~~~la~~~--~giDlvlggH~H~~~~~ 209 (252)
T cd00845 152 PFEDLAEAVAVAEELLAEGADVIILLSHLGLDD------------DEELAEEV--PGIDVILGGHTHHLLEE 209 (252)
T ss_pred eecCHHHHHHHHHHHHhCCCCEEEEEeccCccc------------hHHHHhcC--CCccEEEcCCcCcccCC
Confidence 0 1112223322222335678999999988642 11222332 57999999999986653
No 43
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.46 E-value=0.00079 Score=69.90 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.2
Q ss_pred CCceeEEEcCccCCCcee
Q 003314 600 KGRCKLRIAGDMHHYMRH 617 (831)
Q Consensus 600 ~~RV~LvLAGHiHhYqR~ 617 (831)
+++++++++||+|.-..+
T Consensus 185 ~~~~~~~i~GH~H~~~~~ 202 (241)
T PRK05340 185 KHGVDTLIHGHTHRPAIH 202 (241)
T ss_pred HhCCCEEEECcccCccee
Confidence 458999999999975444
No 44
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=97.44 E-value=0.00057 Score=65.28 Aligned_cols=58 Identities=17% Similarity=0.075 Sum_probs=32.6
Q ss_pred CeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCC
Q 003314 566 DSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGA 639 (831)
Q Consensus 566 d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGA 639 (831)
+..|+++|-|.+..... .+. ..+++ ..+++++++||+|...... .. ...+|-.|.-|.
T Consensus 75 g~~i~v~Hg~~~~~~~~-----~~~-~~~~~---~~~~d~vi~GHtH~~~~~~-~~------~~~~inpGs~~~ 132 (155)
T cd00841 75 GKRIFLTHGHLYGVKNG-----LDR-LYLAK---EGGADVVLYGHTHIPVIEK-IG------GVLLLNPGSLSL 132 (155)
T ss_pred CEEEEEECCcccccccc-----hhh-hhhhh---hcCCCEEEECcccCCccEE-EC------CEEEEeCCCccC
Confidence 46688999887654311 111 11212 3478999999999654322 11 124566666553
No 45
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.40 E-value=0.0021 Score=66.45 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=21.1
Q ss_pred CCceeEEEcCccCCCceeeecCCCCCcccceEEEecC
Q 003314 600 KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGC 636 (831)
Q Consensus 600 ~~RV~LvLAGHiHhYqR~~~~~~~G~~~~~~lIVsGG 636 (831)
+.+++++++||+|.=+.+.-.. .|. ...++|.|.
T Consensus 183 ~~~~~~~i~GHtH~~~~~~~~~-~~~--~~~~~~lgd 216 (231)
T TIGR01854 183 RYGVDRLIHGHTHRPAIHPLQA-DGQ--PATRIVLGD 216 (231)
T ss_pred HcCCCEEEECCccCcceeeccc-CCC--ccEEEEECC
Confidence 4589999999999755443221 111 225777765
No 46
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=97.39 E-value=0.00059 Score=72.17 Aligned_cols=161 Identities=21% Similarity=0.326 Sum_probs=75.4
Q ss_pred CccEEEEcccccCCCCChhhhhccc---ccchhhhcCCCCCCcccccccCCCCCCC----------CC-cccccCCCCeE
Q 003314 422 RGDVLLIGGDLAYPNPSAFTYERRL---FRPFEYALQPPPWYKKDHVAVNKPEVPS----------GV-PELKQYDGPQC 487 (831)
Q Consensus 422 rgdfLVlgGDlvYP~gs~e~Y~~Rf---~~PYe~Al~~~~~~~~e~i~~~kpelp~----------~~-~~l~~~~gP~v 487 (831)
++|.|+++||+.=+.+...+|++-- -+| +|++.-+ .. ..|... ++++
T Consensus 32 ~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p------------------~k~~i~~e~~~~~e~~~~ff~~L~~~-~~p~ 92 (255)
T PF14582_consen 32 GPDAVVFVGDLLKAEARSDEYERAQEEQREP------------------DKSEINEEECYDSEALDKFFRILGEL-GVPV 92 (255)
T ss_dssp T-SEEEEES-SS-TCHHHHHHHHHHHTT----------------------THHHHHHHHHHHHHHHHHHHHHHCC--SEE
T ss_pred CCCEEEEeccccccchhhhHHHHHhhhccCc------------------chhhhhhhhhhhHHHHHHHHHHHHhc-CCcE
Confidence 6899999999988877777777200 001 0111000 00 012233 3559
Q ss_pred EEeCCCCCCCCChHHHHHHhhcccc-CCccccCCCcceEEEEcCCcEEEEEEecCCCCC--CC--H-----HHHHHHHHH
Q 003314 488 YIIPGNHDWFDGLNTFMRFICHKSW-LGGWFMPQKKSYFALQLPKGWWVFGLDLALHCD--ID--V-----YQFKFFAEL 557 (831)
Q Consensus 488 fAIPGNHDWyDGL~aFlr~F~~r~~-lgGW~mpQ~~SYFAlrLp~~wWLiGLDtql~gd--ID--~-----~Q~~wFe~l 557 (831)
+.||||||=+ +..|+|.-..... ....++-++ |+|-.+-+ +-++|+.--...+ .+ . .-.+|-.+.
T Consensus 93 ~~vPG~~Dap--~~~~lr~a~~~e~v~p~~~~vH~-sf~~~~g~--y~v~G~GGeI~~~~~~~~~~LrYP~weaey~lk~ 167 (255)
T PF14582_consen 93 FVVPGNMDAP--ERFFLREAYNAEIVTPHIHNVHE-SFFFWKGE--YLVAGMGGEITDDQREEEFKLRYPAWEAEYSLKF 167 (255)
T ss_dssp EEE--TTS-S--HHHHHHHHHHCCCC-TTEEE-CT-CEEEETTT--EEEEEE-SEEESSS-BCSSS-EEEHHHHHHHHGG
T ss_pred EEecCCCCch--HHHHHHHHhccceeccceeeeee-eecccCCc--EEEEecCccccCCCccccccccchHHHHHHHHHH
Confidence 9999999963 2246665333111 123334344 34333222 5577875332111 11 0 123344444
Q ss_pred HHhhcCCCCeEEEEecCCC-CCcccccCccchhhHHHHHHhhhCCceeEEEcCccCC
Q 003314 558 VKEQVGERDSVIIMTHEPN-WLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (831)
Q Consensus 558 l~~~v~~~d~VIL~tHeP~-w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHh 613 (831)
+++ +. +.+.|++.|-|+ .-.+..+ ...+.++++|+++ +.+++|+||+|-
T Consensus 168 l~e-lk-~~r~IlLfhtpPd~~kg~~h--~GS~~V~dlIk~~---~P~ivl~Ghihe 217 (255)
T PF14582_consen 168 LRE-LK-DYRKILLFHTPPDLHKGLIH--VGSAAVRDLIKTY---NPDIVLCGHIHE 217 (255)
T ss_dssp GGG-CT-SSEEEEEESS-BTBCTCTBT--TSBHHHHHHHHHH-----SEEEE-SSS-
T ss_pred HHh-cc-cccEEEEEecCCccCCCccc--ccHHHHHHHHHhc---CCcEEEeccccc
Confidence 433 33 448999999999 2222111 1235678888888 999999999995
No 47
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=97.23 E-value=0.0017 Score=65.93 Aligned_cols=24 Identities=13% Similarity=-0.089 Sum_probs=19.3
Q ss_pred CcceEEEEcCCcEEEEEEecCCCC
Q 003314 521 KKSYFALQLPKGWWVFGLDLALHC 544 (831)
Q Consensus 521 ~~SYFAlrLp~~wWLiGLDtql~g 544 (831)
..-|+.++++....|+.||+...-
T Consensus 146 ~~~y~~~~~G~~~~~~~lD~R~~R 169 (228)
T cd07389 146 GGIYRSFRFGDLVDLILLDTRTYR 169 (228)
T ss_pred ceEEEEEecCCcceEEEEeccccc
Confidence 457999999986689999986654
No 48
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=97.19 E-value=0.0074 Score=63.78 Aligned_cols=123 Identities=17% Similarity=0.137 Sum_probs=62.3
Q ss_pred EEeCCCCCCCCChHHHHHHhhccc--cC-Cccc-----cCCCcceEEEEcC-C-cEEEEEEecCCCC---------C---
Q 003314 488 YIIPGNHDWFDGLNTFMRFICHKS--WL-GGWF-----MPQKKSYFALQLP-K-GWWVFGLDLALHC---------D--- 545 (831)
Q Consensus 488 fAIPGNHDWyDGL~aFlr~F~~r~--~l-gGW~-----mpQ~~SYFAlrLp-~-~wWLiGLDtql~g---------d--- 545 (831)
++++||||+.-|.+.+.+..-.-. ++ .... .|.-.+|..++.. . ..=++|+=+.... +
T Consensus 86 ~~~lGNHe~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~ 165 (277)
T cd07410 86 AGTLGNHEFNYGLDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTPQIPNWEKPNLIGGLKF 165 (277)
T ss_pred EEeecccCcccCHHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCcccccccCcccCCCcEE
Confidence 556799997667776665542211 11 1111 1222357667776 3 2345555322110 1
Q ss_pred CCH-HHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccc-hhhHHHHHHhhhCCceeEEEcCccCCCce
Q 003314 546 IDV-YQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVS-GKNVKHLICDYLKGRCKLRIAGDMHHYMR 616 (831)
Q Consensus 546 ID~-~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t-~~~l~~Lie~~L~~RV~LvLAGHiHhYqR 616 (831)
.|. +..+...+.+++ +.-|-||+++|-+...... .... .....++.+++ ..++++|+||.|....
T Consensus 166 ~d~~~~~~~~v~~lr~--~~~D~IIvl~H~g~~~~~~--~~~~~~~~~~~la~~~--~~vD~IlgGHsH~~~~ 232 (277)
T cd07410 166 TDPVETAKKYVPKLRA--EGADVVVVLAHGGFERDLE--ESLTGENAAYELAEEV--PGIDAILTGHQHRRFP 232 (277)
T ss_pred cCHHHHHHHHHHHHHH--cCCCEEEEEecCCcCCCcc--cccCCccHHHHHHhcC--CCCcEEEeCCCccccc
Confidence 122 123344444432 3457999999987653211 0111 11223444443 4799999999997543
No 49
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=97.18 E-value=0.0025 Score=74.44 Aligned_cols=128 Identities=20% Similarity=0.299 Sum_probs=77.9
Q ss_pred eEEEeCCCCCCCCChHHHHHHhhcc----ccC--------Ccc------ccCCCcceEEEEcCCcEEEEEEecCCCC---
Q 003314 486 QCYIIPGNHDWFDGLNTFMRFICHK----SWL--------GGW------FMPQKKSYFALQLPKGWWVFGLDLALHC--- 544 (831)
Q Consensus 486 ~vfAIPGNHDWyDGL~aFlr~F~~r----~~l--------gGW------~mpQ~~SYFAlrLp~~wWLiGLDtql~g--- 544 (831)
++|+..||||...= ..|...+..+ .|+ ..| ++-+++.||+....+|-.++.|++.-..
T Consensus 252 pvypalGNhe~~P~-N~F~~~~~~~~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N 330 (577)
T KOG3770|consen 252 PVYPALGNHEIHPV-NLFAPGSVPKRHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPN 330 (577)
T ss_pred ceeeecccCCCCcH-hhcCCCCCcchhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccc
Confidence 39999999997521 1222222111 121 122 1335667999999999999999986321
Q ss_pred ------CCC-HHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccC-CCce
Q 003314 545 ------DID-VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMH-HYMR 616 (831)
Q Consensus 545 ------dID-~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiH-hYqR 616 (831)
..| .+|++||..+|+++-..++.|=+++|=|.=..... ..- ..+--..+.++ ..-+.-.+-||.| +..|
T Consensus 331 ~~L~~n~tdp~~~lqWf~~~L~~ae~~GekVhil~HIPpG~~~c~-~~w-s~~f~~iv~r~-~~tI~gqf~GH~h~d~f~ 407 (577)
T KOG3770|consen 331 FWLYANQTDPIDQLQWFVDQLQEAESAGEKVHILGHIPPGDGVCL-EGW-SINFYRIVNRF-RSTIAGQFYGHTHIDEFR 407 (577)
T ss_pred eeeeecCCCchHHhhHHHHHHHHHHhcCCEEEEEEeeCCCCcchh-hhh-hHHHHHHHHHH-HHhhhhhccccCcceeEE
Confidence 122 47899999999876778899999999998542211 110 11111222222 3346678999999 4444
Q ss_pred e
Q 003314 617 H 617 (831)
Q Consensus 617 ~ 617 (831)
.
T Consensus 408 v 408 (577)
T KOG3770|consen 408 V 408 (577)
T ss_pred E
Confidence 3
No 50
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=97.16 E-value=0.0015 Score=63.28 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=12.0
Q ss_pred CCceeEEEcCccCC
Q 003314 600 KGRCKLRIAGDMHH 613 (831)
Q Consensus 600 ~~RV~LvLAGHiHh 613 (831)
..+++++++||+|.
T Consensus 104 ~~~~d~vi~GHtH~ 117 (158)
T TIGR00040 104 ELGVDVLIFGHTHI 117 (158)
T ss_pred ccCCCEEEECCCCC
Confidence 35789999999995
No 51
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=97.16 E-value=0.0076 Score=63.55 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=58.6
Q ss_pred EeCCCCCCCCChHHHHHHhhccc--cCC------ccccCCCcceEEEEcCC-cEEEEEEecCCCCCCC----------HH
Q 003314 489 IIPGNHDWFDGLNTFMRFICHKS--WLG------GWFMPQKKSYFALQLPK-GWWVFGLDLALHCDID----------VY 549 (831)
Q Consensus 489 AIPGNHDWyDGL~aFlr~F~~r~--~lg------GW~mpQ~~SYFAlrLp~-~wWLiGLDtql~gdID----------~~ 549 (831)
++-||||+.-|.+.+.+.+-+-. ++. +...|.-.+|..++... ..=++|+.+....... ..
T Consensus 87 a~~GNHefd~g~~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~ 166 (264)
T cd07411 87 AMVGHWEFTYGPERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGI 166 (264)
T ss_pred EEecccccccCHHHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECC
Confidence 33399997768777666543211 110 01112222465555543 2557788654211110 11
Q ss_pred HHHHHHHHHHh--hcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCC
Q 003314 550 QFKFFAELVKE--QVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (831)
Q Consensus 550 Q~~wFe~ll~~--~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhY 614 (831)
..+.+.+.+.+ +.+..|-||+++|-+.-. -..+.+++ ..++++|+||.|..
T Consensus 167 ~~~~~~~~~~~~~~~~~~D~iI~l~H~g~~~------------~~~la~~~--~~iDlilgGH~H~~ 219 (264)
T cd07411 167 REEELQEVVVKLRREEGVDVVVLLSHNGLPV------------DVELAERV--PGIDVILSGHTHER 219 (264)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEecCCchh------------hHHHHhcC--CCCcEEEeCccccc
Confidence 23344443221 124568999999987521 11233333 57999999999964
No 52
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=97.12 E-value=0.0076 Score=64.58 Aligned_cols=50 Identities=8% Similarity=0.070 Sum_probs=32.8
Q ss_pred CeEEEEecCCCCCcccccCc-----------------c-chhhHHHHHHhhhCCceeEEEcCccCC-Cceee
Q 003314 566 DSVIIMTHEPNWLLDWYFNN-----------------V-SGKNVKHLICDYLKGRCKLRIAGDMHH-YMRHS 618 (831)
Q Consensus 566 d~VIL~tHeP~w~~~~~~~~-----------------~-t~~~l~~Lie~~L~~RV~LvLAGHiHh-YqR~~ 618 (831)
+.=|++||+|+..-..+.+. . ....++++++.+ |.+..+|||.|. |++..
T Consensus 165 ~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~l---kPryhf~gH~H~~f~~~~ 233 (262)
T cd00844 165 PIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHL---KPRYWFSAHLHVKFAALV 233 (262)
T ss_pred CCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHh---CCCEEEEecCCcccceec
Confidence 34599999998775443321 0 112244555665 999999999996 66554
No 53
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=97.09 E-value=0.018 Score=64.14 Aligned_cols=164 Identities=17% Similarity=0.127 Sum_probs=85.7
Q ss_pred CCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCCh
Q 003314 421 PRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL 500 (831)
Q Consensus 421 PrgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL 500 (831)
.+||+||++||+++- -+...+++-+..-..- +-++.-| |-++.||||=-..+
T Consensus 99 E~PDlVVfTGD~i~g-~~t~Da~~sl~kAvaP--------------------------~I~~~IP-wA~~lGNHDdes~l 150 (379)
T KOG1432|consen 99 EKPDLVVFTGDNIFG-HSTQDAATSLMKAVAP--------------------------AIDRKIP-WAAVLGNHDDESDL 150 (379)
T ss_pred cCCCEEEEeCCcccc-cccHhHHHHHHHHhhh--------------------------HhhcCCC-eEEEeccccccccc
Confidence 358999999999997 3334454433222221 1223445 99999999965443
Q ss_pred H-HHHHHhhc-------ccc-CCccccCCC--cceEEEEcC----------CcEEEEEEecCCC----------CCCCHH
Q 003314 501 N-TFMRFICH-------KSW-LGGWFMPQK--KSYFALQLP----------KGWWVFGLDLALH----------CDIDVY 549 (831)
Q Consensus 501 ~-aFlr~F~~-------r~~-lgGW~mpQ~--~SYFAlrLp----------~~wWLiGLDtql~----------gdID~~ 549 (831)
. ..++-|.. +.. ..|+...+. +.| -++++ ...=|..||+... +.|...
T Consensus 151 tr~ql~~~i~~lP~s~~~v~p~dg~~~~~~g~gny-n~~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~s 229 (379)
T KOG1432|consen 151 TRLQLMKFISKLPYSLSQVNPPDGHMYIIDGFGNY-NLQIEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKES 229 (379)
T ss_pred CHHHHHHHHhcCCCccccCCCcccceeeeecccce-EEEeccCCCcccccCceeeEEEEecCCcccccccccCccchhhh
Confidence 3 22222222 110 123322121 233 33332 1234777887532 235678
Q ss_pred HHHHHHHHHHhh----cCCCC-eEEEEecCCCCCcccccCc--------c-c--hhhHHHHHHhhh-CCceeEEEcCccC
Q 003314 550 QFKFFAELVKEQ----VGERD-SVIIMTHEPNWLLDWYFNN--------V-S--GKNVKHLICDYL-KGRCKLRIAGDMH 612 (831)
Q Consensus 550 Q~~wFe~ll~~~----v~~~d-~VIL~tHeP~w~~~~~~~~--------~-t--~~~l~~Lie~~L-~~RV~LvLAGHiH 612 (831)
|.+|+++.-.+. ...++ +=+..-|-|.=.......+ + + ...-...+..+- +.+|+.+++||.|
T Consensus 230 q~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdH 309 (379)
T KOG1432|consen 230 QLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDH 309 (379)
T ss_pred hHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCCCcccceeeccccccccccHHHHHHHhccCcceEEecccc
Confidence 999999976211 11222 5677788875332221110 0 0 000112223333 5799999999999
Q ss_pred C
Q 003314 613 H 613 (831)
Q Consensus 613 h 613 (831)
.
T Consensus 310 v 310 (379)
T KOG1432|consen 310 V 310 (379)
T ss_pred c
Confidence 6
No 54
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=97.04 E-value=0.0072 Score=62.29 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=42.0
Q ss_pred CCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceeeecCCCCCcccceEEEec
Q 003314 564 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNG 635 (831)
Q Consensus 564 ~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~~~~~~G~~~~~~lIVsG 635 (831)
+-+.+||++|-|+.+.+. +...+.+++|+ +||+..+-||+|.-+|-.+.-+.- +.++..+|+-
T Consensus 157 ~~~~fivM~HYPP~s~~~-----t~~~~sevlee---~rv~~~lyGHlHgv~~p~~~~s~v-~Gi~y~Lvaa 219 (230)
T COG1768 157 GVSKFIVMTHYPPFSDDG-----TPGPFSEVLEE---GRVSKCLYGHLHGVPRPNIGFSNV-RGIEYMLVAA 219 (230)
T ss_pred CcCeEEEEEecCCCCCCC-----CCcchHHHHhh---cceeeEEeeeccCCCCCCCCcccc-cCceEEEEec
Confidence 357999999999988763 23345566665 599999999999977654433221 1244445543
No 55
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.0034 Score=69.54 Aligned_cols=52 Identities=29% Similarity=0.450 Sum_probs=32.3
Q ss_pred CccEEEEcccccCCCCChhhhh-cccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCCh
Q 003314 422 RGDVLLIGGDLAYPNPSAFTYE-RRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL 500 (831)
Q Consensus 422 rgdfLVlgGDlvYP~gs~e~Y~-~Rf~~PYe~Al~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDGL 500 (831)
+.|+||++||+ |..+....+. .++.+-++. +++..-| +|+|+||||.-+++
T Consensus 40 ~vD~vliAGDl-Fd~~~Ps~~a~~~~~~~l~~--------------------------l~~~~Ip-v~~I~GNHD~~~~~ 91 (390)
T COG0420 40 KVDFVLIAGDL-FDTNNPSPRALKLFLEALRR--------------------------LKDAGIP-VVVIAGNHDSPSRL 91 (390)
T ss_pred cCCEEEEcccc-ccCCCCCHHHHHHHHHHHHH--------------------------hccCCCc-EEEecCCCCchhcc
Confidence 46999999995 6665554443 233222222 2222345 99999999987664
Q ss_pred H
Q 003314 501 N 501 (831)
Q Consensus 501 ~ 501 (831)
.
T Consensus 92 ~ 92 (390)
T COG0420 92 S 92 (390)
T ss_pred c
Confidence 3
No 56
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.56 E-value=0.019 Score=63.11 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.1
Q ss_pred CeEEEeCCCCCCC
Q 003314 485 PQCYIIPGNHDWF 497 (831)
Q Consensus 485 P~vfAIPGNHDWy 497 (831)
.++++||||||.+
T Consensus 77 i~v~~I~GNHD~~ 89 (340)
T PHA02546 77 ITLHVLVGNHDMY 89 (340)
T ss_pred CeEEEEccCCCcc
Confidence 3499999999975
No 57
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=96.38 E-value=0.086 Score=56.47 Aligned_cols=116 Identities=13% Similarity=0.137 Sum_probs=60.1
Q ss_pred CeEEEeCCCCCCCCChHHHHHHhhccc--cCC-ccc--------cCCCcceEEEEcCC-cEEEEEEecCCCCCCCH----
Q 003314 485 PQCYIIPGNHDWFDGLNTFMRFICHKS--WLG-GWF--------MPQKKSYFALQLPK-GWWVFGLDLALHCDIDV---- 548 (831)
Q Consensus 485 P~vfAIPGNHDWyDGL~aFlr~F~~r~--~lg-GW~--------mpQ~~SYFAlrLp~-~wWLiGLDtql~gdID~---- 548 (831)
..+. .+||||+--|.+.+.+.+-+-. +++ +.. .+.-.+|-.++... ..-++|+-+........
T Consensus 83 ~D~~-~lGNHefd~G~~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~ 161 (281)
T cd07409 83 YDAM-TLGNHEFDDGVEGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGK 161 (281)
T ss_pred CCEE-EeccccccCCHHHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCc
Confidence 4344 5699999888877776543211 111 110 11112465555432 25677876543211110
Q ss_pred ----HHHHHHHHHHHhh-cCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 003314 549 ----YQFKFFAELVKEQ-VGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (831)
Q Consensus 549 ----~Q~~wFe~ll~~~-v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYq 615 (831)
.-.+-.++.+++. .+.-|-||+++|-..- .-..+.+++ ..++++++||.|...
T Consensus 162 ~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G~~------------~d~~la~~~--~giD~IiggH~H~~~ 219 (281)
T cd07409 162 VKFLDEIEAAQKEADKLKAQGVNKIIALSHSGYE------------VDKEIARKV--PGVDVIVGGHSHTFL 219 (281)
T ss_pred eEECCHHHHHHHHHHHHHhcCCCEEEEEeccCch------------hHHHHHHcC--CCCcEEEeCCcCccc
Confidence 1122344433221 1235789999998631 012333444 579999999999753
No 58
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=96.36 E-value=0.069 Score=60.78 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=26.0
Q ss_pred eEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 003314 567 SVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (831)
Q Consensus 567 ~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYq 615 (831)
.-|++.|....... .+ ...-+++++...++++.||+|.-+
T Consensus 202 fnIlv~Hq~~~~~~-----~~----~~ipe~llp~~fDYValGHiH~~~ 241 (405)
T TIGR00583 202 FNLLVLHQNHAAHT-----ST----SFLPESFIPDFFDLVIWGHEHECL 241 (405)
T ss_pred eEEEEeCceecCCC-----Cc----ccCchhhhhccCcEEEeccccccc
Confidence 46999999963221 11 112245556689999999999743
No 59
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=96.28 E-value=0.092 Score=55.30 Aligned_cols=123 Identities=20% Similarity=0.221 Sum_probs=61.5
Q ss_pred CCeEEEeCCCCCCCCChHHHHHHhhccc--cC-Cccc-----cCCCcceEEEEcCCc--EEEEEEecCCC------CC--
Q 003314 484 GPQCYIIPGNHDWFDGLNTFMRFICHKS--WL-GGWF-----MPQKKSYFALQLPKG--WWVFGLDLALH------CD-- 545 (831)
Q Consensus 484 gP~vfAIPGNHDWyDGL~aFlr~F~~r~--~l-gGW~-----mpQ~~SYFAlrLp~~--wWLiGLDtql~------gd-- 545 (831)
+..+. .+||||+.-|++.+.+..-.-. ++ +... .|.-.+|-.++...| .=++|+-+... ..
T Consensus 70 g~d~~-~~GNHefd~G~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~ 148 (257)
T cd07408 70 GYDAV-TPGNHEFDYGLDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVK 148 (257)
T ss_pred CCcEE-ccccccccCCHHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccC
Confidence 34454 5799998778887776543211 11 1111 111124655555523 44666654211 11
Q ss_pred -C---CHH--HHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCcee
Q 003314 546 -I---DVY--QFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 617 (831)
Q Consensus 546 -I---D~~--Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~ 617 (831)
+ |.. -.++..+.++ .+.-|-||+++|-+...... . .+..++.++ -..++++|+||.|....-
T Consensus 149 ~~~~~d~~~~~~~~~v~~l~--~~~~D~iIvl~H~G~~~~~~---~---~~~~~la~~--~~giDvIigGH~H~~~~~ 216 (257)
T cd07408 149 DVTFEDPIEEAKKVIVAALK--AKGADVIVALGHLGVDRTSS---P---WTSTELAAN--VTGIDLIIDGHSHTTIEI 216 (257)
T ss_pred CcEEecHHHHHHHHHHHHHH--hCCCCEEEEEeCcCcCCCCC---C---ccHHHHHHh--CCCceEEEeCCCcccccC
Confidence 1 211 1222122222 13457999999988654321 1 112233333 247999999999976543
No 60
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.03 E-value=0.005 Score=61.64 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=23.0
Q ss_pred HHhhh-CCceeEEEcCccCCCceeeecCCCCCcccceEEEecC
Q 003314 595 ICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGC 636 (831)
Q Consensus 595 ie~~L-~~RV~LvLAGHiHhYqR~~~~~~~G~~~~~~lIVsGG 636 (831)
+.+.+ ..+++++++||+|.-...... ...++++|+
T Consensus 181 ~~~~~~~~~~~~~i~GH~H~~~~~~~~-------~~~~~n~G~ 216 (217)
T cd07398 181 VARLARRKGVDGVICGHTHRPALHELD-------GKLYINLGD 216 (217)
T ss_pred HHHHHHhcCCCEEEECCCCCCCeEEEC-------CEEEEECCC
Confidence 34443 578999999999976555422 125677664
No 61
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.89 E-value=0.018 Score=61.25 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=21.0
Q ss_pred CCceeEEEcCccCCCceeeecCCCCCcccceEEEecC
Q 003314 600 KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGC 636 (831)
Q Consensus 600 ~~RV~LvLAGHiHhYqR~~~~~~~G~~~~~~lIVsGG 636 (831)
++.|+.+++||+|+-+-+.-. +..+||.|.
T Consensus 185 ~~~vd~vI~GH~Hr~ai~~i~-------~~~yi~lGd 214 (237)
T COG2908 185 RHGVDGVIHGHTHRPAIHNIP-------GITYINLGD 214 (237)
T ss_pred HcCCCEEEecCcccHhhccCC-------CceEEecCc
Confidence 679999999999974333211 236888775
No 62
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=95.71 E-value=0.11 Score=52.50 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.0
Q ss_pred CCceeEEEcCccCCCc
Q 003314 600 KGRCKLRIAGDMHHYM 615 (831)
Q Consensus 600 ~~RV~LvLAGHiHhYq 615 (831)
+.+++++++||+|.-.
T Consensus 104 ~~~~dvii~GHTH~p~ 119 (178)
T cd07394 104 QLDVDILISGHTHKFE 119 (178)
T ss_pred hcCCCEEEECCCCcce
Confidence 3578999999999643
No 63
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.61 E-value=0.44 Score=51.21 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=86.0
Q ss_pred EEEEeecCCCCCCchHHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCccc
Q 003314 384 FDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKD 463 (831)
Q Consensus 384 Fd~VgDtGDG~dStYtVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al~~~~~~~~e 463 (831)
+.|+||. -|......++..+.+- +. .-..|+++.-||++-.+ .. .. +|-..+|.
T Consensus 2 ilfigdi-~g~~G~~~~~~~l~~l--k~--------~~~~D~vi~NgEn~~gg-~g--l~----~~~~~~L~-------- 55 (255)
T cd07382 2 ILFIGDI-VGKPGRKAVKEHLPKL--KK--------EYKIDFVIANGENAAGG-KG--IT----PKIAKELL-------- 55 (255)
T ss_pred EEEEEeC-CCHHHHHHHHHHHHHH--HH--------HCCCCEEEECCccccCC-CC--CC----HHHHHHHH--------
Confidence 4677776 3555555677766542 11 12478999999975432 11 10 22222221
Q ss_pred ccccCCCCCCCCCcccccCCCCeEEEeCCCCCCCCC-hHHHHHHhhccccCCccc--cCCCcceEEEEcCCcEE--EEEE
Q 003314 464 HVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDG-LNTFMRFICHKSWLGGWF--MPQKKSYFALQLPKGWW--VFGL 538 (831)
Q Consensus 464 ~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDWyDG-L~aFlr~F~~r~~lgGW~--mpQ~~SYFAlrLp~~wW--LiGL 538 (831)
+ -+..++.+ |||+|=.| +..++......-...... .|. +.|..++.. |.. ++++
T Consensus 56 -----------------~-~G~D~iTl-GNH~fD~gel~~~l~~~~~~l~~aN~~~~~pg-~~~~i~~~~-G~kIaVigl 114 (255)
T cd07382 56 -----------------S-AGVDVITM-GNHTWDKKEILDFIDEEPRLLRPANYPPGTPG-RGYGVVEVN-GKKIAVINL 114 (255)
T ss_pred -----------------h-cCCCEEEe-cccccCcchHHHHHhcCcCceEeeecCCCCCC-CCeEEEEEC-CEEEEEEEE
Confidence 1 23446655 99999655 334443321100011111 222 246666664 444 4444
Q ss_pred ecC-CCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCC
Q 003314 539 DLA-LHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (831)
Q Consensus 539 Dtq-l~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhY 614 (831)
-.. ....++.| ++-.++++++..+.-|-+||.+|--. +.+. .-+..++.++|++++.||+|.-
T Consensus 115 ~g~~~~~~~~~P-~~~~~~~v~~lk~~~D~IIV~~H~g~----------tsEk--~ala~~ldg~VdvIvGtHTHv~ 178 (255)
T cd07382 115 MGRVFMPPLDNP-FRAADELLEELKEEADIIFVDFHAEA----------TSEK--IALGWYLDGRVSAVVGTHTHVQ 178 (255)
T ss_pred ecccCCCcCCCH-HHHHHHHHHHHhcCCCEEEEEECCCC----------CHHH--HHHHHhCCCCceEEEeCCCCcc
Confidence 311 11123333 33355555421223568999999732 1111 1123455789999999999964
No 64
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=95.59 E-value=0.0088 Score=67.68 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=17.1
Q ss_pred eEEEeCCCCCCCCChHHHHHHh
Q 003314 486 QCYIIPGNHDWFDGLNTFMRFI 507 (831)
Q Consensus 486 ~vfAIPGNHDWyDGL~aFlr~F 507 (831)
++++|+||||.+..+....+.+
T Consensus 76 ~v~~I~GNHD~~~~l~~~~~~l 97 (407)
T PRK10966 76 QLVVLAGNHDSVATLNESRDLL 97 (407)
T ss_pred cEEEEcCCCCChhhhhhHHHHH
Confidence 3999999999988776555544
No 65
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=95.16 E-value=0.011 Score=60.83 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=30.4
Q ss_pred cCCccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCC
Q 003314 420 LPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDW 496 (831)
Q Consensus 420 lPrgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDW 496 (831)
.++.|.++++||++=-++...+--..+.+..+.+.. ..++ ++.|+||||.
T Consensus 30 ~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~--------------------------~~~~-v~~l~GNHE~ 79 (208)
T cd07425 30 IGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAK--------------------------AGGK-VHFLLGNHEL 79 (208)
T ss_pred cCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHh--------------------------cCCe-EEEeeCCCcH
Confidence 346789999999886555443333333333322211 1233 9999999996
No 66
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.03 E-value=0.014 Score=61.81 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.3
Q ss_pred eEEEeCCCCCCCCChH
Q 003314 486 QCYIIPGNHDWFDGLN 501 (831)
Q Consensus 486 ~vfAIPGNHDWyDGL~ 501 (831)
++++|+||||..+.+.
T Consensus 77 ~v~~i~GNHD~~~~~~ 92 (253)
T TIGR00619 77 PIVVISGNHDSAQRLS 92 (253)
T ss_pred eEEEEccCCCChhhcc
Confidence 4999999999876654
No 67
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=94.92 E-value=0.61 Score=50.59 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=45.0
Q ss_pred ceEEEEcCCcEE--EEEEecCCC---CCC---C---HHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhH
Q 003314 523 SYFALQLPKGWW--VFGLDLALH---CDI---D---VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNV 591 (831)
Q Consensus 523 SYFAlrLp~~wW--LiGLDtql~---gdI---D---~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l 591 (831)
+|..++..+|.. ++|+=+... ..+ | ..|.+|+.+++++ +.-|-||+++|-..-... +.....
T Consensus 137 ~y~i~~~~~G~kIgiiGltt~~~~~~~~~~f~d~~~~~~~~~v~~~l~~--~~~DvIIvlsH~G~~~d~-----~~~~~~ 209 (282)
T cd07407 137 RYRKFTTKHGLRVLAFGFLFDFKGAANGVTVQPVADVVQEPWFQDAINN--EDVDLILVLGHMPVRDDA-----EFKVLH 209 (282)
T ss_pred ceEEEEcCCCcEEEEEEEecccccCCCCcEEcCHHHHHHHHHHHHHHHh--cCCCEEEEEeCCCCCCCc-----cHHHHH
Confidence 576667654544 666643211 111 1 2344577777753 345789999998865331 111111
Q ss_pred HHHHHhhhCCceeEEEcCccCCC
Q 003314 592 KHLICDYLKGRCKLRIAGDMHHY 614 (831)
Q Consensus 592 ~~Lie~~L~~RV~LvLAGHiHhY 614 (831)
.. +.+.++...++.|+||.|..
T Consensus 210 ~~-la~~~~~id~~Ii~GHsH~~ 231 (282)
T cd07407 210 DA-IRKIFPDTPIQFLGGHSHVR 231 (282)
T ss_pred HH-HHHhCCCCCEEEEeCCcccc
Confidence 12 23322343448999999974
No 68
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=94.90 E-value=0.41 Score=60.99 Aligned_cols=46 Identities=15% Similarity=0.035 Sum_probs=28.9
Q ss_pred CCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 003314 564 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (831)
Q Consensus 564 ~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYq 615 (831)
.-|-||+++|...-..... .......+.+++ ..|+++|+||.|...
T Consensus 838 ~~D~VV~LsH~G~~~d~~~----~~~~~~~lA~~v--~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 838 KVDAIIALTHLGSNQDRTT----GEITGLELAKKV--KGVDAIISAHTHTLV 883 (1163)
T ss_pred CCCEEEEEecCCccccccc----cccHHHHHHHhC--CCCCEEEeCCCCccc
Confidence 4579999999986432110 011123444444 359999999999754
No 69
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=94.27 E-value=1.9 Score=46.50 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCCCCcccccCccc-hhhHHHHHHhhhCCceeEEEcCccCCCce
Q 003314 564 ERDSVIIMTHEPNWLLDWYFNNVS-GKNVKHLICDYLKGRCKLRIAGDMHHYMR 616 (831)
Q Consensus 564 ~~d~VIL~tHeP~w~~~~~~~~~t-~~~l~~Lie~~L~~RV~LvLAGHiHhYqR 616 (831)
.-|-||+++|-..-........+. ......++.+. ..+++++|+||.|....
T Consensus 191 ~~D~IIvL~H~G~~~~~~~~~~~~~~~~~~~l~~~~-~~~iD~IlgGHsH~~~~ 243 (288)
T cd07412 191 GVDAIVVLAHEGGSTKGGDDTCSAASGPIADIVNRL-DPDVDVVFAGHTHQAYN 243 (288)
T ss_pred CCCEEEEEeCCCCCCCCCCccccccChhHHHHHhhc-CCCCCEEEeCccCcccc
Confidence 457899999987654322111000 01122333332 35799999999997654
No 70
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=94.05 E-value=0.048 Score=53.85 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=14.4
Q ss_pred cCCccEEEEcccccCCCC
Q 003314 420 LPRGDVLLIGGDLAYPNP 437 (831)
Q Consensus 420 lPrgdfLVlgGDlvYP~g 437 (831)
.+.+|.|+++||++....
T Consensus 40 ~~~~d~vi~~GDl~~~~~ 57 (168)
T cd07390 40 VGPDDTVYHLGDFSFGGK 57 (168)
T ss_pred cCCCCEEEEeCCCCCCCC
Confidence 345799999999988654
No 71
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=93.99 E-value=0.045 Score=54.15 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=12.5
Q ss_pred CccEEEEcccccCCC
Q 003314 422 RGDVLLIGGDLAYPN 436 (831)
Q Consensus 422 rgdfLVlgGDlvYP~ 436 (831)
++|.|+++||++...
T Consensus 41 ~~d~lii~GDl~~~~ 55 (172)
T cd07391 41 GPERLIILGDLKHSF 55 (172)
T ss_pred CCCEEEEeCcccccc
Confidence 479999999999643
No 72
>PRK04036 DNA polymerase II small subunit; Validated
Probab=93.77 E-value=0.065 Score=62.37 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=29.7
Q ss_pred CCCeEEEEEeecCCCCCCchHHHHHhcccccccccCCCCcccCCccEEEEcccccC
Q 003314 379 KEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAY 434 (831)
Q Consensus 379 ~~~~wFd~VgDtGDG~dStYtVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvY 434 (831)
+++.++.+++|+.-|.+....-+-.+-...++-..+++...-.+++.+|++||++-
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd 296 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVD 296 (504)
T ss_pred CCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccc
Confidence 56789999999996654322211111111111000001011346789999999983
No 73
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=93.75 E-value=1.7 Score=46.89 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=29.7
Q ss_pred CCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 003314 564 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (831)
Q Consensus 564 ~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYq 615 (831)
.-|-||+++|-........... ......+.+++....++++|+||.|...
T Consensus 173 ~~D~VI~lsH~G~~~~~~~~~~--~~~~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 173 KPDIVIAATHMGHYDNGEHGSN--APGDVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred CCCEEEEEecccccCCcccccc--CchHHHHHHhcCCCCCCEEEeCCCCccc
Confidence 4578999999887533211111 0111233333323579999999999754
No 74
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=92.71 E-value=2 Score=50.02 Aligned_cols=119 Identities=19% Similarity=0.163 Sum_probs=64.0
Q ss_pred EeCCCCCCCCChHHHHHHhhccc--cC-Ccc------ccCCCcceEEEEcCC-cEEEEEEecCCC---------CCCC-H
Q 003314 489 IIPGNHDWFDGLNTFMRFICHKS--WL-GGW------FMPQKKSYFALQLPK-GWWVFGLDLALH---------CDID-V 548 (831)
Q Consensus 489 AIPGNHDWyDGL~aFlr~F~~r~--~l-gGW------~mpQ~~SYFAlrLp~-~wWLiGLDtql~---------gdID-~ 548 (831)
...||||..-|++.+.+..-+-. ++ +.. ..+.-.+|.-++.+. ..=++|+.+... .++. .
T Consensus 107 ~tiGNHEFd~g~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~~~~~~~~f~ 186 (517)
T COG0737 107 MTLGNHEFDYGLEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNAIEGVTFR 186 (517)
T ss_pred EeecccccccCHHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccccccccccCCcEEc
Confidence 47799999999888888754322 11 111 112223587777764 245778775211 1111 1
Q ss_pred HHHHHHHHHHHhhcCC--CCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCC
Q 003314 549 YQFKFFAELVKEQVGE--RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (831)
Q Consensus 549 ~Q~~wFe~ll~~~v~~--~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhY 614 (831)
...+...+.+.+ +.. -|-||+++|-+.-............ + ...+ ..+++.++||.|++
T Consensus 187 d~~e~~~~~i~e-lk~~~vD~iI~LsH~G~~~d~~~~~~~~~~-~-~~~~----~~iD~i~~GH~H~~ 247 (517)
T COG0737 187 DPIEAAKKYIPE-LKGEGVDVIIALSHLGIEDDLELASEVPGD-V-DVAV----PGIDLIIGGHSHTV 247 (517)
T ss_pred CHHHHHHHHHHH-HHhcCCCEEEEEeccCcCcccccccccccc-c-cccc----cCcceEeccCCccc
Confidence 223344443332 222 4799999999976543221111000 0 0001 23999999999975
No 75
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=92.22 E-value=0.13 Score=53.48 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=14.0
Q ss_pred CceeEEEcCccCCCceee
Q 003314 601 GRCKLRIAGDMHHYMRHS 618 (831)
Q Consensus 601 ~RV~LvLAGHiHhYqR~~ 618 (831)
...+++++||.|.+....
T Consensus 190 ~~p~vii~Gh~h~~~~~~ 207 (243)
T cd07386 190 EVPDILHTGHVHVYGVGV 207 (243)
T ss_pred CCCCEEEECCCCchHhEE
Confidence 467899999999765543
No 76
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=91.87 E-value=2.4 Score=49.91 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=29.7
Q ss_pred CCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 003314 564 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (831)
Q Consensus 564 ~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYq 615 (831)
.-|-||+++|.-........ . +.+.-..+.+++-...|+++|+||.|.+-
T Consensus 209 ~~D~IV~LsH~G~~~~~~~~-~-~~~~d~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 209 KPDVIIALTHMGHYDDGEHG-S-NAPGDVEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred CCCEEEEEeccccccCCccC-C-CCccHHHHHHhCCccCceEEEeCCCCccc
Confidence 35789999998875432111 1 11111244444422489999999999753
No 77
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=91.85 E-value=0.52 Score=46.92 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=31.4
Q ss_pred eEEEEecCCCCCcccccC--------ccchhhHHHHHHhhhCCceeEEEcCccC-CCcee
Q 003314 567 SVIIMTHEPNWLLDWYFN--------NVSGKNVKHLICDYLKGRCKLRIAGDMH-HYMRH 617 (831)
Q Consensus 567 ~VIL~tHeP~w~~~~~~~--------~~t~~~l~~Lie~~L~~RV~LvLAGHiH-hYqR~ 617 (831)
.-||+||+|+..-....+ ....+.+++++++. |.+..+|||.| .|+|-
T Consensus 70 ~DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~l---kPrYhf~gh~~~fyer~ 126 (150)
T cd07380 70 VDILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKL---KPRYHFAGLEGVFYERE 126 (150)
T ss_pred CCEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHc---CCCeEeecCCCceEeec
Confidence 449999999976422111 11124456666665 89999999999 67763
No 78
>PRK09453 phosphodiesterase; Provisional
Probab=91.69 E-value=0.24 Score=49.39 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=11.7
Q ss_pred CccEEEEcccccCC
Q 003314 422 RGDVLLIGGDLAYP 435 (831)
Q Consensus 422 rgdfLVlgGDlvYP 435 (831)
++|.++++||++.-
T Consensus 27 ~~d~ii~lGDi~~~ 40 (182)
T PRK09453 27 GADWLVHLGDVLYH 40 (182)
T ss_pred CCCEEEEccccccc
Confidence 57899999998753
No 79
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=91.10 E-value=2.5 Score=49.92 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=56.7
Q ss_pred EEEeCCCCCCCCChHHHHHHhhccc--cC-Ccc--c-----cCCCcceEEEEcCC-cEEEEEEecCCC--------CCC-
Q 003314 487 CYIIPGNHDWFDGLNTFMRFICHKS--WL-GGW--F-----MPQKKSYFALQLPK-GWWVFGLDLALH--------CDI- 546 (831)
Q Consensus 487 vfAIPGNHDWyDGL~aFlr~F~~r~--~l-gGW--~-----mpQ~~SYFAlrLp~-~wWLiGLDtql~--------gdI- 546 (831)
=.+++||||+=-|.+.+.+..-+-. ++ +.. . .+.-.+|-.++... ..=++|+.+... .++
T Consensus 84 Da~~lGNHEFd~G~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~ 163 (550)
T TIGR01530 84 DFFTLGNHEFDAGNEGLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIK 163 (550)
T ss_pred CEEEeccccccCCHHHHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceE
Confidence 4568999997557666555432211 11 111 0 01223565555532 366888865211 011
Q ss_pred --CHH--HHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 003314 547 --DVY--QFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (831)
Q Consensus 547 --D~~--Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYq 615 (831)
|.. -.++.++ +++ +.-|-||+++|--.- .+ ..+.+++ ..++++|+||.|.+-
T Consensus 164 f~d~~~~~~~~v~~-Lk~--~g~D~II~lsH~g~~----------~d--~~la~~~--~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 164 FIDEIAAAQIAANA-LKQ--QGINKIILLSHAGFE----------KN--CEIAQKI--NDIDVIVSGDSHYLL 219 (550)
T ss_pred ECCHHHHHHHHHHH-HHh--CCCCEEEEEecCCcH----------HH--HHHHhcC--CCCCEEEeCCCCccc
Confidence 211 1122222 222 224789999997521 00 1232333 369999999999853
No 80
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=90.44 E-value=0.7 Score=53.83 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=31.9
Q ss_pred CCCeEEEEEeecC-CCCC-CchHHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCCh
Q 003314 379 KEDLWFDFMADTG-DGGN-SSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 439 (831)
Q Consensus 379 ~~~~wFd~VgDtG-DG~d-StYtVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~ 439 (831)
...+.|...||++ +|+. .-|+..+.|++. .+||+||.||-+|-.|-.
T Consensus 137 ~~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~--------------~~D~viH~GDyIYeyg~~ 185 (522)
T COG3540 137 GRAIRFVWFADASCQGWEIGYMTAYKTMAKE--------------EPDFVIHLGDYIYEYGPI 185 (522)
T ss_pred CCcchhhhhhhccccccccchhHHHHHHHhc--------------CCCEEEEcCCeeeccCCc
Confidence 3455666666665 5544 355777777763 279999999999987643
No 81
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=89.28 E-value=6.2 Score=41.06 Aligned_cols=132 Identities=13% Similarity=0.081 Sum_probs=65.4
Q ss_pred CCeEEEeCCCCCCCCChHHHHHHh--hcccc---CC-ccccCCCcceEEEEcCC-cEEEEEEecCCCCCCC---------
Q 003314 484 GPQCYIIPGNHDWFDGLNTFMRFI--CHKSW---LG-GWFMPQKKSYFALQLPK-GWWVFGLDLALHCDID--------- 547 (831)
Q Consensus 484 gP~vfAIPGNHDWyDGL~aFlr~F--~~r~~---lg-GW~mpQ~~SYFAlrLp~-~wWLiGLDtql~gdID--------- 547 (831)
+..+..+-+||++=-|.+++.+-. .++.. .+ +-...+...|..++.+. ..-++|+-+.......
T Consensus 77 G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~~~ 156 (239)
T cd07381 77 GFDVVSLANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGTNGIPLAAGARPGGV 156 (239)
T ss_pred CCCEEEcccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCCCCCcCcccCCcccc
Confidence 455777777999866666655532 11211 11 11111112354555543 2456666543322111
Q ss_pred -HHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceeeec
Q 003314 548 -VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 620 (831)
Q Consensus 548 -~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~~~ 620 (831)
..-.+-+.+.+++..+..|-||+.+|--. +. ........+.+.+.+....+++++.||.|..+..+..
T Consensus 157 ~~~~~~~~~~~i~~lr~~~D~vIv~~H~G~---e~--~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E~~ 225 (239)
T cd07381 157 NPLDLERIAADIAEAKKKADIVIVSLHWGV---EY--SYYPTPEQRELARALIDAGADLVIGHHPHVLQGIEIY 225 (239)
T ss_pred CccCHHHHHHHHHHHhhcCCEEEEEecCcc---cC--CCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCeEEE
Confidence 00012233333221123678999999422 11 1111222334444544568999999999998887753
No 82
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=89.16 E-value=11 Score=39.50 Aligned_cols=52 Identities=13% Similarity=0.060 Sum_probs=32.7
Q ss_pred CCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceeeecC
Q 003314 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVP 621 (831)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~~~~ 621 (831)
-|-||+++|--.- .. ..+ .+..+++.+++....++++++||.|..+..+..+
T Consensus 173 ~D~vIv~~H~G~e-~~---~~p-~~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e~~~ 224 (239)
T smart00854 173 ADVVIVSLHWGVE-YQ---YEP-TDEQRELAHALIDAGADVVIGHHPHVLQPIEIYK 224 (239)
T ss_pred CCEEEEEecCccc-cC---CCC-CHHHHHHHHHHHHcCCCEEEcCCCCcCCceEEEC
Confidence 5788999986541 11 111 1223344455444579999999999988877543
No 83
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=88.50 E-value=5.5 Score=43.93 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=25.3
Q ss_pred CCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCc
Q 003314 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (831)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYq 615 (831)
-|-||+++|--.+..+ ..+.+++ ..++++|.||.|.+.
T Consensus 208 vD~II~LsH~g~~~~d-----------~~lA~~v--~gIDvIigGHsH~~l 245 (313)
T cd08162 208 INKIILLSHLQQISIE-----------QALAALL--SGVDVIIAGGSNTLL 245 (313)
T ss_pred CCEEEEEecccccchH-----------HHHHhcC--CCCCEEEeCCCCccC
Confidence 4789999998533211 1233333 369999999999864
No 84
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=88.34 E-value=1.5 Score=44.84 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=29.2
Q ss_pred cCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCC
Q 003314 562 VGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (831)
Q Consensus 562 v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHh 613 (831)
+.-++..|++.|-|.=..+. . +.+.+ +.+++.+|++.|-||.|.
T Consensus 104 ie~dg~~~~LsHyP~~~~~~--~---~~~~r---~~y~~~~~~llIHGH~H~ 147 (186)
T COG4186 104 IEWDGEDVYLSHYPRPGQDH--P---GMESR---FDYLRLRVPLLIHGHLHS 147 (186)
T ss_pred eeECCeEEEEEeCCCCCCCC--c---chhhh---HHHHhccCCeEEeccccc
Confidence 33466789999999744331 1 11121 345578999999999997
No 85
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=87.26 E-value=9.9 Score=45.88 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=27.8
Q ss_pred CCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCC
Q 003314 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (831)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhY 614 (831)
-|-||+++|...-.. .+ .+..+|....++++ ..|+++++||.|..
T Consensus 196 aDvII~LsH~G~~~d-~~--~~~~en~~~~l~~v--~gID~Il~GHsH~~ 240 (626)
T TIGR01390 196 ADIIVALAHSGISAD-PY--QPGAENSAYYLTKV--PGIDAVLFGHSHAV 240 (626)
T ss_pred CCEEEEEeccCcCCC-cc--ccccchHHHHHhcC--CCCCEEEcCCCCcc
Confidence 468999999875432 11 11223333333443 46999999999974
No 86
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=86.98 E-value=16 Score=39.91 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCC
Q 003314 554 FAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (831)
Q Consensus 554 Fe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHh 613 (831)
.++++++.....|-+||..|.-. +.....+..++.+||++++.-|+|=
T Consensus 133 ~d~~i~~lk~~~d~IIVd~Haea------------tsEK~a~~~~ldg~vsaVvGtHtHV 180 (266)
T TIGR00282 133 LKELINMLKKDCDLIFVDFHAET------------TSEKNAFGMAFDGYVTAVVGTHTHV 180 (266)
T ss_pred HHHHHHhhhcCCCEEEEEeCCCC------------HHHHHHHHHHhCCCccEEEeCCCCC
Confidence 44444422223468999999654 1123335666689999999999994
No 87
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=85.40 E-value=4.7 Score=41.21 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=25.6
Q ss_pred CCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCC
Q 003314 564 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (831)
Q Consensus 564 ~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHh 613 (831)
-++..|.++|-=.+.... +...+..+-++ ..+++++.||+|-
T Consensus 79 ~~g~ki~l~HGh~~~~~~-----~~~~l~~la~~---~~~Dvli~GHTH~ 120 (172)
T COG0622 79 VGGVKIFLTHGHLYFVKT-----DLSLLEYLAKE---LGADVLIFGHTHK 120 (172)
T ss_pred ECCEEEEEECCCcccccc-----CHHHHHHHHHh---cCCCEEEECCCCc
Confidence 356789999974443110 12223333233 4799999999995
No 88
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=83.97 E-value=0.9 Score=46.37 Aligned_cols=18 Identities=39% Similarity=0.545 Sum_probs=13.9
Q ss_pred CCccEEEEcccccCCCCC
Q 003314 421 PRGDVLLIGGDLAYPNPS 438 (831)
Q Consensus 421 PrgdfLVlgGDlvYP~gs 438 (831)
++.|.++++||++.-++.
T Consensus 27 ~~~d~~~~~GD~v~~g~~ 44 (207)
T cd07424 27 PARDRLISVGDLIDRGPE 44 (207)
T ss_pred CCCCEEEEeCCcccCCCC
Confidence 357999999998875543
No 89
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=81.62 E-value=1.2 Score=46.97 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=13.0
Q ss_pred CccEEEEcccccCCCC
Q 003314 422 RGDVLLIGGDLAYPNP 437 (831)
Q Consensus 422 rgdfLVlgGDlvYP~g 437 (831)
++|.|+++||+.....
T Consensus 58 ~~d~vIi~GDl~h~~~ 73 (225)
T TIGR00024 58 GIEALIINGDLKHEFK 73 (225)
T ss_pred CCCEEEEcCccccccC
Confidence 4789999999986544
No 90
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=80.95 E-value=17 Score=44.15 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=26.9
Q ss_pred CCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCC
Q 003314 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (831)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhY 614 (831)
-|-||+++|--.-. +.+ .+..+|....++++ ..++++|.||.|..
T Consensus 219 aDvII~LsH~G~~~-d~~--~~~aen~~~~l~~v--~gID~Il~GHsH~~ 263 (649)
T PRK09420 219 ADIVVAIPHSGISA-DPY--KAMAENSVYYLSEV--PGIDAIMFGHSHAV 263 (649)
T ss_pred CCEEEEEecCCcCC-CCc--cccccchhHHHhcC--CCCCEEEeCCCCcc
Confidence 46888999987532 211 11223332223333 46999999999975
No 91
>PHA02239 putative protein phosphatase
Probab=80.71 E-value=1.1 Score=47.64 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=12.3
Q ss_pred ccEEEEcccccCCCCC
Q 003314 423 GDVLLIGGDLAYPNPS 438 (831)
Q Consensus 423 gdfLVlgGDlvYP~gs 438 (831)
.|.|+++||++--++.
T Consensus 30 ~d~li~lGD~iDrG~~ 45 (235)
T PHA02239 30 EETIVFLGDYVDRGKR 45 (235)
T ss_pred CCEEEEecCcCCCCCC
Confidence 5889999997765543
No 92
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=77.43 E-value=2.1 Score=49.19 Aligned_cols=49 Identities=29% Similarity=0.415 Sum_probs=30.6
Q ss_pred CccEEEEcccccCCC--CChhhhhcccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCC
Q 003314 422 RGDVLLIGGDLAYPN--PSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDW 496 (831)
Q Consensus 422 rgdfLVlgGDlvYP~--gs~e~Y~~Rf~~PYe~Al~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDW 496 (831)
.||+++++||+.=-+ ...+++..+..+ +...+++ | ...++.-||||||+
T Consensus 93 kPdvvffLGDLfDeG~~~~~eEf~~~~~R-fkkIf~~------------k-------------~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 93 KPDVVFFLGDLFDEGQWAGDEEFKKRYER-FKKIFGR------------K-------------GNIKVIYIAGNHDI 143 (410)
T ss_pred CCCEEEEeccccccCccCChHHHHHHHHH-HHHhhCC------------C-------------CCCeeEEeCCcccc
Confidence 479999999965422 345666654433 4444331 1 12348999999997
No 93
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=76.49 E-value=1.9 Score=46.36 Aligned_cols=47 Identities=32% Similarity=0.345 Sum_probs=32.6
Q ss_pred CccEEEEcccccCCCCChhhhhcccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCCCCC
Q 003314 422 RGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDW 496 (831)
Q Consensus 422 rgdfLVlgGDlvYP~gs~e~Y~~Rf~~PYe~Al~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGNHDW 496 (831)
+++-||+.||+-...+-....+.++++-+..++. ...+..|+||||=
T Consensus 63 ~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~----------------------------~~evi~i~GNHD~ 109 (235)
T COG1407 63 GPKRLIILGDLKHEFGKSLRQEKEEVREFLELLD----------------------------EREVIIIRGNHDN 109 (235)
T ss_pred CCCEEEEcCccccccCccccccHHHHHHHHHHhc----------------------------cCcEEEEeccCCC
Confidence 5788999999877665544555555555555432 2249999999995
No 94
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=74.92 E-value=2 Score=50.21 Aligned_cols=57 Identities=28% Similarity=0.524 Sum_probs=35.0
Q ss_pred ccCCccEEEEccccc-----CCCCChhhhhcccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCeEEEeCCC
Q 003314 419 TLPRGDVLLIGGDLA-----YPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGN 493 (831)
Q Consensus 419 ~lPrgdfLVlgGDlv-----YP~gs~e~Y~~Rf~~PYe~Al~~~~~~~~e~i~~~kpelp~~~~~l~~~~gP~vfAIPGN 493 (831)
.-+|-+.++.+||+| ||+-..+-...--+++|+.+-.- . +..| +-+.++++|||
T Consensus 259 ~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~--------L----~~vp---------~~I~v~i~PGn 317 (481)
T COG1311 259 LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEF--------L----DQVP---------EHIKVFIMPGN 317 (481)
T ss_pred cccceEEEEEecccccccccccCcccccccccchHHHHHHHHH--------H----hhCC---------CCceEEEecCC
Confidence 345778899999985 77654433333334556554320 0 1222 34679999999
Q ss_pred CCC
Q 003314 494 HDW 496 (831)
Q Consensus 494 HDW 496 (831)
||-
T Consensus 318 hDa 320 (481)
T COG1311 318 HDA 320 (481)
T ss_pred CCc
Confidence 996
No 95
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=74.89 E-value=2.4 Score=46.07 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=14.7
Q ss_pred CCccEEEEcccccCCCCCh
Q 003314 421 PRGDVLLIGGDLAYPNPSA 439 (831)
Q Consensus 421 PrgdfLVlgGDlvYP~gs~ 439 (831)
|..|.++++||++--++..
T Consensus 27 ~~~D~li~lGDlVdrGp~s 45 (275)
T PRK00166 27 PAKDTLWLVGDLVNRGPDS 45 (275)
T ss_pred CCCCEEEEeCCccCCCcCH
Confidence 3568999999988866543
No 96
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=74.72 E-value=45 Score=41.68 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=28.2
Q ss_pred CCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCce
Q 003314 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 616 (831)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR 616 (831)
-|-||+++|.-.-... .. ...++....++++ ..|+++|+||.|..-.
T Consensus 245 aDvIIaLsH~G~~~d~-~~--~~~ena~~~l~~v--~gID~IlgGHsH~~~~ 291 (780)
T PRK09418 245 ADVIVALAHSGVDKSG-YN--VGMENASYYLTEV--PGVDAVLMGHSHTEVK 291 (780)
T ss_pred CCEEEEEeccCccccc-cc--ccchhhhHHHhcC--CCCCEEEECCCCCccc
Confidence 4688999998754321 11 1123332223333 4699999999998643
No 97
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=72.91 E-value=2.3 Score=44.20 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=14.9
Q ss_pred CCccEEEEcccccCCCCCh
Q 003314 421 PRGDVLLIGGDLAYPNPSA 439 (831)
Q Consensus 421 PrgdfLVlgGDlvYP~gs~ 439 (831)
+..|.++.+||++.-++..
T Consensus 41 ~~~d~l~~lGD~vdrG~~~ 59 (218)
T PRK09968 41 PETDLLISVGDNIDRGPES 59 (218)
T ss_pred CCCCEEEECCCCcCCCcCH
Confidence 4578999999999866544
No 98
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=67.83 E-value=97 Score=32.72 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=72.1
Q ss_pred CCCeEEEeCCCCCCCCChHHHHHH---hhccc--cCC-ccccCCCcceEEEEcCC-cEEEEEEecCCCCC----------
Q 003314 483 DGPQCYIIPGNHDWFDGLNTFMRF---ICHKS--WLG-GWFMPQKKSYFALQLPK-GWWVFGLDLALHCD---------- 545 (831)
Q Consensus 483 ~gP~vfAIPGNHDWyDGL~aFlr~---F~~r~--~lg-GW~mpQ~~SYFAlrLp~-~wWLiGLDtql~gd---------- 545 (831)
-+..+..+--||-+=-|.+++.+- +-+.. +.| |....+.+.+..++.+. ..-+++.-......
T Consensus 74 ~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~ 153 (250)
T PF09587_consen 74 AGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYG 153 (250)
T ss_pred cCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCCCCCcccccccccc
Confidence 346688888899654354444443 22111 122 22222333445555543 24455554332110
Q ss_pred -----------CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCC
Q 003314 546 -----------IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (831)
Q Consensus 546 -----------ID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhY 614 (831)
..+++.+.+.+.+++..+..|-|||+.|- ... +...+ .+..+++.+.+....+++++.+|.|..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv~~Hw-G~e---~~~~p-~~~q~~~a~~lidaGaDiIiG~HpHv~ 228 (250)
T PF09587_consen 154 FSYRPDKAGLNPNRPGIERIKEDIREARKKADVVIVSLHW-GIE---YENYP-TPEQRELARALIDAGADIIIGHHPHVI 228 (250)
T ss_pred ccccccccccccccchHHHHHHHHHHHhcCCCEEEEEecc-CCC---CCCCC-CHHHHHHHHHHHHcCCCEEEeCCCCcc
Confidence 01233466777665434567889999986 111 11112 233445555555668999999999998
Q ss_pred ceeeecC
Q 003314 615 MRHSYVP 621 (831)
Q Consensus 615 qR~~~~~ 621 (831)
|..+...
T Consensus 229 q~~E~y~ 235 (250)
T PF09587_consen 229 QPVEIYK 235 (250)
T ss_pred cceEEEC
Confidence 8887553
No 99
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=66.26 E-value=5.2 Score=43.22 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=14.6
Q ss_pred CCccEEEEcccccCCCCCh
Q 003314 421 PRGDVLLIGGDLAYPNPSA 439 (831)
Q Consensus 421 PrgdfLVlgGDlvYP~gs~ 439 (831)
|..|.++++||++--++..
T Consensus 25 ~~~D~Li~lGDlVdRGp~s 43 (257)
T cd07422 25 PAKDRLWLVGDLVNRGPDS 43 (257)
T ss_pred CCCCEEEEecCcCCCCcCH
Confidence 4578999999988766544
No 100
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=64.97 E-value=55 Score=42.45 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=28.9
Q ss_pred CCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCce
Q 003314 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 616 (831)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR 616 (831)
-|-||+++|-..=..... . ...+....+.++. ..++++++||.|....
T Consensus 235 aDvII~l~H~G~~~~~~~-~-~~en~~~~la~~~--~gID~Il~GHsH~~~~ 282 (1163)
T PRK09419 235 ADVIVALAHSGIESEYQS-S-GAEDSVYDLAEKT--KGIDAIVAGHQHGLFP 282 (1163)
T ss_pred CCEEEEEeccCcCCCCCC-C-CcchHHHHHHHhC--CCCcEEEeCCCccccc
Confidence 478999999885332111 0 1112233444443 4699999999998654
No 101
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=62.25 E-value=16 Score=39.16 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=17.6
Q ss_pred CeEEEeCCCCCCCCChHHHHHHhhc
Q 003314 485 PQCYIIPGNHDWFDGLNTFMRFICH 509 (831)
Q Consensus 485 P~vfAIPGNHDWyDGL~aFlr~F~~ 509 (831)
+.++.|||| .|+.+|..-|.+
T Consensus 3 ~li~~IPGN----PGlv~fY~~Fl~ 23 (266)
T PF10230_consen 3 PLIVFIPGN----PGLVEFYEEFLS 23 (266)
T ss_pred EEEEEECCC----CChHHHHHHHHH
Confidence 469999999 899988887754
No 102
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=60.52 E-value=6.3 Score=39.92 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=12.9
Q ss_pred CCccEEEEcccccCCCC
Q 003314 421 PRGDVLLIGGDLAYPNP 437 (831)
Q Consensus 421 PrgdfLVlgGDlvYP~g 437 (831)
+..|.+|++||++--++
T Consensus 23 ~~~d~li~lGD~vdrg~ 39 (225)
T cd00144 23 PPNDKLIFLGDYVDRGP 39 (225)
T ss_pred CCCCEEEEECCEeCCCC
Confidence 35788999999776544
No 103
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=58.04 E-value=14 Score=40.14 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=31.7
Q ss_pred EEEEeecCCCCCCchHHHHHhcccccccccC--CCCcccCCccEEEEcccccCCCCC
Q 003314 384 FDFMADTGDGGNSSYSVARLLAQPHIRVTRD--DSVFTLPRGDVLLIGGDLAYPNPS 438 (831)
Q Consensus 384 Fd~VgDtGDG~dStYtVArLmAqp~L~v~~~--~~~~~lPrgdfLVlgGDlvYP~gs 438 (831)
..+|+|++=|.+.....+-.+-+..|+-..+ ++...-.+-.-||++||.+-+.+.
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~ 58 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQ 58 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCccccccc
Confidence 5688999877776555554444444432111 111112344569999999887654
No 104
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=57.44 E-value=6.5 Score=40.79 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=25.6
Q ss_pred EEEEEeecCCCCCCch-HHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCCh
Q 003314 383 WFDFMADTGDGGNSSY-SVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 439 (831)
Q Consensus 383 wFd~VgDtGDG~dStY-tVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs~ 439 (831)
.+.+|||.= | .| +..+++++-. . .|+.|-|+.+||++=-++..
T Consensus 18 ri~vigDIH-G---~~~~L~~lL~~i~--~--------~~~~D~li~lGDlvDrGp~s 61 (218)
T PRK11439 18 HIWLVGDIH-G---CFEQLMRKLRHCR--F--------DPWRDLLISVGDLIDRGPQS 61 (218)
T ss_pred eEEEEEccc-C---CHHHHHHHHHhcC--C--------CcccCEEEEcCcccCCCcCH
Confidence 578888882 2 23 2444444321 1 24578899999988555543
No 105
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=56.24 E-value=8.2 Score=40.86 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=26.6
Q ss_pred EEEEEeecCCCCCCch-HHHHHhcccccccccCCCCcccCCccEEEEcccccCCCCC
Q 003314 383 WFDFMADTGDGGNSSY-SVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPS 438 (831)
Q Consensus 383 wFd~VgDtGDG~dStY-tVArLmAqp~L~v~~~~~~~~lPrgdfLVlgGDlvYP~gs 438 (831)
.+.+|||.= | .| +..+++.+-..+. .++....|..|.++++||++=-++.
T Consensus 2 ~~~vIGDIH-G---~~~~L~~lL~~~~~~~--~~~~~~~~~~d~li~lGDliDRGp~ 52 (245)
T PRK13625 2 KYDIIGDIH-G---CYQEFQALTEKLGYNW--SSGLPVHPDQRKLAFVGDLTDRGPH 52 (245)
T ss_pred ceEEEEECc-c---CHHHHHHHHHHcCCCc--ccCcccCCCCCEEEEECcccCCCcC
Confidence 367888882 3 33 3555554321111 0111123556889999997765543
No 106
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=53.30 E-value=78 Score=39.91 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=25.9
Q ss_pred CCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCC
Q 003314 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (831)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhY 614 (831)
-|-||+++|.-.- .+... ...+|....+.++ ..||+++.||.|..
T Consensus 310 aDvIIaLsH~G~~-~d~~~--~~~En~~~~LA~v--~GIDaIvgGHsH~~ 354 (814)
T PRK11907 310 ADIVLVLSHSGIG-DDQYE--VGEENVGYQIASL--SGVDAVVTGHSHAE 354 (814)
T ss_pred CCEEEEEeCCCcc-ccccc--ccccchhhHHhcC--CCCCEEEECCCCCc
Confidence 4678888887643 22211 1122332222332 46999999999974
No 107
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=52.89 E-value=11 Score=39.54 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=14.2
Q ss_pred CCccEEEEcccccCCCCCh
Q 003314 421 PRGDVLLIGGDLAYPNPSA 439 (831)
Q Consensus 421 PrgdfLVlgGDlvYP~gs~ 439 (831)
|..|.++.+||++--++..
T Consensus 36 ~~~d~lv~lGDlIDrG~~s 54 (234)
T cd07423 36 PEGRRAVFVGDLVDRGPDS 54 (234)
T ss_pred CCCCEEEEECCccCCCCCH
Confidence 3568999999988765543
No 108
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=46.87 E-value=99 Score=37.66 Aligned_cols=125 Identities=19% Similarity=0.235 Sum_probs=70.6
Q ss_pred ccCCCCeEEEeCCCCCCCCChHH------HHHHhhcccc---C---C--ccccCCCcceEEEEcCCcEEEEEEec-----
Q 003314 480 KQYDGPQCYIIPGNHDWFDGLNT------FMRFICHKSW---L---G--GWFMPQKKSYFALQLPKGWWVFGLDL----- 540 (831)
Q Consensus 480 ~~~~gP~vfAIPGNHDWyDGL~a------Flr~F~~r~~---l---g--GW~mpQ~~SYFAlrLp~~wWLiGLDt----- 540 (831)
..|+.+ ..|||+.|.+-.+ |+..+..+-- + . +=..|--.+|+.+-.|++..+..+..
T Consensus 121 ~~yD~l----~lGNHEl~~~~ve~l~~~~f~~~~k~~~la~Nv~~~~~~~~~~p~~~~~~t~~t~~~~~v~~vG~~~~~f 196 (602)
T KOG4419|consen 121 MPYDIL----TLGNHELYQANVENLTEEYFLPAWKGPYLASNVQIFDSSNSFVPFGLEYATFLTPHGVVVLAVGFLCASF 196 (602)
T ss_pred Cccchh----hhcchhhhhhhhhccchhhhhhhhccceeecceEEecCchhhccccccceEEeccCceEEEEEEEeeccc
Confidence 345566 7899999877211 3333221110 0 1 11233334688888888865555433
Q ss_pred CCCC-CC-C-----HHHHHHHHHHHHhhcCCCCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeE-EEcCccC
Q 003314 541 ALHC-DI-D-----VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKL-RIAGDMH 612 (831)
Q Consensus 541 ql~g-dI-D-----~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~L-vLAGHiH 612 (831)
+.+. +. + -.|.+|..+.++. +.-+-+|++.|-|.=... +.+.+-..+++..+ .+++ ++.||.|
T Consensus 197 ~~~~n~~~v~~veei~~~~~~~~m~~~--~~idlii~lgH~~~~~~~------e~~~~~~~ir~~~p-~t~IqviGGHsh 267 (602)
T KOG4419|consen 197 SGAANRTVVVPVEEITQSEWEQDMVNT--TDIDLIIALGHSPVRDDD------EWKSLHAEIRKVHP-NTPIQVIGGHSH 267 (602)
T ss_pred cccCCCcccccHHHHhccchHHHHhhc--cCccEEEEecccccccch------hhhhHHHHHhhhCC-CCceEEECchhh
Confidence 2111 11 1 1588999998863 566788889998863221 23333333444433 3455 9999999
Q ss_pred --CCcee
Q 003314 613 --HYMRH 617 (831)
Q Consensus 613 --hYqR~ 617 (831)
.|.++
T Consensus 268 ird~a~~ 274 (602)
T KOG4419|consen 268 IRDFAVY 274 (602)
T ss_pred hhhhhhc
Confidence 47776
No 109
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=45.82 E-value=18 Score=37.87 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=12.0
Q ss_pred CccEEEEcccccCCCCC
Q 003314 422 RGDVLLIGGDLAYPNPS 438 (831)
Q Consensus 422 rgdfLVlgGDlvYP~gs 438 (831)
..|.+|++||++=-++.
T Consensus 33 ~~d~lvflGD~IDRGp~ 49 (222)
T cd07413 33 PERQVVFLGDLIDRGPE 49 (222)
T ss_pred CCCEEEEeCcccCCCCC
Confidence 46789999997633443
No 110
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=42.70 E-value=37 Score=36.93 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=57.3
Q ss_pred CCCCcchhHHHHHhhhheeeEecCcHHHHHHh-hcccchhhH-HHHHHHHHHHhhcCccccCccCCCccchhHHHHHHHH
Q 003314 29 YPHEHSRHAIIAVVVGCLFFISSDNMHTLIEK-LDNNIKWWS-MYACLLGFFYFFSSPFIGKTITPSYSNFSRWYIAWIL 106 (831)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~ 106 (831)
+|+||++|+-+..++.+...+..=-+-..+.. ++++. |+. ..+++.|++.|+=.=+|-.|+..+.....+...
T Consensus 8 ~~~er~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~-~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~---- 82 (301)
T PF14362_consen 8 SPAERNKYAGIGAAVLFTALLAGLSGGYALYTVFGGPV-WAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQ---- 82 (301)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHH----
Confidence 79999999987766544433222112222222 22222 444 345566666666556666666555443333222
Q ss_pred HHHHhhCccccccccccccchhHHHHHHHHHHHHHHHHH
Q 003314 107 VAAVYHLPSFQSMGVDLRMNLSLFLTIFLASVLFLLVFH 145 (831)
Q Consensus 107 ~a~~~h~p~~~~~g~~~r~~~s~~~~~~~~s~~~~~~~~ 145 (831)
+-.|.=|++.+-+-+|..+-|.+|+
T Consensus 83 --------------~~~R~~lAvliaivIs~pl~l~iF~ 107 (301)
T PF14362_consen 83 --------------ALPRLLLAVLIAIVISEPLELKIFE 107 (301)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357778888888999988888876
No 111
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=42.27 E-value=16 Score=40.22 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=15.2
Q ss_pred CCccEEEEcccccCCCCCh
Q 003314 421 PRGDVLLIGGDLAYPNPSA 439 (831)
Q Consensus 421 PrgdfLVlgGDlvYP~gs~ 439 (831)
|..|-++++||++--++..
T Consensus 27 ~~~D~l~~lGDlVdRGP~s 45 (279)
T TIGR00668 27 PGQDTLWLTGDLVARGPGS 45 (279)
T ss_pred CCCCEEEEeCCccCCCCCH
Confidence 4567899999999887754
No 112
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=31.54 E-value=39 Score=37.91 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=12.5
Q ss_pred CccEEEEcccccCCCCCh
Q 003314 422 RGDVLLIGGDLAYPNPSA 439 (831)
Q Consensus 422 rgdfLVlgGDlvYP~gs~ 439 (831)
..+.+|++||.+=-++..
T Consensus 34 ~~~~iVfLGDyVDRGPdS 51 (304)
T cd07421 34 ASALVIFLGDYCDRGPET 51 (304)
T ss_pred CCcEEEEeCCcCCCCCCH
Confidence 456899999966544543
No 113
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=30.42 E-value=1.5e+02 Score=34.30 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=44.5
Q ss_pred cCCCCeEEEEecC-CCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCceeeecCCCCCcccceEEEecCCCCC
Q 003314 562 VGERDSVIIMTHE-PNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAF 640 (831)
Q Consensus 562 v~~~d~VIL~tHe-P~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~~~~~~~G~~~~~~lIVsGGGGAf 640 (831)
..+.|-||+..|+ =.|..+.. +..+.+-++.....++++..+|-|+-|..+... +| .+|+ .+-|.|
T Consensus 221 ~k~adlviv~~HwG~ey~~~p~------~~q~~~a~~lidAGa~iIvGhhpHvlqpiE~~~-~~-----~~I~-YsLGnf 287 (372)
T COG2843 221 KKGADLVIVQPHWGVEYAYEPA------AGQRALARRLIDAGADIIVGHHPHVLQPIEIYI-QG-----KPIL-YSLGNF 287 (372)
T ss_pred hccCCEEEEeccccccccCCCc------HHHHHHHHHHHhcCcCeEecCCCCcCcceEEec-CC-----cEEE-Eeccce
Confidence 4567899999997 55554422 213344455555689999999999999988662 12 2344 767766
Q ss_pred CC
Q 003314 641 LH 642 (831)
Q Consensus 641 Lh 642 (831)
+-
T Consensus 288 ~f 289 (372)
T COG2843 288 LF 289 (372)
T ss_pred ec
Confidence 64
No 114
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=30.10 E-value=99 Score=31.32 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=24.4
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003314 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (831)
Q Consensus 535 LiGLDtql~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~ 576 (831)
++.||- +...+|....+.+.+.+.+..+.+..+|+++|+|.
T Consensus 146 llllDE-Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 146 LWILDE-PTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred EEEEeC-CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 556663 44556666667777766532333456777777665
No 115
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=28.69 E-value=5.9e+02 Score=29.42 Aligned_cols=134 Identities=14% Similarity=0.165 Sum_probs=66.6
Q ss_pred ccccCCChhhhhHHHhhhhhhhhhcccchhHHHHHHHHHHHHhhccccccccccccCccccchhhHHHHHHHHHHHHhh-
Q 003314 660 SKAAYPSFEDSSRIALGNILKFRKKNWQFDFIGGIVYFVLVFSMFPQCELNHILREDSFSGHLRSFFGTVWNAFMYVLE- 738 (831)
Q Consensus 660 ~~~~YP~~~~S~rl~~~nll~Fr~~Nw~F~~i~G~iy~ll~~s~~p~~~~~~iLr~dS~sg~L~sF~~~V~~al~~If~- 738 (831)
....|-+.+...+.++-.- .|+.++|+|.++.=+.-++.+..+... +.........-++-++...+.....
T Consensus 274 ~~~ly~d~~~l~~~G~LY~-~Y~~~~~~f~~~~~~~~~~~~~~ig~~-------q~~g~~Qv~~llv~e~~~l~~~~~~~ 345 (438)
T PF06011_consen 274 RSKLYDDPKTLLRWGFLYN-QYRPSRWWFFIVWLLYKFLRGIFIGFL-------QGSGIAQVIALLVIEVIYLILLFILR 345 (438)
T ss_pred hhhccCChhHHHHheeeHh-hcCcchhhhHHHHHHHHHHHHHheeee-------ccCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456777777777776663 799999998877666666554433211 1111011111111222211111111
Q ss_pred -------hhHHHHHH--HHHHHHHhhhccc-cccchhHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHhccc
Q 003314 739 -------HSYVSFAG--ALLLLIVAITFVP-SKLSRKKRAMIGVLHVSAHLAAALILM--LLLELGVETCIQHKL 801 (831)
Q Consensus 739 -------~SyvSl~g--~L~lli~~i~Fad-~~~gr~kr~~~G~lH~l~Hl~aA~~ll--LLlElgiE~ci~~~~ 801 (831)
+..-.... -++.++.++.|.+ -..++..|.++|.+--..|.+..++++ ++++..+.++-+++.
T Consensus 346 Py~~~~~n~~~~~~~~~~~i~~~l~i~f~~~~~~~~~~~~~vg~vi~~i~~~v~~~~~i~~~~~~~~~~~~~~~~ 420 (438)
T PF06011_consen 346 PYMDKRTNVLNIILSVVRLITLFLLIAFLPSLNLSEIVRTVVGYVIIIINAIVLLILFILIIVSTIISLFRKRPD 420 (438)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHhcccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 11111111 1133444466653 445566677888887777777666444 455555555555543
No 116
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=27.52 E-value=2e+02 Score=30.26 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=40.8
Q ss_pred CCCeEEEeCCCCCCCCChHHHHHHhhccc----cCCccccCCCcceEEEEcCCcEEEEEEecCCCCCCCHHHHHHHHHHH
Q 003314 483 DGPQCYIIPGNHDWFDGLNTFMRFICHKS----WLGGWFMPQKKSYFALQLPKGWWVFGLDLALHCDIDVYQFKFFAELV 558 (831)
Q Consensus 483 ~gP~vfAIPGNHDWyDGL~aFlr~F~~r~----~lgGW~mpQ~~SYFAlrLp~~wWLiGLDtql~gdID~~Q~~wFe~ll 558 (831)
.++++.-||||.==|. +.|-+.... +... .+..-.||+++++.. +-+++ +..=..|.+++.+.+
T Consensus 3 ~g~pVlFIhG~~Gs~~----q~rsl~~~~~~~~~~~~--~~~~~d~ft~df~~~--~s~~~----g~~l~~q~~~~~~~i 70 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYK----QVRSLASELQRKALLND--NSSHFDFFTVDFNEE--LSAFH----GRTLQRQAEFLAEAI 70 (225)
T ss_pred CCCEEEEECcCCCCHh----HHHHHHHHHhhhhhhcc--CccceeEEEeccCcc--ccccc----cccHHHHHHHHHHHH
Confidence 4566999999853222 333332211 0000 111224667666653 22222 222236777777755
Q ss_pred Hh-------hcCCCCeEEEEecC
Q 003314 559 KE-------QVGERDSVIIMTHE 574 (831)
Q Consensus 559 ~~-------~v~~~d~VIL~tHe 574 (831)
+. ...+.++||+++|.
T Consensus 71 ~~i~~~~~~~~~~~~~vilVgHS 93 (225)
T PF07819_consen 71 KYILELYKSNRPPPRSVILVGHS 93 (225)
T ss_pred HHHHHhhhhccCCCCceEEEEEc
Confidence 41 12466799999995
No 117
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=26.54 E-value=2.9e+02 Score=33.74 Aligned_cols=21 Identities=48% Similarity=0.657 Sum_probs=16.5
Q ss_pred CccEEEEcccccCCC-CChhhh
Q 003314 422 RGDVLLIGGDLAYPN-PSAFTY 442 (831)
Q Consensus 422 rgdfLVlgGDlvYP~-gs~e~Y 442 (831)
+.|+|++|||+..-+ ||.+..
T Consensus 52 ~VDmiLlGGDLFHeNkPSr~~L 73 (646)
T KOG2310|consen 52 DVDMILLGGDLFHENKPSRKTL 73 (646)
T ss_pred CCcEEEecCcccccCCccHHHH
Confidence 579999999998876 665544
No 118
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.05 E-value=1.3e+02 Score=30.32 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=29.3
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003314 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (831)
Q Consensus 535 LiGLDtql~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~ 576 (831)
++.+|- +...+|....+.+.+.+++..+.+..+|+++|++.
T Consensus 129 vlllDE-P~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 129 ILFLDE-PTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred EEEEeC-CCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 777774 55567888888888877643234568888999874
No 119
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=25.96 E-value=1.1e+02 Score=31.00 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=22.8
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003314 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (831)
Q Consensus 535 LiGLDtql~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~ 576 (831)
++.||- +...+|...++.+.+.+++..+.+..+|++||++.
T Consensus 158 lllLDE-Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 198 (214)
T TIGR02673 158 LLLADE-PTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198 (214)
T ss_pred EEEEeC-CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 555553 44456666666666666532233446666666654
No 120
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=25.46 E-value=1.3e+02 Score=30.17 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=24.4
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003314 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (831)
Q Consensus 535 LiGLDtql~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~ 576 (831)
++.||- +...+|..-.+.+.+.+.+..+.+..+|+++|+|.
T Consensus 148 llllDE-Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 148 LWILDE-PTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred EEEEeC-CCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 666664 44456666666666666532233456777777773
No 121
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=24.87 E-value=44 Score=25.71 Aligned_cols=10 Identities=60% Similarity=1.438 Sum_probs=8.0
Q ss_pred HHHHHHHHHH
Q 003314 99 RWYIAWILVA 108 (831)
Q Consensus 99 ~~~~~w~~~a 108 (831)
+||.+||+..
T Consensus 1 MWYfaWilG~ 10 (30)
T TIGR02106 1 MWYFAWILGT 10 (30)
T ss_pred ChhHHHHHHH
Confidence 5999999754
No 122
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=23.91 E-value=48 Score=25.15 Aligned_cols=10 Identities=60% Similarity=1.421 Sum_probs=7.9
Q ss_pred HHHHHHHHHH
Q 003314 99 RWYIAWILVA 108 (831)
Q Consensus 99 ~~~~~w~~~a 108 (831)
+||.+||+..
T Consensus 1 MWYfaWilG~ 10 (28)
T PF08173_consen 1 MWYFAWILGV 10 (28)
T ss_pred ChhHHHHHHH
Confidence 5899998754
No 123
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=23.71 E-value=51 Score=28.03 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=7.2
Q ss_pred cceEEEecCCCCCCCcc
Q 003314 628 VQHLLVNGCGGAFLHPT 644 (831)
Q Consensus 628 ~~~lIVsGGGGAfLhPT 644 (831)
.|.+||+|+||+.+.+.
T Consensus 2 apVhiv~G~aG~~l~~~ 18 (62)
T PF14008_consen 2 APVHIVVGAAGNGLDPF 18 (62)
T ss_dssp S-EEEEE--S-T----B
T ss_pred CCEEEEECcCCCCcccc
Confidence 35789999999966653
No 124
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=23.64 E-value=28 Score=32.13 Aligned_cols=32 Identities=25% Similarity=0.547 Sum_probs=24.3
Q ss_pred cceeeeccccCCCCCCCCCccchHHHHHHHHH
Q 003314 250 SKWVIYGELGNDNGGSSDEISPIYSLWATFIG 281 (831)
Q Consensus 250 ~~~~~yg~~~~~~~~~~~~~s~~~~~~~~~~~ 281 (831)
++|++|+|++.++...--.+++|=..|...++
T Consensus 80 p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~ 111 (114)
T PF07717_consen 80 PKWVVYHELVRTSKPYMRDVTAISPEWLLLFA 111 (114)
T ss_dssp -SEEEEEEEEESSSEEEEEEEE--HHHHHHH-
T ss_pred cccchhhhheecCCcEEEECcCCCHHHHHHHc
Confidence 46999999999888777788999999987654
No 125
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=23.37 E-value=1.4e+02 Score=30.51 Aligned_cols=44 Identities=11% Similarity=0.201 Sum_probs=28.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCc
Q 003314 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLL 579 (831)
Q Consensus 535 LiGLDtql~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w~~ 579 (831)
++.||- +...+|....+++.+.+++..+.+..+|+++|++....
T Consensus 158 llllDE-Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 158 LWLLDE-PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAP 201 (214)
T ss_pred EEEEeC-CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhh
Confidence 666774 44556777777777776533344557777788776443
No 126
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=23.36 E-value=79 Score=31.37 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=23.3
Q ss_pred CCeEEEEecCCCCCcccccCccchhhHHHHHHhhhCCceeEEEcCccCCCcee
Q 003314 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 617 (831)
Q Consensus 565 ~d~VIL~tHeP~w~~~~~~~~~t~~~l~~Lie~~L~~RV~LvLAGHiHhYqR~ 617 (831)
+...|+++|.|..... . ..+.+++++||+|..+.-
T Consensus 106 ~~~~i~l~H~~~~~~~----------~--------~~~~d~vi~GHtH~~~~~ 140 (168)
T cd07390 106 GGRRVYLSHYPILEWN----------G--------LDRGSWNLHGHIHSNSPD 140 (168)
T ss_pred CCEEEEEEeCCcccCC----------C--------CCCCeEEEEeeeCCCCCC
Confidence 4577999997643211 0 236789999999975444
No 127
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=22.94 E-value=68 Score=38.58 Aligned_cols=58 Identities=26% Similarity=0.417 Sum_probs=41.1
Q ss_pred HhhhheeeEecCcHHHHHHhh----cccchhhHH---HHHHHHHHHhhcCcc----ccCc-cCCCccchh
Q 003314 41 VVVGCLFFISSDNMHTLIEKL----DNNIKWWSM---YACLLGFFYFFSSPF----IGKT-ITPSYSNFS 98 (831)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~-~~~~~~~f~ 98 (831)
.++..+.....|.++++++.. -+|+-||-+ ++.+....|+.-||+ +|+. .+|.||+||
T Consensus 23 l~~~~~~i~~p~~~~~~~~~~~~~i~~~~GW~yil~~~~~l~f~l~ia~SryG~irLG~~~~~PEfs~~S 92 (537)
T COG1292 23 LALVLLGIRFPDQAETVINAIFSWITNNFGWYYILTVLLFLGFVLYLAFSRYGNIRLGKDDEKPEFSTLS 92 (537)
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheEEeccceeEeCCCCCCCCcchhH
Confidence 334455667889998888765 468889744 555556667777887 5654 499999987
No 128
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=22.86 E-value=1.5e+02 Score=29.65 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=24.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003314 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (831)
Q Consensus 535 LiGLDtql~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~ 576 (831)
++.||- +...+|....+.+.+.+++..+.+..||+++|.+.
T Consensus 148 llllDE-Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 148 VLLLDE-PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred EEEEcC-CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 666664 44456666666666666532233456777777663
No 129
>KOG4489 consensus Uncharacterized conserved protein BC10 (implicated in bladder cancer in humans) [Function unknown]
Probab=22.71 E-value=40 Score=30.98 Aligned_cols=37 Identities=35% Similarity=0.724 Sum_probs=26.9
Q ss_pred hhccccccccCCCCccccceeeeccccCCCCCCCCCccchHH-HHHHHHHHHhhheeeee
Q 003314 233 CSSWFAPVGSASDYPLLSKWVIYGELGNDNGGSSDEISPIYS-LWATFIGLYIANYVVER 291 (831)
Q Consensus 233 c~~~~~~v~~~~~~~~~~~~~~yg~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~r 291 (831)
|-+|+-|| =|.+|| |.|.+. -=++||++|+..|++||
T Consensus 3 CLQwLlPV------LLIPKp----------------~nPal~~~h~mFm~fYlvgFfLER 40 (87)
T KOG4489|consen 3 CLQWLLPV------LLIPKP----------------INPALLVEHAMFMWFYLVGFFLER 40 (87)
T ss_pred hHHhhhhh------eecCCC----------------CChHHHHHHHHHHHHHHHHHHhcc
Confidence 88899998 355555 334322 23789999999999999
No 130
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.67 E-value=1.4e+02 Score=30.22 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=22.7
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003314 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (831)
Q Consensus 535 LiGLDtql~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~ 576 (831)
++.+|- +...+|....+.+.+.+++..+++..||+++|++.
T Consensus 149 ~lllDE-P~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 189 (210)
T cd03269 149 LLILDE-PFSGLDPVNVELLKDVIRELARAGKTVILSTHQME 189 (210)
T ss_pred EEEEeC-CCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 556663 33456666666666666532223446666666653
No 131
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=21.53 E-value=1.5e+02 Score=29.87 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=24.4
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCC
Q 003314 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNW 577 (831)
Q Consensus 535 LiGLDtql~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~w 577 (831)
++.||- +...+|....+++.+.+++-.+.+..+|+++|++..
T Consensus 156 llllDE-P~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~ 197 (213)
T cd03262 156 VMLFDE-PTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF 197 (213)
T ss_pred EEEEeC-CccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 566663 444566666667777665322234467777777643
No 132
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=21.44 E-value=1.4e+02 Score=30.76 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=17.1
Q ss_pred CCCeEEEEEeecCCCCCCchHHHHHhcc
Q 003314 379 KEDLWFDFMADTGDGGNSSYSVARLLAQ 406 (831)
Q Consensus 379 ~~~~wFd~VgDtGDG~dStYtVArLmAq 406 (831)
+.+-....+|..|.|+. |..++++.
T Consensus 24 ~~Ge~~~i~G~nGsGKS---TLl~~l~G 48 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKS---TLSKTIAG 48 (243)
T ss_pred cCCCEEEEECCCCCCHH---HHHHHHhC
Confidence 45557778888888864 56666664
No 133
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=21.21 E-value=1.6e+02 Score=29.95 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=23.4
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003314 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (831)
Q Consensus 535 LiGLDtql~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~ 576 (831)
++.||- +...+|....+.+.+.+++..+.+..||+++|.+.
T Consensus 159 llllDE-Pt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~ 199 (216)
T TIGR00960 159 LLLADE-PTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN 199 (216)
T ss_pred EEEEeC-CCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 566663 44456666666666666532223446677777664
No 134
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=20.78 E-value=1.6e+02 Score=29.77 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=16.6
Q ss_pred CCCeEEEEEeecCCCCCCchHHHHHhcc
Q 003314 379 KEDLWFDFMADTGDGGNSSYSVARLLAQ 406 (831)
Q Consensus 379 ~~~~wFd~VgDtGDG~dStYtVArLmAq 406 (831)
+.+-....+|..|.|+. |..++++.
T Consensus 24 ~~Ge~~~i~G~nGsGKS---TLl~~l~G 48 (205)
T cd03226 24 YAGEIIALTGKNGAGKT---TLAKILAG 48 (205)
T ss_pred cCCCEEEEECCCCCCHH---HHHHHHhc
Confidence 34556778888887764 56666664
No 135
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=20.50 E-value=1.5e+02 Score=29.94 Aligned_cols=41 Identities=27% Similarity=0.350 Sum_probs=25.7
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003314 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (831)
Q Consensus 535 LiGLDtql~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~ 576 (831)
++.||- +...+|....+.+.+.+++..+.+..||+++|++.
T Consensus 155 llllDE-Pt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 155 ILLLDE-PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred EEEEcC-CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 667774 44556777777777766532233456777777764
No 136
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=20.36 E-value=1.8e+02 Score=29.23 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=26.8
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 003314 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (831)
Q Consensus 535 LiGLDtql~gdID~~Q~~wFe~ll~~~v~~~d~VIL~tHeP~ 576 (831)
++.||- +...+|..-.+.+.+.+++..+++..+|+++|.+.
T Consensus 155 llllDE-Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 155 LILADE-PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred EEEEeC-CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 677774 44556777777777777543334557777888774
Done!