Query 003315
Match_columns 831
No_of_seqs 766 out of 4038
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 21:10:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.2E-80 7E-85 717.6 73.0 659 114-828 48-708 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 6E-75 1.3E-79 673.6 77.4 666 87-811 56-726 (857)
3 PLN03218 maturation of RBCL 1; 100.0 3.3E-66 7.1E-71 585.0 70.1 547 202-812 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 8.4E-65 1.8E-69 573.6 68.7 546 168-777 368-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.4E-59 3E-64 531.9 53.4 512 238-812 85-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.8E-58 3.9E-63 522.8 55.3 601 115-826 85-695 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.5E-41 1.4E-45 401.2 89.4 714 80-829 157-889 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.7E-40 1E-44 393.8 90.0 707 87-828 27-787 (899)
9 PRK11447 cellulose synthase su 100.0 2E-29 4.3E-34 300.0 75.7 651 90-803 36-738 (1157)
10 PRK11447 cellulose synthase su 100.0 1.3E-27 2.8E-32 284.5 74.9 622 172-827 30-727 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.3E-25 2.7E-30 254.0 73.3 648 85-812 47-745 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.7E-24 3.8E-29 244.8 72.3 617 122-814 49-713 (987)
13 KOG2002 TPR-containing nuclear 99.9 9.5E-21 2.1E-25 199.3 61.5 559 132-734 145-744 (1018)
14 KOG2002 TPR-containing nuclear 99.9 3.7E-20 7.9E-25 195.0 62.1 572 98-698 146-758 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 1.3E-21 2.8E-26 194.9 40.0 445 173-666 51-500 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 1.2E-21 2.7E-26 195.1 36.4 435 94-560 60-499 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-18 2.6E-23 195.2 51.2 254 428-685 307-571 (615)
18 KOG2076 RNA polymerase III tra 99.9 8.2E-17 1.8E-21 169.0 60.0 647 124-802 146-892 (895)
19 TIGR00990 3a0801s09 mitochondr 99.9 2.6E-18 5.6E-23 192.5 51.0 429 172-650 129-571 (615)
20 PRK11788 tetratricopeptide rep 99.9 1.6E-19 3.4E-24 192.4 36.2 300 175-481 40-349 (389)
21 PRK10049 pgaA outer membrane p 99.9 1.6E-18 3.6E-23 197.4 46.7 410 116-553 14-460 (765)
22 PRK15174 Vi polysaccharide exp 99.9 2.6E-18 5.5E-23 191.3 46.7 352 88-479 48-403 (656)
23 PRK15174 Vi polysaccharide exp 99.9 6.7E-18 1.5E-22 188.0 47.5 332 173-514 45-381 (656)
24 PRK11788 tetratricopeptide rep 99.9 3E-19 6.5E-24 190.2 35.0 303 124-451 42-354 (389)
25 PRK14574 hmsH outer membrane p 99.9 3.2E-17 6.9E-22 182.3 51.3 445 82-553 34-517 (822)
26 PRK10049 pgaA outer membrane p 99.9 1.1E-17 2.4E-22 190.6 46.5 406 166-581 11-457 (765)
27 KOG2076 RNA polymerase III tra 99.9 3.5E-15 7.6E-20 157.0 58.4 606 177-804 146-848 (895)
28 KOG0495 HAT repeat protein [RN 99.9 6.4E-14 1.4E-18 141.7 64.6 604 132-804 266-879 (913)
29 PRK14574 hmsH outer membrane p 99.8 3.4E-16 7.4E-21 174.2 52.3 439 116-580 33-513 (822)
30 KOG0495 HAT repeat protein [RN 99.8 1.3E-13 2.9E-18 139.4 63.7 609 96-775 265-883 (913)
31 KOG2003 TPR repeat-containing 99.8 1E-15 2.2E-20 147.6 35.2 476 244-791 205-709 (840)
32 KOG2003 TPR repeat-containing 99.8 4.3E-15 9.3E-20 143.3 35.2 493 167-706 198-709 (840)
33 KOG4422 Uncharacterized conser 99.7 4.5E-13 9.7E-18 128.9 42.7 421 88-515 122-591 (625)
34 KOG4422 Uncharacterized conser 99.7 1.9E-13 4.1E-18 131.4 39.7 340 172-532 118-480 (625)
35 KOG1915 Cell cycle control pro 99.7 1.1E-12 2.3E-17 127.9 44.4 431 90-551 81-538 (677)
36 KOG1915 Cell cycle control pro 99.7 2.7E-12 5.7E-17 125.3 46.2 476 169-683 72-583 (677)
37 KOG2047 mRNA splicing factor [ 99.7 3.1E-10 6.8E-15 115.4 55.1 314 463-798 360-716 (835)
38 KOG0547 Translocase of outer m 99.7 5.1E-13 1.1E-17 130.9 32.2 220 460-684 336-565 (606)
39 KOG1173 Anaphase-promoting com 99.6 1.1E-11 2.4E-16 124.2 40.2 505 169-703 15-534 (611)
40 TIGR00540 hemY_coli hemY prote 99.6 1.7E-12 3.7E-17 137.3 33.7 289 322-649 96-398 (409)
41 KOG1173 Anaphase-promoting com 99.6 6.7E-11 1.5E-15 118.7 42.3 509 239-822 15-533 (611)
42 KOG4318 Bicoid mRNA stability 99.6 2.2E-11 4.9E-16 128.0 39.6 269 196-500 16-286 (1088)
43 KOG1126 DNA-binding cell divis 99.6 4.5E-13 9.7E-18 137.1 25.7 266 416-690 354-625 (638)
44 KOG1155 Anaphase-promoting com 99.6 2.9E-11 6.3E-16 118.1 36.7 255 423-684 235-494 (559)
45 TIGR00540 hemY_coli hemY prote 99.6 9.7E-12 2.1E-16 131.6 37.1 296 126-476 93-396 (409)
46 KOG1155 Anaphase-promoting com 99.6 1.7E-10 3.6E-15 112.9 41.8 362 306-683 160-534 (559)
47 KOG4318 Bicoid mRNA stability 99.6 1E-10 2.2E-15 123.3 43.0 655 105-825 13-753 (1088)
48 KOG0547 Translocase of outer m 99.6 9.6E-12 2.1E-16 122.1 33.0 223 422-649 333-565 (606)
49 PRK10747 putative protoheme IX 99.6 1.1E-11 2.4E-16 130.3 36.2 127 309-442 262-388 (398)
50 KOG1156 N-terminal acetyltrans 99.6 5E-09 1.1E-13 107.3 52.6 425 95-550 20-469 (700)
51 COG2956 Predicted N-acetylgluc 99.6 1.4E-11 3.1E-16 114.7 31.2 272 81-372 34-309 (389)
52 PF13429 TPR_15: Tetratricopep 99.6 1.3E-14 2.7E-19 145.9 12.3 260 175-476 13-274 (280)
53 PF13429 TPR_15: Tetratricopep 99.6 1.5E-14 3.3E-19 145.3 12.8 260 89-373 15-276 (280)
54 PRK10747 putative protoheme IX 99.6 7.2E-12 1.6E-16 131.7 33.1 221 422-682 160-387 (398)
55 COG2956 Predicted N-acetylgluc 99.6 2.1E-11 4.6E-16 113.6 30.3 223 181-409 46-278 (389)
56 KOG1126 DNA-binding cell divis 99.5 2E-12 4.4E-17 132.4 25.5 287 186-483 335-624 (638)
57 KOG4162 Predicted calmodulin-b 99.5 2.6E-09 5.7E-14 111.6 45.1 515 89-650 234-783 (799)
58 KOG3785 Uncharacterized conser 99.5 3.8E-10 8.3E-15 106.3 34.1 157 635-812 337-495 (557)
59 KOG2047 mRNA splicing factor [ 99.5 1.3E-07 2.9E-12 96.7 54.5 500 278-804 105-686 (835)
60 KOG3785 Uncharacterized conser 99.5 6.9E-09 1.5E-13 98.1 41.2 411 212-682 29-454 (557)
61 KOG4162 Predicted calmodulin-b 99.5 1.1E-08 2.4E-13 107.0 46.3 129 554-685 653-783 (799)
62 COG3071 HemY Uncharacterized e 99.5 2.9E-09 6.2E-14 103.0 37.4 287 128-477 95-388 (400)
63 COG3071 HemY Uncharacterized e 99.5 6.4E-10 1.4E-14 107.4 32.9 289 253-577 97-387 (400)
64 KOG1156 N-terminal acetyltrans 99.4 1E-08 2.2E-13 105.1 42.7 600 175-804 13-687 (700)
65 KOG0985 Vesicle coat protein c 99.4 3.8E-07 8.1E-12 98.0 54.9 81 740-828 1103-1183(1666)
66 KOG1174 Anaphase-promoting com 99.4 7.6E-09 1.7E-13 99.9 38.2 274 516-813 228-506 (564)
67 PRK12370 invasion protein regu 99.4 7.9E-11 1.7E-15 129.6 28.1 217 132-374 276-502 (553)
68 KOG3617 WD40 and TPR repeat-co 99.4 5.9E-08 1.3E-12 101.7 46.5 528 169-770 756-1359(1416)
69 PRK12370 invasion protein regu 99.4 6.9E-11 1.5E-15 130.1 27.4 251 96-374 275-535 (553)
70 KOG0985 Vesicle coat protein c 99.4 6.4E-07 1.4E-11 96.2 54.4 125 208-335 609-749 (1666)
71 KOG2376 Signal recognition par 99.4 9.9E-09 2.1E-13 104.0 38.2 169 533-704 320-505 (652)
72 KOG1127 TPR repeat-containing 99.4 2.9E-07 6.3E-12 99.0 51.0 245 432-684 800-1066(1238)
73 KOG1127 TPR repeat-containing 99.4 1.4E-07 3.1E-12 101.3 48.6 562 169-770 491-1104(1238)
74 TIGR02521 type_IV_pilW type IV 99.4 3.6E-10 7.8E-15 111.0 26.8 201 169-373 30-231 (234)
75 KOG2376 Signal recognition par 99.4 2.7E-08 6E-13 100.9 38.7 153 636-802 356-517 (652)
76 PF12569 NARP1: NMDA receptor- 99.3 8.4E-08 1.8E-12 101.7 42.7 297 172-478 6-333 (517)
77 TIGR02521 type_IV_pilW type IV 99.3 8.7E-10 1.9E-14 108.3 26.4 164 172-338 67-231 (234)
78 KOG1129 TPR repeat-containing 99.3 1.4E-10 3.1E-15 108.0 18.3 230 454-690 227-461 (478)
79 PF12569 NARP1: NMDA receptor- 99.3 1.3E-07 2.8E-12 100.4 42.4 302 248-580 12-334 (517)
80 KOG1129 TPR repeat-containing 99.3 5.7E-10 1.2E-14 104.1 21.7 230 174-444 227-458 (478)
81 PRK11189 lipoprotein NlpI; Pro 99.3 1.5E-09 3.2E-14 109.1 26.6 219 96-341 40-267 (296)
82 KOG3616 Selective LIM binding 99.3 3.5E-06 7.6E-11 87.6 51.4 111 175-298 737-847 (1636)
83 KOG3616 Selective LIM binding 99.3 2.6E-06 5.7E-11 88.5 48.3 216 423-679 714-931 (1636)
84 KOG1174 Anaphase-promoting com 99.2 6.5E-07 1.4E-11 86.9 38.5 268 413-690 230-503 (564)
85 KOG3617 WD40 and TPR repeat-co 99.2 2E-06 4.3E-11 90.7 43.8 508 239-806 725-1360(1416)
86 PRK11189 lipoprotein NlpI; Pro 99.2 1.8E-08 3.9E-13 101.3 28.6 199 169-376 63-267 (296)
87 COG3063 PilF Tfp pilus assembl 99.2 1.3E-08 2.8E-13 91.0 23.9 201 170-374 35-236 (250)
88 PF13041 PPR_2: PPR repeat fam 99.2 5.7E-11 1.2E-15 82.5 6.7 50 654-703 1-50 (50)
89 PF13041 PPR_2: PPR repeat fam 99.2 7.4E-11 1.6E-15 81.9 6.6 49 739-787 1-49 (50)
90 KOG1840 Kinesin light chain [C 99.2 9.3E-09 2E-13 107.3 24.3 176 82-268 199-395 (508)
91 KOG1840 Kinesin light chain [C 99.2 1.7E-08 3.6E-13 105.5 26.0 208 164-371 193-435 (508)
92 COG3063 PilF Tfp pilus assembl 99.1 5.3E-08 1.2E-12 87.2 24.5 194 124-339 42-236 (250)
93 KOG0548 Molecular co-chaperone 99.1 4.1E-07 8.9E-12 91.8 33.0 423 177-650 9-455 (539)
94 KOG0624 dsRNA-activated protei 99.1 6.7E-07 1.5E-11 84.6 32.1 210 87-339 43-252 (504)
95 cd05804 StaR_like StaR_like; a 99.1 3.5E-07 7.5E-12 96.1 34.6 201 169-374 5-215 (355)
96 KOG0624 dsRNA-activated protei 99.1 8E-07 1.7E-11 84.1 32.3 333 169-552 37-373 (504)
97 KOG4340 Uncharacterized conser 99.1 6.5E-08 1.4E-12 89.5 24.5 351 173-546 13-372 (459)
98 KOG0548 Molecular co-chaperone 99.1 2.2E-07 4.8E-12 93.7 29.1 408 125-581 10-456 (539)
99 KOG4340 Uncharacterized conser 99.1 4.9E-07 1.1E-11 83.8 27.6 325 123-477 16-373 (459)
100 cd05804 StaR_like StaR_like; a 99.0 1.6E-06 3.5E-11 91.1 35.8 203 117-339 6-215 (355)
101 KOG2053 Mitochondrial inherita 99.0 0.0001 2.3E-09 79.5 47.7 225 127-376 19-257 (932)
102 KOG1125 TPR repeat-containing 98.9 2.3E-07 5.1E-12 94.3 22.4 223 88-337 291-525 (579)
103 PLN02789 farnesyltranstransfer 98.9 3.1E-06 6.8E-11 84.8 27.7 221 96-358 34-268 (320)
104 PRK04841 transcriptional regul 98.8 1.7E-05 3.7E-10 94.8 38.4 56 526-581 697-761 (903)
105 PRK04841 transcriptional regul 98.8 2.5E-05 5.3E-10 93.5 38.0 375 174-550 345-761 (903)
106 KOG2053 Mitochondrial inherita 98.8 0.00062 1.3E-08 73.8 50.9 516 95-648 22-606 (932)
107 PLN02789 farnesyltranstransfer 98.8 8.4E-06 1.8E-10 81.8 27.0 216 171-392 38-267 (320)
108 KOG1125 TPR repeat-containing 98.7 1.9E-06 4.2E-11 87.9 21.9 257 175-438 290-565 (579)
109 PF04733 Coatomer_E: Coatomer 98.7 2.6E-07 5.7E-12 91.2 15.4 163 626-812 107-270 (290)
110 COG5010 TadD Flp pilus assembl 98.7 2.8E-06 6E-11 78.3 19.5 165 204-373 66-230 (257)
111 PF04733 Coatomer_E: Coatomer 98.7 6.1E-07 1.3E-11 88.7 16.2 81 602-684 183-264 (290)
112 KOG1914 mRNA cleavage and poly 98.7 0.00065 1.4E-08 69.3 37.8 426 165-614 15-500 (656)
113 TIGR03302 OM_YfiO outer membra 98.7 2.5E-06 5.3E-11 83.4 20.5 187 167-374 30-232 (235)
114 PRK15179 Vi polysaccharide bio 98.6 3.3E-06 7.2E-11 93.4 21.9 167 94-282 61-229 (694)
115 COG5010 TadD Flp pilus assembl 98.6 5.9E-06 1.3E-10 76.2 19.6 160 174-337 70-229 (257)
116 TIGR03302 OM_YfiO outer membra 98.6 7.5E-06 1.6E-10 80.0 20.7 65 83-148 34-101 (235)
117 PF12854 PPR_1: PPR repeat 98.6 8.6E-08 1.9E-12 59.3 3.9 32 736-767 2-33 (34)
118 KOG1914 mRNA cleavage and poly 98.5 0.0017 3.7E-08 66.4 41.3 421 237-685 17-501 (656)
119 PRK10370 formate-dependent nit 98.5 1.2E-05 2.5E-10 75.1 19.2 128 564-695 52-182 (198)
120 PRK10370 formate-dependent nit 98.5 3.9E-06 8.5E-11 78.2 15.9 125 130-276 52-179 (198)
121 PRK15359 type III secretion sy 98.5 5.1E-06 1.1E-10 73.1 15.8 96 172-269 26-121 (144)
122 PRK15359 type III secretion sy 98.5 3E-06 6.4E-11 74.6 14.1 108 541-650 14-121 (144)
123 KOG1128 Uncharacterized conser 98.5 5E-06 1.1E-10 87.2 17.7 217 412-648 395-614 (777)
124 PF12854 PPR_1: PPR repeat 98.5 1.6E-07 3.4E-12 58.1 4.1 34 650-683 1-34 (34)
125 PRK15179 Vi polysaccharide bio 98.5 4.7E-05 1E-09 84.5 25.5 163 167-339 83-245 (694)
126 PRK14720 transcript cleavage f 98.5 0.00014 3.1E-09 81.4 28.8 171 167-374 28-198 (906)
127 KOG1070 rRNA processing protei 98.5 7.5E-05 1.6E-09 84.1 26.1 205 169-378 1457-1667(1710)
128 KOG1070 rRNA processing protei 98.5 0.00013 2.9E-09 82.2 27.5 215 193-412 1447-1666(1710)
129 PRK14720 transcript cleavage f 98.4 7.5E-05 1.6E-09 83.6 25.7 239 203-496 29-268 (906)
130 COG4783 Putative Zn-dependent 98.4 0.0006 1.3E-08 69.0 28.8 113 215-331 316-429 (484)
131 KOG1128 Uncharacterized conser 98.4 4.4E-05 9.6E-10 80.4 21.8 214 174-443 402-615 (777)
132 COG4783 Putative Zn-dependent 98.4 0.00013 2.9E-09 73.5 22.7 149 169-339 305-454 (484)
133 KOG3081 Vesicle coat complex C 98.3 0.00047 1E-08 63.9 22.9 127 422-553 144-275 (299)
134 TIGR02552 LcrH_SycD type III s 98.3 2.3E-05 5E-10 68.8 14.5 104 170-277 17-120 (135)
135 KOG3060 Uncharacterized conser 98.3 0.0024 5.2E-08 58.9 26.4 166 207-376 54-222 (289)
136 KOG3081 Vesicle coat complex C 98.3 0.00021 4.6E-09 66.1 19.7 245 427-684 20-270 (299)
137 KOG3060 Uncharacterized conser 98.2 0.0023 5.1E-08 58.9 24.3 165 172-340 54-221 (289)
138 TIGR02552 LcrH_SycD type III s 98.1 9E-05 1.9E-09 65.0 14.7 94 208-303 20-113 (135)
139 PF09976 TPR_21: Tetratricopep 98.1 0.00016 3.4E-09 64.1 15.1 119 130-266 24-144 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00019 4.1E-09 73.5 16.1 123 244-372 173-295 (395)
141 PF09976 TPR_21: Tetratricopep 98.0 0.0003 6.5E-09 62.3 14.9 124 173-300 15-143 (145)
142 KOG0550 Molecular chaperone (D 97.9 0.00078 1.7E-08 66.4 17.4 312 488-829 52-375 (486)
143 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00034 7.4E-09 71.7 15.7 124 209-338 173-296 (395)
144 KOG0550 Molecular chaperone (D 97.9 0.0089 1.9E-07 59.2 24.0 280 173-479 52-350 (486)
145 TIGR00756 PPR pentatricopeptid 97.9 2.2E-05 4.7E-10 49.6 4.3 33 743-775 2-34 (35)
146 KOG0553 TPR repeat-containing 97.9 0.00018 3.8E-09 68.1 11.7 99 719-822 94-193 (304)
147 TIGR00756 PPR pentatricopeptid 97.9 2.5E-05 5.4E-10 49.3 4.4 33 658-690 2-34 (35)
148 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00065 1.4E-08 57.9 13.8 97 173-269 5-105 (119)
149 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00075 1.6E-08 57.5 13.4 108 206-315 3-115 (119)
150 PF13812 PPR_3: Pentatricopept 97.7 5.4E-05 1.2E-09 47.3 4.4 32 743-774 3-34 (34)
151 COG4235 Cytochrome c biogenesi 97.7 0.0015 3.3E-08 62.4 15.9 113 166-282 152-267 (287)
152 PF13812 PPR_3: Pentatricopept 97.7 5.5E-05 1.2E-09 47.3 4.3 33 657-689 2-34 (34)
153 PRK10866 outer membrane biogen 97.7 0.011 2.3E-07 57.3 21.7 183 169-371 31-238 (243)
154 cd00189 TPR Tetratricopeptide 97.7 0.00057 1.2E-08 55.4 11.3 95 173-269 3-97 (100)
155 PRK15363 pathogenicity island 97.7 0.00097 2.1E-08 57.6 12.3 97 117-233 35-131 (157)
156 PLN03088 SGT1, suppressor of 97.6 0.001 2.3E-08 68.7 14.6 99 175-277 7-105 (356)
157 cd00189 TPR Tetratricopeptide 97.6 0.00098 2.1E-08 53.9 11.4 87 248-336 8-94 (100)
158 PRK10866 outer membrane biogen 97.6 0.012 2.5E-07 57.0 20.1 57 281-337 181-239 (243)
159 PRK15363 pathogenicity island 97.6 0.0014 3.1E-08 56.6 11.9 87 526-613 41-130 (157)
160 PF07079 DUF1347: Protein of u 97.6 0.12 2.6E-06 52.3 42.6 97 554-650 301-409 (549)
161 PF14938 SNAP: Soluble NSF att 97.6 0.0045 9.8E-08 61.9 17.3 166 89-268 42-224 (282)
162 PF14938 SNAP: Soluble NSF att 97.6 0.0046 1E-07 61.9 17.4 26 120-145 38-63 (282)
163 KOG2041 WD40 repeat protein [G 97.6 0.17 3.6E-06 53.9 28.8 154 323-511 747-904 (1189)
164 PF12688 TPR_5: Tetratrico pep 97.5 0.0034 7.4E-08 52.4 13.5 108 172-285 3-116 (120)
165 PRK02603 photosystem I assembl 97.5 0.0037 7.9E-08 57.3 15.2 95 169-264 34-130 (172)
166 PF12895 Apc3: Anaphase-promot 97.5 0.00021 4.6E-09 56.1 5.9 81 183-265 2-83 (84)
167 KOG0553 TPR repeat-containing 97.5 0.0011 2.4E-08 62.9 11.4 103 175-281 86-188 (304)
168 COG4700 Uncharacterized protei 97.5 0.045 9.7E-07 48.1 19.7 94 175-268 94-188 (251)
169 PF08579 RPM2: Mitochondrial r 97.5 0.002 4.4E-08 51.3 10.7 87 660-753 29-116 (120)
170 PF14559 TPR_19: Tetratricopep 97.5 0.00037 8.1E-09 52.2 6.6 65 752-819 2-66 (68)
171 PLN03088 SGT1, suppressor of 97.5 0.0026 5.6E-08 65.8 15.0 93 557-651 8-100 (356)
172 PRK02603 photosystem I assembl 97.5 0.0048 1E-07 56.5 15.2 84 207-291 37-122 (172)
173 KOG2041 WD40 repeat protein [G 97.5 0.088 1.9E-06 55.9 25.2 206 202-441 689-904 (1189)
174 PF05843 Suf: Suppressor of fo 97.5 0.0023 5E-08 63.7 13.9 128 242-373 3-135 (280)
175 COG4700 Uncharacterized protei 97.5 0.033 7.2E-07 48.9 18.6 129 238-368 87-216 (251)
176 PF01535 PPR: PPR repeat; Int 97.5 0.00014 3.1E-09 44.2 3.4 29 743-771 2-30 (31)
177 CHL00033 ycf3 photosystem I as 97.5 0.0034 7.4E-08 57.3 13.9 96 169-265 34-138 (168)
178 PF12895 Apc3: Anaphase-promot 97.4 0.00024 5.2E-09 55.9 5.2 20 246-265 31-50 (84)
179 PF01535 PPR: PPR repeat; Int 97.4 0.00016 3.6E-09 43.9 3.4 30 658-687 2-31 (31)
180 COG3898 Uncharacterized membra 97.4 0.15 3.3E-06 50.5 33.6 224 94-344 65-297 (531)
181 PF12688 TPR_5: Tetratrico pep 97.4 0.0084 1.8E-07 50.1 14.3 105 246-355 7-116 (120)
182 PF13432 TPR_16: Tetratricopep 97.4 0.00062 1.3E-08 50.3 6.9 62 747-811 3-64 (65)
183 PF10037 MRP-S27: Mitochondria 97.4 0.0018 3.9E-08 66.8 12.3 120 585-704 65-186 (429)
184 PF10037 MRP-S27: Mitochondria 97.4 0.0021 4.6E-08 66.2 12.6 120 169-288 65-186 (429)
185 PF13414 TPR_11: TPR repeat; P 97.4 0.0012 2.6E-08 49.6 8.0 65 116-199 2-67 (69)
186 KOG2796 Uncharacterized conser 97.4 0.033 7.1E-07 51.8 18.2 132 207-339 179-315 (366)
187 PF05843 Suf: Suppressor of fo 97.4 0.004 8.8E-08 61.9 13.9 139 658-816 3-145 (280)
188 COG4235 Cytochrome c biogenesi 97.3 0.013 2.8E-07 56.3 16.2 114 114-249 153-269 (287)
189 PF13525 YfiO: Outer membrane 97.3 0.026 5.5E-07 53.2 18.5 69 117-201 5-73 (203)
190 PF13414 TPR_11: TPR repeat; P 97.3 0.00088 1.9E-08 50.3 6.6 63 740-804 2-66 (69)
191 CHL00033 ycf3 photosystem I as 97.3 0.0065 1.4E-07 55.4 13.6 62 207-268 37-100 (168)
192 PF13432 TPR_16: Tetratricopep 97.3 0.0012 2.6E-08 48.8 7.0 58 176-234 3-60 (65)
193 PRK10153 DNA-binding transcrip 97.3 0.012 2.6E-07 63.7 17.1 139 200-341 332-484 (517)
194 PRK10153 DNA-binding transcrip 97.2 0.019 4.2E-07 62.1 17.8 137 112-269 332-482 (517)
195 PF04840 Vps16_C: Vps16, C-ter 97.2 0.32 7E-06 49.0 27.1 79 422-510 184-262 (319)
196 KOG1538 Uncharacterized conser 97.2 0.08 1.7E-06 55.7 20.9 83 484-575 746-828 (1081)
197 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.34 7.3E-06 49.1 41.6 128 658-804 399-530 (660)
198 KOG1130 Predicted G-alpha GTPa 97.2 0.004 8.8E-08 61.3 11.0 233 124-371 24-301 (639)
199 KOG2114 Vacuolar assembly/sort 97.1 0.28 6.2E-06 53.7 24.7 180 242-442 336-517 (933)
200 PF14559 TPR_19: Tetratricopep 97.1 0.0016 3.4E-08 48.7 6.2 52 287-339 3-54 (68)
201 PF08579 RPM2: Mitochondrial r 97.1 0.012 2.6E-07 47.1 10.9 28 328-355 87-114 (120)
202 KOG2796 Uncharacterized conser 97.0 0.12 2.6E-06 48.2 18.4 143 170-315 177-324 (366)
203 PF13525 YfiO: Outer membrane 97.0 0.11 2.4E-06 48.9 19.3 67 169-235 4-72 (203)
204 PRK10803 tol-pal system protei 96.9 0.021 4.5E-07 55.7 13.5 95 175-269 148-246 (263)
205 PRK10803 tol-pal system protei 96.8 0.039 8.5E-07 53.8 14.8 62 172-233 182-245 (263)
206 PF13371 TPR_9: Tetratricopept 96.8 0.0074 1.6E-07 45.8 7.9 66 749-817 3-68 (73)
207 PF07079 DUF1347: Protein of u 96.8 0.78 1.7E-05 46.8 41.3 59 561-626 472-530 (549)
208 KOG1538 Uncharacterized conser 96.8 0.06 1.3E-06 56.6 15.8 214 433-685 618-846 (1081)
209 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.84 1.8E-05 46.4 37.1 421 114-578 39-529 (660)
210 PF06239 ECSIT: Evolutionarily 96.7 0.038 8.2E-07 50.4 12.4 116 224-360 33-153 (228)
211 PF06239 ECSIT: Evolutionarily 96.6 0.039 8.4E-07 50.4 12.0 101 655-756 46-153 (228)
212 KOG1130 Predicted G-alpha GTPa 96.6 0.057 1.2E-06 53.6 13.6 285 176-476 23-341 (639)
213 PF13371 TPR_9: Tetratricopept 96.6 0.014 3.1E-07 44.2 7.8 56 178-234 3-58 (73)
214 PF13281 DUF4071: Domain of un 96.5 0.74 1.6E-05 46.9 21.4 28 743-770 307-334 (374)
215 PF13281 DUF4071: Domain of un 96.5 0.59 1.3E-05 47.6 20.5 106 169-276 140-260 (374)
216 COG3898 Uncharacterized membra 96.5 1.1 2.4E-05 44.7 31.9 117 529-650 272-392 (531)
217 PF03704 BTAD: Bacterial trans 96.4 0.065 1.4E-06 47.5 12.0 70 172-242 64-138 (146)
218 PF13424 TPR_12: Tetratricopep 96.4 0.0087 1.9E-07 46.1 5.6 63 742-804 6-74 (78)
219 KOG2280 Vacuolar assembly/sort 96.3 2.2 4.8E-05 46.5 26.8 123 176-300 395-532 (829)
220 PRK15331 chaperone protein Sic 96.3 0.063 1.4E-06 46.9 10.6 99 718-821 49-147 (165)
221 COG4785 NlpI Lipoprotein NlpI, 96.2 0.93 2E-05 41.3 18.3 65 169-234 98-162 (297)
222 KOG1585 Protein required for f 96.2 0.79 1.7E-05 42.6 17.6 22 314-335 194-215 (308)
223 KOG1585 Protein required for f 96.2 1.1 2.3E-05 41.8 18.7 180 169-373 30-218 (308)
224 COG1729 Uncharacterized protei 96.2 0.12 2.5E-06 49.3 12.8 92 127-234 151-244 (262)
225 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.045 9.7E-07 56.2 10.8 64 740-805 74-141 (453)
226 PRK15331 chaperone protein Sic 96.1 0.21 4.5E-06 43.8 13.2 94 120-233 40-133 (165)
227 COG4785 NlpI Lipoprotein NlpI, 96.1 1 2.2E-05 41.0 17.8 186 180-377 75-269 (297)
228 COG4105 ComL DNA uptake lipopr 96.1 1.3 2.8E-05 42.0 21.0 79 122-216 39-117 (254)
229 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.13 2.7E-06 53.1 13.5 67 167-234 72-141 (453)
230 COG3118 Thioredoxin domain-con 96.1 0.87 1.9E-05 44.0 18.0 53 179-232 143-195 (304)
231 COG3118 Thioredoxin domain-con 96.0 0.84 1.8E-05 44.0 17.5 154 212-369 141-296 (304)
232 PF03704 BTAD: Bacterial trans 96.0 0.068 1.5E-06 47.3 10.1 72 743-815 64-140 (146)
233 KOG2114 Vacuolar assembly/sort 95.9 3.6 7.9E-05 45.6 30.1 76 747-830 711-790 (933)
234 PF08631 SPO22: Meiosis protei 95.8 2.3 5E-05 42.4 26.4 62 207-269 86-150 (278)
235 PF13424 TPR_12: Tetratricopep 95.8 0.06 1.3E-06 41.4 7.8 70 117-198 5-74 (78)
236 PF04840 Vps16_C: Vps16, C-ter 95.7 2.7 5.8E-05 42.5 33.8 84 487-576 179-262 (319)
237 KOG0543 FKBP-type peptidyl-pro 95.7 0.26 5.7E-06 49.5 13.5 141 556-733 213-353 (397)
238 PF12921 ATP13: Mitochondrial 95.7 0.23 4.9E-06 42.1 11.3 82 740-821 1-98 (126)
239 PF13512 TPR_18: Tetratricopep 95.7 0.31 6.8E-06 41.7 12.0 86 169-254 9-96 (142)
240 PF13428 TPR_14: Tetratricopep 95.6 0.028 6.2E-07 37.3 4.7 40 171-211 2-41 (44)
241 KOG0543 FKBP-type peptidyl-pro 95.6 0.2 4.4E-06 50.3 12.3 124 248-373 216-354 (397)
242 PF09205 DUF1955: Domain of un 95.5 0.67 1.4E-05 38.5 12.8 66 622-688 87-152 (161)
243 KOG4555 TPR repeat-containing 95.4 0.65 1.4E-05 38.4 12.4 95 175-270 48-145 (175)
244 PF08631 SPO22: Meiosis protei 95.4 3.3 7.1E-05 41.3 24.7 62 277-339 86-150 (278)
245 COG4105 ComL DNA uptake lipopr 95.4 2.6 5.6E-05 40.1 20.9 55 250-304 44-100 (254)
246 PF04184 ST7: ST7 protein; In 95.2 2.8 6E-05 43.8 19.0 147 83-233 169-323 (539)
247 PF13512 TPR_18: Tetratricopep 95.1 0.73 1.6E-05 39.5 12.4 85 116-216 9-93 (142)
248 PRK11906 transcriptional regul 95.1 1.4 3E-05 45.8 16.6 110 185-299 319-431 (458)
249 COG1729 Uncharacterized protei 95.0 0.59 1.3E-05 44.7 12.9 58 522-580 144-207 (262)
250 KOG1941 Acetylcholine receptor 95.0 2.2 4.8E-05 42.2 16.7 161 94-267 18-189 (518)
251 PF10345 Cohesin_load: Cohesin 95.0 8.2 0.00018 43.6 43.8 203 593-804 368-605 (608)
252 KOG4555 TPR repeat-containing 94.9 0.45 9.8E-06 39.3 10.1 91 126-235 52-145 (175)
253 PF10300 DUF3808: Protein of u 94.7 1.5 3.3E-05 47.3 16.8 137 119-269 190-334 (468)
254 PF10300 DUF3808: Protein of u 94.6 1.6 3.5E-05 47.1 16.9 116 289-406 247-373 (468)
255 PRK11906 transcriptional regul 94.6 2.7 5.8E-05 43.8 17.1 162 206-370 252-432 (458)
256 PF12921 ATP13: Mitochondrial 94.5 0.73 1.6E-05 39.1 11.2 99 655-788 1-100 (126)
257 PF04184 ST7: ST7 protein; In 94.5 2.4 5.3E-05 44.2 16.4 63 622-684 260-323 (539)
258 KOG1941 Acetylcholine receptor 94.4 2.3 5.1E-05 42.0 15.3 200 172-371 45-272 (518)
259 COG4649 Uncharacterized protei 94.4 3.2 7E-05 36.5 14.5 53 181-233 69-122 (221)
260 KOG2610 Uncharacterized conser 94.2 1.3 2.7E-05 43.3 13.1 117 181-300 114-234 (491)
261 PF04053 Coatomer_WDAD: Coatom 94.2 1.2 2.5E-05 47.4 14.4 106 242-374 297-402 (443)
262 KOG1920 IkappaB kinase complex 94.2 12 0.00025 43.7 22.3 19 780-798 1188-1206(1265)
263 PF13428 TPR_14: Tetratricopep 94.0 0.16 3.4E-06 33.7 5.0 29 312-340 3-31 (44)
264 COG2976 Uncharacterized protei 94.0 3.6 7.8E-05 37.2 14.6 95 174-270 93-189 (207)
265 PRK15180 Vi polysaccharide bio 94.0 8.6 0.00019 39.7 30.8 125 285-412 299-423 (831)
266 COG2909 MalT ATP-dependent tra 93.9 14 0.0003 41.8 27.2 164 170-339 347-526 (894)
267 COG4649 Uncharacterized protei 93.9 3.7 8E-05 36.2 13.9 123 216-338 69-195 (221)
268 PF09205 DUF1955: Domain of un 93.9 3.3 7.3E-05 34.6 14.4 63 590-653 90-152 (161)
269 smart00299 CLH Clathrin heavy 93.8 4.1 8.8E-05 35.6 15.1 42 280-322 12-53 (140)
270 KOG2610 Uncharacterized conser 93.7 1.8 3.9E-05 42.3 13.1 158 124-301 110-273 (491)
271 COG0457 NrfG FOG: TPR repeat [ 93.7 6.8 0.00015 37.6 29.0 132 241-373 60-195 (291)
272 smart00299 CLH Clathrin heavy 93.7 4.4 9.5E-05 35.4 15.6 84 175-266 12-95 (140)
273 KOG1258 mRNA processing protei 93.5 12 0.00027 40.1 34.0 134 238-374 43-180 (577)
274 PF00515 TPR_1: Tetratricopept 93.5 0.19 4.1E-06 30.9 4.4 32 777-810 2-33 (34)
275 KOG1258 mRNA processing protei 93.2 14 0.00031 39.7 33.9 130 172-304 47-180 (577)
276 PF04053 Coatomer_WDAD: Coatom 93.1 1.7 3.8E-05 46.1 13.4 98 425-543 328-425 (443)
277 PF10345 Cohesin_load: Cohesin 92.8 20 0.00044 40.5 40.6 191 99-303 38-253 (608)
278 PF07719 TPR_2: Tetratricopept 92.6 0.24 5.3E-06 30.3 3.9 32 777-810 2-33 (34)
279 PF13170 DUF4003: Protein of u 92.6 12 0.00025 37.5 17.6 25 759-783 200-224 (297)
280 PF09613 HrpB1_HrpK: Bacterial 92.5 6.8 0.00015 34.5 13.8 87 180-269 20-106 (160)
281 COG0457 NrfG FOG: TPR repeat [ 92.4 11 0.00023 36.2 29.3 120 253-373 36-158 (291)
282 KOG4234 TPR repeat-containing 92.2 2.5 5.5E-05 38.1 10.8 97 124-235 102-198 (271)
283 PF13176 TPR_7: Tetratricopept 92.2 0.31 6.8E-06 30.5 4.0 25 173-197 2-26 (36)
284 PF13170 DUF4003: Protein of u 92.0 14 0.00031 36.9 17.8 49 327-375 79-133 (297)
285 PF07035 Mic1: Colon cancer-as 91.9 8.8 0.00019 34.3 15.3 134 642-804 15-148 (167)
286 PF00515 TPR_1: Tetratricopept 91.9 0.42 9.1E-06 29.3 4.4 31 171-201 2-32 (34)
287 KOG3941 Intermediate in Toll s 91.8 1.3 2.8E-05 42.1 9.1 86 204-289 66-172 (406)
288 PRK09687 putative lyase; Provi 91.6 16 0.00034 36.4 27.8 204 585-823 67-279 (280)
289 PF13431 TPR_17: Tetratricopep 91.5 0.25 5.3E-06 30.4 2.9 22 169-190 12-33 (34)
290 COG3629 DnrI DNA-binding trans 91.5 2.2 4.8E-05 41.6 10.7 77 743-820 155-236 (280)
291 KOG3941 Intermediate in Toll s 91.4 2.6 5.6E-05 40.2 10.5 31 674-704 141-171 (406)
292 KOG2066 Vacuolar assembly/sort 91.1 29 0.00063 38.7 24.9 172 175-373 361-533 (846)
293 PF13176 TPR_7: Tetratricopept 91.1 0.51 1.1E-05 29.5 4.2 27 778-804 1-27 (36)
294 COG3629 DnrI DNA-binding trans 91.0 2.3 5.1E-05 41.4 10.4 79 205-284 153-236 (280)
295 PF07719 TPR_2: Tetratricopept 90.9 0.6 1.3E-05 28.5 4.4 30 171-200 2-31 (34)
296 PF09613 HrpB1_HrpK: Bacterial 90.9 11 0.00023 33.3 13.7 51 288-339 23-73 (160)
297 KOG1920 IkappaB kinase complex 90.9 39 0.00085 39.7 31.2 39 429-474 894-932 (1265)
298 KOG1550 Extracellular protein 90.8 31 0.00067 38.4 26.7 179 186-376 228-428 (552)
299 PF10602 RPN7: 26S proteasome 90.8 2.8 6E-05 38.3 10.3 82 734-815 28-112 (177)
300 PF13431 TPR_17: Tetratricopep 90.6 0.31 6.7E-06 30.0 2.7 32 193-225 2-33 (34)
301 PF10602 RPN7: 26S proteasome 90.4 3.4 7.4E-05 37.7 10.5 62 242-303 38-101 (177)
302 PF02259 FAT: FAT domain; Int 89.9 13 0.00029 38.6 16.3 65 740-804 145-212 (352)
303 PF02284 COX5A: Cytochrome c o 89.1 6.9 0.00015 31.1 9.5 64 759-823 28-91 (108)
304 PF06552 TOM20_plant: Plant sp 88.9 3.5 7.7E-05 36.8 8.9 63 757-823 51-125 (186)
305 TIGR02561 HrpB1_HrpK type III 88.8 15 0.00032 31.8 12.7 53 181-234 21-73 (153)
306 PF07035 Mic1: Colon cancer-as 88.7 17 0.00038 32.4 15.4 28 335-362 19-46 (167)
307 PF14853 Fis1_TPR_C: Fis1 C-te 88.6 2.1 4.6E-05 29.6 5.8 42 780-823 5-46 (53)
308 PF13181 TPR_8: Tetratricopept 88.2 0.84 1.8E-05 27.9 3.5 27 778-804 3-29 (34)
309 KOG4234 TPR repeat-containing 88.1 4.6 0.0001 36.5 9.0 93 460-553 105-201 (271)
310 KOG1464 COP9 signalosome, subu 88.1 25 0.00054 33.6 18.3 191 131-337 41-259 (440)
311 COG3947 Response regulator con 88.0 27 0.00059 33.9 15.1 72 743-815 281-357 (361)
312 COG2976 Uncharacterized protei 88.0 21 0.00045 32.6 13.5 91 283-375 97-189 (207)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 87.8 4.4 9.5E-05 31.8 7.6 44 760-803 26-69 (103)
314 KOG2280 Vacuolar assembly/sort 87.8 50 0.0011 36.7 38.1 101 233-335 425-532 (829)
315 KOG2062 26S proteasome regulat 87.3 53 0.0011 36.5 36.8 124 559-684 509-634 (929)
316 KOG3364 Membrane protein invol 87.3 14 0.00029 31.3 10.6 83 738-823 29-116 (149)
317 COG2909 MalT ATP-dependent tra 87.3 60 0.0013 37.1 31.0 25 661-685 623-647 (894)
318 PF06552 TOM20_plant: Plant sp 86.9 12 0.00027 33.5 11.0 33 185-218 50-82 (186)
319 KOG4570 Uncharacterized conser 86.1 8.8 0.00019 37.5 10.3 99 655-770 63-164 (418)
320 KOG4648 Uncharacterized conser 86.0 4.2 9.1E-05 39.9 8.3 96 175-274 102-197 (536)
321 PRK15180 Vi polysaccharide bio 85.6 50 0.0011 34.5 29.3 97 172-270 325-421 (831)
322 PF04097 Nic96: Nup93/Nic96; 85.1 73 0.0016 36.0 22.9 61 280-341 116-183 (613)
323 PF11207 DUF2989: Protein of u 84.7 9 0.00019 35.1 9.3 78 97-190 121-198 (203)
324 KOG1550 Extracellular protein 84.0 77 0.0017 35.4 26.5 231 552-804 289-537 (552)
325 PF02259 FAT: FAT domain; Int 84.0 57 0.0012 33.8 21.7 61 554-614 149-212 (352)
326 PF00637 Clathrin: Region in C 83.6 0.065 1.4E-06 47.3 -4.6 53 317-369 14-66 (143)
327 KOG2062 26S proteasome regulat 83.6 80 0.0017 35.2 40.1 42 171-212 60-102 (929)
328 PF13929 mRNA_stabil: mRNA sta 83.4 48 0.001 32.5 15.5 142 670-824 142-291 (292)
329 KOG4648 Uncharacterized conser 83.3 7.2 0.00016 38.4 8.5 53 422-476 104-157 (536)
330 KOG2063 Vacuolar assembly/sort 83.2 85 0.0018 36.5 18.1 38 495-532 601-638 (877)
331 PF13374 TPR_10: Tetratricopep 83.1 3 6.5E-05 26.8 4.5 28 777-804 3-30 (42)
332 PF13174 TPR_6: Tetratricopept 83.0 2.2 4.7E-05 25.7 3.5 29 172-200 2-30 (33)
333 PF13181 TPR_8: Tetratricopept 82.8 3.3 7.1E-05 25.2 4.3 30 171-200 2-31 (34)
334 PF13374 TPR_10: Tetratricopep 82.5 3 6.6E-05 26.7 4.3 28 742-769 3-30 (42)
335 TIGR02561 HrpB1_HrpK type III 82.4 32 0.0007 29.9 12.4 51 288-339 23-73 (153)
336 KOG4507 Uncharacterized conser 82.4 7.8 0.00017 41.2 9.0 102 130-251 620-721 (886)
337 KOG0276 Vesicle coat complex C 82.4 19 0.0004 38.7 11.6 100 562-682 648-747 (794)
338 TIGR03504 FimV_Cterm FimV C-te 81.9 2.6 5.6E-05 27.7 3.6 24 781-804 4-27 (44)
339 PF04097 Nic96: Nup93/Nic96; 81.4 1E+02 0.0022 34.9 20.4 28 451-478 325-355 (613)
340 cd00923 Cyt_c_Oxidase_Va Cytoc 81.3 13 0.00027 29.3 7.5 62 721-783 22-83 (103)
341 PF11207 DUF2989: Protein of u 81.1 13 0.00029 34.0 9.0 72 257-329 123-197 (203)
342 PF07721 TPR_4: Tetratricopept 81.0 2.2 4.9E-05 24.2 2.8 23 172-194 3-25 (26)
343 KOG1586 Protein required for f 81.0 50 0.0011 31.1 20.3 22 251-272 165-186 (288)
344 KOG2396 HAT (Half-A-TPR) repea 80.9 81 0.0018 33.5 39.3 65 169-234 104-169 (568)
345 PRK09687 putative lyase; Provi 80.7 64 0.0014 32.2 30.3 157 203-372 35-201 (280)
346 COG4455 ImpE Protein of avirul 80.7 10 0.00023 34.9 8.0 56 747-804 7-63 (273)
347 PF13174 TPR_6: Tetratricopept 80.1 2.3 4.9E-05 25.6 2.8 24 781-804 5-28 (33)
348 KOG0276 Vesicle coat complex C 79.3 49 0.0011 35.8 13.4 45 321-371 648-692 (794)
349 KOG4570 Uncharacterized conser 77.9 20 0.00043 35.2 9.4 51 635-685 114-164 (418)
350 PF02284 COX5A: Cytochrome c o 77.8 34 0.00074 27.4 9.4 62 151-213 26-87 (108)
351 COG5159 RPN6 26S proteasome re 77.4 73 0.0016 30.9 13.6 85 745-829 129-222 (421)
352 PRK11619 lytic murein transgly 76.2 1.5E+02 0.0032 33.8 41.1 253 428-692 254-512 (644)
353 PF07721 TPR_4: Tetratricopept 76.0 3.8 8.3E-05 23.2 2.7 22 779-800 4-25 (26)
354 COG4455 ImpE Protein of avirul 75.9 20 0.00044 33.2 8.4 55 283-338 9-63 (273)
355 COG1747 Uncharacterized N-term 75.4 1.2E+02 0.0026 32.4 24.9 91 277-372 68-158 (711)
356 KOG2066 Vacuolar assembly/sort 75.0 1.5E+02 0.0033 33.4 27.7 27 118-144 393-419 (846)
357 KOG4507 Uncharacterized conser 75.0 40 0.00087 36.2 11.4 108 558-667 614-721 (886)
358 TIGR02508 type_III_yscG type I 74.5 29 0.00063 27.6 7.7 84 721-812 20-103 (115)
359 PF14561 TPR_20: Tetratricopep 74.4 41 0.00088 26.5 9.2 52 169-220 21-73 (90)
360 TIGR03504 FimV_Cterm FimV C-te 73.4 7.7 0.00017 25.5 3.9 23 316-338 5-27 (44)
361 PRK11619 lytic murein transgly 72.7 1.8E+02 0.0038 33.2 39.3 92 561-658 417-513 (644)
362 KOG2471 TPR repeat-containing 71.6 60 0.0013 34.2 11.4 106 719-825 253-383 (696)
363 smart00028 TPR Tetratricopepti 71.6 7 0.00015 22.6 3.5 28 172-199 3-30 (34)
364 KOG4642 Chaperone-dependent E3 71.4 64 0.0014 30.6 10.6 88 178-268 18-106 (284)
365 PF07163 Pex26: Pex26 protein; 71.0 56 0.0012 31.8 10.4 86 594-679 91-181 (309)
366 KOG1464 COP9 signalosome, subu 69.7 1.1E+02 0.0024 29.5 22.1 170 623-813 147-339 (440)
367 PF07575 Nucleopor_Nup85: Nup8 69.6 2E+02 0.0043 32.4 17.4 39 595-638 306-344 (566)
368 COG0790 FOG: TPR repeat, SEL1 69.5 1.3E+02 0.0028 30.2 22.5 162 636-815 92-276 (292)
369 smart00028 TPR Tetratricopepti 69.4 7.9 0.00017 22.3 3.4 26 779-804 4-29 (34)
370 KOG4077 Cytochrome c oxidase, 69.4 35 0.00077 28.4 7.5 45 725-769 68-112 (149)
371 PF07163 Pex26: Pex26 protein; 68.8 51 0.0011 32.0 9.7 57 417-473 120-181 (309)
372 PF08424 NRDE-2: NRDE-2, neces 68.8 1.4E+02 0.0031 30.5 18.3 78 257-336 48-128 (321)
373 KOG2471 TPR repeat-containing 68.5 1.7E+02 0.0036 31.1 15.2 50 530-579 250-311 (696)
374 PF00637 Clathrin: Region in C 68.2 3 6.5E-05 36.6 1.6 83 491-576 13-95 (143)
375 COG0790 FOG: TPR repeat, SEL1 67.2 1.4E+02 0.0031 29.9 24.3 151 182-341 53-222 (292)
376 PF10366 Vps39_1: Vacuolar sor 67.0 25 0.00054 28.9 6.6 40 535-579 28-67 (108)
377 TIGR02508 type_III_yscG type I 66.6 52 0.0011 26.2 7.6 87 185-279 20-106 (115)
378 PF08424 NRDE-2: NRDE-2, neces 65.1 1.7E+02 0.0036 29.9 17.1 61 222-284 48-108 (321)
379 PF10579 Rapsyn_N: Rapsyn N-te 65.0 17 0.00037 27.4 4.6 46 753-798 18-65 (80)
380 PF14689 SPOB_a: Sensor_kinase 64.8 15 0.00033 26.4 4.4 45 758-804 7-51 (62)
381 PRK13184 pknD serine/threonine 64.2 3.1E+02 0.0067 32.7 26.9 93 174-269 479-581 (932)
382 PF10579 Rapsyn_N: Rapsyn N-te 63.7 20 0.00043 27.1 4.8 51 716-766 16-68 (80)
383 cd08819 CARD_MDA5_2 Caspase ac 63.4 57 0.0012 25.3 7.2 65 504-570 21-85 (88)
384 PF09477 Type_III_YscG: Bacter 63.4 80 0.0017 25.6 8.5 80 720-806 20-99 (116)
385 KOG4521 Nuclear pore complex, 63.3 2E+02 0.0043 34.3 14.4 58 171-228 984-1044(1480)
386 PF14561 TPR_20: Tetratricopep 62.2 76 0.0016 25.0 8.4 33 307-339 19-51 (90)
387 KOG1586 Protein required for f 62.2 1.5E+02 0.0032 28.2 19.5 32 317-348 161-192 (288)
388 KOG0890 Protein kinase of the 61.5 4.9E+02 0.011 34.1 37.6 152 175-334 1388-1542(2382)
389 KOG2659 LisH motif-containing 60.6 1.5E+02 0.0033 28.0 11.1 84 719-804 39-131 (228)
390 KOG2396 HAT (Half-A-TPR) repea 60.1 2.4E+02 0.0053 30.1 41.0 98 583-684 456-558 (568)
391 KOG4642 Chaperone-dependent E3 59.6 1.6E+02 0.0036 28.0 11.1 102 595-700 19-126 (284)
392 KOG3364 Membrane protein invol 59.1 77 0.0017 27.1 7.9 56 719-777 48-105 (149)
393 COG4259 Uncharacterized protei 58.4 56 0.0012 25.9 6.5 61 757-819 53-113 (121)
394 KOG0890 Protein kinase of the 58.2 5.6E+02 0.012 33.7 37.9 293 171-480 1421-1732(2382)
395 KOG0687 26S proteasome regulat 58.2 2.1E+02 0.0045 28.7 14.5 95 417-513 106-209 (393)
396 COG1747 Uncharacterized N-term 57.2 2.8E+02 0.006 29.8 26.0 167 203-376 64-236 (711)
397 PF04910 Tcf25: Transcriptiona 56.8 2.5E+02 0.0054 29.2 21.1 102 167-268 37-167 (360)
398 KOG1308 Hsp70-interacting prot 56.6 17 0.00036 36.3 4.4 85 497-582 126-213 (377)
399 KOG2297 Predicted translation 56.5 2.1E+02 0.0046 28.3 18.0 19 451-469 322-340 (412)
400 COG3947 Response regulator con 56.2 2.1E+02 0.0046 28.2 14.9 61 623-684 281-341 (361)
401 KOG0376 Serine-threonine phosp 55.7 28 0.0006 36.5 6.0 106 176-285 10-115 (476)
402 PF07575 Nucleopor_Nup85: Nup8 55.3 3.5E+02 0.0075 30.4 21.8 25 170-195 149-173 (566)
403 KOG4077 Cytochrome c oxidase, 55.1 85 0.0019 26.3 7.4 62 759-821 67-128 (149)
404 PF09986 DUF2225: Uncharacteri 55.0 1.9E+02 0.0042 27.4 13.2 93 95-200 90-195 (214)
405 PF14853 Fis1_TPR_C: Fis1 C-te 53.9 31 0.00067 23.9 4.2 36 746-783 6-41 (53)
406 cd00280 TRFH Telomeric Repeat 53.1 1E+02 0.0022 28.0 8.1 49 721-769 84-139 (200)
407 PF09986 DUF2225: Uncharacteri 51.8 2.2E+02 0.0047 27.0 12.7 91 720-810 91-199 (214)
408 COG5187 RPN7 26S proteasome re 51.6 2.5E+02 0.0054 27.6 11.3 71 741-811 115-190 (412)
409 PF11846 DUF3366: Domain of un 50.0 83 0.0018 29.2 8.0 48 759-810 129-176 (193)
410 PRK10941 hypothetical protein; 49.9 2.1E+02 0.0045 28.3 10.8 59 210-269 186-244 (269)
411 KOG2063 Vacuolar assembly/sort 49.2 5.1E+02 0.011 30.5 19.5 27 172-198 506-532 (877)
412 KOG0376 Serine-threonine phosp 48.7 42 0.00092 35.3 6.0 105 124-250 11-115 (476)
413 PF08311 Mad3_BUB1_I: Mad3/BUB 48.1 1.5E+02 0.0032 25.3 8.4 43 293-335 81-124 (126)
414 PF14689 SPOB_a: Sensor_kinase 47.5 45 0.00098 24.0 4.4 13 284-296 32-44 (62)
415 PF12862 Apc5: Anaphase-promot 47.2 1E+02 0.0023 24.4 7.0 71 751-821 8-87 (94)
416 PF00244 14-3-3: 14-3-3 protei 46.5 2.8E+02 0.006 26.8 11.0 60 174-233 5-65 (236)
417 PRK13800 putative oxidoreducta 46.1 6.1E+02 0.013 30.6 26.9 265 517-824 632-897 (897)
418 PRK13342 recombination factor 46.1 4E+02 0.0087 28.5 18.7 47 659-705 230-279 (413)
419 COG4976 Predicted methyltransf 45.7 36 0.00078 31.9 4.5 59 751-813 5-64 (287)
420 KOG0545 Aryl-hydrocarbon recep 44.7 2.4E+02 0.0051 27.1 9.5 97 172-269 180-293 (329)
421 PF11848 DUF3368: Domain of un 44.6 87 0.0019 21.1 5.2 32 752-783 13-44 (48)
422 PF09670 Cas_Cas02710: CRISPR- 44.6 2.4E+02 0.0051 29.7 11.0 53 215-268 141-197 (379)
423 PRK10941 hypothetical protein; 44.3 2.5E+02 0.0054 27.7 10.4 78 744-823 184-263 (269)
424 KOG1308 Hsp70-interacting prot 43.8 41 0.00089 33.7 4.8 94 180-276 124-218 (377)
425 PF09670 Cas_Cas02710: CRISPR- 42.1 4.4E+02 0.0094 27.8 13.2 54 595-649 140-197 (379)
426 PF08311 Mad3_BUB1_I: Mad3/BUB 41.8 83 0.0018 26.8 5.9 42 724-765 81-123 (126)
427 PF11817 Foie-gras_1: Foie gra 41.4 3.5E+02 0.0075 26.4 13.0 59 745-803 182-245 (247)
428 PRK07003 DNA polymerase III su 41.1 4.6E+02 0.0099 30.4 12.8 87 722-811 180-280 (830)
429 COG0735 Fur Fe2+/Zn2+ uptake r 40.9 1.3E+02 0.0028 26.3 7.2 61 333-394 9-69 (145)
430 PRK08691 DNA polymerase III su 39.6 5.2E+02 0.011 29.6 12.9 88 723-813 181-282 (709)
431 smart00386 HAT HAT (Half-A-TPR 39.3 68 0.0015 18.6 3.9 28 755-783 1-28 (33)
432 COG0735 Fur Fe2+/Zn2+ uptake r 39.0 1.7E+02 0.0037 25.6 7.6 58 196-254 12-69 (145)
433 PF13929 mRNA_stabil: mRNA sta 38.7 4.1E+02 0.0088 26.4 18.1 116 253-368 141-261 (292)
434 PF12862 Apc5: Anaphase-promot 38.4 1.1E+02 0.0024 24.2 6.0 18 251-268 9-26 (94)
435 PF00244 14-3-3: 14-3-3 protei 38.4 3.7E+02 0.0081 25.9 11.3 48 758-805 143-198 (236)
436 PF04910 Tcf25: Transcriptiona 38.0 4.9E+02 0.011 27.1 23.0 53 353-405 111-164 (360)
437 KOG0403 Neoplastic transformat 38.0 5.1E+02 0.011 27.4 27.5 75 624-703 512-586 (645)
438 PF11663 Toxin_YhaV: Toxin wit 36.3 39 0.00086 28.6 3.0 31 668-700 107-137 (140)
439 PF11663 Toxin_YhaV: Toxin wit 36.3 46 0.001 28.2 3.4 33 215-249 105-137 (140)
440 KOG4521 Nuclear pore complex, 35.9 8.7E+02 0.019 29.5 14.3 184 172-370 922-1127(1480)
441 PF11848 DUF3368: Domain of un 35.7 1.4E+02 0.003 20.1 5.1 35 785-819 11-45 (48)
442 KOG0128 RNA-binding protein SA 35.3 7.6E+02 0.017 28.6 34.8 82 186-269 95-179 (881)
443 PF11846 DUF3366: Domain of un 35.2 1.6E+02 0.0035 27.3 7.4 33 272-304 141-173 (193)
444 KOG0991 Replication factor C, 35.2 4.1E+02 0.0089 25.4 13.1 70 718-789 204-285 (333)
445 KOG0551 Hsp90 co-chaperone CNS 34.6 3.1E+02 0.0068 27.7 9.1 90 177-267 88-180 (390)
446 cd00280 TRFH Telomeric Repeat 34.5 2.6E+02 0.0055 25.6 7.7 62 221-285 85-153 (200)
447 PRK10564 maltose regulon perip 34.5 74 0.0016 31.5 4.9 41 238-278 254-295 (303)
448 KOG4567 GTPase-activating prot 34.3 3.4E+02 0.0073 27.1 9.1 71 225-300 263-343 (370)
449 PRK10564 maltose regulon perip 34.1 1E+02 0.0022 30.6 5.8 35 739-773 254-289 (303)
450 PHA02537 M terminase endonucle 33.9 4.3E+02 0.0094 25.3 11.7 29 453-481 86-114 (230)
451 PF14669 Asp_Glu_race_2: Putat 33.8 3.8E+02 0.0083 24.7 16.2 25 657-681 182-206 (233)
452 TIGR02710 CRISPR-associated pr 32.8 6E+02 0.013 26.6 12.2 52 214-265 139-196 (380)
453 PF04190 DUF410: Protein of un 32.7 4.9E+02 0.011 25.6 19.3 25 309-333 89-113 (260)
454 cd08819 CARD_MDA5_2 Caspase ac 32.4 2.5E+02 0.0053 22.0 6.7 36 183-223 49-84 (88)
455 KOG0991 Replication factor C, 32.2 4.6E+02 0.0099 25.1 12.8 83 436-521 180-274 (333)
456 PHA02875 ankyrin repeat protei 31.7 6.5E+02 0.014 26.7 16.8 44 472-519 183-229 (413)
457 KOG0686 COP9 signalosome, subu 31.5 6.3E+02 0.014 26.5 20.9 177 86-266 48-255 (466)
458 KOG2034 Vacuolar sorting prote 30.6 9.3E+02 0.02 28.2 31.7 45 317-370 511-555 (911)
459 PF12968 DUF3856: Domain of Un 30.1 3.3E+02 0.0072 22.8 8.5 62 128-197 20-82 (144)
460 PF07720 TPR_3: Tetratricopept 30.0 1.4E+02 0.0031 18.6 4.3 21 779-799 4-24 (36)
461 PF04190 DUF410: Protein of un 29.9 5.5E+02 0.012 25.3 19.2 82 238-339 88-170 (260)
462 PF10255 Paf67: RNA polymerase 29.9 2.8E+02 0.0061 29.2 8.5 56 627-682 128-190 (404)
463 PF10366 Vps39_1: Vacuolar sor 29.5 3.2E+02 0.0069 22.4 9.3 26 453-478 42-67 (108)
464 PF10255 Paf67: RNA polymerase 29.4 4.8E+02 0.01 27.6 10.1 24 488-511 125-148 (404)
465 COG5187 RPN7 26S proteasome re 28.8 5.8E+02 0.013 25.2 12.9 65 311-375 116-185 (412)
466 PRK09857 putative transposase; 28.4 4.3E+02 0.0093 26.5 9.4 62 211-273 212-273 (292)
467 smart00777 Mad3_BUB1_I Mad3/BU 28.1 3.8E+02 0.0081 22.8 8.2 41 760-800 82-123 (125)
468 PRK12798 chemotaxis protein; R 27.5 7.5E+02 0.016 26.1 20.7 29 276-304 258-286 (421)
469 PRK14951 DNA polymerase III su 27.4 9.6E+02 0.021 27.3 13.5 87 723-812 186-286 (618)
470 PF10475 DUF2450: Protein of u 27.2 4.7E+02 0.01 26.3 9.6 110 421-541 104-218 (291)
471 COG2812 DnaX DNA polymerase II 27.2 7.9E+02 0.017 27.0 11.6 94 719-815 177-284 (515)
472 KOG2034 Vacuolar sorting prote 27.1 1.1E+03 0.023 27.7 27.7 49 247-301 365-415 (911)
473 KOG4814 Uncharacterized conser 26.8 5.3E+02 0.011 28.8 9.8 85 252-338 366-456 (872)
474 COG5159 RPN6 26S proteasome re 26.6 6.3E+02 0.014 24.9 21.6 55 314-368 7-68 (421)
475 PHA02537 M terminase endonucle 26.6 5.8E+02 0.013 24.5 11.1 21 93-113 94-114 (230)
476 COG5108 RPO41 Mitochondrial DN 26.3 3.6E+02 0.0079 30.0 8.6 75 245-322 33-115 (1117)
477 COG5108 RPO41 Mitochondrial DN 26.2 3.3E+02 0.0071 30.3 8.3 76 590-668 32-115 (1117)
478 PF02184 HAT: HAT (Half-A-TPR) 26.1 1.6E+02 0.0034 18.0 3.5 13 757-769 3-15 (32)
479 KOG2422 Uncharacterized conser 26.0 9.3E+02 0.02 26.6 16.7 100 167-266 281-404 (665)
480 smart00777 Mad3_BUB1_I Mad3/BU 25.9 4.1E+02 0.009 22.6 9.3 41 294-334 82-123 (125)
481 PF15297 CKAP2_C: Cytoskeleton 25.7 5.9E+02 0.013 26.1 9.5 64 221-286 119-186 (353)
482 PF06957 COPI_C: Coatomer (COP 25.6 4.5E+02 0.0099 27.9 9.2 27 779-805 303-329 (422)
483 KOG0292 Vesicle coat complex C 25.6 4.5E+02 0.0098 30.5 9.4 129 425-580 653-782 (1202)
484 PF15297 CKAP2_C: Cytoskeleton 25.2 6.6E+02 0.014 25.7 9.7 63 257-321 120-186 (353)
485 PF09477 Type_III_YscG: Bacter 24.8 3.9E+02 0.0085 21.9 11.5 88 183-278 19-106 (116)
486 PF13762 MNE1: Mitochondrial s 24.8 4.8E+02 0.01 22.9 10.9 77 659-751 42-125 (145)
487 PRK13342 recombination factor 24.7 8.7E+02 0.019 25.9 17.6 28 720-747 244-271 (413)
488 PRK09857 putative transposase; 24.7 7E+02 0.015 25.1 10.2 67 624-691 209-275 (292)
489 COG4976 Predicted methyltransf 24.6 1.9E+02 0.0042 27.4 5.5 55 180-235 5-59 (287)
490 PRK13341 recombination factor 24.2 1.2E+03 0.025 27.2 18.2 126 566-705 169-307 (725)
491 PRK14958 DNA polymerase III su 24.2 1E+03 0.022 26.4 13.5 108 696-817 165-286 (509)
492 PF13934 ELYS: Nuclear pore co 24.1 6.4E+02 0.014 24.1 17.2 79 181-267 89-167 (226)
493 TIGR01228 hutU urocanate hydra 24.1 3.1E+02 0.0067 29.4 7.4 54 752-806 356-423 (545)
494 PRK06645 DNA polymerase III su 24.0 8.8E+02 0.019 26.7 11.5 87 723-812 190-293 (507)
495 PF10475 DUF2450: Protein of u 24.0 6.1E+02 0.013 25.4 9.8 52 316-373 104-155 (291)
496 KOG2582 COP9 signalosome, subu 23.9 8.1E+02 0.018 25.3 15.8 19 320-338 193-211 (422)
497 PF04762 IKI3: IKI3 family; I 23.7 1.4E+03 0.029 27.8 16.2 27 554-580 815-843 (928)
498 PRK12798 chemotaxis protein; R 23.7 8.9E+02 0.019 25.6 22.8 153 217-374 124-286 (421)
499 KOG4814 Uncharacterized conser 23.5 7.7E+02 0.017 27.6 10.3 92 177-269 361-457 (872)
500 PF10516 SHNi-TPR: SHNi-TPR; 23.5 1.9E+02 0.0041 18.4 3.7 27 172-198 3-29 (38)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-80 Score=717.59 Aligned_cols=659 Identities=18% Similarity=0.237 Sum_probs=628.8
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHH
Q 003315 114 SHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDIL 193 (831)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 193 (831)
++++..++.++..+++.|++++|..++..+.+. +.+++..+|..+++.|.+.+.++.|..++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~------------------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 109 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQEL------------------RVPVDEDAYVALFRLCEWKRAVEEGSRVC 109 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc------------------CCCCChhHHHHHHHHHhhCCCHHHHHHHH
Confidence 567888999999999999999999999987665 33456678889999999999999999999
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003315 194 FQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTP 273 (831)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 273 (831)
.++.+.+..++...+|.++..|.+.|+.+.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|...|+.|
T Consensus 110 ~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P 185 (857)
T PLN03077 110 SRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185 (857)
T ss_pred HHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999974 799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003315 274 NAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALIS 353 (831)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 353 (831)
|..||+.++.+|+..++++.+.+++..+.+.|+.++..+++.|+.+|++.|++++|.++|++|.+ ||..+|+++|.
T Consensus 186 d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~ 261 (857)
T PLN03077 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMIS 261 (857)
T ss_pred ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999974 68999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHH
Q 003315 354 GYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEK 433 (831)
Q Consensus 354 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 433 (831)
+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|..||..+|+.|+.+|++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003315 434 AMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKR 513 (831)
Q Consensus 434 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 513 (831)
|.++|++|.. ||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+
T Consensus 342 A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 342 AEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999974 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 003315 514 HGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLI 593 (831)
Q Consensus 514 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (831)
.|+.++..+++.++.+|++.|++++|.++|++|.+.+..+|+.++.+|++.|+.++|+.+|++|.. +..||..++..++
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 5899999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 003315 594 TNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLR 673 (831)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 673 (831)
.+|++.|+.+.+.+++..+.+.|+.+|..+++.|+++|+++|++++|.++|+.+ .||..+||+||.+|++.|+.+
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999987 579999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHH
Q 003315 674 EARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMK-EMGIRPDVISYTVLIAKLC 752 (831)
Q Consensus 674 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~ 752 (831)
+|+++|++|.+.|+.||..||+.++.+|++ .|.+++|.++|+.|. +.|+.|+..+|+.++++|+
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~---------------~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSR---------------SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhh---------------cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999998 456999999999999 7899999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhccccc
Q 003315 753 NTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT-KSSLERGIEKARILQ 828 (831)
Q Consensus 753 ~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~-~~~l~~~~~~~~~~~ 828 (831)
+.|++++|.+++++|. ++||..+|++|+.+|...|+.+.|....+++.+ ++|+..+ |..+.+.|.+.|+.+
T Consensus 637 r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~ 708 (857)
T PLN03077 637 RAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWD 708 (857)
T ss_pred hCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChH
Confidence 9999999999999984 899999999999999999999999999999988 7777655 555567888888864
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6e-75 Score=673.58 Aligned_cols=666 Identities=17% Similarity=0.245 Sum_probs=626.8
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCC
Q 003315 87 VVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGS 166 (831)
Q Consensus 87 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (831)
.+...+...|+++.|+.+|..+.+.|..|+..+|..++..+...+..+.+..++..+++..+
T Consensus 56 ~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------ 117 (857)
T PLN03077 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP------------------ 117 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC------------------
Confidence 34455567799999999999999999999999999999999999999999999888776632
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
.++...++.++..|.+.|+++.|..+|++|. .||..+|+.++.+|.+.|++++|+++|++|...|+.||..||+.+
T Consensus 118 ~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~l 193 (857)
T PLN03077 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCV 193 (857)
T ss_pred CCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 2355688999999999999999999999986 468899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
++++++.+++..+.+++..|.+.|+.||..+++.++.+|++.|++++|..+|++|.. +|..+|+.++.+|++.|++
T Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~ 269 (857)
T PLN03077 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGEC 269 (857)
T ss_pred HHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999999999999863 5789999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEF 406 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 406 (831)
++|.++|++|.+.|+.||..+|+.++.++++.|+++.|.+++..|.+.|..||..+++.++.+|++.|++++|.++|++|
T Consensus 270 ~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcc
Q 003315 407 KDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDII 486 (831)
Q Consensus 407 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 486 (831)
. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..
T Consensus 350 ~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 350 E----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred C----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 6 368999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC---CCCChHHHHHHHHh
Q 003315 487 TYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGK---CLENYSAMINGYCK 563 (831)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 563 (831)
+|+.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|..+|++|... +..+|+.++.+|++
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh
Confidence 99999999999999999999999986 467889999999999999999999999999854 23349999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003315 564 TGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLV 643 (831)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 643 (831)
.|..+.+.+++..+.+.|..++..+++.++..|++.|+.++|..+|+.+ .||..+|+.++.+|++.|+.++|.++
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886 68999999999999999999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCH
Q 003315 644 FNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMK-QRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDV 722 (831)
Q Consensus 644 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 722 (831)
|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.+++++++ .|+.
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r---------------~G~~ 641 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR---------------AGKL 641 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh---------------CCCH
Confidence 9999999999999999999999999999999999999999 68999999999999999998 5669
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 723 VDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAIALVDE 801 (831)
Q Consensus 723 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~ 801 (831)
++|.+++++| .++||..+|++|+.+|...|+.+.+....+++.+ +.|+ ...|..|.+.|...|++++|.++.+.
T Consensus 642 ~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 642 TEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 9999999988 4799999999999999999999999999999987 4665 66778888999999999999999999
Q ss_pred HHhCCCCCCH
Q 003315 802 MSVKGIQGDD 811 (831)
Q Consensus 802 ~~~~g~~pd~ 811 (831)
|.++|+.++.
T Consensus 717 M~~~g~~k~~ 726 (857)
T PLN03077 717 MRENGLTVDP 726 (857)
T ss_pred HHHcCCCCCC
Confidence 9999988654
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-66 Score=585.02 Aligned_cols=547 Identities=17% Similarity=0.223 Sum_probs=446.2
Q ss_pred CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003315 202 VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYST 280 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 280 (831)
.++...|..+...+.+.|++++|+++|++|.+.|+ +++..+++.++.+|.+.|..++|+.+|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 45677788888888899999999999999988774 46777788888899999999999999988863 89999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003315 281 CIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGK 360 (831)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 360 (831)
++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 003315 361 INKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKD--MGFFLNKVCYDVIVDSLCKLGEVEKAMILF 438 (831)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 438 (831)
+++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|.+|.. .++.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876 578889999999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003315 439 KEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEP 518 (831)
Q Consensus 439 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 518 (831)
++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 003315 519 NFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLI 598 (831)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 598 (831)
+..+|+.+|.+|++.|++++|.++|+ +|.+.|..||..+|+.++.+|++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~-------------------------------eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYE-------------------------------DIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHH-------------------------------HHHHcCCCCCHHHHHHHHHHHHH
Confidence 98888888887777776666655554 45555666677777777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 003315 599 LRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDV 678 (831)
Q Consensus 599 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 678 (831)
.|++++|.+++++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++++..|. +++++|..+
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l 809 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACAL 809 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhh
Confidence 777777777777777777777777777777777777777777777777777777777777777775433 245555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 003315 679 FNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLE 758 (831)
Q Consensus 679 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 758 (831)
.+.+.... + +... ....-.++|..+|++|.+.|+.||..+|+.++.++++.+..+
T Consensus 810 ~~~v~~f~--~----------g~~~-------------~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~ 864 (1060)
T PLN03218 810 GEPVVSFD--S----------GRPQ-------------IENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDAT 864 (1060)
T ss_pred hhhhhhhh--c----------cccc-------------cccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHH
Confidence 44433210 0 0000 001224568888888888888888888888887777888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003315 759 DGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 759 ~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
.+.++++.|...+..|+..+|++|+.++.+. .++|..++++|...|+.|+..
T Consensus 865 ~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 865 LRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8888888887777778888888888887432 357888888888888888774
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.4e-65 Score=573.60 Aligned_cols=546 Identities=17% Similarity=0.236 Sum_probs=492.6
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGF-VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
.+...|..+...+++.|++++|+++|++|.+.|. .++...++.++..+.+.|..++|..+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 3456778888889999999999999999999985 46777788899999999999999999999874 899999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
+.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 003315 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTS--KGIKTNCGVLSVILKGLCQKGMASATIKQFL 404 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 404 (831)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 6899999999999999999999999999999
Q ss_pred HHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCC
Q 003315 405 EFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPD 484 (831)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 484 (831)
.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhc
Q 003315 485 IITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKT 564 (831)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 564 (831)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e--------------------------- 736 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP--------------------------- 736 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH---------------------------
Confidence 99999999999999999999999999999999999998888777776665555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003315 565 GHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVF 644 (831)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 644 (831)
+|.++|++|...|..||..+|..++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|. +++++|..+.
T Consensus 737 ----eAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~ 810 (1060)
T PLN03218 737 ----KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALG 810 (1060)
T ss_pred ----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhh
Confidence 5555666777788899999999999999999999999999999999999999999999987654 2456665554
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHH
Q 003315 645 NVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVD 724 (831)
Q Consensus 645 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (831)
+.+...+. +......+..++|+.+|++|++.|+.||..||+.++..+++ .++...
T Consensus 811 ~~v~~f~~----------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~---------------~~~~~~ 865 (1060)
T PLN03218 811 EPVVSFDS----------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQL---------------PHDATL 865 (1060)
T ss_pred hhhhhhhc----------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc---------------cccHHH
Confidence 44432210 11111223456799999999999999999999999955543 566888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003315 725 ASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTV 777 (831)
Q Consensus 725 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 777 (831)
+..++++|...+..|+..+|+++|+++++. .++|+.++++|.+.|+.|+..
T Consensus 866 ~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 866 RNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 899999988888899999999999998543 468999999999999999975
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-59 Score=531.94 Aligned_cols=512 Identities=20% Similarity=0.299 Sum_probs=419.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 003315 238 LNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAG-VTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVV 316 (831)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (831)
.+..+|+.++.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 344566666666666666777777776666543 5566677777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 003315 317 IRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMA 396 (831)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 396 (831)
+.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|+++|++|.+.|+.|+..++..++.+|...|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 7777777777777777777753 577788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 003315 397 SATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEM 476 (831)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 476 (831)
+.+.+++..+.+.|..+|..+|+.|+++|++.|++++|.++|++|.. +|..+|+.+|.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 88888888888888888999999999999999999999999999975 48999999999999999999999999999
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHH
Q 003315 477 KEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSA 556 (831)
Q Consensus 477 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 556 (831)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..+++.++.+|++.|++++|.++|++|.+.+..+||.
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887766666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003315 557 MINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEE 636 (831)
Q Consensus 557 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 636 (831)
|+.+|++.|+.++|+++|++|.+ .|+.||..||+.++.+|.+.|+
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~-----------------------------------~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIA-----------------------------------EGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-----------------------------------hCCCCCHHHHHHHHHHHhcCCc
Confidence 77777777766666666655554 4567899999999999999999
Q ss_pred HHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCch
Q 003315 637 MEQAQLVFNVLVD-KGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDA 715 (831)
Q Consensus 637 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 715 (831)
+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|+.++.+|..
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~------------ 506 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRI------------ 506 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH------------
Confidence 9999999999985 689999999999999999999999999998876 478999999999999987
Q ss_pred hhcccCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHH-------HHHH
Q 003315 716 LQCKEDVVDASVFWNEMKEMGIRPD-VISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTV-TYTAL-------LCGY 786 (831)
Q Consensus 716 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l-------~~~~ 786 (831)
.++++.|..+++++.+ +.|+ ..+|+.++.+|++.|++++|.+++++|.+.|++..+. +|..+ +.+-
T Consensus 507 ---~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 507 ---HKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred ---cCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 5678899999888864 4554 5699999999999999999999999999999865432 22111 1110
Q ss_pred Hhc----CCHHHHHHHHHHHHhCCCCCCHH
Q 003315 787 LAK----GDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 787 ~~~----g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
..+ .-++...++..+|.+.|..||..
T Consensus 582 ~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 582 RLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 011 11355667888899999999854
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-58 Score=522.84 Aligned_cols=601 Identities=19% Similarity=0.260 Sum_probs=486.8
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHH
Q 003315 115 HNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILF 194 (831)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 194 (831)
.+..+|+.++..+.+.|++++|..++..+.... +..++..+|+.++.+|.+.++++.|..++.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~-----------------~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~ 147 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGC-----------------PFTLPASTYDALVEACIALKSIRCVKAVYW 147 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC-----------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 456688999999999999999999998765432 234577899999999999999999999999
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 003315 195 QINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPN 274 (831)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 274 (831)
.+.+.|+.||..+++.++..|.+.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+
T Consensus 148 ~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~ 223 (697)
T PLN03081 148 HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223 (697)
T ss_pred HHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999964 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003315 275 AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISG 354 (831)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 354 (831)
..+|+.++.++++.|+.+.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|++|.+ +|..+|+++|.+
T Consensus 224 ~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~ 299 (697)
T PLN03081 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAG 299 (697)
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999964 589999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHH
Q 003315 355 YCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKA 434 (831)
Q Consensus 355 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 434 (831)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|..+|..+|+.|+++|++.|++++|
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 003315 435 MILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKR- 513 (831)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 513 (831)
.++|++|.+ ||..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+
T Consensus 380 ~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 380 RNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 999999875 588899999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 003315 514 HGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLI 593 (831)
Q Consensus 514 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (831)
.|+.|+..+|+.++.+|++.|++++|.++++++
T Consensus 456 ~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----------------------------------------------- 488 (697)
T PLN03081 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----------------------------------------------- 488 (697)
T ss_pred cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-----------------------------------------------
Confidence 688899888888888888888888777665432
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 003315 594 TNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLR 673 (831)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 673 (831)
+..|+..+|+.|+.+|...|+++.|..+++++.+.++. +..+|+.|++.|++.|+++
T Consensus 489 ----------------------~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 489 ----------------------PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred ----------------------CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHH
Confidence 24789999999999999999999999999999765332 5779999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--
Q 003315 674 EARDVFNDMKQRGITPD-VVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAK-- 750 (831)
Q Consensus 674 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-- 750 (831)
+|.+++++|.+.|++.. ..+|..+-.. .......+..+ ....+-++...++..+|++.|+.||......=+.-
T Consensus 546 ~A~~v~~~m~~~g~~k~~g~s~i~~~~~---~~~f~~~d~~h-~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~ 621 (697)
T PLN03081 546 EAAKVVETLKRKGLSMHPACTWIEVKKQ---DHSFFSGDRLH-PQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDE 621 (697)
T ss_pred HHHHHHHHHHHcCCccCCCeeEEEECCe---EEEEccCCCCC-ccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHH
Confidence 99999999999998643 2222111000 00000000000 01223356677788888999999986532100000
Q ss_pred -----HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhc
Q 003315 751 -----LCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGI-QGDDYTKSSLERGIEKA 824 (831)
Q Consensus 751 -----~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~pd~~~~~~l~~~~~~~ 824 (831)
+....++.-|..++. .+|...+ .++.-+.-.||-..|.++..+...+.| .-|..-+++...|-+.+
T Consensus 622 ~~~~~~~hsekla~a~~l~~------~~~~~~i--~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc 693 (697)
T PLN03081 622 EKVSGRYHSEKLAIAFGLIN------TSEWTPL--QITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSC 693 (697)
T ss_pred HHHHHHhccHHHHHHhhCcc------CCCCCeE--EEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccc
Confidence 000001111111110 1111110 112334456777888888888776654 34555566655555555
Q ss_pred cc
Q 003315 825 RI 826 (831)
Q Consensus 825 ~~ 826 (831)
|+
T Consensus 694 ~d 695 (697)
T PLN03081 694 GD 695 (697)
T ss_pred cc
Confidence 54
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.5e-41 Score=401.17 Aligned_cols=714 Identities=13% Similarity=0.047 Sum_probs=553.0
Q ss_pred CCCChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHH----
Q 003315 80 SYLNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEAT---- 155 (831)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---- 155 (831)
...........++...|+++.|+..++.+...+ +.+...+..++.++...|++++|...+..++...|.......
T Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 235 (899)
T TIGR02917 157 RSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALAT 235 (899)
T ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 334445555566667788888888888776543 346677777777888888888888888887776553221111
Q ss_pred ------------HHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhH
Q 003315 156 ------------DLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDM 223 (831)
Q Consensus 156 ------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 223 (831)
..++.+... .+.++......+..+...|++++|+..|+++.+.++. +...+..+...+...|++++
T Consensus 236 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~ 313 (899)
T TIGR02917 236 ILIEAGEFEEAEKHADALLKK-APNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQ 313 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHH
Confidence 111111111 1223344455566667778888888888887776543 34445556667778888888
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003315 224 ALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEE 303 (831)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (831)
|...|+.+.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.|+++.+
T Consensus 314 A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 391 (899)
T TIGR02917 314 AYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATE 391 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888888877653 4456677777788888888888888888887654 44667778888888888888888888888887
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 003315 304 ADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVL 383 (831)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 383 (831)
.+ |.+...+..+...+...|++++|.+.++.+.+..+. .......++..+.+.|++++|..+++.+.... +.+..++
T Consensus 392 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 468 (899)
T TIGR02917 392 LD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLH 468 (899)
T ss_pred cC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHH
Confidence 64 556777888888888888888888888888876543 34455667788888889999988888887653 3456778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 003315 384 SVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQ 463 (831)
Q Consensus 384 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 463 (831)
..+...+...|+.++|.+.|+++.+.... +...+..++..+...|++++|.+.++++..... .+...+..+...+.+.
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 546 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRT 546 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHc
Confidence 88888888999999999999988876433 556677788888899999999999998876543 3667788888888889
Q ss_pred CChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003315 464 GKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFL 543 (831)
Q Consensus 464 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 543 (831)
|+.++|...++++...++ .+...+..++..+...|++++|..+++.+.+.. +.+..++..+..++.+.|++++|...+
T Consensus 547 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999877654 366677788888999999999999999988754 567788888888999999999999999
Q ss_pred HHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 544 DGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPS 620 (831)
Q Consensus 544 ~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 620 (831)
+++.+.+|.. +..++..+.+.|++++|...++++.+..+. +..++..++..+...|++++|..+++.+.... +.+
T Consensus 625 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 702 (899)
T TIGR02917 625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKA 702 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 9888776654 777888888999999999999998887654 67788888899999999999999999988775 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003315 621 KSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDA 700 (831)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 700 (831)
...+..++..+...|++++|...|+.+.+.+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~ 779 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAEL 779 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 7778888899999999999999999998864 455777788899999999999999999988752 3455666666666
Q ss_pred hhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003315 701 HSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYT 780 (831)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~ 780 (831)
+.. .++.++|..+|+++.+.. +++...++.+++.+.+.|+ ++|+++++++.+. .+.++.++.
T Consensus 780 ~~~---------------~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~ 841 (899)
T TIGR02917 780 YLA---------------QKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILD 841 (899)
T ss_pred HHH---------------CcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHH
Confidence 654 577999999999998764 4567789999999999999 8899999999875 333577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccccc
Q 003315 781 ALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKARILQY 829 (831)
Q Consensus 781 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~~~~~~ 829 (831)
.++..+...|++++|.++++++.+.+.. +..++..+..++.+.|+++.
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999986533 78888899999999998754
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.7e-40 Score=393.78 Aligned_cols=707 Identities=13% Similarity=0.067 Sum_probs=410.2
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHH--------
Q 003315 87 VVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLI-------- 158 (831)
Q Consensus 87 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------- 158 (831)
.....+...|+++.|+..|..+.+.. +.++..+..++.++...|++++|...+.++++..++.. .....+
T Consensus 27 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~a~~~~~~g 104 (899)
T TIGR02917 27 EAAKSYLQKNKYKAAIIQLKNALQKD-PNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKN-QVLPLLARAYLLQG 104 (899)
T ss_pred HHHHHHHHcCChHhHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChh-hhHHHHHHHHHHCC
Confidence 33455556677777777777666443 23666666677777777777777777776666544321 111111
Q ss_pred ------HHHh---cCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHH
Q 003315 159 ------EALC---GEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQ 229 (831)
Q Consensus 159 ------~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 229 (831)
..+. ....+.....+..++..+...|++++|...|+++.+.++. +..++..++..+...|++++|..+++
T Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (899)
T TIGR02917 105 KFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALAENRFDEARALID 183 (899)
T ss_pred CHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 0110 1122334567777888888888888888888888777643 56677777788888888888888888
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 003315 230 HLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS 309 (831)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 309 (831)
++.+.. +++...+..+...+...|++++|.+.|+++.+.. +.+..++..++..+...|++++|...++.+.+.. +.+
T Consensus 184 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 260 (899)
T TIGR02917 184 EVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNS 260 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 877653 4566677777777888888888888888877654 4456677777777777888888887777777653 334
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 003315 310 AFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKG 389 (831)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 389 (831)
...+......+...|++++|...|+++.+.++. +...+..+...+...|++++|...++.+.+... .+......+...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~ 338 (899)
T TIGR02917 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASI 338 (899)
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 444444455555666666666666666654322 222333344445555555555555555554322 123334444445
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH-----------
Q 003315 390 LCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMIC----------- 458 (831)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~----------- 458 (831)
+...|++++|...+..+..... .+...+..+...+.+.|++++|.+.|+++.+... .+...+..+..
T Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEA 416 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHH
Confidence 5555555555555555544332 2344444555555555555555555555443321 13333444444
Q ss_pred -----------------------HHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003315 459 -----------------------GYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHG 515 (831)
Q Consensus 459 -----------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 515 (831)
.+.+.|++++|..+++++.... +.+..++..+...+...|++++|.+.++++.+..
T Consensus 417 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 417 IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 4444455555555555444432 1244455555555555555555555555555442
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 003315 516 LEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKL 592 (831)
Q Consensus 516 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (831)
+.+...+..+...+...|++++|.+.++++...+|.. +..++..+.+.|++++|...++++.+.++. +...+..+
T Consensus 496 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 573 (899)
T TIGR02917 496 -PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALAL 573 (899)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHH
Confidence 3334444455555555566666666655555544433 444555555566666666666665554432 44455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 003315 593 ITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCL 672 (831)
Q Consensus 593 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 672 (831)
+..+...|++++|..+++.+.+.. +.+..+|..++.+|...|++++|...|+++.+.... +...+..++..|.+.|++
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCH
Confidence 666666666666666666665533 344555666666666666666666666666654322 455566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003315 673 REARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLC 752 (831)
Q Consensus 673 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 752 (831)
++|...|+++.+.. +.+..++..+...+.. .+++++|.++++.+.+.+ +++...+..++..+.
T Consensus 652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~---------------~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 652 AKAITSLKRALELK-PDNTEAQIGLAQLLLA---------------AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH---------------cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 66666666665531 2234444455444443 455666777776666543 344556666666777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccc
Q 003315 753 NTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKARILQ 828 (831)
Q Consensus 753 ~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~~~~~ 828 (831)
+.|++++|++.++++.+. .|+..++..++.++.+.|++++|.+.++++.+. .+.+...+..+...+.+.|+++
T Consensus 715 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHH
Confidence 777777777777777653 344456666667777777777777777776663 2334445555666666666543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2e-29 Score=299.95 Aligned_cols=651 Identities=12% Similarity=0.019 Sum_probs=379.9
Q ss_pred HHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcch
Q 003315 90 KLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLL 169 (831)
Q Consensus 90 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (831)
.+....++++.|.+.+.++....+ .++.++..+++++...|+.++|...+.++++..|+.. .+..+...+. -..+.
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~-~~~~~~~~~~--~~~~~ 111 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSN-AYRSSRTTML--LSTPE 111 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHH--hcCCc
Confidence 455677999999999999986543 3899999999999999999999999999999866532 2222111111 11223
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChh-hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSIC-SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
......+++.+.+.|++++|+..|+++.+.+++ +.. ............|+.++|++.|+++.+.. |.++..+..+..
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 334567788899999999999999999887543 332 22122222334589999999999999864 557778889999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH--------------------HHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTC--------------------IEGLCMNGMLDLGYELLLKWEEADIPL 308 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 308 (831)
.+...|++++|++.++++.+... .+...-... +..+-.....+.|...+.+.......|
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~-~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPA-GRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCC-chHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999876421 111111111 111111112333444444433321112
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhH----
Q 003315 309 SAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNC-GVL---- 383 (831)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~---- 383 (831)
.. ........+...|++++|+..|++..+..+. +...+..+..+|.+.|++++|+..|++.++....... ..+
T Consensus 269 ~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 269 AF-RARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred ch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 21 1123456667788888888888888876443 6777788888888888888888888888765433211 111
Q ss_pred --------HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 003315 384 --------SVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTT 455 (831)
Q Consensus 384 --------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 455 (831)
......+.+.|++++|+..|+++....+. +...+..+..++...|++++|++.|+++.+... .+...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~ 424 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRG 424 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 11233455667777777777777665432 445556666777777777777777777665422 23344444
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCC--------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 456 MICGYCLQGKLGDALDLFKEMKEMGHK--------PDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMII 527 (831)
Q Consensus 456 li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 527 (831)
+...|. .++.++|...++.+...... .....+..+...+...|++++|++.++++++.. +.+...+..+.
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA 502 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLA 502 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 555443 34566776666554322100 011223444555666667777777776666653 33455555666
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 003315 528 EGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNN 604 (831)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 604 (831)
..|.+.|++++|+..++++....|.. +..+...+...+++++|+..++++......++...+.
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~-------------- 568 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA-------------- 568 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH--------------
Confidence 66666677777776666666555543 3333344455666666666666543221111100000
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 605 ALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 605 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
.+ .....+..+...+...|+.++|..+++. .+++...+..+...+.+.|++++|+..|++.++
T Consensus 569 -----~~-------l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 569 -----QR-------LQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred -----HH-------HhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 0000112234445555555555555541 122344445555555555666666666655554
Q ss_pred CCCCC-CHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 003315 685 RGITP-DVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRP-DVISYTVLIAKLCNTQNLEDGIT 762 (831)
Q Consensus 685 ~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 762 (831)
. .| +...+..+...+.. .+++++|.+.++.+.+. .| +...+..+..++...|++++|.+
T Consensus 632 ~--~P~~~~a~~~la~~~~~---------------~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 632 R--EPGNADARLGLIEVDIA---------------QGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred h--CCCCHHHHHHHHHHHHH---------------CCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 3 23 23333344444333 34455555555554432 22 23344556666667777777777
Q ss_pred HHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 763 VFNEISDRGL--EP---DTVTYTALLCGYLAKGDLDRAIALVDEMS 803 (831)
Q Consensus 763 ~~~~~~~~g~--~p---d~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 803 (831)
+++++.+..- .| +..++..+...+...|+.++|++.|++..
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777765321 11 12345555666777777777777777664
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.3e-27 Score=284.46 Aligned_cols=622 Identities=11% Similarity=0.004 Sum_probs=456.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhH--------
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTY-------- 243 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------- 243 (831)
.....++.+...++.+.|.+.+.++....+. ++.++..++..+.+.|+.++|.+.++++.+.. |.+...+
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHh
Confidence 4567778888999999999999999988755 78888889999999999999999999998865 3333322
Q ss_pred --------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 003315 244 --------VIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFA-YSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYT 314 (831)
Q Consensus 244 --------~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 314 (831)
..+.+.+.+.|++++|++.|+++.+.+ +|+... ...........|+.++|++.++++.+.. |.+...+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 334456788999999999999998753 344321 1111222334689999999999999985 67788899
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHH-----------------HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 315 VVIRWFCDQNKLEKAECVLLHMEKQGVVPD--VYA-----------------YSALISGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 315 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~-----------------~~~li~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
.+...+...|+.++|.+.++++.+...... ... +...+..+-.....+.|...+.......
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999876421100 001 1111111222223445555555554433
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHH
Q 003315 376 IKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVP-DVVNYT 454 (831)
Q Consensus 376 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 454 (831)
..|+.. .......+...|++++|+..|++.++..+. +...+..+..++.+.|++++|+..|++..+..... ....|.
T Consensus 266 ~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 266 ADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred cCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 333322 123456677899999999999999887543 67888899999999999999999999988753321 111121
Q ss_pred ------------HHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003315 455 ------------TMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVT 522 (831)
Q Consensus 455 ------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 522 (831)
.....+.+.|++++|...|+++.+..+. +...+..+...+...|++++|++.++++++.. +.+...
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a 421 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNA 421 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 2234567899999999999999987543 56677788899999999999999999999864 445666
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCC------------CCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHH
Q 003315 523 HNMIIEGLCMGGRVEEAEAFLDGLKGKC------------LENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCN 590 (831)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 590 (831)
+..+...+. .++.++|..+++.+.... ...+..++..+...|++++|++.|+++.+..+. ++..+.
T Consensus 422 ~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~ 499 (1157)
T PRK11447 422 VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTY 499 (1157)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 666776664 467899999888765432 122556778888999999999999999998765 677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---------HHHH
Q 003315 591 KLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLV---------TYTM 661 (831)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~~ 661 (831)
.+...+...|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+......++.. .+..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 99999999999999999999998764 3345555555566788999999999998875432222221 2234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCH
Q 003315 662 MIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDV 741 (831)
Q Consensus 662 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 741 (831)
+...+...|+.++|+.+++. .+++...+..+-..+. ..+++++|+..+++..+.. +.+.
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~---------------~~g~~~~A~~~y~~al~~~-P~~~ 637 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQ---------------QRGDYAAARAAYQRVLTRE-PGNA 637 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHhC-CCCH
Confidence 56788899999999999882 2233334444444443 3688999999999999753 3356
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----CHHHHH
Q 003315 742 ISYTVLIAKLCNTQNLEDGITVFNEISDRGLEP-DTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQ-G----DDYTKS 815 (831)
Q Consensus 742 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p----d~~~~~ 815 (831)
..+..++.++...|++++|++.++++.+. .| +..++..+..++...|++++|.++++++....-. | +...+.
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~ 715 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLR 715 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHH
Confidence 78999999999999999999999998863 44 4667788899999999999999999999874211 2 123455
Q ss_pred HHHHHHHhcccc
Q 003315 816 SLERGIEKARIL 827 (831)
Q Consensus 816 ~l~~~~~~~~~~ 827 (831)
.+.+.+.+.|+.
T Consensus 716 ~~a~~~~~~G~~ 727 (1157)
T PRK11447 716 DAARFEAQTGQP 727 (1157)
T ss_pred HHHHHHHHcCCH
Confidence 556666666554
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.3e-25 Score=254.00 Aligned_cols=648 Identities=10% Similarity=0.001 Sum_probs=406.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcC
Q 003315 85 REVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGE 164 (831)
Q Consensus 85 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (831)
...-..++..+|+++.|+..|+.+.+..+. ++.++..+++++...|+.++|...+++.++.+|.
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~--------------- 110 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG--------------- 110 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc---------------
Confidence 333446667779999999999999876544 6999999999999999999999999999988553
Q ss_pred CCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHH--------HHHcCChhHHHHHHHHHHhcCC
Q 003315 165 GSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQ--------LVECGKVDMALAVYQHLKRLGL 236 (831)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~~ 236 (831)
+...+..++ ..+++++|+.+|+++.+..+. +..++..+... |.+. ++|.+.++ ......
T Consensus 111 ----n~~~~~~La----~i~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~ 177 (987)
T PRK09782 111 ----DARLERSLA----AIPVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAA 177 (987)
T ss_pred ----cHHHHHHHH----HhccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCC
Confidence 233333332 229999999999999998755 66667666666 5555 55555555 333222
Q ss_pred CCChhhHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCChhhHH
Q 003315 237 SLNEYTYV-IVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM-NGMLDLGYELLLKWEEADIPLSAFAYT 314 (831)
Q Consensus 237 ~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~ 314 (831)
.|++.+.. .+.+.|.+.|++++|++.++++.+.+ +.+......|..+|.. .++ +++..+++. ....++..+.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHH
Confidence 33444444 44899999999999999999999986 4455557777778887 466 777777553 2335788999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChH-HHHHHHHHHHhCCCCCCH-hhHHHHHHHHH
Q 003315 315 VVIRWFCDQNKLEKAECVLLHMEKQGVV-PDVYAYSALISGYCKFGKIN-KALLLHHEMTSKGIKTNC-GVLSVILKGLC 391 (831)
Q Consensus 315 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~ 391 (831)
.++..|.+.|+.++|.++++++...-.. |+..+|.-++ .+.+... .|..-|.+ ...++. ......+..+.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 324 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL---SKYSANPVQALANYTV----QFADNRQYVVGATLPVLL 324 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH---HhccCchhhhccchhh----hhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998654222 4444443322 2222221 11111111 000000 01112234444
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhH
Q 003315 392 QKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSL--CKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDA 469 (831)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 469 (831)
+.++++.+.++.. ..|.... ...... ...+...++...++.|.... +-+......+.....++|+.++|
T Consensus 325 ~~~~~~~~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a 395 (987)
T PRK09782 325 KEGQYDAAQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREA 395 (987)
T ss_pred hccHHHHHHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 5555553333211 1111111 111111 12233444444444443321 11222333333334455555555
Q ss_pred HHHHHHHHHcC--CCCCcchHHHHHHHHHhcCC-------------------------HHHHH---HHHHHHHHCCCCC-
Q 003315 470 LDLFKEMKEMG--HKPDIITYNVLAGAFAQYGA-------------------------VQKAF---DLLNYMKRHGLEP- 518 (831)
Q Consensus 470 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~-------------------------~~~a~---~~~~~~~~~~~~~- 518 (831)
.++|+...... -.++......++..|.+.+. ..++. ..+...... .++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~ 474 (987)
T PRK09782 396 ADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPS 474 (987)
T ss_pred HHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCC
Confidence 55555554420 11111222244444444433 22222 222222222 134
Q ss_pred -CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 003315 519 -NFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGY--CKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITN 595 (831)
Q Consensus 519 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 595 (831)
+...+..+..++.. ++.++|...+.+.....|+.++.+..++ ...|++++|...|+++.... |+...+..++..
T Consensus 475 ~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~a 551 (987)
T PRK09782 475 YDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANT 551 (987)
T ss_pred CCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHH
Confidence 56677777767666 7888888888887777777766655444 47888888888888875542 334456667777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 003315 596 LLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREA 675 (831)
Q Consensus 596 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 675 (831)
+...|+.++|...++++.+.+ +.+...+..+...+...|++++|...++++++. .|+...|..+..++.+.|++++|
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888888764 223333333444445568888888888888876 45677888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHH-HHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003315 676 RDVFNDMKQRGITPDVVT-YTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNT 754 (831)
Q Consensus 676 ~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 754 (831)
+..+++.++. .|+... +..+-..+.. .++.++|+..+++..+.. +-+...+..+..++...
T Consensus 629 ~~~l~~AL~l--~Pd~~~a~~nLG~aL~~---------------~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 629 VSDLRAALEL--EPNNSNYQAALGYALWD---------------SGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 8888888874 565444 3333334433 567888888888887643 23445778888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003315 755 QNLEDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 755 g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
|++++|+..++++.+ ..|+ ..+.........+..+++.|.+.++.... +.|+.+
T Consensus 691 Gd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~ 745 (987)
T PRK09782 691 DDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSS 745 (987)
T ss_pred CCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccch
Confidence 888888888888886 4565 35566667777777778888887777666 666666
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.7e-24 Score=244.80 Aligned_cols=617 Identities=11% Similarity=-0.000 Sum_probs=438.8
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 003315 122 AIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGF 201 (831)
Q Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 201 (831)
..+..+...|++++|...|+++++.+|. ++.++..+++.|...|++++|+..++++.+.++
T Consensus 49 ~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-------------------n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP 109 (987)
T PRK09782 49 DKALKAQKNNDEATAIREFEYIHQQVPD-------------------NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP 109 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 3444555668999999999999998765 456778999999999999999999999999875
Q ss_pred CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH--------HHhcCChHHHHHHHHHHHhCCCCC
Q 003315 202 VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA--------LCKKGSMQEAVEVFLEMEKAGVTP 273 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~m~~~~~~p 273 (831)
.|...+..+... +++++|..+|+++.+.. |.+...+..+... |.+. ++|.+.++ .......|
T Consensus 110 -~n~~~~~~La~i----~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~ 179 (987)
T PRK09782 110 -GDARLERSLAAI----PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASP 179 (987)
T ss_pred -ccHHHHHHHHHh----ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCC
Confidence 366655554322 99999999999999864 4456666666655 5555 55555555 33333344
Q ss_pred CHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003315 274 NAFAYSTC-IEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD-QNKLEKAECVLLHMEKQGVVPDVYAYSAL 351 (831)
Q Consensus 274 ~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 351 (831)
+..+.... ...|.+.|++++|+.++.++.+.+ +.+......|...|.. .++ +++..+++.. +..+...+..+
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~al 253 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITY 253 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHH
Confidence 55555555 899999999999999999999997 6677778888888888 477 8888886642 23488899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCChH-HHHHHHHHHHHCCCCcC-HhhHHHHHHHHHhc
Q 003315 352 ISGYCKFGKINKALLLHHEMTSKGIK-TNCGVLSVILKGLCQKGMAS-ATIKQFLEFKDMGFFLN-KVCYDVIVDSLCKL 428 (831)
Q Consensus 352 i~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 428 (831)
+..|.+.|+.++|..+++++...... |...++...+ .+.+... .+..-+..- ..++ ....-.++..+.+.
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 326 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL---SKYSANPVQALANYTVQ----FADNRQYVVGATLPVLLKE 326 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH---HhccCchhhhccchhhh----hHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998654333 4444444433 3333322 111111110 0001 11122347888899
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 003315 429 GEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLL 508 (831)
Q Consensus 429 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 508 (831)
++++.+.++.. ..|.....-.-..+....+...++.+.++.|....+. +......+.-...+.|+.++|..++
T Consensus 327 ~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~ 399 (987)
T PRK09782 327 GQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLL 399 (987)
T ss_pred cHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHH
Confidence 99997776522 2222222211122233447778888888888775332 5555555666678899999999999
Q ss_pred HHHHHC-C-CCCCHHHHHHHHHHHHcCCC---HHHHH-------------------------HHHHHhhhCCCC--C---
Q 003315 509 NYMKRH-G-LEPNFVTHNMIIEGLCMGGR---VEEAE-------------------------AFLDGLKGKCLE--N--- 553 (831)
Q Consensus 509 ~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~a~-------------------------~~~~~~~~~~~~--~--- 553 (831)
+..... + -..+......++..|.+.+. ..++. ..+..+....|. .
T Consensus 400 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a 479 (987)
T PRK09782 400 LQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA 479 (987)
T ss_pred HHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH
Confidence 998762 1 22344556677777777655 22222 222333333344 2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQ 633 (831)
Q Consensus 554 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 633 (831)
|..++.++.. ++.++|+..+.+.....+ +......++..+...|++++|...++++... +|+...+..++.++.+
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~~P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~ 554 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQRQP--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHhCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHH
Confidence 6777777776 899999998888887753 4333444455557899999999999998664 4555556677888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCC
Q 003315 634 AEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSP 713 (831)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 713 (831)
.|+.++|...++++++.++. +...+..+.....+.|++++|+..+++.++ +.|+...+..+-..+.+
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~---------- 621 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQ---------- 621 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH----------
Confidence 99999999999999986422 333333444455566999999999999997 46776667666666655
Q ss_pred chhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003315 714 DALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLD 793 (831)
Q Consensus 714 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~ 793 (831)
.+++++|...+++..+.. +-+...++.+..++...|++++|++.++++.+. .+-++..+..+..++...|+++
T Consensus 622 -----lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 622 -----RHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred -----CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHH
Confidence 678999999999998753 334458899999999999999999999999984 2335888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHH
Q 003315 794 RAIALVDEMSVKGIQGDDYTK 814 (831)
Q Consensus 794 ~A~~~~~~~~~~g~~pd~~~~ 814 (831)
+|+..+++..+ +.|+..-.
T Consensus 695 eA~~~l~~Al~--l~P~~a~i 713 (987)
T PRK09782 695 ATQHYARLVID--DIDNQALI 713 (987)
T ss_pred HHHHHHHHHHh--cCCCCchh
Confidence 99999999998 77877443
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.5e-21 Score=199.33 Aligned_cols=559 Identities=11% Similarity=0.019 Sum_probs=369.1
Q ss_pred ChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCcChhhHH
Q 003315 132 WQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYV--SVGMFDEGIDILFQINRRGFVWSICSCN 209 (831)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (831)
+.+.|...|..+++..|+ + +...+++++. ..|+|..|+.+|..++...+..-+...-
T Consensus 145 ~~~~A~a~F~~Vl~~sp~-------------------N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI 203 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQSPD-------------------N--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI 203 (1018)
T ss_pred cHHHHHHHHHHHHhhCCc-------------------c--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc
Confidence 357777778777777443 1 2335666664 5778999999999987765443333444
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 210 YFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK---GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLC 286 (831)
Q Consensus 210 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (831)
.+...+.+.++.+.|+..|++.++.+ |.++.++..|...-... ..+..++..+...-..+ ..+++..+.|..-|.
T Consensus 204 gig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fy 281 (1018)
T KOG2002|consen 204 GIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFY 281 (1018)
T ss_pred hhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHh
Confidence 56677889999999999999988864 23334444443333333 33566777776665543 457778888888899
Q ss_pred hcCChhHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003315 287 MNGMLDLGYELLLKWEEADI--PLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKA 364 (831)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 364 (831)
-.|+++.+..+...+..... +.-...|..+.++|-..|++++|...|.+..+....--+..+..+.++|.+.|+++.+
T Consensus 282 fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 282 FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHH
Confidence 99999999999888877631 1224568889999999999999999998888763221133445578889999999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 365 LLLHHEMTSKGIKTNCGVLSVILKGLCQKG----MASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKE 440 (831)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (831)
...|+.+.+.. +.+..+...+...|...+ ..+.|..++....+.- +.|...|-.+...+...+-+.. +..|..
T Consensus 362 ~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~ 438 (1018)
T KOG2002|consen 362 KFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGN 438 (1018)
T ss_pred HHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHH
Confidence 99999988763 335566767777776664 4455566665555543 3466677777777655544333 666654
Q ss_pred HH----hCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHc---CCCCCcc------hHHHHHHHHHhcCCHHHHHHH
Q 003315 441 MK----DRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEM---GHKPDII------TYNVLAGAFAQYGAVQKAFDL 507 (831)
Q Consensus 441 ~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~------~~~~l~~~~~~~g~~~~a~~~ 507 (831)
.. ..+..+.+...|.+...+...|+++.|...|...... ...+|.. +-..+...+-..++++.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 43 3344466778888888888888998888888887654 1222331 122245555667788888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC---CCCChHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 003315 508 LNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGK---CLENYSAMINGYCKTGHTKEAFQLFMRLSNQG-VL 583 (831)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 583 (831)
+..+++.. +.-...|..++.+....+...+|..+++.+... +|+.+..++..+.+...+..|.+-|..+.+.- ..
T Consensus 519 Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 519 YKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 88888763 333445555553444557778888888877655 34447777777887777777777666655442 22
Q ss_pred CCcccHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003315 584 VKKSSCNKLITNLLI------------LRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKG 651 (831)
Q Consensus 584 ~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 651 (831)
+|+.+...|+..+.. .+..++|+++|.++++.. +-+...-+.++-+++..|++.+|..+|.++.+..
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 466666667665543 234566777777777654 4566666777777788888888888888877753
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHH
Q 003315 652 LTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGI-TPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWN 730 (831)
Q Consensus 652 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 730 (831)
.. +..+|-.+.++|..+|++..|+++|+...+.-. ..+......|-.++.. .+.+.+|.+...
T Consensus 677 ~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~---------------~~~~~eak~~ll 740 (1018)
T KOG2002|consen 677 SD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE---------------AGKLQEAKEALL 740 (1018)
T ss_pred hh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH---------------hhhHHHHHHHHH
Confidence 32 556777778888888888888888877665422 2233444444455443 344566665555
Q ss_pred HHHH
Q 003315 731 EMKE 734 (831)
Q Consensus 731 ~m~~ 734 (831)
....
T Consensus 741 ~a~~ 744 (1018)
T KOG2002|consen 741 KARH 744 (1018)
T ss_pred HHHH
Confidence 5443
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.7e-20 Score=194.99 Aligned_cols=572 Identities=12% Similarity=0.056 Sum_probs=431.3
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHH
Q 003315 98 PKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMI 177 (831)
Q Consensus 98 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 177 (831)
.+.|...|..+.+.. ++|.....--++++...+++..|+..|..++...|....+ .....+
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD------------------~rIgig 206 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD------------------VRIGIG 206 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC------------------ccchhh
Confidence 589999999998653 3466666666778888999999999999988876643322 223556
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 178 KAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECG---KVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.++.+.|+.+.|+..|.++++.++ .++.++-.|...-.... .+..+...+...-... +.|+...+.|.+.|.-.|
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKK 284 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcc
Confidence 777899999999999999999986 36666655554443333 4566777777766543 568889999999999999
Q ss_pred ChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 003315 255 SMQEAVEVFLEMEKAGVT--PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
+++.+..+..-+...... .-...|-.+.++|...|++++|..+|.+..+.+-......+..+...+.+.|+++.+...
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 999999999998875311 123457889999999999999999999998875222255677889999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH--
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFG----KINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEF-- 406 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-- 406 (831)
|+.+.+..+. +..+...|...|...+ ..+.|..++.+..+.. ..|...|..+...+.....+.. +..|..+
T Consensus 365 fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d 441 (1018)
T KOG2002|consen 365 FEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALD 441 (1018)
T ss_pred HHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHH
Confidence 9999987443 6677888888887765 5677888888777654 3356666666666655544444 7666654
Q ss_pred --HHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChh------hHHHHHHHHHccCChhhHHHHHHH
Q 003315 407 --KDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR---QIVPDVV------NYTTMICGYCLQGKLGDALDLFKE 475 (831)
Q Consensus 407 --~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~ 475 (831)
...+..+.+...|.+...+...|++++|...|...... ...++.. +--.+...+-..++.+.|.+.+..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 45566688999999999999999999999999988764 2223331 222344555667899999999999
Q ss_pred HHHcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC---C
Q 003315 476 MKEMGHKPDI-ITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKC---L 551 (831)
Q Consensus 476 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~ 551 (831)
+.... |.. ..|..++......++..+|...+..+.... ..++.....+...+.+..++..|.+-|+.+.... +
T Consensus 522 Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~ 598 (1018)
T KOG2002|consen 522 ILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKT 598 (1018)
T ss_pred HHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCC
Confidence 98864 443 345555434445578889999999988753 5566667777778888888888888666665442 3
Q ss_pred CChHH--HHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003315 552 ENYSA--MINGYCK------------TGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNA 617 (831)
Q Consensus 552 ~~~~~--l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 617 (831)
++|.. |+..|.+ .+..++|+++|.+++...+. |...-+.++-+++..|++.+|..+|..+.+...
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 44544 4554432 34578999999999998877 888889999999999999999999999988653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003315 618 EPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK-GLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTV 696 (831)
Q Consensus 618 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 696 (831)
-...+|..+.++|..+|++..|.+.|+.+.+. ...-+......|..++.+.|.+.+|.+.+.......+....+.||.
T Consensus 678 -~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 678 -DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred -hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 34557888999999999999999999998864 4445788899999999999999999999998887544444555555
Q ss_pred HH
Q 003315 697 LF 698 (831)
Q Consensus 697 ll 698 (831)
.+
T Consensus 757 a~ 758 (1018)
T KOG2002|consen 757 AL 758 (1018)
T ss_pred HH
Confidence 44
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-21 Score=194.95 Aligned_cols=445 Identities=16% Similarity=0.131 Sum_probs=322.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
...|+.-..+.|++.+|.+.-..+-+.++. +......+-..+....+.++..+.-....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 446777778889999999887766555533 44445555566777777777655544444432 3456788889999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
.|++++|+..++.|++.. +.....|..+..++...|+.+.|...|.+.++.+ |........+...+-..|++++|...
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHHH
Confidence 999999999999998863 3356788888899999999999999988888875 43444555666667778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFF 412 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (831)
+.+.++..+. =...|+.|...+-.+|+...|+..|++.++.+ |+
T Consensus 207 YlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~--------------------------------- 250 (966)
T KOG4626|consen 207 YLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PN--------------------------------- 250 (966)
T ss_pred HHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--Cc---------------------------------
Confidence 8888775321 24567778888888888888888888877643 22
Q ss_pred cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHH
Q 003315 413 LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLA 492 (831)
Q Consensus 413 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 492 (831)
=...|-.|...|...+.++.|...|.+...... .....+..+...|..+|..|-|+..+++.++..+. =...|+.+.
T Consensus 251 -f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~Nla 327 (966)
T KOG4626|consen 251 -FLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLA 327 (966)
T ss_pred -chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHH
Confidence 123445566677777777777777777665422 24556666777777888888888888888775432 346788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHH
Q 003315 493 GAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKE 569 (831)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~ 569 (831)
.++-..|+..+|.+.+.+.+... +......+.+...|...|.+++|..+|....+..|+- .+.|...|.++|++++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHH
Confidence 88888888888888888887763 4456667777888888888888888888877776654 7778888888888888
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 570 AFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPS-KSMYDKLIGALCQAEEMEQAQLVFNVLV 648 (831)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 648 (831)
|+..++++....+. -...+..++..|-..|+.+.|++.+.+++..+ |. ....+.|...|-..|++.+|.+-+++++
T Consensus 407 Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 407 AIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 88888888776543 35667788888888888888888888888754 43 4567788888888999999999999888
Q ss_pred HCCCCCC-HhHHHHHHHHH
Q 003315 649 DKGLTPH-LVTYTMMIHGY 666 (831)
Q Consensus 649 ~~~~~p~-~~~~~~l~~~~ 666 (831)
+. +|| +..|..++.++
T Consensus 484 kl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 484 KL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred cc--CCCCchhhhHHHHHH
Confidence 85 444 34555454443
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.2e-21 Score=195.08 Aligned_cols=435 Identities=14% Similarity=0.082 Sum_probs=346.7
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHH
Q 003315 94 LRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLS 173 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (831)
+.|++..|+.....+-+.+.. +.+..-.+..++....+.+...+--...++. .+.-.++|
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-------------------~~q~ae~y 119 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-------------------NPQGAEAY 119 (966)
T ss_pred hccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhc-------------------cchHHHHH
Confidence 568999999988887665433 2233333444454444444333222222222 23456789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhh-HHHHHHHHHh
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYT-YVIVIKALCK 252 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 252 (831)
..++..+-..|++++|+..|+.+++..+. .+.+|..+..++...|+.+.|.+.|.+.++.+ |+... ..-+...+-.
T Consensus 120 sn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 120 SNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHh
Confidence 99999999999999999999999998755 88899999999999999999999999988853 55443 3444555666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
.|+.++|...|.++++.. +--.+.|+.|...+-.+|+...|+..|++..+.+ |.-...|..|...|-..+.+++|...
T Consensus 197 ~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHH
Confidence 899999999999998762 2335689999999999999999999999999986 55678999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFF 412 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (831)
+.+.....+. ....+..+...|..+|.+|-|+..|++.++..+. =...|+.+..++-..|++.+|.+.|.+.+.....
T Consensus 275 Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 275 YLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred HHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 9999876433 5667888889999999999999999999886432 2467899999999999999999999999887543
Q ss_pred cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCC-cchHHHH
Q 003315 413 LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPD-IITYNVL 491 (831)
Q Consensus 413 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l 491 (831)
.....+.|..++...|.+++|.++|....+-... -...++.|...|-++|++++|+..+++.+.. +|+ ...|+.+
T Consensus 353 -hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~Nm 428 (966)
T KOG4626|consen 353 -HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNM 428 (966)
T ss_pred -cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhc
Confidence 4567788999999999999999999988764221 3456788999999999999999999998875 454 4678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHH
Q 003315 492 AGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMING 560 (831)
Q Consensus 492 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~ 560 (831)
...|-..|+.+.|.+.+.+++..+ +.-...++.+...|-..|++.+|+.-+++..+..|+. |..++.+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 889999999999999999998764 3346678889999999999999999999998887765 4444443
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.2e-18 Score=195.18 Aligned_cols=254 Identities=15% Similarity=0.050 Sum_probs=184.8
Q ss_pred cCCHHHHHHHHHHHHhCC-C-CCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 003315 428 LGEVEKAMILFKEMKDRQ-I-VPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAF 505 (831)
Q Consensus 428 ~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 505 (831)
.+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++..+..+. ....|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 356778888888777643 1 223445666667777788888888888887775432 3456677777777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003315 506 DLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGV 582 (831)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (831)
..++.+++.. +.+..++..+...+...|++++|...|++....+|.. +..++..+.+.|++++|+..|++..+..+
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8888887764 4556777777778888888888888888888777765 55667777888888888888888877654
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003315 583 LVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKS------MYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHL 656 (831)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 656 (831)
. ++..+..++..+...|++++|+..+++++......+.. .++..+..+...|++++|..+++++++.++. +.
T Consensus 465 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~ 542 (615)
T TIGR00990 465 E-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CD 542 (615)
T ss_pred C-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cH
Confidence 3 56777788888888888888888888888764321111 1122222334468999999999998886433 45
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 657 VTYTMMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 657 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
..+..++..+.+.|++++|+..|++..+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 67888999999999999999999998764
No 18
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=8.2e-17 Score=169.05 Aligned_cols=647 Identities=11% Similarity=0.096 Sum_probs=375.0
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW 203 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 203 (831)
+..+...|+.++|..++.+++++.|. .+.+|..|+..|-..|+.+++...+-.+...++.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~-------------------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~- 205 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR-------------------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK- 205 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc-------------------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-
Confidence 33344456666777777766666443 4456666777777777777766666666655544
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHH
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAF----AYS 279 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~ 279 (831)
|..-|-.+.....+.|.++.|.-.|.+.++.. |++......-+..|-+.|+...|.+-|.++.....+.|.. ..-
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 44566666666666666777777776666653 3444444444555666677777777766666552111111 222
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC------------------
Q 003315 280 TCIEGLCMNGMLDLGYELLLKWEEA-DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG------------------ 340 (831)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------ 340 (831)
.+++.+...++-+.|.+.++..... +-..+...++.++..|.+...++.|......+....
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 2344455555556666666666552 123344556666666666666666666665554411
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 341 ---------VVPDVYAYSALISGYCKFGKINKALLLHHEMTSKG--IKTNCGVLSVILKGLCQKGMASATIKQFLEFKDM 409 (831)
Q Consensus 341 ---------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 409 (831)
..++.... .+.-++......+....+.....+.+ +.-+...+.-+..++...|++.+|+..+..+...
T Consensus 365 ~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred cccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 11222220 12222333344444444444444444 3334556777778888888888888888888777
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHH--------cCC
Q 003315 410 GFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKE--------MGH 481 (831)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~ 481 (831)
....+...|-.+..+|...|.+++|.+.|+.+..... .+......|...+-+.|+.++|.+.+..+.. .+.
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 6666777888888888888888888888888776522 2444555666677788888888888877542 123
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHcCCCHHHH
Q 003315 482 KPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHG----------------------LEPNFVTHNMIIEGLCMGGRVEEA 539 (831)
Q Consensus 482 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~a 539 (831)
.|+..........+.+.|+.++=..+...|+... .+........++.+-.+.++....
T Consensus 523 ~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 523 EPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHh
Confidence 3444444555666777777766554444443210 111222333334444444443322
Q ss_pred HHHHHHh--------hhCCCCC----hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-Ccc----cHHHHHHHHHhcCCH
Q 003315 540 EAFLDGL--------KGKCLEN----YSAMINGYCKTGHTKEAFQLFMRLSNQGVLV-KKS----SCNKLITNLLILRDN 602 (831)
Q Consensus 540 ~~~~~~~--------~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~~~~ 602 (831)
++-+..- .....+. +..++..+++.+++++|+.+...+....... +.. .-...+.+.+..+++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~ 682 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDP 682 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCH
Confidence 2221111 1111112 3446788899999999999998887764322 222 123445566788999
Q ss_pred HHHHHHHHHHHhC-CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 003315 603 NNALKLFKTMITL-NA--EPS-KSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDV 678 (831)
Q Consensus 603 ~~a~~~~~~~~~~-~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 678 (831)
..|...++.++.. +. .|. ...|+...+...+.|+-.-=.+.+..+......-++..+..........+.+..|+..
T Consensus 683 ~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~ 762 (895)
T KOG2076|consen 683 GDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQE 762 (895)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHH
Confidence 9999999999864 11 121 2345545555555554444444444444332222233444445556678889999998
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-HhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 003315 679 FNDMKQRGITPDVVTYTVLFD-AHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRP-DVISYTVLIAKLCNTQN 756 (831)
Q Consensus 679 ~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 756 (831)
+-+... ..||....+..+. ++....+.. ....++..+..+..++.+..+....- -...+-.++++|-..|-
T Consensus 763 y~ra~~--~~pd~Pl~nl~lglafih~a~qr-----~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl 835 (895)
T KOG2076|consen 763 YMRAFR--QNPDSPLINLCLGLAFIHLALQR-----RVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGL 835 (895)
T ss_pred HHHHHH--hCCCCcHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHccc
Confidence 877765 3566444444332 111111000 00113344566777777766543332 23466668999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-------------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003315 757 LEDGITVFNEISDRGLEPDT-------------VTYTALLCGYLAKGDLDRAIALVDEM 802 (831)
Q Consensus 757 ~~~A~~~~~~~~~~g~~pd~-------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 802 (831)
+.-|..++++.++. .|-. ..-..|.-.|...|+...|.+++++-
T Consensus 836 ~~LA~~YYekvL~~--~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 836 VHLAVSYYEKVLEV--SPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred HHHHHHHHHHHhCC--CccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 99999999999963 3211 12223444699999999999998764
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=2.6e-18 Score=192.49 Aligned_cols=429 Identities=11% Similarity=-0.020 Sum_probs=246.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+...+..+.+.|++++|+..|+++++.. |+...+..+..+|.+.|++++|+..++..++.. +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 45577888888999999999999888764 456677888888888999999999998888764 445668888888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAEC 331 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 331 (831)
..|++++|+..|..+...+-. +......++..+.. ..+........+.. +.+...+..+...+ .....+.+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchh
Confidence 999999998888766554211 11111111111111 12222233333332 22222333222222 1111111111
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHH---HhcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 332 VLLHMEKQGVVPDV-YAYSALISGY---CKFGKINKALLLHHEMTSKG-IKTNCGVLSVILKGLCQKGMASATIKQFLEF 406 (831)
Q Consensus 332 ~~~~~~~~~~~p~~-~~~~~li~~~---~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 406 (831)
-++...+. .++. ..+..+...+ ...+++++|.+.|+..++.+ ..|+
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~--------------------------- 329 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK--------------------------- 329 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh---------------------------
Confidence 11111111 1110 0111111110 12345666666666665543 1111
Q ss_pred HHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcc
Q 003315 407 KDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDII 486 (831)
Q Consensus 407 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 486 (831)
....++.+...+...|++++|+..+++..+... .+...|..+...+...|++++|...|+++.+..+. +..
T Consensus 330 -------~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~ 400 (615)
T TIGR00990 330 -------EAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPD 400 (615)
T ss_pred -------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH
Confidence 233455555556666666666666666655421 12345555556666666666666666666555332 445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHh
Q 003315 487 TYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCK 563 (831)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~ 563 (831)
.+..+...+...|++++|...+++.++.. +.+...+..+..++.+.|++++|+..|++.....|.. ++.++..+..
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 56666666666666666666666666653 3345555556666666677777777666666554443 5666666677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccH------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003315 564 TGHTKEAFQLFMRLSNQGVLVKKSSC------NKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEM 637 (831)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 637 (831)
.|++++|++.|++..+..+..+.... ...+..+...|++++|..+++++...+ +.+...+..++.++...|++
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 77777777777776665443221111 111122233578888888888887764 33445677888888999999
Q ss_pred HHHHHHHHHHHHC
Q 003315 638 EQAQLVFNVLVDK 650 (831)
Q Consensus 638 ~~A~~~~~~~~~~ 650 (831)
++|...|+++.+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888775
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.6e-19 Score=192.44 Aligned_cols=300 Identities=14% Similarity=0.058 Sum_probs=196.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---hhhHHHHHHHHH
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN---EYTYVIVIKALC 251 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 251 (831)
..+..+...|++++|+..|.++++.++. +..++..++..+...|++++|..+++.+.+.+..++ ...+..++..|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4455667889999999999999888643 677788888889999999999999998886432111 245778888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHh
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS----AFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 327 (831)
+.|++++|+.+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 8999999999999988753 45677888888888889999999988888887642221 124556777778888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFK 407 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 407 (831)
+|.+.|+++.+..+. +...+..++..+.+.|++++|.+.++++.+.+......++..++.++...|+.++|...++.+.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888876432 4566777788888888888888888888765332222334444455555555555555555444
Q ss_pred HCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc---cCChhhHHHHHHHHHHcCC
Q 003315 408 DMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCL---QGKLGDALDLFKEMKEMGH 481 (831)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~ 481 (831)
+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++++.+.++
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 432 22233344444455555555555555444432 2344444444443332 2344445555554444333
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.6e-18 Score=197.36 Aligned_cols=410 Identities=10% Similarity=0.001 Sum_probs=209.8
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++....-.+.++...|+.++|++++.......+ ....++..++.++.+.|++++|+..|++
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~-------------------~~a~~~~~lA~~~~~~g~~~~A~~~~~~ 74 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ-------------------LPARGYAAVAVAYRNLKQWQNSLTLWQK 74 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333444445555555555555555544433211 1233445555555555555555555555
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 275 (831)
+++..+. +......++.++...|++++|+..++++++.. +.+.. +..+..++...|+.++|+..++++.+.. +.+.
T Consensus 75 al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~ 150 (765)
T PRK10049 75 ALSLEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQ 150 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 5554322 34444455555555555555555555555432 23334 5555555555555555555555555542 2233
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHH-----hcCCH---hHHHHHHHHHHHC-CC
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS-----AFAYTVVIRWFC-----DQNKL---EKAECVLLHMEKQ-GV 341 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~-~~ 341 (831)
..+..+..++...+..++|+..++.+... |.. ......+++... ..+++ ++|.+.++.+.+. ..
T Consensus 151 ~~~~~la~~l~~~~~~e~Al~~l~~~~~~--p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~ 228 (765)
T PRK10049 151 QYPTEYVQALRNNRLSAPALGAIDDANLT--PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD 228 (765)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc
Confidence 33344445555555555555555443321 000 001111122111 11223 5566666666543 11
Q ss_pred CCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc--
Q 003315 342 VPDVY-AY----SALISGYCKFGKINKALLLHHEMTSKGIK-TNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFL-- 413 (831)
Q Consensus 342 ~p~~~-~~----~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-- 413 (831)
.|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+...+...|++++|+..|+.+.+.....
T Consensus 229 ~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~ 307 (765)
T PRK10049 229 NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIAD 307 (765)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC
Confidence 22211 11 01122334556666676666666655432 221 12223445556666666666666655433211
Q ss_pred -CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---hhhHHHHHHHHHccCChhhHHHHHHHHHH
Q 003315 414 -NKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQI-----------VPD---VVNYTTMICGYCLQGKLGDALDLFKEMKE 478 (831)
Q Consensus 414 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 478 (831)
.......+..++...|++++|..+++.+..... .|+ ...+..+...+...|+.++|+++++++..
T Consensus 308 ~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 308 LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123344455556677777777777777665421 112 12334455566677777777777777766
Q ss_pred cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC
Q 003315 479 MGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN 553 (831)
Q Consensus 479 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 553 (831)
..+. +...+..+...+...|++++|++.++++++.. |.+...+...+..+.+.|++++|+.+++++.+..|++
T Consensus 388 ~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 388 NAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred hCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 5433 45566666667777777777777777777653 3344555555556667777777777777777666665
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=2.6e-18 Score=191.35 Aligned_cols=352 Identities=10% Similarity=-0.015 Sum_probs=278.2
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCc
Q 003315 88 VEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGST 167 (831)
Q Consensus 88 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (831)
+.+-..+.|+++.|+.++..+...... ++.....++..+...|++++|...+.+++...|.
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~------------------ 108 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC------------------ 108 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC------------------
Confidence 344446779999999999988755434 4566667777788899999999999999998665
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
++.++..++..+...|++++|+..|+++++..+. +..++..++.++...|++++|...++.+.... +.+...+..+
T Consensus 109 -~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~- 184 (656)
T PRK15174 109 -QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC- 184 (656)
T ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-
Confidence 5667889999999999999999999999998644 77788899999999999999999999887654 2334444333
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
..+...|++++|+..++.+.+....++...+..+...+...|++++|...++++.+.+ |.+...+..+...+...|+++
T Consensus 185 ~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 185 LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSR 263 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCch
Confidence 3478899999999999998876433445555666788899999999999999999875 667888999999999999998
Q ss_pred H----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 003315 328 K----AECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQF 403 (831)
Q Consensus 328 ~----A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 403 (831)
+ |...|++..+..+. +...+..+...+.+.|++++|+..+++....... +......+...+.+.|++++|+..+
T Consensus 264 eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 264 EAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred hhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6 89999999987544 6778999999999999999999999999986543 4556677788888999999999999
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHc
Q 003315 404 LEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEM 479 (831)
Q Consensus 404 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 479 (831)
+.+....+. +...+..+..++...|+.++|...|++..+.. |+.. ...+++|...+.+..+.
T Consensus 342 ~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~-----------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 342 VQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR--ASHL-----------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhc-----------hhhHHHHHHHHHHHHHh
Confidence 888876433 22344445677888999999999999887652 2211 23445666666666554
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=6.7e-18 Score=188.01 Aligned_cols=332 Identities=13% Similarity=0.057 Sum_probs=218.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
...++..+.+.|++++|..+++.++...+. +..+...++.+....|++++|...|+++.+.. |.+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 346677788889999999999988887655 55666667777778899999999999988764 4566778888888889
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
.|++++|++.++++.+.. +.+...+..++.++...|++++|...++.+.... |.+...+..++ .+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~~-~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATCL-SFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHcCCHHHHHHH
Confidence 999999999999988753 3446677788888888899999988888877664 33444444433 47778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH----HHHHHHHHHH
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASA----TIKQFLEFKD 408 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~ 408 (831)
++.+.+....++...+..+...+.+.|++++|+..+++....+.. +...+..+...+...|+.++ |...++....
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 888877644344455555667778888888888888888775432 34445555556666666553 4555555555
Q ss_pred CCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCc-ch
Q 003315 409 MGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDI-IT 487 (831)
Q Consensus 409 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~ 487 (831)
..+. +...+..+...+.+.|++++|+..+++....... +...+..+...+.+.|++++|...++++.+.+ |+. ..
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~ 354 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKW 354 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHH
Confidence 4322 4455555555555666666666666555543221 33344445555555566666666655555442 222 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 488 YNVLAGAFAQYGAVQKAFDLLNYMKRH 514 (831)
Q Consensus 488 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 514 (831)
+..+..++...|+.++|...++.+.+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 222344455555555555555555543
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=3e-19 Score=190.24 Aligned_cols=303 Identities=16% Similarity=0.130 Sum_probs=177.4
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW 203 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 203 (831)
+..+...|++++|...+.++++..|. +..++..++..+...|++++|+..++++...+..+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 102 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE-------------------TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT 102 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc-------------------cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC
Confidence 33444556666666666665554332 33455566666666666666666666655532111
Q ss_pred C---hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----H
Q 003315 204 S---ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA----F 276 (831)
Q Consensus 204 ~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~ 276 (831)
+ ...+..++..|.+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|++.++++.+.+..+.. .
T Consensus 103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 181 (389)
T PRK11788 103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAH 181 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 1 1344555666666666666666666665532 334556666666666666666666666666654322211 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003315 277 AYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYC 356 (831)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 356 (831)
.+..++..+.+.|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.|+++.+.++.....+++.++.+|.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 23445555666666666666666666543 33455566666666666666666666666665432222345566666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh---cCCHHH
Q 003315 357 KFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCK---LGEVEK 433 (831)
Q Consensus 357 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~ 433 (831)
+.|++++|...++++.+.. |+...+..+...+.+.|++++|...++++.+. .|+...++.++..+.. .|+.++
T Consensus 261 ~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~ 336 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKE 336 (389)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchh
Confidence 6677777766666666543 33344455666666667777777666666554 3566666666666654 457778
Q ss_pred HHHHHHHHHhCCCCCChh
Q 003315 434 AMILFKEMKDRQIVPDVV 451 (831)
Q Consensus 434 A~~~~~~~~~~~~~~~~~ 451 (831)
+..+++++..+++.|++.
T Consensus 337 a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 337 SLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 888888877766555554
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=3.2e-17 Score=182.32 Aligned_cols=445 Identities=10% Similarity=0.055 Sum_probs=279.8
Q ss_pred CChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003315 82 LNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEAL 161 (831)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (831)
+.....-.++..+.|+++.|+..|+++.+..+...+.++ .++.++...|+.++|...+.+.+. +.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~------------ 98 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SM------------ 98 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CC------------
Confidence 456667778889999999999999999876443223445 788888899999999999998772 21
Q ss_pred hcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh
Q 003315 162 CGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY 241 (831)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 241 (831)
+........++..|...|++++|+++|+++++..+. +...+..++..+...++.++|++.++++.+. .|+..
T Consensus 99 -----n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~ 170 (822)
T PRK14574 99 -----NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQ 170 (822)
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchH
Confidence 113345556688999999999999999999999866 6777888889999999999999999999875 36655
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh------HHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFA------YTV 315 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~ 315 (831)
.+..++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-... +.+.... ...
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~ 248 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAE 248 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHH
Confidence 66555444445677767999999999874 446777888889999999999998877653321 1111100 001
Q ss_pred HHHHHH-----hcCCH---hHHHHHHHHHHHC-CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh
Q 003315 316 VIRWFC-----DQNKL---EKAECVLLHMEKQ-GVVPDV-YAY----SALISGYCKFGKINKALLLHHEMTSKGIKTNCG 381 (831)
Q Consensus 316 l~~~~~-----~~g~~---~~A~~~~~~~~~~-~~~p~~-~~~----~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 381 (831)
+++.-. ...++ +.|+.-++.+... +..|.. ..| .-.+-++...|+..++++.|+.+...+.+....
T Consensus 249 ~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 249 QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 111100 11122 3334444444431 111221 111 112344556677777777777777666554555
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----------
Q 003315 382 VLSVILKGLCQKGMASATIKQFLEFKDMGF-----FLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQI---------- 446 (831)
Q Consensus 382 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------- 446 (831)
+...+..+|...+++++|..+|..+..... .++......|.-++...+++++|..+++.+.+...
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 666666777777777777777766654321 12233345566666666666666666666665211
Q ss_pred -CCCh---hhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003315 447 -VPDV---VNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVT 522 (831)
Q Consensus 447 -~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 522 (831)
.|+. ..+..++..+...|+..+|++.++++....+. |......+...+...|.+.+|++.++.+... .+.+..+
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~ 486 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLIL 486 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHH
Confidence 0111 11223344455666666666666666555433 5555666666666666666666666555444 2344455
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC
Q 003315 523 HNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN 553 (831)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 553 (831)
....+..+...+++++|.++.+.+....|+.
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 5555555666666666666666666555554
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.1e-17 Score=190.64 Aligned_cols=406 Identities=12% Similarity=-0.027 Sum_probs=284.0
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 003315 166 STLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI 245 (831)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (831)
.+.++......+.+....|+.++|+.++.++.... +.+...+..+..++.+.|++++|..+|++.++.. |.++..+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 34566677788889999999999999999988744 3456668899999999999999999999998764 456777888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|...++++.+.. |.+...+..++..+...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 8899999999999999999998863 34555 8888899999999999999999999985 6677888888999999999
Q ss_pred HhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhC-CCCCCHh-hHH----H
Q 003315 326 LEKAECVLLHMEKQGVVPDV------YAYSALISGYC-----KFGKI---NKALLLHHEMTSK-GIKTNCG-VLS----V 385 (831)
Q Consensus 326 ~~~A~~~~~~~~~~~~~p~~------~~~~~li~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~~~-~~~----~ 385 (831)
.++|.+.++.+.. .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. .
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999999987664 2331 11222222222 12234 6788888888754 2222221 111 1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC-cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHH
Q 003315 386 ILKGLCQKGMASATIKQFLEFKDMGFF-LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVP---DVVNYTTMICGYC 461 (831)
Q Consensus 386 ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~ 461 (831)
.+..+...++.++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++....... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133445667888888888887776532 222 22224667788888888888888876542111 1233455566677
Q ss_pred ccCChhhHHHHHHHHHHcCCC-----------CCc---chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 462 LQGKLGDALDLFKEMKEMGHK-----------PDI---ITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMII 527 (831)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~~~~-----------~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 527 (831)
..|++++|.++++.+.+..+. |+. ..+..+...+...|+.++|+++++++.... +.+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 888888888888887765321 121 123445556667777777777777776653 45566666677
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003315 528 EGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQG 581 (831)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (831)
..+...|+.++|++.++++...+|+. +..++..+.+.|++++|..+++++.+..
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 77777777777777777777766665 3344455666677777777777776654
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=3.5e-15 Score=156.98 Aligned_cols=606 Identities=14% Similarity=0.099 Sum_probs=390.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 003315 177 IKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSM 256 (831)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (831)
+......|++++|..++..+++.++. +..+|..|..+|-..|+.+++...+-..... .|.|...|..+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccH
Confidence 33344569999999999999999855 7888999999999999999999887665443 356778999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH----HHHHHHhcCCHhHHHHH
Q 003315 257 QEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV----VIRWFCDQNKLEKAECV 332 (831)
Q Consensus 257 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~ 332 (831)
++|.-.|.++++.. +++...+-.-...|-+.|+...|...|.++.....+.+..-... .+..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999875 56777777778889999999999999999999864444333333 35556777888999999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---------------------------CCHhhHH
Q 003315 333 LLHMEKQG-VVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIK---------------------------TNCGVLS 384 (831)
Q Consensus 333 ~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~---------------------------~~~~~~~ 384 (831)
++.....+ -.-+...++.++..|.+..+++.|......+...... ++... .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 98887621 1225566889999999999999999988887662111 11112 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC--CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 003315 385 VILKGLCQKGMASATIKQFLEFKDMG--FFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCL 462 (831)
Q Consensus 385 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 462 (831)
.+.-++......+....+...+.... +.-++..|.-+.++|...|++.+|+++|..+......-+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 22223334444444444444444444 4445778899999999999999999999999887555577889999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHcCC
Q 003315 463 QGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMK--------RHGLEPNFVTHNMIIEGLCMGG 534 (831)
Q Consensus 463 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g 534 (831)
.|..++|.+.++..+...+. +...-..|...+.+.|+.++|.+.+..+. ..+..|+..........+.+.|
T Consensus 462 l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 99999999999999886543 55666778888999999999999999854 2234555666666667788888
Q ss_pred CHHHHHHHHHHhhhCC-------CC-------------------ChHHHHHHHHhcCCHHHHHHHHHH------HHhCCC
Q 003315 535 RVEEAEAFLDGLKGKC-------LE-------------------NYSAMINGYCKTGHTKEAFQLFMR------LSNQGV 582 (831)
Q Consensus 535 ~~~~a~~~~~~~~~~~-------~~-------------------~~~~l~~~~~~~g~~~~A~~~~~~------~~~~~~ 582 (831)
+.++-...-..+.... |. ....++.+-.+.++.....+-... -...+.
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 8877555444433210 00 011122222222221111111100 001111
Q ss_pred CCCc--ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC-
Q 003315 583 LVKK--SSCNKLITNLLILRDNNNALKLFKTMITLNAE--PSK---SMYDKLIGALCQAEEMEQAQLVFNVLVDK-GLT- 653 (831)
Q Consensus 583 ~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~- 653 (831)
..+. ..+..++.++++.++..+|..+...+.....- ++. ..-...+.+.+..+++..|...+..+... +..
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 1111 12445566777778888888777777654322 111 12223445566777788877777777643 111
Q ss_pred -C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHH
Q 003315 654 -P-HLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNE 731 (831)
Q Consensus 654 -p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 731 (831)
| -...||...+.+.+.++-.--.+++..... ..|+......++.++.. ...+.+..|++.+-+
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~-------------~~~~s~~~Al~~y~r 765 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNL-------------FVNASFKHALQEYMR 765 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhH-------------hhccchHHHHHHHHH
Confidence 1 233455555555554443333333333322 12222112222222211 134557778887766
Q ss_pred HHHcCCCCCHHHHHHHH-HHHH----------hcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003315 732 MKEMGIRPDVISYTVLI-AKLC----------NTQNLEDGITVFNEISDRG-LEPDTVTYTALLCGYLAKGDLDRAIALV 799 (831)
Q Consensus 732 m~~~~~~p~~~~~~~l~-~~~~----------~~g~~~~A~~~~~~~~~~g-~~pd~~~~~~l~~~~~~~g~~~~A~~~~ 799 (831)
.... .||....+..+ -++. |+-.+-.++.++.+-.+.. ......+...++++|...|=..-|..++
T Consensus 766 a~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YY 843 (895)
T KOG2076|consen 766 AFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYY 843 (895)
T ss_pred HHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6543 45543333222 2221 1112334555555544421 1224567888999999999999999999
Q ss_pred HHHHh
Q 003315 800 DEMSV 804 (831)
Q Consensus 800 ~~~~~ 804 (831)
++.+.
T Consensus 844 ekvL~ 848 (895)
T KOG2076|consen 844 EKVLE 848 (895)
T ss_pred HHHhC
Confidence 99997
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=6.4e-14 Score=141.66 Aligned_cols=604 Identities=11% Similarity=-0.013 Sum_probs=455.1
Q ss_pred ChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHH
Q 003315 132 WQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYF 211 (831)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (831)
+.+.|..++..+.+.+|. .|..|..-++.--..|++..|..+..+--+.- +.+...|...
T Consensus 266 DikKaR~llKSvretnP~-------------------hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLea 325 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPK-------------------HPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEA 325 (913)
T ss_pred HHHHHHHHHHHHHhcCCC-------------------CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHH
Confidence 455677777777666544 45577777777778888888888776655443 3355555433
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCC
Q 003315 212 MNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA-FAYSTCIEGLCMNGM 290 (831)
Q Consensus 212 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~ 290 (831)
++....+.|..+....++.- |.++..|.--+. -..+...=.+++++.++. .|+. ..|.. -....+
T Consensus 326 ----iRLhp~d~aK~vvA~Avr~~-P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~--iP~sv~LWKa----AVelE~ 391 (913)
T KOG0495|consen 326 ----IRLHPPDVAKTVVANAVRFL-PTSVRLWLKAAD---LESDTKNKKRVLRKALEH--IPRSVRLWKA----AVELEE 391 (913)
T ss_pred ----HhcCChHHHHHHHHHHHHhC-CCChhhhhhHHh---hhhHHHHHHHHHHHHHHh--CCchHHHHHH----HHhccC
Confidence 35566777888888877652 334444433222 233455556788888876 3444 44443 344566
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003315 291 LDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHE 370 (831)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 370 (831)
.+.|.-++.+..+. +|.+...|.+| .+..-|+.|.++++...+. +..+...|.+-...=-.+|+.+....++.+
T Consensus 392 ~~darilL~rAvec-cp~s~dLwlAl----arLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 392 PEDARILLERAVEC-CPQSMDLWLAL----ARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred hHHHHHHHHHHHHh-ccchHHHHHHH----HHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 67799999998887 46666665544 4556789999999999886 445888888877777788999888888765
Q ss_pred H----HhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 371 M----TSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLN--KVCYDVIVDSLCKLGEVEKAMILFKEMKDR 444 (831)
Q Consensus 371 ~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (831)
- ...|+..+...|..=...|-..|..-.+..+.......|+... ..+|..-...|.+.+.++-|..+|....+.
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 4 4578888999998888899999999889899888888877543 468888889999999999999999988875
Q ss_pred CCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003315 445 QIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHN 524 (831)
Q Consensus 445 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 524 (831)
++.+...|...+..--..|..++-..+|+++...-++ ....|.....-+-..|+...|..++..+.+.. +.+...+.
T Consensus 546 -fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwl 622 (913)
T KOG0495|consen 546 -FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWL 622 (913)
T ss_pred -ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHH
Confidence 3346677877777667789999999999999887543 55666667777888999999999999999875 55778888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH
Q 003315 525 MIIEGLCMGGRVEEAEAFLDGLKGKCLEN--YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDN 602 (831)
Q Consensus 525 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 602 (831)
..+.......+++.|..+|.+.....+.. |.--+...--.++.++|++++++..+.-+. -...|..+++.+-..++.
T Consensus 623 aavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHH
Confidence 88999999999999999999988765544 555555555678999999999998887543 455678888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003315 603 NNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDM 682 (831)
Q Consensus 603 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 682 (831)
+.|...|..-.+. ++-....|..|...=-+.|.+-.|+.+++...-+++. +...|-..|+.-.+.|+.+.|..+..+.
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9998888766553 2344567777777778889999999999999988766 8889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003315 683 KQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGIT 762 (831)
Q Consensus 683 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 762 (831)
++. ++.+...|.--|....+.+ .-...... |++ ..-|+...-.+...|....++++|.+
T Consensus 780 LQe-cp~sg~LWaEaI~le~~~~---------------rkTks~DA---Lkk--ce~dphVllaia~lfw~e~k~~kar~ 838 (913)
T KOG0495|consen 780 LQE-CPSSGLLWAEAIWLEPRPQ---------------RKTKSIDA---LKK--CEHDPHVLLAIAKLFWSEKKIEKARE 838 (913)
T ss_pred HHh-CCccchhHHHHHHhccCcc---------------cchHHHHH---HHh--ccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 875 5556667776666554421 11111222 221 34567777778888889999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 763 VFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 763 ~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
.|.+.+.. .|| -.+|.-+...+.++|.-+.-.+++++...
T Consensus 839 Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 839 WFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999974 454 56788888899999998888899988876
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=3.4e-16 Score=174.16 Aligned_cols=439 Identities=13% Similarity=0.014 Sum_probs=280.4
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
.+.+...-+-+..+.|++..|.+.+.++++..|... +.++ .++..+...|+.++|+..+++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~------------------~av~-dll~l~~~~G~~~~A~~~~ek 93 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS------------------GQVD-DWLQIAGWAGRDQEVIDVYER 93 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch------------------hhHH-HHHHHHHHcCCcHHHHHHHHH
Confidence 344444555678899999999999999988855421 1223 778888889999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 275 (831)
..... .........++..+...|++++|+++|+++.+.. |.++..+..++..+...++.++|++.++++... .|+.
T Consensus 94 a~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~ 169 (822)
T PRK14574 94 YQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTV 169 (822)
T ss_pred hccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--Ccch
Confidence 88322 2233334444668888999999999999999875 456777888888899999999999999999876 5776
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH------H
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAY------S 349 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~------~ 349 (831)
..+..++..+...++..+|++.++++.+.+ |.+...+..+...+.+.|-...|.++..+-... +.+....+ .
T Consensus 170 ~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a 247 (822)
T PRK14574 170 QNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAA 247 (822)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHH
Confidence 666556566656777767999999999986 778888899999999999988888776653321 11111111 0
Q ss_pred HHHHHH---H--hcCC---hHHHHHHHHHHHhC-CCCCCHh-----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH
Q 003315 350 ALISGY---C--KFGK---INKALLLHHEMTSK-GIKTNCG-----VLSVILKGLCQKGMASATIKQFLEFKDMGFFLNK 415 (831)
Q Consensus 350 ~li~~~---~--~~~~---~~~A~~~~~~~~~~-~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 415 (831)
.++..- . ..++ .+.|+.-++.+... +..|... ...-.+-++...++..++++.|+.+...+.+...
T Consensus 248 ~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 248 EQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred HHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 111100 0 1112 34455555655542 2223211 1223445566777777777777777777765555
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCC---------
Q 003315 416 VCYDVIVDSLCKLGEVEKAMILFKEMKDRQ-----IVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGH--------- 481 (831)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------- 481 (831)
.+-..+.++|...++.++|+.+|+.+.... ..++......|..+|..++++++|..+++++.+..+
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 566777777777777777777777765432 122333345677777777777777777777766322
Q ss_pred ----CCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---
Q 003315 482 ----KPDII-TYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN--- 553 (831)
Q Consensus 482 ----~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--- 553 (831)
.||-. .+..++..+...|+..+|++.++++.... |-|..........+...|...+|+..++.....+|..
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~ 486 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLIL 486 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence 01111 12223444555566666666666665543 4455555555555566666666666665555555544
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 554 YSAMINGYCKTGHTKEAFQLFMRLSNQ 580 (831)
Q Consensus 554 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (831)
....+..+...+++.+|..+.+++.+.
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 223344444555555555555555444
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=1.3e-13 Score=139.37 Aligned_cols=609 Identities=10% Similarity=-0.019 Sum_probs=458.4
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHH
Q 003315 96 KEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDA 175 (831)
Q Consensus 96 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (831)
++..+|.-++..+.+.++. +|..|-.-++.=-..|++..|..+..+-.+..+. +..+|..
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cpr-------------------SeDvWLe 324 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPR-------------------SEDVWLE 324 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCc-------------------hHHHHHH
Confidence 4778899999988877644 6677877777777788888888877765555333 4444544
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003315 176 MIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS 255 (831)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (831)
. ++..-.+.|..+..++.+..+. ++..|......- .+...=.+++...+++ +|.++..|-. ......
T Consensus 325 a----iRLhp~d~aK~vvA~Avr~~P~-Sv~lW~kA~dLE---~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~ 391 (913)
T KOG0495|consen 325 A----IRLHPPDVAKTVVANAVRFLPT-SVRLWLKAADLE---SDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEE 391 (913)
T ss_pred H----HhcCChHHHHHHHHHHHHhCCC-ChhhhhhHHhhh---hHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccC
Confidence 4 3466778888888888877533 555554333322 2223334667776665 3445555543 445667
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 003315 256 MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLH 335 (831)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 335 (831)
.+.|.-++.++.+. ++..... .-+|.+..-|+.|..+++++.+. +|.++.+|..-...--.+|+.+...+++.+
T Consensus 392 ~~darilL~rAvec-cp~s~dL----wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 392 PEDARILLERAVEC-CPQSMDL----WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred hHHHHHHHHHHHHh-ccchHHH----HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77799999998875 2333333 34566677789999999998886 688899999888888899999998888766
Q ss_pred H----HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 336 M----EKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTN--CGVLSVILKGLCQKGMASATIKQFLEFKDM 409 (831)
Q Consensus 336 ~----~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 409 (831)
- ...|+..+...|..=...+-..|-.--+..+....+..|+.-. ..|+..-...|.+.+.++-+..+|...++.
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 4 4468888888998888888888999999999999888876543 357888888999999999999999988875
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHH
Q 003315 410 GFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYN 489 (831)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 489 (831)
-+ .+...|......--..|..++-..+|++.... .+.....|-.....+-..|+...|..++.+..+.++. +...|.
T Consensus 546 fp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwl 622 (913)
T KOG0495|consen 546 FP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWL 622 (913)
T ss_pred cc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHH
Confidence 33 35677777777777789999999999998865 3345566666677778889999999999999888655 778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCC
Q 003315 490 VLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGH 566 (831)
Q Consensus 490 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~ 566 (831)
.-+.....+.+++.|..+|.+.... .++..+|.--+....-.+..++|.+++++..+.-|.- |-.++..+-+.++
T Consensus 623 aavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH
Confidence 8888999999999999999998864 5677777666666667899999999999998887765 7888888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 567 TKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNV 646 (831)
Q Consensus 567 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 646 (831)
.+.|.+.|..=.+.-+. .+..|..+...-.+.|.+-.|..++++....+ +-+...|...+.+-.+.|..++|..+..+
T Consensus 701 ie~aR~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 701 IEMAREAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99998888654444322 45567777777778899999999999998876 56778899999999999999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHH
Q 003315 647 LVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDAS 726 (831)
Q Consensus 647 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 726 (831)
+++. ++.+-..|..-|....+.++--++.+.+++.. -|......+-..+- ....+++|.
T Consensus 779 ALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce-----~dphVllaia~lfw---------------~e~k~~kar 837 (913)
T KOG0495|consen 779 ALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-----HDPHVLLAIAKLFW---------------SEKKIEKAR 837 (913)
T ss_pred HHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc-----CCchhHHHHHHHHH---------------HHHHHHHHH
Confidence 9876 34466778888888777777666666666653 23333333322222 135689999
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003315 727 VFWNEMKEMGIRPDV-ISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPD 775 (831)
Q Consensus 727 ~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 775 (831)
+.|.+..+.+ ||. .+|..+...+.+.|.-++-.+++.+... .+|.
T Consensus 838 ~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~ 883 (913)
T KOG0495|consen 838 EWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPT 883 (913)
T ss_pred HHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCC
Confidence 9999988643 544 6898888989999998888899888876 4554
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1e-15 Score=147.57 Aligned_cols=476 Identities=12% Similarity=0.068 Sum_probs=289.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhhHHHHHH
Q 003315 244 VIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAY-STCIEGLCMNGMLDLGYELLLKWEEADIPLS----AFAYTVVIR 318 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~ 318 (831)
..|...|.......+|+..|+-+.+..+-|+.-.. ..+...+.+..++.+|+++|+-.+..-...+ ....+.+..
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 34455566667777888888877776655665332 2344667777888888888877776521112 234455556
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH--------HHHHHHH
Q 003315 319 WFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVL--------SVILKGL 390 (831)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~~ll~~~ 390 (831)
.|++.|.++.|..-|+...+. .|+..+-..|+-++..-|+-++..+.|++|+.....+|..-| ..++.-.
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 677889999999999888876 577766666666677788888888888888765433332211 1111111
Q ss_pred HhcCC--------hHHHHHHHHH---HHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 003315 391 CQKGM--------ASATIKQFLE---FKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICG 459 (831)
Q Consensus 391 ~~~~~--------~~~a~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 459 (831)
.+... -..|.+.... +..--+.|+- ..| .+-+++.++.-.-.....+. -..-...
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f-----------a~g-~dwcle~lk~s~~~~la~dl--ei~ka~~ 428 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF-----------AAG-CDWCLESLKASQHAELAIDL--EINKAGE 428 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch-----------hcc-cHHHHHHHHHhhhhhhhhhh--hhhHHHH
Confidence 11110 0111111111 1110111110 000 11122222211100000000 0111234
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 003315 460 YCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGA--FAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVE 537 (831)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 537 (831)
|.++|+++.|.++++-+....-+.-...-+.+-.. +.--.++..|.++-+..+... .-+......-.......|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 77889999999988877654322222222222222 222336677777766665432 223322222223334578899
Q ss_pred HHHHHHHHhhhCCCCChH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 538 EAEAFLDGLKGKCLENYS---AMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMIT 614 (831)
Q Consensus 538 ~a~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (831)
+|...+++....+...-. .++-.+-..|+.++|+++|-++...=. .+...+..+...|..+.++.+|++++.++..
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 999999988877665433 344556778999999999887654322 2667788888888888999999999887776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003315 615 LNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTY 694 (831)
Q Consensus 615 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 694 (831)
. ++.|+.+.+.|.+.|-+.|+-.+|.+.+-.-.+. ++.++.+..-|...|....-+++|+.+|++..- +.|+...|
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kw 662 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKW 662 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHH
Confidence 4 3667888999999999999999998887665554 445788888888888888888999999988754 67888888
Q ss_pred HHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003315 695 TVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEP 774 (831)
Q Consensus 695 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 774 (831)
..++..|.+ +.|++.+|+++++...++ ++.
T Consensus 663 qlmiasc~r-------------------------------------------------rsgnyqka~d~yk~~hrk-fpe 692 (840)
T KOG2003|consen 663 QLMIASCFR-------------------------------------------------RSGNYQKAFDLYKDIHRK-FPE 692 (840)
T ss_pred HHHHHHHHH-------------------------------------------------hcccHHHHHHHHHHHHHh-Ccc
Confidence 888777744 556666666666666554 555
Q ss_pred CHHHHHHHHHHHHhcCC
Q 003315 775 DTVTYTALLCGYLAKGD 791 (831)
Q Consensus 775 d~~~~~~l~~~~~~~g~ 791 (831)
|.....-|++.+...|-
T Consensus 693 dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 693 DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred chHHHHHHHHHhccccc
Confidence 66666666666666554
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=4.3e-15 Score=143.30 Aligned_cols=493 Identities=14% Similarity=0.082 Sum_probs=319.4
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhH-HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh----h
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSC-NYFMNQLVECGKVDMALAVYQHLKRLGLSLNE----Y 241 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~ 241 (831)
..+-.+...|++-|....++.+|+..|+-+.+....|+.... ..+.+.+.+.+++.+|++.|.-.+..-...+. .
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 344557788999999999999999999988887666665543 34667888999999999999877654211122 2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH--------
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAY-------- 313 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------- 313 (831)
..+.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+++..-..+|..-|
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 3444445577899999999999988776 688887777777788889999999999999875333332211
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQK 393 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 393 (831)
..|+.--.+.. .++.|.+.+ ..+-++++-.-.+++.--+.|+-.. =...|
T Consensus 356 ~~ll~eai~nd-------~lk~~ek~~-----------------ka~aek~i~ta~kiiapvi~~~fa~---g~dwc--- 405 (840)
T KOG2003|consen 356 DNLLNEAIKND-------HLKNMEKEN-----------------KADAEKAIITAAKIIAPVIAPDFAA---GCDWC--- 405 (840)
T ss_pred hHHHHHHHhhH-------HHHHHHHhh-----------------hhhHHHHHHHHHHHhccccccchhc---ccHHH---
Confidence 11111111111 111121110 0112222222222222222222110 00000
Q ss_pred CChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc--cCChhhHHH
Q 003315 394 GMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCL--QGKLGDALD 471 (831)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~ 471 (831)
++.+..-.......+.. . .-...+.+.|+++.|+++++-..++........-+.|-..+.- ..++.+|.+
T Consensus 406 ------le~lk~s~~~~la~dle-i-~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 406 ------LESLKASQHAELAIDLE-I-NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred ------HHHHHHhhhhhhhhhhh-h-hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 00000000000000000 0 1123456889999999999887766333222223333222222 346777777
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC--
Q 003315 472 LFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGK-- 549 (831)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 549 (831)
.-+...... .-+......-......+|++++|.+.+++.+...-.-....|+. .-.+...|++++|.+.|-++...
T Consensus 478 yad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 478 YADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred HHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHH
Confidence 777665432 11222222223334467899999999999986543333333443 33577889999999998876543
Q ss_pred -CCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 550 -CLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLI 628 (831)
Q Consensus 550 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 628 (831)
+.+..-.+...|-...+..+|++++.+....-+ .|+.++..+...|-+.|+..+|.+.+-...+. ++.+..+...|.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip-~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ 633 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLA 633 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC-CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHH
Confidence 444466677888888999999999988766533 48889999999999999999999987666554 467888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccc
Q 003315 629 GALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGY-CKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINL 706 (831)
Q Consensus 629 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 706 (831)
..|....-+++|..+|++..- ++|+..-|..|+..| .+.|++++|+++|++..++ ++-|......|++.|..+|+
T Consensus 634 ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999999999999999998876 489999999887655 5889999999999999875 66677778888888877665
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=4.5e-13 Score=128.88 Aligned_cols=421 Identities=12% Similarity=0.100 Sum_probs=282.5
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh--cCCCchhHH--HHHHHHhc
Q 003315 88 VEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRK--KTDANFEAT--DLIEALCG 163 (831)
Q Consensus 88 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~--~~~~~~~~ 163 (831)
+..+.++ |....+--+|+.+.+.|..-++.+-..+.+..+..+.-+--..-.+..+.. .++.+-..+ ..+..+..
T Consensus 122 L~kmIS~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~ 200 (625)
T KOG4422|consen 122 LLKMISS-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLF 200 (625)
T ss_pred HHHHHhh-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHH
Confidence 3344454 578888889999998888778888878877766544332221111111211 111111110 11222444
Q ss_pred CCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhH
Q 003315 164 EGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTY 243 (831)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 243 (831)
+..+-++.++..++...++--..+.|.++|........+.+..++|.++.+-.-... .++..+|......||..|+
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhH
Confidence 556778889999999999999999999999998887778889999999877654433 6788889988889999999
Q ss_pred HHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHC----C----CCCCh
Q 003315 244 VIVIKALCKKGSMQE----AVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDL-GYELLLKWEEA----D----IPLSA 310 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~----~~~~~ 310 (831)
|+++....+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... . .|.+.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998765 56778899999999999999999999999888755 44455554432 1 23456
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 003315 311 FAYTVVIRWFCDQNKLEKAECVLLHMEKQG----VVPD---VYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVL 383 (831)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 383 (831)
..|..-+..|.+..+.+-|.++..-+.... +.|+ ...|..+....|+....+....+|+.|+-+-.-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 677788888889999999998887765431 2222 234667888899999999999999999988888999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC-CH--------H-----HHHHHHH-------HHH
Q 003315 384 SVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLG-EV--------E-----KAMILFK-------EMK 442 (831)
Q Consensus 384 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~A~~~~~-------~~~ 442 (831)
..++++....+.++-.-+++.+++..|...+.....-++..+++.. +. . -|..+++ ++.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999888775555544444444444433 10 0 0111111 111
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCC-CCCcchHH---HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003315 443 DRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGH-KPDIITYN---VLAGAFAQYGAVQKAFDLLNYMKRHG 515 (831)
Q Consensus 443 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~ 515 (831)
+. .......+..+-.+.+.|..++|.++|..+...+- -|-....+ -+++.-.+.++...|..+++.|...+
T Consensus 517 ~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 517 AQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 11 12233344444445566666666666665543321 12222233 33334444555556666666555444
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.9e-13 Score=131.42 Aligned_cols=340 Identities=16% Similarity=0.192 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHH--cCChhHH-HHHHHHHHhcCCCCChhhHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVE--CGKVDMA-LAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
.-+.|++ ....|.+.++.-+|++|...|.+-+...-..+++...- ..+..-| ++.|-.|.+.| ..+..+|
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW----- 190 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-----
Confidence 3345555 36688999999999999999877777666666554332 2222211 12233333322 1111222
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
+.|...+ ++-+.. +.+..++..+|.++|+--..+.|.+++++..+...+.+..+||.+|.+-.-. .
T Consensus 191 ---K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~ 256 (625)
T KOG4422|consen 191 ---KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----V 256 (625)
T ss_pred ---ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----c
Confidence 2222211 111111 2233444455555554444455555554444443344444444444332211 1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH-HHHHH
Q 003315 329 AECVLLHMEKQGVVPDVYAYSALISGYCKFGKINK----ALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASA-TIKQF 403 (831)
Q Consensus 329 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~ 403 (831)
-.+++.+|..+.+.||..|+|++++...+.|+++. |.+++.+|++.|+.|...+|..++...++.++..+ +..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 14444555554455555555555555555554432 23444444455555555555555554444444322 22222
Q ss_pred HHHHH----CCCC----cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHccCChhh
Q 003315 404 LEFKD----MGFF----LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQ----IVPD---VVNYTTMICGYCLQGKLGD 468 (831)
Q Consensus 404 ~~~~~----~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~ 468 (831)
.++.. ..+. .+...|...+..|.+..+.+-|.++..-..... +.|+ ..-|..+....|+....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1111 123344455555556666666655554443221 1111 1234445555666666777
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003315 469 ALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCM 532 (831)
Q Consensus 469 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 532 (831)
-+..++.|.-.-.-|+..+...++++....|.++-.-++|.+++..|..........++..+++
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 7777777766555566666677777777777777777777777766655444444444444443
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.1e-12 Score=127.93 Aligned_cols=431 Identities=11% Similarity=0.033 Sum_probs=272.8
Q ss_pred HHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcch
Q 003315 90 KLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLL 169 (831)
Q Consensus 90 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (831)
..-..+++.+.|.++|+.+...+. .+...|..-+..=+++...+.|..++...+...|. .
T Consensus 81 qwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-------------------V 140 (677)
T KOG1915|consen 81 QWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-------------------V 140 (677)
T ss_pred HHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-------------------H
Confidence 333456677888888888876553 37778888888888888888888888887776443 3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
...|...+..--..|+...|.++|++-.+- .|+..++++.++.-.+-+..+.|..+|++.+-. .|++.+|....+.
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarF 216 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARF 216 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHH
Confidence 345666666666778888888888887764 677888888888888888888888888888763 4888888888888
Q ss_pred HHhcCChHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCC
Q 003315 250 LCKKGSMQEAVEVFLEMEKA-GV-TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS--AFAYTVVIRWFCDQNK 325 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 325 (831)
-.++|....|..+|+.+.+. |- ..+...+.+...--.++..++.|.-+|.-.++. +|.+ ...|..+...--+.|+
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcc
Confidence 88888888888888887764 21 112233444444444667777888888777765 3333 4455555544444555
Q ss_pred HhHHHH--------HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-------hHHHHHHHH
Q 003315 326 LEKAEC--------VLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCG-------VLSVILKGL 390 (831)
Q Consensus 326 ~~~A~~--------~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ll~~~ 390 (831)
-...++ .++.+.+.++. |-.+|--.+..--..|+.+...++|+..+.+ ++|-.. +|.-+--++
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHH
Confidence 433332 24455555443 6667777777777778888888888887765 333211 111111111
Q ss_pred ---HhcCChHHHHHHHHHHHHCCCCcCHhhHHHH----HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 003315 391 ---CQKGMASATIKQFLEFKDMGFFLNKVCYDVI----VDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQ 463 (831)
Q Consensus 391 ---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 463 (831)
....+.+.+.++|+..++. ++....|+..+ .....+..++..|.+++.... |..|...+|...|..=.+.
T Consensus 374 yeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQL 450 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHH
Confidence 1345666666666666652 22233343333 233335566666766666554 3355666666666666666
Q ss_pred CChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 003315 464 GKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHG-LEPNFVTHNMIIEGLCMGGRVEEAEAF 542 (831)
Q Consensus 464 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 542 (831)
+++|.+..++++.++.++. +..+|......-...|+.+.|..+|.-+++.. .......+...|..-...|.++.|..+
T Consensus 451 ~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred hhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 7777777777777766544 55666666666666677777777777666532 122234455555555566677777777
Q ss_pred HHHhhhCCC
Q 003315 543 LDGLKGKCL 551 (831)
Q Consensus 543 ~~~~~~~~~ 551 (831)
++.+.....
T Consensus 530 YerlL~rt~ 538 (677)
T KOG1915|consen 530 YERLLDRTQ 538 (677)
T ss_pred HHHHHHhcc
Confidence 666665543
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.7e-12 Score=125.27 Aligned_cols=476 Identities=11% Similarity=0.032 Sum_probs=302.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh-hhHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNE-YTYVIVI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~ 247 (831)
+...|..-++.-..++++..|..+|++++.-+.. ++..+...+..-.+++.+..|..++++.+.. -|-+ ..|.-.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 4556777777778899999999999999988744 8888999999999999999999999999875 2443 3455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
..--..|+...|.++|++-.+. .|+..+|.+.|..-.+-+.++.|..+|++.+-. .|++..|...++.--+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 5555689999999999999876 899999999999999999999999999999876 489999999999999999999
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHH
Q 003315 328 KAECVLLHMEKQGVV--PDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTN-CGVLSVILKGLCQKGMASATIKQFL 404 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~ 404 (831)
.|..+|+...+.--. -+...+.++...=..+..++.|..+|+-.++.=++.. ...+..+...--+-|+........-
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999998874111 1223344444444567778888888888876522211 1122222221112222211111100
Q ss_pred HHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCC
Q 003315 405 EFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPD 484 (831)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 484 (831)
.+-.--++.+...+ +.|-.+|--.+..--..|+.+...+++++.+..-++..
T Consensus 305 ---------------------------~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ 356 (677)
T KOG1915|consen 305 ---------------------------GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS 356 (677)
T ss_pred ---------------------------hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh
Confidence 00000122222221 22444455555555555666666666666554322111
Q ss_pred c-chHHHHH----H-HH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HcCCCHHHHHHHHHHhhhCCC
Q 003315 485 I-ITYNVLA----G-AF---AQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGL----CMGGRVEEAEAFLDGLKGKCL 551 (831)
Q Consensus 485 ~-~~~~~l~----~-~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~ 551 (831)
. ..|...| + +| ....+.+.+.++++..++. +|....|+.-+--+| .++.++..|.+++...+..+|
T Consensus 357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP 435 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP 435 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC
Confidence 1 0111111 0 11 2345566666666666653 333444444333333 245566666666666666666
Q ss_pred CC--hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH
Q 003315 552 EN--YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLN-AEPSKSMYDKLI 628 (831)
Q Consensus 552 ~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~ 628 (831)
.. +...|..-.+.++++.+..++++.++-++. +-.++...+..-..+|+.+.|..+|+-++... .......|...|
T Consensus 436 K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 436 KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 54 445555555666666666666666666554 55666666666667777777777777776532 122344566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHH
Q 003315 629 GALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYC-----KIN-----------CLREARDVFNDMK 683 (831)
Q Consensus 629 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 683 (831)
+-=...|.++.|+.+++.+++. .+...+|-++...-. +.+ +...|..+|++..
T Consensus 515 dFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 7677889999999999998876 445556666554433 333 4566777776654
No 37
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.67 E-value=3.1e-10 Score=115.35 Aligned_cols=314 Identities=12% Similarity=0.128 Sum_probs=195.9
Q ss_pred cCChhhHHHHHHHHHHcCCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcC
Q 003315 463 QGKLGDALDLFKEMKEMGHKPD------IITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPN---FVTHNMIIEGLCMG 533 (831)
Q Consensus 463 ~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 533 (831)
.|+..+-...+.++... +.|. ...|..+...|-..|+.+.|..+|++..+...+.- ..+|.....+-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45555556666655442 1121 12355556666666677777777766665433222 23444444444555
Q ss_pred CCHHHHHHHHHHhhhCC---------------------CCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 003315 534 GRVEEAEAFLDGLKGKC---------------------LENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKL 592 (831)
Q Consensus 534 g~~~~a~~~~~~~~~~~---------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (831)
.+++.|.++++...... +..|...++.--..|-++....+++++.+..+. ++......
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 66666666665543221 111444555555667888888999999888765 66666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhH--HHHHHHHH
Q 003315 593 ITNLLILRDNNNALKLFKTMITLNAEPSK-SMYDKLIGALCQ---AEEMEQAQLVFNVLVDKGLTPHLVT--YTMMIHGY 666 (831)
Q Consensus 593 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~ 666 (831)
...+-...-++++.+.+++-+..-..|+. .+|+..+..+.+ .-+++.|+.+|+++++ |++|...- |-.....-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 66667778889999999988776545654 467777666654 3578999999999999 56654322 22222222
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHH
Q 003315 667 CKINCLREARDVFNDMKQRGITPD--VVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISY 744 (831)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 744 (831)
-+.|....|+++|++.... +++. ...|++.|.--.. .-++.....+|++.++. -||...-
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae---------------~yGv~~TR~iYekaIe~--Lp~~~~r 658 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAE---------------IYGVPRTREIYEKAIES--LPDSKAR 658 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH---------------HhCCcccHHHHHHHHHh--CChHHHH
Confidence 3668999999999998754 5553 3457777754332 12244456667766654 4554322
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 003315 745 ---TVLIAKLCNTQNLEDGITVFNEISDRGLEP--DTVTYTALLCGYLAKGDLDRAIAL 798 (831)
Q Consensus 745 ---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--d~~~~~~l~~~~~~~g~~~~A~~~ 798 (831)
--..+.=++.|.+++|..++.-.-+. +.| +...|.+.=.-=.++|+-+-..+.
T Consensus 659 ~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 659 EMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 33445567899999999999887654 555 466688887778899994443333
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=5.1e-13 Score=130.90 Aligned_cols=220 Identities=16% Similarity=0.088 Sum_probs=172.6
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003315 460 YCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEA 539 (831)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 539 (831)
+.-.|+...|..-|+..+.....++ ..|-.+..+|...++.++....|++..+.+ +-++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 3456888889999998888754422 237777778888899999999999988875 55666777777777778899999
Q ss_pred HHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003315 540 EAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLN 616 (831)
Q Consensus 540 ~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 616 (831)
..-|++....+|++ |-.+..+..+.++++++...|++....-+. .++.++...+.+...+++++|.+.|+.++...
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 99999999998887 444555566788999999999998887554 78889999999999999999999999988763
Q ss_pred CC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 617 AE-------PSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 617 ~~-------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
.. +.+.+-..++-.-++ ++++.|..++.++.+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 122222333333355 8999999999999997655 567899999999999999999999998764
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-11 Score=124.17 Aligned_cols=505 Identities=12% Similarity=0.009 Sum_probs=331.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
+..-+..+.+-+..+.++..|.-+-+++...+ .|+...-.+++++.-.++++.|..+...-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 33445566666777888999999988887765 34555667888888888888888777654321 357778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKA--GVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
.+.+..++++|..++...... .+.-+..+- +.-... +.+.+.. ........+..-...|....+.
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~---~~~l~~----n~~~~~~------~~~~essic~lRgk~y~al~n~ 157 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDA---ANTLEL----NSAGEDL------MINLESSICYLRGKVYVALDNR 157 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhh---hceecc----Ccccccc------cccchhceeeeeeehhhhhccH
Confidence 888999999999888733110 111111110 000001 1111000 0011111222233455566677
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCHhhHHHHHHHHHhcCChHHHHHH
Q 003315 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGI----KTNCGVLSVILKGLCQKGMASATIKQ 402 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~ 402 (831)
++|...|.+.... |...+.++...-.. ..-.+.+.++.+...+. +-+......+.........-+.....
T Consensus 158 ~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r 231 (611)
T KOG1173|consen 158 EEARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTR 231 (611)
T ss_pred HHHHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccccc
Confidence 7777777777654 44444443222111 01111111222211110 01111222222111000000000000
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCC
Q 003315 403 FLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHK 482 (831)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 482 (831)
-.+..-.+..-+........+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.-+.
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~ 310 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS 310 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC
Confidence 0101112233355556666777788899999999999988763 345556666777888889888888777888776543
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC---CChHHHHH
Q 003315 483 PDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL---ENYSAMIN 559 (831)
Q Consensus 483 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~ 559 (831)
...+|-++.--|...|+..+|.+.|.+..... +.-...+-.+...|.-.|+.|.|...+....+.-+ .++-.++.
T Consensus 311 -~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 311 -KALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM 388 (611)
T ss_pred -CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 77889999888888899999999999987643 22344677788889999999999998887765533 34666778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-C-CCHHHHHHHHHHHHh
Q 003315 560 GYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLN----A-E-PSKSMYDKLIGALCQ 633 (831)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~-p~~~~~~~l~~~~~~ 633 (831)
-|.+.++.+-|.+.|.++....+. |+..+..++-.....+.+.+|..+|+..+..- . . .-..+++.|+.+|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 888999999999999999888765 88888888888888999999999998887211 0 1 134568889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003315 634 AEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSK 703 (831)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 703 (831)
.+++++|...+++.+....+ |..++.++.-.|...|+++.|++.|.+.+- ++||..+...++..+..
T Consensus 468 l~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99999999999999987555 899999999999999999999999999885 78998887777765543
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=1.7e-12 Score=137.26 Aligned_cols=289 Identities=13% Similarity=-0.001 Sum_probs=163.9
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 003315 322 DQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIK 401 (831)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 401 (831)
..|+++.|++.+.+..+.... ....+-....++.+.|+++.|.+.+.+..+....+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~----------------------- 151 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND----------------------- 151 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC-----------------------
Confidence 456666666666665554222 12233334455556666666666666655432111
Q ss_pred HHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 003315 402 QFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGH 481 (831)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 481 (831)
...........+...|+++.|...++.+.+.... +...+..+...+...|++++|.+.+..+.+.++
T Consensus 152 ------------~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 152 ------------NILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred ------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 1112222345555566666666666666655322 444555666666666666666666666666543
Q ss_pred CCCcchHH-HHHHHH---HhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCh
Q 003315 482 KPDIITYN-VLAGAF---AQYGAVQKAFDLLNYMKRHGL---EPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENY 554 (831)
Q Consensus 482 ~~~~~~~~-~l~~~~---~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 554 (831)
. +...+. ....++ ...+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+.+++..+..|++.
T Consensus 219 ~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 219 F-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 3 222221 111111 222222223334444433221 13566666677777777777777777777777666653
Q ss_pred H---HHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 555 S---AMIN--GYCKTGHTKEAFQLFMRLSNQGVLVKK--SSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKL 627 (831)
Q Consensus 555 ~---~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 627 (831)
. .++. .....++.+.+.+.+++..+..+. |+ .....+++.+.+.|++++|.+.|+.+......|+..++.++
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 2 1222 223346667777777777766544 44 56667777777888888888877754444446777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003315 628 IGALCQAEEMEQAQLVFNVLVD 649 (831)
Q Consensus 628 ~~~~~~~g~~~~A~~~~~~~~~ 649 (831)
...+.+.|+.++|.++|++...
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888777776543
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.7e-11 Score=118.73 Aligned_cols=509 Identities=11% Similarity=0.027 Sum_probs=258.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 003315 239 NEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIR 318 (831)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (831)
+..-+..+.+-+..+.++..|.-+-++....+..| ...--+.+++.-.|++..|..+...-.-. ..+..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp--~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDP--ADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCh--HHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 45566677777777788888888888877654344 44445678888888888887777665332 346677777788
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH
Q 003315 319 WFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASA 398 (831)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 398 (831)
++.+..++++|..++..... ..+...|..-=. ...-..+.+. ++. ++.........-.+.|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHH
Confidence 88888888888888763311 111111110000 0000000111 000 011111111112223444445555
Q ss_pred HHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHH-HccCChhhHHHHH
Q 003315 399 TIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIV----PDVVNYTTMICGY-CLQGKLGDALDLF 473 (831)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~ 473 (831)
|...|.+.... |...+..+...-.. .+-.+.+.++.+...... -+......+.... ++..+ ++....-
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~ 232 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRN 232 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccC
Confidence 55555555443 22222222211110 111111112222111000 0111111111100 00000 0000000
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC
Q 003315 474 KEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN 553 (831)
Q Consensus 474 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 553 (831)
.+..-.+..-+........+-+...+++.+..++.+...+.. +++...+..-|.++...|+..+-..+=.++.+..|..
T Consensus 233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~ 311 (611)
T KOG1173|consen 233 EDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSK 311 (611)
T ss_pred chhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCC
Confidence 000011122244444445555556666666666666666543 4444455555555666666555555545555554443
Q ss_pred ---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003315 554 ---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGA 630 (831)
Q Consensus 554 ---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 630 (831)
|-+++--|.-.|++++|..+|.+....++. -...|...+..+.-.+.-++|...+..+.+.- +-...-+.-++--
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgme 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGME 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHH
Confidence 555555555556666666666665554433 22344444555555555555555554444321 1011111112223
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCC
Q 003315 631 LCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSS 710 (831)
Q Consensus 631 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 710 (831)
|.+.+..+.|.++|.++....+. |+...+-+.-...+.+.+.+|...|+..++. .
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~--i---------------------- 444 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEV--I---------------------- 444 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHH--h----------------------
Confidence 44455555555555555543222 4445555554444555555555555544411 0
Q ss_pred CCCchhhcccCHHHHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003315 711 SSPDALQCKEDVVDASVFWNEMKEMG-IR-PDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLA 788 (831)
Q Consensus 711 ~~~~~~~~~~~~~~a~~~~~~m~~~~-~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 788 (831)
++.+ -+ --..+++.|+.++.+.+++++|+..+++.+.. .+.|+.++.+++-.|..
T Consensus 445 ----------------------k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~l 501 (611)
T KOG1173|consen 445 ----------------------KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHL 501 (611)
T ss_pred ----------------------hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHH
Confidence 0000 01 12346788999999999999999999999986 55688999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 789 KGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIE 822 (831)
Q Consensus 789 ~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~ 822 (831)
.|+++.|.+.|.+.+. +.||+.+...++.-..
T Consensus 502 lgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 502 LGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred hcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999999999999887 8999977776665433
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.60 E-value=2.2e-11 Score=127.98 Aligned_cols=269 Identities=14% Similarity=0.156 Sum_probs=148.4
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 275 (831)
+...|+.|+-.+|..++..|+..|+.+.|- +|.-|.-...+.+...++.++.+..+.++.+.+. .|-.
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 344455555555555555555555555555 5555544444444555555555555555544443 3455
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEK-QGVVPDVYAYSALISG 354 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~ 354 (831)
.+|..|..+|...||... ++..++ -...+...+...|--..-..++..+.- .+.-||..+ .+..
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ill 148 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILL 148 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHH
Confidence 555555555555555443 111111 011122223333333333333322111 112233222 2333
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHH
Q 003315 355 YCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKG-MASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEK 433 (831)
Q Consensus 355 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 433 (831)
..-.|-|+.+++++..+....... +...+++-+.... .+++...+...... .++..+|..+++.-...|+++.
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhh
Confidence 334455666666655443221110 1111233333222 22222222222222 5788889999999889999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 003315 434 AMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGA 500 (831)
Q Consensus 434 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 500 (831)
|..++.+|++.|++.+.+-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 223 Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999999998888888888765 77888888888899999999999998888877777555
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=4.5e-13 Score=137.09 Aligned_cols=266 Identities=12% Similarity=0.033 Sum_probs=207.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCChhhHHHHHHH-HHHcCCCCCcchHHHHH
Q 003315 416 VCYDVIVDSLCKLGEVEKAMILFKEMKDRQI--VPDVVNYTTMICGYCLQGKLGDALDLFKE-MKEMGHKPDIITYNVLA 492 (831)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~ 492 (831)
.+...+..+|...+++++|.++|+.+.+... .-+..+|.+.+-.+-+ +-++..+.+ +.+.. +-.+.+|..+.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~-~~sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTD-PNSPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhhC-CCCcHHHHHhc
Confidence 5556677778888888888888888776421 1255567766644321 233333332 33332 34678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHH---HHHHHHhcCCHHH
Q 003315 493 GAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSA---MINGYCKTGHTKE 569 (831)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~ 569 (831)
..|.-+++.+.|++.|++.++.+ +....+|+.+..-+....++|.|.+.|+.....+|.+||+ |+..|.++++++.
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhH
Confidence 99999999999999999998763 3467888888888888889999999999999999988666 6788999999999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003315 570 AFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVD 649 (831)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 649 (831)
|.-.|+++.+.++. +......++..+.+.|+.++|+++++++...+ +-|+..--..+..+...+++++|...++++.+
T Consensus 508 Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 508 AEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 99999999998876 78888889999999999999999999999876 34444445567788899999999999999998
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003315 650 KGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPD 690 (831)
Q Consensus 650 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 690 (831)
.-++ +...|..+...|.+.|+.+.|+.-|.-+.+...++.
T Consensus 586 ~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 586 LVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 6333 667888999999999999999999988887544443
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.9e-11 Score=118.11 Aligned_cols=255 Identities=14% Similarity=0.116 Sum_probs=186.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCC--CCcchHHHHHHHHHhcCC
Q 003315 423 DSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHK--PDIITYNVLAGAFAQYGA 500 (831)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 500 (831)
.++-...+.+++..-.+...+.|++-+...-+....+.-.+.++++|+.+|+++.+..+- -|..+|..++ |.++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 344444566666666666666666655544444445555667778888888877766321 1445555444 223222
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHH
Q 003315 501 VQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRL 577 (831)
Q Consensus 501 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 577 (831)
-. +.++..-...-.+--+.|...+.+-|+-.++.++|...|+...+.+|.. |..|+.-|....+...|++.++.+
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 21 1122211111012234566777777888888888888888888888776 788888899999999999999999
Q ss_pred HhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 003315 578 SNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLV 657 (831)
Q Consensus 578 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 657 (831)
++.++. |-..|..++++|..++-..=|+-.|+++.... +-|..+|.+|+++|.+.++.++|.+.|..+...|-. +..
T Consensus 391 vdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~ 467 (559)
T KOG1155|consen 391 VDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS 467 (559)
T ss_pred HhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence 888776 88889999999999999999999999998875 567889999999999999999999999999987544 668
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
.+..|.+.|-+.++..+|...|++.++
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999999988765
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=9.7e-12 Score=131.58 Aligned_cols=296 Identities=14% Similarity=0.027 Sum_probs=160.4
Q ss_pred HHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh
Q 003315 126 ILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSI 205 (831)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 205 (831)
+....|+++.|...+.+..+..+. ....+...+.+....|+++.|...+.++.+..+.+..
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~-------------------~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l 153 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAE-------------------PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI 153 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCC-------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch
Confidence 344577777777777665544221 1223445566677778888888888777665433333
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HH---
Q 003315 206 CSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYS-TC--- 281 (831)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l--- 281 (831)
.........+...|+++.|...++.+.+.. |.++.....+...+.+.|++++|.+.++.+.+.+.. +...+. .-
T Consensus 154 ~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a 231 (409)
T TIGR00540 154 LVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKA 231 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 333445667777788888888888877654 445667777777777888888888888877776533 222221 11
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC---CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHh
Q 003315 282 IEGLCMNGMLDLGYELLLKWEEAD---IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYA-YSALISGYCK 357 (831)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~ 357 (831)
...+...+..+++.+.+..+.+.. .+.++..+..++..+...|+.++|.+++++..+..+...... ..........
T Consensus 232 ~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~ 311 (409)
T TIGR00540 232 EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK 311 (409)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC
Confidence 111122233333334444444432 113666677777777777777777777777776533211111 1111122233
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHH
Q 003315 358 FGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMIL 437 (831)
Q Consensus 358 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 437 (831)
.++.+.+.+.++...+.... |. +.....++...+.+.|++++|.+.
T Consensus 312 ~~~~~~~~~~~e~~lk~~p~-~~---------------------------------~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKNVDD-KP---------------------------------KCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred CCChHHHHHHHHHHHHhCCC-Ch---------------------------------hHHHHHHHHHHHHHcccHHHHHHH
Confidence 45556666666555543211 11 013333444555555555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 003315 438 FKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEM 476 (831)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 476 (831)
|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 358 le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 358 FKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 553222222344444455555555555555555555543
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.7e-10 Score=112.93 Aligned_cols=362 Identities=12% Similarity=0.046 Sum_probs=269.5
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh--hH
Q 003315 306 IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCG--VL 383 (831)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~ 383 (831)
...|...+......+.+.|..+.|.+.|......-+ -.-..|..|.... .+.+.+.. +.. +...|.. .-
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-~~W~AWleL~~li---t~~e~~~~----l~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-WFWSAWLELSELI---TDIEILSI----LVV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-cchHHHHHHHHhh---chHHHHHH----HHh-cCcccchHHHH
Confidence 345666666666777788999999999988886522 1444454444332 22222222 111 1221111 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHH
Q 003315 384 SVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIV--PDVVNYTTMICGYC 461 (831)
Q Consensus 384 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~ 461 (831)
-.+..++....+.+++.+-.......|++.+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++ |.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HH
Confidence 2345566677789999999999999998888887777888888899999999999999876321 2566777776 44
Q ss_pred ccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 003315 462 LQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEA 541 (831)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 541 (831)
++.+- .+..+.+-.-.--+-.+.|..++.+-|+-.++.++|..+|++.++.+ +.....++.+..-|....+...|..
T Consensus 309 ~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 44322 22333222221123466788888889999999999999999999986 5567788888999999999999999
Q ss_pred HHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003315 542 FLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAE 618 (831)
Q Consensus 542 ~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 618 (831)
-++...+.+|.. |-.|+.+|.-.+.+.=|+-.|+++.+..+. |+..|..|+.+|.++++.++|+..|++++..+ .
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 999999999887 667999999999999999999999998776 89999999999999999999999999999877 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003315 619 PSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK----GLTPH--LVTYTMMIHGYCKINCLREARDVFNDMK 683 (831)
Q Consensus 619 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 683 (831)
.+...+..|.+.|-+.++.++|.+.|.+.++. |...+ ...---|..-+.+.+++++|........
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 56788999999999999999999999988762 33322 2222335666778888888877666554
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.59 E-value=1e-10 Score=123.25 Aligned_cols=655 Identities=12% Similarity=0.044 Sum_probs=321.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhc-CCCchhHHHHHHHHhcC-----CCcchHHHHHHHHH
Q 003315 105 FEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKK-TDANFEATDLIEALCGE-----GSTLLTRLSDAMIK 178 (831)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 178 (831)
+......|..|+..+|.+++..|+..|+.+.|- .|..+--.. |........++..-+.. .-.+.+.+|..|..
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLK 91 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHH
Confidence 334456788999999999999999999988776 443322111 11111001111000000 11344556666666
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcCChH
Q 003315 179 AYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKR-LGLSLNEYTYVIVIKALCKKGSMQ 257 (831)
Q Consensus 179 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 257 (831)
+|...|+... |+...+ ....+...+...|--.....++..+.- .+.-||.. ..+....-.|-++
T Consensus 92 ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwa 156 (1088)
T KOG4318|consen 92 AYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWA 156 (1088)
T ss_pred HHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHH
Confidence 6666666554 222222 122333444444444444444433221 11123322 2333445567777
Q ss_pred HHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 003315 258 EAVEVFLEMEKAGV-TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHM 336 (831)
Q Consensus 258 ~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 336 (831)
.+++++..+.-..- .|..+ .++-+.... .-..++........-.+++.++..++..-...|+++.|..++.+|
T Consensus 157 qllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 77777766543211 11111 233333322 223333333333322588999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHh
Q 003315 337 EKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKV 416 (831)
Q Consensus 337 ~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 416 (831)
.+.|+..+...+-.|+-+ .++...+..++.-|.+.|+.|+..|+...+-.+..+|....+.+ |. +...
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~s-q~~h 298 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GS-QLAH 298 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------cc-chhh
Confidence 999988787777666655 78888888999999999999999999888777777655322211 11 2222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH------------HHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCC--C
Q 003315 417 CYDVIVDSLCKLGEVEKAMILFK------------EMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGH--K 482 (831)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~------------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~ 482 (831)
.+++-+..-.-.| ..|.+.++ +..-.|+.-...+|...+ -...+|+-++..++...+..-.. .
T Consensus 299 g~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s 375 (1088)
T KOG4318|consen 299 GFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDS 375 (1088)
T ss_pred hhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccC
Confidence 2222222222233 12222221 111123332333443322 23347777777777777653211 1
Q ss_pred -CCcchHHHHHHHHHhcCCHHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh----CCCCC--
Q 003315 483 -PDIITYNVLAGAFAQYGAVQKAFDLLN--YMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKG----KCLEN-- 553 (831)
Q Consensus 483 -~~~~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-- 553 (831)
.++..|..++.-|.+.-+.-....++. ..++. ..+....-.+.+...+. +...+.+-+..+.. ...++
T Consensus 376 ~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~ 452 (1088)
T KOG4318|consen 376 GQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWP 452 (1088)
T ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccch
Confidence 123334444444333221111111111 11111 11111111122222211 11111111111110 01111
Q ss_pred ---------hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHH
Q 003315 554 ---------YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLN--AEPSKS 622 (831)
Q Consensus 554 ---------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~ 622 (831)
-+.++..++..-+..+++..-++....-+ +..|..++.-++...+.+.|..+.++..... ...|..
T Consensus 453 ~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~ 529 (1088)
T KOG4318|consen 453 LIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLP 529 (1088)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccH
Confidence 22334444444444444433333222211 1455566666666666666666666554322 123334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003315 623 MYDKLIGALCQAEEMEQAQLVFNVLVDKGL-TPH-LVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDA 700 (831)
Q Consensus 623 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 700 (831)
-+..+.+.+.+.+....+..++.++.+.-. .|+ ..+.-.+.+.....|+.+...++.+-+...|+.-+ .-++..
T Consensus 530 ~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~v 605 (1088)
T KOG4318|consen 530 LMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMV 605 (1088)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEE
Confidence 455566666666666666666666654211 111 12222334444455555555555444444333221 000001
Q ss_pred hhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHH---HHHHHHH------------------HHHhcCChHH
Q 003315 701 HSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVI---SYTVLIA------------------KLCNTQNLED 759 (831)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~------------------~~~~~g~~~~ 759 (831)
..++++...|.+.++...+ .++|.+. .+..++. .|.++|++.+
T Consensus 606 ---------------hLrkdd~s~a~ea~e~~~q-kyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~ 669 (1088)
T KOG4318|consen 606 ---------------HLRKDDQSAAQEAPEPEEQ-KYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVD 669 (1088)
T ss_pred ---------------EeeccchhhhhhcchHHHH-HhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccc
Confidence 1145677777877776653 2344443 3333322 2344455444
Q ss_pred HHHHHHHH--H-HCC---------CCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 760 GITVFNEI--S-DRG---------LEP---------DTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLE 818 (831)
Q Consensus 760 A~~~~~~~--~-~~g---------~~p---------d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~ 818 (831)
|.++.+.- . +.+ +.| +.....-|+..|.+.|+++.|..+|.++. +.|...+...|.
T Consensus 670 a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LA 746 (1088)
T KOG4318|consen 670 AGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLA 746 (1088)
T ss_pred hhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHH
Confidence 44433321 0 000 000 11233457778999999999999999998 788888888888
Q ss_pred HHHHhcc
Q 003315 819 RGIEKAR 825 (831)
Q Consensus 819 ~~~~~~~ 825 (831)
+.+.+-+
T Consensus 747 sIlr~~n 753 (1088)
T KOG4318|consen 747 SILRRMN 753 (1088)
T ss_pred HHHHhhc
Confidence 7776544
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=9.6e-12 Score=122.14 Aligned_cols=223 Identities=13% Similarity=0.062 Sum_probs=175.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH
Q 003315 422 VDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAV 501 (831)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 501 (831)
...+.-.|+.-.|..-|+........++ ..|..+...|....+.++-...|.+..+.++. +..+|..-.+...-.+++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHH
Confidence 3345567888899999998887654433 23777777899999999999999999887765 788888888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC---CChHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 502 QKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL---ENYSAMINGYCKTGHTKEAFQLFMRLS 578 (831)
Q Consensus 502 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (831)
++|..-|++.++.. +-+...|..+.-+..+.+++++++..|++..++-| +.|+.....+..++++++|.+.|+...
T Consensus 411 e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 411 EEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 99999999998864 44566666666667788999999999999988754 559999999999999999999999998
Q ss_pred hCCCCCC-----cccH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003315 579 NQGVLVK-----KSSC--NKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVD 649 (831)
Q Consensus 579 ~~~~~~~-----~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 649 (831)
+..+..+ ...+ ..++..-. .+++..|.++++++++.+ +-....|..|...-.+.|++++|.++|++...
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7755422 2111 12222222 289999999999999876 33456788899999999999999999998765
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.1e-11 Score=130.30 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=58.6
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 003315 309 SAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILK 388 (831)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 388 (831)
++.....+++.+...|+.++|.+++++..+. .||... .++.+.+..++.+++++..+...+..+ -|...+..+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgr 336 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQ 336 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 4444444445555555555555555444442 122211 112222233444445544444444322 13333444444
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 389 GLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
.+...+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++..
T Consensus 337 l~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555544443 2445555556666666666666666666543
No 50
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.58 E-value=5e-09 Score=107.32 Aligned_cols=425 Identities=17% Similarity=0.102 Sum_probs=264.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHH
Q 003315 95 RKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSD 174 (831)
Q Consensus 95 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (831)
.+++...+.+.+.+... ++-.+++.....-.|...|+-++|....+..++.+.. +...|.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-------------------S~vCwH 79 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-------------------SHVCWH 79 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-------------------cchhHH
Confidence 36788888888888764 3335666666677788899999999988877765433 556888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.++-.+...+++++|+..|+.++..+.. |...+.-+.-.-+..|+++.....-.++.+.. +.....|..++.++--.|
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHH
Confidence 8998899999999999999999998744 77777777666778888888888888877753 334567888888888899
Q ss_pred ChHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 255 SMQEAVEVFLEMEKAG-VTPNAFAYSTCI------EGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~-~~p~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
++..|..++++..+.. -.|+...+.... ....+.|.+++|.+.+...... +-.....-..-...+.+.++++
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHH
Confidence 9999999999988753 235555444332 4456778888888877765443 1222233345567788999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSA-LISGYCKFGKINKAL-LLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLE 405 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~-li~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 405 (831)
+|..++..++.. .||..-|.. +..++.+-.+--+++ .+|....+.-.. .......=+.......-.+..-+.+..
T Consensus 237 eA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 237 EAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred hHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHH
Confidence 999999999987 456555554 444443333333333 556555443111 100011111111111222333445555
Q ss_pred HHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCC----------CCCChhhHH--HHHHHHHccCChhhH
Q 003315 406 FKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK----DRQ----------IVPDVVNYT--TMICGYCLQGKLGDA 469 (831)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----------~~~~~~~~~--~li~~~~~~g~~~~A 469 (831)
..+.|+++ ++..+...|-.....+-..++.-.+. ..| -+|....|+ -++..+-+.|+++.|
T Consensus 314 ~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 314 LLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 56666543 22233333222111111111111111 110 134444444 345566777888888
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 003315 470 LDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGK 549 (831)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 549 (831)
...++......+. -+..|..-.+.+...|++++|..++++..+.. .+|...-.-...-..+.+++++|.++.......
T Consensus 391 ~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 391 LEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 8888877765321 23345555567777788888888888777654 445444445556666777777777776666554
Q ss_pred C
Q 003315 550 C 550 (831)
Q Consensus 550 ~ 550 (831)
+
T Consensus 469 ~ 469 (700)
T KOG1156|consen 469 G 469 (700)
T ss_pred c
Confidence 3
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.4e-11 Score=114.65 Aligned_cols=272 Identities=14% Similarity=0.093 Sum_probs=165.5
Q ss_pred CCChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHH
Q 003315 81 YLNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEA 160 (831)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 160 (831)
.++...+.++=+...++|++|...|..+.+.+. .+.++-.++...+-+.|..++|+.+-..+++. |+..++
T Consensus 34 ~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~------- 104 (389)
T COG2956 34 RLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFE------- 104 (389)
T ss_pred hccHHHHhHHHHHhhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchH-------
Confidence 345566666666777788888888888876532 25555667777777777788877777666554 322211
Q ss_pred HhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh
Q 003315 161 LCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNE 240 (831)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 240 (831)
.-..+...|++-|+..|-+|.|..+|..+...+ ..-..+...++..|-..++|++|+++-+++.+.+..+..
T Consensus 105 -------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 105 -------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred -------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence 123456677777888888888888887777654 234556677777777777888888777777765533221
Q ss_pred ----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 003315 241 ----YTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVV 316 (831)
Q Consensus 241 ----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (831)
..|..|...+....+++.|...+.++.+.+ +..+..-..+.+.....|+++.|.+.++.+.+.+...-+.+...|
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 134455555555667777777777776653 223334444556666666666666666666666544445555666
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 317 IRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMT 372 (831)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 372 (831)
..+|...|+.++....+..+.+... ....-..+...-....-.+.|...+.+-+
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 6666666666666666666665422 22233333333333444444544444433
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.3e-14 Score=145.85 Aligned_cols=260 Identities=16% Similarity=0.123 Sum_probs=89.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcC-CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRG-FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
.++..+.+.|++++|++++.+..... ++.+...+..+.......++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 66888888999999999996654443 34466666667777778888999999999988765 3356677777766 688
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHhHHHHH
Q 003315 254 GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEAD-IPLSAFAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
+++++|.+++++..+. .++...+..++..+...++++++..+++.+.... .+.+...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999988877665 3566667778888888899999988888877542 356777888888888888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFF 412 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (831)
+++..+..+. |......++..+...|+.+++.++++...+.. +.|
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~--------------------------------- 213 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDD--------------------------------- 213 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTS---------------------------------
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCH---------------------------------
Confidence 9888887443 57778888888888888888888887776643 222
Q ss_pred cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 003315 413 LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEM 476 (831)
Q Consensus 413 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 476 (831)
...+..+..++...|+.++|+.+|++..... +.|+.....+..++...|+.++|.++.+++
T Consensus 214 --~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 214 --PDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp --CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred --HHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 2333444555555555555555555544421 124444555555555555555555555444
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.5e-14 Score=145.29 Aligned_cols=260 Identities=13% Similarity=0.057 Sum_probs=103.1
Q ss_pred HHHHhccCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCc
Q 003315 89 EKLYSLRKEPKIALSFFEQLKRSG-FSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGST 167 (831)
Q Consensus 89 ~~l~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (831)
..++...|+++.|++++....... .+.++..|..++.+....++++.|...+.+++..++.
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~------------------ 76 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA------------------ 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------------------
Confidence 556667788888888886554332 2446666766777777788888888888887766332
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC-CCCChhhHHHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLG-LSLNEYTYVIV 246 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l 246 (831)
++..+..++.. ...+++++|..++++..+.. ++...+...+..+.+.++++++..+++.+.... .+.++..|..+
T Consensus 77 -~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (280)
T PF13429_consen 77 -NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL 152 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH
T ss_pred -ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 33445566666 68888888888887766553 345556777788888888888888888876432 24566777788
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
...+.+.|+.++|++.++++++.. +.|......++..+...|+.+++.+++....+.. +.++..+..++.++...|+.
T Consensus 153 a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccc
Confidence 888888888888888888888763 2246677778888888888888888888877764 56667778888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
++|...|++..+..+. |......+..++.+.|+.++|.++.++...
T Consensus 231 ~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 231 EEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHHSTT--HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 8888888888876433 777777888888888888888888776543
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=7.2e-12 Score=131.69 Aligned_cols=221 Identities=12% Similarity=0.052 Sum_probs=107.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCc-------chHHHHHHH
Q 003315 422 VDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDI-------ITYNVLAGA 494 (831)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~ 494 (831)
...+...|+++.|...++++.+.... ++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34445555566666665555544322 4444555555566666666666666665554432111 111222222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHH
Q 003315 495 FAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLF 574 (831)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 574 (831)
.....+.+...++++.+.+. .+.++.....+...+...|+.++|.+.+++..+..++.--.++.+....++.+++++..
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHH
Confidence 22233344444444444332 23455555556666666666666666666555543333222333333445555555555
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003315 575 MRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTP 654 (831)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 654 (831)
++..+..+. | ......++..+.+.|++++|.+.|+...+. .|
T Consensus 318 e~~lk~~P~-~-----------------------------------~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P 359 (398)
T PRK10747 318 RQQIKQHGD-T-----------------------------------PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RP 359 (398)
T ss_pred HHHHhhCCC-C-----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 555544332 3 333444445555555555555555555543 34
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003315 655 HLVTYTMMIHGYCKINCLREARDVFNDM 682 (831)
Q Consensus 655 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 682 (831)
+...+..+...+.+.|+.++|.+.+++-
T Consensus 360 ~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 360 DAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444445555555555555555555544
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=2.1e-11 Score=113.56 Aligned_cols=223 Identities=13% Similarity=0.061 Sum_probs=154.6
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHhcC
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNE------YTYVIVIKALCKKG 254 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g 254 (831)
.-+++.++|++.|-.+.+.++. ...+-.++.+.|.+.|+.|.|+++.+.+.+. ||. .....|..=|...|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 3467899999999999987644 6777788999999999999999999998874 442 24456677788899
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHhHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS----AFAYTVVIRWFCDQNKLEKAE 330 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 330 (831)
-++.|+++|..+.+.+ .--......|+..|-...+|++|++.-+++.+.+-.+. ...|..|...+....+++.|.
T Consensus 122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999888754 33445677788888888888888888888877653332 224555556666667777888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 331 CVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDM 409 (831)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 409 (831)
.++.+..+.+.+ .+..--.+.+.+...|++++|.+.++...+.+..--..+...+..+|...|+.++....+..+.+.
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888777776433 333344466777777888888877777777654433344444444455555555544444444443
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2e-12 Score=132.35 Aligned_cols=287 Identities=14% Similarity=0.086 Sum_probs=141.2
Q ss_pred hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHH
Q 003315 186 FDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL--SLNEYTYVIVIKALCKKGSMQEAVEVF 263 (831)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (831)
.++|+..|.++.... .....+...++.+|...+++++|+++|+.+.+... -.+...|.+.+..+-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 345555555533322 11224444455555555555555555555443210 0133344444433311 1111111
Q ss_pred -HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 003315 264 -LEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVV 342 (831)
Q Consensus 264 -~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 342 (831)
+++.+.. +..+.+|..+..+|.-+++.+.|++.|++.++.+ |-...+|+.+..-+....++|.|...|+..+.-.+.
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 1222211 2233455555555555555555555555555443 334455555555555555555555555555442111
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHH
Q 003315 343 PDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIV 422 (831)
Q Consensus 343 p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 422 (831)
+-..|..+..+|.++++++.|+-.|+...+.++. +.+....+...+.+.|+.++|+++++++...... |+..--.-+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 1122333445555555555555555555544322 3344444445555555555555555555544333 333333445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCC
Q 003315 423 DSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKP 483 (831)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 483 (831)
..+...+++++|+..++++++. ++.+...+..+...|.+.|+.+.|+.-|.-+.+..+++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 5566667777777777777764 23355566667777777777777777777776654443
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.52 E-value=2.6e-09 Score=111.58 Aligned_cols=515 Identities=13% Similarity=0.004 Sum_probs=267.7
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCCChhhHHHHHHHHHHh-cCCC--chhHH----HHH
Q 003315 89 EKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRIL---CCCGWQKKLESMLLELVRK-KTDA--NFEAT----DLI 158 (831)
Q Consensus 89 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~-~~~~--~~~~~----~~~ 158 (831)
..|+...+++..+..-|..+..++.+.++..+.++-..+ .-.++.+++ .+...+.. ..+. ..++. -.+
T Consensus 234 ~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~ 311 (799)
T KOG4162|consen 234 PILWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLL 311 (799)
T ss_pred HHHhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHH
Confidence 345556677788888888777666666666665543322 223334443 22222222 1111 11111 122
Q ss_pred HHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003315 159 EALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSL 238 (831)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 238 (831)
..++...+..++.+|..|.-+....|+++.+.+.|++....-+. ....|..+...+...|....|+.+++.-......|
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 33344455667788888888888888888888888887765433 56667888888888888888888887765432123
Q ss_pred -ChhhHHHHHHHHH-hcCChHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc----C-------ChhHHHHHHHHH
Q 003315 239 -NEYTYVIVIKALC-KKGSMQEAVEVFLEMEKA--GV--TPNAFAYSTCIEGLCMN----G-------MLDLGYELLLKW 301 (831)
Q Consensus 239 -~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~--~~--~p~~~~~~~l~~~~~~~----~-------~~~~a~~~~~~~ 301 (831)
++..+......|. +.|.+++++....++... +. .-....|..+.-+|... . .-.++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 3333333334444 346677777777766651 11 12334455554444421 1 123456667777
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh
Q 003315 302 EEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCG 381 (831)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 381 (831)
.+.+ +.|+.+...+.--|+..++++.|.+..++..+.+...+...|..|...+...+++.+|+.+.+.....-.. |..
T Consensus 471 v~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~ 548 (799)
T KOG4162|consen 471 VQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHV 548 (799)
T ss_pred HhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhh
Confidence 6665 44555555566667777778888888887777755557777777777777778888888777766543110 111
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHH
Q 003315 382 VLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR--QIVPDVVNYTTMICG 459 (831)
Q Consensus 382 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~ 459 (831)
....-+..-..-++.++++.....++..-.. .... ...++-....+....+.-. .......++..+...
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~--~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEA--EYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHh--hhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 1111111111233333333333322211000 0000 0000001111111111000 000011111111111
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003315 460 YCLQGKLGDALDLFKEMKEMGHKPDII-TYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEE 538 (831)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 538 (831)
....+. .+..-.. +....+.|... ++... ...+......+.+.+..++
T Consensus 620 ~a~~~~--~~~se~~-Lp~s~~~~~~~~~~~~~----------------------------~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 620 VASQLK--SAGSELK-LPSSTVLPGPDSLWYLL----------------------------QKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred HHhhhh--hcccccc-cCcccccCCCCchHHHH----------------------------HHHHHHHHHHHHhcCCchH
Confidence 100000 0000000 11111111111 00000 1122233344555566666
Q ss_pred HHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH--HHHHHH
Q 003315 539 AEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALK--LFKTMI 613 (831)
Q Consensus 539 a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~ 613 (831)
|...+.+....++.. |...+..+...|..++|.+.|......++. ++.+...++..+.+.|+..-|.. ++..+.
T Consensus 669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 666665555555544 555556666667777777777776666554 56667777777777776666655 777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 614 TLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 614 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 650 (831)
+.+ +.+...|-.++.++-+.|+.++|.+.|+.+.+.
T Consensus 748 r~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 748 RLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 765 456777777888888888888888888777654
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=3.8e-10 Score=106.32 Aligned_cols=157 Identities=10% Similarity=0.105 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCC
Q 003315 635 EEMEQAQLVFNVLVDKGLTPHLV-TYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSP 713 (831)
Q Consensus 635 g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 713 (831)
..+..|.+.|+..-+.+..-|.. .-.++...+.-..++++.+..++.....-...|...++..-.-+.
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~a----------- 405 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLA----------- 405 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHH-----------
Confidence 34566777777666555444432 344566666666777888888877776545555555554433332
Q ss_pred chhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCH
Q 003315 714 DALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY-TALLCGYLAKGDL 792 (831)
Q Consensus 714 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~-~~l~~~~~~~g~~ 792 (831)
.|++.+|.++|-.+....++-+......|.++|.++++++-|++++-++- .+.+..+. ..+..-|.+.+.+
T Consensus 406 -----tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 406 -----TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred -----hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHH
Confidence 36678888887766544433333334677788888888888887776653 22233333 3445668888888
Q ss_pred HHHHHHHHHHHhCCCCCCHH
Q 003315 793 DRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 793 ~~A~~~~~~~~~~g~~pd~~ 812 (831)
--|-+.|+++.. ++|+..
T Consensus 478 yyaaKAFd~lE~--lDP~pE 495 (557)
T KOG3785|consen 478 YYAAKAFDELEI--LDPTPE 495 (557)
T ss_pred HHHHHhhhHHHc--cCCCcc
Confidence 888888887776 444443
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=1.3e-07 Score=96.74 Aligned_cols=500 Identities=12% Similarity=0.088 Sum_probs=280.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003315 278 YSTCIEGLCMNGMLDLGYELLLKWEEA-DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYC 356 (831)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 356 (831)
|...+..+.++|++......|...+.. .+.....+|...+......+-.+.+..++++.++- ++..-+..|..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 333344444444444444444444432 11112234444444444444444555555554443 2222334444444
Q ss_pred hcCChHHHHHHHHHHHhCC------CCCCHhhHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCcCHhhHHHHHHHHHh
Q 003315 357 KFGKINKALLLHHEMTSKG------IKTNCGVLSVILKGLCQKGMASA---TIKQFLEFKDMGFFLNKVCYDVIVDSLCK 427 (831)
Q Consensus 357 ~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 427 (831)
+.+++++|-+.+...+... .+.+...|..+....++..+.-. ...+++.....-...-...|+.|.+-|.+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 5555555554444443221 11222233333333222222111 11222222221111123456777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----------------cC------ChhhHHHHHHHHHHcCC----
Q 003315 428 LGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCL----------------QG------KLGDALDLFKEMKEMGH---- 481 (831)
Q Consensus 428 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~g------~~~~A~~~~~~~~~~~~---- 481 (831)
.|.+++|.++|++....- .+..-|+.+...|+. .| +++-.+..|+.+....+
T Consensus 261 ~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 777777777777655431 122223333333221 11 22333444444443321
Q ss_pred -------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 003315 482 -------KPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEP------NFVTHNMIIEGLCMGGRVEEAEAFLDGLKG 548 (831)
Q Consensus 482 -------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (831)
..++..|..-+.. ..|+..+....+.++++. +.| -...+..+.+.|...|+++.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 1133444433332 356778888888888764 222 234677888889999999999999999887
Q ss_pred CCCCC-------hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------------cccHHHHHHHHHhcCCHHH
Q 003315 549 KCLEN-------YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVK-----------------KSSCNKLITNLLILRDNNN 604 (831)
Q Consensus 549 ~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~ 604 (831)
..-.. |-.....-.+..+++.|+.+.+++....-.|. ...|...+...-..|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 75544 44444445567789999999888765422211 1123444444455688888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHH-c--CCHHHHHHHHH
Q 003315 605 ALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHL-VTYTMMIHGYCK-I--NCLREARDVFN 680 (831)
Q Consensus 605 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~-~--g~~~~A~~~~~ 680 (831)
...++++++...+.....+.| ..-.+-...-++++.+++++-+..=..|+. ..|+..+.-+.+ - -.++.|..+|+
T Consensus 496 tk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 889999998876543333322 223344556678888888776665334554 467777666553 2 36799999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChH
Q 003315 681 DMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDV--ISYTVLIAKLCNTQNLE 758 (831)
Q Consensus 681 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~ 758 (831)
+.++ |++|...-+..++-+-.. . ..|-...|..++++... ++++.. ..||..|.--...=-+.
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lE--E-----------e~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~ 639 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLE--E-----------EHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVP 639 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHH--H-----------HhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 9998 788876665555544332 1 34557788999998663 445544 47888887655555567
Q ss_pred HHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 759 DGITVFNEISDRGLEPDTVT---YTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 759 ~A~~~~~~~~~~g~~pd~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
...++++++++. -||... +--....=.+.|..+.|+.++.-..+
T Consensus 640 ~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 640 RTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred ccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 788999999984 666544 33444556688999999999887766
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=6.9e-09 Score=98.06 Aligned_cols=411 Identities=12% Similarity=0.079 Sum_probs=207.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 212 MNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGML 291 (831)
Q Consensus 212 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 291 (831)
+.-+....++..|..+++--...+-.....+-..+...+.+.|++++|+..+.-+.... .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34444555666666665554432211111222233344445666666666665555432 44445555555555555555
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 292 DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEM 371 (831)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~ 371 (831)
.+|..+-.+. +.++-.-..+...-.+.++-++-....+.+.. ...--.+|.++..-.-.+.+|+++++..
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544331 22222222333333344444444444333332 1122233333333344455555555555
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 003315 372 TSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDV-IVDSLCKLGEVEKAMILFKEMKDRQIVPDV 450 (831)
Q Consensus 372 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 450 (831)
+..+ |+....|. +.-+|.+..-++-+.++++-.... ++.++
T Consensus 178 L~dn-------------------------------------~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdSt 219 (557)
T KOG3785|consen 178 LQDN-------------------------------------PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDST 219 (557)
T ss_pred HhcC-------------------------------------hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcH
Confidence 4432 11222222 223444555556666666554432 22233
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003315 451 VNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQY-----GAVQKAFDLLNYMKRHGLEPNFVTHNM 525 (831)
Q Consensus 451 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ 525 (831)
...|.......+.=+-..|..-.+++.+.+-. . | ..+.-+++. .+-+.|++++--+.+. .|... -.
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEAR--lN 290 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEAR--LN 290 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHhh--hh
Confidence 33443333333322222333334444333211 1 1 122222222 2446677776666543 33322 22
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHH
Q 003315 526 IIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKT-------GHTKEAFQLFMRLSNQGVLVK-KSSCNKLITNLL 597 (831)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-------g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 597 (831)
++-.|.+.+++.+|..+.+.+....|..|-.-+..++.. .+.+-|.+.|+-.-+.+..-| .....++...++
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 333577788888888777665544443332222222222 245566666665555544333 334556666777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHHcCCHHHHH
Q 003315 598 ILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTY-TMMIHGYCKINCLREAR 676 (831)
Q Consensus 598 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~ 676 (831)
-..++++.+..+..+...-...|...+| +..+++..|.+.+|+++|-.+....++ |..+| ..|.++|.++|+++-|.
T Consensus 371 L~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHH
Confidence 7788888888888777665444554443 677888889999999998877655444 55555 45567888999998888
Q ss_pred HHHHHH
Q 003315 677 DVFNDM 682 (831)
Q Consensus 677 ~~~~~m 682 (831)
+++-++
T Consensus 449 ~~~lk~ 454 (557)
T KOG3785|consen 449 DMMLKT 454 (557)
T ss_pred HHHHhc
Confidence 776655
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-08 Score=107.03 Aligned_cols=129 Identities=13% Similarity=0.066 Sum_probs=108.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQ 633 (831)
Q Consensus 554 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 633 (831)
|......+.+.++.++|...+.++....+. ....|...+..+...|..++|.+.|..+...+ +.+..+..++..++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 445667778889999999999888877543 66777778888889999999999999998765 3456678889999999
Q ss_pred cCCHHHHHH--HHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 634 AEEMEQAQL--VFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 634 ~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
.|+...|.. ++..+++.++. +...|..+...+-+.|+.++|.+-|....+.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 999888887 99999998765 8899999999999999999999999987753
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=2.9e-09 Score=103.04 Aligned_cols=287 Identities=10% Similarity=-0.010 Sum_probs=169.1
Q ss_pred HcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhh
Q 003315 128 CCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICS 207 (831)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 207 (831)
...|+|.+|..++.++-+..+. ....|...+.+--..|+.+.|-..+.++.+...+++...
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~-------------------p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v 155 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ-------------------PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAV 155 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc-------------------hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHH
Confidence 3477888887777764443221 223555666666778888888888888887755666777
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHH
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAF-------AYST 280 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ 280 (831)
.....+.+...|+++.|..-.+++.+.+ +.++.......+.|.+.|++.....++.++.+.|.-.+.. +|..
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 7777788888888888888888887765 4566777778888888888888888888888877554443 3444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003315 281 CIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGK 360 (831)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 360 (831)
+++-....+..+.-....+..... ...++..-..++.-+.++|+.++|.++.++..+++.+|.. ...-.+.+.++
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d 309 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGD 309 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCC
Confidence 444443333333322333332222 2334555556666666666666666666666665544431 11122334455
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 361 INKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKE 440 (831)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (831)
.+.-++..++-.+.... ++..+.+|...|.+.+.+.+|...|+.
T Consensus 310 ~~~l~k~~e~~l~~h~~------------------------------------~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 310 PEPLIKAAEKWLKQHPE------------------------------------DPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred chHHHHHHHHHHHhCCC------------------------------------ChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55444444444433111 224444555555555555555555554
Q ss_pred HHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHH
Q 003315 441 MKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMK 477 (831)
Q Consensus 441 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 477 (831)
..+. .|+..+|+-+..++.+.|+..+|.++.++..
T Consensus 354 Al~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 354 ALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4432 3455555555555555555555555555544
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=6.4e-10 Score=107.44 Aligned_cols=289 Identities=11% Similarity=0.055 Sum_probs=153.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
.|+|.+|++...+..+.+ +.....|..-+.+-.+.||.+.+-.++.++.+.--.++........+.....|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777766665 2233455555666667777777777777777663345556666677777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFF 412 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (831)
++++.+.++. +........++|.+.|++.....++..+.+.+.-.+...-.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 7777776554 55666777777888888888888887777776554432110
Q ss_pred cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHH
Q 003315 413 LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLA 492 (831)
Q Consensus 413 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 492 (831)
....+|+.+++-....+..+.-..++++...+ ..-++..-..++.-+.+.|+.++|.++.++..+.+..|. ....
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~ 301 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRL 301 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHH
Confidence 01122333333333333333333344443321 112333444444555555555555555555555443333 1111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC--hHHHHHHHHhcCCHHHH
Q 003315 493 GAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN--YSAMINGYCKTGHTKEA 570 (831)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A 570 (831)
-.+.+.++...-++..++-.+. .+.++..+..+...|.+.+.+.+|...|+...+..++. |+.+...+.+.|+..+|
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 1233444444444444444332 13333444455555555555555555555444433322 44444444444544444
Q ss_pred HHHHHHH
Q 003315 571 FQLFMRL 577 (831)
Q Consensus 571 ~~~~~~~ 577 (831)
.++.++.
T Consensus 381 ~~~r~e~ 387 (400)
T COG3071 381 EQVRREA 387 (400)
T ss_pred HHHHHHH
Confidence 4444443
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.45 E-value=1e-08 Score=105.08 Aligned_cols=600 Identities=14% Similarity=0.060 Sum_probs=363.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
..++ +...+++...+...+++++.. +-...+....+-.+...|+.++|......-...+ ..+.+.|..+.-.+....
T Consensus 13 ~~lk-~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 13 RALK-CYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHH-HHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhh
Confidence 3444 446788999999999988854 3366677666667778899999998888777644 456778888888888889
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLL 334 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 334 (831)
++++|++.|+.++..+ +.|...+.-+.-.-.+.++++.....-.+..+.. +.....|..++.++.-.|++..|..+++
T Consensus 90 ~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998875 5567777777777778888888877777777663 5566778888888889999999999999
Q ss_pred HHHHCC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 335 HMEKQG-VVPDVYAYSALI------SGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFK 407 (831)
Q Consensus 335 ~~~~~~-~~p~~~~~~~li------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 407 (831)
+..+.. -.|+...+.... ....+.|..++|++.+..-... +.........-...+.+.++.++|..++..++
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 888764 245555554432 3455678888888777654332 22122233445566778899999999999988
Q ss_pred HCCCCcCHhhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCChhhHHHH-HHHHHccCChhhHHHHHHHHHHcCCCCCc
Q 003315 408 DMGFFLNKVCYDVIVDSLCKLGEVEKAM-ILFKEMKDRQIVPDVVNYTTM-ICGYCLQGKLGDALDLFKEMKEMGHKPDI 485 (831)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 485 (831)
..++. +...|..+..++.+..+.-+++ .+|....+. .|....-..+ +.......-.+..-.++..+.+.|+++-
T Consensus 247 ~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v- 322 (700)
T KOG1156|consen 247 ERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV- 322 (700)
T ss_pred hhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch-
Confidence 87532 3444445555554343444444 666655543 1111111111 1111112223334456666777776542
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 003315 486 ITYNVLAGAFAQYGAVQKAFDLLNYMK----RHG----------LEPNF--VTHNMIIEGLCMGGRVEEAEAFLDGLKGK 549 (831)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 549 (831)
+..+...|-.....+-..++.-.+. ..| -+|.. .++..++..+-+.|+++.|..+++.....
T Consensus 323 --f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 323 --FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred --hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 3333333322221111111111111 110 13443 34556677788999999999999999988
Q ss_pred CCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----
Q 003315 550 CLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKS---- 622 (831)
Q Consensus 550 ~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---- 622 (831)
+|.. |-.-...+...|.+++|...+++..+.+.. |..+-...+.-..+.++.++|.++.....+.|. +..
T Consensus 401 TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~ 477 (700)
T KOG1156|consen 401 TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLA 477 (700)
T ss_pred CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHH
Confidence 8876 444467888999999999999999887643 666555777777888999999999998887764 221
Q ss_pred ----HHHH--HHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHhHHH----------HHHHHHHHc---C----CHHH
Q 003315 623 ----MYDK--LIGALCQAEEMEQAQLVFNVLVDK-----GLTPHLVTYT----------MMIHGYCKI---N----CLRE 674 (831)
Q Consensus 623 ----~~~~--l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~----------~l~~~~~~~---g----~~~~ 674 (831)
+|-. -+.+|.++|++..|.+-|..+.+. .-+.|-.+|. -|+...-.. - -...
T Consensus 478 ~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~ 557 (700)
T KOG1156|consen 478 EMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKG 557 (700)
T ss_pred HhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 2222 245677888888887766655432 1122333331 121111100 0 0133
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-HHHHHhhccccCCCCCCCchh--hcccCHHHHHHHHHHHH---------HcCCC--CC
Q 003315 675 ARDVFNDMKQRGITPDVVTYT-VLFDAHSKINLKGSSSSPDAL--QCKEDVVDASVFWNEMK---------EMGIR--PD 740 (831)
Q Consensus 675 A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~m~---------~~~~~--p~ 740 (831)
|+++|=+|.+. |+..+-. .-+...+ .+.-.. ..+.+-.+|..--+.+. +.|.+ ||
T Consensus 558 Ai~iYl~l~d~---p~~~~~~~~~~~~ms--------~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d 626 (700)
T KOG1156|consen 558 AIEIYLRLHDS---PNMYTNKADEIEKMS--------DEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDID 626 (700)
T ss_pred HHHHHHHHhcC---cccccccchhhhhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Confidence 45555555542 2110000 0000000 000000 01111122222222211 12222 44
Q ss_pred HHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 741 VISYTVLIAKLCNTQN-LEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 741 ~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
.. .+...+.+..+ +++|.+.+...... .+.+..+|.--...|.+.|++.-+.+.+++...
T Consensus 627 ~~---~~gekL~~t~~Pl~ea~kf~~~l~~~-~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~ 687 (700)
T KOG1156|consen 627 ED---PFGEKLLKTEDPLEEARKFLPNLQHK-GKEKGETYILSFELYYRKGKFLLALACLNNAEG 687 (700)
T ss_pred Cc---chhhhHhhcCChHHHHHHHHHHHHHh-cccchhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 44 34455566655 57799988888876 566777877777889999999999999888765
No 65
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=3.8e-07 Score=97.96 Aligned_cols=81 Identities=12% Similarity=0.061 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLER 819 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~ 819 (831)
.+..|+.+..+-.+.|...+|++-|-++- |+..|...+....+.|++++-.+++...+++.-+|...+ .|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHH
Confidence 34588889999999999999988776653 788888999999999999999999988888777777653 5778
Q ss_pred HHHhccccc
Q 003315 820 GIEKARILQ 828 (831)
Q Consensus 820 ~~~~~~~~~ 828 (831)
+|.|.+|+.
T Consensus 1175 AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1175 AYAKTNRLT 1183 (1666)
T ss_pred HHHHhchHH
Confidence 888888763
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=7.6e-09 Score=99.90 Aligned_cols=274 Identities=15% Similarity=0.009 Sum_probs=204.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 003315 516 LEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSA---MINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKL 592 (831)
Q Consensus 516 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (831)
++.|......+.+++...|+.++|+..|++....+|.+... ....+.+.|++++...+...+...... ...-|.--
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhh
Confidence 56677777888888888888888888888887777766333 344455677777777776666544211 33334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 003315 593 ITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCL 672 (831)
Q Consensus 593 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 672 (831)
+..++..+++..|+.+-++.++.+ +.+...+..-+..+...|+.++|.-.|..+....+. +...|.-|+..|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchH
Confidence 556677788899999988888765 344555666677888999999999999998876333 889999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH-HHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 003315 673 REARDVFNDMKQRGITPDVVTYTVL-FDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVI-SYTVLIAK 750 (831)
Q Consensus 673 ~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~ 750 (831)
.+|.-+-+...+. +..+..+...+ -..|.. ....-++|.+++++-.. +.|+-. ..+.+...
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~--------------dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL 447 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFP--------------DPRMREKAKKFAEKSLK--INPIYTPAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeecc--------------CchhHHHHHHHHHhhhc--cCCccHHHHHHHHHH
Confidence 9998877766553 33344454444 133432 12345788888887654 356553 67888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 751 LCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT 813 (831)
Q Consensus 751 ~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 813 (831)
+...|+.++++.++++... ..||....+.|+..+...+.+.+|++.|...++ ++|.+..
T Consensus 448 ~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~ 506 (564)
T KOG1174|consen 448 CQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKR 506 (564)
T ss_pred HHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchH
Confidence 9999999999999999986 688999999999999999999999999999988 7887754
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=7.9e-11 Score=129.61 Aligned_cols=217 Identities=13% Similarity=0.069 Sum_probs=167.7
Q ss_pred ChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHcCCC
Q 003315 132 WQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVS---------VGMFDEGIDILFQINRRGFV 202 (831)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~ 202 (831)
..++|...+.+.++.+|. ++.++..++.+|.. .+++++|...++++++.++.
T Consensus 276 ~~~~A~~~~~~Al~ldP~-------------------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-------------------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-------------------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 356788888888887554 34566666665542 34589999999999999855
Q ss_pred cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 003315 203 WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA-FAYSTC 281 (831)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l 281 (831)
+..++..+..++...|++++|...|++.++.+ |.+...+..+...+...|++++|+..++++.+.+ |+. ..+..+
T Consensus 337 -~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~ 412 (553)
T PRK12370 337 -NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITK 412 (553)
T ss_pred -CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHH
Confidence 88888889999999999999999999999875 4567788889999999999999999999999874 443 333444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 282 IEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKI 361 (831)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 361 (831)
+..+...|++++|...++++.+...+.++..+..+...+...|++++|...++++...... +....+.+...|+..|
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--
Confidence 5557778999999999999887653445667888899999999999999999998765222 4445566667777777
Q ss_pred HHHHHHHHHHHhC
Q 003315 362 NKALLLHHEMTSK 374 (831)
Q Consensus 362 ~~A~~~~~~~~~~ 374 (831)
++|...++.+.+.
T Consensus 490 ~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 ERALPTIREFLES 502 (553)
T ss_pred HHHHHHHHHHHHH
Confidence 4777777776653
No 68
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=5.9e-08 Score=101.70 Aligned_cols=528 Identities=15% Similarity=0.150 Sum_probs=293.1
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--------CC-CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRR--------GF-VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN 239 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 239 (831)
+..+|..+++.|++.++++-|.-.+-.|... .. .++ ..-....-.....|..++|+.+|.+-.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 4468889999999998888887666544321 11 121 2333344455678999999999988765
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----------HHCCC---
Q 003315 240 EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKW----------EEADI--- 306 (831)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~~--- 306 (831)
|..|-+.|...|.+++|+++-+.--.. .=..||.....-+...+|.+.|++.|++. +..+.
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 345556778889999999987653222 23346777777777888888888888652 22110
Q ss_pred ------CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 307 ------PLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNC 380 (831)
Q Consensus 307 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 380 (831)
..|...|.-....+-..|+++.|+.++..... |..+....|-+|+.++|-.+-++- -|.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccH
Confidence 11233344444444456777777777766553 566777788889999988876653 255
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--------CcCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCh
Q 003315 381 GVLSVILKGLCQKGMASATIKQFLEFKDMGF--------FLNKVCYDVIVDSLCKL--GEVEKAMILFKEMKDRQIVPDV 450 (831)
Q Consensus 381 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~ 450 (831)
.....+.+.|...|++.+|+..|.......- ..+.. |.+.+... .+.-.|-+.|++...
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~----L~nlal~s~~~d~v~aArYyEe~g~------- 1036 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDR----LANLALMSGGSDLVSAARYYEELGG------- 1036 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH----HHHHHhhcCchhHHHHHHHHHHcch-------
Confidence 6677888889999999999988876543210 01111 11111111 223334444444321
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHH--------HHHc--CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003315 451 VNYTTMICGYCLQGKLGDALDLFKE--------MKEM--GHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNF 520 (831)
Q Consensus 451 ~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 520 (831)
-....+..|-+.|.+.+|+++--+ ++.. ....|+...+.-.+-++...++++|..++....+.
T Consensus 1037 -~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~------ 1109 (1416)
T KOG3617|consen 1037 -YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF------ 1109 (1416)
T ss_pred -hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------
Confidence 112233457777887777765322 1222 23345666677777778888888888887766542
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhC---CCCC------hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 003315 521 VTHNMIIEGLCMGGRVEEAEAFLDGLKGK---CLEN------YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNK 591 (831)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 591 (831)
...+ .+|+..++.-.+++-+.|... .++. ...+...+.++|.+..|-+-|.++-.. ..
T Consensus 1110 ---~~Al-qlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~ 1176 (1416)
T KOG3617|consen 1110 ---SGAL-QLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LS 1176 (1416)
T ss_pred ---HHHH-HHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HH
Confidence 2222 223333333333333333211 1111 455677788888888887766543211 23
Q ss_pred HHHHHHhcCCHHHHH---------HH----HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 003315 592 LITNLLILRDNNNAL---------KL----FKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVT 658 (831)
Q Consensus 592 l~~~~~~~~~~~~a~---------~~----~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 658 (831)
.++++.+.|+.++.. ++ -..+...++..++.+...++.-|.+..-++---.+++...+- .+..
T Consensus 1177 AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee 1252 (1416)
T KOG3617|consen 1177 AMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEE 1252 (1416)
T ss_pred HHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHH
Confidence 455666666655421 01 122233455666666666666666655555444444444332 2222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccccCCCCCCCchh-hcccCHHHHHHHHHHHHHcC
Q 003315 659 YTMMIHGYCKINCLREARDVFNDMKQRGITPDVV-TYTVLFDAHSKINLKGSSSSPDAL-QCKEDVVDASVFWNEMKEMG 736 (831)
Q Consensus 659 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~m~~~~ 736 (831)
|..+-.+ .|-.++|..-+.+...++ +.. .++.|-.-...... ..... .-+++..+.+.-.+.|.+..
T Consensus 1253 ~q~ydKa---~gAl~eA~kCl~ka~~k~---~~~t~l~~Lq~~~a~vk~-----~l~~~q~~~eD~~~~i~qc~~lleep 1321 (1416)
T KOG3617|consen 1253 LQTYDKA---MGALEEAAKCLLKAEQKN---MSTTGLDALQEDLAKVKV-----QLRKLQIMKEDAADGIRQCTTLLEEP 1321 (1416)
T ss_pred HhhhhHH---hHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHH-----HHHHHHHhhhhHHHHHHHHHHHhhCc
Confidence 2222222 234455555555554332 111 12221111110000 00000 01345555566666666555
Q ss_pred CCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 737 IRPDV----ISYTVLIAKLCNTQNLEDGITVFNEISDR 770 (831)
Q Consensus 737 ~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 770 (831)
..||+ ..|..+|..+....++..|...+++|..+
T Consensus 1322 ~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1322 ILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred CCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 44443 36777888888888888888888888765
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=6.9e-11 Score=130.05 Aligned_cols=251 Identities=12% Similarity=0.084 Sum_probs=186.4
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---------CCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCC
Q 003315 96 KEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCC---------CGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGS 166 (831)
Q Consensus 96 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (831)
++.+.|+.+|+++...++. ++..|..++.++.. .++.++|...+.++++.+|.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~----------------- 336 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN----------------- 336 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-----------------
Confidence 4567899999999866433 56677777665442 23478899999999988655
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
++.++..++..+...|++++|+..|+++++.++. +..++..+..++...|++++|...+++..+.. |.++..+..+
T Consensus 337 --~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~ 412 (553)
T PRK12370 337 --NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITK 412 (553)
T ss_pred --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHH
Confidence 6678889999999999999999999999999854 77788899999999999999999999999865 2233344445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
+..+...|++++|+..++++.+...+.+...+..+..++...|++++|...++++.... +.+....+.+...|+..|
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--
Confidence 55577789999999999998875422245567778888999999999999999976653 445556677777788888
Q ss_pred hHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 327 EKAECVLLHMEKQG-VVPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 327 ~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
++|...++.+.+.. ..+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 490 ~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 490 ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 48888787776531 11111112 44445566777777666 666654
No 70
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=6.4e-07 Score=96.24 Aligned_cols=125 Identities=12% Similarity=0.055 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh-----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY-----TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
+..+.+.+.+.|-...|++.|.++... +..+. .-..++ .|.-.-.++.+++.++.|+..++..|..+...+.
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 566778888888888888777765531 11111 011222 2334456788888999998888777777777666
Q ss_pred HHHHhcCChhHHHHHHHHHHHC-----------CCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 003315 283 EGLCMNGMLDLGYELLLKWEEA-----------DIPLSAFAYTVVIRWFCDQNKLEKAECVLLH 335 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 335 (831)
.-|+.+=-.+...++|+..... ++..|+.+....|.+.|+.|++.+.+++.++
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 6666665556666776665542 3466788888899999999999988887655
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=9.9e-09 Score=104.00 Aligned_cols=169 Identities=10% Similarity=0.153 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHhhhCCCCC-hHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 003315 533 GGRVEEAEAFLDGLKGKCLEN-YSAMINGYC--KTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLF 609 (831)
Q Consensus 533 ~g~~~~a~~~~~~~~~~~~~~-~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 609 (831)
.+.-+.+.++...+....|.. +..++.... +...+.++.+++....+..+.-...+...+++.....|+++.|.+++
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344455555555555555444 333332222 22356777777777776655544556667777888889999999988
Q ss_pred H--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHH----HHHHcCCHHHH
Q 003315 610 K--------TMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK--GLTPHLVTYTMMIH----GYCKINCLREA 675 (831)
Q Consensus 610 ~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~----~~~~~g~~~~A 675 (831)
. .+.+.+..| .+...+...+.+.++.+.|..+++++++. ...+......+++. .-.+.|+.++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 8 444444444 44455677788888888888888887752 12233344444443 33477999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 003315 676 RDVFNDMKQRGITPDVVTYTVLFDAHSKI 704 (831)
Q Consensus 676 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 704 (831)
..+++++.+. -.+|..+..-++.+++..
T Consensus 478 ~s~leel~k~-n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 478 SSLLEELVKF-NPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHHHh-CCchHHHHHHHHHHHHhc
Confidence 9999999985 356888888899998873
No 72
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=2.9e-07 Score=99.03 Aligned_cols=245 Identities=13% Similarity=-0.023 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 003315 432 EKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYM 511 (831)
Q Consensus 432 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 511 (831)
..|+..++...+..- .+...|+.|.-. ...|++.-|...|-+-....+. ...+|..+.-.+.++.+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhh
Confidence 356666665544321 145555555433 4446666666666655544332 5556666666667777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-----CC---hHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 003315 512 KRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL-----EN---YSAMINGYCKTGHTKEAFQLFMRLSNQ--- 580 (831)
Q Consensus 512 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 580 (831)
.... |.+...+..........|+.-++..+|..-...+. .. |-.-......+|++++-+..-+++...
T Consensus 877 qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 6542 33333333333333445666666666654221111 11 222222233445554444433333211
Q ss_pred ------CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHH
Q 003315 581 ------GVLVKKSSCNKLITNLLILRDNNNALKLFKTMITL-NAEPSKSMYD----KLIGALCQAEEMEQAQLVFNVLVD 649 (831)
Q Consensus 581 ------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~ 649 (831)
+.+-+...|...+...-+++.+..|.+...+.+.. ..+-+...|+ .+...++..|+++.|..-+.....
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence 11224445555555555556666655555444321 0112333333 234445556666655544332211
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 650 KGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 650 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
. .+...-..-+.. .-.|+++++.+.|++...
T Consensus 1036 e---vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLs 1066 (1238)
T KOG1127|consen 1036 E---VDEDIRGTDLTL-FFKNDFFSSLEFFEQALS 1066 (1238)
T ss_pred h---HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhh
Confidence 0 011111111111 335677777777777764
No 73
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=1.4e-07 Score=101.34 Aligned_cols=562 Identities=11% Similarity=-0.011 Sum_probs=319.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC--hhhHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN--EYTYVIV 246 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l 246 (831)
...+|..|+..|...-+...|...|+++-+.+.. +..+...+...|++..++++|..+.-...+.. +.- ...|.-.
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQR 568 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhc
Confidence 3457888999998888888999999999888744 88888888999999999999988843333221 111 1233334
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
.-.|.+.++...|+.-|+...... +.|...|..+..+|...|++..|.++|.++...+ |.+.....-..-..+..|++
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhH
Confidence 455778888999999999888764 4577789999999999999999999998888765 44555555566677888999
Q ss_pred hHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHHhc
Q 003315 327 EKAECVLLHMEKQG------VVPDVYAYSALISGYCKFGKINKALLLHHEMTS-------KGIKTNCGVLSVILKGLCQK 393 (831)
Q Consensus 327 ~~A~~~~~~~~~~~------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~ 393 (831)
.+|...+....... -..-..++..+...+.-.|-..+|.++++..++ .....+...+..+..+
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda---- 722 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA---- 722 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH----
Confidence 99999888876531 111222333333334444444455555444332 1111122222222222
Q ss_pred CChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCH---H---HHHHHHHHHHhCCCCCChhhHHHHHHHHHc----c
Q 003315 394 GMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEV---E---KAMILFKEMKDRQIVPDVVNYTTMICGYCL----Q 463 (831)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 463 (831)
..+|-+.. .. .|+......+..-....+.. | -+.+.+-.-.+ ...+..+|..++..|.+ .
T Consensus 723 ------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 723 ------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred ------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHc
Confidence 12222222 11 22332222222212222221 1 11111111111 11234455555544433 1
Q ss_pred ----CChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003315 464 ----GKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEA 539 (831)
Q Consensus 464 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 539 (831)
.+...|+..+.+..+..- -+..+|+ .+......|++.-+...|-+-.... +....+|..+...+.+..+++.|
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~a-nn~~~Wn-aLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLCA-NNEGLWN-ALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHhh-ccHHHHH-HHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHh
Confidence 223467788887766432 2444555 4445566677777766666655543 55666777777778889999999
Q ss_pred HHHHHHhhhCCCCChHH-HHHHH--HhcCCHHHHHHHHHHH--Hh--CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 003315 540 EAFLDGLKGKCLENYSA-MINGY--CKTGHTKEAFQLFMRL--SN--QGVLVKKSSCNKLITNLLILRDNNNALKLFKTM 612 (831)
Q Consensus 540 ~~~~~~~~~~~~~~~~~-l~~~~--~~~g~~~~A~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 612 (831)
...|......+|.+... ++.++ ...|+.-++..+|..- .. .|-.++..-+..........|+.++-+...+.+
T Consensus 870 ~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred hHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 99999999999887322 34444 4678888888888762 22 122223333333333344455555544333333
Q ss_pred HhC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHH----HHHHHHHcCCHHHHHHH
Q 003315 613 ITL---------NAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK-GLTPHLVTYTM----MIHGYCKINCLREARDV 678 (831)
Q Consensus 613 ~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~----l~~~~~~~g~~~~A~~~ 678 (831)
... +.+.+...|...+...-+.+.+..|.....+.... ..+-|...||. +.+.++..|.++.|..-
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 221 22344556666666666677777766666554320 01224455553 34455566777766544
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHHhcCC
Q 003315 679 FNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKE-MGIRPDV-ISYTVLIAKLCNTQN 756 (831)
Q Consensus 679 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~-~~~~p~~-~~~~~l~~~~~~~g~ 756 (831)
+...... .+...-..-+..+. .+++.++.+.|++... .+-..+. +....++.+....+.
T Consensus 1030 ~~~~~~e---vdEdi~gt~l~lFf----------------kndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~ 1090 (1238)
T KOG1127|consen 1030 SWKEWME---VDEDIRGTDLTLFF----------------KNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQ 1090 (1238)
T ss_pred hcccchh---HHHHHhhhhHHHHH----------------HhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhccc
Confidence 4322110 01111111111111 4667888888888764 2223333 355667777778888
Q ss_pred hHHHHHHHHHHHHC
Q 003315 757 LEDGITVFNEISDR 770 (831)
Q Consensus 757 ~~~A~~~~~~~~~~ 770 (831)
-+.|...+-+....
T Consensus 1091 k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1091 KNDAQFLLFEVKSL 1104 (1238)
T ss_pred chHHHHHHHHHHHh
Confidence 88888777766653
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=3.6e-10 Score=111.03 Aligned_cols=201 Identities=11% Similarity=0.062 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+..++..+...|++++|+..++++++..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 4667888999999999999999999998887643 67778888899999999999999999988764 446677888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGV-TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
.+...|++++|.+.++++.+... ......+..+..++...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 88999999999999999886422 2234466667778888888888888888888764 455677778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
+|...+++..+.. ..+...+..++..+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888887762 33556666777777788888888887776654
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.7e-08 Score=100.88 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHhhccccC
Q 003315 636 EMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFN--------DMKQRGITPDVVTYTVLFDAHSKINLK 707 (831)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~ll~~~~~~~~~ 707 (831)
....|..++...-+....-...+.-.++.....+|+++.|++++. ...+.+..|-.+.+ ++..+.+.+..
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a--iv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA--IVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH--HHHHHHhccCC
Confidence 467777777777765333234555667777788999999999998 66666666665544 33333332210
Q ss_pred CCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003315 708 GSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDV-ISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGY 786 (831)
Q Consensus 708 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~ 786 (831)
+ + ...-..+|...|..-... .+.. ..+.-++..-.+.|+-++|..+++++.+. .++|..+...++.+|
T Consensus 434 ~--~------a~~vl~~Ai~~~~~~~t~--s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 434 D--S------ASAVLDSAIKWWRKQQTG--SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAY 502 (652)
T ss_pred c--c------HHHHHHHHHHHHHHhccc--chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHH
Confidence 0 0 011234555555543211 1211 24444455556889999999999999986 567899999999999
Q ss_pred HhcCCHHHHHHHHHHH
Q 003315 787 LAKGDLDRAIALVDEM 802 (831)
Q Consensus 787 ~~~g~~~~A~~~~~~~ 802 (831)
.+. |.+.|..+-+.+
T Consensus 503 ~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 503 ARL-DPEKAESLSKKL 517 (652)
T ss_pred Hhc-CHHHHHHHhhcC
Confidence 988 789998876654
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=8.4e-08 Score=101.71 Aligned_cols=297 Identities=16% Similarity=0.156 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH-HHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV-IVIKAL 250 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~ 250 (831)
+.......+...|++++|++.+...... +..........+..+.+.|+.++|..+|..+++.+ |+...|. .+..+.
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 3345556678899999999999875554 33356667788899999999999999999999876 5555544 444444
Q ss_pred Hh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 003315 251 CK-----KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGML-DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQN 324 (831)
Q Consensus 251 ~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 324 (831)
.- ..+.+...++|+++.+. -|.......+.-.+.....+ ..+..++..+...|+|+ +|..+-..|....
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPE 157 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChh
Confidence 22 23567788888888765 35444443333222222233 34556667777777553 5666666666555
Q ss_pred CHhHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 003315 325 KLEKAECVLLHMEKQ----G----------VVPDVY--AYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILK 388 (831)
Q Consensus 325 ~~~~A~~~~~~~~~~----~----------~~p~~~--~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 388 (831)
+.+-..+++...... + -.|... ++..+.+.|...|++++|++.+++.++..+. ....|..-.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kar 236 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 555555666655432 1 123332 4455677788889999999999888876422 3556666777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh------H--HHHHHHH
Q 003315 389 GLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVN------Y--TTMICGY 460 (831)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~--~~li~~~ 460 (831)
.+-..|++.+|.+.++........ |...-+..+..+.+.|++++|.+++......+..|-... | .....+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 777888888888888887776543 556666667777788888888888877765543222211 1 2334567
Q ss_pred HccCChhhHHHHHHHHHH
Q 003315 461 CLQGKLGDALDLFKEMKE 478 (831)
Q Consensus 461 ~~~g~~~~A~~~~~~~~~ 478 (831)
.+.|++..|++.|....+
T Consensus 316 ~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777887777776665543
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=8.7e-10 Score=108.30 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLNEYTYVIVIKAL 250 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~ 250 (831)
++..++..+...|++++|+..++++.+..+. +...+..+...+...|++++|...|++..+... +.....+..+...+
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3444445555555555555555555444322 333444445555555555555555555443211 11223344445555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHH
Q 003315 251 CKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAE 330 (831)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 330 (831)
...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..++..+...|+.++|.
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 55556666666655555432 223344555555555666666666666555554 2334445555556666666666666
Q ss_pred HHHHHHHH
Q 003315 331 CVLLHMEK 338 (831)
Q Consensus 331 ~~~~~~~~ 338 (831)
.+.+.+..
T Consensus 224 ~~~~~~~~ 231 (234)
T TIGR02521 224 RYGAQLQK 231 (234)
T ss_pred HHHHHHHh
Confidence 66555543
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.4e-10 Score=108.00 Aligned_cols=230 Identities=13% Similarity=0.086 Sum_probs=186.0
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 003315 454 TTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMG 533 (831)
Q Consensus 454 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 533 (831)
+.+.++|.+.|.+.+|.+-|+..++. .|-+.||..+-.+|.+.+++..|+.++.+-++. ++-++....-....+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 35667788888888888888877765 355667777888888888888888888887765 355555556666677778
Q ss_pred CCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 003315 534 GRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFK 610 (831)
Q Consensus 534 g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 610 (831)
++.++|.++++...+.++.+ ...+...|.-.++++-|+.+++++.+.|.. ++..+..++-+|...+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 88888888888888776655 444567778888999999999999999987 88899999999999999999999999
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003315 611 TMITLNAEPS--KSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGIT 688 (831)
Q Consensus 611 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 688 (831)
++...-..|+ ..+|-.+..+....|++..|.+.|+-++..+.. +...+|.|.-.-.+.|++++|..+++.... +.
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~ 459 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS--VM 459 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hC
Confidence 9987765565 346777888888999999999999999987555 678899999988999999999999999876 45
Q ss_pred CC
Q 003315 689 PD 690 (831)
Q Consensus 689 p~ 690 (831)
|+
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 55
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=1.3e-07 Score=100.37 Aligned_cols=302 Identities=15% Similarity=0.120 Sum_probs=165.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNA-FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ--- 323 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 323 (831)
..+...|++++|++.+++-... .+|. .........+.+.|+.++|..++..+++.+ |.+..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 4466778888888887665443 3343 344555667777777777777777777775 44555555555555222
Q ss_pred --CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 003315 324 --NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKIN-KALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATI 400 (831)
Q Consensus 324 --g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 400 (831)
.+.+...++++++...- |.......+.-.+.....+. .+...+..++.+|+++ ++..+-..|.......-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 24566666777666652 33333333332233222232 3344555555666542 2222222222222222111
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHccCChhhHHHHHHHHHH
Q 003315 401 KQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNY--TTMICGYCLQGKLGDALDLFKEMKE 478 (831)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~ 478 (831)
+++...... +...+.+.... ....-+|+...| .-+.+.|-..|++++|++.+++.++
T Consensus 164 ~l~~~~~~~---------------l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 164 SLVEEYVNS---------------LESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred HHHHHHHHh---------------hcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 222111110 00000000000 000112333333 4445667777888888888887777
Q ss_pred cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC-----
Q 003315 479 MGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN----- 553 (831)
Q Consensus 479 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----- 553 (831)
..+. .+..|..-...+-..|++++|.+.++...+.. .-|-.+-+..+..+.+.|++++|++.+......+...
T Consensus 223 htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 223 HTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred cCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 6433 35667777777778888888888888877664 4455556666667778888888888777776554322
Q ss_pred -----h--HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 554 -----Y--SAMINGYCKTGHTKEAFQLFMRLSNQ 580 (831)
Q Consensus 554 -----~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (831)
| ...+.+|.+.|++..|+..|..+.+.
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1 23466777888888887777665443
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=5.7e-10 Score=104.10 Aligned_cols=230 Identities=10% Similarity=0.009 Sum_probs=173.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
..++++|.+.|++.+|...++..++. .|.+.+|..+..+|.+..+.+.|+.+|.+.++. .|-|+.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 47899999999999999999998876 457778888999999999999999999998875 344555556777888889
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 003315 254 GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVL 333 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 333 (831)
++.++|.++|+...+.. +.++.....+...|.-.++++.|+.+|+++++.| ..++..|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988764 4566666777777888888888888888888888 457788888888888888888888888
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003315 334 LHMEKQGVVPD--VYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGF 411 (831)
Q Consensus 334 ~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 411 (831)
++....--.|+ ..+|-.+..+....|++..|.+.|+-.+..+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~---------------------------------- 427 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ---------------------------------- 427 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc----------------------------------
Confidence 87765433333 345666666666677777777777766654322
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 412 FLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR 444 (831)
Q Consensus 412 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (831)
+...+|.|.-.-.+.|++++|..++....+.
T Consensus 428 --h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 428 --HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred --hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 3455556666666777777777777766553
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=1.5e-09 Score=109.10 Aligned_cols=219 Identities=10% Similarity=0.008 Sum_probs=153.2
Q ss_pred CChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHH
Q 003315 96 KEPKIALSFFEQLKRSG---FSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRL 172 (831)
Q Consensus 96 ~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (831)
+..+.++.-+.++.... ....+..|...+.++...|++++|...|.+.++..|+ ++.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-------------------~~~a 100 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-------------------MADA 100 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-------------------CHHH
Confidence 35666777777776421 1223566888888899999999999999998887554 5678
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
|..++..+...|++++|+..|+++++.++. +..++..++.++...|++++|.+.|+...+.. |+.............
T Consensus 101 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~ 177 (296)
T PRK11189 101 YNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAES 177 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHc
Confidence 899999999999999999999999988755 67778888899999999999999999988754 433222222223345
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CC---CCChhhHHHHHHHHHhcCCH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA---DI---PLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~ 326 (831)
.+++++|.+.|++..... .|+...+ .......|+..++ +.++.+.+. .. +....+|..+...+.+.|++
T Consensus 178 ~~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~ 252 (296)
T PRK11189 178 KLDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL 252 (296)
T ss_pred cCCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 678999999997765432 3332222 2223345555544 344444432 10 12345788888888888888
Q ss_pred hHHHHHHHHHHHCCC
Q 003315 327 EKAECVLLHMEKQGV 341 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~ 341 (831)
++|...|++..+.++
T Consensus 253 ~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 253 DEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888888888887643
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.29 E-value=3.5e-06 Score=87.63 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=71.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
..+.+-...++|.+|+.+++.+..... -...|..+..-|...|+++.|.++|.+.- .++-.|..|.+.|
T Consensus 737 kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 445555667777778877777665532 22346667777777888888887775532 2344566777888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELL 298 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (831)
+|+.|.++-++.. |.......|..-..-+-+.|++.+|.++|
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 8888877766543 33444555666556666777777766655
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.28 E-value=2.6e-06 Score=88.52 Aligned_cols=216 Identities=16% Similarity=0.173 Sum_probs=109.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHH
Q 003315 423 DSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQ 502 (831)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 502 (831)
..+...|+++.|+..|-+... ....+.+....+.+.+|+.+++.+..... ...-|..+.+.|...|+++
T Consensus 714 ~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH
Confidence 334445555555555543321 12233444555666666666666655422 2233455556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 503 KAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN--YSAMINGYCKTGHTKEAFQLFMRLSNQ 580 (831)
Q Consensus 503 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (831)
.|.++|.+.- .++-.|.+|.+.|+++.|.++-.+.......+ |-+-..-+-++|++.+|.+++-.+
T Consensus 783 ~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti--- 850 (1636)
T KOG3616|consen 783 IAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITI--- 850 (1636)
T ss_pred HHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---
Confidence 6666665431 23445556666666666666655544332221 333333444556666665554221
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 003315 581 GVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYT 660 (831)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 660 (831)
..-...+..|-+.|..++.+++.++-.. ..-..|-..+..-|-..|++..|..-|-+..+ |.
T Consensus 851 ------~~p~~aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~k 912 (1636)
T KOG3616|consen 851 ------GEPDKAIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FK 912 (1636)
T ss_pred ------cCchHHHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HH
Confidence 1112334445555555555555543321 11123444555666667777777666654432 33
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 003315 661 MMIHGYCKINCLREARDVF 679 (831)
Q Consensus 661 ~l~~~~~~~g~~~~A~~~~ 679 (831)
+-++.|...+.+++|.++-
T Consensus 913 aavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHH
Confidence 4455555566666655543
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6.5e-07 Score=86.94 Aligned_cols=268 Identities=12% Similarity=-0.015 Sum_probs=159.9
Q ss_pred cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHH
Q 003315 413 LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLA 492 (831)
Q Consensus 413 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 492 (831)
-|+.....+.+.+...|+.++|+..|++....+.. +..........+.+.|+.++...+...+.... +.....|..-+
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 35555566666666666666666666665543110 11111112223445566666665555554321 11222233333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC---CChHHHHHHHHhcCCHHH
Q 003315 493 GAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL---ENYSAMINGYCKTGHTKE 569 (831)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~ 569 (831)
..+...++++.|+.+-++.++.+ +.+...+-.-...+...|+.++|.-.|+.....-| +.|.-|+.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 33445566666666666665543 33334444444455566666666666666555433 336666777777777666
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 570 AFQLFMRLSNQGVLVKKSSCNKLI-TNLL-ILRDNNNALKLFKTMITLNAEPS-KSMYDKLIGALCQAEEMEQAQLVFNV 646 (831)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 646 (831)
|.-+-+.....-. .+..++..++ .++. ...--++|..++++..+. .|+ ....+.+.+.+...|+.+.+..+++.
T Consensus 387 A~~~An~~~~~~~-~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRLFQ-NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHhh-cchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 6655544433211 1344444442 2222 223457888888888765 454 33456677788889999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003315 647 LVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPD 690 (831)
Q Consensus 647 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 690 (831)
.+.. .||....+.|.+.+...+.+++|++.|...+. +.|+
T Consensus 464 ~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 464 HLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred HHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 8874 78999999999999999999999999998886 4554
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=2e-06 Score=90.67 Aligned_cols=508 Identities=16% Similarity=0.146 Sum_probs=284.6
Q ss_pred ChhhHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-C-------CCC
Q 003315 239 NEYTYVIVIK--ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA-D-------IPL 308 (831)
Q Consensus 239 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~~~ 308 (831)
|..|-..+++ .|...|+.+.|.+-.+-++ ....|..+.+.|.+..+.|-|.-.+..|... | .+.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5566666664 3556788888887776654 3456777888888777777666555443321 0 011
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 003315 309 SAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILK 388 (831)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 388 (831)
+...-...+-.....|-+++|+.++++-++ |..|=..|...|.|++|.++-+.--.... ..||.....
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 112222334445567888899998888775 33455667778999999887665322222 346666677
Q ss_pred HHHhcCChHHHHHHHHHHHHC----------CC---------CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 389 GLCQKGMASATIKQFLEFKDM----------GF---------FLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPD 449 (831)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~----------~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (831)
-+...++.+.|++.|++.... .+ ..|...|.--...+...|+.+.|+.+|...++
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 777788888888887753211 11 12334444445555667788888887776653
Q ss_pred hhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHH
Q 003315 450 VVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHG--------LEPNFV 521 (831)
Q Consensus 450 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~ 521 (831)
|-.+++..|-+|+.++|-++-++- -|......+.+.|-..|++.+|...|.++.... ...+..
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDR 1011 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 456777788889999988887653 255666678888999999999988888765310 001111
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHH--------H--HhCCCCCCcccHHH
Q 003315 522 THNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMR--------L--SNQGVLVKKSSCNK 591 (831)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~--~~~~~~~~~~~~~~ 591 (831)
..+.. ......+.-.|-++|++. +......+..|-+.|.+.+|+++--+ + ...+...|+..++.
T Consensus 1012 L~nla--l~s~~~d~v~aArYyEe~----g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1012 LANLA--LMSGGSDLVSAARYYEEL----GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHHH--hhcCchhHHHHHHHHHHc----chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 11110 011112222333333332 12233345566677777777665221 1 12234446666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----------CCC----------------CCCH----HHHHHHHHHHHhcCCHHHHH
Q 003315 592 LITNLLILRDNNNALKLFKTMIT----------LNA----------------EPSK----SMYDKLIGALCQAEEMEQAQ 641 (831)
Q Consensus 592 l~~~~~~~~~~~~a~~~~~~~~~----------~~~----------------~p~~----~~~~~l~~~~~~~g~~~~A~ 641 (831)
....++...++++|..++-.+.+ .|+ .|+. .+...+.+.|.++|.+..|.
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 77777777777777766644332 111 1222 25556778889999999888
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH----------------HHHHHHHHHHCCCCCC------HHHH-----
Q 003315 642 LVFNVLVDKGLTPHLVTYTMMIHGYCKINCLRE----------------ARDVFNDMKQRGITPD------VVTY----- 694 (831)
Q Consensus 642 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----------------A~~~~~~m~~~~~~p~------~~~~----- 694 (831)
+-|.++-.+ -.-++++.+.|+.++ |..+++.+ ....| +.||
T Consensus 1166 KKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtl---DWq~~pq~mK~I~tFYTKgq 1233 (1416)
T KOG3617|consen 1166 KKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTL---DWQDNPQTMKDIETFYTKGQ 1233 (1416)
T ss_pred HHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhc---ccccChHHHhhhHhhhhcch
Confidence 877765432 123455555555444 11222111 11111 2221
Q ss_pred --HH---HHHHhhccccCCCCCCCchh----hcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----------c
Q 003315 695 --TV---LFDAHSKINLKGSSSSPDAL----QCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCN-----------T 754 (831)
Q Consensus 695 --~~---ll~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-----------~ 754 (831)
.. .-..|+.+. ++.+ +..+..++|-+-+.+....+ .....|+.|=.-..+ .
T Consensus 1234 afd~LanFY~~cAqiE-------iee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~ 1304 (1416)
T KOG3617|consen 1234 AFDHLANFYKSCAQIE-------IEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMK 1304 (1416)
T ss_pred hHHHHHHHHHHHHHhh-------HHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 112222211 0111 12233444555554444322 111233333222221 1
Q ss_pred CChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003315 755 QNLEDGITVFNEISDRGLEPDT----VTYTALLCGYLAKGDLDRAIALVDEMSVKG 806 (831)
Q Consensus 755 g~~~~A~~~~~~~~~~g~~pd~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 806 (831)
.+..+.++-...|.+...-||+ .+|.-|+..+....++..|-+.+++|..+-
T Consensus 1305 eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1305 EDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 2445555556666655444443 467788899999999999999999999863
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=1.8e-08 Score=101.30 Aligned_cols=199 Identities=16% Similarity=0.082 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
.+..|..++..|...|++++|+..|+++++.++. +..+++.+...+...|++++|...|++.++.. +.+..+|..+..
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~ 140 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGI 140 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567889999999999999999999999998755 78899999999999999999999999999864 345678888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
.+...|++++|++.|++..+. .|+..........+...++.++|...+++..... +++...+ .+ .....|+...
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCH
Confidence 899999999999999999886 4543322222333456788999999997766543 3332221 22 2334555554
Q ss_pred HHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003315 329 AECVLLHMEKQ---GV--V-PDVYAYSALISGYCKFGKINKALLLHHEMTSKGI 376 (831)
Q Consensus 329 A~~~~~~~~~~---~~--~-p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 376 (831)
+ +.++.+.+. .+ . .....|..+...+.+.|++++|+..|++....++
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4 355555432 11 1 1335788889999999999999999999987654
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=1.3e-08 Score=91.04 Aligned_cols=201 Identities=15% Similarity=0.058 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
..+...|+-.|...|++..|..-++++++.++. +..++..+...|.+.|+.+.|.+.|+..++.. +.+....|.....
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH
Confidence 346678899999999999999999999999855 78889999999999999999999999999865 4567788889999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGVT-PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
+|..|++++|...|+++...-.- .-..+|..+.-+-.+.|+++.|...|++.++.+ +..+.+...+.+...+.|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999875222 234578888888889999999999999999886 5667788889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 329 AECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 329 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
|...++.....+. ++..+.-..|..--..|+.+.+.+.=.++...
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999988766 68888888888888889988887776666553
No 88
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=5.7e-11 Score=82.48 Aligned_cols=50 Identities=46% Similarity=0.883 Sum_probs=45.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003315 654 PHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSK 703 (831)
Q Consensus 654 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 703 (831)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998864
No 89
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=7.4e-11 Score=81.91 Aligned_cols=49 Identities=37% Similarity=0.853 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003315 739 PDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYL 787 (831)
Q Consensus 739 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~ 787 (831)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666654
No 90
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=9.3e-09 Score=107.33 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=114.4
Q ss_pred CChHHHHHHHHhccCChhHHHHHHHHHHhC-----CCC-CCHHHH-HHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhH
Q 003315 82 LNTREVVEKLYSLRKEPKIALSFFEQLKRS-----GFS-HNLCTY-AAIVRILCCCGWQKKLESMLLELVRKKTDANFEA 154 (831)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~-----~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 154 (831)
......+...|..+|+++.|...|.++.+. |.. +...+. ..++..|...+++.+|..+|.+++.-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------- 270 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------- 270 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 344555678888999999999999998732 322 222222 33677888999999999999987654
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-----C-CcChh-hHHHHHHHHHHcCChhHHHHH
Q 003315 155 TDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRG-----F-VWSIC-SCNYFMNQLVECGKVDMALAV 227 (831)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~-~~~~l~~~~~~~~~~~~A~~~ 227 (831)
++...+...+....++..|+.+|.+.|++++|...++++.+.- . .+.+. .++.+...+...+++++|..+
T Consensus 271 ---~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 271 ---REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred ---HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4455566667778899999999999999999999988876421 0 11111 233444555556666666666
Q ss_pred HHHHHhcC---CCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 228 YQHLKRLG---LSLN----EYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 228 ~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
+....+.- +.++ ..+++.|...|.+.|++++|.++|++++.
T Consensus 348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 65543210 1111 23555666666666666666666665543
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=1.7e-08 Score=105.49 Aligned_cols=208 Identities=18% Similarity=0.087 Sum_probs=111.6
Q ss_pred CCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----C-CCcChhh-HHHHHHHHHHcCChhHHHHHHHHHHhc--
Q 003315 164 EGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR-----G-FVWSICS-CNYFMNQLVECGKVDMALAVYQHLKRL-- 234 (831)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 234 (831)
.+.+....+...++..|...|+++.|...+.++++. | ..|.+.+ .+.+...|...+++++|..+|++++..
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 344555566667888888888888888888777654 1 0122322 233566667777777777777766542
Q ss_pred ---CC-CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHH
Q 003315 235 ---GL-SL-NEYTYVIVIKALCKKGSMQEAVEVFLEMEKA-----GV-TPNAF-AYSTCIEGLCMNGMLDLGYELLLKWE 302 (831)
Q Consensus 235 ---~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (831)
|- .| -..+++.|...|.+.|++++|...++++.+. |. .|.+. .++.++..++..+++++|..+++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 10 01 1235566666677777777766666665431 11 11221 34444555666666666666665544
Q ss_pred HCC---CCC----ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC----C--CC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 003315 303 EAD---IPL----SAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG----V--VP-DVYAYSALISGYCKFGKINKALLLH 368 (831)
Q Consensus 303 ~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~--~p-~~~~~~~li~~~~~~~~~~~A~~~~ 368 (831)
+.- +.+ -..+++.|...|...|++++|++++++.+... . .+ ....++.|...|.+.+++.+|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 320 111 13455556666666666666666665554320 0 11 1223444555555555555555555
Q ss_pred HHH
Q 003315 369 HEM 371 (831)
Q Consensus 369 ~~~ 371 (831)
.+.
T Consensus 433 ~~~ 435 (508)
T KOG1840|consen 433 EEA 435 (508)
T ss_pred HHH
Confidence 443
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=5.3e-08 Score=87.22 Aligned_cols=194 Identities=11% Similarity=-0.061 Sum_probs=125.2
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW 203 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 203 (831)
+-.|...|+...|..-++++++.+|. +..++..++..|.+.|..+.|.+.|+++++..+.
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs-------------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~- 101 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPS-------------------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN- 101 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc-------------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-
Confidence 33445555566666666666665443 4456667777777777777777777777776644
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLG-LSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
+..+.|.....++..|++++|...|++..... ...-..+|..+.-...+.|+.+.|...|++.++.. +....+...+.
T Consensus 102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a 180 (250)
T COG3063 102 NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELA 180 (250)
T ss_pred ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHH
Confidence 66667777777777777777777777766531 11123466666666667777777777777777653 22344556666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 283 EGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
....+.|++..|...++.....+ +++....-..|+.--+.|+.+.+.+.=..+.+.
T Consensus 181 ~~~~~~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 181 RLHYKAGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHhcccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777777777777776665 366666666677777777777666665555554
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.1e-07 Score=91.81 Aligned_cols=423 Identities=15% Similarity=0.080 Sum_probs=223.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCC
Q 003315 177 IKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN-EYTYVIVIKALCKKGS 255 (831)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 255 (831)
+.+.+..|+++.|+..|..++..++. |...|..-..+|...|++++|++--.+-++. .|+ +..|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 45566788888888888888888755 7777888888888888888888776665553 344 4578888888888888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHhHHHHHHH
Q 003315 256 MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQN-KLEKAECVLL 334 (831)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~ 334 (831)
+++|+..|.+-++.. +.+...++-+..++. .+.+. +. .-.++..+..+..-=.... -.+.+.....
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 888888888877763 334555665655551 11110 11 1112233322221111111 0112222222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHhCC-------CCCCHhhHHHHHHHHHhcCChHHHHHH
Q 003315 335 HMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHE-----MTSKG-------IKTNCGVLSVILKGLCQKGMASATIKQ 402 (831)
Q Consensus 335 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~-----~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~ 402 (831)
+....++. +. ..|.+-.++..|...+.. +...+ ..|... ........++..+-.+.
T Consensus 153 ~~~~~~p~-~l-------~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~d~~ee~~~ 220 (539)
T KOG0548|consen 153 EIIQKNPT-SL-------KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQ----EHNGFPIIEDNTEERRV 220 (539)
T ss_pred HHhhcCcH-hh-------hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccc----cCCCCCccchhHHHHHH
Confidence 22222111 11 111111111111111110 00011 111100 00000000000000000
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCC
Q 003315 403 FLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHK 482 (831)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 482 (831)
..-..-...+++...+..+++.|++.+....... .+..-++....+|...|.+.+....-....+.|-.
T Consensus 221 ---------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre 289 (539)
T KOG0548|consen 221 ---------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE 289 (539)
T ss_pred ---------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence 0011223456666777777888888887776653 35555666666777777777766666665554432
Q ss_pred CCcchHHH-------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC--
Q 003315 483 PDIITYNV-------LAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN-- 553 (831)
Q Consensus 483 ~~~~~~~~-------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-- 553 (831)
...-|+. +..++.+.++++.++..+.+.+.....|+. ..+....+++.+..+...-.+|+.
T Consensus 290 -~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~ 359 (539)
T KOG0548|consen 290 -LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAE 359 (539)
T ss_pred -HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHH
Confidence 2222222 333555566777888888776654333332 222333344444443333333333
Q ss_pred -hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 554 -YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALC 632 (831)
Q Consensus 554 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 632 (831)
...-+..+.+.|++..|+..|.+++...+. |...|....-+|.+++.+..|+.-.+..++.+ ++....|.-=+.++.
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHH
Confidence 222366677777888888888887777654 66777777777777777777777777666653 222333444445555
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 003315 633 QAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 633 ~~g~~~~A~~~~~~~~~~ 650 (831)
...+++.|.+.|++.++.
T Consensus 438 ~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 566777777777777765
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.13 E-value=6.7e-07 Score=84.63 Aligned_cols=210 Identities=11% Similarity=-0.007 Sum_probs=113.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCC
Q 003315 87 VVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGS 166 (831)
Q Consensus 87 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (831)
-++.-...+|+...|+..|..+..-++. +-.++.+-+..|+..|+.+.|+.=+..+++..|+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD----------------- 104 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD----------------- 104 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc-----------------
Confidence 3444445567777777777776654211 3333444455566667766666666666666433
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
...+-..-+..+.+.|.+++|..-|+++++..+. ..+ ...+..+.--.++-+. ....
T Consensus 105 --F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s--~~~---~~eaqskl~~~~e~~~----------------l~~q 161 (504)
T KOG0624|consen 105 --FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS--NGL---VLEAQSKLALIQEHWV----------------LVQQ 161 (504)
T ss_pred --HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC--cch---hHHHHHHHHhHHHHHH----------------HHHH
Confidence 1222334444556666666666666666665422 110 0111111110111111 1122
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
+..+...|+...|++....+++.. +-|...+..-..+|...|++..|+.-+....+.. ..+..++.-+-..+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhH
Confidence 233445677777777777776642 3455566666666777777777766666655543 44555666666666666776
Q ss_pred hHHHHHHHHHHHC
Q 003315 327 EKAECVLLHMEKQ 339 (831)
Q Consensus 327 ~~A~~~~~~~~~~ 339 (831)
+.++...++..+.
T Consensus 240 ~~sL~~iRECLKl 252 (504)
T KOG0624|consen 240 ENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHHHHcc
Confidence 6666666666654
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=3.5e-07 Score=96.14 Aligned_cols=201 Identities=13% Similarity=0.001 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-cCh-hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV-WSI-CSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
.+.++..++..+...|+.+++...+.+..+.... .+. .........+...|++++|.+.+++..+.. |.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 4557778888888889999988888887665432 121 122223445677899999999999988753 344444442
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 003315 247 IKALCK----KGSMQEAVEVFLEMEKAGVTPN-AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFC 321 (831)
Q Consensus 247 ~~~~~~----~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (831)
...+.. .+....+.+.++.. ....|+ ......+...+...|++++|...+++..+.. |.+...+..+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 222222 45555555555441 122333 3344566678889999999999999999886 667788888999999
Q ss_pred hcCCHhHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 322 DQNKLEKAECVLLHMEKQGVV-PDV--YAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~-p~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
..|++++|...+++....... |+. ..|..+...+...|++++|...+++....
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999999999999988875321 232 34557888899999999999999998643
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.12 E-value=8e-07 Score=84.13 Aligned_cols=333 Identities=12% Similarity=0.033 Sum_probs=194.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh-hHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY-TYVIVI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~ 247 (831)
+..-...+++.+...|++.+|+..|-.+++.++. +-.++-.-...|...|+..-|+.-+.++++. +||-. .-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 4445568999999999999999999999887543 4445555667888999999999999999984 56643 223334
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
..+.++|.+++|..-|+..++.. |+..+- ..+..+.-..++-. .....+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchh
Confidence 56789999999999999999873 432111 11111111111111 1122333445566777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFK 407 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 407 (831)
.|......+++-.+- |...|..-..+|...|++..|+.-++...+.... +..++..+-..+...|+.+.++...++.+
T Consensus 173 ~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 777777777665333 6666666667777777777776666555443222 34445555566666666666666666655
Q ss_pred HCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcch
Q 003315 408 DMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIIT 487 (831)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 487 (831)
+.++. ...+...|+.+++. .... .-+....+.++|.++++..+...+..+......
T Consensus 251 Kldpd------------------HK~Cf~~YKklkKv-----~K~l-es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 251 KLDPD------------------HKLCFPFYKKLKKV-----VKSL-ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred ccCcc------------------hhhHHHHHHHHHHH-----HHHH-HHHHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 54321 11122222222210 0000 001123455666666666666666544322222
Q ss_pred H---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 003315 488 Y---NVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLE 552 (831)
Q Consensus 488 ~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 552 (831)
| ..+-.++...+++.+|++...+.++.. +.|+.++.--..+|.-...+|.|+.-|+...+.++.
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 2 233344455667777777777776542 334666666666666666666776666666655443
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=6.5e-08 Score=89.45 Aligned_cols=351 Identities=14% Similarity=0.062 Sum_probs=224.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH-HHHHHHH
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV-IVIKALC 251 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 251 (831)
+...+..+.+..++.+|++++..-.+..+. +......+...|....++..|...|+++-.. .|...-|. .-...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 456666678889999999999988887644 6667888899999999999999999998764 35544443 2344566
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHH
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAY--STCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKA 329 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (831)
+.+.+..|+.+...|.+. |+...- ..-.......+|+..+..++++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 889999999999888753 333222 222233557888999998888866433 444555566667789999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh----HHHHHHHHHhcCChHHHHHHHHH
Q 003315 330 ECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGV----LSVILKGLCQKGMASATIKQFLE 405 (831)
Q Consensus 330 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~ 405 (831)
.+-|+...+-+--.....|+..+. ..+.++++.|++...+++++|++..+.. ..-.+.+-. .|+ -+.+...
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~lh~S 238 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLVLHQS 238 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hHHHHHH
Confidence 999999887643335566775554 4577999999999999999886532210 000000000 000 0000000
Q ss_pred HHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCC
Q 003315 406 FKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR-QIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPD 484 (831)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 484 (831)
--...+|.-...+.+.|+++.|.+.+.+|.-+ ....|+++...+.-. --.+++.+..+-+.-+.+.++- .
T Consensus 239 -------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P 309 (459)
T KOG4340|consen 239 -------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-P 309 (459)
T ss_pred -------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-C
Confidence 01234555556677889999999998888644 234566666655422 2245666666666666666553 4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 003315 485 IITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLE-PNFVTHNMIIEGLCMGGRVEEAEAFLDGL 546 (831)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 546 (831)
..||..++-.||++.-++.|-+++.+--..... .+...|+.+=......-..+++.+-++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 578888888999998888888887653322111 22333333222222344566666655544
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.2e-07 Score=93.66 Aligned_cols=408 Identities=11% Similarity=0.006 Sum_probs=216.0
Q ss_pred HHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC
Q 003315 125 RILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS 204 (831)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 204 (831)
......|+++.|...|.+.+..+|. +...|..-..+|+..|+|++|+.--.+.++..+. .
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-------------------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w 69 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-------------------NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-W 69 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-------------------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-h
Confidence 4567789999999999999988554 4456778888999999999999999999888755 6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH--HHhCCCCCCHHHHHHHH
Q 003315 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLE--MEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--m~~~~~~p~~~~~~~l~ 282 (831)
...|+..+.++.-.|++++|+..|.+-++.. +.|...++.+..++... .. +.+.|.. |.. ++..++.|-
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~-~l~~~p~t~---- 140 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHE-KLANLPLTN---- 140 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--HH-hhhhccCcHHHH-HhhcChhhh----
Confidence 7789999999999999999999999998864 45666777777776211 00 0111110 000 001111110
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHH---HHHHHHHhcCCHhH-HHHHHHHHHH-CCCCC--------------
Q 003315 283 EGLCMNGMLDLGYELLLKWEEADIPLSAFAYT---VVIRWFCDQNKLEK-AECVLLHMEK-QGVVP-------------- 343 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~-A~~~~~~~~~-~~~~p-------------- 343 (831)
.+... .+.....+.+..+ |-+...|. .++.+.......+. ....-..+.. .+..|
T Consensus 141 -~~~~~----~~~~~~l~~~~~~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~ 214 (539)
T KOG0548|consen 141 -YSLSD----PAYVKILEIIQKN-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDN 214 (539)
T ss_pred -hhhcc----HHHHHHHHHhhcC-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchh
Confidence 11111 1111111111110 00000000 00000000000000 0000000000 00000
Q ss_pred --------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH
Q 003315 344 --------DVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNK 415 (831)
Q Consensus 344 --------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 415 (831)
-..-...+.+...+..+++.|++-+....+.. .+..-++....++...|...+.+.......+.|.. ..
T Consensus 215 ~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~r 291 (539)
T KOG0548|consen 215 TEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LR 291 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HH
Confidence 01123445666666677777777777766654 24444455555666666666665555554444332 12
Q ss_pred hhHH-------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchH
Q 003315 416 VCYD-------VIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITY 488 (831)
Q Consensus 416 ~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 488 (831)
..|+ .+..+|.+.++++.|+..|.+.......|+. ..+....+++........-.++.. ..-.
T Consensus 292 ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~ 361 (539)
T KOG0548|consen 292 ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEE 361 (539)
T ss_pred HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHH
Confidence 2222 2333555566677777777765543322221 122233444444444433322221 1111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcC
Q 003315 489 NVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTG 565 (831)
Q Consensus 489 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g 565 (831)
..-...+.+.|++..|...+.++++.. |.|...|....-+|.+.|.+..|.+--+...+.+|.. |..=+.++....
T Consensus 362 r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 362 REKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 112445566777777777777777765 5566777777777777777777777776666666654 222333344445
Q ss_pred CHHHHHHHHHHHHhCC
Q 003315 566 HTKEAFQLFMRLSNQG 581 (831)
Q Consensus 566 ~~~~A~~~~~~~~~~~ 581 (831)
+|++|++.|.+..+.+
T Consensus 441 ~ydkAleay~eale~d 456 (539)
T KOG0548|consen 441 EYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5666666666655554
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=4.9e-07 Score=83.79 Aligned_cols=325 Identities=11% Similarity=-0.002 Sum_probs=212.6
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 003315 123 IVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV 202 (831)
Q Consensus 123 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 202 (831)
.+..+.+..+++.+.+++..-.+..|. +......|+.+|-...++..|.+.|+++-...+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~-------------------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~ 76 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPR-------------------SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE 76 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCcc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence 334455566777777777665544332 4456779999999999999999999998876433
Q ss_pred cChhhH-HHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003315 203 WSICSC-NYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL--CKKGSMQEAVEVFLEMEKAGVTPNAFAYS 279 (831)
Q Consensus 203 ~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 279 (831)
..-| ..-.+.+.+.+.+..|+++...|... ++...-..-+.+. -..+++..+..+.++.... .+..+.+
T Consensus 77 --~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~i 148 (459)
T KOG4340|consen 77 --LEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQI 148 (459)
T ss_pred --HHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhc
Confidence 3323 22456777889999999999887642 3333222222222 3468888888888876532 3556666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-------------CCH-
Q 003315 280 TCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVV-------------PDV- 345 (831)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------p~~- 345 (831)
.......+.|+++.|.+-|+...+-+--.....|+.-+ +..+.|+++.|++...+++++|+. ||+
T Consensus 149 n~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr 227 (459)
T KOG4340|consen 149 NLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR 227 (459)
T ss_pred cchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh
Confidence 77777889999999999999998875333445566444 455778999999999999887643 221
Q ss_pred --------------HHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003315 346 --------------YAYSALISGYCKFGKINKALLLHHEMTSK-GIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMG 410 (831)
Q Consensus 346 --------------~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 410 (831)
..+|.-...+.+.++++.|.+.+..|.-+ ....|+.|+..+.-. -..+++.+..+-+.-++..+
T Consensus 228 svgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 228 SVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred cccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 11233334566889999999998888643 334566666544322 23455666666667777665
Q ss_pred CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHccCChhhHHHHHHHHH
Q 003315 411 FFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQI-VPDVVNYTTMICGYCLQGKLGDALDLFKEMK 477 (831)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 477 (831)
+ ....||..++-.||+..-++-|-+++.+-...-. -.+...|+.|-....-.-.+++|.+-+..+.
T Consensus 307 P-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 307 P-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred C-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 5 4577888899999999889988888765332211 0133344433222223456666666555543
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=1.6e-06 Score=91.06 Aligned_cols=203 Identities=12% Similarity=0.030 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+..|..++..+...|+.+.+...+....+..+... + ........+..+...|++++|...++++
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~e~~~~~a~~~~~~g~~~~A~~~~~~~ 69 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA-T---------------ERERAHVEALSAWIAGDLPKALALLEQL 69 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC-C---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455555566666666666555555554433211 0 1122334455567788888888888888
Q ss_pred HHcCCCcChhhHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003315 197 NRRGFVWSICSCNYFMNQLVE----CGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVT 272 (831)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 272 (831)
++..+. +..++.. ...+.. .+..+.+.+.++.... ..+........+...+...|++++|.+.+++..+.. +
T Consensus 70 l~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p 145 (355)
T cd05804 70 LDDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-P 145 (355)
T ss_pred HHHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 877543 4444332 222222 3444555555544111 112223344455567778889999999998888764 4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCh--hhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 273 PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADI-PLSA--FAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
.+...+..+..++...|++++|...+++...... +++. ..|..+...+...|++++|..++++....
T Consensus 146 ~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 146 DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 4556777788888889999999998888877532 1222 23556788888899999999999887644
No 101
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.99 E-value=0.0001 Score=79.45 Aligned_cols=225 Identities=18% Similarity=0.159 Sum_probs=143.8
Q ss_pred HHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHH--HHHcCChhHHHHHHHHHHHcCCCcC
Q 003315 127 LCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKA--YVSVGMFDEGIDILFQINRRGFVWS 204 (831)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~ 204 (831)
....++++.|++...+++++.|+. .|..++++ +.+.|+.++|..+++.....+.. |
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~---------------------~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D 76 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNA---------------------LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-D 76 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCc---------------------HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-c
Confidence 345678888888888888875541 12233333 46899999999888877666544 8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003315 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG 284 (831)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (831)
..+...+-..|.+.++.++|..+|++..... |+......+..+|.+.+++.+-.++--++-+. .+.+...+=.+++.
T Consensus 77 ~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 77 DLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISL 153 (932)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHH
Confidence 8889999999999999999999999998753 67777777778888888876655544444432 22233333333333
Q ss_pred HHhcC-C---------hhHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHhHHHHHH-HHHHHCCCCCCHHHHHHHH
Q 003315 285 LCMNG-M---------LDLGYELLLKWEEAD-IPLSAFAYTVVIRWFCDQNKLEKAECVL-LHMEKQGVVPDVYAYSALI 352 (831)
Q Consensus 285 ~~~~~-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~li 352 (831)
+...- . ..-|...++.+.+.+ .-.+..-.......+-..|++++|.+++ ....+.-..-+...-+.-+
T Consensus 154 ilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~ 233 (932)
T KOG2053|consen 154 ILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKL 233 (932)
T ss_pred HHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 33211 1 123455556665543 1112222233344455678888888888 3344332333444445566
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC
Q 003315 353 SGYCKFGKINKALLLHHEMTSKGI 376 (831)
Q Consensus 353 ~~~~~~~~~~~A~~~~~~~~~~~~ 376 (831)
..+...++|.+..++..++...|.
T Consensus 234 dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 234 DLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHhcChHHHHHHHHHHHHhCC
Confidence 777788888888888888877754
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=2.3e-07 Score=94.35 Aligned_cols=223 Identities=9% Similarity=-0.020 Sum_probs=140.6
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCc
Q 003315 88 VEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGST 167 (831)
Q Consensus 88 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (831)
.+..+...|+...|.-+|+.+.+.++ .+.+.|..+..+-...++...|..++++.++.+|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~------------------ 351 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPT------------------ 351 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc------------------
Confidence 34455566777777777777765543 36777777777777777777777777777777554
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHH-----------HHHHHcCChhHHHHHHHHHH-hcC
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFM-----------NQLVECGKVDMALAVYQHLK-RLG 235 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~A~~~~~~~~-~~~ 235 (831)
+..+.-.|+..|...|.-.+|+..++.-++..++ |..+. ..+..........++|-++. ..+
T Consensus 352 -NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~ 425 (579)
T KOG1125|consen 352 -NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP 425 (579)
T ss_pred -cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 4455667777777777777777777776554322 00000 01111112233444454444 333
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003315 236 LSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV 315 (831)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (831)
..+|+..+..|.-.|--.|++++|++.|+.++... +.|...||-|...+....+.++|+..|++.++.. |--++++..
T Consensus 426 ~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyN 503 (579)
T KOG1125|consen 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYN 503 (579)
T ss_pred CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehh
Confidence 33566666666666777777777777777777653 3455677777777777777777777777777763 334556666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHH
Q 003315 316 VIRWFCDQNKLEKAECVLLHME 337 (831)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~ 337 (831)
|.-.|...|.+++|.+.|-..+
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHH
Confidence 7777777777777777766554
No 103
>PLN02789 farnesyltranstransferase
Probab=98.86 E-value=3.1e-06 Score=84.79 Aligned_cols=221 Identities=14% Similarity=0.092 Sum_probs=163.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHH
Q 003315 96 KEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDA 175 (831)
Q Consensus 96 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (831)
+++..|..+|+.+... .++.++|+.++.++++..|. +..+|..
T Consensus 34 ~~~~~a~~~~ra~l~~------------------~e~serAL~lt~~aI~lnP~-------------------~ytaW~~ 76 (320)
T PLN02789 34 PEFREAMDYFRAVYAS------------------DERSPRALDLTADVIRLNPG-------------------NYTVWHF 76 (320)
T ss_pred HHHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHCch-------------------hHHHHHH
Confidence 4677777777766543 34566777788888877554 4457777
Q ss_pred HHHHHHHcC-ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 176 MIKAYVSVG-MFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKV--DMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 176 l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
-..++...| .+++++..++++++.+++ +..+++....++.+.++. ++++..++.+++.. +.|..+|+....++.+
T Consensus 77 R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~ 154 (320)
T PLN02789 77 RRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRT 154 (320)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 777777777 689999999999998866 667788877777777763 67888998888765 5678899998888999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCh----hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMN---GML----DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ-- 323 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 323 (831)
.|+++++++.++++++.+ ..|..+|+....++.+. |.. ++......+++... |.+...|+.+...+...
T Consensus 155 l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~ 232 (320)
T PLN02789 155 LGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKE 232 (320)
T ss_pred hhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCc
Confidence 999999999999999876 44666777776665554 222 45677777777765 67788888888877763
Q ss_pred --CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003315 324 --NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKF 358 (831)
Q Consensus 324 --g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 358 (831)
++..+|.+.+.+..+.++. +......|++.|+..
T Consensus 233 ~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~ 268 (320)
T PLN02789 233 ALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEG 268 (320)
T ss_pred ccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhh
Confidence 3456688888887765433 667777888888753
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=1.7e-05 Score=94.83 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=31.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhC----CCC-----ChHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003315 526 IIEGLCMGGRVEEAEAFLDGLKGK----CLE-----NYSAMINGYCKTGHTKEAFQLFMRLSNQG 581 (831)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~----~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (831)
+..++...|+.++|...+++.... +.. ....+..++...|+.++|...+.++.+..
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 344455556666665555554332 000 13334556667777777777777776654
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.80 E-value=2.5e-05 Score=93.46 Aligned_cols=375 Identities=11% Similarity=-0.022 Sum_probs=198.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
...+..+...|++.+|...+..+... ..-..........+...|+.+.+..+++.+.......++.........+...
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 34455566666666666544332111 0001112222334455666666666665542211112222233344445566
Q ss_pred CChHHHHHHHHHHHhCC--C----CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHH
Q 003315 254 GSMQEAVEVFLEMEKAG--V----TPNA--FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS----AFAYTVVIRWFC 321 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~--~----~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 321 (831)
|++++|...++.+.+.- . .+.. .....+...+...|++++|...+++..+.....+ ....+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 77777777776654320 0 0111 1222233445567777777777777665311111 123445556666
Q ss_pred hcCCHhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHH
Q 003315 322 DQNKLEKAECVLLHMEKQ----GV-VPDVYAYSALISGYCKFGKINKALLLHHEMTSK----GIK--T-NCGVLSVILKG 389 (831)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~ 389 (831)
..|++++|...+++.... |. .+...++..+...+...|+++.|...+++.... +.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 777777777777666532 11 111234445566677777777777776665431 211 1 12233344455
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChh--hH--HHHHHH
Q 003315 390 LCQKGMASATIKQFLEFKDM----GFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR--QIVPDVV--NY--TTMICG 459 (831)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~--~~--~~li~~ 459 (831)
+...|++++|...+.+.... +.......+..+...+...|+.++|.+.++..... ....... .. ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 66667777777777665432 11112334455666777888888888877776432 1110110 10 112233
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHH
Q 003315 460 YCLQGKLGDALDLFKEMKEMGHKPDI---ITYNVLAGAFAQYGAVQKAFDLLNYMKRH----GLEP-NFVTHNMIIEGLC 531 (831)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~ 531 (831)
+...|+.+.|...+............ ..+..+..++...|++++|...++..... +... ...+...+..++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 45578888888887665432111110 11345666777888888888888877642 2222 1235556666778
Q ss_pred cCCCHHHHHHHHHHhhhCC
Q 003315 532 MGGRVEEAEAFLDGLKGKC 550 (831)
Q Consensus 532 ~~g~~~~a~~~~~~~~~~~ 550 (831)
+.|+.++|...+.+.....
T Consensus 743 ~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 8889888888888876553
No 106
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.77 E-value=0.00062 Score=73.78 Aligned_cols=516 Identities=13% Similarity=0.081 Sum_probs=284.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHH
Q 003315 95 RKEPKIALSFFEQLKRSGFSHNLCTYAAI--VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRL 172 (831)
Q Consensus 95 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (831)
.+++..|+.-...+.+. .|+.. |..+ +-.+.+.|+.++|..+++..-.. +. + +..+
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~-----------------~-D~~t 79 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGL-KG-----------------T-DDLT 79 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccC-CC-----------------C-chHH
Confidence 45889999999998765 23332 2333 33467899999998666543222 11 1 5567
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
...+-..|...|++++|..+|+++.+.. |+......+..+|++.+.+.+-.++=-++-+ .++.++..+..++....+
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHH
Confidence 7889999999999999999999999875 4577778888899998887664444444333 245567777777777665
Q ss_pred cCC----------hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHH-HHHHHCCCCCChhhHHHHHHHH
Q 003315 253 KGS----------MQEAVEVFLEMEKAG-VTPNAFAYSTCIEGLCMNGMLDLGYELL-LKWEEADIPLSAFAYTVVIRWF 320 (831)
Q Consensus 253 ~g~----------~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~ 320 (831)
.-. ..-|.+.++.+.+.+ ---+..-.......+...|++++|.+++ ....+.-.+.+...-+.-+..+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 321 234666677776653 2222333334445677889999999999 4444444445556666778888
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----------------HhcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 003315 321 CDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGY----------------CKFGKINKALLLHHEMTSKGIKTNCGVLS 384 (831)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 384 (831)
...+++.+..++-.++...|.+ | |...++.+ ...+..+...+..++......+...-...
T Consensus 237 k~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~l 312 (932)
T KOG2053|consen 237 KLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARL 312 (932)
T ss_pred HHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHH
Confidence 8999999999999999988654 3 33322211 11223333344333333321111111111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-------hHHHHH
Q 003315 385 VILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVV-------NYTTMI 457 (831)
Q Consensus 385 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li 457 (831)
-+..-+..-|+.++..-.|-.-... ..+|..=+..|...=..+.-..++...... .++.. .+...+
T Consensus 313 el~kr~~~~gd~ee~~~~y~~kfg~-----kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l 385 (932)
T KOG2053|consen 313 ELDKRYKLIGDSEEMLSYYFKKFGD-----KPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVL 385 (932)
T ss_pred HHHHHhcccCChHHHHHHHHHHhCC-----CcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHH
Confidence 1222223456666655444322111 111111122222222233333333332211 01111 011111
Q ss_pred HHHHccC-----ChhhHHHHHHHHH---HcC------CCCCcch---------HHHHHHHHHhcCCHH---HHHHHHHHH
Q 003315 458 CGYCLQG-----KLGDALDLFKEMK---EMG------HKPDIIT---------YNVLAGAFAQYGAVQ---KAFDLLNYM 511 (831)
Q Consensus 458 ~~~~~~g-----~~~~A~~~~~~~~---~~~------~~~~~~~---------~~~l~~~~~~~g~~~---~a~~~~~~~ 511 (831)
..-.-.| .-+....+++++. +.| .-|...+ .+.+++.+.+.++.. +|+-+++..
T Consensus 386 ~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~g 465 (932)
T KOG2053|consen 386 LLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENG 465 (932)
T ss_pred HHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 1111112 1233333343332 222 2233322 356677888887765 455555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC--CChHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCccc
Q 003315 512 KRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL--ENYSAMI-NGYCKTGHTKEAFQLFMRLSNQGVLVKKSS 588 (831)
Q Consensus 512 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 588 (831)
.... +.|..+--.+|..|+-.|-+..|.++++.+.-+.. ++...++ .-+...|++..+...++.....--. +..-
T Consensus 466 lt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~-~~kE 543 (932)
T KOG2053|consen 466 LTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDS-SLKE 543 (932)
T ss_pred hhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhh-hhhh
Confidence 5543 55666667788889888999999999987765433 3344433 3344567777777777665443211 1222
Q ss_pred HHHHHHHHHhcCCHHHHHHHH---HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 589 CNKLITNLLILRDNNNALKLF---KTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLV 648 (831)
Q Consensus 589 ~~~l~~~~~~~~~~~~a~~~~---~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 648 (831)
...++..-.+.|.+.+..++. +++..........+-+..++.++..++.++-...+..+.
T Consensus 544 ~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 544 TPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 233444445666666655443 333322222233344556677777787777766666554
No 107
>PLN02789 farnesyltranstransferase
Probab=98.76 E-value=8.4e-06 Score=81.75 Aligned_cols=216 Identities=14% Similarity=-0.006 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECG-KVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
.++..+-..+...++.++|+..+.++++.++. +..+++....++...| .+++++..++++.+.. +.+..+|+.....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 34555555666788999999999999998755 7778888888888888 5799999999999765 4566678766666
Q ss_pred HHhcCCh--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---C
Q 003315 250 LCKKGSM--QEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ---N 324 (831)
Q Consensus 250 ~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g 324 (831)
+.+.|+. ++++..++++.+.. +-|..+|+...-++...|+++++++.+.++++.+ +.+..+|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccc
Confidence 6667763 67899999998875 4577889988888999999999999999999987 55677777766665544 2
Q ss_pred CH----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 003315 325 KL----EKAECVLLHMEKQGVVPDVYAYSALISGYCKF----GKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQ 392 (831)
Q Consensus 325 ~~----~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 392 (831)
.+ +++.+...+++...+. |...|+-+..++... +...+|.+.+.+....++ .+...+..++..++.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 22 4567777677776554 777888888777763 344667777777666432 245556666666654
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.9e-06 Score=87.91 Aligned_cols=257 Identities=10% Similarity=-0.007 Sum_probs=179.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
..+.-+.+.|++.+|.-.|+.+++.+|. +..+|..|+..-...++-..|+..+++.++.. +.|......|.-.|...|
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence 5566677888888888888888888755 88888888888888888888888888888764 445667777777888888
Q ss_pred ChHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCC
Q 003315 255 SMQEAVEVFLEMEKAGVT--------PNAFAYSTCIEGLCMNGMLDLGYELLLKWEE-ADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
.-.+|++.++.-+....+ ++...-.. ..+.....+....++|-++.. .+..+|+.+...|.-.|--.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 888888888877553210 00000000 111222233444455555443 3444788888888888888999
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHH
Q 003315 326 LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNC-GVLSVILKGLCQKGMASATIKQFL 404 (831)
Q Consensus 326 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~ 404 (831)
+++|.+.|+..+...+. |...||.|...+....+.++|+..|++.++. +|+- ....-|.-.|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999998887554 7788999999998888999999999998874 4443 344556677888899999988887
Q ss_pred HHHHC---------CCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 003315 405 EFKDM---------GFFLNKVCYDVIVDSLCKLGEVEKAMILF 438 (831)
Q Consensus 405 ~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 438 (831)
..+.. ...++...|.+|=.++.-.++.|.+.+..
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 65432 12234567777777777777776554443
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.74 E-value=2.6e-07 Score=91.23 Aligned_cols=163 Identities=17% Similarity=0.149 Sum_probs=118.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccc
Q 003315 626 KLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKIN 705 (831)
Q Consensus 626 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 705 (831)
....++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..|.. ..-+..++..+.
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~ 177 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHH
Confidence 3345566788888888877542 3667777788899999999999999999986 344543 333444444322
Q ss_pred cCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003315 706 LKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCG 785 (831)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~ 785 (831)
. +.+.+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.+++.+..+.. +-|+.+...++.+
T Consensus 178 ~-----------g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~ 244 (290)
T PF04733_consen 178 T-----------GGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVC 244 (290)
T ss_dssp H-----------TTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHH
T ss_pred h-----------CchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence 1 235688999999998753 56788899999999999999999999999998753 3357788888888
Q ss_pred HHhcCCH-HHHHHHHHHHHhCCCCCCHH
Q 003315 786 YLAKGDL-DRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 786 ~~~~g~~-~~A~~~~~~~~~~g~~pd~~ 812 (831)
....|+. +.+.++++++.. ..|+..
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred HHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 8888887 778889999887 567654
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=2.8e-06 Score=78.35 Aligned_cols=165 Identities=18% Similarity=0.052 Sum_probs=137.5
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIE 283 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 283 (831)
|... ..+-..+.-.|+-+....+....... .+.|......++....+.|++..|+..|+++.... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 56677788888888888888776543 24566666778889999999999999999998765 789999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003315 284 GLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINK 363 (831)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 363 (831)
+|.+.|++++|..-|.+..+.. +-++...+.+...+.-.|+++.|+.++......+.. |..+-..+..+....|+++.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 9999999999999999999884 567888899999999999999999999999887544 77777788888899999999
Q ss_pred HHHHHHHHHh
Q 003315 364 ALLLHHEMTS 373 (831)
Q Consensus 364 A~~~~~~~~~ 373 (831)
|..+...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9988766544
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.69 E-value=6.1e-07 Score=88.67 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH-HHHHHHHH
Q 003315 602 NNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCL-REARDVFN 680 (831)
Q Consensus 602 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 680 (831)
+.+|..+|+++... ..++..+.+.+..+....|++++|.+++.+..+.+.. |+.+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 33444444443322 2344555555555555556666666555555544333 444444555555555555 44445555
Q ss_pred HHHH
Q 003315 681 DMKQ 684 (831)
Q Consensus 681 ~m~~ 684 (831)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 5544
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.69 E-value=0.00065 Score=69.26 Aligned_cols=426 Identities=12% Similarity=0.099 Sum_probs=212.6
Q ss_pred CCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH
Q 003315 165 GSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV 244 (831)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 244 (831)
.++.+..+|+.|++-+... -++++.+.|+++...- +.....|..-+....+.++++.++.+|.+-+.. ..+...|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 3456788999999977666 9999999999988763 446777888899999999999999999998754 35677777
Q ss_pred HHHHHHHh-cCCh----HHHHHHHHHHHh-CCCCCCH-HHHHHHH---HH------HHhcCChhHHHHHHHHHHHCCCCC
Q 003315 245 IVIKALCK-KGSM----QEAVEVFLEMEK-AGVTPNA-FAYSTCI---EG------LCMNGMLDLGYELLLKWEEADIPL 308 (831)
Q Consensus 245 ~l~~~~~~-~g~~----~~A~~~~~~m~~-~~~~p~~-~~~~~l~---~~------~~~~~~~~~a~~~~~~~~~~~~~~ 308 (831)
.-+.--.+ .|+. +...+.|+-..+ .|+.+-. ..|+..+ .. +..+.+.+...++|++++..-+..
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 66654332 2333 233444544433 4544332 2333333 22 333445566777777777642111
Q ss_pred ChhhHH------HH-----HHHHH--hcCCHhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChHH--HHHHHHHH
Q 003315 309 SAFAYT------VV-----IRWFC--DQNKLEKAECVLLHMEK--QGVVPDVYAYSALISGYCKFGKINK--ALLLHHEM 371 (831)
Q Consensus 309 ~~~~~~------~l-----~~~~~--~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~li~~~~~~~~~~~--A~~~~~~~ 371 (831)
=...|+ .= ++-++ +...+-.|.++++++.. .|......+ .-..|--++ ..+++...
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHH
Confidence 111111 11 11111 22345666666666643 222111111 000111111 11111111
Q ss_pred H----hCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHH-HHCCCCcCHhh-----HHHHHHHHHhcCC-------HHH
Q 003315 372 T----SKGIK-TNCGVLSVILKGLCQKGMASATIKQFLEF-KDMGFFLNKVC-----YDVIVDSLCKLGE-------VEK 433 (831)
Q Consensus 372 ~----~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~-----~~~l~~~~~~~g~-------~~~ 433 (831)
+ +++.. -+...... ...-.+++. .-.+..|+... +....+.+...|+ -++
T Consensus 244 I~wEksNpL~t~~~~~~~~------------Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e 311 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTR------------RVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDE 311 (656)
T ss_pred HHHHhcCCcccccccHHHH------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHH
Confidence 1 11111 00000000 000000100 00011111000 0000111111221 345
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHH---HccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 434 AMILFKEMKDRQIVPDVVNYTTMICGY---CLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNY 510 (831)
Q Consensus 434 A~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (831)
+..+++.....-...+..+|..+..-- ....+.+.....++++......--..+|...+..-.+..-...|..+|.+
T Consensus 312 ~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~k 391 (656)
T KOG1914|consen 312 AASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKK 391 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHH
Confidence 555555544322222333333332211 11113445555555554432222334555666666666666777777777
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 003315 511 MKRHGLEP-NFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVK- 585 (831)
Q Consensus 511 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 585 (831)
+.+.+..+ ++.++++++..+| .++.+.|.++|+--.+.-++. -...+..+...|+-..+..+|++....+..++
T Consensus 392 aR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 392 AREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred HhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 77655544 5556666665443 456666777776655543333 34455556666777777777777776643333
Q ss_pred -cccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 586 -KSSCNKLITNLLILRDNNNALKLFKTMIT 614 (831)
Q Consensus 586 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (831)
..+|..++.--..-|+...+.++-+++..
T Consensus 471 s~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 471 SKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35677777777777888877777766654
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.69 E-value=2.5e-06 Score=83.44 Aligned_cols=187 Identities=17% Similarity=0.075 Sum_probs=132.5
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc--ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh---
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW--SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY--- 241 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--- 241 (831)
+..+..+..++..+...|++++|+..|++++...+.. ...++..+..++...|++++|...|+++.+.. +.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 4466788899999999999999999999998876431 12466788899999999999999999998754 22222
Q ss_pred hHHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh
Q 003315 242 TYVIVIKALCKK--------GSMQEAVEVFLEMEKAGVTPNAF-AYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFA 312 (831)
Q Consensus 242 ~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 312 (831)
++..+...+.+. |++++|.+.|+++.+. .|+.. .+..+..... ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 455556666554 7889999999999876 34432 2222211100 000 00 011
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 313 YTVVIRWFCDQNKLEKAECVLLHMEKQGVV-P-DVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
...+...+.+.|++++|...++...+..+. | ....+..+..++.+.|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 235667788899999999999998876331 2 3567888889999999999999988887765
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=3.3e-06 Score=93.42 Aligned_cols=167 Identities=14% Similarity=0.054 Sum_probs=130.0
Q ss_pred ccCChhHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHH
Q 003315 94 LRKEPKIALSFFEQLK--RSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTR 171 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (831)
..+..+.+.+.+-.+. -+.+.+++..+..++++..+.|.+++|..+++.+++..|+ +..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-------------------~~~ 121 (694)
T PRK15179 61 RHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-------------------SSE 121 (694)
T ss_pred HhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-------------------cHH
Confidence 3344444444333332 2335778999999999999999999999999998888665 566
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
+...++..+.+.+++++|+..+++++..++. +......+..++.+.|++++|..+|+++...+ +.+..++..+...+.
T Consensus 122 a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 122 AFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLT 199 (694)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 7788899999999999999999999988755 77788888889999999999999999988743 445788888888999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
+.|+.++|...|++..+.. .|....|+.++
T Consensus 200 ~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 200 RRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 9999999999999988753 45555555544
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=5.9e-06 Score=76.22 Aligned_cols=160 Identities=14% Similarity=0.037 Sum_probs=130.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
..+...+...|+-+.+..+..+.....+. +....+..+....+.|++..|+..|.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 56777788888888888888876655433 66677778888999999999999999988754 67888999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 003315 254 GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVL 333 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 333 (831)
|+++.|...|.+..+.- .-+...++.+.-.+.-.|+++.|..++....... +.+..+-..+.......|++++|+++-
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999988863 3355677888888889999999999998888775 457778888888899999999998887
Q ss_pred HHHH
Q 003315 334 LHME 337 (831)
Q Consensus 334 ~~~~ 337 (831)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6544
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=7.5e-06 Score=80.03 Aligned_cols=65 Identities=11% Similarity=-0.068 Sum_probs=36.7
Q ss_pred ChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCChhhHHHHHHHHHHhcC
Q 003315 83 NTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNL---CTYAAIVRILCCCGWQKKLESMLLELVRKKT 148 (831)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 148 (831)
+.....+..+...|+++.|...|+.+...... ++ ..+..++.++...|++++|...+..+++..|
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP 101 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 33334444555667777777777766544221 22 3445556666666666666666666665533
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=8.6e-08 Score=59.31 Aligned_cols=32 Identities=31% Similarity=0.823 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 736 GIRPDVISYTVLIAKLCNTQNLEDGITVFNEI 767 (831)
Q Consensus 736 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 767 (831)
|+.||..+||++|.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666655
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.54 E-value=0.0017 Score=66.37 Aligned_cols=421 Identities=11% Similarity=0.097 Sum_probs=235.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 003315 237 SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVV 316 (831)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (831)
|-|+.+|+.|++-+... -++++.+.++++... .+-....|..-|..-.+.++++..+.+|.+.+..-+ +...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 56788888888776544 888888888888753 234456788888888888888888888888877643 35555555
Q ss_pred HHHHHh-cCCHhH----HHHHHHHHHH-CCCCCC-HHHHHHHHHH---------HHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 317 IRWFCD-QNKLEK----AECVLLHMEK-QGVVPD-VYAYSALISG---------YCKFGKINKALLLHHEMTSKGIKTNC 380 (831)
Q Consensus 317 ~~~~~~-~g~~~~----A~~~~~~~~~-~~~~p~-~~~~~~li~~---------~~~~~~~~~A~~~~~~~~~~~~~~~~ 380 (831)
+.--.+ .|+... ..+.|+-... -|+++- ...|+..+.- |..+.+++...+++++++...+.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~--- 169 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH--- 169 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc---
Confidence 543222 233222 2233333332 343322 2234444332 23344555566666666554222
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCChh-------
Q 003315 381 GVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKD--RQIVPDVV------- 451 (831)
Q Consensus 381 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~------- 451 (831)
++++..+-|..... ..|..+-..++. .+...+..|.++++++.. +|......
T Consensus 170 --------------nlEkLW~DY~~fE~---~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 170 --------------NLEKLWKDYEAFEQ---EINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred --------------cHHHHHHHHHHHHH---HHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 12222221111111 112222111111 123345666666666542 22211111
Q ss_pred --------hHHHHHHHHHccC------Ch--hhHHHHHHHHH-HcCCCCCcch----HHHH-HHHHHhcCC-------HH
Q 003315 452 --------NYTTMICGYCLQG------KL--GDALDLFKEMK-EMGHKPDIIT----YNVL-AGAFAQYGA-------VQ 502 (831)
Q Consensus 452 --------~~~~li~~~~~~g------~~--~~A~~~~~~~~-~~~~~~~~~~----~~~l-~~~~~~~g~-------~~ 502 (831)
.|..+|..=..++ .. ....-.+++.+ -.+..|+... |..- -+.+...|+ .+
T Consensus 231 ~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 1333332211111 00 01111222211 1122222211 1110 112223333 45
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHhhhC---CCC-ChHHHHHHHHhcCCHHHHHHHHH
Q 003315 503 KAFDLLNYMKRHGLEPNFVTHNMIIEGLCMG---GRVEEAEAFLDGLKGK---CLE-NYSAMINGYCKTGHTKEAFQLFM 575 (831)
Q Consensus 503 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~---~~~-~~~~l~~~~~~~g~~~~A~~~~~ 575 (831)
++..+++..+..-...+..+|..+...-... ...+.....++++... ++. .|-.++..-.+..-.+.|..+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 6666666665543333444554444321111 1244444555555433 333 27788888888889999999999
Q ss_pred HHHhCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003315 576 RLSNQGVLV-KKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTP 654 (831)
Q Consensus 576 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 654 (831)
++.+.+..+ +..+...++.-+ -.++..-|..+|+--.+.- ..++.--...++-+...++-+.|+.+|+..+..++.|
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 999998777 445555555544 4688999999998777642 3444555667888999999999999999999886665
Q ss_pred C--HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 655 H--LVTYTMMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 655 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
| ...|..++.--..-|+...++++-+++...
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5 478999999999999999999998887653
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=1.2e-05 Score=75.09 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=99.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 003315 564 TGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGAL-CQAEE--MEQA 640 (831)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 640 (831)
.++.+++...+++..+.++. +...|..++..+...|++++|...++++.+.. +.+..++..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45667777777777777655 77788888888888888888888888888765 44677777888764 66677 5899
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003315 641 QLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYT 695 (831)
Q Consensus 641 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 695 (831)
.++++++++.++. +...+..+...+.+.|++++|+..|+++++. ..|+...+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~ 182 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQ 182 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHH
Confidence 9999999988665 7888899999999999999999999999875 445544433
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=3.9e-06 Score=78.23 Aligned_cols=125 Identities=9% Similarity=0.039 Sum_probs=91.8
Q ss_pred CCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHH
Q 003315 130 CGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCN 209 (831)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (831)
.++.+++...+...++..|+ +...|..++..|...|++++|+..|+++.+.++. +...+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-------------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~ 111 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-------------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYA 111 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 34455666666776666444 5667888888888888888888888888887754 777777
Q ss_pred HHHHHH-HHcCC--hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003315 210 YFMNQL-VECGK--VDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAF 276 (831)
Q Consensus 210 ~l~~~~-~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 276 (831)
.+..++ ...|+ .++|.+++++.++.+ +.++.++..+...+.+.|++++|+..|+++.+.. +|+..
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 777764 56666 488888888888765 4466777888888888888888888888887764 44443
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.53 E-value=5.1e-06 Score=73.11 Aligned_cols=96 Identities=15% Similarity=-0.064 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+..++..+...|++++|+..|++++..++. +..++..+..++.+.|++++|...|+...+.. +.++..+..+...+.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 4556788888899999999999998888744 77888888889999999999999999988764 567788888888888
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003315 252 KKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~ 269 (831)
+.|++++|++.|+...+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 899999999999988876
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.52 E-value=3e-06 Score=74.64 Aligned_cols=108 Identities=15% Similarity=0.065 Sum_probs=56.4
Q ss_pred HHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 541 AFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPS 620 (831)
Q Consensus 541 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 620 (831)
.++++..+.+|..+..++..+.+.|++++|...|+++....+. +...+..++.++...|++++|...|+++...+ +.+
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~ 91 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASH 91 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 4455555555555444555555566666666666655555433 44444555555555555555555555555443 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 621 KSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 650 (831)
...+..++.++...|+.++|...|+.+++.
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444445555555555555555555555543
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=5e-06 Score=87.19 Aligned_cols=217 Identities=18% Similarity=0.227 Sum_probs=126.5
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHH
Q 003315 412 FLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVL 491 (831)
Q Consensus 412 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 491 (831)
+|-...-..+...+...|-...|..++++.. .|...|.+|+..|+..+|..+..+..++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3344445566777778888888888887654 4566777788888888888888777763 5677777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC---ChHHHHHHHHhcCCHH
Q 003315 492 AGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLE---NYSAMINGYCKTGHTK 568 (831)
Q Consensus 492 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 568 (831)
.+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+|- +|-.++.+..+.++++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 77766666677777776654322 1112222233467777777777765555443 3666666666777777
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 569 EAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLV 648 (831)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 648 (831)
.|.+.|.......+. +...|+.+..++.+.++..+|...++++.+.+ .-+..+|...+.+..+.|.+++|.+.+.++.
T Consensus 537 ~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 777777666655433 34444444444444444444444444444443 2222233333333344444444444444443
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.6e-07 Score=58.14 Aligned_cols=34 Identities=44% Similarity=0.911 Sum_probs=28.0
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003315 650 KGLTPHLVTYTMMIHGYCKINCLREARDVFNDMK 683 (831)
Q Consensus 650 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 683 (831)
+|+.||..+||+||++||+.|+.++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888873
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=4.7e-05 Score=84.51 Aligned_cols=163 Identities=15% Similarity=0.052 Sum_probs=126.5
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
+.++.++..|+.+..+.|.+++|..+++.+.+..+. +..+...++.++.+.+++++|+..+++..... +.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 335778889999999999999999999999988755 77778888899999999999999999988865 4566777888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.. .+....|+.++. ++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HH
Confidence 888889999999999999998743 3447788888899999999999999999988763 333444444432 33
Q ss_pred hHHHHHHHHHHHC
Q 003315 327 EKAECVLLHMEKQ 339 (831)
Q Consensus 327 ~~A~~~~~~~~~~ 339 (831)
..-...++.+.-.
T Consensus 233 ~~~~~~~~~~~~~ 245 (694)
T PRK15179 233 NADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHHcCcc
Confidence 3344455555433
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=0.00014 Score=81.44 Aligned_cols=171 Identities=13% Similarity=-0.019 Sum_probs=108.8
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
+....++..|+..|...|++++|+.+.+..++..+. ....|..++..+...++.+.+..+ .+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 446678899999999999999999999988877543 555555555577777776665555 3222
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
......++.-...+...|.+. ..+..++-.+..+|-+.|+.+++..+++++++.+ +.++.+.|.++..|... ++
T Consensus 92 --~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 92 --SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred --hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 222233333333333344433 2233456666677777777777777777777766 56667777777777766 77
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
++|++++.+.... |...+++..+.+++.++...
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 7777766666543 44455666666666666554
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.47 E-value=7.5e-05 Score=84.06 Aligned_cols=205 Identities=12% Similarity=0.008 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCC---cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRR-GFV---WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV 244 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 244 (831)
+.-.|...+.-....++.+.|.+++++++.. ++. -....|.++++....-|.-+...++|++..+. ...-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4556777777777888888888888887653 111 12335666777777777777778888887763 22344677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHh
Q 003315 245 IVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPL--SAFAYTVVIRWFCD 322 (831)
Q Consensus 245 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 322 (831)
.|...|.+.+.+++|-++++.|.+. +......|...+..+.++++-+.|..++.++++.- |- ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence 7888888888888888888888774 23456677888888888888888888888777652 22 23444455556667
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003315 323 QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKT 378 (831)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 378 (831)
.|+-+.++.+|+.....-++ -...|+..|+.=.++|+.+.+..+|++....++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 78888888888888776444 56678888888888888888888888887776654
No 128
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.45 E-value=0.00013 Score=82.21 Aligned_cols=215 Identities=13% Similarity=0.035 Sum_probs=133.3
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc-CCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 193 LFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL-GLS---LNEYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
|++.+... +.+...|-..+.-....++.++|++++++.+.. ++. --...|.++++.-...|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444443 224555666677777777888888888777642 111 1123677777777777777777788887776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHH
Q 003315 269 AGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVP-DVYA 347 (831)
Q Consensus 269 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 347 (831)
. ...-..|..|...|.+.+.+++|-++++.|.+. +......|..++..+.++.+-+.|..++.+..+.-+.. ....
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 4 223345677777777888888888888887776 23566777777777777777777777777776642211 1223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003315 348 YSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFF 412 (831)
Q Consensus 348 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (831)
....+..-.+.|+.+++..+|+..+...++ -...|+.++..-.+.|+.+.+..+|+.+...++.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 344555556677777777777777665433 2334555555555555555555555555554443
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.45 E-value=7.5e-05 Score=83.55 Aligned_cols=239 Identities=9% Similarity=0.001 Sum_probs=154.3
Q ss_pred cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 203 WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
.+...+..++..+...+++++|.++.+...+.. |.....|..+...+.+.++..++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~-------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLID-------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhh--------------
Confidence 467788899999999999999999999877653 23344555555567777776666555 3332
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003315 283 EGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKIN 362 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 362 (831)
......++.....+...+... +.+..++..++.+|-+.|+.++|..+++++.+..+. |..+.|.+...|... +++
T Consensus 92 -~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 -SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred -hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 222233333333333334332 345568888999999999999999999999998755 888999999999999 999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 363 KALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
+|.+++.+.+.. +....++..+.++|..+....+. +++.-..+.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-----------------d~d~f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-----------------DFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-----------------cchHHHHHHHHHH
Confidence 999999887664 44555677777777776655332 2233333333333
Q ss_pred hC-CCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 003315 443 DR-QIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFA 496 (831)
Q Consensus 443 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 496 (831)
.. +...-..++-.+-..|-..++++++..+++.+++.... |.....-++..|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22 21222334444445555666666666666666665433 4444444454443
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=0.0006 Score=69.03 Aligned_cols=113 Identities=18% Similarity=0.176 Sum_probs=57.7
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhH
Q 003315 215 LVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPN-AFAYSTCIEGLCMNGMLDL 293 (831)
Q Consensus 215 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 293 (831)
+...|+++.|+..++.+++. .|.|+..+......+.+.|+..+|.+.++++... .|+ ......+..+|.+.|++++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 33445555555555555443 1334444444455555555555555555555544 333 3334444455555555555
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 003315 294 GYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAEC 331 (831)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 331 (831)
|..+++...... |.++..|..|.+.|...|+..++..
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 555555555543 4455555555555555555444433
No 131
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=4.4e-05 Score=80.36 Aligned_cols=214 Identities=13% Similarity=0.076 Sum_probs=102.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
..++..+...|....|+.+|++.-. +...+..|...|+..+|..+..+..+. +|++..|..+++.....
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 3455555555555555555554321 233344455555555555555444441 34555555555444444
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 003315 254 GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVL 333 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 333 (831)
.-+++|.++.+..... +-..+.....+.++++++.+.++.-.+.+ +....+|..+..+..+.++++.|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 4444444444432211 11111222223455555555555544443 334445555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 003315 334 LHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFL 413 (831)
Q Consensus 334 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (831)
.......+. +...||.+-.+|.+.++-.+|...+++..+- + ..
T Consensus 543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-----------------------------------n-~~ 585 (777)
T KOG1128|consen 543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-----------------------------------N-YQ 585 (777)
T ss_pred HHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-----------------------------------C-CC
Confidence 555543222 3344555555555555555555555555443 3 22
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 414 NKVCYDVIVDSLCKLGEVEKAMILFKEMKD 443 (831)
Q Consensus 414 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (831)
+...|...+....+.|.+++|++.+.++.+
T Consensus 586 ~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 344444444455566677777776666543
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=0.00013 Score=73.54 Aligned_cols=149 Identities=15% Similarity=0.077 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-hhhHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN-EYTYVIVI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~ 247 (831)
...+..-.+..+...|++++|...++.+++..+ .|+.........+.+.++.++|.+.++.++... |+ ...+..+.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a 381 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLA 381 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHH
Confidence 445666777788899999999999999888764 488888888999999999999999999999864 54 67788889
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
.++.+.|++.+|+.+++...... +.|...|..|.++|...|+..++.... ...+...|+++
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~ 442 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLE 442 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHH
Confidence 99999999999999999988764 678899999999999999988776554 44666779999
Q ss_pred HHHHHHHHHHHC
Q 003315 328 KAECVLLHMEKQ 339 (831)
Q Consensus 328 ~A~~~~~~~~~~ 339 (831)
.|...+....+.
T Consensus 443 ~A~~~l~~A~~~ 454 (484)
T COG4783 443 QAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHh
Confidence 999999888876
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00047 Score=63.85 Aligned_cols=127 Identities=24% Similarity=0.182 Sum_probs=78.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 003315 422 VDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCL----QGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQ 497 (831)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 497 (831)
+.++.+..+.+-|...+++|.+. .+..+.+.|..++.+ .+++.+|.-+|++|-+. ..|+..+.+-...++..
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~ 219 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQ 219 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHH
Confidence 34445566677777777777764 244556656555543 34677777777777654 34677777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHhhhCCCCC
Q 003315 498 YGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRV-EEAEAFLDGLKGKCLEN 553 (831)
Q Consensus 498 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~ 553 (831)
.|++++|..+++..+... ..++.+...++.+....|.. +-..+.+.++....|++
T Consensus 220 ~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 220 LGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred hcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 778888888887777664 34455555555444444443 33455556665555543
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.30 E-value=2.3e-05 Score=68.79 Aligned_cols=104 Identities=11% Similarity=0.014 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
..+...++..+...|++++|...++++...++. +...+..+...+.+.|++++|...|++..+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 345667888888888899998888888877643 77778888888888888888888888887764 4566777778888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGVTPNAFA 277 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 277 (831)
+...|++++|++.|++..+. .|+...
T Consensus 95 ~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 88888888888888888875 455444
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.0024 Score=58.90 Aligned_cols=166 Identities=12% Similarity=0.076 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 207 SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLC 286 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (831)
.+..++-+....++.+.|...++++... +|.+...-..-.-.+-..|++++|+++++..++.+ +.|.+++.--+...-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 4566777788889999999999997754 33333332222233556799999999999998875 566777777777777
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHH
Q 003315 287 MNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFG---KINK 363 (831)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~ 363 (831)
..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.-..+. +...+..+...+.-.| +.+-
T Consensus 132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHH
Confidence 888888998888888887 5789999999999999999999999999999876433 4455556666655444 4566
Q ss_pred HHHHHHHHHhCCC
Q 003315 364 ALLLHHEMTSKGI 376 (831)
Q Consensus 364 A~~~~~~~~~~~~ 376 (831)
|.+.|.+.++...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 7888888877644
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00021 Score=66.09 Aligned_cols=245 Identities=15% Similarity=0.112 Sum_probs=138.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH-
Q 003315 427 KLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAF- 505 (831)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~- 505 (831)
-.|.+..++..-....... -+...-.-+.++|...|.+..... +..... .|.......+.......++.+...
T Consensus 20 Y~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHH
Confidence 3455555555444332221 122222334445555554433222 222211 233333333333333334433332
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 506 DLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVK 585 (831)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 585 (831)
++.+.+.......+......-...|+..|++++|.+.+... .+.+..-.=+..+.+..+.+-|.+.+++|.+-+ +
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---e 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---E 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---h
Confidence 33333333333334333344444677777777777776652 122222222344556677777777777777653 5
Q ss_pred cccHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 003315 586 KSSCNKLITNLLIL----RDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTM 661 (831)
Q Consensus 586 ~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 661 (831)
..|++.|..++.+. +...+|.-+|+++... ..|+..+.+....++...|++++|..+++.++.+..+ ++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHH
Confidence 66777777777654 4577888888888763 3788888888888888999999999999999987665 6777766
Q ss_pred HHHHHHHcCCHHHH-HHHHHHHHH
Q 003315 662 MIHGYCKINCLREA-RDVFNDMKQ 684 (831)
Q Consensus 662 l~~~~~~~g~~~~A-~~~~~~m~~ 684 (831)
++..-...|...++ .+.+.++..
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Confidence 66666666665444 345555544
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0023 Score=58.94 Aligned_cols=165 Identities=16% Similarity=0.066 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+..+.-+....|+.+.|..++.++...- +.+..+-..-.-.+-..|++++|.++|+.+++.+ |.|..++-.-+...-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 45566666678899999999999987663 3244443334445667799999999999999876 566777777777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHhH
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQN---KLEK 328 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 328 (831)
..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-.. |.++..+..+...+.-.| +++.
T Consensus 132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 789988999998888775 46799999999999999999999999999999875 777888888888877665 4667
Q ss_pred HHHHHHHHHHCC
Q 003315 329 AECVLLHMEKQG 340 (831)
Q Consensus 329 A~~~~~~~~~~~ 340 (831)
|.+.|.+..+..
T Consensus 210 arkyy~~alkl~ 221 (289)
T KOG3060|consen 210 ARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHhC
Confidence 889999988863
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.14 E-value=9e-05 Score=65.02 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM 287 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 287 (831)
...++..+...|++++|...|+.+...+ +.+...+..+...+.+.|++++|...++...+.+ +.+...+..+..++..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2233344444444444444444444444443332 2223333333334444
Q ss_pred cCChhHHHHHHHHHHH
Q 003315 288 NGMLDLGYELLLKWEE 303 (831)
Q Consensus 288 ~~~~~~a~~~~~~~~~ 303 (831)
.|++++|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444333
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.09 E-value=0.00016 Score=64.07 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=66.6
Q ss_pred CCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh--hh
Q 003315 130 CGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSI--CS 207 (831)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~ 207 (831)
.++...+...+..++...+.. +....+...++..+...|++++|...|+.+....+.+.. .+
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s----------------~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a 87 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSS----------------PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA 87 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCC----------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 455555555555555553321 122344556666666777777777777776665433221 23
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEM 266 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 266 (831)
...+..++...|++++|+..++..... ...+..+......+.+.|++++|...|++.
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 344556666667777777666553322 233445556666666667777776666653
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=0.00019 Score=73.54 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 003315 244 VIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ 323 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (831)
..|+..+...++++.|+.+|+++.+. .|+. ...+++.+...++..+|.+++.+.++.. |.+.......++.+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 34455555567777777777777765 3443 3346666666677777777777777653 55666777777778888
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 324 NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMT 372 (831)
Q Consensus 324 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 372 (831)
++++.|.++.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888876333 45578888888888888888887777664
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.98 E-value=0.0003 Score=62.29 Aligned_cols=124 Identities=15% Similarity=0.062 Sum_probs=65.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC--hhhHHHHH
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWS---ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN--EYTYVIVI 247 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 247 (831)
|..++..+ ..++...+...++.+.+..+. + ..+...+...+...|++++|...|+.+......++ ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33333333 366666666666666665432 2 22233344666666777777777777665431121 12344455
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLK 300 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (831)
..+...|++++|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666667777777666553322 22333444455556666666666665554
No 142
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00078 Score=66.39 Aligned_cols=312 Identities=13% Similarity=0.012 Sum_probs=186.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhc
Q 003315 488 YNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKT 564 (831)
Q Consensus 488 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~ 564 (831)
.......+.+..++..|+..+..+++.. +.+..-|..-...+...|+++++.-..+.-...++.. +......+...
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 3444556667777888888888888775 3344445444446666777777766655544433322 34445555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHH-HHHHHhcCCHHHHHH
Q 003315 565 GHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAE-PSKSMYDKL-IGALCQAEEMEQAQL 642 (831)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l-~~~~~~~g~~~~A~~ 642 (831)
+...+|.+.++.- ..+ ....++..++........ |.-..+..+ ..++.-.|+.++|.+
T Consensus 131 ~~~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 131 SDLIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 5555665555410 000 111222233333322222 333444443 245667899999988
Q ss_pred HHHHHHHCCCCCCHhHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhccc
Q 003315 643 VFNVLVDKGLTPHLVTYTMMIH--GYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKE 720 (831)
Q Consensus 643 ~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 720 (831)
+--..++.+.. + .+..+++ ++.-.++.+.|...|++.+. ..|+...-...-..+-.+....... .-....|
T Consensus 191 ea~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~g--N~~fk~G 263 (486)
T KOG0550|consen 191 EAIDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERG--NDAFKNG 263 (486)
T ss_pred HHHHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhh--hhHhhcc
Confidence 88877775322 2 3333333 33366788999999998886 5677655433322222111000000 1123578
Q ss_pred CHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 003315 721 DVVDASVFWNEMKE---MGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAI 796 (831)
Q Consensus 721 ~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~ 796 (831)
.+.+|.+.+.+.+. .+.+|+...|.....+..+.|+..+|+.--++... +.|. ...+..-..++...+++++|+
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999874 35566777888888889999999999999998875 2322 223334456788889999999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcccccc
Q 003315 797 ALVDEMSVKGIQG-DDYTKSSLERGIEKARILQY 829 (831)
Q Consensus 797 ~~~~~~~~~g~~p-d~~~~~~l~~~~~~~~~~~~ 829 (831)
+-+++..+..-.+ +..++.....++.++.|..|
T Consensus 342 ~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ 375 (486)
T KOG0550|consen 342 EDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDW 375 (486)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhhhhhH
Confidence 9999988754432 34556666667777766543
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.92 E-value=0.00034 Score=71.71 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=89.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003315 209 NYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMN 288 (831)
Q Consensus 209 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (831)
..++..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|++++.+.++.. +.+..........|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 444555556677888888888877643 33 44456777777777788888888777642 34555566666677788
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 003315 289 GMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEK 338 (831)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (831)
++++.|+++.+++.+.. |.+..+|..|+.+|...|++++|+-.++.+.-
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888888888774 56677888888888888888888888877654
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.0089 Score=59.25 Aligned_cols=280 Identities=11% Similarity=0.002 Sum_probs=136.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
....+..+.+...|.+|+..+..+++..+. +...|..-+..+...+++++|+--.+.-++.. +.....+...-+.+..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhh
Confidence 335556678889999999999999998766 56667777778888889998887776655432 1122233333444444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCChhhHHHH-HHHHHhcCCHhHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADI-PLSAFAYTVV-IRWFCDQNKLEKAE 330 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~ 330 (831)
.++..+|.+.++.- ..+ ....++..++....... +|....+..+ ..++.-.|++++|.
T Consensus 130 ~~~~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 44444444444310 000 01112222222222111 1111222211 23344455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHH----------HHHHHhcCChHHH
Q 003315 331 CVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTN-CGVLSVI----------LKGLCQKGMASAT 399 (831)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l----------l~~~~~~~~~~~a 399 (831)
++--...+.... +......-..++.-.++.+.|...|++.+..++.-. ..+.... ..-..+.|.+..|
T Consensus 190 ~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 190 SEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 555554443211 111111111222334555555555555544322110 0011111 1113345566666
Q ss_pred HHHHHHHHHCC---CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHccCChhhHHHHH
Q 003315 400 IKQFLEFKDMG---FFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNY---TTMICGYCLQGKLGDALDLF 473 (831)
Q Consensus 400 ~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~ 473 (831)
.+.|.+.+... ..++...|........+.|+..+|+.--++..+. |.... ..-..++...++|++|.+-+
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555432 3345555666666666667777666666655543 32211 11223344456666666666
Q ss_pred HHHHHc
Q 003315 474 KEMKEM 479 (831)
Q Consensus 474 ~~~~~~ 479 (831)
++..+.
T Consensus 345 ~~a~q~ 350 (486)
T KOG0550|consen 345 EKAMQL 350 (486)
T ss_pred HHHHhh
Confidence 666543
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.88 E-value=2.2e-05 Score=49.61 Aligned_cols=33 Identities=39% Similarity=0.911 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDRGLEPD 775 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 775 (831)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00018 Score=68.13 Aligned_cols=99 Identities=20% Similarity=0.245 Sum_probs=85.4
Q ss_pred ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 003315 719 KEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAIA 797 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~ 797 (831)
.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+. +.|. ..+|..|+.+|...|++++|++
T Consensus 94 ~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 578999999999999753 44667889999999999999999999999987 5665 6789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 798 LVDEMSVKGIQGDDYTKSSLERGIE 822 (831)
Q Consensus 798 ~~~~~~~~g~~pd~~~~~~l~~~~~ 822 (831)
.|++.++ ++|+..+|-.=+..-.
T Consensus 171 aykKaLe--ldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHhhhc--cCCCcHHHHHHHHHHH
Confidence 9999998 9999998876555443
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.87 E-value=2.5e-05 Score=49.30 Aligned_cols=33 Identities=45% Similarity=0.893 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQRGITPD 690 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 690 (831)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999887
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=0.00065 Score=57.93 Aligned_cols=97 Identities=9% Similarity=0.029 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCC--cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CChhhHHHHHH
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFV--WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS--LNEYTYVIVIK 248 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~ 248 (831)
+..++..+.+.|++++|+..|.++.+..+. ....++..+..++.+.|+++.|...|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555555555555555555543321 01223444555555555555555555555442200 01233444445
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 003315 249 ALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~ 269 (831)
.+.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555544
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.00075 Score=57.55 Aligned_cols=108 Identities=15% Similarity=0.004 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHH
Q 003315 206 CSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN---EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVT--PNAFAYST 280 (831)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ 280 (831)
.++..++..+.+.|++++|...|+.+.+.. +.+ ...+..+...+.+.|++++|.+.|+.+...... ....++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 346677888999999999999999998753 222 356777899999999999999999999875211 12456778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003315 281 CIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV 315 (831)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (831)
+..++.+.|++++|...++++.+.. |.+..+..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY-PGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC-cCChhHHHH
Confidence 8889999999999999999999885 555554443
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.75 E-value=5.4e-05 Score=47.31 Aligned_cols=32 Identities=19% Similarity=0.618 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDRGLEP 774 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 774 (831)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 56666666666666666666666666666665
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0015 Score=62.43 Aligned_cols=113 Identities=14% Similarity=0.008 Sum_probs=87.1
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCCCChhh
Q 003315 166 STLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECG---KVDMALAVYQHLKRLGLSLNEYT 242 (831)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~ 242 (831)
++-+.+-|..|+..|++.|+++.|...|.++.+..++ ++..+..+..++.... ...++..+|+++++.+ +.|+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 3446778889999999999999999999999888744 7777888887776553 3568889999988765 456777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 243 YVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
...|...+...|++.+|...|+.|++.. |.......+|
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHH
Confidence 7777888889999999999999998863 3333344444
No 152
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.74 E-value=5.5e-05 Score=47.28 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003315 657 VTYTMMIHGYCKINCLREARDVFNDMKQRGITP 689 (831)
Q Consensus 657 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 689 (831)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.71 E-value=0.011 Score=57.26 Aligned_cols=183 Identities=13% Similarity=0.070 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhH---HHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSC---NYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI 245 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (831)
++......+..+...|++++|+..|+++....+.+ ..+. ..++.++.+.+++++|...|+++++.........|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 44455567777788899999999999988875442 3332 4566778888999999999999887542211223333
Q ss_pred HHHHHHh--cC---------------C---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003315 246 VIKALCK--KG---------------S---MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEAD 305 (831)
Q Consensus 246 l~~~~~~--~g---------------~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (831)
.+.+.+. .+ + ..+|++.|+++++. -|+..- ..+|...+..+...=
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~y-------------a~~A~~rl~~l~~~l 174 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQY-------------TTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChh-------------HHHHHHHHHHHHHHH
Confidence 3333321 11 1 23444555555543 343321 122322222221110
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 306 IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG--VVPDVYAYSALISGYCKFGKINKALLLHHEM 371 (831)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~ 371 (831)
..--..+++.|.+.|.+..|..-++.+.+.= ..........++.+|...|..++|......+
T Consensus 175 ----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 175 ----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred ----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0011235566666777777777777766541 1112334445566666666666666655544
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.00057 Score=55.37 Aligned_cols=95 Identities=19% Similarity=0.165 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
+..++..+...|++++|+..++++.+..+. +..++..+...+...+++++|.+.|+...+.. +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 456777777788888888888887776533 44566677777777888888888888777654 3344567777777777
Q ss_pred cCChHHHHHHHHHHHhC
Q 003315 253 KGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~ 269 (831)
.|++++|...+++..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 78888888877776643
No 155
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.68 E-value=0.00097 Score=57.63 Aligned_cols=97 Identities=10% Similarity=-0.091 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
.+....++..+...|++++|..+|+.+...+|. +..-|..|+-++-..|++++|+..|.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-------------------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-------------------SFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444445555555566666666666655554332 4445556666666666666666666666
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 197 NRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
...++. |+..+-.+..++...|+.+.|.+.|+..+.
T Consensus 96 ~~L~~d-dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 96 AQIKID-APQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HhcCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555532 555555566666666666666666655553
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.65 E-value=0.001 Score=68.66 Aligned_cols=99 Identities=14% Similarity=-0.025 Sum_probs=80.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
..+..+...|++++|+..|+++++.++. +...+..+..++.+.|++++|+..++++++.. +.+...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 4456677889999999999999988754 77788888889999999999999999988764 446778888888888999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFA 277 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~ 277 (831)
++++|+..|++.++. .|+...
T Consensus 85 ~~~eA~~~~~~al~l--~P~~~~ 105 (356)
T PLN03088 85 EYQTAKAALEKGASL--APGDSR 105 (356)
T ss_pred CHHHHHHHHHHHHHh--CCCCHH
Confidence 999999999998876 344433
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.61 E-value=0.00098 Score=53.95 Aligned_cols=87 Identities=24% Similarity=0.135 Sum_probs=33.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
..+...|++++|+..++++.+.. +.+...+..+...+...+++++|.+.++...... +.+..++..++..+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 33334444444444444443321 1122233333333333444444444444433332 222233334444444444444
Q ss_pred HHHHHHHHH
Q 003315 328 KAECVLLHM 336 (831)
Q Consensus 328 ~A~~~~~~~ 336 (831)
+|...+...
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 444444443
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.60 E-value=0.012 Score=57.02 Aligned_cols=57 Identities=11% Similarity=-0.049 Sum_probs=35.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003315 281 CIEGLCMNGMLDLGYELLLKWEEA--DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHME 337 (831)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (831)
+..-|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345566667777777777766664 233345556666777777777777776665543
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.58 E-value=0.0014 Score=56.57 Aligned_cols=87 Identities=13% Similarity=-0.031 Sum_probs=50.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH
Q 003315 526 IIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDN 602 (831)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 602 (831)
+...+...|++++|+++|+-+...+|.. |-.|+.++...|++++|+..|..+...++. |+..+-.++.++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCH
Confidence 3334556667777777766666666554 555666666666666666666666655543 555555555555555555
Q ss_pred HHHHHHHHHHH
Q 003315 603 NNALKLFKTMI 613 (831)
Q Consensus 603 ~~a~~~~~~~~ 613 (831)
+.|.+-|+.++
T Consensus 120 ~~A~~aF~~Ai 130 (157)
T PRK15363 120 CYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 160
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.56 E-value=0.12 Score=52.35 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=48.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc-----cHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHH-
Q 003315 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKS-----SCNKLITNLL----ILRDNNNALKLFKTMITLNAEPSKSM- 623 (831)
Q Consensus 554 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~- 623 (831)
+..++....+.++..+|.+.+.-+.-.++..... +-..+-...+ ..-+...-+.+|+.+...++..-.-+
T Consensus 301 F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh 380 (549)
T PF07079_consen 301 FGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVH 380 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 5556666677777777777776665554332110 0011111111 11223344556666655432211111
Q ss_pred -HHHHHHHHHhcCC-HHHHHHHHHHHHHC
Q 003315 624 -YDKLIGALCQAEE-MEQAQLVFNVLVDK 650 (831)
Q Consensus 624 -~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 650 (831)
...-..-+|+.|. -++|..++..+++-
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 1112344777777 67788888888764
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.0045 Score=61.90 Aligned_cols=166 Identities=11% Similarity=0.079 Sum_probs=75.7
Q ss_pred HHHHhccCChhHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhc
Q 003315 89 EKLYSLRKEPKIALSFFEQLKR----SGFS-HNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCG 163 (831)
Q Consensus 89 ~~l~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (831)
...+...|+++.|...|..+.. .+.. .....|..++.++... ++++|...+.+.++.... .
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~-------------~ 107 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE-------------A 107 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH-------------C
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh-------------c
Confidence 4566677888888888887652 1111 1233344444444333 666666666655543110 0
Q ss_pred CCCcchHHHHHHHHHHHHHc-CChhHHHHHHHHHHHc----CCC-cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003315 164 EGSTLLTRLSDAMIKAYVSV-GMFDEGIDILFQINRR----GFV-WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS 237 (831)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 237 (831)
..+..-...+..++..|-.. |++++|++.|.++.+. +.. .-...+..++..+.+.|++++|.++|+++......
T Consensus 108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 00111234555666666655 6666666666665432 100 01123344555555666666666666655543211
Q ss_pred CC-----hh-hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 238 LN-----EY-TYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 238 ~~-----~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
.+ +. .+...+-.+...|+...|.+.|++...
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 11 111222233445555555555555543
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.0046 Score=61.86 Aligned_cols=26 Identities=8% Similarity=-0.064 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHH
Q 003315 120 YAAIVRILCCCGWQKKLESMLLELVR 145 (831)
Q Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~ 145 (831)
|...+..+-..|++++|...|.+..+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34444455556666666666665443
No 163
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.17 Score=53.93 Aligned_cols=154 Identities=15% Similarity=0.157 Sum_probs=88.8
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCChHH
Q 003315 323 QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTN----CGVLSVILKGLCQKGMASA 398 (831)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~ 398 (831)
-|++++|++++-++.++ | ..|..+.+.|+|-...++++.- |-..| ...+..+...+.....+++
T Consensus 747 ~g~feeaek~yld~drr----D-----LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~ 814 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR----D-----LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEE 814 (1189)
T ss_pred hcchhHhhhhhhccchh----h-----hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888877776654 2 2355666777777766655431 11111 2345566666666666666
Q ss_pred HHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHH
Q 003315 399 TIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKE 478 (831)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 478 (831)
|.+.|..-... ...+.++.+..++++-+.+-+.+.+ +....-.+..++...|.-++|.+.+-+.-
T Consensus 815 A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s- 879 (1189)
T KOG2041|consen 815 AAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS- 879 (1189)
T ss_pred HHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc-
Confidence 66666543221 1245555555555554444444332 45556667777788888888777664321
Q ss_pred cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 003315 479 MGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYM 511 (831)
Q Consensus 479 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 511 (831)
. | ...+..|...+++.+|.++-+..
T Consensus 880 --~-p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 880 --L-P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred --C-c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1 23456677777777777766554
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.55 E-value=0.0034 Score=52.40 Aligned_cols=108 Identities=21% Similarity=0.114 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC----hhhHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS--ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN----EYTYVI 245 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ 245 (831)
+...++.++-..|+.++|+.+|++.+..|.... ...+-.+...+...|++++|+.++++..... |+ ......
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHH
Confidence 455778888999999999999999999875533 3456667788899999999999999988642 33 222223
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGL 285 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 285 (831)
+..++...|+.++|++.+-.... ++...|.--|..|
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33456788999999998877664 2333444444444
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.54 E-value=0.0037 Score=57.30 Aligned_cols=95 Identities=12% Similarity=-0.062 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS--ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
....+..++..+...|++++|+..|+++++.++.+. ...+..++.++.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 456788999999999999999999999987654332 4578888899999999999999999988753 3456677777
Q ss_pred HHHHHhcCChHHHHHHHH
Q 003315 247 IKALCKKGSMQEAVEVFL 264 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~ 264 (831)
...+...|+...+..-++
T Consensus 113 g~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHcCChHhHhhCHH
Confidence 778888777555444433
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.53 E-value=0.00021 Score=56.15 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=40.7
Q ss_pred cCChhHHHHHHHHHHHcCCC-cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003315 183 VGMFDEGIDILFQINRRGFV-WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVE 261 (831)
Q Consensus 183 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (831)
.|+++.|+.+++++.+..+. ++...+..+..++.+.|++++|..+++. .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666655432 1233334455666666666666666655 2221 1222333344555566666666666
Q ss_pred HHHH
Q 003315 262 VFLE 265 (831)
Q Consensus 262 ~~~~ 265 (831)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.0011 Score=62.93 Aligned_cols=103 Identities=12% Similarity=0.064 Sum_probs=84.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.-+.-.++.++|++|+..|.++++..+. |...|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccC
Confidence 3344567889999999999999999865 77777778889999999999999999888753 233568999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTC 281 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l 281 (831)
++++|++.|++.++. .|+..+|-.=
T Consensus 164 k~~~A~~aykKaLel--dP~Ne~~K~n 188 (304)
T KOG0553|consen 164 KYEEAIEAYKKALEL--DPDNESYKSN 188 (304)
T ss_pred cHHHHHHHHHhhhcc--CCCcHHHHHH
Confidence 999999999998875 6777766443
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.50 E-value=0.045 Score=48.09 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=43.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhc
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLNEYTYVIVIKALCKK 253 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 253 (831)
.|+.+....|++.+|...|++.+.--+..|......+.++....++..+|...++.+-+... ..++.+...+.+.+...
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~ 173 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQ 173 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhc
Confidence 44445555555555555555544332333444444444555555555555555555444210 01122333444444455
Q ss_pred CChHHHHHHHHHHHh
Q 003315 254 GSMQEAVEVFLEMEK 268 (831)
Q Consensus 254 g~~~~A~~~~~~m~~ 268 (831)
|++.+|...|+....
T Consensus 174 g~~a~Aesafe~a~~ 188 (251)
T COG4700 174 GKYADAESAFEVAIS 188 (251)
T ss_pred CCchhHHHHHHHHHH
Confidence 555555555555443
No 169
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.49 E-value=0.002 Score=51.33 Aligned_cols=87 Identities=14% Similarity=0.302 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCC
Q 003315 660 TMMIHGYCKINCLREARDVFNDMKQRGI-TPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIR 738 (831)
Q Consensus 660 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 738 (831)
...|..+...|++.....+|+.+++.|+ .|+..+|+.++.+..+..+.+ ..-....-+.+.++++|...+++
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~-------~~ie~kl~~LLtvYqDiL~~~lK 101 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS-------EDIENKLTNLLTVYQDILSNKLK 101 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc-------hhHHHHHHHHHHHHHHHHHhccC
Confidence 3455566666999999999999999999 899999999999888744321 11123456677888888888888
Q ss_pred CCHHHHHHHHHHHHh
Q 003315 739 PDVISYTVLIAKLCN 753 (831)
Q Consensus 739 p~~~~~~~l~~~~~~ 753 (831)
|+..+|+.++..+.+
T Consensus 102 P~~etYnivl~~Llk 116 (120)
T PF08579_consen 102 PNDETYNIVLGSLLK 116 (120)
T ss_pred CcHHHHHHHHHHHHH
Confidence 888888888876654
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.49 E-value=0.00037 Score=52.17 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=52.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 752 CNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLER 819 (831)
Q Consensus 752 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~ 819 (831)
.+.|++++|+++|+++.+. .+-+..++..++.+|.+.|++++|.++++++.. ..|+...+..+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHHh
Confidence 4679999999999999875 344688888999999999999999999999988 6788777666543
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.49 E-value=0.0026 Score=65.75 Aligned_cols=93 Identities=12% Similarity=0.008 Sum_probs=73.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003315 557 MINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEE 636 (831)
Q Consensus 557 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 636 (831)
.+..+...|++++|+++|+++++..+. +...+..+..++...|++++|+..+++++..+ +.+...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 355666778888888888888887765 66777788888888888888888888888765 3456677778888888888
Q ss_pred HHHHHHHHHHHHHCC
Q 003315 637 MEQAQLVFNVLVDKG 651 (831)
Q Consensus 637 ~~~A~~~~~~~~~~~ 651 (831)
+++|...|+++++.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888888763
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.49 E-value=0.0048 Score=56.51 Aligned_cols=84 Identities=14% Similarity=0.035 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003315 207 SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN--EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG 284 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (831)
.+..++..+...|++++|...|++..+....+. ...+..+...+.+.|++++|+..++++.+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444555555555555555555554321111 2344445555555555555555555555431 1123333344444
Q ss_pred HHhcCCh
Q 003315 285 LCMNGML 291 (831)
Q Consensus 285 ~~~~~~~ 291 (831)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 4444443
No 173
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.088 Score=55.91 Aligned_cols=206 Identities=15% Similarity=0.098 Sum_probs=124.1
Q ss_pred CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003315 202 VWSICSCNYFMNQLVECGKVDMALAVYQHLKRL-GLSL--------NEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVT 272 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 272 (831)
.|.+..|..+.......-..+-|+..|-+.... |++. +...-.+=+ -.--|++++|.++|-+|-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhhhhhhccchhh--
Confidence 467777877777666666677777766554321 1110 011111111 223588999999988876542
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003315 273 PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA-DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSAL 351 (831)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 351 (831)
..|..+.+.||+-...++++.--.. +-..-..+++.+...+.....+++|.+.+..-.. . ...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhH
Confidence 3456667778877666655431110 0011145788888888888888888888866432 1 224
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCH
Q 003315 352 ISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEV 431 (831)
Q Consensus 352 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 431 (831)
+.++....++++-..+...+.+ +...+-.+...+...|.-++|.+.|-.... + ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---p------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL---P------KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC---c------HHHHHHHHHHHHH
Confidence 5566666666665555444433 445566778888888888888877654321 1 1355667777888
Q ss_pred HHHHHHHHHH
Q 003315 432 EKAMILFKEM 441 (831)
Q Consensus 432 ~~A~~~~~~~ 441 (831)
.+|.++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 8888776654
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0023 Score=63.65 Aligned_cols=128 Identities=10% Similarity=0.147 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG-LCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWF 320 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (831)
+|..+++...+.+..+.|.++|.++.+.+ .-+...|...+.. +...++.+.|..+|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666666666666665432 2233334444333 22244555566666666654 355666666666666
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 321 CDQNKLEKAECVLLHMEKQGVVPDV----YAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
.+.++.+.|+.+|++.... .|.. ..|...+..=.+.|+++.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6667777777777766654 2222 3666666666666666666666666655
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.48 E-value=0.033 Score=48.86 Aligned_cols=129 Identities=16% Similarity=0.007 Sum_probs=63.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCChhhHHHH
Q 003315 238 LNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADI-PLSAFAYTVV 316 (831)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 316 (831)
|++..-..|..+..+.|++.+|...|++...--.-.|......+.++....+++..|...++++-+.+. .-++.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 444444455555555555555555555554422234444444555555555555555555555544320 0123344555
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003315 317 IRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLH 368 (831)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 368 (831)
.+.+...|++++|+..|+..... -|+...-......+.++|+.+++..-+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 56666666666666666666654 233332222333344555555444333
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.47 E-value=0.00014 Score=44.18 Aligned_cols=29 Identities=34% Similarity=0.830 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDRG 771 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 771 (831)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665544
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.46 E-value=0.0034 Score=57.30 Aligned_cols=96 Identities=11% Similarity=-0.067 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc--ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW--SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
....+..++..+...|++++|+..|++++...+.+ ...++..+..++...|++++|+..++...+.. +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 34566788888888899999999998887664332 23467778888888888888888888887653 3344556666
Q ss_pred HHHHH-------hcCChHHHHHHHHH
Q 003315 247 IKALC-------KKGSMQEAVEVFLE 265 (831)
Q Consensus 247 ~~~~~-------~~g~~~~A~~~~~~ 265 (831)
...+. +.|+++.|+..+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66665 55665544444433
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.45 E-value=0.00024 Score=55.88 Aligned_cols=20 Identities=20% Similarity=0.492 Sum_probs=8.6
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 003315 246 VIKALCKKGSMQEAVEVFLE 265 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~ 265 (831)
+...+.+.|++++|.+++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.45 E-value=0.00016 Score=43.91 Aligned_cols=30 Identities=50% Similarity=1.041 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQRGI 687 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 687 (831)
+||+++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 678888888888888888888888877653
No 180
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.43 E-value=0.15 Score=50.47 Aligned_cols=224 Identities=13% Similarity=0.093 Sum_probs=121.7
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHH
Q 003315 94 LRKEPKIALSFFEQLKRSGFSHNLCTYAAIVR--ILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTR 171 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (831)
.-..|..+.++|...++. .-|..+.. +....|+...|..+-.+.-..-..+. .+-
T Consensus 65 iw~sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~llssDq-----------------epL 121 (531)
T COG3898 65 IWESPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQ-----------------EPL 121 (531)
T ss_pred HHhCcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccc-----------------hHH
Confidence 335788888988877632 12333433 33456676667666554322211111 122
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
+...-.+.-.-.|++++|.+-|+.|+... ..-......|.-.--+.|..+.|.+.-++.-... +.-...+...+...|
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~ 199 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARC 199 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHH
Confidence 23334445566799999999999887631 1111122233333346788888888888776543 334567888889999
Q ss_pred hcCChHHHHHHHHHHHhCC-CCCCHHH--HHHHHHH--HH-hcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcC
Q 003315 252 KKGSMQEAVEVFLEMEKAG-VTPNAFA--YSTCIEG--LC-MNGMLDLGYELLLKWEEADIPLS-AFAYTVVIRWFCDQN 324 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~-~~p~~~~--~~~l~~~--~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 324 (831)
..|+++.|+++.+.-.+.. +.++..- -..|+.+ -. -.-+...|...-.+..+. .|+ ...-..-.+.+.+.|
T Consensus 200 ~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 200 AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDG 277 (531)
T ss_pred hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhcc
Confidence 9999999999998766542 2344321 1112211 11 112334444443333332 222 122233445566666
Q ss_pred CHhHHHHHHHHHHHCCCCCC
Q 003315 325 KLEKAECVLLHMEKQGVVPD 344 (831)
Q Consensus 325 ~~~~A~~~~~~~~~~~~~p~ 344 (831)
+..++-.+++.+-+..+.|+
T Consensus 278 ~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 278 NLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred chhhhhhHHHHHHhcCCChH
Confidence 66666666666666544444
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.0084 Score=50.06 Aligned_cols=105 Identities=20% Similarity=0.092 Sum_probs=60.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---ChhhHHHHHHHH
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPN--AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPL---SAFAYTVVIRWF 320 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 320 (831)
+..++-..|+.++|+..|++..+.|+... ...+..+...+...|++++|..++++..... |. +......+...+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 44555566777777777777776665433 2345555566667777777777777666542 22 333344445566
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003315 321 CDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGY 355 (831)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 355 (831)
...|+.++|.+.+-..... +...|..-|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAE----TLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 6677777777666554432 333444444444
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.41 E-value=0.00062 Score=50.34 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=52.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003315 747 LIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDD 811 (831)
Q Consensus 747 l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~ 811 (831)
+...+.+.|++++|++.|+++++.. +-+...+..++.++...|++++|...++++++ ..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 4567889999999999999999863 33578899999999999999999999999988 67765
No 183
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.41 E-value=0.0018 Score=66.78 Aligned_cols=120 Identities=10% Similarity=0.087 Sum_probs=77.6
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 003315 585 KKSSCNKLITNLLILRDNNNALKLFKTMITL--NAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMM 662 (831)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 662 (831)
+...+..++..+....+.+++..++-+.... ....-..|..++++.|.+.|..+++..+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4445555555555555666666666555543 11122334456777777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 003315 663 IHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKI 704 (831)
Q Consensus 663 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 704 (831)
++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777776666666666666666666654
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.39 E-value=0.0021 Score=66.23 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRG--FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
++.....++..+....+.+++..++-+..... ...-..+..++++.|.+.|..+.++.++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 33334445555555555666666665555431 1122334456666666677667777666666666666777777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMN 288 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (831)
|+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777666666555455555555555554443
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.36 E-value=0.0012 Score=49.55 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC-ChhHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVG-MFDEGIDILF 194 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~ 194 (831)
++.+|..++.++...|++++|...|.++++.+|. ++.++..++.+|...| ++++|+..++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-------------------~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-------------------NAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-------------------HHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------------CHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 3445555555555555555555555555555333 3445555555555555 4555555555
Q ss_pred HHHHc
Q 003315 195 QINRR 199 (831)
Q Consensus 195 ~~~~~ 199 (831)
++++.
T Consensus 63 ~al~l 67 (69)
T PF13414_consen 63 KALKL 67 (69)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55543
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.033 Score=51.81 Aligned_cols=132 Identities=14% Similarity=0.029 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 003315 207 SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTC----- 281 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----- 281 (831)
+.+.+++.+...|++.-....+.++++...+.++..-..|++.-.+.|+.+.|...|++..+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 456677777777888888888888887665667777788888888888888888888876654323333333333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 282 IEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
...+.-.+++..|...+.++...+ +.++..-|.-+-+..-.|+..+|.+.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 234555667777777777766664 445555555444555567777777777777765
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.35 E-value=0.004 Score=61.92 Aligned_cols=139 Identities=12% Similarity=0.131 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcC
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQRG-ITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMG 736 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~ 736 (831)
+|..+++...+.+..+.|..+|++..+.+ +..+.....+++.-++ .++...|.++|+...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~----------------~~d~~~A~~Ife~glk~- 65 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC----------------NKDPKRARKIFERGLKK- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT----------------CS-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----------------CCCHHHHHHHHHHHHHH-
Confidence 46666666666666777777777766432 1223333333333322 24455577777776643
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 737 IRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDT---VTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT 813 (831)
Q Consensus 737 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 813 (831)
+..+...|...++.+.+.|+.+.|..+|++.+.. +.++. .+|..++.-=.+.|+.+.+.++.+++.+ ..|+...
T Consensus 66 f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~ 142 (280)
T PF05843_consen 66 FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNS 142 (280)
T ss_dssp HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-H
T ss_pred CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhH
Confidence 3455667788888888888888888888888865 44333 4788888888888888888888888877 5555444
Q ss_pred HHH
Q 003315 814 KSS 816 (831)
Q Consensus 814 ~~~ 816 (831)
+..
T Consensus 143 ~~~ 145 (280)
T PF05843_consen 143 LEL 145 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.013 Score=56.32 Aligned_cols=114 Identities=15% Similarity=0.029 Sum_probs=93.9
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHc---CChhHHH
Q 003315 114 SHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSV---GMFDEGI 190 (831)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~ 190 (831)
+.|.+.|..+++++...|+...|...|...++..++ ++..+..++.++... .+-.++.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-------------------n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-------------------NPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHhcCCcccHHHH
Confidence 348999999999999999999999999999998665 556677777777544 3467899
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 191 DILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
.+|+++++.++. |+.+...+...+...|++.+|...|+.|++.. |....+..++..
T Consensus 214 ~ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 214 ALLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 999999999855 89999999999999999999999999999864 444445555543
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.34 E-value=0.026 Score=53.23 Aligned_cols=69 Identities=12% Similarity=0.014 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+......+..+...|++.+|...|..++...|. ++..+.+...++.++.+.|++++|+..+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~----------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN----------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444455556666677777777777776665332 2334456666677777777777777777776
Q ss_pred HHcCC
Q 003315 197 NRRGF 201 (831)
Q Consensus 197 ~~~~~ 201 (831)
++.-|
T Consensus 69 i~~yP 73 (203)
T PF13525_consen 69 IKLYP 73 (203)
T ss_dssp HHH-T
T ss_pred HHHCC
Confidence 66543
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.30 E-value=0.00088 Score=50.28 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEP-DTVTYTALLCGYLAKG-DLDRAIALVDEMSV 804 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 804 (831)
+...|..++..+...|++++|++.|++.++. .| ++.+|..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567888999999999999999999999985 45 5788999999999999 79999999999887
No 191
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.29 E-value=0.0065 Score=55.43 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 207 SCNYFMNQLVECGKVDMALAVYQHLKRLGLSL--NEYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
.+..++..+...|++++|+..|++.......+ ...++..+...+...|++++|++.+++..+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444555555555555555554332111 112444455555555555555555555544
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.27 E-value=0.0012 Score=48.78 Aligned_cols=58 Identities=24% Similarity=0.246 Sum_probs=36.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 176 MIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
++..+...|++++|+..|+++++..+. +..++..+..++...|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455566666666666666666666533 5566666666666666666666666666553
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.26 E-value=0.012 Score=63.68 Aligned_cols=139 Identities=10% Similarity=0.018 Sum_probs=90.2
Q ss_pred CCCcChhhHHHHHHHHHHc--C---ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CChHHHHHHHHHH
Q 003315 200 GFVWSICSCNYFMNQLVEC--G---KVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK--------GSMQEAVEVFLEM 266 (831)
Q Consensus 200 ~~~~~~~~~~~l~~~~~~~--~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m 266 (831)
..+.+..+|...+++.... + ..+.|..+|++.++.. |.....|..+..++... ++...+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3455777777777664432 2 2567888888888754 22344454444333221 1234455555554
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 003315 267 EKA-GVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV 341 (831)
Q Consensus 267 ~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 341 (831)
... ....+...|..+.-.....|++++|...++++++.+ |+...|..+...+...|+.++|.+.+++....++
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 442 123455667777666667788888888888888875 4677888888888888999999888888887643
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.19 E-value=0.019 Score=62.10 Aligned_cols=137 Identities=17% Similarity=0.100 Sum_probs=71.7
Q ss_pred CCCCCHHHHHHHHHHHHc--CC---ChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC--
Q 003315 112 GFSHNLCTYAAIVRILCC--CG---WQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVG-- 184 (831)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 184 (831)
..+.|+..|....+.... .+ ....|.++|.++++.+|+ ...++..++.++....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-------------------~a~a~A~la~~~~~~~~~ 392 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-------------------FTYAQAEKALADIVRHSQ 392 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-------------------cHHHHHHHHHHHHHHHhc
Confidence 345678888777666443 22 356788899999998665 3334444444332221
Q ss_pred ------ChhHHHHHHHHHHHcC-CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 003315 185 ------MFDEGIDILFQINRRG-FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQ 257 (831)
Q Consensus 185 ------~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (831)
+...+.+..++..... ...+..++..+.-.....|++++|...+++.+... |+...|..+...+...|+.+
T Consensus 393 ~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 393 QPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNR 470 (517)
T ss_pred CCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHH
Confidence 1222233333322211 12233444444444444555666666666655543 45555555555555566666
Q ss_pred HHHHHHHHHHhC
Q 003315 258 EAVEVFLEMEKA 269 (831)
Q Consensus 258 ~A~~~~~~m~~~ 269 (831)
+|.+.++++...
T Consensus 471 eA~~~~~~A~~L 482 (517)
T PRK10153 471 LAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHhc
Confidence 666666555543
No 195
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.18 E-value=0.32 Score=49.02 Aligned_cols=79 Identities=24% Similarity=0.280 Sum_probs=38.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH
Q 003315 422 VDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAV 501 (831)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 501 (831)
+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.+.-.. +-.+..|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 334444555555555544432 13555555555555555555544443221 11345555555555555555
Q ss_pred HHHHHHHHH
Q 003315 502 QKAFDLLNY 510 (831)
Q Consensus 502 ~~a~~~~~~ 510 (831)
.+|..++.+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555555444
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.18 E-value=0.08 Score=55.66 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=50.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHh
Q 003315 484 DIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCK 563 (831)
Q Consensus 484 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 563 (831)
+..+...+..-+-+...+..|.++|.+|-. ...+++.....+++++|..+-++..+.-++.|..-..-++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 334444444445555566667777766642 23455566677777777777777666666666666666666
Q ss_pred cCCHHHHHHHHH
Q 003315 564 TGHTKEAFQLFM 575 (831)
Q Consensus 564 ~g~~~~A~~~~~ 575 (831)
+.++++|.+.|.
T Consensus 817 ~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 817 NDRFEEAQKAFH 828 (1081)
T ss_pred hhhHHHHHHHHH
Confidence 666666665543
No 197
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.17 E-value=0.34 Score=49.06 Aligned_cols=128 Identities=17% Similarity=0.242 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcC
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQRG-ITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMG 736 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~ 736 (831)
.|...++.-.+..-.+.|..+|-+..+.| +.+++..+++++.-++. ++...|.++|+-=..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~----------------~d~~ta~~ifelGl~-- 460 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT----------------GDRATAYNIFELGLL-- 460 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc----------------CCcchHHHHHHHHHH--
Confidence 34444444444444555555555555544 34444555555544432 444445555443111
Q ss_pred CCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 737 IRPDVISY-TVLIAKLCNTQNLEDGITVFNEISDRGLEPD--TVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 737 ~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
.-||...| +..+.-+.+-++-+.|..+|++.+++ +..+ ..+|..++.-=..-|+...+..+=+.|..
T Consensus 461 ~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 461 KFPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 12333332 33444455555555555555554443 3323 34455555555555555555555555544
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.17 E-value=0.004 Score=61.31 Aligned_cols=233 Identities=16% Similarity=0.089 Sum_probs=130.6
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH--H--Hc
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI--N--RR 199 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~--~~ 199 (831)
...|++.|+.+.-.+.|...++...+ +......+|..|+.+|.-.++|++|++....= + ..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe---------------Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l 88 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE---------------DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL 88 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch---------------HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh
Confidence 45688899999999999988887433 12224568999999999999999999886541 1 11
Q ss_pred CC-CcChhhHHHHHHHHHHcCChhHHHHHHHHHH----hcCCC-CChhhHHHHHHHHHhcCC------------------
Q 003315 200 GF-VWSICSCNYFMNQLVECGKVDMALAVYQHLK----RLGLS-LNEYTYVIVIKALCKKGS------------------ 255 (831)
Q Consensus 200 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~------------------ 255 (831)
|- .....+...+.+.+--.|.+++|+-...+-+ +.|-. .....+..+...|...|+
T Consensus 89 gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~ 168 (639)
T KOG1130|consen 89 GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVT 168 (639)
T ss_pred cchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHH
Confidence 21 1133455667777888889988876654432 22211 123355566777766553
Q ss_pred --hHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCC-CCChhhHHHHHHHHHhc
Q 003315 256 --MQEAVEVFLEMEKA----GV-TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEE----ADI-PLSAFAYTVVIRWFCDQ 323 (831)
Q Consensus 256 --~~~A~~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~ 323 (831)
++.|.+.|.+=++. |- -....+|..|...|.-.|+++.|+...+.-+. .|- ......+..+..+++-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 23344444432221 10 01123455555555566777777666544322 111 11234555666666666
Q ss_pred CCHhHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 324 NKLEKAECVLLHMEK----QGV-VPDVYAYSALISGYCKFGKINKALLLHHEM 371 (831)
Q Consensus 324 g~~~~A~~~~~~~~~----~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~ 371 (831)
|+++.|.+.++.... .|- .....+..+|...|.-..++++|+..+.+-
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 676666666554322 111 112233444555555556666666655543
No 199
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.28 Score=53.68 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=113.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAF--AYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRW 319 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (831)
....-+..+.+...++-|+.+.+. .+..++.. ......+-+.+.|++++|...|-+-+..- .|. .++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHH
Confidence 344556667777788888777654 23233322 23333445667888888887776655442 222 35666
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHH
Q 003315 320 FCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASAT 399 (831)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 399 (831)
|....+..+--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 67777778888888999888876 66777788999999999888877766544 2322 11234556666666666666
Q ss_pred HHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 400 IKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
.-+-..... +... +--.+...+++++|++.+..+.
T Consensus 483 ~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcCC
Confidence 555444333 2222 2233445688999998887764
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.10 E-value=0.0016 Score=48.69 Aligned_cols=52 Identities=27% Similarity=0.271 Sum_probs=29.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 287 MNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
+.|++++|.+.|+++.... |.+..++..++.+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455556666666555553 445555556666666666666666666666554
No 201
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.09 E-value=0.012 Score=47.13 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGY 355 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~ 355 (831)
+.+.+++.|...+++|+..+|+.++..+
T Consensus 87 ~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 87 NLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.12 Score=48.21 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH--
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI-- 247 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-- 247 (831)
..+.+.++..+.-.|.+.-.+.++..+++.+++.++.....+++.-...|+.+.|...|+++.+..-..|..+.+.++
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 346678888888999999999999999998877788888999999999999999999999877543344444444333
Q ss_pred ---HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003315 248 ---KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV 315 (831)
Q Consensus 248 ---~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (831)
..|.-.+++..|...+.+....+ +.|....|.-.-++.-.|+...|.+.++.++... |.+.+.++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es 324 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHES 324 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhhh
Confidence 34556788999999999888765 4566666776667777899999999999999874 44444443
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.02 E-value=0.11 Score=48.92 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV--WSICSCNYFMNQLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
++......+..+...|++++|+..|+.+....+. --..+...++.++.+.|+++.|...|+++++.-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4556678888889999999999999999876433 223456677888999999999999999988753
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.90 E-value=0.021 Score=55.72 Aligned_cols=95 Identities=15% Similarity=0.017 Sum_probs=56.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCChhhHHHHHHHH
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWS--ICSCNYFMNQLVECGKVDMALAVYQHLKRLGL--SLNEYTYVIVIKAL 250 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~ 250 (831)
.....+.+.|++++|+..|+.+++..+... ..++..++.+|...|++++|...|+.+.+... +.....+..++..+
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~ 227 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIM 227 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHH
Confidence 333333555677777777777666643321 24556666777777777777777777665320 11233444455556
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 003315 251 CKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~ 269 (831)
...|+.++|.+.|+++.+.
T Consensus 228 ~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 228 QDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6677777777777777664
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.84 E-value=0.039 Score=53.83 Aligned_cols=62 Identities=13% Similarity=-0.017 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--cChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFV--WSICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
++..++.+|...|++++|+..|+.+++..+. ....++..++.++...|+.++|..+|+.+++
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444444444433211 1122233333444444455555555544444
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.82 E-value=0.0074 Score=45.79 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=55.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 749 AKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSL 817 (831)
Q Consensus 749 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l 817 (831)
..|.+.+++++|++.++.++.. .+.++..|...+.++.+.|++++|.+.+++..+ ..|+......+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHHHHH
Confidence 4678999999999999999985 233577888899999999999999999999998 67877765543
No 207
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.77 E-value=0.78 Score=46.77 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=40.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003315 561 YCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDK 626 (831)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 626 (831)
+..+|++.++.-.-..+.+- .|++.++..++-++...+++++|+.++..+ +|+..+++.
T Consensus 472 Lysqgey~kc~~ys~WL~~i--aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKI--APSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 34567777776555444443 457788888888888888888888887754 667666664
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.76 E-value=0.06 Score=56.56 Aligned_cols=214 Identities=17% Similarity=0.180 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCC----CCcchHHHHHHHHHhcCCHHHHHHHH
Q 003315 433 KAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHK----PDIITYNVLAGAFAQYGAVQKAFDLL 508 (831)
Q Consensus 433 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~ 508 (831)
+-+.-+++++++|..|+... +...++.+|++.+|-++|.+--..+-. -|...| -..+-+...|..++-..+.
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~aQE~~~~g~~~eKKmL~ 693 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYAQEFLGSGDPKEKKMLI 693 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHHHHHhhcCChHHHHHHH
Confidence 34444566777777676543 334456677777777777643111000 011111 1223333444444433333
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc
Q 003315 509 NYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSS 588 (831)
Q Consensus 509 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 588 (831)
++--+ ...+..--.+..+++...|+.++|..+.- .+|-.+-+.++-+++... +..+
T Consensus 694 RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~------------------d~gW~d~lidI~rkld~~----ere~ 749 (1081)
T KOG1538|consen 694 RKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICG------------------DHGWVDMLIDIARKLDKA----EREP 749 (1081)
T ss_pred HHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhh------------------cccHHHHHHHHHhhcchh----hhhH
Confidence 32111 00011111233445556677776665431 122222222222222111 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-----------
Q 003315 589 CNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLV----------- 657 (831)
Q Consensus 589 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----------- 657 (831)
+..+..-+.+...+.-|.++|.+|-.. ..++......+++++|..+-+...+. .||+.
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhh
Confidence 344444444444455555555544321 12334444555555555554444332 22221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
-+.---.+|.+.|+-++|..+++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1233345667778888888888887643
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.71 E-value=0.84 Score=46.36 Aligned_cols=421 Identities=10% Similarity=0.073 Sum_probs=212.7
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHH
Q 003315 114 SHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDIL 193 (831)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 193 (831)
+-|.-+|..+++-|...|..++..+++.++..- ++..+++|..-+..-...+++.....+|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-------------------fp~~~~aw~ly~s~ELA~~df~svE~lf 99 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-------------------FPIMEHAWRLYMSGELARKDFRSVESLF 99 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-------------------CccccHHHHHHhcchhhhhhHHHHHHHH
Confidence 448889999999999999999999988885442 4557788989998888899999999999
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHHcC-----C-hhHHHHHHHHHHh-cCCCCC-hhhHHHHHHHHH---hcC------Ch
Q 003315 194 FQINRRGFVWSICSCNYFMNQLVECG-----K-VDMALAVYQHLKR-LGLSLN-EYTYVIVIKALC---KKG------SM 256 (831)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~~-----~-~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---~~g------~~ 256 (831)
.+.++.. .+...|...+.-..+.. + .....+.|+-... .++.|. ...|+..+..+- ..| +.
T Consensus 100 ~rCL~k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqri 177 (660)
T COG5107 100 GRCLKKS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRI 177 (660)
T ss_pred HHHHhhh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHH
Confidence 9988864 34555655554333322 1 1223344544443 344443 234554443322 223 34
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHH------HHHHH-----HH--hcCChhHHHHHHHHHHHC--CC----CCChhhHHHHH
Q 003315 257 QEAVEVFLEMEKAGVTPNAFAYS------TCIEG-----LC--MNGMLDLGYELLLKWEEA--DI----PLSAFAYTVVI 317 (831)
Q Consensus 257 ~~A~~~~~~m~~~~~~p~~~~~~------~l~~~-----~~--~~~~~~~a~~~~~~~~~~--~~----~~~~~~~~~l~ 317 (831)
+.....+.+|+...+..=...|+ .=+.- +. ...-+-.|...++++... |+ +.+..+++...
T Consensus 178 d~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~ 257 (660)
T COG5107 178 DKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAA 257 (660)
T ss_pred HHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccc
Confidence 55666677776532111011111 11111 11 112234455566655432 22 22223333221
Q ss_pred H-----------HHHhcC-----CH--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 003315 318 R-----------WFCDQN-----KL--EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTN 379 (831)
Q Consensus 318 ~-----------~~~~~g-----~~--~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 379 (831)
+ .-...| +. ...--++++.... +.-....|.---.-+...++-++|+..... |++..
T Consensus 258 r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~s 332 (660)
T COG5107 258 RTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMS 332 (660)
T ss_pred ccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCC
Confidence 1 000000 00 0000011111110 000111111111222334445555544333 33222
Q ss_pred HhhHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCC
Q 003315 380 CGVLSVILKGLC-QKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCK---------LGEVEKAMILFKEMKDRQIVPD 449 (831)
Q Consensus 380 ~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~ 449 (831)
+. +...+.-|. ...+.+.+...|+...+ .|.+-|.+ -|+.+.-.+++-.-.. .-
T Consensus 333 ps-L~~~lse~yel~nd~e~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~ 396 (660)
T COG5107 333 PS-LTMFLSEYYELVNDEEAVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSKELLLKRIN----KL 396 (660)
T ss_pred Cc-hheeHHHHHhhcccHHHHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccHHHHHHHHh----hh
Confidence 22 222233333 23333333333333221 11111110 1223222222211111 13
Q ss_pred hhhHHHHHHHHHccCChhhHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003315 450 VVNYTTMICGYCLQGKLGDALDLFKEMKEMG-HKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIE 528 (831)
Q Consensus 450 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 528 (831)
...|...+..-.+..-.+.|..+|-++.+.+ +.+++..+++++..++. |+...|..+|+.-... ++.+...-...+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 4567777877778888899999999998887 67788889999987765 7888899999887665 2333333344555
Q ss_pred HHHcCCCHHHHHHHHHHhhhCC-----CCChHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 529 GLCMGGRVEEAEAFLDGLKGKC-----LENYSAMINGYCKTGHTKEAFQLFMRLS 578 (831)
Q Consensus 529 ~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (831)
.+...++-+.|..+|+...++- ...|..++.--..-|+...+..+=+++.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 6778888888998888554321 1124445544444555544444444443
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.71 E-value=0.038 Score=50.42 Aligned_cols=116 Identities=15% Similarity=0.229 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003315 224 ALAVYQHLKRLGLSLNEYTYVIVIKALCKK-----GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELL 298 (831)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (831)
....|+..... ..+..+|..+++.+.+. |..+=....+..|.+.|+.-|..+|+.|++++=+ |.+-
T Consensus 33 ~~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------ 103 (228)
T PF06239_consen 33 HEELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------ 103 (228)
T ss_pred hHHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc------
Confidence 34555554322 46788888888888753 6677777788888888988899999988887654 2211
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003315 299 LKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGK 360 (831)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 360 (831)
|.. .+.+.-..| -.+-+-|.+++++|...|+.||..++..+++++.+.+.
T Consensus 104 ---------p~n-~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 ---------PRN-FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------ccc-HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 111111111 12456788999999999999999999999999866554
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.64 E-value=0.039 Score=50.36 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=64.3
Q ss_pred CHhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCc--hhhcccCHHHHHH
Q 003315 655 HLVTYTMMIHGYCK-----INCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPD--ALQCKEDVVDASV 727 (831)
Q Consensus 655 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~ 727 (831)
|-.+|..+++.|.+ .|..+=....+++|.+.|+.-|..+|+.||+.+=+-..... +... -..-..+.+-|++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~-n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPR-NFFQAEFMHYPRQQECAID 124 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccc-cHHHHHhccCcHHHHHHHH
Confidence 55555555655552 35566666667777777777777777777776644111000 0000 0012334567889
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003315 728 FWNEMKEMGIRPDVISYTVLIAKLCNTQN 756 (831)
Q Consensus 728 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 756 (831)
++++|...|+.||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999998877764
No 212
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.59 E-value=0.057 Score=53.57 Aligned_cols=285 Identities=16% Similarity=0.085 Sum_probs=142.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCcChh----hHHHHHHHHHHcCChhHHHHHHHHHH--h--cCCC-CChhhHHHH
Q 003315 176 MIKAYVSVGMFDEGIDILFQINRRGFVWSIC----SCNYFMNQLVECGKVDMALAVYQHLK--R--LGLS-LNEYTYVIV 246 (831)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~--~--~~~~-~~~~~~~~l 246 (831)
-+.-+++.|+.+..+.+|+.+++.|-. |.. .|..+.++|.-.+++++|+++...=+ . .|-+ ....+...|
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 345678999999999999999998743 443 46667788888899999988753311 1 1100 122233445
Q ss_pred HHHHHhcCChHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 003315 247 IKALCKKGSMQEAVEVFLEME----KAGV-TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFC 321 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~----~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (831)
.+.+--.|.+++|+-.-.+-+ +.|- ......+-.+..+|...|+--.... |.+...++.=+.
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----------pee~g~f~~ev~--- 168 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----------PEEKGAFNAEVT--- 168 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----------hhhcccccHHHH---
Confidence 555666777777765543322 2221 1223445555666655543211000 000000100000
Q ss_pred hcCCHhHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC-CCHhhHHHHHHHHH
Q 003315 322 DQNKLEKAECVLLHME----KQGV-VPDVYAYSALISGYCKFGKINKALLLHHEMTS----KGIK-TNCGVLSVILKGLC 391 (831)
Q Consensus 322 ~~g~~~~A~~~~~~~~----~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~ll~~~~ 391 (831)
..++.|.+.|.+=. +.|- -.....|..|...|.-.|+++.|+...+.-+. -|-+ .....+..+..++.
T Consensus 169 --~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 169 --SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 11233333333211 1110 01223456666677777888888877655432 1211 11234455566666
Q ss_pred hcCChHHHHHHHHHHHHC----C-CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHH
Q 003315 392 QKGMASATIKQFLEFKDM----G-FFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR-----QIVPDVVNYTTMICGYC 461 (831)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~ 461 (831)
-.|+++.|.+.|+..... | ........-.|.+.|.-..++++|+..+.+-... ...-....+.+|..+|.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 667777777766653221 1 1122333444555555555666666555432110 01113344555555666
Q ss_pred ccCChhhHHHHHHHH
Q 003315 462 LQGKLGDALDLFKEM 476 (831)
Q Consensus 462 ~~g~~~~A~~~~~~~ 476 (831)
..|..++|+...+.-
T Consensus 327 alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 327 ALGEHRKALYFAELH 341 (639)
T ss_pred hhhhHHHHHHHHHHH
Confidence 666666665555443
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.56 E-value=0.014 Score=44.18 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=33.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 178 KAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
..|.+.+++++|+.+++++++.++. ++..+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455666666666666666666533 5555555666666666666666666666654
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.51 E-value=0.74 Score=46.89 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDR 770 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 770 (831)
.+.+++.+..-.|+.++|.+..++|...
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3355666666666666666666666653
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.49 E-value=0.59 Score=47.61 Aligned_cols=106 Identities=11% Similarity=0.096 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---CCcChhhHHHHHHHHHH---cCChhHHHHHHHHHHhcCCCCChhh
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRG---FVWSICSCNYFMNQLVE---CGKVDMALAVYQHLKRLGLSLNEYT 242 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~ 242 (831)
++.+...++-+|...++|+.-+.+.+.+.... .......--..+-++.+ .|+.++|++++..++.....+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 55566677778999999999999999887652 11123333345556667 7999999999999665555788889
Q ss_pred HHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHH
Q 003315 243 YVIVIKALCK---------KGSMQEAVEVFLEMEKAGVTPNAF 276 (831)
Q Consensus 243 ~~~l~~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~ 276 (831)
|..+.+.|-. ....++|+..|.+.-+. .||..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y 260 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYY 260 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--Ccccc
Confidence 9888887753 12356677777766544 34443
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.47 E-value=1.1 Score=44.74 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=59.5
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHH---HHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 003315 529 GLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMR---LSNQGVLVKKSSCNKLITNLLILRDNNNA 605 (831)
Q Consensus 529 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 605 (831)
.+.+.|++.++-++++.+-+..|..--...+.+.+.|+.. +.-+++ +....+ .+..+...+.++-...|++..|
T Consensus 272 alf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta--~dRlkRa~~L~slk~-nnaes~~~va~aAlda~e~~~A 348 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTA--LDRLKRAKKLESLKP-NNAESSLAVAEAALDAGEFSAA 348 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcH--HHHHHHHHHHHhcCc-cchHHHHHHHHHHHhccchHHH
Confidence 4445555555555555554444444333333344444321 111111 111111 1444555555666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC
Q 003315 606 LKLFKTMITLNAEPSKSMYDKLIGALC-QAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 606 ~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 650 (831)
..--+.+... .|....|..|.+.-. ..|+-.+++..+.+.++.
T Consensus 349 Ra~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 349 RAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5555544433 566677776666543 347777888777777764
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.36 E-value=0.065 Score=47.48 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCCChhh
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKR-----LGLSLNEYT 242 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~ 242 (831)
+...++..+...|++++|+...++++..+|- +...+..++.+|...|+...|.++|+.+.+ .|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555566666666666666666666533 566666666666666666666666665532 355555443
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.35 E-value=0.0087 Score=46.13 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 742 ISYTVLIAKLCNTQNLEDGITVFNEISDR--GLE---PD-TVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 742 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~---pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
.+|+.+..+|...|++++|++.+++..+. ... |+ ..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 47899999999999999999999998753 122 22 45788999999999999999999998765
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=2.2 Score=46.51 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=69.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHH--------HcCCCcChhhH-----HHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhh
Q 003315 176 MIKAYVSVGMFDEGIDILFQIN--------RRGFVWSICSC-----NYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYT 242 (831)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 242 (831)
+++++.+..++++-+.+.+.+. ..|++....-| ..+++-++..+.+..|.++-+.+...-. .+...
T Consensus 395 fGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~-~~~~V 473 (829)
T KOG2280|consen 395 FGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES-QGDRV 473 (829)
T ss_pred hcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc-cccHH
Confidence 3444555556666555554432 23444333333 3456777888899999998877653211 11445
Q ss_pred HHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003315 243 YVIVIKALCKKGS--MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLK 300 (831)
Q Consensus 243 ~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (831)
|.....-+.+..+ -+++++..++=..... -+...|..+.+--...|+.+-|..+++.
T Consensus 474 l~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 474 LLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred HHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 5555666665532 2333333333222212 3445677777777788998888887764
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=96.25 E-value=0.063 Score=46.91 Aligned_cols=99 Identities=8% Similarity=-0.102 Sum_probs=79.2
Q ss_pred cccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003315 718 CKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIA 797 (831)
Q Consensus 718 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~ 797 (831)
..|++++|..+|+-+...+ .-|...|..|..++-..+++++|+..|..+...+ .-|+......+.+|...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 4689999999999988644 3355677888888999999999999999988754 3577778889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH
Q 003315 798 LVDEMSVKGIQGDDYTKSSLERGI 821 (831)
Q Consensus 798 ~~~~~~~~g~~pd~~~~~~l~~~~ 821 (831)
.|+.... .|...........+
T Consensus 127 ~f~~a~~---~~~~~~l~~~A~~~ 147 (165)
T PRK15331 127 CFELVNE---RTEDESLRAKALVY 147 (165)
T ss_pred HHHHHHh---CcchHHHHHHHHHH
Confidence 9999887 46555554433333
No 221
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.22 E-value=0.93 Score=41.30 Aligned_cols=65 Identities=9% Similarity=-0.002 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
.+.+|+.|+--+...|+++.|.+.|+...+.++.-+ .+...-.-.+.--|++..|.+-|...-+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 455677777666777777777777777776664422 22222222333456677776666655543
No 222
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.79 Score=42.63 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHH
Q 003315 314 TVVIRWFCDQNKLEKAECVLLH 335 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~ 335 (831)
...|-.+.-..++..|++.++.
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcc
Confidence 3333444444455555555555
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=1.1 Score=41.83 Aligned_cols=180 Identities=16% Similarity=0.122 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
-...|.....+|...+++++|...+.++.+-. ..+... +-..+.++.|.-+.+++.+. +--+..|+--..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 34577788889999999999999888877432 212221 22234456666677776653 223445666677
Q ss_pred HHHhcCChHHHHHHHHHHHhC--CCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 003315 249 ALCKKGSMQEAVEVFLEMEKA--GVTPNAF--AYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQN 324 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~--~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 324 (831)
.|..+|..+.|-..++++-+. ++.|+.. .|..-+......++...|. ..+....+++++..
T Consensus 100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~---------------el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF---------------ELYGKCSRVLVRLE 164 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH---------------HHHHHhhhHhhhhH
Confidence 888999998888888776542 3344432 2222222222223322332 33444566777777
Q ss_pred CHhHHHHHHHHHHHCC----CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 325 KLEKAECVLLHMEKQG----VVPDV-YAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 325 ~~~~A~~~~~~~~~~~----~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
++++|-..|.+-.... -.++. ..|...|-.|.-..++..|...++.--+
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 7777766655433210 01121 3355566667777788888887776444
No 224
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.12 Score=49.28 Aligned_cols=92 Identities=15% Similarity=0.062 Sum_probs=45.6
Q ss_pred HHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-c-C
Q 003315 127 LCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV-W-S 204 (831)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~ 204 (831)
+...|++..|...|...++..|+ ....+.++.-|+.++...|++++|...|..+.+.-++ | -
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~----------------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPN----------------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC----------------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC
Confidence 33444455555555555554332 2334445555555555555555555555555543222 1 1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
+.++..+..+..+.|+.++|..+|+++.+.
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 234444555555555555555555555543
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.16 E-value=0.045 Score=56.18 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDT----VTYTALLCGYLAKGDLDRAIALVDEMSVK 805 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 805 (831)
+...|+.+..+|.+.|++++|+..|++.++ +.|+. .+|+.+..+|...|+.++|++.+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446899999999999999999999999997 57774 35999999999999999999999998874
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=96.14 E-value=0.21 Score=43.80 Aligned_cols=94 Identities=9% Similarity=-0.079 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 003315 120 YAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR 199 (831)
Q Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (831)
....+.-+-..|++++|..+|+.+...++ .+++-+..|+.++-..|++++|+..|..+...
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-------------------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDF-------------------YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555667777777777776655432 24556667777777777888888877776655
Q ss_pred CCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 200 GFVWSICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 200 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
+. .|+...-.....+...|+.+.|...|+...+
T Consensus 101 ~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 101 LK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 53 2555555667777777788888877777765
No 227
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.13 E-value=1 Score=41.01 Aligned_cols=186 Identities=14% Similarity=0.070 Sum_probs=111.4
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 003315 180 YVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEA 259 (831)
Q Consensus 180 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (831)
|-..|-++-|..-|.+.+...+. -+.++|.+.--+...|+++.|.+.|+...+.+..-+-...|.-|..| --|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhh
Confidence 44455566666667777766644 66789999999999999999999999999865222222333333322 47899999
Q ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHH-HHHHHCCCCCChhhHHH-HHHHHHhcCCHhHHHHHHHHH
Q 003315 260 VEVFLEMEKAGV-TPNAFAYSTCIEGLCMNGMLDLGYELL-LKWEEADIPLSAFAYTV-VIRWFCDQNKLEKAECVLLHM 336 (831)
Q Consensus 260 ~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 336 (831)
.+-|...-+.+. .|-...|.-+ -...-++.+|..-+ ++.... +..-|.. ++..|...=..+. +++++
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~---l~~~~ 222 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEET---LMERL 222 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHH---HHHHH
Confidence 988877766531 2222333322 23445666665544 333332 2233322 2333332222222 33333
Q ss_pred HHCCCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003315 337 EKQGVV------PDVYAYSALISGYCKFGKINKALLLHHEMTSKGIK 377 (831)
Q Consensus 337 ~~~~~~------p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 377 (831)
....-. .=..+|--|...+...|+.++|..+|+-.+..++.
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 321110 12457888999999999999999999988876543
No 228
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.12 E-value=1.3 Score=42.02 Aligned_cols=79 Identities=13% Similarity=0.022 Sum_probs=44.6
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 003315 122 AIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGF 201 (831)
Q Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 201 (831)
.-+....+.|++++|...|..+....| ..+..+.+...++.++.+.+++++|+...++.++..+
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p----------------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHP----------------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC----------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 333444556666666666666554422 2344556666777777777777777777777666544
Q ss_pred CcChhhHHHHHHHHH
Q 003315 202 VWSICSCNYFMNQLV 216 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~ 216 (831)
...-..|-..+.+++
T Consensus 103 ~~~n~dY~~YlkgLs 117 (254)
T COG4105 103 THPNADYAYYLKGLS 117 (254)
T ss_pred CCCChhHHHHHHHHH
Confidence 322223444444444
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.10 E-value=0.13 Score=53.06 Aligned_cols=67 Identities=6% Similarity=-0.189 Sum_probs=59.0
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh---hhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSI---CSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
+.++.+++.++.+|...|++++|+..|+++++.++. +. .++..+..+|...|+.++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457789999999999999999999999999998755 33 35889999999999999999999999874
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.87 Score=43.97 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=26.2
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 003315 179 AYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLK 232 (831)
Q Consensus 179 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 232 (831)
.....|++.+|...|..+...... +......++..|...|+.+.|..++..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 334455555555555555544433 33344445555555555555555555543
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.84 Score=44.04 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=111.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 212 MNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGML 291 (831)
Q Consensus 212 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 291 (831)
.......|++.+|...|....... +.+...-..++..|...|+.+.|..++..+...--.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345667889999999999988754 3456677788999999999999999999876542222223323345666666666
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003315 292 DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ--GVVPDVYAYSALISGYCKFGKINKALLLHH 369 (831)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 369 (831)
.+...+-+++-.. |.|......+...+...|+.++|.+.+-.+.+. |.. |...-..|+..+.-.|.-+.+...++
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6666666655553 668889999999999999999999888777664 333 66777888888888776555444443
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.97 E-value=0.068 Score=47.33 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSV-----KGIQGDDYTKS 815 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~pd~~~~~ 815 (831)
+...++..+...|++++|+++.+++... -+-|...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4556777888999999999999999984 344688999999999999999999999998753 49999988655
No 233
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=3.6 Score=45.60 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=45.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHH
Q 003315 747 LIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDE----MSVKGIQGDDYTKSSLERGIE 822 (831)
Q Consensus 747 l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~g~~pd~~~~~~l~~~~~ 822 (831)
++..++...+.+.++.+.+..- +-|+..|..++..+.+.+.++.-.+..++ +.....-|... ++..+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g----~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~----VL~~La 782 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG----KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLH----VLQILA 782 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC----ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHH----HHHHHh
Confidence 3445667777777777666653 33788888888888888755544444443 33434444444 455666
Q ss_pred hccccccc
Q 003315 823 KARILQYR 830 (831)
Q Consensus 823 ~~~~~~~~ 830 (831)
|.+.+.|.
T Consensus 783 kn~~ltls 790 (933)
T KOG2114|consen 783 KNGTLTLS 790 (933)
T ss_pred cCCceEEe
Confidence 66655443
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.82 E-value=2.3 Score=42.42 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHcCCh---hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 207 SCNYFMNQLVECGKV---DMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
++..++.++...+.. ++|..+++.+.+.. +..+..+..-++.+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344455555555543 34455555554321 222444444555555566677777777777654
No 235
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.75 E-value=0.06 Score=41.37 Aligned_cols=70 Identities=10% Similarity=0.165 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
..++..++.++...|++++|...+.+.++..... ++..+....++..++.+|...|++++|++.++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQL------------GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT------------TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH------------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567889999999999999999999887651110 0111224668899999999999999999999987
Q ss_pred HH
Q 003315 197 NR 198 (831)
Q Consensus 197 ~~ 198 (831)
.+
T Consensus 73 l~ 74 (78)
T PF13424_consen 73 LD 74 (78)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 236
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.72 E-value=2.7 Score=42.52 Aligned_cols=84 Identities=21% Similarity=0.230 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCC
Q 003315 487 TYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGH 566 (831)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 566 (831)
+.+..+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-+++-.. ++.|..|...+..+.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Confidence 44444555566666666666554442 45666666666777777777766665432 4455556666666666666
Q ss_pred HHHHHHHHHH
Q 003315 567 TKEAFQLFMR 576 (831)
Q Consensus 567 ~~~A~~~~~~ 576 (831)
..+|..++.+
T Consensus 253 ~~eA~~yI~k 262 (319)
T PF04840_consen 253 KKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHh
Confidence 6666665544
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.26 Score=49.55 Aligned_cols=141 Identities=13% Similarity=0.011 Sum_probs=93.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003315 556 AMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAE 635 (831)
Q Consensus 556 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 635 (831)
.-+..|.+.|++..|...|+++...=. +.+.-+.++..... ..-..+++.+.-+|.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~-------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLE-------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhh-------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhh
Confidence 346677777777777777776543210 00001111111111 111235666777889999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCch
Q 003315 636 EMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDA 715 (831)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 715 (831)
++..|...-++.+..+.. |....-.=..++...|.++.|+..|+++++ +.|+......-+..|..
T Consensus 272 ~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~------------ 336 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQ------------ 336 (397)
T ss_pred hHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH------------
Confidence 999999999999987544 777777888899999999999999999997 67877777766666654
Q ss_pred hhcccCHHHHHHHHHHHH
Q 003315 716 LQCKEDVVDASVFWNEMK 733 (831)
Q Consensus 716 ~~~~~~~~~a~~~~~~m~ 733 (831)
+.++..++..++|..|.
T Consensus 337 -k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 337 -KIREYEEKEKKMYANMF 353 (397)
T ss_pred -HHHHHHHHHHHHHHHHh
Confidence 12233445577777776
No 238
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.67 E-value=0.23 Score=42.06 Aligned_cols=82 Identities=21% Similarity=0.111 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDR---------------GLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
|..++.+++.++++.|+++...++++..-.- ...|+..+..+++.+|+..|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888999999999999999998875321 2467889999999999999999999999999865
Q ss_pred C-CCCCCHHHHHHHHHHH
Q 003315 805 K-GIQGDDYTKSSLERGI 821 (831)
Q Consensus 805 ~-g~~pd~~~~~~l~~~~ 821 (831)
. +++-+..+|..|++=.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 4 8888888888887733
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.66 E-value=0.31 Score=41.66 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV--WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
++..+..-+....+.|++++|++.|+.+...-+. -...+...++.++.+.+++++|...++++++....-....|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4566677788889999999999999998876432 23445677889999999999999999999986532223456555
Q ss_pred HHHHHhcC
Q 003315 247 IKALCKKG 254 (831)
Q Consensus 247 ~~~~~~~g 254 (831)
+.+++...
T Consensus 89 ~~gL~~~~ 96 (142)
T PF13512_consen 89 MRGLSYYE 96 (142)
T ss_pred HHHHHHHH
Confidence 66655433
No 240
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.63 E-value=0.028 Score=37.27 Aligned_cols=40 Identities=18% Similarity=0.022 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYF 211 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (831)
.++..++..|.+.|++++|+++|+++++..+. |...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 45667888888888888888888888887644 55555444
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.2 Score=50.28 Aligned_cols=124 Identities=15% Similarity=-0.040 Sum_probs=79.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhC-----CC---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 003315 248 KALCKKGSMQEAVEVFLEMEKA-----GV---------TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAY 313 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~-----~~---------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (831)
+.|.+.|++..|...|++++.. +. ..-..+++.+.-++.+.+++.+|++.-.+.+..+ +.|+...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3455555665555555554331 00 1122356667777888888888888888888876 6777777
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHh
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKIN-KALLLHHEMTS 373 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~ 373 (831)
..-.+++...|+++.|+..|+++.+..+. |-..-+.|+.+..+..+.. +..++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77888888888888888888888876433 4444555555554444443 33667777654
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.53 E-value=0.67 Score=38.49 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003315 622 SMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGIT 688 (831)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 688 (831)
......++.+.++|+-++-.++...+.+ +-++++...-.+..+|.+.|+..++-+++++.-++|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344455666777777777777777764 23567777777777777888877777777777776653
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.44 E-value=0.65 Score=38.38 Aligned_cols=95 Identities=16% Similarity=0.024 Sum_probs=68.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh---hHHHHHHHHH
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY---TYVIVIKALC 251 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~ 251 (831)
.-+.+.+..|+++.|++.|.+.+..-+. ...+||.-.+++.-+|+.++|+.-+++.++..-+.+.. .|..-...|.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 4455667788888888888888877544 77788888888888888888888888877643222222 2333344566
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 003315 252 KKGSMQEAVEVFLEMEKAG 270 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~ 270 (831)
..|+-+.|..-|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 7788888888888877766
No 244
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.39 E-value=3.3 Score=41.30 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 277 AYSTCIEGLCMNGMLD---LGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 277 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
++..++.+|...+..+ +|..+++.+... .+..+.++..-++.+.+.++.+++.+++.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666665544 344455555333 2333555555566666677777777777777765
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.38 E-value=2.6 Score=40.05 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=29.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGV--TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
-.+.|++++|.+.|+.+..... +-...+...++.++.+.+++++|+...++.+..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3456666666666666654310 112234444555555666666666666665554
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.22 E-value=2.8 Score=43.75 Aligned_cols=147 Identities=10% Similarity=0.047 Sum_probs=79.5
Q ss_pred ChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCC---CchhH---H
Q 003315 83 NTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHN-LCTYAAIVRILCCCGWQKKLESMLLELVRKKTD---ANFEA---T 155 (831)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~---~ 155 (831)
.+..-+..-+-+..+|..-...-+++.+. .|+ +..|..++.- .+....++..++++.++.... .+... .
T Consensus 169 r~Aq~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g 244 (539)
T PF04184_consen 169 RPAQEIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHG 244 (539)
T ss_pred CHHHHHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhccc
Confidence 33333333344556777777766666654 222 2333222211 133456788888887765321 00000 0
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-cChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 156 DLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV-WSICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
...+.+..++..+...+-..++.+.-+.|+.++|++.++.+.+..+. .+......++..+...+++.++..++.+-.+
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 01122223333344445556666667778888888887777765432 2344566677777777777777777776543
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.08 E-value=0.73 Score=39.45 Aligned_cols=85 Identities=14% Similarity=0.037 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++..+..-+......|++++|...+..+....|- .+..+.+-..|+.+|.+.+++++|+..+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~----------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPF----------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----------------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4555666777788899999999988887666442 234566778999999999999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHH
Q 003315 196 INRRGFVWSICSCNYFMNQLV 216 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~ 216 (831)
.++..+..--..|-..+.+++
T Consensus 73 FirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 73 FIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCCCCCccHHHHHHHHH
Confidence 999876533333444444443
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=95.07 E-value=1.4 Score=45.77 Aligned_cols=110 Identities=11% Similarity=0.034 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 003315 185 MFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFL 264 (831)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (831)
...+|.+..+++.+.+.. |..+...+..++.-.++++.|...|++....+ |....+|........-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456778888888888844 88888888888888888999999999988764 2334566666666777899999999999
Q ss_pred HHHhCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHH
Q 003315 265 EMEKAGVTPNAFAY---STCIEGLCMNGMLDLGYELLL 299 (831)
Q Consensus 265 ~m~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~ 299 (831)
+..+. .|..... ...++.|+..+ .++|..+|-
T Consensus 397 ~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 397 KSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 97765 4544322 22233444433 455555553
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.02 E-value=0.59 Score=44.65 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC------hHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 522 THNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN------YSAMINGYCKTGHTKEAFQLFMRLSNQ 580 (831)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (831)
.|+..+. +.+.|++.+|+..|....+..|.+ +.-|+.++...|++++|...|..+.+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~ 207 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD 207 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 4554443 345556666666666666655443 333555555555555555555555444
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.98 E-value=2.2 Score=42.20 Aligned_cols=161 Identities=11% Similarity=0.032 Sum_probs=82.0
Q ss_pred ccCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHH
Q 003315 94 LRKEPKIALSFFEQLKRS--GFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTR 171 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (831)
+.++...|+....+...+ +....-.++..+..+.+..|++++++......+....+. .+....-.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~-------------~ds~~~~e 84 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL-------------EDSDFLLE 84 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH
Confidence 345677777776665532 111123344555666777777777665544333321110 01122334
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCc---ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-----CChhh
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRG-FVW---SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS-----LNEYT 242 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~ 242 (831)
+|..+.+++-+.-++.+++.+-..-.... -.+ -......+.+++...+.++++++.|+...+.... .....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 66677777777777777666544433221 111 1122334555555566666666666665532110 11235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 243 YVIVIKALCKKGSMQEAVEVFLEME 267 (831)
Q Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~m~ 267 (831)
+..|...|.+..++++|+-...++.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 5566666666666666665555544
No 251
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.98 E-value=8.2 Score=43.64 Aligned_cols=203 Identities=13% Similarity=0.056 Sum_probs=99.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CC-----HHHHHHH--HHHHHhcCCHHHHHHHHH--------HHHHCCCCCCH
Q 003315 593 ITNLLILRDNNNALKLFKTMITLNAE-PS-----KSMYDKL--IGALCQAEEMEQAQLVFN--------VLVDKGLTPHL 656 (831)
Q Consensus 593 ~~~~~~~~~~~~a~~~~~~~~~~~~~-p~-----~~~~~~l--~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~ 656 (831)
++..+-.+++..+...++.+.....+ |+ ...+..+ +-.+...|+++.|...|. .....+...+.
T Consensus 368 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El 447 (608)
T PF10345_consen 368 IWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFREL 447 (608)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHH
Confidence 34455678888888888887754321 11 1222222 223445799999999997 44455445444
Q ss_pred hHHHH--HHHHHHHcCC--HHH--HHHHHHHHHHC-CCCC--CHHHHHH-HHHHhhccccCCCCCCCchhhcccCHHHHH
Q 003315 657 VTYTM--MIHGYCKINC--LRE--ARDVFNDMKQR-GITP--DVVTYTV-LFDAHSKINLKGSSSSPDALQCKEDVVDAS 726 (831)
Q Consensus 657 ~~~~~--l~~~~~~~g~--~~~--A~~~~~~m~~~-~~~p--~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 726 (831)
..+.. ++..+...+. .++ +.++++.+... .-.| +..++.. ++.++..... ......+..+.+++
T Consensus 448 ~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~ne~k~~l~~~L 521 (608)
T PF10345_consen 448 YILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEP------FSSNEAKRHLQEAL 521 (608)
T ss_pred HHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCc------cccHHHHHHHHHHH
Confidence 44432 2222222222 223 66666665432 1122 3333333 3333322110 00001222333444
Q ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC--HHHHH-----HHHHHHHhcCCHHHHHH
Q 003315 727 VFWNEMKEMGIR-PDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLE-PD--TVTYT-----ALLCGYLAKGDLDRAIA 797 (831)
Q Consensus 727 ~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-pd--~~~~~-----~l~~~~~~~g~~~~A~~ 797 (831)
+.. ....+.. --...++.+...+. .|+..+..+.........-+ || ...|. .+...+...|+.++|.+
T Consensus 522 ~~~--~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~ 598 (608)
T PF10345_consen 522 KMA--NNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEE 598 (608)
T ss_pred HHH--HHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 443 0111111 11123454444444 78888876666654422111 23 34453 34455778899999999
Q ss_pred HHHHHHh
Q 003315 798 LVDEMSV 804 (831)
Q Consensus 798 ~~~~~~~ 804 (831)
...+...
T Consensus 599 ~~~~~~~ 605 (608)
T PF10345_consen 599 ARQQLDR 605 (608)
T ss_pred HHHHHHH
Confidence 8877654
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.93 E-value=0.45 Score=39.28 Aligned_cols=91 Identities=15% Similarity=0.005 Sum_probs=73.1
Q ss_pred HHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh
Q 003315 126 ILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSI 205 (831)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 205 (831)
.+...|+.+.|++.|.+.+...|. .+.+|+.-++++.-.|+.++|++-+.++++.......
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-------------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr 112 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-------------------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR 112 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-------------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch
Confidence 466788999999999998888655 5678999999999999999999999999886433333
Q ss_pred hhH---HHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003315 206 CSC---NYFMNQLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 206 ~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
..+ -.-...|...|+-+.|..-|+...+.|
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 333 334456778899999999999988876
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.65 E-value=1.5 Score=47.27 Aligned_cols=137 Identities=13% Similarity=0.104 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCChhHHHHHHH
Q 003315 119 TYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVS----VGMFDEGIDILF 194 (831)
Q Consensus 119 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 194 (831)
...+++.++...|+-+..+++++...+...-..+ +.. ...-.|...+..++. ....+.|.+++.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~-----la~-------L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~ 257 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSP-----LAA-------LVLLWYHLVVPSFLGIDGEDVPLEEAEELLE 257 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchH-----HHH-------HHHHHHHHHHHHHcCCcccCCCHHHHHHHHH
Confidence 3445666666666666666666654442111000 000 011233333333322 234555666666
Q ss_pred HHHHcCCCcChhhH-HHHHHHHHHcCChhHHHHHHHHHHhc--CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 195 QINRRGFVWSICSC-NYFMNQLVECGKVDMALAVYQHLKRL--GL-SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 195 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
.+.+.- |+...+ -.-.+.+...|+.++|++.|+..... .. +.....+..++..+.-.++|++|.+.|..+.+.
T Consensus 258 ~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 258 EMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 666553 222222 22334555566666666666654321 00 011223334444555566666666666666654
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.62 E-value=1.6 Score=47.12 Aligned_cols=116 Identities=15% Similarity=-0.032 Sum_probs=55.9
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChHHHH
Q 003315 289 GMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG---VVPDVYAYSALISGYCKFGKINKAL 365 (831)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~~~~~~~A~ 365 (831)
.+.+.|.++++.+.++- |........-.+.+...|++++|.+.|++..... .+.....+-.+.-.+.-.++|++|.
T Consensus 247 ~~~~~a~~lL~~~~~~y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY-PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 34455666666665552 3333333344555556666666666666543210 0112223334455555666666666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHH-HHhcCCh-------HHHHHHHHHH
Q 003315 366 LLHHEMTSKGIKTNCGVLSVILKG-LCQKGMA-------SATIKQFLEF 406 (831)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~-------~~a~~~~~~~ 406 (831)
+.|..+.+..-. +..+|..+..+ +...++. ++|.+.+.++
T Consensus 326 ~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 326 EYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 666666654322 22223222222 2234444 5666666554
No 255
>PRK11906 transcriptional regulator; Provisional
Probab=94.57 E-value=2.7 Score=43.80 Aligned_cols=162 Identities=10% Similarity=0.028 Sum_probs=103.4
Q ss_pred hhH--HHHHHHHHHc--C---ChhHHHHHHHHHHhc-CCCCC-hhhHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 003315 206 CSC--NYFMNQLVEC--G---KVDMALAVYQHLKRL-GLSLN-EYTYVIVIKALCK---------KGSMQEAVEVFLEME 267 (831)
Q Consensus 206 ~~~--~~l~~~~~~~--~---~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~ 267 (831)
..| ...+++.... + ..+.|+.+|.+.... ...|+ ...|..+...+.. .....+|.+..++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 4455554442 1 346788889998821 22343 3444444433321 233566777788888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH-
Q 003315 268 KAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVY- 346 (831)
Q Consensus 268 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~- 346 (831)
+.+ +-|..+...+..++.-.++++.|...|++....+ |....+|........-.|+.++|.+.+++..+..+..-..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 776 5677777788887888888999999999988876 5567777777777788899999999999877753221112
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 003315 347 AYSALISGYCKFGKINKALLLHHE 370 (831)
Q Consensus 347 ~~~~li~~~~~~~~~~~A~~~~~~ 370 (831)
.....++.|+. ..++.|+.+|-+
T Consensus 410 ~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcC-CchhhhHHHHhh
Confidence 22223345554 346677766644
No 256
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.54 E-value=0.73 Score=39.06 Aligned_cols=99 Identities=9% Similarity=0.042 Sum_probs=72.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHH
Q 003315 655 HLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKE 734 (831)
Q Consensus 655 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 734 (831)
|..++..++.++++.|+.+....++++.- |+.++...- .+. --..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~------------------------~~~---------~~~~ 45 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK------------------------EGD---------YPPS 45 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc------------------------cCc---------cCCC
Confidence 45678889999999999998888887664 444431100 000 0012
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 003315 735 MGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDR-GLEPDTVTYTALLCGYLA 788 (831)
Q Consensus 735 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~pd~~~~~~l~~~~~~ 788 (831)
....|+.....+++.+|+..|++..|+++++...+. +++.+..+|..|+.=+..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999999998854 667778889888755443
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.46 E-value=2.4 Score=44.17 Aligned_cols=63 Identities=10% Similarity=0.117 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 622 SMYDKLIGALCQAEEMEQAQLVFNVLVDKGLT-PHLVTYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
.+-..+..++.+.|+.++|.+.|.++.+.... .+......|+.++...+.+.++..++.+.-+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33344666777888888888888888764322 2344667788888888888888888887643
No 258
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.40 E-value=2.3 Score=42.03 Aligned_cols=200 Identities=11% Similarity=-0.009 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHH----HHHcC-CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCCC---hhh
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQ----INRRG-FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL-GLSLN---EYT 242 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~ 242 (831)
++..+..+..+.|.+++++..--. +.+.. ....-.+|..+.+.+.+.-++.+++.+-..-... |..|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 555677777888888877654322 22211 0112234445555555555566666665554432 11111 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCC-C-----
Q 003315 243 YVIVIKALCKKGSMQEAVEVFLEMEKAGVT-----PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA--DIPL-S----- 309 (831)
Q Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~----- 309 (831)
..++..++.-.+.++++++.|+.+...... .....+..|...|.+..|+++|.-+..+..+. .... |
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 445667777788899999999887753111 12346778888888888888887766655442 1111 1
Q ss_pred -hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCCHHH----HHHHHHHHHhcCChHHHHHHHHHH
Q 003315 310 -AFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV-VPDVYA----YSALISGYCKFGKINKALLLHHEM 371 (831)
Q Consensus 310 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~----~~~li~~~~~~~~~~~A~~~~~~~ 371 (831)
......+..++...|++.+|.+..++..+..+ .-|..+ ...+.++|-..|+.|.|..-|++.
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 11223345566677777777777776554211 113333 344667777777777777666654
No 259
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.37 E-value=3.2 Score=36.50 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=22.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChh-hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSIC-SCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
.+.+..++|+..|..+.+.|...-+. ............|+...|...|+++-.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 34444455555555444444332111 122223333444445555555555443
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=1.3 Score=43.31 Aligned_cols=117 Identities=13% Similarity=0.007 Sum_probs=81.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH----HHHHHHHhcCCh
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV----IVIKALCKKGSM 256 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 256 (831)
-..|++.+|...++++++.- +.|..+.+..=.++.-.|+.+.-...++++.-. ..++...|. ...-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 45677777877888887764 447777777777888888888888888877643 123443332 222234467888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003315 257 QEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLK 300 (831)
Q Consensus 257 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (831)
++|++.-++..+.+ +.|..+-..+...+...|+..++.++..+
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 88888888887765 55666777777888888888888777655
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.22 E-value=1.2 Score=47.42 Aligned_cols=106 Identities=19% Similarity=0.118 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFC 321 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (831)
..+.++..+.+.|..+.|+++-..-. .-.....+.|+++.|.++.++ ..++..|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 34555555555555555555432211 112233345555555444321 224445555666666
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 322 DQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
++|+++-|++.|.+... +..|+-.|.-.|+.++-.++.+.....
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 66666666655555432 344445555555555555555444443
No 262
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.18 E-value=12 Score=43.69 Aligned_cols=19 Identities=32% Similarity=0.186 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 003315 780 TALLCGYLAKGDLDRAIAL 798 (831)
Q Consensus 780 ~~l~~~~~~~g~~~~A~~~ 798 (831)
..|+.++...|..++|.++
T Consensus 1188 ~~Ll~~l~~~g~~eqa~~L 1206 (1265)
T KOG1920|consen 1188 KRLLEVLVTFGMDEQARAL 1206 (1265)
T ss_pred HHHHHHHHHcCCcHHHHHH
Confidence 3566666667766666655
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.05 E-value=0.16 Score=33.66 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 003315 312 AYTVVIRWFCDQNKLEKAECVLLHMEKQG 340 (831)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (831)
++..+.+.|.+.|++++|+++|+++.+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34445555555555555555555555543
No 264
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.03 E-value=3.6 Score=37.18 Aligned_cols=95 Identities=18% Similarity=0.063 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWS--ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
..+++.++..|++++|...+++.+....+.+ ..+-..+.++....|.+|+|+..++.....+. .......-.+.+.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 4566777788888888888887765421211 11223355666777788888887777655321 2223344456677
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 003315 252 KKGSMQEAVEVFLEMEKAG 270 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~ 270 (831)
..|+-++|...|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7788888888887777654
No 265
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.99 E-value=8.6 Score=39.71 Aligned_cols=125 Identities=12% Similarity=0.012 Sum_probs=74.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003315 285 LCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKA 364 (831)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 364 (831)
-...|+.-.|-+-+...+.+. +.++.........+...|+++.+.+.+...... +.....+...++....+.|+++.|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 334566655554444444432 334444444555666778888887777666543 223445666677777778888888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003315 365 LLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFF 412 (831)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (831)
..+-.-|+...+. +...........-..|-++++.-.|+++...+.+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8888877776655 3333333333334556677777777777655443
No 266
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.90 E-value=14 Score=41.77 Aligned_cols=164 Identities=15% Similarity=0.066 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHH----HHHcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQ----LVECGKVDMALAVYQHLKRLGLSLNEYTYVI 245 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (831)
..........+...|.+++|++.. ...+ |+.....++.- +...++....+...+.+...-+.-++.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hA---laA~---d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHA---LAAG---DPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHH---HhCC---CHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHH
Confidence 567778888888899999888763 3333 22322333322 2233444333333333221000011111222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHH-HHHHhcCChhHHHHHHHHHHHCC----CCCChhhH
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPNAF-------AYSTCI-EGLCMNGMLDLGYELLLKWEEAD----IPLSAFAY 313 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~ 313 (831)
-+....-..++.+|..++.++...-..|+.. .++.+- ......|+++++.++.+.....= .......+
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 2233445788899988888876542122211 233332 23445678888888877776641 12234456
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
..+..+..-.|++++|..+..+..+.
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 66677777788888888777665543
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.89 E-value=3.7 Score=36.18 Aligned_cols=123 Identities=19% Similarity=0.145 Sum_probs=55.5
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHhcCCh
Q 003315 216 VECGKVDMALAVYQHLKRLGLSLNEY-TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAF-AYSTC--IEGLCMNGML 291 (831)
Q Consensus 216 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l--~~~~~~~~~~ 291 (831)
...+..++|+.-|..+.+.|...=+. ............|+...|+..|++.-...-.|-.. -...| .-.+...|-+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44556667777777766654321111 12222333455677777777777665432222221 00111 1123344445
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 003315 292 DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEK 338 (831)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (831)
+......+-+...+-+.-......|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44444444443333333333334444444444555555555444443
No 268
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.88 E-value=3.3 Score=34.57 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003315 590 NKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLT 653 (831)
Q Consensus 590 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 653 (831)
+..+..+...|+.+.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33444455556666666666665542 2566667777777777777777777777777766543
No 269
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.78 E-value=4.1 Score=35.56 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=19.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 003315 280 TCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD 322 (831)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (831)
.++..+...+.......+++.+...+ +.++..++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444455555555444443 2344444444444443
No 270
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.74 E-value=1.8 Score=42.31 Aligned_cols=158 Identities=13% Similarity=0.005 Sum_probs=88.4
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCC
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR-GFV 202 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 202 (831)
+-++-..|++.+|.....++++..|. +.-++...=.+|.-.|+.+.-...++++.-. +..
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~Pt-------------------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~d 170 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPT-------------------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNAD 170 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCch-------------------hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCC
Confidence 33556677777777777777776443 2223334445566677777777777776654 221
Q ss_pred cChhhH--HHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHH
Q 003315 203 WSICSC--NYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPN---AFA 277 (831)
Q Consensus 203 ~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~ 277 (831)
..-.+| ....-.+..+|-+++|++.-++..+.+ +.|...-.++...+--.|++.++.+...+-...=-..+ ..-
T Consensus 171 lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHN 249 (491)
T KOG2610|consen 171 LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHN 249 (491)
T ss_pred CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhh
Confidence 111122 223334456777888877777776654 34555566666667677777777776655433100001 011
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 003315 278 YSTCIEGLCMNGMLDLGYELLLKW 301 (831)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~ 301 (831)
|=...-.+...+.++.|+++|..-
T Consensus 250 yWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 250 YWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred hHHHHHhhhcccchhHHHHHHHHH
Confidence 112223344557778888777553
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.73 E-value=6.8 Score=37.63 Aligned_cols=132 Identities=20% Similarity=0.036 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH-
Q 003315 241 YTYVIVIKALCKKGSMQEAVEVFLEMEKA-GVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIR- 318 (831)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 318 (831)
..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444455555555555555544431 112233334444444444444555555555544432111 111111222
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 319 WFCDQNKLEKAECVLLHMEKQGV--VPDVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
.+...|+++.|...+++...... ......+......+...++.+.+...+.....
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 44555555555555555533211 01222222223334444555555555555544
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.71 E-value=4.4 Score=35.36 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=48.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.++..+...+.+...+..++.+.+.+. .+....+.++..|++.++ ++....++. . .+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 455556666677777777777766653 456666777777765532 222333321 1 23333444566666666
Q ss_pred ChHHHHHHHHHH
Q 003315 255 SMQEAVEVFLEM 266 (831)
Q Consensus 255 ~~~~A~~~~~~m 266 (831)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666666554
No 273
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.55 E-value=12 Score=40.09 Aligned_cols=134 Identities=10% Similarity=0.050 Sum_probs=91.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 003315 238 LNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAF-AYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVV 316 (831)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (831)
.+-..|+.++.---...+.+.+..++..++.. -|... .|......=.+.|..+.+.++|++.+.. +|.+...|..+
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 34556666664444444456667777777754 46554 4455555566788889999999988875 57777788777
Q ss_pred HHHHHh-cCCHhHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 317 IRWFCD-QNKLEKAECVLLHMEKQ-GVV-PDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 317 ~~~~~~-~g~~~~A~~~~~~~~~~-~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
...+.. .|+.+...+.|+..... |.. -....|...|..-..++++.....++++.++.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 766654 47777788888887764 211 13456777777777788888888888888775
No 274
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.49 E-value=0.19 Score=30.89 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 777 VTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGD 810 (831)
Q Consensus 777 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 810 (831)
.+|..++.+|...|++++|++.+++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777766 5554
No 275
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.22 E-value=14 Score=39.72 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChh-hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSIC-SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
.+..++.---.....+.+..+|..++.. -|... -|......=.+.|..+.+.++|++-+. +++.+...|...+..+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 3444444333334445666666666644 23332 344455555677888888888888775 3566666776666555
Q ss_pred H-hcCChHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 251 C-KKGSMQEAVEVFLEMEKA-GVT-PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 251 ~-~~g~~~~A~~~~~~m~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
. ..|+.+.....|+.++.. |.. -....|-..|..-..++++.....+++++++.
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 4 357777778888887763 322 23345666666667777888888888887764
No 276
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.10 E-value=1.7 Score=46.10 Aligned_cols=98 Identities=21% Similarity=0.305 Sum_probs=53.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 003315 425 LCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKA 504 (831)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 504 (831)
..+.|+++.|.++.++.. +...|..|......+|+++-|.+.|.+..+ +..++-.|.-.|+.+..
T Consensus 328 Al~lg~L~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 345666666665543322 555677777777777777777777665432 34455556666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003315 505 FDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFL 543 (831)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 543 (831)
.++.+.....| . ++....++.-.|+.++..+++
T Consensus 393 ~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 393 SKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHH
Confidence 66666665554 1 233333444456666555554
No 277
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.83 E-value=20 Score=40.52 Aligned_cols=191 Identities=14% Similarity=0.104 Sum_probs=114.1
Q ss_pred hHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHH-cCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHH
Q 003315 99 KIALSFFEQLK-RSGFSH--NLCTYAAIVRILC-CCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSD 174 (831)
Q Consensus 99 ~~A~~~~~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (831)
..|+.+++.+. +..++| +..++.+++.+|. ...+.++|...+.+.+.......+. + .--.+-.
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~--d-----------~k~~~~~ 104 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT--D-----------LKFRCQF 104 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH--H-----------HHHHHHH
Confidence 45778887776 443343 3556778888887 5778899999988876653321111 0 0122344
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcC----CCcChhhHHHH-HHHHHHcCChhHHHHHHHHHHhcC---CCCChhhHHHH
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRG----FVWSICSCNYF-MNQLVECGKVDMALAVYQHLKRLG---LSLNEYTYVIV 246 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l 246 (831)
.+++.+.+.+... |....++.++.- ..+....+..+ +..+...+++..|.+.++.+.... ..|....+-.+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 6678777777776 888888866532 12333344444 333334478999999998877532 12333444444
Q ss_pred HHHHH--hcCChHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHH
Q 003315 247 IKALC--KKGSMQEAVEVFLEMEKAG---------VTPNAFAYSTCIEGLC--MNGMLDLGYELLLKWEE 303 (831)
Q Consensus 247 ~~~~~--~~g~~~~A~~~~~~m~~~~---------~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 303 (831)
+.+.. +.+..+++++.++++.... ..|...++..+++.++ ..|+++.+...++++.+
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44443 4566777777777764321 1234556777766644 56776677666655543
No 278
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.59 E-value=0.24 Score=30.33 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 777 VTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGD 810 (831)
Q Consensus 777 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 810 (831)
..|..++.+|...|++++|++.+++..+ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 3456666677777777777777777666 4554
No 279
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.59 E-value=12 Score=37.54 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 759 DGITVFNEISDRGLEPDTVTYTALL 783 (831)
Q Consensus 759 ~A~~~~~~~~~~g~~pd~~~~~~l~ 783 (831)
++.++++.+.+.|+++....|..++
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHHH
Confidence 4555555555555555554444443
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.53 E-value=6.8 Score=34.47 Aligned_cols=87 Identities=10% Similarity=-0.153 Sum_probs=45.1
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 003315 180 YVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEA 259 (831)
Q Consensus 180 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (831)
-.+.++.+++..++..+.-..|. ....-..-...++..|++.+|+.+|+++.... |....-..|+..|....+-..=
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHH
Confidence 34566777777777766665433 33333334455667777777777777765532 3333333444444333332233
Q ss_pred HHHHHHHHhC
Q 003315 260 VEVFLEMEKA 269 (831)
Q Consensus 260 ~~~~~~m~~~ 269 (831)
...-+++.+.
T Consensus 97 r~~A~evle~ 106 (160)
T PF09613_consen 97 RRYADEVLES 106 (160)
T ss_pred HHHHHHHHhc
Confidence 3333444444
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.38 E-value=11 Score=36.19 Aligned_cols=120 Identities=23% Similarity=0.071 Sum_probs=78.3
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHhHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVT-PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA-DIPLSAFAYTVVIRWFCDQNKLEKAE 330 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 330 (831)
.+....+...+......... .....+......+...+++..+...+...... ..+.....+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45556666666666554211 12466677777788888888888888777652 23455666777777777788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHh
Q 003315 331 CVLLHMEKQGVVPDVYAYSALIS-GYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~li~-~~~~~~~~~~A~~~~~~~~~ 373 (831)
+.+.........+ ......... .+...|+++.|...+.+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888887754332 122222223 67778888888888887754
No 282
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.23 E-value=2.5 Score=38.10 Aligned_cols=97 Identities=12% Similarity=0.002 Sum_probs=72.3
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW 203 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 203 (831)
..-+...|.+.+|.+-|..++...|+.+... ..-.|..-+.++.+.+.++.|+.--.++++.++.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~--------------rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt- 166 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEE--------------RSILYSNRAAALIKLRKWESAIEDCSKAIELNPT- 166 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHH--------------HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-
Confidence 3346678888999999998888877655443 2335667777888889999999988888888754
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
...+...-..+|.+...++.|+.-|..+.+..
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 44455555667788888888888888888753
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.19 E-value=0.31 Score=30.47 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQIN 197 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~ 197 (831)
+..|+.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5577778888888888888887754
No 284
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.01 E-value=14 Score=36.89 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHhCC
Q 003315 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCK--FG----KINKALLLHHEMTSKG 375 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~----~~~~A~~~~~~~~~~~ 375 (831)
++...+++.|.+.|...+..+|.+....... .. ...+|.++|+.|++..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 4455667777777777666555543222222 22 2446777777777654
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.94 E-value=8.8 Score=34.27 Aligned_cols=134 Identities=10% Similarity=0.077 Sum_probs=83.1
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccC
Q 003315 642 LVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKED 721 (831)
Q Consensus 642 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 721 (831)
++...+.+.++.|+...+..+++.+.+.|++... ..++..++-||.......+-.+... ...-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~-------------~~~~ 77 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQ-------------YPPA 77 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHcc-------------ChHH
Confidence 4555566778888888999999999988886554 4444556777777766665444331 1122
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 722 VVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDE 801 (831)
Q Consensus 722 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~ 801 (831)
..-|.+++.++.. .+..++..+...|++-+|+++....... +......++.+-.+.+|...-..+++-
T Consensus 78 ~Ql~lDMLkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 78 YQLGLDMLKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred HHHHHHHHHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445555555542 3566777888999999999998875321 111223456666666665544444444
Q ss_pred HHh
Q 003315 802 MSV 804 (831)
Q Consensus 802 ~~~ 804 (831)
...
T Consensus 146 f~~ 148 (167)
T PF07035_consen 146 FEE 148 (167)
T ss_pred HHH
Confidence 443
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.90 E-value=0.42 Score=29.31 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGF 201 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 201 (831)
.+|..++.+|...|++++|+..|+++++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4677888888888888888888888887653
No 287
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.81 E-value=1.3 Score=42.10 Aligned_cols=86 Identities=16% Similarity=0.129 Sum_probs=46.3
Q ss_pred ChhhHHHHHHHHHH-----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC----------------hHHHHHH
Q 003315 204 SICSCNYFMNQLVE-----CGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS----------------MQEAVEV 262 (831)
Q Consensus 204 ~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------~~~A~~~ 262 (831)
|-.+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+..- -+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44455555544433 23455555566667777777777777777766543221 1234455
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003315 263 FLEMEKAGVTPNAFAYSTCIEGLCMNG 289 (831)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~l~~~~~~~~ 289 (831)
+++|...|+.||..+-..|++++.+.+
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 555555555555555555555544443
No 288
>PRK09687 putative lyase; Provisional
Probab=91.59 E-value=16 Score=36.42 Aligned_cols=204 Identities=11% Similarity=0.017 Sum_probs=125.2
Q ss_pred CcccHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCC
Q 003315 585 KKSSCNKLITNLLILRDN----NNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEM-----EQAQLVFNVLVDKGLTPH 655 (831)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~p~ 655 (831)
|+..-...++++...|+. +++...+..+... .++..+-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444455555566666553 3456666555332 46666665666666554421 223333333333 346
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHc
Q 003315 656 LVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEM 735 (831)
Q Consensus 656 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 735 (831)
..+-...+.++.+.|+ ++|+..+-.+++ .+|...-...+.+++..+. +...+...+..+..
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~--------------~~~~~~~~L~~~L~- 202 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKY--------------DNPDIREAFVAMLQ- 202 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCC--------------CCHHHHHHHHHHhc-
Confidence 6666677777777776 567777777775 3454455555555554211 12345555555552
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003315 736 GIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKS 815 (831)
Q Consensus 736 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~ 815 (831)
.+|...-...+.++.+.|. .+|+..+-+..+.+ + .....+.++...|+ ++|+..+..+.. -.||..+..
T Consensus 203 --D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~-~~a~p~L~~l~~--~~~d~~v~~ 271 (280)
T PRK09687 203 --DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGD-KTLLPVLDTLLY--KFDDNEIIT 271 (280)
T ss_pred --CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCC-HhHHHHHHHHHh--hCCChhHHH
Confidence 4566777778888988888 67887777777542 3 34567888999999 579999999987 466888777
Q ss_pred HHHHHHHh
Q 003315 816 SLERGIEK 823 (831)
Q Consensus 816 ~l~~~~~~ 823 (831)
..+.++.+
T Consensus 272 ~a~~a~~~ 279 (280)
T PRK09687 272 KAIDKLKR 279 (280)
T ss_pred HHHHHHhc
Confidence 77776654
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.49 E-value=0.25 Score=30.45 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGI 190 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~ 190 (831)
++.+|..++..|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 7789999999999999999986
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.47 E-value=2.2 Score=41.61 Aligned_cols=77 Identities=19% Similarity=0.193 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSV-----KGIQGDDYTKSSL 817 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~pd~~~~~~l 817 (831)
++..++..+...|+++.+.+.++++.+. -+-|...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 6677888899999999999999999986 344788999999999999999999999998875 4899998877766
Q ss_pred HHH
Q 003315 818 ERG 820 (831)
Q Consensus 818 ~~~ 820 (831)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 291
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.38 E-value=2.6 Score=40.23 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 003315 674 EARDVFNDMKQRGITPDVVTYTVLFDAHSKI 704 (831)
Q Consensus 674 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 704 (831)
=++.++++|...|+-||..+-.+++.++++-
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~ 171 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRW 171 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccc
Confidence 3678899999999999999988898888763
No 292
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.10 E-value=29 Score=38.66 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=92.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCc-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVW-SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
.=++.+.+.+++++|+.+-......-... -.......+.-|...|++++|-...-.|.. .+..-|..-+..+...
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 34567788899999998866544332110 123456677777888899999888888774 4666777777777766
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 003315 254 GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVL 333 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 333 (831)
++......+ +.......+...|..++..+.. .+. .-|.+.++. +|.+...-...+.+ ...
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~-Wp~~Lys~l~iisa---------~~~-- 496 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE-WPGHLYSVLTIISA---------TEP-- 496 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh-CChhhhhhhHHHhh---------cch--
Confidence 665443332 2221112345567777766655 222 222222222 22222111111111 111
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 334 LHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 334 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
+..+. -. +...-..|+..|...+++++|+.++-...+
T Consensus 497 -q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 497 -QIKQN-SE-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred -HHHhh-cc-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 11111 11 223334477788888888888877766543
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.09 E-value=0.51 Score=29.49 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 778 TYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 778 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
+|..|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777788888888888888877543
No 294
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.00 E-value=2.3 Score=41.42 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHH
Q 003315 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEK-----AGVTPNAFAYS 279 (831)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 279 (831)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3455666666777777777777777777654 45666777777777777777777777776654 35566655544
Q ss_pred HHHHH
Q 003315 280 TCIEG 284 (831)
Q Consensus 280 ~l~~~ 284 (831)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44333
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.91 E-value=0.6 Score=28.51 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRG 200 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 200 (831)
.++..++..+...|++++|++.|+++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456788888888888888888888887764
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.91 E-value=11 Score=33.28 Aligned_cols=51 Identities=16% Similarity=-0.053 Sum_probs=22.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 288 NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
.++.+++..++..+.-.. |-.+..-..-...++..|++.+|..+|+++.+.
T Consensus 23 ~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred cCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344444444444444332 222222233334444555555555555555443
No 297
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.88 E-value=39 Score=39.73 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHH
Q 003315 429 GEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFK 474 (831)
Q Consensus 429 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 474 (831)
++++.|+..+.++.. ..|.-.+..--+.|-+.+|+.++.
T Consensus 894 ~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly~ 932 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALYK 932 (1265)
T ss_pred HHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhheec
Confidence 456666666555442 133333444445666666666653
No 298
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.83 E-value=31 Score=38.44 Aligned_cols=179 Identities=12% Similarity=0.066 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHHHcCCCcChhhHHHHHHHHH-----HcCChhHHHHHHHHHHh-------cCCCCChhhHHHHHHHHHhc
Q 003315 186 FDEGIDILFQINRRGFVWSICSCNYFMNQLV-----ECGKVDMALAVYQHLKR-------LGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 253 (831)
...|...++.+.+.| +......++.++. ...+.+.|...|+...+ .+ .+.....+...|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888888888776 3444444444433 44678899999988866 44 344666777777764
Q ss_pred C-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hc
Q 003315 254 G-----SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM-NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFC----DQ 323 (831)
Q Consensus 254 g-----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 323 (831)
. +.+.|+.++.+..+.| .|+.......+.-... ..+...|.++|......|. ...+..+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcC
Confidence 3 5677999998888877 4555444333322222 2467789999999888873 333333444333 23
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003315 324 NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGI 376 (831)
Q Consensus 324 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 376 (831)
.+.+.|..++.+..+.| .|....-...+..+.. ++++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 46788888888888876 2222222222333333 777777766666666554
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.81 E-value=2.8 Score=38.28 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=61.2
Q ss_pred HcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 734 EMGIRPDV-ISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPD--TVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGD 810 (831)
Q Consensus 734 ~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 810 (831)
+..++-+. ..+..++.-|++.|+.++|++.+.++.+....+. ...+-.+++...-.|++..+...+.+....--.++
T Consensus 28 ~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 28 SNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 33344444 4788999999999999999999999998755554 34577889999999999999999888765433334
Q ss_pred HHHHH
Q 003315 811 DYTKS 815 (831)
Q Consensus 811 ~~~~~ 815 (831)
+....
T Consensus 108 d~~~~ 112 (177)
T PF10602_consen 108 DWERR 112 (177)
T ss_pred hHHHH
Confidence 34333
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.57 E-value=0.31 Score=30.00 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=17.1
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHHcCChhHHH
Q 003315 193 LFQINRRGFVWSICSCNYFMNQLVECGKVDMAL 225 (831)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 225 (831)
|+++++.+|. +..+++.+..+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3444454433 5555555666666666555553
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.40 E-value=3.4 Score=37.68 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA--FAYSTCIEGLCMNGMLDLGYELLLKWEE 303 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (831)
.+..+...|++.|+.+.|++.|.++.+....+.. ..+..+|+.....+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556666677777777777777776664333322 2445555666666666666655555443
No 302
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.94 E-value=13 Score=38.64 Aligned_cols=65 Identities=11% Similarity=0.081 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEP---DTVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
...+|..++..+.+.|+++.|...+.++...+..+ ++.+...-...+...|+.++|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34588889999999999999999999998643211 344455556778899999999999988887
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.13 E-value=6.9 Score=31.08 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 759 DGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEK 823 (831)
Q Consensus 759 ~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 823 (831)
+..+-++.+....+.|++.+..+.+++|.+.+|+..|+++++.+..+ ..+....|..++..+.-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqElkP 91 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQELKP 91 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHHhh
Confidence 56666777777778899999999999999999999999999888765 23333367777665543
No 304
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.94 E-value=3.5 Score=36.79 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 757 LEDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGD-----------LDRAIALVDEMSVKGIQGDDYTKSSLERGIEK 823 (831)
Q Consensus 757 ~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 823 (831)
+++|+.-|++++. +.|+ ..++..|+.+|...+. +++|.+.|++... .+|++..|+.-+....|
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh
Confidence 4566666666665 6787 4677788887776542 5667777777777 79999999876655443
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.83 E-value=15 Score=31.84 Aligned_cols=53 Identities=11% Similarity=-0.107 Sum_probs=36.4
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
...++++++..+++.+.-..|. ....-..-...++..|++++|.++|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3477888888888877766543 3333334455677888888888888887764
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.67 E-value=17 Score=32.45 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=13.3
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003315 335 HMEKQGVVPDVYAYSALISGYCKFGKIN 362 (831)
Q Consensus 335 ~~~~~~~~p~~~~~~~li~~~~~~~~~~ 362 (831)
.+.+.++.|+...+..+++.+.+.|++.
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3334444445555555555555555433
No 307
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.60 E-value=2.1 Score=29.55 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 780 TALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEK 823 (831)
Q Consensus 780 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 823 (831)
..+.-++.+.|++++|.++.+.+++ ++|+..-...|...+.+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHH
Confidence 3456678888888888888888888 78888877777665543
No 308
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.17 E-value=0.84 Score=27.89 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 778 TYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 778 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776665
No 309
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.14 E-value=4.6 Score=36.50 Aligned_cols=93 Identities=14% Similarity=0.000 Sum_probs=50.0
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 003315 460 YCLQGKLGDALDLFKEMKEMGHKPD----IITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGR 535 (831)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 535 (831)
+...|++++|..-|...++..+... ...|..-..++.+.+.++.|++-..+.++.+ +........-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 4566667777666666665432211 1223333445556666666666666666654 2222333333445666666
Q ss_pred HHHHHHHHHHhhhCCCCC
Q 003315 536 VEEAEAFLDGLKGKCLEN 553 (831)
Q Consensus 536 ~~~a~~~~~~~~~~~~~~ 553 (831)
+++|..-++++.+.+|..
T Consensus 184 ~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHHHhCcch
Confidence 666666666666655543
No 310
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.14 E-value=25 Score=33.59 Aligned_cols=191 Identities=14% Similarity=0.081 Sum_probs=114.7
Q ss_pred CChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---C--CCcCh
Q 003315 131 GWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR---G--FVWSI 205 (831)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~--~~~~~ 205 (831)
...++|++.|.++++..++.. .+--.+.-..++.+.+.+++++.+..|.+++.. . -.-+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKg---------------eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE 105 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKG---------------EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE 105 (440)
T ss_pred cCHHHHHHHHHHHHhcccccc---------------hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH
Confidence 356677777777777654321 112234557888999999999999999987532 1 12345
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCC--
Q 003315 206 CSCNYFMNQLVECGKVDMALAVYQHLKRL-GLSLNEY----TYVIVIKALCKKGSMQEAVEVFLEMEKAGV----TPN-- 274 (831)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~----~p~-- 274 (831)
.+.|.++.-.+...+.+.....|+.-++. .-..|.. |-.-|...|...|.+.+..++++++...-. ..|
T Consensus 106 KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k 185 (440)
T KOG1464|consen 106 KSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK 185 (440)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh
Confidence 67888888888778887777777654421 0012222 335677778888888888888888764311 111
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCChhhHHHHHH-----HHHhcCCHhHHHH-HHHHHH
Q 003315 275 -----AFAYSTCIEGLCMNGMLDLGYELLLKWEEAD-IPLSAFAYTVVIR-----WFCDQNKLEKAEC-VLLHME 337 (831)
Q Consensus 275 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~-----~~~~~g~~~~A~~-~~~~~~ 337 (831)
...|..-|+.|-.+.+-..-..+|++.+... --|.+... ..|+ +..+.|++++|.. .|+...
T Consensus 186 KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 186 KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 2356666677777777777777777765432 12333222 2222 3345667776643 334333
No 311
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.00 E-value=27 Score=33.93 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSV-----KGIQGDDYTKS 815 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~pd~~~~~ 815 (831)
+++.....|..+|++.+|+++.++.++. -+.+...+..|+..+...||--.|.+.++++.+ .|+.-|+..+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 4456667889999999999999999874 344677889999999999998888888777653 37777776543
No 312
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.99 E-value=21 Score=32.55 Aligned_cols=91 Identities=14% Similarity=-0.040 Sum_probs=49.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003315 283 EGLCMNGMLDLGYELLLKWEEADI--PLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGK 360 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 360 (831)
..+...|++++|...++....... .....+-..|.+.....|.+++|+..++.....+.. ......-.+++...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCc
Confidence 445566666666666665554310 111223344556666667777777776665543221 1122333456666677
Q ss_pred hHHHHHHHHHHHhCC
Q 003315 361 INKALLLHHEMTSKG 375 (831)
Q Consensus 361 ~~~A~~~~~~~~~~~ 375 (831)
-++|..-|++.+..+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 777777776666654
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.80 E-value=4.4 Score=31.75 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=24.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 760 GITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMS 803 (831)
Q Consensus 760 A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 803 (831)
+.+-++.+....+.|++.+..+-+++|.+.+|+..|.++++...
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444555666666666666666666666666665554
No 314
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.79 E-value=50 Score=36.75 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=60.2
Q ss_pred hcCCCCChhhHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CC
Q 003315 233 RLGLSLNEYTYV-----IVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA-DI 306 (831)
Q Consensus 233 ~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 306 (831)
..|++.+..-|. .++.-+...+.+..|+++-+-+...-.. +...|.....-+.+..+. .-.++++.+.++ +.
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~-~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDK-MDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCc-cchHHHHHHHHHhcc
Confidence 446665555443 4566777888999999988776532111 145666666666665322 112223333222 11
Q ss_pred -CCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 003315 307 -PLSAFAYTVVIRWFCDQNKLEKAECVLLH 335 (831)
Q Consensus 307 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 335 (831)
-.....|..+++.....|+.+-|..+++.
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 13445677788888888998888887765
No 315
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.34 E-value=53 Score=36.51 Aligned_cols=124 Identities=14% Similarity=0.141 Sum_probs=73.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003315 559 NGYCKTGHTKEAFQLFMRLSNQG-VLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEM 637 (831)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 637 (831)
-++.--|+-++|-.++++|.... +.........++-+|+-.|+.....+++.-++.. +..|..-+..+.-++.-..++
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 34445677777777777776542 2223344556666777777777766666655542 234444444444455566677
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 003315 638 EQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKIN-CLREARDVFNDMKQ 684 (831)
Q Consensus 638 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 684 (831)
+.-..+.+-+.+. ..|.+..-.++.-+.+-.| -..+|+.+++-|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 7777777666554 4555554444444433333 35788899988875
No 316
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.32 E-value=14 Score=31.33 Aligned_cols=83 Identities=16% Similarity=0.246 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003315 738 RPDVISYTVLIAKLCNTQN---LEDGITVFNEISDRGLEPD--TVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 738 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
.++..+--.+.|++.+..+ ..+.+.+++.+.+. -.|+ .....-|.-++.+.+++++++++++.+++ .+||+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 5666777778899988775 45678888888863 2333 33444566689999999999999999998 788887
Q ss_pred HHHHHHHHHHh
Q 003315 813 TKSSLERGIEK 823 (831)
Q Consensus 813 ~~~~l~~~~~~ 823 (831)
-...|-+.+.+
T Consensus 106 Qa~~Lk~~ied 116 (149)
T KOG3364|consen 106 QALELKETIED 116 (149)
T ss_pred HHHHHHHHHHH
Confidence 76666655544
No 317
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.29 E-value=60 Score=37.08 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 661 MMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 661 ~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
.|+..+...|++++|...++++...
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6778888889999999888887754
No 318
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.93 E-value=12 Score=33.49 Aligned_cols=33 Identities=9% Similarity=-0.045 Sum_probs=19.8
Q ss_pred ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc
Q 003315 185 MFDEGIDILFQINRRGFVWSICSCNYFMNQLVEC 218 (831)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (831)
.+++|+.-|++++..+|. ...++..+.++|...
T Consensus 50 miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPN-KHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH
Confidence 456666667777776644 456666677766543
No 319
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.11 E-value=8.8 Score=37.46 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=58.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHH
Q 003315 655 HLVTYTMMIHGYCKINCLREARDVFNDMKQR---GITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNE 731 (831)
Q Consensus 655 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 731 (831)
...+...++..-....+++++...+-++... -..|+.. ....+..|.+ -++++++.++..
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk----------------y~pq~~i~~l~n 125 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK----------------YDPQKAIYTLVN 125 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc----------------cChHHHHHHHhC
Confidence 3444444444444456667777666665532 1112211 1222333322 245677777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 732 MKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDR 770 (831)
Q Consensus 732 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 770 (831)
=++.|+-||..+.+.+++.+.+.+++.+|..+...|+..
T Consensus 126 pIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 126 PIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 777788888888888888888888888877777776643
No 320
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.01 E-value=4.2 Score=39.94 Aligned_cols=96 Identities=15% Similarity=-0.009 Sum_probs=65.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.-+.-|.++|+|++|++.|.+.+...+- |...+..-..+|.+..++..|+.-.+..+..+ ..-+..|..-+.+--..|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 4456688899999999999987776532 77777777888889888888887777766532 111234544444444556
Q ss_pred ChHHHHHHHHHHHhCCCCCC
Q 003315 255 SMQEAVEVFLEMEKAGVTPN 274 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~ 274 (831)
...+|.+-++..++. .|+
T Consensus 180 ~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred hHHHHHHhHHHHHhh--Ccc
Confidence 666666666666654 455
No 321
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.59 E-value=50 Score=34.51 Aligned_cols=97 Identities=6% Similarity=0.022 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
............|.|+.+...+..+.+.- .....+...+++...+.|+++.|..+-+-|+...+. ++..........-
T Consensus 325 ~i~l~~~i~~~lg~ye~~~~~~s~~~~~~-~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~ 402 (831)
T PRK15180 325 LIQLRSVIFSHLGYYEQAYQDISDVEKII-GTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSAD 402 (831)
T ss_pred hhHHHHHHHHHhhhHHHHHHHhhchhhhh-cCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHH
Confidence 33455566677888888888776654432 223445677788888888888888888877754432 3333333233334
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 003315 252 KKGSMQEAVEVFLEMEKAG 270 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~ 270 (831)
..|-++++.-.+++....+
T Consensus 403 ~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 403 ALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHhHHHHHHHHHHHHhccC
Confidence 5577788888888776654
No 322
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.11 E-value=73 Score=36.03 Aligned_cols=61 Identities=8% Similarity=0.005 Sum_probs=37.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-------HhHHHHHHHHHHHCCC
Q 003315 280 TCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK-------LEKAECVLLHMEKQGV 341 (831)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~ 341 (831)
.+|--|.+.|++++|.++..+..+. .......+..++..|+...+ -++....|+...+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 4566678999999999988554443 34455667777777776532 2355566666665433
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.66 E-value=9 Score=35.15 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=60.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHH
Q 003315 97 EPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAM 176 (831)
Q Consensus 97 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 176 (831)
.-+.|++-|.++...+---+++....++..|. ..+.+.+..++.++++...+ +..+++..+..|
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~---------------~~~~n~eil~sL 184 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP---------------DDNFNPEILKSL 184 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC---------------CCCCCHHHHHHH
Confidence 44678888888875554558888888887776 56788899999988887443 235688899999
Q ss_pred HHHHHHcCChhHHH
Q 003315 177 IKAYVSVGMFDEGI 190 (831)
Q Consensus 177 ~~~~~~~~~~~~A~ 190 (831)
+..|.+.|+++.|-
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 99999999998874
No 324
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.03 E-value=77 Score=35.38 Aligned_cols=231 Identities=14% Similarity=0.050 Sum_probs=118.4
Q ss_pred CChHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 552 ENYSAMINGYCKTG-----HTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLIL---RDNNNALKLFKTMITLNAEPSKSM 623 (831)
Q Consensus 552 ~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~ 623 (831)
.....++.+|.+.. +.+.|+.++.+..+.|.+ .....++..+..- .+...|.++|..+...|.. +...
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~ 364 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIY 364 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHH
Confidence 33455555555432 456677777776666532 2333333333322 3456777777777776632 2222
Q ss_pred HHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 003315 624 YDKLIGAL--CQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAH 701 (831)
Q Consensus 624 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 701 (831)
+..+.... .-.-+.+.|..++.++.+.|. |....--..+..+.. +.++.+.-.+..+.+.|.+--...-..++...
T Consensus 365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~ 442 (552)
T KOG1550|consen 365 RLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQS 442 (552)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhc
Confidence 21111111 123367788888888888762 221111222233333 77777777777776655432222222222221
Q ss_pred hccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---C-ChHHHHHHHHHHHHCCCCCCHH
Q 003315 702 SKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNT---Q-NLEDGITVFNEISDRGLEPDTV 777 (831)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g-~~~~A~~~~~~~~~~g~~pd~~ 777 (831)
. ... .......+...+...|......| +......+.+.|..- + +++.|...+...-+.+ ..
T Consensus 443 ~-~~~-------~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~ 507 (552)
T KOG1550|consen 443 E-EDL-------FSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQ 507 (552)
T ss_pred c-ccc-------cccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hH
Confidence 1 000 00011335666777777666554 455555666555433 2 4788888888887654 33
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHHHHHHh
Q 003315 778 TYTALLCGYL----AKGDLDRAIALVDEMSV 804 (831)
Q Consensus 778 ~~~~l~~~~~----~~g~~~~A~~~~~~~~~ 804 (831)
....|...+- -.. +..|.++++...+
T Consensus 508 ~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 508 ALFNLGYMHEHGEGIKV-LHLAKRYYDQASE 537 (552)
T ss_pred HHhhhhhHHhcCcCcch-hHHHHHHHHHHHh
Confidence 3333433322 233 6888888887766
No 325
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.99 E-value=57 Score=33.84 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=44.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVLV---KKSSCNKLITNLLILRDNNNALKLFKTMIT 614 (831)
Q Consensus 554 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (831)
|..+...+.+.|+++.|...+.++...+... .+.....-+..+...|+..+|+..++....
T Consensus 149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6667777788888888888888877654322 345555566777778888888888877776
No 326
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.64 E-value=0.065 Score=47.26 Aligned_cols=53 Identities=21% Similarity=0.165 Sum_probs=29.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003315 317 IRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHH 369 (831)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 369 (831)
+..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444555556666666666654444455666666666666665566555554
No 327
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.56 E-value=80 Score=35.22 Aligned_cols=42 Identities=7% Similarity=0.060 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHH-HcCCCcChhhHHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQIN-RRGFVWSICSCNYFM 212 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~l~ 212 (831)
.+-..+-+.|...|+|++|++.--.+- ..++.++......++
T Consensus 60 ~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etiv 102 (929)
T KOG2062|consen 60 LAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIV 102 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHH
Confidence 344566778888899999888744432 233444444444444
No 328
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.44 E-value=48 Score=32.55 Aligned_cols=142 Identities=10% Similarity=0.119 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHH-HcCCCCCHHHHHHH
Q 003315 670 NCLREARDVFNDMKQ-RGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMK-EMGIRPDVISYTVL 747 (831)
Q Consensus 670 g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~l 747 (831)
....+|+.+|+..-- ..+--|..+...++.....-. +.....-.++.+-+. +.+-.++..+....
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~-------------~~~l~alYEvV~~l~~t~~~~l~~~vi~~I 208 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDE-------------NTKLNALYEVVDFLVSTFSKSLTRNVIISI 208 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcc-------------ccchhhHHHHHHHHHhccccCCChhHHHHH
Confidence 345667777763211 124445556666666554310 011111122222222 34567888888899
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCCHHHHHHHHHHH
Q 003315 748 IAKLCNTQNLEDGITVFNEISDR-GLEPDTVTYTALLCGYLAKGDLDRAIALVDE-----MSVKGIQGDDYTKSSLERGI 821 (831)
Q Consensus 748 ~~~~~~~g~~~~A~~~~~~~~~~-g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~g~~pd~~~~~~l~~~~ 821 (831)
+..+++.++|.+-.++++..... +..-|...|..++..-...||.+-...++++ +.+.|+.-+...-..+-+-+
T Consensus 209 l~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 209 LEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 99999999999999999998754 5566889999999999999998888877766 34556666666666655555
Q ss_pred Hhc
Q 003315 822 EKA 824 (831)
Q Consensus 822 ~~~ 824 (831)
.++
T Consensus 289 ~~v 291 (292)
T PF13929_consen 289 KKV 291 (292)
T ss_pred Hhc
Confidence 443
No 329
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.28 E-value=7.2 Score=38.41 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=25.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhhHHHHHHHH
Q 003315 422 VDSLCKLGEVEKAMILFKEMKDRQIVP-DVVNYTTMICGYCLQGKLGDALDLFKEM 476 (831)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 476 (831)
.+-|.+.|.+++|++.|...... .| +++++..-..+|.+..++..|..--...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 34455555555555555543332 22 4445555555555555555444433333
No 330
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.22 E-value=85 Score=36.50 Aligned_cols=38 Identities=5% Similarity=0.041 Sum_probs=25.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003315 495 FAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCM 532 (831)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 532 (831)
+......+.+..+++.+....-.++....+.++..|++
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 44556667777777777766555566666777666654
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.09 E-value=3 Score=26.77 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 777 VTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 777 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
.+++.|...|...|++++|.+++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776653
No 332
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.97 E-value=2.2 Score=25.67 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRG 200 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 200 (831)
++..++.++.+.|++++|+..|+++++.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34466777777777777777777776653
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.82 E-value=3.3 Score=25.15 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRG 200 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 200 (831)
.+|..++..|...|++++|...|+++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356788888888888888888888887653
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.46 E-value=3 Score=26.75 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003315 742 ISYTVLIAKLCNTQNLEDGITVFNEISD 769 (831)
Q Consensus 742 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 769 (831)
.+++.+...|...|++++|.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5788999999999999999999999875
No 335
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.44 E-value=32 Score=29.86 Aligned_cols=51 Identities=8% Similarity=-0.103 Sum_probs=24.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 288 NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
.++.+++..++..+.-.. |.....-..-...++..|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 445555555555544432 222223333344445556666666666666554
No 336
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.42 E-value=7.8 Score=41.18 Aligned_cols=102 Identities=10% Similarity=-0.008 Sum_probs=73.2
Q ss_pred CCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHH
Q 003315 130 CGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCN 209 (831)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (831)
.|+...|...+..++...|..++. ....|+....+.|..-+|-.++.+.+... ...+.++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v------------------~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~ 680 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDV------------------PLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFL 680 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcc------------------cHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHH
Confidence 677778888777766654432211 23367777778888888888888877766 33556677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 210 YFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 210 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+.+++....+.+.|++.|.+..+.. +.++..-+.|...-|
T Consensus 681 ~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 681 SLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred hcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 88888888899999999998888764 456677777776655
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.39 E-value=19 Score=38.73 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=54.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003315 562 CKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQ 641 (831)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 641 (831)
.+.|+++.|.++..+.. +..-|..|..+....+++..|.+.+.++.. |..|+-.+...|+.+.-.
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34555555555544331 344556666666666666666666555443 234444455566655544
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003315 642 LVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDM 682 (831)
Q Consensus 642 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 682 (831)
.+-....+.|.. |.-..+|...|+++++.+++.+-
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 444444444332 34445566777777777776554
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.90 E-value=2.6 Score=27.72 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 781 ALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 781 ~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
.|..+|...|+.+.|+++++++..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 355666666666666666666665
No 339
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.45 E-value=1e+02 Score=34.93 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHc---cCChhhHHHHHHHHHH
Q 003315 451 VNYTTMICGYCL---QGKLGDALDLFKEMKE 478 (831)
Q Consensus 451 ~~~~~li~~~~~---~g~~~~A~~~~~~~~~ 478 (831)
.-+..||..|.+ ..++.+|++++--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345666666654 3466666666665543
No 340
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.32 E-value=13 Score=29.34 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 721 DVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALL 783 (831)
Q Consensus 721 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~ 783 (831)
+.-+..+-++.+...++.|++....+.++++.+.+++.-|+.+|+-...+ +..+..+|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 44566777777778899999999999999999999999999999988854 333444565554
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.09 E-value=13 Score=34.04 Aligned_cols=72 Identities=19% Similarity=0.109 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHhHH
Q 003315 257 QEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA---DIPLSAFAYTVVIRWFCDQNKLEKA 329 (831)
Q Consensus 257 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 329 (831)
+.|++.|-.+...+.-.++.....|...|. ..|.++++.++....+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555554443333333333333332 44455555555555443 1134455555555555555555544
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.04 E-value=2.2 Score=24.17 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILF 194 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~ 194 (831)
+...++..+...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34566777777777777776654
No 343
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.97 E-value=50 Score=31.12 Aligned_cols=22 Identities=5% Similarity=0.356 Sum_probs=13.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCC
Q 003315 251 CKKGSMQEAVEVFLEMEKAGVT 272 (831)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~~~~ 272 (831)
...+++.+|+++|++.....+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3456677777777776655433
No 344
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=80.88 E-value=81 Score=33.47 Aligned_cols=65 Identities=12% Similarity=-0.044 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHH-HHHcCChhHHHHHHHHHHhc
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQ-LVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~ 234 (831)
+...|...+.-+-+.+.+.+.-.+|.+++...+. ++..|-....- |-....++.|..+|..-++.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 4445555555555555566666666666655432 33333322222 22223366666666665554
No 345
>PRK09687 putative lyase; Provisional
Probab=80.74 E-value=64 Score=32.15 Aligned_cols=157 Identities=13% Similarity=-0.070 Sum_probs=80.5
Q ss_pred cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh----HHHHHHHHHHHhCCCCCCHHHH
Q 003315 203 WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSM----QEAVEVFLEMEKAGVTPNAFAY 278 (831)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~~~ 278 (831)
++.......+..+...|. +.+...+..+.+ .+|+..-...+.++.+.|+. .++...+..+... .|+...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455566666666766664 334444444443 24666666666777777763 4567777666433 4565555
Q ss_pred HHHHHHHHhcCCh-----hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003315 279 STCIEGLCMNGML-----DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALIS 353 (831)
Q Consensus 279 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 353 (831)
...+.+++..+.. ..+...+..... .++..+....+.++.+.++ +++...+-.+.+. +|..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5555555554321 122233222222 2255566666666666665 4455555555542 34444444444
Q ss_pred HHHhcC-ChHHHHHHHHHHH
Q 003315 354 GYCKFG-KINKALLLHHEMT 372 (831)
Q Consensus 354 ~~~~~~-~~~~A~~~~~~~~ 372 (831)
++.+.+ +.+.+...+..++
T Consensus 182 aLg~~~~~~~~~~~~L~~~L 201 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAML 201 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHh
Confidence 444432 1334444444444
No 346
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.71 E-value=10 Score=34.94 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=32.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 747 LIAKLCNTQNLEDGITVFNEISDRGLEP-DTVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 747 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
-+..+.+.+.+++|+...+.-++. +| |..+...|+..|+-.|++++|..-++-...
T Consensus 7 t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 344455666666666666655542 33 333444556666666666666666665554
No 347
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.07 E-value=2.3 Score=25.55 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 781 ALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 781 ~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
.++.++.+.|++++|.+.|+++.+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555666666666666666655
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.34 E-value=49 Score=35.82 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=23.6
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 321 CDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEM 371 (831)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~ 371 (831)
.+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34455555555443322 4445555666666666666555555543
No 349
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.94 E-value=20 Score=35.18 Aligned_cols=51 Identities=14% Similarity=0.309 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 635 EEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 635 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
-+++++..++..=++.|+-||..+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 356677777777777888888888888888888888888888777766644
No 350
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.85 E-value=34 Score=27.38 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=35.6
Q ss_pred chhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHH
Q 003315 151 NFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMN 213 (831)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 213 (831)
.++++.-+..+...+..+.|.+....+++|.+.+++..|+.+++-+...- .+....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 34444445555566677777777788888888888888888877665442 222325555543
No 351
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.36 E-value=73 Score=30.94 Aligned_cols=85 Identities=16% Similarity=0.104 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHH
Q 003315 745 TVLIAKLCNTQNLEDGITVFNEISD----RGLEPDTVTYTAL-LCGYLAKGDLDRAIALVDEMSVK----GIQGDDYTKS 815 (831)
Q Consensus 745 ~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~pd~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~----g~~pd~~~~~ 815 (831)
..++..+.+.|.+.+|+.+++.+.. ..-+|+..+...+ -.+|..-.++.++..-+...... -++|-...--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 4578889999999999988776542 2334443332222 23455555555555444433221 2345555555
Q ss_pred HHHHHHHhcccccc
Q 003315 816 SLERGIEKARILQY 829 (831)
Q Consensus 816 ~l~~~~~~~~~~~~ 829 (831)
.|.+|+..+...+|
T Consensus 209 DL~sGIlhcdd~dy 222 (421)
T COG5159 209 DLLSGILHCDDRDY 222 (421)
T ss_pred HHhccceeeccccc
Confidence 66666666655443
No 352
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.16 E-value=1.5e+02 Score=33.81 Aligned_cols=253 Identities=9% Similarity=-0.007 Sum_probs=125.4
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 003315 428 LGEVEKAMILFKEMKDRQ-IVPD--VVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKA 504 (831)
Q Consensus 428 ~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 504 (831)
..+.+.|..++....... ..+. ...+..+.......+..++|...+....... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345677888887764332 2111 1223334333333333556666666543321 2444445555555678888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHH-HHHhCCCC
Q 003315 505 FDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFM-RLSNQGVL 583 (831)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~ 583 (831)
...+..|.... .....-.-=+..++...|+.++|...|+.+.. ...-|..|...- .|..-. ...-. ..... .
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~-~~~fYG~LAa~~--Lg~~~~-~~~~~~~~~~~--~ 404 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ-QRGFYPMVAAQR--LGEEYP-LKIDKAPKPDS--A 404 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-CCCcHHHHHHHH--cCCCCC-CCCCCCCchhh--h
Confidence 88888875432 22333444455566668888888888888754 222233333221 121100 00000 00000 0
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhHHHH
Q 003315 584 VKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLT--PHLVTYTM 661 (831)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ 661 (831)
........-+..+...|....|...+..+... .+......+...-.+.|..+.+..........+.. --+..|..
T Consensus 405 ~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~ 481 (644)
T PRK11619 405 LTQGPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWND 481 (644)
T ss_pred hccChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHH
Confidence 00111233345566778888888888777763 34444555556566777777776655432211000 00113555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003315 662 MIHGYCKINCLREARDVFNDMKQRGITPDVV 692 (831)
Q Consensus 662 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 692 (831)
.+..+.+.-.++.++-.---..|.++.|+..
T Consensus 482 ~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 482 EFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 5555555555555543333333555666543
No 353
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.02 E-value=3.8 Score=23.20 Aligned_cols=22 Identities=41% Similarity=0.410 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 003315 779 YTALLCGYLAKGDLDRAIALVD 800 (831)
Q Consensus 779 ~~~l~~~~~~~g~~~~A~~~~~ 800 (831)
...|...+...|+.++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445556666666666665553
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.85 E-value=20 Score=33.19 Aligned_cols=55 Identities=20% Similarity=0.131 Sum_probs=25.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 003315 283 EGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEK 338 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (831)
+.+.+.+..++++...++-++.+ |.+......++..+|-.|++++|...++-..+
T Consensus 9 seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 33444444444444444444432 34444444555555555555555544444433
No 355
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.41 E-value=1.2e+02 Score=32.37 Aligned_cols=91 Identities=16% Similarity=0.033 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003315 277 AYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYC 356 (831)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 356 (831)
...+++..++.+...+-...+..++...| .+.-.+..++.+|... .-++-..+|+++.+..+. |++.-..|...|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 34444444444444444444444444432 2333444444444444 234444444444444322 3322233333332
Q ss_pred hcCChHHHHHHHHHHH
Q 003315 357 KFGKINKALLLHHEMT 372 (831)
Q Consensus 357 ~~~~~~~A~~~~~~~~ 372 (831)
+ ++..++..+|.+..
T Consensus 144 k-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 144 K-IKKSKAAEFFGKAL 158 (711)
T ss_pred H-hchhhHHHHHHHHH
Confidence 2 44444444444443
No 356
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.00 E-value=1.5e+02 Score=33.44 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHH
Q 003315 118 CTYAAIVRILCCCGWQKKLESMLLELV 144 (831)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ 144 (831)
..+...+.-|...|++++|....-.+.
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 344555555666666666655544433
No 357
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.99 E-value=40 Score=36.23 Aligned_cols=108 Identities=15% Similarity=0.054 Sum_probs=72.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003315 558 INGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEM 637 (831)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 637 (831)
+-.+.-.|+...|..++..+....+.-....+..+.+.+.+.|-..+|-.++.+.+... ...+-++-.++++|....++
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhh
Confidence 33344567777888877777666555556666777777777777777777777766655 34455666777777777778
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 003315 638 EQAQLVFNVLVDKGLTPHLVTYTMMIHGYC 667 (831)
Q Consensus 638 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 667 (831)
+.|.+.|.++.+...+ ++..-+.|...-|
T Consensus 693 ~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 8888888777776443 5555555554444
No 358
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.47 E-value=29 Score=27.59 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003315 721 DVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVD 800 (831)
Q Consensus 721 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~ 800 (831)
..++|..+-+.+...+-. ....--+-+..+...|++++|..+.+.. ..||...|.+| +-.+.|-.+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHH
Confidence 456777776666644322 2223334445678999999999988877 58999999888 4568888888888888
Q ss_pred HHHhCCCCCCHH
Q 003315 801 EMSVKGIQGDDY 812 (831)
Q Consensus 801 ~~~~~g~~pd~~ 812 (831)
+|..+| .|..-
T Consensus 93 rla~sg-~p~lq 103 (115)
T TIGR02508 93 RLAASG-DPRLQ 103 (115)
T ss_pred HHHhCC-CHHHH
Confidence 888765 34433
No 359
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.36 E-value=41 Score=26.53 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc-ChhhHHHHHHHHHHcCC
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW-SICSCNYFMNQLVECGK 220 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 220 (831)
+..+-..++..+...|++++|++.+-.+++.+... +..+-..++.++.-.|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 55677788889999999999999999988875443 23333444444444443
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.40 E-value=7.7 Score=25.53 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=12.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHH
Q 003315 316 VIRWFCDQNKLEKAECVLLHMEK 338 (831)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~ 338 (831)
|++.|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 361
>PRK11619 lytic murein transglycosylase; Provisional
Probab=72.73 E-value=1.8e+02 Score=33.17 Aligned_cols=92 Identities=8% Similarity=-0.027 Sum_probs=40.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcC
Q 003315 561 YCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITL-----NAEPSKSMYDKLIGALCQAE 635 (831)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g 635 (831)
+...|+...|...+..+... .+......+.......|..+.++......... .+ |. .|...+..+.+.-
T Consensus 417 L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf-p~--~~~~~~~~~a~~~ 490 (644)
T PRK11619 417 LMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF-PL--AWNDEFRRYTSGK 490 (644)
T ss_pred HHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC-Cc--chHHHHHHHHHHc
Confidence 34445555555555554443 13333344444444455555554444322211 11 11 2444555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhH
Q 003315 636 EMEQAQLVFNVLVDKGLTPHLVT 658 (831)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~p~~~~ 658 (831)
.++.+.-.--.-.++++.|+..+
T Consensus 491 ~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 491 GIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred CCCHHHHHHHHHHhcCCCCCCcc
Confidence 55554433333335556665543
No 362
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.65 E-value=60 Score=34.19 Aligned_cols=106 Identities=14% Similarity=-0.024 Sum_probs=68.7
Q ss_pred ccCHHHHHHHHHHHH---HcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHH-------CCCCCCH-------
Q 003315 719 KEDVVDASVFWNEMK---EMGIRPD-----VISYTVLIAKLCNTQNLEDGITVFNEISD-------RGLEPDT------- 776 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~---~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~~pd~------- 776 (831)
+|++.+|.+++...- +.|...+ -..||.|.-.+.+.|.+.-+..+|.++.+ .|++|.+
T Consensus 253 ~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n 332 (696)
T KOG2471|consen 253 HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN 332 (696)
T ss_pred hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence 466777776665432 2332222 23567777777888888888888877764 3655543
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Q 003315 777 ---VTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKAR 825 (831)
Q Consensus 777 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~~ 825 (831)
.+....+-.|...|+.-.|.+.|.+...- +.-+...|-.+.+|+..+.
T Consensus 333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHh
Confidence 12233455688889999999998887662 5667777777777776554
No 363
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=71.60 E-value=7 Score=22.56 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRR 199 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (831)
++..++..+...|++++|...|.+.++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4556777777778888888877777654
No 364
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.41 E-value=64 Score=30.57 Aligned_cols=88 Identities=10% Similarity=-0.039 Sum_probs=59.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCh
Q 003315 178 KAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY-TYVIVIKALCKKGSM 256 (831)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 256 (831)
..|...++++.|+..|.+++..++. .+.-|..-+-.+.+..+++.+..--.+.++. .||.. ...-+..+......+
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 3455567888899988888887533 2244555666777788888888777776663 45544 333455566677888
Q ss_pred HHHHHHHHHHHh
Q 003315 257 QEAVEVFLEMEK 268 (831)
Q Consensus 257 ~~A~~~~~~m~~ 268 (831)
++|+..+.+...
T Consensus 95 ~eaI~~Lqra~s 106 (284)
T KOG4642|consen 95 DEAIKVLQRAYS 106 (284)
T ss_pred cHHHHHHHHHHH
Confidence 888888888743
No 365
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.99 E-value=56 Score=31.76 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=39.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH-----
Q 003315 594 TNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCK----- 668 (831)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----- 668 (831)
+++..++++.++..+.-+-...--+....+....|-.|.+.|++..+.++-...+...-+-+...|..++..|..
T Consensus 91 QALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlP 170 (309)
T PF07163_consen 91 QALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLP 170 (309)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhc
Confidence 344444444444433332222211223334444444556666666655555555543222233345555444442
Q ss_pred cCCHHHHHHHH
Q 003315 669 INCLREARDVF 679 (831)
Q Consensus 669 ~g~~~~A~~~~ 679 (831)
.|.+++|.++.
T Consensus 171 LG~~~eAeelv 181 (309)
T PF07163_consen 171 LGHFSEAEELV 181 (309)
T ss_pred cccHHHHHHHH
Confidence 36666666555
No 366
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.74 E-value=1.1e+02 Score=29.49 Aligned_cols=170 Identities=18% Similarity=0.252 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC
Q 003315 623 MYDKLIGALCQAEEMEQAQLVFNVLVDK-----GLT------PHLVTYTMMIHGYCKINCLREARDVFNDMKQR-GITPD 690 (831)
Q Consensus 623 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~------p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~ 690 (831)
|-..|...|...|++..-.+++.++.+. |-. .-...|..=|..|..+++-.+-..+|++.+.- ...|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3345777788888888888888877642 110 12456777788888888888888888887642 22333
Q ss_pred HHHHHHHHHHhhc-cccCCCCCCCchhhcccCHHHHH-HHHHHHH---HcCCCCCHH---HHHHHHHHHHhcC-ChHHHH
Q 003315 691 VVTYTVLFDAHSK-INLKGSSSSPDALQCKEDVVDAS-VFWNEMK---EMGIRPDVI---SYTVLIAKLCNTQ-NLEDGI 761 (831)
Q Consensus 691 ~~~~~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~a~-~~~~~m~---~~~~~p~~~---~~~~l~~~~~~~g-~~~~A~ 761 (831)
.. ...+++-|+. .++ +.+.+++|. .+|+..+ +.| .|-.. -|-.|...+.+.| ++=+.
T Consensus 227 Pl-ImGvIRECGGKMHl-----------reg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iNPFDs- 292 (440)
T KOG1464|consen 227 PL-IMGVIRECGGKMHL-----------REGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGINPFDS- 292 (440)
T ss_pred hH-HHhHHHHcCCcccc-----------ccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCCCCcc-
Confidence 33 3344555542 222 345566554 3444444 344 33332 3556666666665 11111
Q ss_pred HHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 762 TVFNEISDRGLEPDT--VTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT 813 (831)
Q Consensus 762 ~~~~~~~~~g~~pd~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 813 (831)
-..+..+.|+ ...+.|+.+|.+. +.-+-.++++.=.. .+-.|...
T Consensus 293 -----QEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~~~~~-~IM~DpFI 339 (440)
T KOG1464|consen 293 -----QEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERILKSNRS-NIMDDPFI 339 (440)
T ss_pred -----cccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHHhhhc-cccccHHH
Confidence 1111233344 4567788777654 66665555544332 35445443
No 367
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.56 E-value=2e+02 Score=32.37 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=21.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003315 595 NLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEME 638 (831)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 638 (831)
...-.|+...+++...... .|..+-.++.+.+...|-++
T Consensus 306 ~~i~~~d~~~vL~~~~~~~-----~~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 306 LAIFEGDIESVLKEISSLF-----DDWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp HHHHTS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS-
T ss_pred HHHHccCHHHHHHHHHHHc-----cchhHHHHHHHHHHhcCccc
Confidence 3334677777777766542 24455666777776666555
No 368
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=69.48 E-value=1.3e+02 Score=30.21 Aligned_cols=162 Identities=14% Similarity=0.095 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCC
Q 003315 636 EMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCK----INCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSS 711 (831)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 711 (831)
+..+|..+|....+.| +......|...|.. ..+..+|...|++.-+.|..+-..+...+-..+.. +.
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~-g~----- 162 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS-GL----- 162 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc-Ch-----
Confidence 3555666666555443 22233334444443 23667777777777766654431112222222211 00
Q ss_pred CCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003315 712 SPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCN----TQNLEDGITVFNEISDRGLEPDTVTYTALLCGYL 787 (831)
Q Consensus 712 ~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~ 787 (831)
.......+...|...+.++-..+ +......+...|.. ..++++|...|.+..+.|. ......+. .+.
T Consensus 163 --~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~ 233 (292)
T COG0790 163 --QALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMY 233 (292)
T ss_pred --hhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHH
Confidence 00001223457888888887766 44444455544432 3388999999999998875 33344444 555
Q ss_pred hcC---------------CHHHHHHHHHHHHhCCCCCCHHHHH
Q 003315 788 AKG---------------DLDRAIALVDEMSVKGIQGDDYTKS 815 (831)
Q Consensus 788 ~~g---------------~~~~A~~~~~~~~~~g~~pd~~~~~ 815 (831)
..| +...|...+......|.........
T Consensus 234 ~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 234 LNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred hcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 555 8889999999999888777777666
No 369
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.43 E-value=7.9 Score=22.33 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 779 YTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 779 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
|..+..++...|+++.|...+++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34445555555555555555555443
No 370
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.36 E-value=35 Score=28.43 Aligned_cols=45 Identities=9% Similarity=0.170 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003315 725 ASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISD 769 (831)
Q Consensus 725 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 769 (831)
..+-++.+...++.|++.....-++++.+.+++.-|+.+|+-+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555555554443
No 371
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.82 E-value=51 Score=32.05 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-----ccCChhhHHHHH
Q 003315 417 CYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYC-----LQGKLGDALDLF 473 (831)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~~ 473 (831)
+...-|-.|.+.++...+.++-.......-.-+..-|.+++..|. -.|.+++|+++.
T Consensus 120 IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 333344445555555555555444443211112223444443333 235555555554
No 372
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=68.80 E-value=1.4e+02 Score=30.47 Aligned_cols=78 Identities=6% Similarity=-0.130 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCHhHHHHHH
Q 003315 257 QEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ---NKLEKAECVL 333 (831)
Q Consensus 257 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~ 333 (831)
+.-+.+++++++.+ +.+......++..+.+..+.++..+.+++++... +-+...|..++...... -.++...++|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44455566655552 2344455555555555555555556666665553 33555555555544331 2344444444
Q ss_pred HHH
Q 003315 334 LHM 336 (831)
Q Consensus 334 ~~~ 336 (831)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 443
No 373
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.45 E-value=1.7e+02 Score=31.13 Aligned_cols=50 Identities=12% Similarity=-0.041 Sum_probs=33.3
Q ss_pred HHcCCCHHHHHHHHHHhhhC-------CCC-----ChHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 530 LCMGGRVEEAEAFLDGLKGK-------CLE-----NYSAMINGYCKTGHTKEAFQLFMRLSN 579 (831)
Q Consensus 530 ~~~~g~~~~a~~~~~~~~~~-------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (831)
+.-.|++.+|.+++...--. .|. -||.|+-...+.|.+..+..+|.++.+
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~ 311 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR 311 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH
Confidence 44568888888877643211 111 167777777888888888888877764
No 374
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=68.22 E-value=3 Score=36.58 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=43.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHH
Q 003315 491 LAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEA 570 (831)
Q Consensus 491 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 570 (831)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++.... -....++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3444555566666666666666555445566666666666666665666655552211 1133444555555555555
Q ss_pred HHHHHH
Q 003315 571 FQLFMR 576 (831)
Q Consensus 571 ~~~~~~ 576 (831)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 554433
No 375
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=67.24 E-value=1.4e+02 Score=29.88 Aligned_cols=151 Identities=13% Similarity=-0.026 Sum_probs=88.7
Q ss_pred HcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc----CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----c
Q 003315 182 SVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVEC----GKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK----K 253 (831)
Q Consensus 182 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 253 (831)
..+.+..|...+......+ +......+...|... .+..+|..+|....+.| .+.....|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4556667777777666533 223444455555432 35677888888766654 33444455555554 3
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----
Q 003315 254 GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNG-------MLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD---- 322 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 322 (831)
.+..+|...|+++.+.|..+...+...+...|..-. +...|...+.++-..+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 378888888888888874433233444444444321 2235777777777665 44445555555533
Q ss_pred cCCHhHHHHHHHHHHHCCC
Q 003315 323 QNKLEKAECVLLHMEKQGV 341 (831)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~ 341 (831)
..++++|...|....+.|.
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC
Confidence 3467777777777777653
No 376
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.01 E-value=25 Score=28.88 Aligned_cols=40 Identities=25% Similarity=0.496 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 535 RVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSN 579 (831)
Q Consensus 535 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 579 (831)
++++.++.+++ ..-|..|+..|...|..++|++++.+..+
T Consensus 28 ~~~~~e~~L~~-----~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKE-----HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHH-----cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444444432 23488899999999999999999999877
No 377
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.62 E-value=52 Score=26.23 Aligned_cols=87 Identities=13% Similarity=0.097 Sum_probs=49.9
Q ss_pred ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 003315 185 MFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFL 264 (831)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (831)
..++|..+-+-+...+.. ...+-..-+..+...|+|++|..+.+.+. .||...|.+|.. .+.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 345666655554443311 22222333455667788888877766652 477777766653 36677777777777
Q ss_pred HHHhCCCCCCHHHHH
Q 003315 265 EMEKAGVTPNAFAYS 279 (831)
Q Consensus 265 ~m~~~~~~p~~~~~~ 279 (831)
+|...| .|....|.
T Consensus 93 rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 93 RLAASG-DPRLQTFV 106 (115)
T ss_pred HHHhCC-CHHHHHHH
Confidence 776665 44444443
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=65.11 E-value=1.7e+02 Score=29.95 Aligned_cols=61 Identities=7% Similarity=-0.015 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003315 222 DMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG 284 (831)
Q Consensus 222 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (831)
+.-+.++++.++.+ +.+...+..++..+.+..+.++..+.+++++... +-+...|...+..
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHH
Confidence 34456666666553 3455566666666666666666677777776652 2244455555543
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.97 E-value=17 Score=27.44 Aligned_cols=46 Identities=7% Similarity=0.148 Sum_probs=21.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 003315 753 NTQNLEDGITVFNEISDRGLEPD--TVTYTALLCGYLAKGDLDRAIAL 798 (831)
Q Consensus 753 ~~g~~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~g~~~~A~~~ 798 (831)
...+.++|+..|.+..++-..|. ..+...|+.+|...|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554322221 22344445555555555555444
No 380
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.78 E-value=15 Score=26.43 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 758 EDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 758 ~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
++..++++.+.. .+-|..-.-..+.+|...|++++|.++++++..
T Consensus 7 ~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444432 233555555667888888888888888877765
No 381
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=64.15 E-value=3.1e+02 Score=32.70 Aligned_cols=93 Identities=16% Similarity=0.111 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHH----HHH---HHcC---ChhHHHHHHHHHHhcCCCCChhhH
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFM----NQL---VECG---KVDMALAVYQHLKRLGLSLNEYTY 243 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~---~~~~---~~~~A~~~~~~~~~~~~~~~~~~~ 243 (831)
..+-.++...+.|+.|+..|+++...= +.-...|.+.. ..+ ...| .+++|+.-|+.+... +.-+--|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 555 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESF-PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEY 555 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcC-CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHH
Confidence 455567788899999999999987652 22233333322 122 2233 366777777776542 2334455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 244 VIVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
..-.-+|.+.|++++-++.+.-+.++
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 55556677888888888888777664
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.72 E-value=20 Score=27.08 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=37.6
Q ss_pred hhcccCHHHHHHHHHHHHHcCCC-CCH-HHHHHHHHHHHhcCChHHHHHHHHH
Q 003315 716 LQCKEDVVDASVFWNEMKEMGIR-PDV-ISYTVLIAKLCNTQNLEDGITVFNE 766 (831)
Q Consensus 716 ~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 766 (831)
+.......+|+..|+...+.-.. |+. .++..++.+|+..|++.+++++--.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556778899999998864333 333 3778899999999999998887443
No 383
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.36 E-value=57 Score=25.34 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=36.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHH
Q 003315 504 AFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEA 570 (831)
Q Consensus 504 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 570 (831)
+.++++...+.|+ .+......+-.+-...|+.+.|.+++..+. ++|.-+...+.++.++|+-.-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4455566665552 222222322222235567777777777777 6666677777777776655444
No 384
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.35 E-value=80 Score=25.63 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=53.6
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003315 720 EDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALV 799 (831)
Q Consensus 720 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~ 799 (831)
-..++|..+.+.+...+- .....--+.+..+.+.|++++| +..-.. ...||...|.+| +-.+.|-.+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL--~a~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAAL--CAWKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHH--HHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHH--HHHhhccHHHHHHHH
Confidence 457889999998887653 2233334555668899999999 222222 368898888877 567899999999999
Q ss_pred HHHHhCC
Q 003315 800 DEMSVKG 806 (831)
Q Consensus 800 ~~~~~~g 806 (831)
.++..+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 9887755
No 385
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.27 E-value=2e+02 Score=34.26 Aligned_cols=58 Identities=7% Similarity=-0.088 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC---hhhHHHHHHHHHHcCChhHHHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS---ICSCNYFMNQLVECGKVDMALAVY 228 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 228 (831)
+-|..+++.+-+.+-.+.+.++...+++.-++.+ ...++.+.+-....|.+-+|...+
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 3455556666666666666666655554321111 123344444455555555554443
No 386
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.23 E-value=76 Score=25.00 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=18.8
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 307 PLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 307 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
|.|......+...+...|++++|.+.+-++.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 445555666666666666666666666666554
No 387
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.23 E-value=1.5e+02 Score=28.25 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=19.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 003315 317 IRWFCDQNKLEKAECVLLHMEKQGVVPDVYAY 348 (831)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 348 (831)
+..-...+++.+|.++|+++....+..+..-|
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 33344567778888888887766554333333
No 388
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.45 E-value=4.9e+02 Score=34.13 Aligned_cols=152 Identities=9% Similarity=-0.062 Sum_probs=91.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCC--CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGF--VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
.++++-.+.+.+..|+-.+++-..... ......+-.+...|...+++|....+...-.. .|+ .+. .+-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHHHh
Confidence 566677788888888888887311110 11122233344488888888888887764111 132 232 3334567
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHhHHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAF-AYTVVIRWFCDQNKLEKAEC 331 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~ 331 (831)
.|++..|...|+.+.+.+ ++....++-++......|.++......+-...+. ++... .++.=+.+-.+.++++..+.
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 889999999999988764 3336677777777777777777666555554442 22222 22333444456677766666
Q ss_pred HHH
Q 003315 332 VLL 334 (831)
Q Consensus 332 ~~~ 334 (831)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 554
No 389
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=60.59 E-value=1.5e+02 Score=27.98 Aligned_cols=84 Identities=20% Similarity=0.337 Sum_probs=56.0
Q ss_pred ccCHHHHHHHHHHHHHcCCCC---CHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhc
Q 003315 719 KEDVVDASVFWNEMKEMGIRP---DVISYT--VLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLC----GYLAK 789 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~~~~~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~----~~~~~ 789 (831)
.+++.+|-..|.. +.|+.| |..+++ .-|....+.|++++|++.++.....-+.-|...+..|.. =..+.
T Consensus 39 ~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~ 116 (228)
T KOG2659|consen 39 HEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIRE 116 (228)
T ss_pred hccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHh
Confidence 4567776666653 445555 444553 456777999999999999998764434545545444432 35788
Q ss_pred CCHHHHHHHHHHHHh
Q 003315 790 GDLDRAIALVDEMSV 804 (831)
Q Consensus 790 g~~~~A~~~~~~~~~ 804 (831)
|..++|+++.+.=+.
T Consensus 117 ~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 117 GKTEEALEFAQTKLA 131 (228)
T ss_pred hhHHHHHHHHHHHcc
Confidence 899999998776443
No 390
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=60.05 E-value=2.4e+02 Score=30.15 Aligned_cols=98 Identities=9% Similarity=0.079 Sum_probs=64.0
Q ss_pred CCCcccH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHH-CCCCCCHh
Q 003315 583 LVKKSSC-NKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGAL---CQAEEMEQAQLVFNVLVD-KGLTPHLV 657 (831)
Q Consensus 583 ~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~-~~~~p~~~ 657 (831)
.++..++ +.++.-+.+.+-..+|...+....... +|+...|..++..= ..+| +..++.+++.+.. .| .|+.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChH
Confidence 3455554 455666677788888888888877653 56666666665432 2233 6777788887775 34 4777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
.|...+..-...|..+.+-.++.+..+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 777776666677777777766666543
No 391
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.64 E-value=1.6e+02 Score=28.02 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=66.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHHcCCH
Q 003315 595 NLLILRDNNNALKLFKTMITLNAEPSK-SMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLV-TYTMMIHGYCKINCL 672 (831)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~ 672 (831)
.|...++++.|+.-|.+++.. .|+. .-|..-+-.+.+..+++.+..--...++. .||.. ....+..++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 366777888888888877765 4555 34555666777788888877666666664 45543 344566677788888
Q ss_pred HHHHHHHHHHHH----CCCCCCHHHHHHHHHH
Q 003315 673 REARDVFNDMKQ----RGITPDVVTYTVLFDA 700 (831)
Q Consensus 673 ~~A~~~~~~m~~----~~~~p~~~~~~~ll~~ 700 (831)
++|+..+.+... ..+.|-......|..+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 888888887743 2333333444444444
No 392
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=59.07 E-value=77 Score=27.07 Aligned_cols=56 Identities=14% Similarity=0.260 Sum_probs=42.8
Q ss_pred ccCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003315 719 KEDVVDASVFWNEMKEMGIRPD--VISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTV 777 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 777 (831)
..+..+.+.+++++.+.. .|+ ..+.-.|.-++.+.+++++++++.+.+.+ .+||..
T Consensus 48 ~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred hHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 567889999999998622 333 23555666789999999999999999997 466644
No 393
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.35 E-value=56 Score=25.86 Aligned_cols=61 Identities=8% Similarity=-0.064 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 757 LEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLER 819 (831)
Q Consensus 757 ~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~ 819 (831)
..+-.+.++++..++...-+-...+|.-.|.+.|+.|.|.+-|+.=.. +.|.+-+|...+-
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmDFLm 113 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMDFLM 113 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHHHHH
Confidence 344456677777776666667777888889999999999999986554 7888887766543
No 394
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=58.24 E-value=5.6e+02 Score=33.71 Aligned_cols=293 Identities=12% Similarity=0.020 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
..+..+-..|...+++|....+... +.. .|+ ...-+-.....|+++.|...|+.+.+.+ ++...+++.++...
T Consensus 1421 ~l~fllq~lY~~i~dpDgV~Gv~~~-r~a--~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sm 1493 (2382)
T KOG0890|consen 1421 ALYFLLQNLYGSIHDPDGVEGVSAR-RFA--DPS---LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSM 1493 (2382)
T ss_pred HHHHHHHHHHHhcCCcchhhhHHHH-hhc--Ccc---HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhh
Confidence 3444555599999999999888774 221 222 2233445667899999999999999875 44577888888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh--
Q 003315 251 CKKGSMQEAVEVFLEMEKAGVTPNAFAYSTC-IEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE-- 327 (831)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-- 327 (831)
...|.++..+-..+-.... ..+....++.+ +.+-.+.++++.....+. ..+. +.+.-..++..+.+..+-+
T Consensus 1494 l~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~--e~w~~~~~g~~ll~~~~kD~~ 1567 (2382)
T KOG0890|consen 1494 LAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNI--EYWSVESIGKLLLRNKKKDEI 1567 (2382)
T ss_pred hcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccc--cchhHHHHHHHHHhhcccchh
Confidence 8889998888876665543 23444444443 344467788887776655 2211 1111111333333322211
Q ss_pred HHHHHHHHHHHC--------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCCHhhHHHHHHHHHhcCChH
Q 003315 328 KAECVLLHMEKQ--------GVVP-DVYAYSALISGYCKFGKINKALLLHHEMT-SKGIKTNCGVLSVILKGLCQKGMAS 397 (831)
Q Consensus 328 ~A~~~~~~~~~~--------~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~ 397 (831)
.-.+..+.+.+. +..- =...|..++....-.. .+.-.+.+.... ......+...|..-+..-....+..
T Consensus 1568 ~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~ 1646 (2382)
T KOG0890|consen 1568 ATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIK 1646 (2382)
T ss_pred hHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHH
Confidence 111122222221 1110 0123333333322111 111111111100 0001111111111111111111122
Q ss_pred HHHHHHHHHH-HC----CC-CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHH
Q 003315 398 ATIKQFLEFK-DM----GF-FLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALD 471 (831)
Q Consensus 398 ~a~~~~~~~~-~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 471 (831)
+-+-.++... .. +. ..-..+|....+...+.|+++.|...+-...+.+ . +..+--.+..+-..|+...|+.
T Consensus 1647 epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~ 1723 (2382)
T KOG0890|consen 1647 EPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALS 1723 (2382)
T ss_pred hHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHH
Confidence 2222222211 11 11 1124567777777777888888887766655543 2 2345556666778888888888
Q ss_pred HHHHHHHcC
Q 003315 472 LFKEMKEMG 480 (831)
Q Consensus 472 ~~~~~~~~~ 480 (831)
++++..+..
T Consensus 1724 ~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1724 VLQEILSKN 1732 (2382)
T ss_pred HHHHHHHhh
Confidence 888877543
No 395
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.22 E-value=2.1e+02 Score=28.73 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCChhhHHHHHHH-HHccCChhhHHHHHHHHHHcCCCCCcc----h
Q 003315 417 CYDVIVDSLCKLGEVEKAMILFKEMKD----RQIVPDVVNYTTMICG-YCLQGKLGDALDLFKEMKEMGHKPDII----T 487 (831)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~----~ 487 (831)
..-.....||+.|+.+.|++.++...+ .|...|+..+..-+.. |....-+.+-++..+.+.+.|...+.. +
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 344556677888888888777766443 3555565554443322 333333445555555556666544332 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003315 488 YNVLAGAFAQYGAVQKAFDLLNYMKR 513 (831)
Q Consensus 488 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 513 (831)
|..+- |....++.+|-.+|-+.+.
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 22221 2234566666666665543
No 396
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.22 E-value=2.8e+02 Score=29.85 Aligned_cols=167 Identities=5% Similarity=-0.012 Sum_probs=109.4
Q ss_pred cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 203 WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
.|.....+++..+.....+.-++.+..+++..| .+...|..++..|... ..++-..+++++.+..+ .|++.-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 355556778888888888889999999999865 6778888999999877 56788889998888643 2444444455
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC--C---hhhHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 003315 283 EGLCMNGMLDLGYELLLKWEEADIPL--S---AFAYTVVIRWFCDQNKLEKAECVLLHMEKQ-GVVPDVYAYSALISGYC 356 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~ 356 (831)
..|.+ ++.+.+..+|.++..+=+|. + ...|..+...- -.+.+....+...+... |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55544 78888888888877653221 1 12333333211 23455555555555443 22223344455556677
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 003315 357 KFGKINKALLLHHEMTSKGI 376 (831)
Q Consensus 357 ~~~~~~~A~~~~~~~~~~~~ 376 (831)
...++++|++++..+++.+-
T Consensus 217 ~~eN~~eai~Ilk~il~~d~ 236 (711)
T COG1747 217 ENENWTEAIRILKHILEHDE 236 (711)
T ss_pred cccCHHHHHHHHHHHhhhcc
Confidence 78888888888887776543
No 397
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.79 E-value=2.5e+02 Score=29.24 Aligned_cols=102 Identities=13% Similarity=0.008 Sum_probs=63.5
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-------CC-----C-------------cChhhH---HHHHHHHHHc
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR-------GF-----V-------------WSICSC---NYFMNQLVEC 218 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~-----~-------------~~~~~~---~~l~~~~~~~ 218 (831)
+....++..+...+...|+.+.|.++.++++-. .+ . -|...| -..+..+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 445567788889999999999888888886421 11 0 011112 2234556667
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 003315 219 GKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC-KKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 219 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 268 (831)
|-+..|+++.+-+...+...|+..-...|+.|+ +.++++--+++.+....
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 777777777777776654345666666666654 56666666666665443
No 398
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.62 E-value=17 Score=36.25 Aligned_cols=85 Identities=12% Similarity=-0.076 Sum_probs=51.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHH
Q 003315 497 QYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQL 573 (831)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~ 573 (831)
..|.++.|++.+...++.+ ++....|..-...+.+.++...|++-+....+.++++ |-.-..+-.-.|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3466677777777666654 4455555555556666677777777666666666655 33333444445666777666
Q ss_pred HHHHHhCCC
Q 003315 574 FMRLSNQGV 582 (831)
Q Consensus 574 ~~~~~~~~~ 582 (831)
|....+.+.
T Consensus 205 l~~a~kld~ 213 (377)
T KOG1308|consen 205 LALACKLDY 213 (377)
T ss_pred HHHHHhccc
Confidence 666666554
No 399
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=56.47 E-value=2.1e+02 Score=28.32 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHccCChhhH
Q 003315 451 VNYTTMICGYCLQGKLGDA 469 (831)
Q Consensus 451 ~~~~~li~~~~~~g~~~~A 469 (831)
..|..|+.+++.+|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3567777777777776643
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.18 E-value=2.1e+02 Score=28.21 Aligned_cols=61 Identities=8% Similarity=0.011 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 623 MYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 623 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
+++.....|..+|.+.+|.++.+..+..++ .+...|-.++..+...|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 345566788999999999999999988643 3778888999999999998888888877753
No 401
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.65 E-value=28 Score=36.53 Aligned_cols=106 Identities=14% Similarity=0.027 Sum_probs=73.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003315 176 MIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS 255 (831)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (831)
-+..+...+.++.|+..|.++++.++. .+..+..-..++.+.+++..|+.-+...++.. +-....|..-..++.+.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 344556778999999999999988643 44444445577888899999988888888754 2223345555556667778
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003315 256 MQEAVEVFLEMEKAGVTPNAFAYSTCIEGL 285 (831)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 285 (831)
+.+|+..|+..... .|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 88888888877654 67776666665544
No 402
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=55.28 E-value=3.5e+02 Score=30.43 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
+..|. .+..++-.|.+++|..++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 56665 78888999999999999843
No 403
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.14 E-value=85 Score=26.31 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003315 759 DGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGI 821 (831)
Q Consensus 759 ~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~ 821 (831)
|..+-++......+.|++.+...-+++|.+.+|+..|..+|+-+..+ +.+....|-.++..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~el 128 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKEL 128 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Confidence 45666777888889999999999999999999999999999988764 344444566555543
No 404
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=54.96 E-value=1.9e+02 Score=27.36 Aligned_cols=93 Identities=8% Similarity=-0.060 Sum_probs=47.5
Q ss_pred cCChhHHHHHHHHHH----hCCCCCC--HHHHHHHHHHHHcCCChhh-------HHHHHHHHHHhcCCCchhHHHHHHHH
Q 003315 95 RKEPKIALSFFEQLK----RSGFSHN--LCTYAAIVRILCCCGWQKK-------LESMLLELVRKKTDANFEATDLIEAL 161 (831)
Q Consensus 95 ~~~~~~A~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~-------a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (831)
..+.+.|++.|.-+. -.+-.++ ...+.+++.++-..|+.+. |...|.+..+....+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~---------- 159 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI---------- 159 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC----------
Confidence 346677777666543 1222333 4445566666655665433 3333333332211100
Q ss_pred hcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 003315 162 CGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRG 200 (831)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 200 (831)
.......+...++..+.+.|++++|...|.++...+
T Consensus 160 ---~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 160 ---EGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred ---CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 011123455566677777777777777777776654
No 405
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=53.89 E-value=31 Score=23.89 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=26.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 746 VLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALL 783 (831)
Q Consensus 746 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~ 783 (831)
.+.-++.+.|++++|.+..+.+++ +.|+..-...|-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 355578999999999999999998 688866554443
No 406
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.14 E-value=1e+02 Score=27.98 Aligned_cols=49 Identities=8% Similarity=0.082 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHcCCCCC-H-HH-----HHHHHHHHHhcCChHHHHHHHHHHHH
Q 003315 721 DVVDASVFWNEMKEMGIRPD-V-IS-----YTVLIAKLCNTQNLEDGITVFNEISD 769 (831)
Q Consensus 721 ~~~~a~~~~~~m~~~~~~p~-~-~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~ 769 (831)
..+.|+.+|+.+.+.--.|+ . .. -...+-.|.+.|.+++|.+++++..+
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 36778888887775332321 1 11 12233456677777777777777664
No 407
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=51.84 E-value=2.2e+02 Score=27.03 Aligned_cols=91 Identities=10% Similarity=-0.039 Sum_probs=59.2
Q ss_pred cCHHHHHHHHHHHH----HcCCCCCH--HHHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCC-----HHHHHH
Q 003315 720 EDVVDASVFWNEMK----EMGIRPDV--ISYTVLIAKLCNTQN-------LEDGITVFNEISDRGLEPD-----TVTYTA 781 (831)
Q Consensus 720 ~~~~~a~~~~~~m~----~~~~~p~~--~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~g~~pd-----~~~~~~ 781 (831)
...++|.+.+.-.. -.+.+|.. ..+--+.|.|-..|+ +..|.+.|.+..+..-.|. ..+...
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 34556666555443 12334443 355667788888887 4567778888776533322 344556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 782 LLCGYLAKGDLDRAIALVDEMSVKGIQGD 810 (831)
Q Consensus 782 l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 810 (831)
++....+.|+.++|.+.|.++...+-.+.
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 67778899999999999999988644433
No 408
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.59 E-value=2.5e+02 Score=27.62 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003315 741 VISYTVLIAKLCNTQNLEDGITVFNEIS----DRGLEPDTVTYT-ALLCGYLAKGDLDRAIALVDEMSVKGIQGDD 811 (831)
Q Consensus 741 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~g~~pd~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~ 811 (831)
...|-.+..-||+.++.+.+.+.+.+.. ..|.+.|..... -|+-.|....-+++-++..+.|.++|-+=+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeR 190 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWER 190 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHh
Confidence 3466667777777777777776665544 336666654432 3333344454566677777777776654433
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.00 E-value=83 Score=29.20 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 759 DGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGD 810 (831)
Q Consensus 759 ~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 810 (831)
...+..++..+ ..|++.++..++.++...|+.++|.+..+++.. +-|.
T Consensus 129 ~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP~ 176 (193)
T PF11846_consen 129 AYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARR--LYPA 176 (193)
T ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCc
Confidence 33444444544 689999999999999999999999999999988 6773
No 410
>PRK10941 hypothetical protein; Provisional
Probab=49.95 E-value=2.1e+02 Score=28.26 Aligned_cols=59 Identities=12% Similarity=0.060 Sum_probs=34.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 210 YFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 210 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
.+-.+|.+.++++.|+++.+.++... |.++.-+.--.-.|.+.|.+..|..-++..++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34455566666666666666666543 334444444455566666666666666665543
No 411
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.19 E-value=5.1e+02 Score=30.55 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINR 198 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (831)
-|..|+..|...|+.++|++++.....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 467888888888888888888887765
No 412
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=48.73 E-value=42 Score=35.27 Aligned_cols=105 Identities=10% Similarity=-0.029 Sum_probs=75.5
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW 203 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 203 (831)
+.-+.....++.|..+|.++++..++.. ..|..-..++.+.+++..|+.=+..+++..+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca-------------------~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~- 70 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCA-------------------IYFANRALAHLKVESFGGALHDALKAIELDPT- 70 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcce-------------------eeechhhhhheeechhhhHHHHHHhhhhcCch-
Confidence 3344556678888889999998866421 22334446788899999999999999888744
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
....|..-..++.+.+++.+|+..|+..... .|+.......+.-+
T Consensus 71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 71 YIKAYVRRGTAVMALGEFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred hhheeeeccHHHHhHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 4555666667777888889999999888773 57777666666554
No 413
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.13 E-value=1.5e+02 Score=25.27 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHH
Q 003315 293 LGYELLLKWEEADIPLS-AFAYTVVIRWFCDQNKLEKAECVLLH 335 (831)
Q Consensus 293 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 335 (831)
.+.++|..|...++... ...|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55555555555443322 34455555555666666666666553
No 414
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.46 E-value=45 Score=24.00 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=4.3
Q ss_pred HHHhcCChhHHHH
Q 003315 284 GLCMNGMLDLGYE 296 (831)
Q Consensus 284 ~~~~~~~~~~a~~ 296 (831)
+|...|++++|.+
T Consensus 32 gllqlg~~~~a~e 44 (62)
T PF14689_consen 32 GLLQLGKYEEAKE 44 (62)
T ss_dssp HHHHTT-HHHHHH
T ss_pred HHHHCCCHHHHHH
Confidence 3333333333333
No 415
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.23 E-value=1e+02 Score=24.40 Aligned_cols=71 Identities=10% Similarity=0.041 Sum_probs=41.5
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q 003315 751 LCNTQNLEDGITVFNEISDR----GLEPD----TVTYTALLCGYLAKGDLDRAIALVDEMSVKGI-QGDDYTKSSLERGI 821 (831)
Q Consensus 751 ~~~~g~~~~A~~~~~~~~~~----g~~pd----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~pd~~~~~~l~~~~ 821 (831)
..+.|++.+|.+.+.+..+. +...+ ....-.+.......|+.++|.+.+++.++..- .-|..+....+..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 34778888887666665543 22221 12223445667788999999999888775322 34555554444333
No 416
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.53 E-value=2.8e+02 Score=26.79 Aligned_cols=60 Identities=8% Similarity=0.040 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHH-cCChhHHHHHHHHHHh
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVE-CGKVDMALAVYQHLKR 233 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~ 233 (831)
..+++..-..|++++++..+.++...++..+..-.|.+..+|-. .|....+++++..+..
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 46788889999999999999999999888787777777766633 3555566666666553
No 417
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=46.13 E-value=6.1e+02 Score=30.57 Aligned_cols=265 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 003315 517 EPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNL 596 (831)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 596 (831)
.++..+-...+..+.+.+..+....+...+...++..-...+.++.+.+........+..+.+. +|+......+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL 708 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVL 708 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH-H
Q 003315 597 LILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLRE-A 675 (831)
Q Consensus 597 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A 675 (831)
...+..+. ..+-.+.+ .+|..+-...+.++.+.+..+.....+. .++...-...+.++...+..+. +
T Consensus 709 ~~~~~~~~--~~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~l~~~l~-------D~~~~VR~~aa~aL~~~~~~~~~~ 776 (897)
T PRK13800 709 RALRAGDA--ALFAAALG---DPDHRVRIEAVRALVSVDDVESVAGAAT-------DENREVRIAVAKGLATLGAGGAPA 776 (897)
T ss_pred HhhccCCH--HHHHHHhc---CCCHHHHHHHHHHHhcccCcHHHHHHhc-------CCCHHHHHHHHHHHHHhccccchh
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003315 676 RDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQ 755 (831)
Q Consensus 676 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 755 (831)
...+..+.. .+|...-...+.++.. .+....+...+..+.+ .+|...-...+.++.+.+
T Consensus 777 ~~~L~~ll~---D~d~~VR~aA~~aLg~---------------~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 777 GDAVRALTG---DPDPLVRAAALAALAE---------------LGCPPDDVAAATAALR---ASAWQVRQGAARALAGAA 835 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHh---------------cCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcc
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003315 756 NLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKA 824 (831)
Q Consensus 756 ~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~ 824 (831)
. +++...+..+. -.|+..+....+.++.+.+....+...+..+++ ++|..+-....+++..+
T Consensus 836 ~-~~a~~~L~~~L---~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~aL~~~ 897 (897)
T PRK13800 836 A-DVAVPALVEAL---TDPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRALAHA 897 (897)
T ss_pred c-cchHHHHHHHh---cCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHhhC
No 418
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.10 E-value=4e+02 Score=28.45 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=33.1
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccc
Q 003315 659 YTMMIHGYCK---INCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKIN 705 (831)
Q Consensus 659 ~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 705 (831)
+..++.++.+ .++.+.|+..+.+|++.|..|..+.-..++.++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3444555544 4788889999999999888888777666666665544
No 419
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=45.74 E-value=36 Score=31.89 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=41.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 751 LCNTQNLEDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT 813 (831)
Q Consensus 751 ~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 813 (831)
..+.|+.+.|.++++++.+ ..|+ ...|.-+...--+.|+++.|.+.+++.++ +.|++.-
T Consensus 5 ~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~--ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE--LDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc--CCccccc
Confidence 4566777777788877775 3443 56677777777778888888888887777 6666554
No 420
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.75 E-value=2.4e+02 Score=27.10 Aligned_cols=97 Identities=11% Similarity=-0.082 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc------CCCcCh-----------hhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRR------GFVWSI-----------CSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
+...-+.-+.+.|++.+|...|+.++-. .-+|.. ..+....+.+...|++-++++--.++++.
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4455566678889999998888775411 111211 12223334555667777777777777765
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 235 GLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
. +.|+.+|..-.++.+..-+..+|..-|...++.
T Consensus 260 ~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 260 H-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred C-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 4 456667777777777777777777777777754
No 421
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.61 E-value=87 Score=21.09 Aligned_cols=32 Identities=6% Similarity=0.142 Sum_probs=19.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 752 CNTQNLEDGITVFNEISDRGLEPDTVTYTALL 783 (831)
Q Consensus 752 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~ 783 (831)
-+.|-.+++...+++|.+.|+.-++..+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34556666666666666666666666655544
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.55 E-value=2.4e+02 Score=29.68 Aligned_cols=53 Identities=21% Similarity=0.146 Sum_probs=27.5
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCChh--hHHHHHHHHH--hcCChHHHHHHHHHHHh
Q 003315 215 LVECGKVDMALAVYQHLKRLGLSLNEY--TYVIVIKALC--KKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 215 ~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 268 (831)
+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34556666666666666654 333333 3333334433 24456666666666554
No 423
>PRK10941 hypothetical protein; Provisional
Probab=44.26 E-value=2.5e+02 Score=27.73 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 003315 744 YTVLIAKLCNTQNLEDGITVFNEISDRGLEP-DTVTYTALLCGYLAKGDLDRAIALVDEMSVKG-IQGDDYTKSSLERGI 821 (831)
Q Consensus 744 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~pd~~~~~~l~~~~ 821 (831)
.+.+-.+|.+.+++++|+...+.+.. +.| |+.-+.--+-.|.+.|.+..|..-++..++.. -.|+.......+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 35677789999999999999999998 455 46667777888999999999999999988742 235555555555555
Q ss_pred Hh
Q 003315 822 EK 823 (831)
Q Consensus 822 ~~ 823 (831)
..
T Consensus 262 ~~ 263 (269)
T PRK10941 262 EQ 263 (269)
T ss_pred hh
Confidence 43
No 424
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.80 E-value=41 Score=33.65 Aligned_cols=94 Identities=13% Similarity=-0.012 Sum_probs=71.3
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChHH
Q 003315 180 YVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNE-YTYVIVIKALCKKGSMQE 258 (831)
Q Consensus 180 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 258 (831)
....|.++.|++.|..+++.++ +....|..-..++.+.++...|++-++...+.+ ||. .-|-.-..+..-.|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHH
Confidence 3567889999999999999874 466677778888999999999999998888753 443 334444444556799999
Q ss_pred HHHHHHHHHhCCCCCCHH
Q 003315 259 AVEVFLEMEKAGVTPNAF 276 (831)
Q Consensus 259 A~~~~~~m~~~~~~p~~~ 276 (831)
|...|+...+.+..+...
T Consensus 201 aa~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHHHhccccHHHH
Confidence 999999998886655443
No 425
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.14 E-value=4.4e+02 Score=27.75 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=27.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 003315 595 NLLILRDNNNALKLFKTMITLNAEPSKS--MYDKLIGA--LCQAEEMEQAQLVFNVLVD 649 (831)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 649 (831)
.+.+.+++..|.++++.+... ++++.. .+..+..+ +|..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344556666666666666654 333333 22223222 2455566666666665554
No 426
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.83 E-value=83 Score=26.75 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 003315 724 DASVFWNEMKEMGIRPDVI-SYTVLIAKLCNTQNLEDGITVFN 765 (831)
Q Consensus 724 ~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 765 (831)
++.++|+.|...|+.-... .|......+.+.|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444444433332 44444444444444444444444
No 427
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.40 E-value=3.5e+02 Score=26.37 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 745 TVLIAKLCNTQNLEDGITVFNEISDR----GL-EPDTVTYTALLCGYLAKGDLDRAIALVDEMS 803 (831)
Q Consensus 745 ~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 803 (831)
--+..-|.+.|++++|.++|+.+... |. .+...+...|..|+.+.|+.+..+.+.-+|.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45677789999999999999998532 22 2234566778888899999998888766654
No 428
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=41.10 E-value=4.6e+02 Score=30.43 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHHH
Q 003315 722 VVDASVFWNEMK-EMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRG-------------LEPDTVTYTALLCGYL 787 (831)
Q Consensus 722 ~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-------------~~pd~~~~~~l~~~~~ 787 (831)
.++..+.++++. ..|+.-+......++. ...|++.+|+.+++++...+ -..|......++..+
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 344444444443 2455545554444432 33566666766666544321 122333344455443
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH
Q 003315 788 AKGDLDRAIALVDEMSVKGIQGDD 811 (831)
Q Consensus 788 ~~g~~~~A~~~~~~~~~~g~~pd~ 811 (831)
..|+.++++..++++...|+.+..
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~~~~ 280 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLSFST 280 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCCHHH
Confidence 347788888888888877776553
No 429
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.90 E-value=1.3e+02 Score=26.32 Aligned_cols=61 Identities=16% Similarity=0.081 Sum_probs=32.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKG 394 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 394 (831)
.+.+.+.|..++ ..-..++..+.+.++.-.|.++++++.+.++..+..|....++.+...|
T Consensus 9 ~~~lk~~glr~T-~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLT-PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334444554432 2234455555556555666666666666666555555554554444444
No 430
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=39.59 E-value=5.2e+02 Score=29.65 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=50.6
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHh
Q 003315 723 VDASVFWNEMK-EMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRG---L----------EPDTVTYTALLCGYLA 788 (831)
Q Consensus 723 ~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~----------~pd~~~~~~l~~~~~~ 788 (831)
++....+..+. ..|+..+......++.. ..|++..|+.+++++...| + ..+......|+.++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~--A~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRA--AAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 33344444433 34555565555555532 2477777777776665432 1 1122334455555444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 789 KGDLDRAIALVDEMSVKGIQGDDYT 813 (831)
Q Consensus 789 ~g~~~~A~~~~~~~~~~g~~pd~~~ 813 (831)
++...++++++++...|+.+....
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~~~l 282 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFDNAL 282 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHHH
Confidence 788888888888888887776543
No 431
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.29 E-value=68 Score=18.57 Aligned_cols=28 Identities=4% Similarity=0.203 Sum_probs=14.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 755 QNLEDGITVFNEISDRGLEPDTVTYTALL 783 (831)
Q Consensus 755 g~~~~A~~~~~~~~~~g~~pd~~~~~~l~ 783 (831)
|+.+.|.++|+++... .+-+..+|...+
T Consensus 1 ~~~~~~r~i~e~~l~~-~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEK-FPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHH-CCCChHHHHHHH
Confidence 3455666666666653 233444454443
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.03 E-value=1.7e+02 Score=25.58 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=29.4
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
+.+.|.+.+.. -..++..+...++.-.|.++|+++.+.+...+..|-..-++.+...|
T Consensus 12 lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 12 LKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444443322 34555666666555666666666666554444444444444444444
No 433
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=38.74 E-value=4.1e+02 Score=26.42 Aligned_cols=116 Identities=9% Similarity=0.061 Sum_probs=63.7
Q ss_pred cCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-ChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHhH
Q 003315 253 KGSMQEAVEVFLEMEK-AGVTPNAFAYSTCIEGLCM-NG-MLDLGYELLLKWEEA-DIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
+....+|+++|+.... ..+--|..+...+++.... .+ ....-.++..-+... +-.++..+...+++.+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445667777763221 2234566666666666554 22 112222333333322 234555566667777777777777
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003315 329 AECVLLHMEKQ-GVVPDVYAYSALISGYCKFGKINKALLLH 368 (831)
Q Consensus 329 A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 368 (831)
-.+.++..... ++..|...|..+|....+.|+..-...+.
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 77777666554 44456666777777777777765544443
No 434
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.42 E-value=1.1e+02 Score=24.21 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=10.9
Q ss_pred HhcCChHHHHHHHHHHHh
Q 003315 251 CKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~ 268 (831)
.+.|++.+|.+.+.+..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD 26 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFD 26 (94)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 456777777665555543
No 435
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.42 E-value=3.7e+02 Score=25.92 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHC---CCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhC
Q 003315 758 EDGITVFNEISDR---GLEPDTVTYTALLC-----GYLAKGDLDRAIALVDEMSVK 805 (831)
Q Consensus 758 ~~A~~~~~~~~~~---g~~pd~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~ 805 (831)
++|.+.|+++.+. .++|...++-.|+- -|--.|+.++|.++.++....
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5566666665421 25666554433321 234589999998887776543
No 436
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=38.04 E-value=4.9e+02 Score=27.14 Aligned_cols=53 Identities=9% Similarity=-0.108 Sum_probs=26.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-hcCChHHHHHHHHH
Q 003315 353 SGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLC-QKGMASATIKQFLE 405 (831)
Q Consensus 353 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~ 405 (831)
....+.|-+..|+++.+-+...+..-|+......|+.|+ +.++++-.+++++.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 444555556666666555555544444444444444443 33444444444443
No 437
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=37.97 E-value=5.1e+02 Score=27.36 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003315 624 YDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSK 703 (831)
Q Consensus 624 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 703 (831)
...|+.-|...|++.+|.+...++--- +--....+.+++.+.-+.|+-...+.+++..-..| .+|-+-+-.++.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 445778899999999999998876431 11145678899999999998888888888876654 3455555555544
No 438
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.32 E-value=39 Score=28.63 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=19.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003315 668 KINCLREARDVFNDMKQRGITPDVVTYTVLFDA 700 (831)
Q Consensus 668 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 700 (831)
..|.-.+|..+|++|++.|-.|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34555667777777777777776 35555544
No 439
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.29 E-value=46 Score=28.23 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=22.3
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 215 LVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 215 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
+...|.-..|..+|..|++.|-+|| .|+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3445666777888888888776665 56666644
No 440
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.94 E-value=8.7e+02 Score=29.45 Aligned_cols=184 Identities=12% Similarity=0.022 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-----hhhHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN-----EYTYVIV 246 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l 246 (831)
.-..++.+|...|...+|+..|.++...-.. .+++-..-...+- . .--+..|-.|. ..-|..+
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge-----~~aL~~lv~~~~p-----~--~~sv~dG~t~s~e~t~lhYYlkv 989 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGE-----GNALRKLVYFLLP-----K--RFSVADGKTPSEELTALHYYLKV 989 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhcccc-----HHHHHHHHHHhcC-----C--CCchhcCCCCCchHHHHHHHHHH
Confidence 3456667788889999999998887653212 1111111111000 0 00001121111 2235566
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPN----AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD 322 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (831)
++.+-+.+-.+.+.++-..+++. +.++ ..+++++.+-....|.+-+|...+-.-... ..-......++-.++.
T Consensus 990 ~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 990 VRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHh
Confidence 77777777777777777666653 1222 224555666666667766665544322111 1112334445555566
Q ss_pred cCCHh------------HHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003315 323 QNKLE------------KAEC-VLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHE 370 (831)
Q Consensus 323 ~g~~~------------~A~~-~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 370 (831)
+|+++ +.+. +++..-+..+.-....|+.|-.-+...+++.+|-.+.-+
T Consensus 1067 cg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1067 CGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred ccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 65543 3444 344433333332334566666677788888887665433
No 441
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.71 E-value=1.4e+02 Score=20.13 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 785 GYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLER 819 (831)
Q Consensus 785 ~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~ 819 (831)
...+.|-.+++..++++|.+.|+.-+...+..+++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34677888999999999999999988887776654
No 442
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=35.27 E-value=7.6e+02 Score=28.57 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH---hcCChHHHHHH
Q 003315 186 FDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC---KKGSMQEAVEV 262 (831)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~ 262 (831)
.++=+.-++.-+..+. -+...++.|+..+.+.|+.++....-..|.+.- +.++..|...+.-.. ..+...++..+
T Consensus 95 ~~~ei~t~~ee~ai~~-y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINS-YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred chhHHHHHHHHhcccc-cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 3333333343333332 255567788888888888877666666665532 455666655554332 34667777788
Q ss_pred HHHHHhC
Q 003315 263 FLEMEKA 269 (831)
Q Consensus 263 ~~~m~~~ 269 (831)
|++.+..
T Consensus 173 ~ekal~d 179 (881)
T KOG0128|consen 173 FEKALGD 179 (881)
T ss_pred HHHHhcc
Confidence 8777653
No 443
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.18 E-value=1.6e+02 Score=27.29 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 272 TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 272 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
.|+..+|..++.++...|+.++|....+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555555555555555555555555554443
No 444
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.17 E-value=4.1e+02 Score=25.41 Aligned_cols=70 Identities=16% Similarity=0.334 Sum_probs=47.2
Q ss_pred cccCHHHHHHHHHHHHH-cCC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003315 718 CKEDVVDASVFWNEMKE-MGI-----------RPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCG 785 (831)
Q Consensus 718 ~~~~~~~a~~~~~~m~~-~~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~ 785 (831)
..|+...|+..++.-.. .|. .|.+.....++. .|..+++++|.+++.++.+.|+.|... .+++.+.
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~-~~~~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv 281 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ-ACLKRNIDEALKILAELWKLGYSPEDI-ITTLFRV 281 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH-HHHhccHHHHHHHHHHHHHcCCCHHHH-HHHHHHH
Confidence 46788888888776542 221 355666666665 455678999999999999888887543 3456666
Q ss_pred HHhc
Q 003315 786 YLAK 789 (831)
Q Consensus 786 ~~~~ 789 (831)
+-..
T Consensus 282 ~K~~ 285 (333)
T KOG0991|consen 282 VKNM 285 (333)
T ss_pred HHhc
Confidence 5554
No 445
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.62 E-value=3.1e+02 Score=27.68 Aligned_cols=90 Identities=13% Similarity=0.025 Sum_probs=41.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcC---CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 177 IKAYVSVGMFDEGIDILFQINRRG---FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
+.-|.+.++|..|+..|...++.. +..+...|+.-..+-.-.|++..|+.-....++.. +-....|..-..++...
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhHHHHHH
Confidence 344555555666666665544432 11223334444444444455555555555544432 12233344444444455
Q ss_pred CChHHHHHHHHHHH
Q 003315 254 GSMQEAVEVFLEME 267 (831)
Q Consensus 254 g~~~~A~~~~~~m~ 267 (831)
.++..|....++..
T Consensus 167 e~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHhhhh
Confidence 55555555554443
No 446
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.48 E-value=2.6e+02 Score=25.57 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHhcCCCCChh-------hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003315 221 VDMALAVYQHLKRLGLSLNEY-------TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGL 285 (831)
Q Consensus 221 ~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 285 (831)
.+.|+.+|+.+.+.-..|+.. .-...+..|.+.|.+++|.+++++... .|+.......+...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~I 153 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHH
Confidence 356777777766532122110 112334467788888888888888775 34544444333333
No 447
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.48 E-value=74 Score=31.50 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=27.9
Q ss_pred CChh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 003315 238 LNEY-TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAY 278 (831)
Q Consensus 238 ~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 278 (831)
|+.. -|+..|....+.||+++|+.+++++++.|..--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3443 3557777788888888888888888887755433343
No 448
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=34.35 E-value=3.4e+02 Score=27.11 Aligned_cols=71 Identities=11% Similarity=0.244 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------cCChhHH
Q 003315 225 LAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM----------NGMLDLG 294 (831)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----------~~~~~~a 294 (831)
.++|+.+.+.++.|.-.++..+.-.+.+.=.+...+.+++.+... ..-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 466777777777777776666665666777777888888777642 2224445544442 5777777
Q ss_pred HHHHHH
Q 003315 295 YELLLK 300 (831)
Q Consensus 295 ~~~~~~ 300 (831)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 777665
No 449
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.12 E-value=1e+02 Score=30.58 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=19.4
Q ss_pred CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003315 739 PDVI-SYTVLIAKLCNTQNLEDGITVFNEISDRGLE 773 (831)
Q Consensus 739 p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 773 (831)
||.. .|+.-|..-.+.|++++|+++++++.+.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4443 3355555556666666666666666555544
No 450
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=33.91 E-value=4.3e+02 Score=25.31 Aligned_cols=29 Identities=21% Similarity=0.175 Sum_probs=21.0
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 003315 453 YTTMICGYCLQGKLGDALDLFKEMKEMGH 481 (831)
Q Consensus 453 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 481 (831)
+..++-.+...|+++.|+++.+-+++.|.
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCC
Confidence 33444456678888888888888888774
No 451
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=33.79 E-value=3.8e+02 Score=24.67 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHH
Q 003315 657 VTYTMMIHGYCKINCLREARDVFND 681 (831)
Q Consensus 657 ~~~~~l~~~~~~~g~~~~A~~~~~~ 681 (831)
..-|.-...+.+.|+.+.|+.++++
T Consensus 182 qivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 182 QIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3455666667777777777777763
No 452
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.77 E-value=6e+02 Score=26.60 Aligned_cols=52 Identities=19% Similarity=0.119 Sum_probs=26.6
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCChhh----HHHHHHHHH--hcCChHHHHHHHHH
Q 003315 214 QLVECGKVDMALAVYQHLKRLGLSLNEYT----YVIVIKALC--KKGSMQEAVEVFLE 265 (831)
Q Consensus 214 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~--~~g~~~~A~~~~~~ 265 (831)
.+.+.+++..|.++|+++.....++.... |..+..+|. ..-++++|.+.+++
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 44556666666666666665433333322 222333332 24456666666664
No 453
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=32.70 E-value=4.9e+02 Score=25.59 Aligned_cols=25 Identities=8% Similarity=-0.003 Sum_probs=16.1
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHH
Q 003315 309 SAFAYTVVIRWFCDQNKLEKAECVL 333 (831)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~ 333 (831)
++..+..++..|.+.|++.+|+.-|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5667777777777777777776554
No 454
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.36 E-value=2.5e+02 Score=22.01 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=16.6
Q ss_pred cCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhH
Q 003315 183 VGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDM 223 (831)
Q Consensus 183 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 223 (831)
.|+.+.|.+++..+. .|+. .|..++.++...|.-+.
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 49 HGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHEL 84 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhh
Confidence 345555555555544 3321 34444555555444433
No 455
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.17 E-value=4.6e+02 Score=25.09 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=49.8
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHc------------CCCCCcchHHHHHHHHHhcCCHHH
Q 003315 436 ILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEM------------GHKPDIITYNVLAGAFAQYGAVQK 503 (831)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~ 503 (831)
++.+-....+++.+..-..+++ +..+|+..+|+..++.-... --.|.+.....++..|. .+++++
T Consensus 180 Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~ 256 (333)
T KOG0991|consen 180 RLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDE 256 (333)
T ss_pred HHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHH
Confidence 3333333344444444444444 55677887777777654321 11355555666666654 467888
Q ss_pred HHHHHHHHHHCCCCCCHH
Q 003315 504 AFDLLNYMKRHGLEPNFV 521 (831)
Q Consensus 504 a~~~~~~~~~~~~~~~~~ 521 (831)
|.+++.++-+.|+.|...
T Consensus 257 A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 257 ALKILAELWKLGYSPEDI 274 (333)
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 888888888888777654
No 456
>PHA02875 ankyrin repeat protein; Provisional
Probab=31.66 E-value=6.5e+02 Score=26.71 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=19.1
Q ss_pred HHHHHHHcCCCCCcch---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003315 472 LFKEMKEMGHKPDIIT---YNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPN 519 (831)
Q Consensus 472 ~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 519 (831)
+.+.+.+.|..++... ....+......|+.+ +.+.+++.|..++
T Consensus 183 iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 183 ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 3444455555444322 123333334455543 3344444555554
No 457
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.51 E-value=6.3e+02 Score=26.47 Aligned_cols=177 Identities=11% Similarity=0.077 Sum_probs=90.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHcCCChh-----------hHHHHHHHHHHhcCCC
Q 003315 86 EVVEKLYSLRKEPKIALSFFEQLK----RSGFSHNLCTYAAIVRILCCCGWQK-----------KLESMLLELVRKKTDA 150 (831)
Q Consensus 86 ~~~~~l~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----------~a~~~~~~~~~~~~~~ 150 (831)
.++..++-.+..|.+....++-+. ..++ |...|..+...--..|... +...+=..|++.....
T Consensus 48 ~i~RllfIA~~cp~Lr~~Al~~Ai~~vk~~t~--nv~ly~~l~~~~k~~~~L~~~~~~~~~~~~e~~~~D~~WvE~~~~~ 125 (466)
T KOG0686|consen 48 RILRLLFIARHCPDLRVEALRMAIDEVKEDTY--NVDLYQELFNASKIQGELGRAPFKNPQLGFEGYLLDEKWVETNNKK 125 (466)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHhcCc--chhHHHHHHHHHHhcchhhcCCCCCccccccccccchHHHHHhhHH
Confidence 445556666778877777766554 2233 5666655554211122221 1111122344432211
Q ss_pred chhH-HHHHHHHhcC--CC--cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCcChhhHHHHHHHHHHcCChhH
Q 003315 151 NFEA-TDLIEALCGE--GS--TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRG--FVWSICSCNYFMNQLVECGKVDM 223 (831)
Q Consensus 151 ~~~~-~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 223 (831)
...- ..+-..+... +. ....+++..++.-|...|+++.|+..|.+++..= ...-+..|..++.+-+-.|+|..
T Consensus 126 a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~h 205 (466)
T KOG0686|consen 126 AVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGH 205 (466)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhh
Confidence 1111 1111222211 11 2235688899999999999999999999865431 12233445556666667787777
Q ss_pred HHHHHHHHHhc---------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 224 ALAVYQHLKRL---------GLSLNEYTYVIVIKALCKKGSMQEAVEVFLEM 266 (831)
Q Consensus 224 A~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 266 (831)
...+-.+..+. .+++....+..+... ..+++..|.+.|-..
T Consensus 206 v~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L--~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 206 VLSYISKAESTPDANENLAQEVPAKLKCAAGLANL--LLKKYKSAAKYFLLA 255 (466)
T ss_pred hhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHH--HHHHHHHHHHHHHhC
Confidence 66666555442 122223333333333 334666666665443
No 458
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.61 E-value=9.3e+02 Score=28.17 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=25.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003315 317 IRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHE 370 (831)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 370 (831)
-..+...|+.+.+..+-..+.. |..++.-+++++.+++|++++..
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455565555544443332 55566667777777777776654
No 459
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=30.07 E-value=3.3e+02 Score=22.82 Aligned_cols=62 Identities=13% Similarity=0.018 Sum_probs=35.7
Q ss_pred HcCCChhhHHHHHHHHHHhcCC-CchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003315 128 CCCGWQKKLESMLLELVRKKTD-ANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQIN 197 (831)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 197 (831)
...|.+++|...+++.++.... +..++.+ ..-++...+..|..++...|+|++++.--+..+
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFD--------h~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFD--------HDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS-----------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcc--------cccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3456777777777776654321 1111111 012345567788889999999998887666544
No 460
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=30.00 E-value=1.4e+02 Score=18.60 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 003315 779 YTALLCGYLAKGDLDRAIALV 799 (831)
Q Consensus 779 ~~~l~~~~~~~g~~~~A~~~~ 799 (831)
+..+...+..+|++++|++++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~ 24 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFF 24 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 344555566666666666663
No 461
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=29.95 E-value=5.5e+02 Score=25.27 Aligned_cols=82 Identities=22% Similarity=0.256 Sum_probs=41.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH-HHH
Q 003315 238 LNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAY-TVV 316 (831)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 316 (831)
.++.....+...|.+.|++.+|..-|-. |-.|+...+..++......|...+ ...| ...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~----~~~~~~~~~~~ll~~~~~~~~~~e----------------~dlfi~Ra 147 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL----GTDPSAFAYVMLLEEWSTKGYPSE----------------ADLFIARA 147 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT----S-HHHHHHHHHHHHHHHHHTSS------------------HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh----cCChhHHHHHHHHHHHHHhcCCcc----------------hhHHHHHH
Confidence 3566777778888888888777766532 212333333223333333333222 2222 222
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC
Q 003315 317 IRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
+-.|.-.++...|...++...+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 33355567778887777666544
No 462
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.91 E-value=2.8e+02 Score=29.23 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=26.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH--CC-----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003315 627 LIGALCQAEEMEQAQLVFNVLVD--KG-----LTPHLVTYTMMIHGYCKINCLREARDVFNDM 682 (831)
Q Consensus 627 l~~~~~~~g~~~~A~~~~~~~~~--~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 682 (831)
|+++.+-.|++..|.++++.+.- .+ ..-.+.++..++-+|...+++.+|++.|...
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555443321 00 1112334445555555555555555555544
No 463
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.48 E-value=3.2e+02 Score=22.45 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=12.3
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHH
Q 003315 453 YTTMICGYCLQGKLGDALDLFKEMKE 478 (831)
Q Consensus 453 ~~~li~~~~~~g~~~~A~~~~~~~~~ 478 (831)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444444444444444444444433
No 464
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.36 E-value=4.8e+02 Score=27.56 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 003315 488 YNVLAGAFAQYGAVQKAFDLLNYM 511 (831)
Q Consensus 488 ~~~l~~~~~~~g~~~~a~~~~~~~ 511 (831)
...+++.++-.||+..|+++++.+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc
Confidence 344555666667777777766654
No 465
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.77 E-value=5.8e+02 Score=25.23 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 311 FAYTVVIRWFCDQNKLEKAECVLLHMEK----QGVVPDVYAYSA-LISGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~-li~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
.++..++..|++.++.+.+.+..++..+ .|.+.|+..... |.-.|....-.++-++..+.|.++|
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 4455555666666666555555444433 233333322211 2222333333455555555555554
No 466
>PRK09857 putative transposase; Provisional
Probab=28.39 E-value=4.3e+02 Score=26.53 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=26.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003315 211 FMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTP 273 (831)
Q Consensus 211 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 273 (831)
+++-....++.++..++++.+.+. .+......-+++.-+.+.|.-++++++..+|+..|+.+
T Consensus 212 ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 212 LFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 333333444444444555444433 12222222234444444454455555555555555443
No 467
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.11 E-value=3.8e+02 Score=22.80 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=20.2
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003315 760 GITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAIALVD 800 (831)
Q Consensus 760 A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~ 800 (831)
..++|..|...|+--. +..|......+-..|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455555555544333 2233444444555555555555553
No 468
>PRK12798 chemotaxis protein; Reviewed
Probab=27.51 E-value=7.5e+02 Score=26.11 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
..|..+.+.-.-.|+.+-|.-.-++....
T Consensus 258 ~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 258 ELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 35666666666666666666555555543
No 469
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.39 E-value=9.6e+02 Score=27.27 Aligned_cols=87 Identities=11% Similarity=0.189 Sum_probs=52.8
Q ss_pred HHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHh
Q 003315 723 VDASVFWNEM-KEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGL-------------EPDTVTYTALLCGYLA 788 (831)
Q Consensus 723 ~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-------------~pd~~~~~~l~~~~~~ 788 (831)
++..+.+... .+.|+..+...+..++. ...|++.+++.+++++...|- .++......++.++.
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~- 262 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA- 262 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-
Confidence 3444444443 34566666666665554 345778888887776554321 122333344555544
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH
Q 003315 789 KGDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 789 ~g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
.|+...++++++++...|.+|...
T Consensus 263 ~~d~~~al~~l~~l~~~G~~~~~i 286 (618)
T PRK14951 263 QGDGRTVVETADELRLNGLSAAST 286 (618)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 478889999999998888777654
No 470
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.23 E-value=4.7e+02 Score=26.27 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=57.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 003315 421 IVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGA 500 (831)
Q Consensus 421 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 500 (831)
++....+.++..+..+.++.+. ....-...+..+...|++..|++++.+..+.- . ....|..+=..- .+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~---~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLS---SQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHh---HH
Confidence 4445555556666666666554 23334456677778899999998888776531 0 111121111111 12
Q ss_pred HHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 003315 501 VQKAFDLLNYMKRH-----GLEPNFVTHNMIIEGLCMGGRVEEAEA 541 (831)
Q Consensus 501 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~ 541 (831)
.++.....+.+++. -...|+..|..+..+|.-.|+...+.+
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 23333333332221 114566677778878777776655543
No 471
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=27.18 E-value=7.9e+02 Score=27.04 Aligned_cols=94 Identities=16% Similarity=0.289 Sum_probs=64.8
Q ss_pred ccCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCCH----------HHHHHHHH
Q 003315 719 KEDVVDASVFWNEMK-EMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGL---EPDT----------VTYTALLC 784 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~pd~----------~~~~~l~~ 784 (831)
+-+.++-...++.+. +.++.-+...+..+. ....|-..+|+.+++++...|- .++. .....++.
T Consensus 177 ri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia--~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~~~~~~~~~~~~ 254 (515)
T COG2812 177 RLDLEEIAKHLAAILDKEGINIEEDALSLIA--RAAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGLTDIEKLLSLLE 254 (515)
T ss_pred CCCHHHHHHHHHHHHHhcCCccCHHHHHHHH--HHcCCChhhHHHHHHHHHHccCCcccHHHHHHHhCCCCHHHHHHHHH
Confidence 344566666666665 477888888777765 4567888999999999987642 1111 11122232
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003315 785 GYLAKGDLDRAIALVDEMSVKGIQGDDYTKS 815 (831)
Q Consensus 785 ~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~ 815 (831)
....||..+++..++++.+.|..|......
T Consensus 255 -~i~~~d~~~~~~~~~~l~~~G~~~~~~l~d 284 (515)
T COG2812 255 -AILKGDAKEALRLINELIEEGKDPEAFLED 284 (515)
T ss_pred -HHHccCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 345679999999999999999988876554
No 472
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.06 E-value=1.1e+03 Score=27.73 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=30.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAF--AYSTCIEGLCMNGMLDLGYELLLKW 301 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (831)
-+.|...|++++|++.-+. .|+.. .+..-...|...+++..|-++|.++
T Consensus 365 Wk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 3457778888888776533 34433 2333345567777888888777776
No 473
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.79 E-value=5.3e+02 Score=28.76 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=48.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNA------FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
+..++..+.+.|..-... +..|. ..+..+.-+|.+..+.|.|.++++++.+.+ +.++.+-..+.......|.
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhcc
Confidence 456677777777654432 12221 133444455666666677777777766654 3445555555556666666
Q ss_pred HhHHHHHHHHHHH
Q 003315 326 LEKAECVLLHMEK 338 (831)
Q Consensus 326 ~~~A~~~~~~~~~ 338 (831)
-++|+.+......
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 6666666655543
No 474
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.61 E-value=6.3e+02 Score=24.94 Aligned_cols=55 Identities=18% Similarity=0.055 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCChHHHHHHH
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYS-------ALISGYCKFGKINKALLLH 368 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-------~li~~~~~~~~~~~A~~~~ 368 (831)
..+++-..+.+++++|...+.++...|+..|..+.+ .+...|...|++...-++.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 346666777888888888888888888776766544 2445555555555444433
No 475
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=26.60 E-value=5.8e+02 Score=24.48 Aligned_cols=21 Identities=19% Similarity=-0.040 Sum_probs=14.6
Q ss_pred hccCChhHHHHHHHHHHhCCC
Q 003315 93 SLRKEPKIALSFFEQLKRSGF 113 (831)
Q Consensus 93 ~~~~~~~~A~~~~~~~~~~~~ 113 (831)
---|+++.|+++...+.+.|.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCC
Confidence 355788888888877775543
No 476
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.26 E-value=3.6e+02 Score=29.97 Aligned_cols=75 Identities=11% Similarity=0.101 Sum_probs=51.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHHHCCCCCChhhHHHH
Q 003315 245 IVIKALCKKGSMQEAVEVFLEMEKAG--VTPNAFAYSTCIEGLCMNGMLD------LGYELLLKWEEADIPLSAFAYTVV 316 (831)
Q Consensus 245 ~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 316 (831)
+|+.+|...|++.++.++++.....+ -+.-...+|..|+...+.|.++ .+.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999887652 2223446788888888888764 3444454444 33466777777
Q ss_pred HHHHHh
Q 003315 317 IRWFCD 322 (831)
Q Consensus 317 ~~~~~~ 322 (831)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665544
No 477
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.16 E-value=3.3e+02 Score=30.32 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHhHHHH
Q 003315 590 NKLITNLLILRDNNNALKLFKTMITLNA--EPSKSMYDKLIGALCQAEEME------QAQLVFNVLVDKGLTPHLVTYTM 661 (831)
Q Consensus 590 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p~~~~~~~ 661 (831)
.+++.+|...|+...+.++++..+..+- +.=...+|..++...+.|.++ .|.+.+++.. +.-|..+|..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 3778888888888888888887775431 122345677777777777653 3444444433 3446667776
Q ss_pred HHHHHHH
Q 003315 662 MIHGYCK 668 (831)
Q Consensus 662 l~~~~~~ 668 (831)
|+.+-..
T Consensus 109 l~~~sln 115 (1117)
T COG5108 109 LCQASLN 115 (1117)
T ss_pred HHHhhcC
Confidence 6665443
No 478
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=26.12 E-value=1.6e+02 Score=17.96 Aligned_cols=13 Identities=0% Similarity=0.245 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHH
Q 003315 757 LEDGITVFNEISD 769 (831)
Q Consensus 757 ~~~A~~~~~~~~~ 769 (831)
++.|..+|++.+.
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445555444
No 479
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.99 E-value=9.3e+02 Score=26.64 Aligned_cols=100 Identities=15% Similarity=0.034 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHH-------HHcCCCcCh-------------hhHHH---HHHHHHHcCChhH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQI-------NRRGFVWSI-------------CSCNY---FMNQLVECGKVDM 223 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~-------------~~~~~---l~~~~~~~~~~~~ 223 (831)
+........++.++..+|+.+-|..+.++. ....+.|.. .-|.+ -+..+.+.|-+.-
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 444456667778888888877666655553 332222211 11111 1233444555666
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHH
Q 003315 224 ALAVYQHLKRLGLSLNEYTYVIVIKALC-KKGSMQEAVEVFLEM 266 (831)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m 266 (831)
|.++.+-+.+.....|+.....+|+.|+ +..+|+--++++++.
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6666555555443334555555555543 445555555555544
No 480
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.89 E-value=4.1e+02 Score=22.55 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=20.7
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHH
Q 003315 294 GYELLLKWEEADIPLS-AFAYTVVIRWFCDQNKLEKAECVLL 334 (831)
Q Consensus 294 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 334 (831)
..++|..|...++... ...|...+..+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4445555555543332 2334455555555566666655554
No 481
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=25.72 E-value=5.9e+02 Score=26.06 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 221 VDMALAVYQHLKRLGLSLNE----YTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLC 286 (831)
Q Consensus 221 ~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (831)
.++++.+++.+++. -|+. .-|..+++.....|.++..+.+|++++..|..|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45667777776653 2443 3577888888888888999999999988888877666666665544
No 482
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=25.62 E-value=4.5e+02 Score=27.89 Aligned_cols=27 Identities=4% Similarity=-0.002 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 779 YTALLCGYLAKGDLDRAIALVDEMSVK 805 (831)
Q Consensus 779 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 805 (831)
...-+..+.+.+++..|-.+-+++++.
T Consensus 303 Lr~AM~~~~K~KNf~tAa~FArRLLel 329 (422)
T PF06957_consen 303 LRSAMSQAFKLKNFITAASFARRLLEL 329 (422)
T ss_dssp HHHHHHHCCCTTBHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence 344455566777777777777777763
No 483
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.61 E-value=4.5e+02 Score=30.48 Aligned_cols=129 Identities=16% Similarity=0.085 Sum_probs=72.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 003315 425 LCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKA 504 (831)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 504 (831)
+...|+++.|++.-+.+. +..+|..|......+|+.+-|...|++.+.. ..+-..|.-.|+.++-
T Consensus 653 aLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHH
Confidence 346678888877665543 5567888888888888888888888776542 2222234456777766
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHH-HHhcCCHHHHHHHHHHHHhC
Q 003315 505 FDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMING-YCKTGHTKEAFQLFMRLSNQ 580 (831)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~ 580 (831)
.++.+.+... .|..... ....-.|++++-.++++..-..+ +.+. -..+|.-++|.++.++...+
T Consensus 718 ~Km~~iae~r---~D~~~~~---qnalYl~dv~ervkIl~n~g~~~------laylta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 718 SKMMKIAEIR---NDATGQF---QNALYLGDVKERVKILENGGQLP------LAYLTAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHHhh---hhhHHHH---HHHHHhccHHHHHHHHHhcCccc------HHHHHHhhcCcHHHHHHHHHhhccc
Confidence 6655555432 1222111 11112566666666665432211 1111 12356667777777776553
No 484
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=25.21 E-value=6.6e+02 Score=25.73 Aligned_cols=63 Identities=11% Similarity=-0.020 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 003315 257 QEAVEVFLEMEKAGVTPNA----FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFC 321 (831)
Q Consensus 257 ~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (831)
++.+.++.++.+. .|+. ..|..+++.....|.++..+.+|++++..|-.|-......++..+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4566666666654 4454 2566666777777777777777777777766665555555555543
No 485
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=24.83 E-value=3.9e+02 Score=21.92 Aligned_cols=88 Identities=13% Similarity=0.067 Sum_probs=50.0
Q ss_pred cCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003315 183 VGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEV 262 (831)
Q Consensus 183 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (831)
....++|..+.+.+...+. -...+-...+..+.++|+|++| +..-.. ...||...|.+|. -.+.|-.+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 4456788888887776653 2333334444567788888888 222222 2347777776655 3477888888888
Q ss_pred HHHHHhCCCCCCHHHH
Q 003315 263 FLEMEKAGVTPNAFAY 278 (831)
Q Consensus 263 ~~~m~~~~~~p~~~~~ 278 (831)
+.++...| .|....|
T Consensus 92 l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 92 LTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHCT-S-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 88776655 4444333
No 486
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=24.79 E-value=4.8e+02 Score=22.88 Aligned_cols=77 Identities=12% Similarity=0.249 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------CHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHH
Q 003315 659 YTMMIHGYCKINCLREARDVFNDMKQRGITP-------DVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNE 731 (831)
Q Consensus 659 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 731 (831)
.|.++.-...-++..-.+.+++.+.. +.+ +..+|.+++.+.+.. ...--.+..+|.-
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~--l~~~~~~~~~~~ssf~~if~SlsnS--------------sSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHF--LNTDNIIGWLDNSSFHIIFKSLSNS--------------SSAKLTSLTLFNF 105 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHccC--------------hHHHHHHHHHHHH
Confidence 46677776777778887777777742 222 233455666655431 1112334555555
Q ss_pred HHHcCCCCCHHHHHHHHHHH
Q 003315 732 MKEMGIRPDVISYTVLIAKL 751 (831)
Q Consensus 732 m~~~~~~p~~~~~~~l~~~~ 751 (831)
|++.+.++++.-|..++.++
T Consensus 106 Lk~~~~~~t~~dy~~li~~~ 125 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAA 125 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHH
Confidence 55555555555555555543
No 487
>PRK13342 recombination factor protein RarA; Reviewed
Probab=24.72 E-value=8.7e+02 Score=25.89 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=15.7
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003315 720 EDVVDASVFWNEMKEMGIRPDVISYTVL 747 (831)
Q Consensus 720 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l 747 (831)
.+.+.|+.++..|.+.|..|....-..+
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~ 271 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLV 271 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4566666666666666655544333333
No 488
>PRK09857 putative transposase; Provisional
Probab=24.67 E-value=7e+02 Score=25.06 Aligned_cols=67 Identities=9% Similarity=0.050 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003315 624 YDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDV 691 (831)
Q Consensus 624 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 691 (831)
+..++......++.++-.++++.+.+. ....-....+++.-+.+.|.-++++++..+|+..|+.++.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 445555555667777777777777665 2223344556667777778778889999999998887663
No 489
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=24.55 E-value=1.9e+02 Score=27.37 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=37.9
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003315 180 YVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 180 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
....++.+.|.++|.+++..-+. +...|-.+...--+.|+++.|.+.|++.++.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 34567777777777777776533 55566666666677777777777777777653
No 490
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=24.24 E-value=1.2e+03 Score=27.24 Aligned_cols=126 Identities=15% Similarity=0.121 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHh--------CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC
Q 003315 566 HTKEAFQLFMRLSN--------QGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAE--PSKSMYDKLIGALCQAE 635 (831)
Q Consensus 566 ~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g 635 (831)
..++...++++... .++..+......++... .|+..+++.+++.+...... .+... =
T Consensus 169 s~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------I 235 (725)
T PRK13341 169 SDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------I 235 (725)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------c
Confidence 34566666666554 23445556666555533 68888888888776532100 00000 0
Q ss_pred CHHHHHHHHHHHH---HCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccc
Q 003315 636 EMEQAQLVFNVLV---DKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKIN 705 (831)
Q Consensus 636 ~~~~A~~~~~~~~---~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 705 (831)
..+.+.+.+.... ...-.+.......++.. .+.++++.|+..+.+|++.|..|..+.-..++.+....|
T Consensus 236 t~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 236 TLAIAEESIQQRAVLYDKEGDAHFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred cHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 1122333332211 11111233333333333 355889999999999999999988777776666654444
No 491
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.18 E-value=1e+03 Score=26.38 Aligned_cols=108 Identities=11% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---
Q 003315 696 VLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMK-EMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRG--- 771 (831)
Q Consensus 696 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--- 771 (831)
.+.+-|..... ..-..++....+..+. +.|+..+......++... .|++..|+.+++++...|
T Consensus 165 tI~SRc~~~~f-----------~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~ 231 (509)
T PRK14958 165 TVLSRCLQFHL-----------AQLPPLQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGK 231 (509)
T ss_pred HHHHHhhhhhc-----------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCC
Q ss_pred ----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 772 ----------LEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSL 817 (831)
Q Consensus 772 ----------~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l 817 (831)
-.++......++.++.. |+.+.+.+++++|...|.+|.......+
T Consensus 232 It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~il~~l~ 286 (509)
T PRK14958 232 VLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSNALADLL 286 (509)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHHH
No 492
>PF13934 ELYS: Nuclear pore complex assembly
Probab=24.09 E-value=6.4e+02 Score=24.13 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=38.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAV 260 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (831)
...+++++|++.+..- ... ..--..++.++...|+.+.|+.++....-. ..+......++.. ..++.+.+|.
T Consensus 89 LD~~~~~~A~~~L~~p---s~~--~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EAf 160 (226)
T PF13934_consen 89 LDHGDFEEALELLSHP---SLI--PWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEAF 160 (226)
T ss_pred hChHhHHHHHHHhCCC---CCC--cccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHHH
Confidence 4456666666655221 111 111234666666677777777776653311 1122222222323 4556666666
Q ss_pred HHHHHHH
Q 003315 261 EVFLEME 267 (831)
Q Consensus 261 ~~~~~m~ 267 (831)
..-+...
T Consensus 161 ~~~R~~~ 167 (226)
T PF13934_consen 161 SFQRSYP 167 (226)
T ss_pred HHHHhCc
Confidence 6655443
No 493
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=24.07 E-value=3.1e+02 Score=29.37 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=32.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHH--H------------HHHHhcCCHHHHHHHHHHHHhCC
Q 003315 752 CNTQNLEDGITVFNEISDRGLEPDTVTYTAL--L------------CGYLAKGDLDRAIALVDEMSVKG 806 (831)
Q Consensus 752 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l--~------------~~~~~~g~~~~A~~~~~~~~~~g 806 (831)
|-+|++++-.+.=+.+.+. +++|...++-+ . .+|...|.-.++-..|++|.++|
T Consensus 356 aLSGdpeDi~~TD~~~~e~-~~~~~~~~~WI~~A~e~~~fqGlpARI~wlg~~eR~~~~l~fNe~V~~G 423 (545)
T TIGR01228 356 ALSGDPADIYRTDAAVKEL-FPEDAHLHRWIDMAQERVSFQGLPARICWLGYGERAKLGLAINEMVRSG 423 (545)
T ss_pred ecCCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhcCcccCCchhhhhcCccHHHHHHHHHHHHHHcC
Confidence 3457777766665555554 55554432222 1 13555666677777899999887
No 494
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=23.96 E-value=8.8e+02 Score=26.73 Aligned_cols=87 Identities=7% Similarity=0.205 Sum_probs=49.3
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------C----------CCCHHHHHHHHHH
Q 003315 723 VDASVFWNEMK-EMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRG------L----------EPDTVTYTALLCG 785 (831)
Q Consensus 723 ~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------~----------~pd~~~~~~l~~~ 785 (831)
++...+++... ..|+..+......++. ...|++..|+..++++...+ + .++......|+.+
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~a 267 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEY 267 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHH
Confidence 33344444333 3455555555554443 23467777777777664321 1 1223333445544
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003315 786 YLAKGDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 786 ~~~~g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
.. .|+.++|+.+++++...|.+|...
T Consensus 268 i~-~~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 268 II-HRETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred HH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 44 478888888888888888877754
No 495
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.96 E-value=6.1e+02 Score=25.42 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=31.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 316 VIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
++....+.+++.+..+.++.+. ....-...+......|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4445555555555555555554 233344456666778888888888777654
No 496
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.90 E-value=8.1e+02 Score=25.26 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=13.4
Q ss_pred HHhcCCHhHHHHHHHHHHH
Q 003315 320 FCDQNKLEKAECVLLHMEK 338 (831)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~ 338 (831)
|...+++++|.-+++....
T Consensus 193 ciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVT 211 (422)
T ss_pred eeccccHHHHHHHHHHHHh
Confidence 4456678888877777765
No 497
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=23.75 E-value=1.4e+03 Score=27.77 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=20.1
Q ss_pred hHHHHHHHHhcC--CHHHHHHHHHHHHhC
Q 003315 554 YSAMINGYCKTG--HTKEAFQLFMRLSNQ 580 (831)
Q Consensus 554 ~~~l~~~~~~~g--~~~~A~~~~~~~~~~ 580 (831)
...++.+|.+.+ ++++|+.++.++.+.
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 556777777777 778888888777765
No 498
>PRK12798 chemotaxis protein; Reviewed
Probab=23.70 E-value=8.9e+02 Score=25.62 Aligned_cols=153 Identities=11% Similarity=-0.006 Sum_probs=97.4
Q ss_pred HcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCh
Q 003315 217 ECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC-KKGSMQEAVEVFLEMEKAGVTPNA----FAYSTCIEGLCMNGML 291 (831)
Q Consensus 217 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~ 291 (831)
-.|+.++|.+.+..+.....++....|..|+.+-. ...+..+|++.|+...-. -|.. .....-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 46889999999988876666677777887776654 457889999999987643 3443 2344445567788999
Q ss_pred hHHHHHHHHHHHCC-C-CCChhhHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003315 292 DLGYELLLKWEEAD-I-PLSAFAYTVVIRWFCDQNK---LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALL 366 (831)
Q Consensus 292 ~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 366 (831)
+++..+-.++..+- . +.-...+..+...+.+.++ .+.-..++..|.. .--...|..+...-.-.|+.+-|.-
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~ 278 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARF 278 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 98887777776651 1 1122233334444444432 2333333333321 2234678888888888899888877
Q ss_pred HHHHHHhC
Q 003315 367 LHHEMTSK 374 (831)
Q Consensus 367 ~~~~~~~~ 374 (831)
.-++....
T Consensus 279 As~~A~~L 286 (421)
T PRK12798 279 ASERALKL 286 (421)
T ss_pred HHHHHHHh
Confidence 77776654
No 499
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.54 E-value=7.7e+02 Score=27.57 Aligned_cols=92 Identities=10% Similarity=0.106 Sum_probs=68.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCC---cCh--hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 177 IKAYVSVGMFDEGIDILFQINRRGFV---WSI--CSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
+....+..+|..+++.|..-++.-+. .+. .....+.-.|.+..+.|.|.+++++..+.+ +.++.+--.+..+..
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFL 439 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHH
Confidence 34456788999999999886654222 112 234556667788899999999999988864 456777777788888
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003315 252 KKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~ 269 (831)
..|.-++|+.........
T Consensus 440 ~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HhcchHHHHHHHHHHHhh
Confidence 999999999999887754
No 500
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=23.45 E-value=1.9e+02 Score=18.42 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINR 198 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (831)
+|..|+......++|++|+.=|.++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566777777888888888887777654
Done!