Query 003315
Match_columns 831
No_of_seqs 766 out of 4038
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 21:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.5E-38 1.9E-42 355.7 43.0 512 180-812 63-584 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.2E-37 7.5E-42 350.7 41.7 499 168-700 82-593 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-26 4.4E-31 246.6 48.6 369 175-553 4-372 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-26 1.1E-30 243.4 47.5 383 123-534 5-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 6.8E-28 2.3E-32 259.4 24.8 205 605-824 9-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 5.9E-27 2E-31 252.1 24.4 206 569-789 8-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 4.7E-23 1.6E-27 228.4 43.6 446 169-650 5-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.3E-23 1.1E-27 229.6 38.7 451 205-692 6-483 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.3E-21 7.9E-26 210.7 39.9 327 167-527 23-370 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 3.8E-21 1.3E-25 208.9 40.8 304 116-444 25-358 (450)
11 3fp2_A TPR repeat-containing p 99.9 1.2E-21 4E-26 218.4 37.1 439 169-650 24-491 (537)
12 3fp2_A TPR repeat-containing p 99.9 3.4E-21 1.1E-25 214.7 36.8 429 116-616 24-492 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 2.6E-16 8.8E-21 178.4 63.8 541 175-800 844-1440(1630)
14 3ieg_A DNAJ homolog subfamily 99.9 1.8E-18 6.3E-23 181.3 39.1 320 117-494 3-349 (359)
15 3ieg_A DNAJ homolog subfamily 99.9 2.1E-18 7.3E-23 180.8 39.3 331 169-532 2-352 (359)
16 1xi4_A Clathrin heavy chain; a 99.9 1.2E-15 4.2E-20 172.9 62.8 408 169-635 984-1415(1630)
17 2xm6_A Protein corresponding t 99.8 3E-16 1E-20 171.6 49.7 352 116-515 38-433 (490)
18 2xm6_A Protein corresponding t 99.8 5.5E-16 1.9E-20 169.5 49.3 369 223-652 25-434 (490)
19 3hym_B Cell division cycle pro 99.8 2.1E-17 7.1E-22 171.0 33.8 285 204-530 21-314 (330)
20 2ooe_A Cleavage stimulation fa 99.8 2.5E-16 8.7E-21 174.1 44.4 428 228-685 2-492 (530)
21 3hym_B Cell division cycle pro 99.8 2E-17 6.7E-22 171.2 33.2 293 169-495 21-314 (330)
22 2ooe_A Cleavage stimulation fa 99.8 3.8E-16 1.3E-20 172.7 45.0 215 433-650 256-492 (530)
23 1fch_A Peroxisomal targeting s 99.8 5.6E-17 1.9E-21 170.7 27.0 259 179-442 34-312 (368)
24 1fch_A Peroxisomal targeting s 99.8 3.6E-17 1.2E-21 172.2 25.4 257 94-373 37-313 (368)
25 4g1t_A Interferon-induced prot 99.8 6.3E-16 2.1E-20 168.8 35.3 329 169-553 50-405 (472)
26 4eqf_A PEX5-related protein; a 99.8 9.4E-17 3.2E-21 168.7 24.9 233 169-408 64-309 (365)
27 4eqf_A PEX5-related protein; a 99.8 9.6E-17 3.3E-21 168.6 24.6 236 116-374 64-310 (365)
28 3cv0_A Peroxisome targeting si 99.7 2E-16 7E-21 163.3 25.9 233 169-407 20-267 (327)
29 1b89_A Protein (clathrin heavy 99.7 4.4E-16 1.5E-20 158.7 27.3 345 182-575 15-367 (449)
30 3cv0_A Peroxisome targeting si 99.7 4.2E-16 1.4E-20 160.9 27.1 264 83-370 22-311 (327)
31 1b89_A Protein (clathrin heavy 99.7 5.8E-16 2E-20 157.8 25.2 282 216-574 14-305 (449)
32 4g1t_A Interferon-induced prot 99.7 7E-15 2.4E-19 160.4 35.5 389 83-515 52-460 (472)
33 3mkr_A Coatomer subunit epsilo 99.7 3.6E-15 1.2E-19 149.7 25.6 248 95-374 12-264 (291)
34 3mkr_A Coatomer subunit epsilo 99.7 5.6E-15 1.9E-19 148.3 25.6 253 178-479 7-264 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-16 5.9E-21 174.4 12.3 115 657-786 128-246 (1134)
36 2pl2_A Hypothetical conserved 99.7 5.4E-15 1.9E-19 141.7 20.7 197 170-372 5-212 (217)
37 2pl2_A Hypothetical conserved 99.7 7.8E-15 2.7E-19 140.6 21.6 201 202-408 2-213 (217)
38 3e4b_A ALGK; tetratricopeptide 99.7 9.7E-15 3.3E-19 156.8 23.8 280 88-407 9-314 (452)
39 3spa_A Mtrpol, DNA-directed RN 99.6 4.4E-16 1.5E-20 171.2 11.3 123 687-824 123-249 (1134)
40 3e4b_A ALGK; tetratricopeptide 99.6 4.4E-14 1.5E-18 151.7 25.2 346 211-616 9-388 (452)
41 3uq3_A Heat shock protein STI1 99.6 6.3E-14 2.2E-18 138.8 24.4 226 169-408 4-235 (258)
42 2h6f_A Protein farnesyltransfe 99.6 1.8E-13 6.3E-18 141.9 27.6 233 117-374 97-348 (382)
43 2h6f_A Protein farnesyltransfe 99.6 2.3E-13 8E-18 141.1 28.3 218 169-393 96-322 (382)
44 3uq3_A Heat shock protein STI1 99.6 1.2E-13 4E-18 136.9 24.3 226 415-685 5-236 (258)
45 3u4t_A TPR repeat-containing p 99.6 2E-13 6.8E-18 136.5 24.4 199 170-374 3-208 (272)
46 4e6h_A MRNA 3'-END-processing 99.6 2.1E-11 7.1E-16 135.0 42.1 473 185-703 47-586 (679)
47 3u4t_A TPR repeat-containing p 99.6 3E-13 1E-17 135.2 24.2 237 117-375 3-251 (272)
48 2ho1_A Type 4 fimbrial biogene 99.6 6.8E-13 2.3E-17 130.8 26.4 202 170-375 37-239 (252)
49 2q7f_A YRRB protein; TPR, prot 99.6 1.6E-13 5.5E-18 134.5 20.9 205 166-375 19-223 (243)
50 1ouv_A Conserved hypothetical 99.6 5.4E-12 1.9E-16 126.0 32.3 224 169-410 5-252 (273)
51 2vq2_A PILW, putative fimbrial 99.6 1.3E-12 4.3E-17 126.2 26.9 204 168-374 6-211 (225)
52 2ho1_A Type 4 fimbrial biogene 99.6 1.4E-12 4.6E-17 128.7 27.5 202 117-340 37-239 (252)
53 1ouv_A Conserved hypothetical 99.6 5.1E-12 1.7E-16 126.2 31.8 224 116-375 5-252 (273)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.6E-13 5.6E-18 137.3 20.4 228 127-375 15-245 (275)
55 2q7f_A YRRB protein; TPR, prot 99.6 2.5E-13 8.4E-18 133.2 21.1 195 87-304 28-222 (243)
56 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.8E-13 6.1E-18 137.1 19.5 247 94-368 17-269 (275)
57 2vq2_A PILW, putative fimbrial 99.5 3.2E-12 1.1E-16 123.4 26.3 203 115-339 6-211 (225)
58 4a1s_A PINS, partner of inscut 99.5 3.8E-13 1.3E-17 143.7 17.8 274 87-374 53-372 (411)
59 3vtx_A MAMA; tetratricopeptide 99.5 5.2E-12 1.8E-16 117.5 22.2 167 169-339 4-170 (184)
60 2ond_A Cleavage stimulation fa 99.5 2.7E-11 9.3E-16 123.1 28.9 218 134-375 33-271 (308)
61 4e6h_A MRNA 3'-END-processing 99.5 1.3E-09 4.4E-14 120.7 43.3 441 98-583 48-573 (679)
62 3sf4_A G-protein-signaling mod 99.5 1E-12 3.5E-17 140.0 18.1 237 169-406 8-293 (406)
63 4a1s_A PINS, partner of inscut 99.5 1.9E-12 6.6E-17 138.1 20.2 280 169-479 47-372 (411)
64 3sf4_A G-protein-signaling mod 99.4 2.1E-12 7.2E-17 137.6 19.6 243 116-373 8-295 (406)
65 3ro2_A PINS homolog, G-protein 99.4 8.3E-12 2.8E-16 129.0 20.8 277 171-479 6-332 (338)
66 4abn_A Tetratricopeptide repea 99.4 3.8E-12 1.3E-16 137.6 18.7 196 169-370 101-317 (474)
67 3ro2_A PINS homolog, G-protein 99.4 7.3E-12 2.5E-16 129.4 20.2 274 87-374 10-332 (338)
68 3vtx_A MAMA; tetratricopeptide 99.4 3.4E-11 1.2E-15 111.9 22.4 168 116-305 4-171 (184)
69 2ond_A Cleavage stimulation fa 99.4 1.3E-10 4.4E-15 118.0 28.6 215 187-406 33-267 (308)
70 4abn_A Tetratricopeptide repea 99.4 1.1E-11 3.7E-16 134.0 20.9 215 97-336 83-318 (474)
71 3nf1_A KLC 1, kinesin light ch 99.4 5.3E-12 1.8E-16 128.9 15.1 176 82-268 27-223 (311)
72 3nf1_A KLC 1, kinesin light ch 99.3 2.3E-11 8E-16 124.0 18.3 244 165-409 22-307 (311)
73 3ulq_A Response regulator aspa 99.3 7.4E-11 2.5E-15 124.3 22.0 224 181-406 23-290 (383)
74 4gyw_A UDP-N-acetylglucosamine 99.3 5.5E-11 1.9E-15 133.4 21.5 168 167-338 6-173 (723)
75 3ulq_A Response regulator aspa 99.3 2E-10 7E-15 120.9 24.1 200 172-371 105-332 (383)
76 1hz4_A MALT regulatory protein 99.3 1E-09 3.5E-14 115.1 28.7 204 171-374 15-244 (373)
77 4i17_A Hypothetical protein; T 99.3 2.4E-10 8.1E-15 110.4 21.2 196 169-375 6-210 (228)
78 3as5_A MAMA; tetratricopeptide 99.3 2.2E-10 7.4E-15 106.4 20.1 167 169-339 7-173 (186)
79 4gyw_A UDP-N-acetylglucosamine 99.3 1.3E-10 4.6E-15 130.3 21.5 166 116-303 8-173 (723)
80 1hz4_A MALT regulatory protein 99.3 1.1E-09 3.7E-14 114.9 27.2 275 86-373 18-321 (373)
81 4i17_A Hypothetical protein; T 99.2 8.2E-10 2.8E-14 106.6 21.7 207 115-352 5-221 (228)
82 3q15_A PSP28, response regulat 99.2 1.1E-09 3.9E-14 114.9 24.1 130 554-684 144-289 (378)
83 3as5_A MAMA; tetratricopeptide 99.2 5.2E-10 1.8E-14 103.8 19.2 166 205-374 8-173 (186)
84 3edt_B KLC 2, kinesin light ch 99.2 3E-10 1E-14 113.8 16.3 234 129-374 13-281 (283)
85 3q15_A PSP28, response regulat 99.2 1.7E-09 5.8E-14 113.6 21.7 236 87-337 106-363 (378)
86 3edt_B KLC 2, kinesin light ch 99.1 1.5E-09 5.2E-14 108.6 17.1 235 94-339 13-281 (283)
87 1qqe_A Vesicular transport pro 99.1 2.5E-09 8.4E-14 107.5 17.6 172 622-812 78-274 (292)
88 3urz_A Uncharacterized protein 99.1 4.7E-09 1.6E-13 99.3 17.9 170 171-347 5-192 (208)
89 3qky_A Outer membrane assembly 99.1 5.1E-09 1.7E-13 103.4 18.8 103 116-234 14-126 (261)
90 3qky_A Outer membrane assembly 99.1 4.9E-09 1.7E-13 103.5 18.3 101 168-269 13-126 (261)
91 3urz_A Uncharacterized protein 99.1 6.9E-09 2.3E-13 98.2 18.5 142 171-318 55-198 (208)
92 3mv2_B Coatomer subunit epsilo 99.1 1.3E-07 4.4E-12 92.5 27.2 179 189-374 85-282 (310)
93 2pzi_A Probable serine/threoni 99.0 4E-09 1.4E-13 119.3 18.5 174 128-325 402-583 (681)
94 3dra_A Protein farnesyltransfe 99.0 2.2E-07 7.4E-12 92.1 28.5 217 134-373 50-286 (306)
95 2pzi_A Probable serine/threoni 99.0 2.1E-09 7.1E-14 121.6 15.8 174 181-360 402-583 (681)
96 1qqe_A Vesicular transport pro 99.0 1.5E-08 5E-13 101.8 20.2 167 124-303 44-227 (292)
97 4ga2_A E3 SUMO-protein ligase 99.0 1.6E-09 5.4E-14 96.3 11.0 146 176-325 3-149 (150)
98 4ga2_A E3 SUMO-protein ligase 99.0 2.2E-09 7.5E-14 95.3 11.3 144 89-254 4-148 (150)
99 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.8E-08 1.3E-12 94.4 20.2 188 169-377 3-216 (225)
100 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.2E-08 1.4E-12 94.1 20.3 190 116-341 3-215 (225)
101 2uy1_A Cleavage stimulation fa 99.0 9.5E-07 3.2E-11 95.0 32.8 390 217-684 6-412 (493)
102 2fo7_A Synthetic consensus TPR 99.0 3E-08 1E-12 86.1 17.3 130 172-304 3-132 (136)
103 3dra_A Protein farnesyltransfe 99.0 4.9E-07 1.7E-11 89.6 27.6 188 181-373 44-249 (306)
104 2fo7_A Synthetic consensus TPR 99.0 2.9E-08 1E-12 86.1 17.1 127 208-337 4-130 (136)
105 2r5s_A Uncharacterized protein 98.9 8.5E-09 2.9E-13 94.6 13.6 62 275-336 108-170 (176)
106 3qou_A Protein YBBN; thioredox 98.9 2E-08 7E-13 100.3 17.3 164 169-337 116-282 (287)
107 3mv2_B Coatomer subunit epsilo 98.9 1.5E-07 5.1E-12 92.0 22.5 246 250-553 23-286 (310)
108 3qou_A Protein YBBN; thioredox 98.9 2.1E-08 7.4E-13 100.1 17.2 168 115-303 115-283 (287)
109 2r5s_A Uncharacterized protein 98.9 1.3E-08 4.3E-13 93.4 14.0 162 208-373 9-172 (176)
110 2uy1_A Cleavage stimulation fa 98.9 1.8E-06 6E-11 92.9 32.4 357 184-579 28-412 (493)
111 3rjv_A Putative SEL1 repeat pr 98.9 1.2E-07 4E-12 89.9 19.9 176 188-375 4-198 (212)
112 3rjv_A Putative SEL1 repeat pr 98.8 3.7E-07 1.3E-11 86.4 21.2 177 222-410 3-198 (212)
113 2vsy_A XCC0866; transferase, g 98.8 5.9E-08 2E-12 107.9 17.9 153 131-305 3-158 (568)
114 2vsy_A XCC0866; transferase, g 98.8 5.1E-08 1.7E-12 108.4 17.1 156 183-342 2-160 (568)
115 3q7a_A Farnesyltransferase alp 98.8 3.3E-06 1.1E-10 84.4 26.4 218 133-373 70-330 (349)
116 4gco_A Protein STI-1; structur 98.7 2E-07 6.8E-12 79.5 14.5 99 169-269 12-110 (126)
117 2ifu_A Gamma-SNAP; membrane fu 98.7 3.4E-07 1.2E-11 92.5 18.3 160 95-268 4-183 (307)
118 3q7a_A Farnesyltransferase alp 98.7 6.7E-06 2.3E-10 82.2 26.9 185 172-361 56-258 (349)
119 4f3v_A ESX-1 secretion system 98.7 2.1E-07 7.2E-12 89.7 15.5 199 129-351 18-247 (282)
120 2ifu_A Gamma-SNAP; membrane fu 98.7 2.3E-07 7.8E-12 93.8 16.0 200 129-337 3-222 (307)
121 3gyz_A Chaperone protein IPGC; 98.7 2.3E-07 7.8E-12 81.6 13.8 104 169-276 35-138 (151)
122 2c2l_A CHIP, carboxy terminus 98.7 7.6E-08 2.6E-12 95.7 11.9 191 171-373 5-198 (281)
123 2c2l_A CHIP, carboxy terminus 98.7 8.4E-08 2.9E-12 95.4 11.2 195 204-409 3-199 (281)
124 4f3v_A ESX-1 secretion system 98.7 3.8E-07 1.3E-11 88.0 14.9 201 94-305 18-238 (282)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.7E-06 5.8E-11 81.9 18.4 91 209-304 10-100 (213)
126 1a17_A Serine/threonine protei 98.6 1.1E-06 3.8E-11 79.2 16.3 131 169-302 12-144 (166)
127 4gco_A Protein STI-1; structur 98.6 1E-06 3.4E-11 75.1 14.8 110 117-247 13-122 (126)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.1E-06 7.2E-11 81.3 18.6 128 172-305 8-151 (213)
129 3u3w_A Transcriptional activat 98.6 5.4E-06 1.9E-10 83.0 22.2 156 529-684 84-265 (293)
130 2lni_A Stress-induced-phosphop 98.6 1.2E-06 4.1E-11 75.5 14.8 121 166-289 12-132 (133)
131 1a17_A Serine/threonine protei 98.6 2E-06 6.9E-11 77.5 16.5 131 117-268 13-145 (166)
132 1na0_A Designed protein CTPR3; 98.5 2.4E-06 8.1E-11 72.5 15.7 114 170-286 9-122 (125)
133 2vyi_A SGTA protein; chaperone 98.5 1.8E-06 6.2E-11 74.0 15.1 120 169-291 11-130 (131)
134 3gyz_A Chaperone protein IPGC; 98.5 9.4E-07 3.2E-11 77.7 13.0 104 116-241 35-138 (151)
135 2e2e_A Formate-dependent nitri 98.5 8.9E-07 3E-11 81.0 13.2 120 129-269 22-144 (177)
136 2qfc_A PLCR protein; TPR, HTH, 98.5 9.1E-06 3.1E-10 81.3 21.5 165 172-336 77-263 (293)
137 3u3w_A Transcriptional activat 98.5 1.2E-05 4.1E-10 80.5 22.3 163 174-336 79-263 (293)
138 1na0_A Designed protein CTPR3; 98.5 2.8E-06 9.5E-11 72.1 15.0 97 206-304 10-106 (125)
139 2vgx_A Chaperone SYCD; alterna 98.5 5.2E-07 1.8E-11 79.5 10.5 99 169-269 20-118 (148)
140 1p5q_A FKBP52, FK506-binding p 98.5 2.2E-07 7.5E-12 95.0 8.7 122 205-329 147-283 (336)
141 1p5q_A FKBP52, FK506-binding p 98.5 2.6E-06 8.8E-11 87.0 16.3 133 169-303 146-293 (336)
142 2vgx_A Chaperone SYCD; alterna 98.5 8.8E-07 3E-11 78.0 11.2 110 192-304 9-118 (148)
143 2lni_A Stress-induced-phosphop 98.5 3E-06 1E-10 72.9 14.4 117 82-219 16-132 (133)
144 2vyi_A SGTA protein; chaperone 98.5 3.7E-06 1.3E-10 72.0 14.9 120 116-256 11-130 (131)
145 2e2e_A Formate-dependent nitri 98.5 2E-06 6.7E-11 78.7 13.8 122 181-305 21-145 (177)
146 3upv_A Heat shock protein STI1 98.5 4.1E-06 1.4E-10 71.4 14.9 99 169-269 3-101 (126)
147 2qfc_A PLCR protein; TPR, HTH, 98.5 1.7E-05 5.8E-10 79.4 21.4 174 117-303 75-265 (293)
148 3dss_A Geranylgeranyl transfer 98.4 9.6E-05 3.3E-09 73.5 25.9 190 180-374 39-267 (331)
149 3dss_A Geranylgeranyl transfer 98.4 8.7E-05 3E-09 73.8 25.5 221 130-374 42-304 (331)
150 4gcn_A Protein STI-1; structur 98.4 3E-06 1E-10 72.2 13.1 106 170-278 8-119 (127)
151 3gw4_A Uncharacterized protein 98.4 1.8E-06 6.1E-11 81.0 12.5 120 182-302 4-134 (203)
152 2xcb_A PCRH, regulatory protei 98.4 3.9E-06 1.3E-10 73.4 12.8 99 169-269 17-115 (142)
153 3gw4_A Uncharacterized protein 98.4 4.4E-06 1.5E-10 78.3 14.1 161 94-268 4-175 (203)
154 2fbn_A 70 kDa peptidylprolyl i 98.4 5.6E-07 1.9E-11 84.2 7.7 119 207-328 40-174 (198)
155 1elw_A TPR1-domain of HOP; HOP 98.4 1.4E-05 4.9E-10 66.7 15.8 99 170-270 4-102 (118)
156 2xcb_A PCRH, regulatory protei 98.4 4.6E-06 1.6E-10 72.8 12.9 99 116-234 17-115 (142)
157 3upv_A Heat shock protein STI1 98.3 7.1E-06 2.4E-10 69.9 13.1 94 243-338 7-100 (126)
158 3sz7_A HSC70 cochaperone (SGT) 98.3 1.3E-05 4.6E-10 71.9 15.0 100 168-269 9-108 (164)
159 1hxi_A PEX5, peroxisome target 98.3 4.9E-06 1.7E-10 70.2 11.2 96 172-269 19-114 (121)
160 1elw_A TPR1-domain of HOP; HOP 98.3 2E-05 6.8E-10 65.8 15.0 93 208-302 7-99 (118)
161 1elr_A TPR2A-domain of HOP; HO 98.3 6.4E-06 2.2E-10 70.5 11.8 112 170-284 4-121 (131)
162 2fbn_A 70 kDa peptidylprolyl i 98.3 1.1E-05 3.9E-10 75.1 14.1 132 170-303 38-185 (198)
163 3sz7_A HSC70 cochaperone (SGT) 98.3 1.5E-05 5E-10 71.7 14.0 100 116-235 10-109 (164)
164 3q49_B STIP1 homology and U bo 98.2 1.7E-05 5.7E-10 68.6 13.8 100 168-269 7-106 (137)
165 1hxi_A PEX5, peroxisome target 98.2 7.8E-06 2.7E-10 68.9 11.0 96 119-234 19-114 (121)
166 3q49_B STIP1 homology and U bo 98.2 1.6E-05 5.5E-10 68.8 13.2 100 115-234 7-106 (137)
167 2kck_A TPR repeat; tetratricop 98.2 1.3E-05 4.4E-10 66.2 12.0 60 208-268 9-68 (112)
168 4gcn_A Protein STI-1; structur 98.2 1.9E-05 6.6E-10 67.1 13.1 108 117-245 8-121 (127)
169 2kck_A TPR repeat; tetratricop 98.2 9.6E-06 3.3E-10 67.1 11.0 99 170-270 6-107 (112)
170 2dba_A Smooth muscle cell asso 98.2 3.6E-05 1.2E-09 67.5 15.1 97 240-339 28-128 (148)
171 2dba_A Smooth muscle cell asso 98.2 4E-05 1.4E-09 67.2 14.8 100 168-269 26-128 (148)
172 2xev_A YBGF; tetratricopeptide 98.1 3.5E-05 1.2E-09 65.7 13.3 95 173-269 5-105 (129)
173 4b4t_Q 26S proteasome regulato 98.1 9.9E-05 3.4E-09 78.6 19.7 199 174-372 8-243 (434)
174 1elr_A TPR2A-domain of HOP; HO 98.1 2.6E-05 9E-10 66.5 12.2 113 117-250 4-122 (131)
175 2xev_A YBGF; tetratricopeptide 98.1 6.4E-05 2.2E-09 64.0 14.2 99 120-235 5-106 (129)
176 3rkv_A Putative peptidylprolyl 98.0 5.1E-05 1.7E-09 67.9 12.7 100 169-269 10-126 (162)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 4.9E-05 1.7E-09 81.2 14.7 139 169-330 267-405 (457)
178 2hr2_A Hypothetical protein; a 98.0 6.6E-05 2.3E-09 65.0 12.2 97 171-268 12-130 (159)
179 3ro3_A PINS homolog, G-protein 98.0 3.7E-05 1.2E-09 68.6 11.4 134 169-302 8-156 (164)
180 1wao_1 Serine/threonine protei 98.0 4E-06 1.4E-10 90.0 5.6 124 173-299 9-134 (477)
181 1dce_A Protein (RAB geranylger 98.0 0.0002 6.9E-09 78.2 18.9 135 132-288 44-191 (567)
182 1wao_1 Serine/threonine protei 98.0 5.5E-06 1.9E-10 88.9 6.5 123 122-265 11-135 (477)
183 3k9i_A BH0479 protein; putativ 98.0 1.8E-05 6.3E-10 66.2 8.2 87 182-269 2-90 (117)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 8E-05 2.7E-09 79.6 15.1 146 116-267 267-413 (457)
185 1ihg_A Cyclophilin 40; ppiase 98.0 8.3E-05 2.8E-09 76.7 14.5 139 118-261 224-362 (370)
186 4b4t_Q 26S proteasome regulato 98.0 0.00017 5.7E-09 76.8 17.5 215 122-338 9-244 (434)
187 1ihg_A Cyclophilin 40; ppiase 98.0 5.7E-05 2E-09 77.9 13.2 139 170-330 223-361 (370)
188 3rkv_A Putative peptidylprolyl 98.0 8.4E-05 2.9E-09 66.4 12.6 110 117-235 11-127 (162)
189 2hr2_A Hypothetical protein; a 97.9 0.00011 3.7E-09 63.7 12.4 109 118-234 12-131 (159)
190 1dce_A Protein (RAB geranylger 97.9 0.00028 9.5E-09 77.1 18.7 177 181-362 39-243 (567)
191 3k9i_A BH0479 protein; putativ 97.9 1.5E-05 5.1E-10 66.7 6.7 97 719-818 3-101 (117)
192 3ro3_A PINS homolog, G-protein 97.9 6E-05 2.1E-09 67.2 10.9 97 206-302 10-116 (164)
193 2if4_A ATFKBP42; FKBP-like, al 97.8 5.9E-05 2E-09 76.9 10.3 143 118-269 180-328 (338)
194 2if4_A ATFKBP42; FKBP-like, al 97.8 4.7E-05 1.6E-09 77.7 9.3 148 206-374 180-328 (338)
195 3n71_A Histone lysine methyltr 97.8 0.00016 5.5E-09 76.8 13.3 132 126-268 318-463 (490)
196 1zu2_A Mitochondrial import re 97.7 7E-05 2.4E-09 64.7 7.6 104 718-826 14-139 (158)
197 1klx_A Cysteine rich protein B 97.7 0.00076 2.6E-08 58.0 14.2 110 255-375 10-127 (138)
198 1klx_A Cysteine rich protein B 97.7 0.00068 2.3E-08 58.3 13.5 111 184-305 9-127 (138)
199 2l6j_A TPR repeat-containing p 97.7 0.00035 1.2E-08 57.3 11.1 86 740-828 3-95 (111)
200 1na3_A Designed protein CTPR2; 97.7 0.00051 1.7E-08 53.8 11.3 83 169-253 8-90 (91)
201 2l6j_A TPR repeat-containing p 97.6 6.3E-05 2.2E-09 62.0 6.0 94 169-265 3-103 (111)
202 3n71_A Histone lysine methyltr 97.6 0.00047 1.6E-08 73.3 13.9 130 93-233 320-463 (490)
203 1zu2_A Mitochondrial import re 97.6 0.00013 4.3E-09 63.1 7.7 99 181-283 13-132 (158)
204 2kat_A Uncharacterized protein 97.5 0.00042 1.4E-08 57.4 9.8 100 724-825 3-103 (115)
205 2kat_A Uncharacterized protein 97.5 0.00076 2.6E-08 55.8 10.2 79 188-268 3-81 (115)
206 1na3_A Designed protein CTPR2; 97.4 0.00091 3.1E-08 52.3 10.1 83 116-218 8-90 (91)
207 1pc2_A Mitochondria fission pr 97.3 0.0017 6E-08 55.3 10.5 101 719-823 11-116 (152)
208 3ma5_A Tetratricopeptide repea 97.2 0.0013 4.3E-08 52.8 8.8 86 740-826 6-92 (100)
209 3ma5_A Tetratricopeptide repea 97.2 0.0014 4.7E-08 52.6 8.9 64 169-233 6-69 (100)
210 4ady_A RPN2, 26S proteasome re 97.0 0.69 2.3E-05 52.2 46.3 310 494-827 383-722 (963)
211 3lvg_A Clathrin heavy chain 1; 97.0 4.2E-06 1.4E-10 84.2 -10.4 390 313-763 86-534 (624)
212 3bee_A Putative YFRE protein; 96.9 0.0075 2.6E-07 47.1 10.0 84 738-825 3-90 (93)
213 3ly7_A Transcriptional activat 96.9 0.016 5.5E-07 57.7 14.2 77 738-818 274-350 (372)
214 3lvg_A Clathrin heavy chain 1; 96.7 1.1E-06 3.9E-11 88.2 -16.4 118 169-301 53-170 (624)
215 3qww_A SET and MYND domain-con 96.7 0.01 3.5E-07 61.8 12.2 94 94-198 310-410 (433)
216 3bee_A Putative YFRE protein; 96.7 0.012 4.2E-07 45.9 9.7 47 186-233 25-71 (93)
217 3qww_A SET and MYND domain-con 96.7 0.0052 1.8E-07 64.1 9.7 94 129-233 310-410 (433)
218 3u64_A Protein TP_0956; tetrat 96.6 0.097 3.3E-06 49.9 17.0 93 256-350 179-282 (301)
219 3ly7_A Transcriptional activat 96.6 0.083 2.8E-06 52.7 17.1 64 274-339 276-339 (372)
220 2kc7_A BFR218_protein; tetratr 96.5 0.024 8E-07 44.9 10.3 83 175-267 5-88 (99)
221 2v5f_A Prolyl 4-hydroxylase su 96.4 0.027 9.4E-07 45.1 10.1 73 740-814 4-82 (104)
222 1nzn_A CGI-135 protein, fissio 96.3 0.023 7.8E-07 46.4 9.1 98 721-822 16-118 (126)
223 3qwp_A SET and MYND domain-con 96.2 0.024 8.3E-07 59.1 11.5 100 123-233 293-399 (429)
224 3qwp_A SET and MYND domain-con 96.2 0.03 1E-06 58.5 12.0 94 94-198 299-399 (429)
225 2kc7_A BFR218_protein; tetratr 96.2 0.037 1.3E-06 43.7 10.1 84 122-233 5-89 (99)
226 1wy6_A Hypothetical protein ST 96.1 0.25 8.7E-06 40.2 13.8 67 621-688 91-157 (172)
227 3mkq_A Coatomer beta'-subunit; 96.0 0.23 8E-06 57.3 19.8 99 425-544 662-760 (814)
228 3mkq_A Coatomer beta'-subunit; 95.9 0.42 1.4E-05 55.1 21.4 100 244-370 633-732 (814)
229 2v5f_A Prolyl 4-hydroxylase su 95.7 0.085 2.9E-06 42.2 10.0 66 169-234 4-75 (104)
230 1pc2_A Mitochondria fission pr 95.5 0.084 2.9E-06 44.9 9.7 65 619-684 30-99 (152)
231 4ady_A RPN2, 26S proteasome re 95.4 4.7 0.00016 45.7 45.1 168 530-705 500-675 (963)
232 3u64_A Protein TP_0956; tetrat 95.2 0.15 5.1E-06 48.6 11.2 68 169-236 198-271 (301)
233 1y8m_A FIS1; mitochondria, unk 95.1 0.66 2.3E-05 38.6 13.3 84 737-822 35-121 (144)
234 3mkq_B Coatomer subunit alpha; 95.0 1.6 5.4E-05 38.2 16.1 103 212-335 12-114 (177)
235 3o48_A Mitochondria fission 1 94.9 0.26 9E-06 40.3 10.3 92 736-829 35-133 (134)
236 4h7y_A Dual specificity protei 94.9 0.4 1.4E-05 40.2 11.5 103 169-273 12-127 (161)
237 3mkq_B Coatomer subunit alpha; 94.7 1.6 5.3E-05 38.2 15.4 100 425-545 15-114 (177)
238 4h7y_A Dual specificity protei 94.7 0.4 1.4E-05 40.2 10.9 104 238-343 11-127 (161)
239 1wy6_A Hypothetical protein ST 92.8 3.5 0.00012 33.8 17.3 139 181-341 18-156 (172)
240 1nzn_A CGI-135 protein, fissio 92.8 0.3 1E-05 39.9 6.9 79 569-649 19-102 (126)
241 2wpv_A GET4, UPF0363 protein Y 92.5 4.5 0.00016 39.3 16.1 18 631-648 198-215 (312)
242 2wpv_A GET4, UPF0363 protein Y 92.2 9 0.00031 37.2 18.0 27 518-544 132-158 (312)
243 4b4t_P 26S proteasome regulato 91.7 7.7 0.00026 40.4 18.2 187 184-372 30-245 (445)
244 4gns_B Protein CSD3, chitin bi 91.3 2.7 9.2E-05 46.6 14.6 55 748-803 344-398 (754)
245 4gns_B Protein CSD3, chitin bi 90.7 2.3 8E-05 47.1 13.4 130 170-300 248-396 (754)
246 3lpz_A GET4 (YOR164C homolog); 89.8 16 0.00054 35.8 18.2 26 518-543 134-159 (336)
247 2ff4_A Probable regulatory pro 89.4 4 0.00014 41.6 13.3 66 211-277 177-247 (388)
248 1v54_E Cytochrome C oxidase po 89.2 2 7E-05 32.9 7.8 62 759-821 28-89 (109)
249 4fhn_B Nucleoporin NUP120; pro 88.5 7.5 0.00026 46.3 16.6 177 170-372 842-1048(1139)
250 2ff4_A Probable regulatory pro 88.2 2.8 9.7E-05 42.8 11.2 73 743-816 173-250 (388)
251 3ffl_A Anaphase-promoting comp 88.0 4 0.00014 35.0 9.8 133 172-319 22-164 (167)
252 1y8m_A FIS1; mitochondria, unk 87.4 8.1 0.00028 32.1 11.0 68 583-650 36-106 (144)
253 4fhn_B Nucleoporin NUP120; pro 85.7 9.9 0.00034 45.3 15.5 88 311-400 900-991 (1139)
254 3o48_A Mitochondria fission 1 84.8 7.7 0.00026 31.8 9.5 57 719-777 56-112 (134)
255 3ffl_A Anaphase-promoting comp 84.5 5.6 0.00019 34.1 9.0 121 206-339 21-151 (167)
256 2y69_E Cytochrome C oxidase su 83.6 11 0.00036 30.9 9.5 64 759-823 71-134 (152)
257 1v54_E Cytochrome C oxidase po 81.8 5.4 0.00018 30.7 6.9 62 721-783 25-86 (109)
258 1zbp_A Hypothetical protein VP 80.8 6.5 0.00022 36.9 8.7 64 751-817 7-70 (273)
259 4b4t_P 26S proteasome regulato 80.4 57 0.002 33.7 21.1 51 463-513 29-84 (445)
260 2p58_C Putative type III secre 79.9 12 0.00041 28.6 8.1 79 720-806 21-99 (116)
261 2y69_E Cytochrome C oxidase su 79.1 22 0.00075 29.1 9.9 63 150-213 68-130 (152)
262 2uwj_G Type III export protein 77.5 12 0.0004 28.6 7.4 79 720-806 20-98 (115)
263 3lpz_A GET4 (YOR164C homolog); 77.4 57 0.0019 31.9 21.8 24 275-298 136-159 (336)
264 1zbp_A Hypothetical protein VP 76.9 6.4 0.00022 36.9 7.4 55 284-339 6-60 (273)
265 2p58_C Putative type III secre 76.4 19 0.00065 27.6 8.2 88 183-279 20-107 (116)
266 4b4t_R RPN7, 26S proteasome re 73.8 19 0.00065 37.2 11.1 61 312-372 133-195 (429)
267 2uwj_G Type III export protein 72.9 18 0.00061 27.7 7.3 88 183-279 19-106 (115)
268 4b4t_R RPN7, 26S proteasome re 69.8 29 0.00098 35.8 11.3 61 242-302 133-195 (429)
269 3esl_A Checkpoint serine/threo 68.9 34 0.0012 30.5 9.7 53 291-343 95-148 (202)
270 4a1g_A Mitotic checkpoint seri 61.7 61 0.0021 27.3 9.5 50 294-343 84-134 (152)
271 3txn_A 26S proteasome regulato 60.9 1.4E+02 0.0049 30.0 22.6 27 486-512 20-46 (394)
272 1qsa_A Protein (soluble lytic 60.4 1.9E+02 0.0065 31.3 34.6 340 94-474 84-437 (618)
273 3ltm_A Alpha-REP4; protein eng 59.3 98 0.0033 27.6 18.9 79 204-290 94-172 (211)
274 3esl_A Checkpoint serine/threo 55.5 32 0.0011 30.6 7.1 55 722-776 95-150 (202)
275 2wvi_A Mitotic checkpoint seri 54.8 86 0.0029 26.9 9.4 50 294-343 79-129 (164)
276 4a1g_A Mitotic checkpoint seri 53.8 26 0.00087 29.6 5.9 52 760-811 84-136 (152)
277 2wvi_A Mitotic checkpoint seri 52.5 29 0.001 29.7 6.2 54 724-777 78-132 (164)
278 3pvs_A Replication-associated 51.7 2.1E+02 0.0072 29.4 13.9 67 661-737 257-326 (447)
279 3ltm_A Alpha-REP4; protein eng 51.3 1.3E+02 0.0045 26.7 18.6 147 175-338 38-184 (211)
280 1bpo_A Protein (clathrin); cla 48.3 1.7E+02 0.006 29.9 11.8 57 82-141 329-385 (494)
281 4b4t_S RPN3, 26S proteasome re 46.9 90 0.0031 32.6 9.9 65 275-339 231-299 (523)
282 4aez_C MAD3, mitotic spindle c 42.4 1.9E+02 0.0065 26.2 10.1 52 187-238 131-183 (223)
283 4aez_C MAD3, mitotic spindle c 39.4 45 0.0015 30.3 5.5 50 725-774 133-183 (223)
284 2keb_A DNA polymerase subunit 38.9 92 0.0031 23.7 6.1 61 760-822 28-93 (101)
285 2r9g_A AAA ATPase, central reg 35.6 2.3E+02 0.008 25.0 10.6 72 662-744 17-91 (204)
286 3eiq_C Programmed cell death p 35.2 2.6E+02 0.0088 27.7 10.8 23 490-512 222-244 (358)
287 2d2s_A Exocyst complex compone 33.1 2.3E+02 0.0078 26.0 9.4 30 343-372 89-118 (235)
288 1qsa_A Protein (soluble lytic 32.6 5E+02 0.017 28.0 39.9 86 165-256 67-152 (618)
289 3mv2_A Coatomer subunit alpha; 32.5 3.5E+02 0.012 26.1 13.1 48 758-805 187-236 (325)
290 1wdy_A 2-5A-dependent ribonucl 31.3 2.1E+02 0.0073 26.5 9.8 17 246-262 8-24 (285)
291 4b4t_S RPN3, 26S proteasome re 30.9 3E+02 0.01 28.8 10.8 27 486-512 232-258 (523)
292 2d2s_A Exocyst complex compone 30.8 3.1E+02 0.011 25.1 9.9 23 175-197 23-45 (235)
293 2zu6_B Programmed cell death p 30.5 61 0.0021 31.4 5.3 24 555-578 170-193 (307)
294 1wdy_A 2-5A-dependent ribonucl 28.9 1.4E+02 0.0047 27.9 7.9 78 726-811 199-281 (285)
295 2xig_A Ferric uptake regulatio 27.6 2E+02 0.0067 24.1 7.5 58 336-394 18-75 (150)
296 3txn_A 26S proteasome regulato 25.5 5.2E+02 0.018 25.9 30.2 29 169-197 18-46 (394)
297 3t8k_A Uncharacterized protein 24.7 1.5E+02 0.0051 25.9 6.6 25 667-691 46-70 (186)
298 3l6a_A Eukaryotic translation 24.3 3E+02 0.01 27.3 9.2 25 624-648 15-39 (364)
299 2fe3_A Peroxide operon regulat 24.1 2.1E+02 0.007 23.8 7.0 44 351-394 27-70 (145)
300 4gq2_M Nucleoporin NUP120; bet 23.7 3.3E+02 0.011 31.4 10.8 48 312-359 899-950 (950)
301 2crb_A Nuclear receptor bindin 23.7 1.2E+02 0.0043 22.7 4.5 29 169-197 14-42 (97)
302 2zu6_B Programmed cell death p 23.5 3.9E+02 0.013 25.7 9.6 64 454-518 170-235 (307)
303 2nsz_A Programmed cell death p 23.2 2.2E+02 0.0076 23.1 6.8 63 314-377 11-75 (129)
304 2qx5_A Nucleoporin NIC96; mRNA 23.1 7.5E+02 0.026 26.9 20.1 81 246-337 300-383 (661)
305 3ctd_A Putative ATPase, AAA fa 23.0 4.1E+02 0.014 23.7 10.1 74 661-744 37-113 (213)
306 1wgl_A TOLL-interacting protei 22.7 1E+02 0.0035 21.0 3.8 37 80-116 21-57 (59)
307 2fe3_A Peroxide operon regulat 22.5 3.1E+02 0.01 22.7 7.8 48 208-255 24-71 (145)
308 4gq2_M Nucleoporin NUP120; bet 22.5 4.7E+02 0.016 30.1 11.7 48 382-429 899-950 (950)
309 3bge_A Predicted ATPase; struc 22.3 4.1E+02 0.014 23.5 10.1 45 662-706 10-57 (201)
310 3jxi_A Vanilloid receptor-rela 22.3 1.7E+02 0.006 26.9 7.1 18 426-443 13-30 (260)
311 2ijq_A Hypothetical protein; s 21.3 3.8E+02 0.013 22.8 8.0 52 322-373 44-103 (161)
312 3ltj_A Alpharep-4; protein eng 21.1 4.1E+02 0.014 23.0 19.7 176 166-361 24-199 (201)
313 2keb_A DNA polymerase subunit 21.0 2.8E+02 0.0096 21.1 6.1 58 723-782 26-88 (101)
314 1mzb_A Ferric uptake regulatio 20.9 2E+02 0.007 23.5 6.2 44 351-394 23-67 (136)
315 3mkr_B Coatomer subunit alpha; 20.3 5.8E+02 0.02 24.6 11.7 18 667-684 113-130 (320)
316 1bpo_A Protein (clathrin); cla 20.3 5.1E+02 0.018 26.6 9.7 84 183-270 342-425 (494)
317 2nsz_A Programmed cell death p 20.1 3.5E+02 0.012 21.9 8.5 23 419-441 11-33 (129)
318 2ion_A PDCD4, programmed cell 20.1 3.1E+02 0.011 23.0 7.2 100 454-564 13-114 (152)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-38 Score=355.65 Aligned_cols=512 Identities=10% Similarity=-0.008 Sum_probs=328.2
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 003315 180 YVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEA 259 (831)
Q Consensus 180 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (831)
+...|.+..+...+..+ +.++...++.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 34445555554444332 2346677788888888888888888888887753 36777777788888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 260 VEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
+.+|+++... +++..+++.++.+|.+.|++++|.++|+++... +.. ...+.+.++ ...
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-----~~~~~~~~~-----------~~~ 194 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF----RKD-----EKNANKLLM-----------QDG 194 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT----C---------------C-----------CCS
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc----ccc-----ccccccccc-----------ccc
Confidence 8888877543 567777777777788888888877777742111 100 000000000 011
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHH--HH-HHHHHHCCCCcCHh
Q 003315 340 GVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATI--KQ-FLEFKDMGFFLNKV 416 (831)
Q Consensus 340 ~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~ 416 (831)
+..++..+|+.++.+|.+.|++++|++.|+++.+.+.. +...+..+...+...+..+... .+ +..+...+..+...
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 23345666777777777777777777777777664322 2233333332222221111111 00 23333333444556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 003315 417 CYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFA 496 (831)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 496 (831)
+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+.++. +..++..++.++.
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLH 350 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHH
Confidence 6777788888889999999999888764 468888999999999999999999999998877644 7788888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHH
Q 003315 497 QYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQL 573 (831)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~ 573 (831)
+.|++++|..+++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.+|.. |+.++..|.+.|++++|+++
T Consensus 351 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999888653 5667778888888888888888888777766544432 55555555555555555555
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003315 574 FMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLT 653 (831)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 653 (831)
|+++.+. + +.+..++..++.+|.+.|++++|.++|+++.+....
T Consensus 430 ~~~~~~~-----------------------------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 430 YTTAARL-----------------------------------F-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473 (597)
T ss_dssp HHHHHHT-----------------------------------T-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHh-----------------------------------C-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5555443 2 345667777888888888888888888888775433
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHH
Q 003315 654 PHLVTYTMMIHGYCKINCLREARDVFNDMKQR----GITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFW 729 (831)
Q Consensus 654 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 729 (831)
+..+|+.++..|.+.|++++|+++|+++.+. +..|+.
T Consensus 474 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~-------------------------------------- 514 (597)
T 2xpi_A 474 -DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP-------------------------------------- 514 (597)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG--------------------------------------
T ss_pred -ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh--------------------------------------
Confidence 6778888888888888888888888888764 333330
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003315 730 NEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQG 809 (831)
Q Consensus 730 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 809 (831)
...+|..++.+|.+.|++++|++.++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+ +.|
T Consensus 515 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p 581 (597)
T 2xpi_A 515 ----------WAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISP 581 (597)
T ss_dssp ----------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred ----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCC
Confidence 03355566666666677777777777766542 33566667777777777777777777777666 455
Q ss_pred CHH
Q 003315 810 DDY 812 (831)
Q Consensus 810 d~~ 812 (831)
+..
T Consensus 582 ~~~ 584 (597)
T 2xpi_A 582 NEI 584 (597)
T ss_dssp TCH
T ss_pred CCh
Confidence 543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-37 Score=350.69 Aligned_cols=499 Identities=9% Similarity=-0.026 Sum_probs=356.1
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
.+...|..++..|.+.|++++|+.+|+++... .|+..++..++.++.+.|++++|..+|+.+... ++++.+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56778999999999999999999999999865 457788899999999999999999999998653 58899999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
.+|.+.|++++|+++|+++.. +.. ...++...++. ..+.+.+..+|+.++.+|.+.|+++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLMQ-----------DGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCT-----TC--------------CC-----------CSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCC-----ccc----ccccccccccc-----------ccccchhHHHHHHHHHHHHHcCCHH
Confidence 999999999999999986322 110 00011111111 1123445556666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH--H-HHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALL--L-HHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFL 404 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~--~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 404 (831)
+|.++|+++.+.++. +...+..++..+...+..+.+.. + +..+...+..+...++..++..|.+.|++++|.+.|+
T Consensus 218 ~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 666666666654332 34444444443333322221111 1 3333333333333444444555666666666666666
Q ss_pred HHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCC
Q 003315 405 EFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPD 484 (831)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 484 (831)
.+.+. +++..+++.++.+|.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|.++++++.+..+ .+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-cc
Confidence 65544 35677777777777777777777777777765543 2566777777777777888888888877775543 35
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHH
Q 003315 485 IITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGY 561 (831)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~ 561 (831)
..++..++..|.+.|++++|.++|+++.+.. +.+..++..++.+|.+.|++++|.++|+++....|.. |..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 6677777777777888888888887777653 4456677777778888888888888887777665543 77778888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcC
Q 003315 562 CKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITL----NAEPS--KSMYDKLIGALCQAE 635 (831)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g 635 (831)
.+.|++++|.++|+++.+..+. +..++..++..+.+.|++++|.++++++.+. +..|+ ..+|..++.+|.+.|
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 8888888888888888776554 6778888888888888888888888888776 55677 789999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 003315 636 EMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPD-VVTYTVLFDA 700 (831)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~ 700 (831)
++++|...|+++.+.++ .+..+|..++.+|.+.|++++|.+.|+++.+. .|+ ...+..+-..
T Consensus 531 ~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRA 593 (597)
T ss_dssp CHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 99999999999998753 37889999999999999999999999999884 554 3444444333
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.3e-26 Score=246.56 Aligned_cols=369 Identities=13% Similarity=0.067 Sum_probs=268.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.++..+.+.|++++|+..+.++.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..++..+.+.|
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 3567788999999999999999988744 67778888899999999999999999988764 567889999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLL 334 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 334 (831)
++++|++.|+++.+.. +.+..++..++.++.+.|++++|...|+++.+.+ |.+...+..+...+...|++++|.+.|+
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998863 3456689999999999999999999999999875 6667788899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 003315 335 HMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLN 414 (831)
Q Consensus 335 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (831)
++.+..+. +..+|..+...+.+.|++++|+..|+++++.++. +...+..+...+...|++++|+..+.+.....+. +
T Consensus 160 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 99987544 6788999999999999999999999999876432 3445555666666666666666666665554322 3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 003315 415 KVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGA 494 (831)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 494 (831)
..++..+...+.+.|++++|++.|+++.+.+.. +..+|..+...+.+.|++++|.+.|+++.+..+ .+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHH
Confidence 455555666666666666666666665554221 344555555666666666666666666655432 244555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC
Q 003315 495 FAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN 553 (831)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 553 (831)
+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.+|..
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 666666666666666655542 3344555555555555555555555555555544443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.3e-26 Score=243.44 Aligned_cols=383 Identities=16% Similarity=0.051 Sum_probs=333.2
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 003315 123 IVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV 202 (831)
Q Consensus 123 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 202 (831)
++..+...|++++|...+..+++..|+ ++.++..++..+...|++++|...++.+++..+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p- 64 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-------------------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP- 64 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Confidence 456677889999999999998888554 456778899999999999999999999998874
Q ss_pred cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 203 WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
.+..++..++.++.+.|++++|...|+++.+.. |.+..+|..++..+.+.|++++|++.|+++.+.. +.+...+..+.
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 142 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 488899999999999999999999999999864 4456789999999999999999999999999864 33456777888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003315 283 EGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKIN 362 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 362 (831)
..+...|++++|.+.|+++.+.. |.+..++..+...+...|++++|...|+++.+.++. +...|..+...+...|+++
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHH
Confidence 89999999999999999999875 667889999999999999999999999999987654 6788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 363 KALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
+|+..+++....... +..++..+...+...|++++|++.++.+.+..+. +..++..+...+.+.|++++|.+.|+++.
T Consensus 221 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 221 RAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999876432 5778889999999999999999999999987543 57789999999999999999999999998
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003315 443 DRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVT 522 (831)
Q Consensus 443 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 522 (831)
+.. +.+..++..+...+...|++++|...++++.+..+ .+..++..+...+.+.|++++|...++++++.. +.+...
T Consensus 299 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a 375 (388)
T 1w3b_A 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADA 375 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHH
T ss_pred hhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH
Confidence 763 44788999999999999999999999999988643 356789999999999999999999999999864 456677
Q ss_pred HHHHHHHHHcCC
Q 003315 523 HNMIIEGLCMGG 534 (831)
Q Consensus 523 ~~~l~~~~~~~g 534 (831)
+..+...+...|
T Consensus 376 ~~~lg~~~~~~~ 387 (388)
T 1w3b_A 376 YSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHhHHHHHHHcc
Confidence 777776665554
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.8e-28 Score=259.38 Aligned_cols=205 Identities=16% Similarity=0.194 Sum_probs=180.5
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC---------HHH
Q 003315 605 ALKLFKTMITLNAEPSK-SMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINC---------LRE 674 (831)
Q Consensus 605 a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---------~~~ 674 (831)
+..+.+++.+.+..+.+ .+++.++++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. .++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444555555554443 46888999999999999999999999999999999999999999987664 688
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003315 675 ARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNT 754 (831)
Q Consensus 675 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 754 (831)
|.++|++|.+.|+.||..||+++|.+|++ .+++++|.++|++|.+.|+.||..+||.+|.+|++.
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~---------------~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVA---------------KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHH---------------HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC
Confidence 99999999999999999999999999998 567999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003315 755 QNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKA 824 (831)
Q Consensus 755 g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~ 824 (831)
|++++|.++|++|.+.|+.||..||++|+.+|++.|++++|.+++++|.+.|+.|+..|++.+...+...
T Consensus 154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999888764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.9e-27 Score=252.09 Aligned_cols=206 Identities=16% Similarity=0.143 Sum_probs=178.5
Q ss_pred HHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 003315 569 EAFQLFMRLSNQGVLVKKS-SCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEE---------ME 638 (831)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---------~~ 638 (831)
.+..+.+++.+.+....+. .++.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4445556666666655544 5788899999999999999999999999999999999999999987665 68
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhc
Q 003315 639 QAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQC 718 (831)
Q Consensus 639 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 718 (831)
+|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~--------------- 152 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR--------------- 152 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH---------------
Confidence 89999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003315 719 KEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAK 789 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~ 789 (831)
.++.++|.++|++|.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 56799999999999999999999999999999999999999999999999999999999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.7e-23 Score=228.36 Aligned_cols=446 Identities=10% Similarity=-0.051 Sum_probs=283.3
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+...+..+.+.|++++|+..|+++++.+ |+..++..++.++.+.|++++|...|+++++.+ +.+..+|..++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 34567789999999999999999999999886 578889999999999999999999999998865 456778999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
++.+.|++++|+..|+++.+.+ +++......++..+........+.+.+..+...+..++...................
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999998875 344444444444444433333333333222221111111100000000000111111
Q ss_pred HHHHHHHHHHCCCC--------C-CHHHHHHHHHHHHh---cCChHHHHHHHHHHHh-----CCCCCCHhhHHHHHHHHH
Q 003315 329 AECVLLHMEKQGVV--------P-DVYAYSALISGYCK---FGKINKALLLHHEMTS-----KGIKTNCGVLSVILKGLC 391 (831)
Q Consensus 329 A~~~~~~~~~~~~~--------p-~~~~~~~li~~~~~---~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~ll~~~~ 391 (831)
...+...+...... | +...+......+.. .|++++|+..++++.+ ....|+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------- 232 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL-------- 232 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH--------
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc--------
Confidence 11111111111000 1 13333334443443 5666666666666655 2112211000
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHH
Q 003315 392 QKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALD 471 (831)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 471 (831)
.+.+...+..+...+...|++++|...++++.+... +...+..+...+...|++++|..
T Consensus 233 -------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 233 -------------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGG
T ss_pred -------------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHH
Confidence 012345666777778888888888888888776533 36677777788888888888888
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC
Q 003315 472 LFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL 551 (831)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 551 (831)
.++++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++....|
T Consensus 292 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 369 (514)
T 2gw1_A 292 YFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369 (514)
T ss_dssp HHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 88888776433 56677777888888888888888888887764 44566777777777788888888888877766555
Q ss_pred CC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCC
Q 003315 552 EN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVK-----KSSCNKLITNLLI---LRDNNNALKLFKTMITLNAEPS 620 (831)
Q Consensus 552 ~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~ 620 (831)
.. +..++..+...|++++|...++++.+..+... ...+..++..+.. .|++++|...++++.... +.+
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 448 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRS 448 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTC
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-ccc
Confidence 43 66677777777788888777777765533211 2266666777777 777777777777776654 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 621 KSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 650 (831)
..++..++.+|.+.|++++|...|+++.+.
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 566666777777777777777777777765
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.3e-23 Score=229.58 Aligned_cols=451 Identities=11% Similarity=-0.036 Sum_probs=304.4
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003315 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG 284 (831)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (831)
...+...+..+.+.|++++|+..|+++++.. |++..|..++..+.+.|++++|++.++++.+.+ +.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3445556666666777777777777766643 566666666666767777777777777666653 3344566666666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003315 285 LCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKA 364 (831)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 364 (831)
+...|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+......-......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 154 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK------- 154 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh-------
Confidence 666666666666666666654 334444444444444333333333333333332222222111110000000
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 003315 365 LLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCK---LGEVEKAMILFKEM 441 (831)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~ 441 (831)
....|+.......+..+...... .....+.+...+......+.. .|++++|...|+++
T Consensus 155 ---------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 155 ---------QENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ---------ccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 01111211111111000000000 000001124444444554544 78999999999988
Q ss_pred Hh-----CCC--------CCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 003315 442 KD-----RQI--------VPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLL 508 (831)
Q Consensus 442 ~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 508 (831)
.+ ... +.+...+..+...+...|++++|...++++.+..+. ...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77 311 223557778888899999999999999999987644 778888999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 509 NYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVK 585 (831)
Q Consensus 509 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 585 (831)
+.+.+.. +.+..++..+...+...|++++|...++++...+|.. +..++..+...|++++|+..++++.+..+. +
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 371 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-A 371 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-C
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-C
Confidence 9999874 5567788899999999999999999999998887765 777889999999999999999999887654 6
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHh
Q 003315 586 KSSCNKLITNLLILRDNNNALKLFKTMITLNAE-PS----KSMYDKLIGALCQ---AEEMEQAQLVFNVLVDKGLTPHLV 657 (831)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 657 (831)
...+..++..+...|++++|...++++...... ++ ..++..++.++.. .|++++|...++++.+.... +..
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~ 450 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQ 450 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHH
Confidence 788999999999999999999999999875322 11 3488899999999 99999999999999987433 678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQRGITPDVV 692 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 692 (831)
.+..++..|.+.|++++|...|++..+. .|+..
T Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 451 AKIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 8999999999999999999999999984 56543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.3e-21 Score=210.68 Aligned_cols=327 Identities=14% Similarity=0.060 Sum_probs=243.4
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
+.+..++..++..+.+.|++++|+..|+++++..+. +..++..++.++...|++++|...|+++.+.+ +.+...+..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 346778999999999999999999999999987644 78899999999999999999999999999875 4568899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-H---HHHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPN-A---FAYSTC------------IEGLCMNGMLDLGYELLLKWEEADIPLSA 310 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 310 (831)
+..|.+.|++++|++.|+++.+.. |+ . ..+..+ ...+...|++++|...++++.+.. |.+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 999999999999999999999763 44 3 455544 344788889999999998888764 6678
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 003315 311 FAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGL 390 (831)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 390 (831)
.++..++.+|.+.|++++|.+.|+++.+..+. +..++..++.+|.+.|++++|+..|+++.... |+.......+...
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHH
Confidence 88888888888899999999998888876433 67888888888888899999988888887643 2222211111000
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHccCC
Q 003315 391 CQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPD-----VVNYTTMICGYCLQGK 465 (831)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~ 465 (831)
. .......++..+.+.|++++|...|+++.+.. |+ ...+..+...+.+.|+
T Consensus 255 ~----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 255 K----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp H----------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTC
T ss_pred H----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCC
Confidence 0 01112234666777777777777777776542 22 2356667777777788
Q ss_pred hhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 466 LGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMII 527 (831)
Q Consensus 466 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 527 (831)
+++|+..++++.+..+ .+...+..+..+|...|++++|...++++++.. +.+...+..+.
T Consensus 311 ~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 8888888777766532 256677777777777788888888887777643 33444444443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.8e-21 Score=208.92 Aligned_cols=304 Identities=10% Similarity=-0.012 Sum_probs=192.4
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++..+..++..+...|++++|...|.++++..|. ++.++..++.+|...|++++|+..|++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-------------------NYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-------------------cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555566666666666666666666666655332 344566666666666666666666666
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh---hhHHHH------------HHHHHhcCChHHHH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNE---YTYVIV------------IKALCKKGSMQEAV 260 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~ 260 (831)
+++.++. +..++..++.++.+.|++++|...|+++.+.. +.+. ..+..+ ...+.+.|++++|+
T Consensus 86 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 86 VIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666533 55566666666666666666666666666543 2222 333333 33466777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 003315 261 EVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG 340 (831)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (831)
+.|+++.+.. +.+..++..++.+|...|++++|...++++.+.+ |.+..++..++..|...|++++|...|+++.+..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777653 3456677777777777788888877777777654 5567777777777777888888888887777653
Q ss_pred CCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHH
Q 003315 341 VVPDVYAYSAL------------ISGYCKFGKINKALLLHHEMTSKGIKTN---CGVLSVILKGLCQKGMASATIKQFLE 405 (831)
Q Consensus 341 ~~p~~~~~~~l------------i~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~ 405 (831)
+. +...+..+ +..+.+.|++++|+..|+++.+...... ...+..+...+.+.|++++|+..++.
T Consensus 242 p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 242 QD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 32 34444433 6667777777777777777766432200 22455555666666666666666666
Q ss_pred HHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 406 FKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR 444 (831)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (831)
+....+ .+...+..+..+|...|++++|...++++.+.
T Consensus 321 a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 321 VLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 555432 24566666666666777777777777666654
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.2e-21 Score=218.43 Aligned_cols=439 Identities=12% Similarity=0.009 Sum_probs=265.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+..++..+.+.|++++|+..|+++++.++. +..++..++.++.+.|++++|+..|+++++.+ +.+..++..++.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4567889999999999999999999999998754 88899999999999999999999999999875 557888999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEAD--IPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 326 (831)
.+...|++++|++.|+ .... .|+.. ...+..+...+...+|...++++.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 9999999999999996 4432 23322 222344555556678888888876541 011111122334445556666
Q ss_pred hHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh--------cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChH
Q 003315 327 EKAECVLLHMEKQGVVPDVY-AYSALISGYCK--------FGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMAS 397 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 397 (831)
+.+...+...... .+... ....+...+.. .|++++|+..++++.+.... +...+..+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~----------- 242 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA----------- 242 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH-----------
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH-----------
Confidence 6555444433322 22222 22233333222 24677777777777765332 11111100
Q ss_pred HHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHH
Q 003315 398 ATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMK 477 (831)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 477 (831)
..++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|...++++.
T Consensus 243 -----------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 243 -----------------ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 112334445555556666666666655543 2334455555555556666666666666655
Q ss_pred HcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---h
Q 003315 478 EMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---Y 554 (831)
Q Consensus 478 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~ 554 (831)
+..+. +..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++...+|.. +
T Consensus 304 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 381 (537)
T 3fp2_A 304 DLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVP 381 (537)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred ccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 54332 44555555566666666666666666665543 3334455555556666666666666666655554443 5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CcccHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCC
Q 003315 555 SAMINGYCKTGHTKEAFQLFMRLSNQGVLV-----KKSSCNKLITNLLIL----------RDNNNALKLFKTMITLNAEP 619 (831)
Q Consensus 555 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~p 619 (831)
..++..+...|++++|...++++.+..+.. ....+......+... |++++|...++++.+.. +.
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~ 460 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PR 460 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CC
Confidence 555666666666666666666655443211 111133445566666 77777777777777654 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 620 SKSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 620 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 650 (831)
+..++..++.+|.+.|++++|...|+++.+.
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5667777788888888888888888887775
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3.4e-21 Score=214.71 Aligned_cols=429 Identities=13% Similarity=0.006 Sum_probs=253.3
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
....+...+..+...|++++|...|.++++..|. ++.++..++.+|...|++++|+..|++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 84 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-------------------EPVFYSNISACYISTGDLEKVIEFTTK 84 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-------------------CcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3566788899999999999999999999988554 567899999999999999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-----
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAG----- 270 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~----- 270 (831)
+++.++. +..++..++.++...|++++|...|+. ... .|+. ....+..+...+...+|...++++....
T Consensus 85 al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 158 (537)
T 3fp2_A 85 ALEIKPD-HSKALLRRASANESLGNFTDAMFDLSV-LSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158 (537)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHH-Hhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9998754 888899999999999999999999974 332 2322 2223445666677789999999986531
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--------cCCHhHHHHHHHHHHHCCC
Q 003315 271 -VTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD--------QNKLEKAECVLLHMEKQGV 341 (831)
Q Consensus 271 -~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~ 341 (831)
..|+.. .+..+....+.+.+...+....... +........+...+.. .|++++|..+++++.+..+
T Consensus 159 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p 233 (537)
T 3fp2_A 159 QVLPSNT----SLASFFGIFDSHLEVSSVNTSSNYD-TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT 233 (537)
T ss_dssp CCCCCHH----HHHHHHHTSCHHHHHHTSCCCCSSC-SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred cccchHh----HHHHHHHhcChHHHHHHHhhccccc-cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 123332 3334445555555444333222111 1111123333333222 2578999999999988643
Q ss_pred CCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 003315 342 VPDV-------YAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLN 414 (831)
Q Consensus 342 ~p~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (831)
. +. .++..+...+...|++++|...+++..+.. |+...+..+...+...|++++|+..++.+.+.... +
T Consensus 234 ~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 309 (537)
T 3fp2_A 234 V-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-Y 309 (537)
T ss_dssp C-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-C
T ss_pred C-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-C
Confidence 3 32 245566677778888888888888877653 23444444455555555555555555554443321 3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 003315 415 KVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGA 494 (831)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 494 (831)
..++..+...+...|++++|...+++ +.+..+. +...+..+...
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~-----------------------------------a~~~~~~-~~~~~~~la~~ 353 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQK-----------------------------------AQSLNPE-NVYPYIQLACL 353 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------------------HHHHCTT-CSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH-----------------------------------HHHhCCC-CHHHHHHHHHH
Confidence 34444444444444555555554444 4443221 33344444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC---C------hHHHHHHHHhc-
Q 003315 495 FAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLE---N------YSAMINGYCKT- 564 (831)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~------~~~l~~~~~~~- 564 (831)
+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++...+|. . +..+...+...
T Consensus 354 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 432 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 444455555555554444432 233334444444455555555555555444332111 1 12223444445
Q ss_pred ---------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003315 565 ---------GHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLN 616 (831)
Q Consensus 565 ---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 616 (831)
|++++|...|+++.+..+. +...+..++..+...|++++|...++++.+..
T Consensus 433 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 433 SQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 6666777777666665543 55666677777777777777777777777654
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=2.6e-16 Score=178.41 Aligned_cols=541 Identities=12% Similarity=0.113 Sum_probs=359.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHH-H---HHH-----HHHHhcCCCCChh----
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMA-L---AVY-----QHLKRLGLSLNEY---- 241 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~---~~~-----~~~~~~~~~~~~~---- 241 (831)
.|+...-+.+++.--...++.-+..|.. ++.++|+++..|+..++-.+. + ..| -+.-+.. .|...
T Consensus 844 ~lv~~~ekrnrLkll~p~LE~~~~~g~~-~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~r-Dp~la~iay 921 (1630)
T 1xi4_A 844 ELVAEVEKRNRLKLLLPWLEARIHEGCE-EPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKR-DPHLACVAY 921 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhc-CcchHHHHh
Confidence 5566666666666666667766666633 777788888877765543322 1 001 1111100 11110
Q ss_pred ----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCChhhHHH
Q 003315 242 ----TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADI--PLSAFAYTV 315 (831)
Q Consensus 242 ----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 315 (831)
.-..|++...++|.+...-+.+ .+ ..|...|..++. ..+ +.=..+.++.....+ ..++.--..
T Consensus 922 ~~g~~d~eli~vt~~n~l~k~~aryl---v~---r~d~~lW~~vl~---~~n--~~RR~Lidqv~a~aL~e~~~PeeVs~ 990 (1630)
T 1xi4_A 922 ERGQCDLELINVCNENSLFKSLSRYL---VR---RKDPELWGSVLL---ESN--PYRRPLIDQVVQTALSETQDPEEVSV 990 (1630)
T ss_pred cccCCcHHHHHHHhcchhHHHHHHHH---HH---hcCHHHHHHHhc---CCc--HHHHHHHHHHHHhhcccccCHHHhHH
Confidence 0123444444455443322221 11 124444544431 111 111223333222211 224445566
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 003315 316 VIRWFCDQNKLEKAECVLLHMEKQGV--VPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQK 393 (831)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 393 (831)
.++.|...|.+.+|.++++++.-.+- .-+...-+.++....+. +..+..+...+.... + ...+...+...
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISN 1062 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhC
Confidence 78888899999999999999884421 12445566677666666 456666655554421 1 33477778889
Q ss_pred CChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHH
Q 003315 394 GMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLF 473 (831)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 473 (831)
|.+++|..+|++... .....+.++ ...+++++|.++.+++. +..+|..+..++...|++++|...|
T Consensus 1063 glyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999988631 222223332 27788999999988763 5678999999999999999999999
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC
Q 003315 474 KEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN 553 (831)
Q Consensus 474 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 553 (831)
.+. -|...|..++.++.+.|++++|.+.+....+.. +++.....++.+|++.+++++.+.+++ ..+...
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~---~~n~ad 1197 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN---GPNNAH 1197 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh---CCCHHH
Confidence 664 377788889999999999999999999888764 333334458889999999887655542 223344
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQ 633 (831)
Q Consensus 554 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 633 (831)
|..++..|...|++++|..+|..+ ..|..++.++++.|++++|.+.++++ .+..+|..+..+|..
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 777999999999999999999875 47899999999999999999999887 456889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccccCCCCCC
Q 003315 634 AEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPD-VVTYTVLFDAHSKINLKGSSSS 712 (831)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~ 712 (831)
.|++..|......+. .++..+..++..|.+.|.+++|+++++..+. +.|. ...|+-+...+++.
T Consensus 1263 ~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy-------- 1327 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKF-------- 1327 (1630)
T ss_pred hhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhC--------
Confidence 999999998776532 3777888999999999999999999988875 3443 33455555555552
Q ss_pred CchhhcccCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCChHHHHHHH-------------HHHHHCCCC
Q 003315 713 PDALQCKEDVVDASVFWNEMKEMGIRP------DVISYTVLIAKLCNTQNLEDGITVF-------------NEISDRGLE 773 (831)
Q Consensus 713 ~~~~~~~~~~~~a~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~g~~ 773 (831)
..++..++.++|..-. +++| +...|.-++..|.+.|+++.|...+ ...+. -.
T Consensus 1328 -----~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv 1398 (1630)
T 1xi4_A 1328 -----KPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KV 1398 (1630)
T ss_pred -----CHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--cc
Confidence 3466677777766433 2333 4567999999999999999998432 22222 13
Q ss_pred CCHHHHHHHHHHHHhcC---------------CHHHHHHHHH
Q 003315 774 PDTVTYTALLCGYLAKG---------------DLDRAIALVD 800 (831)
Q Consensus 774 pd~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 800 (831)
.|+.+|...+.-|.... |++++.+++.
T Consensus 1399 ~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1399 ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred ccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 35777777777777666 6666666665
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.8e-18 Score=181.33 Aligned_cols=320 Identities=10% Similarity=0.005 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+..+..++..+...|++++|...+.++++..|. ++.++..++..+...|++++|+..|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 63 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-------------------NYIAYYRRATVFLAMGKSKAALPDLTKV 63 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-------------------cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 445555555566666666666666655554332 3345555666666666666666666665
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---CChhhHHHH------------HHHHHhcCChHHHHH
Q 003315 197 NRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS---LNEYTYVIV------------IKALCKKGSMQEAVE 261 (831)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~ 261 (831)
++..+. +..++..++.++...|++++|...|++..+.. + .+...+..+ ...+...|++++|++
T Consensus 64 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 64 IALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 555422 44555555566666666666666666655532 1 122333333 344555566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 003315 262 VFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV 341 (831)
Q Consensus 262 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 341 (831)
.++++.+.. +.+..++..+...+...|++++|...++++.+.. |.+..++..++..+...|++++|...|++..+..+
T Consensus 142 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 142 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 665555542 2344455555555555566666666655555543 44555555555555556666666665555555422
Q ss_pred CCCHHHHH------------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 342 VPDVYAYS------------ALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDM 409 (831)
Q Consensus 342 ~p~~~~~~------------~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 409 (831)
. +...+. .+...+.+.|++++|...++++.+.... +...
T Consensus 220 ~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~--------------------------- 270 (359)
T 3ieg_A 220 D-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEY--------------------------- 270 (359)
T ss_dssp T-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHH---------------------------
T ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHH---------------------------
Confidence 2 222221 1133344445555555544444443211 1100
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHH
Q 003315 410 GFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYN 489 (831)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 489 (831)
....+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++|...|+++.+..+. +...+.
T Consensus 271 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~ 344 (359)
T 3ieg_A 271 ----TVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIRE 344 (359)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHH
T ss_pred ----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHH
Confidence 01223345566666666666666666665532 224556666666666666666666666666654322 333444
Q ss_pred HHHHH
Q 003315 490 VLAGA 494 (831)
Q Consensus 490 ~l~~~ 494 (831)
.+..+
T Consensus 345 ~l~~~ 349 (359)
T 3ieg_A 345 GLEKA 349 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=2.1e-18 Score=180.84 Aligned_cols=331 Identities=13% Similarity=0.044 Sum_probs=255.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
++..+..++..+...|++++|+..|+++++..+. +..++..++..+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3567889999999999999999999999998754 78889999999999999999999999999864 457788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCChhh
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTP----NAFAYSTC------------IEGLCMNGMLDLGYELLLKWEEADIPLSAFA 312 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 312 (831)
.+...|++++|++.|+++.+. .| +...+..+ ...+...|++++|...++++.+.. |.+..+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 156 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAEL 156 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHH
Confidence 999999999999999999976 34 34444444 467778888888888888887764 566777
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 003315 313 YTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQ 392 (831)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 392 (831)
+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...+++..+.... +...+..+
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~------ 228 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHY------ 228 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHH------
Confidence 888888888888888888888888776433 6777778888888888888888888887764322 11111110
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCChhh
Q 003315 393 KGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDV----VNYTTMICGYCLQGKLGD 468 (831)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~ 468 (831)
..+. .......+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++
T Consensus 229 -----------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 229 -----------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp -----------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHH
Confidence 0000 1122234467788999999999999998875322 22 234457788999999999
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003315 469 ALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCM 532 (831)
Q Consensus 469 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 532 (831)
|...+++..+..+. +..++..+...+...|++++|...++++.+.. +.+......+..+...
T Consensus 291 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 291 AIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 99999999887533 67889999999999999999999999999874 4456666666655543
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=1.2e-15 Score=172.92 Aligned_cols=408 Identities=14% Similarity=0.101 Sum_probs=301.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGF--VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
+|.--...+++|+..|.+.+|+++++++...+. ..+....+.++....+. +..+..+..+.+.+ .....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHH
Confidence 444556889999999999999999999984431 13556777788777777 44555555555432 123447
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
...+...|.+++|..+|++.. -.....+.+ +...+++++|.++.++. .++.+|..++.++.+.|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 778889999999999999863 122222333 22778899999998864 3578899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEF 406 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 406 (831)
++|.+.|.+. .|...|..++..+.+.|++++|++.|....+... +......++.+|++.+++++....
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~f---- 1189 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEF---- 1189 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHH----
Confidence 9999999664 3788889999999999999999999998877642 333333588888998888853333
Q ss_pred HHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcc
Q 003315 407 KDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDII 486 (831)
Q Consensus 407 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 486 (831)
.. .++...+..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. .+..
T Consensus 1190 I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1190 IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 22 345667778999999999999999999885 27889999999999999999999876 2668
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHh
Q 003315 487 TYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCK 563 (831)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~ 563 (831)
+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.....++.+ |..+...|++
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 888888999999999888876654 34456667788999999999999999999888877665 6667777765
Q ss_pred c--CCHHHHHHHHHHHHhCCC----CCCcccHHHHHHHHHhcCCHHHHHHHH-------------HHHHhCCCCCCHHHH
Q 003315 564 T--GHTKEAFQLFMRLSNQGV----LVKKSSCNKLITNLLILRDNNNALKLF-------------KTMITLNAEPSKSMY 624 (831)
Q Consensus 564 ~--g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~-------------~~~~~~~~~p~~~~~ 624 (831)
. ++..+++++|..-..... --+...|..+...|.+.|+++.|.... +..+. ...+...|
T Consensus 1327 y~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~ely 1404 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELY 1404 (1630)
T ss_pred CCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHH
Confidence 4 456666666654332211 013556888888999999999887322 22221 24567777
Q ss_pred HHHHHHHHhcC
Q 003315 625 DKLIGALCQAE 635 (831)
Q Consensus 625 ~~l~~~~~~~g 635 (831)
...+.-|...+
T Consensus 1405 ykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1405 YRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHhhC
Confidence 77777776444
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=3e-16 Score=171.64 Aligned_cols=352 Identities=9% Similarity=-0.006 Sum_probs=208.7
Q ss_pred CHHHHHHHHHHHHc----CCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCChh
Q 003315 116 NLCTYAAIVRILCC----CGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVS----VGMFD 187 (831)
Q Consensus 116 ~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 187 (831)
++..+..++..+.. .++.++|...+.+..+.. ++.++..|+..|.. .++++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------------------~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------------------YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHcCCCCCCCHH
Confidence 45555555555555 556666666666554430 23455566666666 66666
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHH
Q 003315 188 EGIDILFQINRRGFVWSICSCNYFMNQLVE----CGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK----KGSMQEA 259 (831)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 259 (831)
+|+..|+++.+.+ +..++..+...|.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|
T Consensus 97 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 97 QAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 6666666666543 44455556666655 556666666666665543 44555555555555 5566666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHhHHHH
Q 003315 260 VEVFLEMEKAGVTPNAFAYSTCIEGLCM----NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD----QNKLEKAEC 331 (831)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 331 (831)
++.|++..+.| +...+..+...|.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|.+
T Consensus 171 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 171 REWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 66666666543 45555555555555 566666666666666554 34555556666654 566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-----CChHHHHHH
Q 003315 332 VLLHMEKQGVVPDVYAYSALISGYCK----FGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQK-----GMASATIKQ 402 (831)
Q Consensus 332 ~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~ 402 (831)
.|++..+.| +...+..+...|.. .+++++|+..|++..+.| +...+..+...+... ++.++|+..
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 666666543 44455555555555 566666666666665543 333444455555544 566666666
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhhHHHHHHH
Q 003315 403 FLEFKDMGFFLNKVCYDVIVDSLCKLG---EVEKAMILFKEMKDRQIVPDVVNYTTMICGYCL----QGKLGDALDLFKE 475 (831)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 475 (831)
|+...+.+ +...+..+...|...| +.++|+++|++..+.+ +...+..+...|.. .+++++|...|++
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 66655543 3345555666665544 5667777777766542 45566666666666 6677777777777
Q ss_pred HHHcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 003315 476 MKEMGHKPDIITYNVLAGAFAQ----YGAVQKAFDLLNYMKRHG 515 (831)
Q Consensus 476 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 515 (831)
..+.+ +...+..+...|.. .++.++|...+++..+.+
T Consensus 393 A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 393 AAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 76653 34556666666666 677777777777776654
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=5.5e-16 Score=169.54 Aligned_cols=369 Identities=12% Similarity=0.024 Sum_probs=230.3
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHH
Q 003315 223 MALAVYQHLKRLGLSLNEYTYVIVIKALCK----KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM----NGMLDLG 294 (831)
Q Consensus 223 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a 294 (831)
.+...++...+. .++..+..+...|.. .+++++|++.|++..+.| +...+..|...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 345556665553 477778888888877 788888888888888764 56677777778877 7888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 003315 295 YELLLKWEEADIPLSAFAYTVVIRWFCD----QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCK----FGKINKALL 366 (831)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~ 366 (831)
...|++..+.+ ++..+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|++
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888888765 56677778888877 778888888888887764 56677777777776 677788888
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 367 LHHEMTSKGIKTNCGVLSVILKGLCQ----KGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
.|++..+.| +...+..+...|.. .++.++|++.|+...+.+ +...+..+...|..-
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g-------------- 232 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG-------------- 232 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC--------------
Confidence 877777653 34444444444444 445555555555544433 233344444444430
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCC
Q 003315 443 DRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQ----YGAVQKAFDLLNYMKRHGLEP 518 (831)
Q Consensus 443 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 518 (831)
....+++++|...|++..+.+ +...+..+...+.. .++.++|...+++..+.+
T Consensus 233 -----------------~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--- 289 (490)
T 2xm6_A 233 -----------------IGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--- 289 (490)
T ss_dssp -----------------SSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---
T ss_pred -----------------CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---
Confidence 000344444444444444332 22233333334433 445555555555554432
Q ss_pred CHHHHHHHHHHHHcC-----CCHHHHHHHHHHhhhCCCC-ChHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCcccH
Q 003315 519 NFVTHNMIIEGLCMG-----GRVEEAEAFLDGLKGKCLE-NYSAMINGYCKTG---HTKEAFQLFMRLSNQGVLVKKSSC 589 (831)
Q Consensus 519 ~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 589 (831)
+...+..+...|... ++.++|...+++..+.+.. .+..++..|...| ++++|+++|++..+.+ ++..+
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 366 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQ 366 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHH
Confidence 223333444444443 5555555555554443322 2444555555444 5667777777776663 56677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 003315 590 NKLITNLLI----LRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQ----AEEMEQAQLVFNVLVDKGL 652 (831)
Q Consensus 590 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 652 (831)
..+...+.. .+++++|...++++.+.+ +...+..+..+|.+ .++.++|...|+++.+.+.
T Consensus 367 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 367 FNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 777777777 778888888888887754 46677778888877 7888888888888887754
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=2.1e-17 Score=171.01 Aligned_cols=285 Identities=10% Similarity=-0.004 Sum_probs=141.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIE 283 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 283 (831)
+...+..++..+...|++++|..+|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33444445555555555555555555555432 2333444444455555555555555555555432 223444445555
Q ss_pred HHHhcC-ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003315 284 GLCMNG-MLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKIN 362 (831)
Q Consensus 284 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 362 (831)
.+...| ++++|...++++.+.+ |.+...+..++..+...|++++|.+.++++.+..+. +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 555555 5555555555555443 334445555555555555555555555555554322 2334444555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 363 KALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
+|...+++..+.... +...+..+...+...|++++|...+++..
T Consensus 177 ~A~~~~~~al~~~~~------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 177 LAERFFSQALSIAPE------------------------------------DPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHTTCTT------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC------------------------------------ChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 555555555543211 22333334444444444444444444433
Q ss_pred hCC--------CCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 443 DRQ--------IVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRH 514 (831)
Q Consensus 443 ~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 514 (831)
+.. .+.....+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|.+.++++.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 210 0122345555555566666666666666665554322 4455555566666666666666666665554
Q ss_pred CCCCCHHHHHHHHHHH
Q 003315 515 GLEPNFVTHNMIIEGL 530 (831)
Q Consensus 515 ~~~~~~~~~~~l~~~~ 530 (831)
. +.+...+..+..++
T Consensus 300 ~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 300 R-RDDTFSVTMLGHCI 314 (330)
T ss_dssp C-SCCHHHHHHHHHHH
T ss_pred C-CCchHHHHHHHHHH
Confidence 2 33444555555444
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2.5e-16 Score=174.14 Aligned_cols=428 Identities=11% Similarity=0.014 Sum_probs=302.3
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003315 228 YQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIP 307 (831)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (831)
|++.++.. |-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 55555543 457889999998 478999999999999999863 4567789999999999999999999999999874
Q ss_pred CChhhHHHHHHHH-HhcCCHhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHH
Q 003315 308 LSAFAYTVVIRWF-CDQNKLEKAEC----VLLHMEKQ-GVVP-DVYAYSALISGYCK---------FGKINKALLLHHEM 371 (831)
Q Consensus 308 ~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~p-~~~~~~~li~~~~~---------~~~~~~A~~~~~~~ 371 (831)
|+...|..++... ...|++++|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 4777888777644 35677777765 77766543 4443 56778877776654 68899999999998
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH------hCC
Q 003315 372 TSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK------DRQ 445 (831)
Q Consensus 372 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~ 445 (831)
++.........+..........+ ..+...++. .+.++++.|..+++++. +..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~--------------------~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGIN--------------------IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHC--------------------HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhc--------------------hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 87311111122222111110011 001111111 12345666766666522 211
Q ss_pred ---CCCC--------hhhHHHHHHHHHcc----CCh----hhHHHHHHHHHHcCCCCCcchHHHHHHHHHh-------cC
Q 003315 446 ---IVPD--------VVNYTTMICGYCLQ----GKL----GDALDLFKEMKEMGHKPDIITYNVLAGAFAQ-------YG 499 (831)
Q Consensus 446 ---~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g 499 (831)
++|+ ...|...+...... ++. +.+..+|+++....+. +...|...+..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhcc
Confidence 2333 23454444332221 222 3677889988876433 66778777777765 68
Q ss_pred CHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC----hHHHHHHHHhcCCHH
Q 003315 500 AVQ-------KAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN----YSAMINGYCKTGHTK 568 (831)
Q Consensus 500 ~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~ 568 (831)
+++ +|..++++.++.-.+.+...+..++..+.+.|++++|..+|+++...+|.. |..++..+.+.|+++
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHH
Confidence 876 899999999873235568888889999999999999999999999887754 666777778899999
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003315 569 EAFQLFMRLSNQGVLVKKSSCNKLITN-LLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVL 647 (831)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 647 (831)
+|.++|+++.+..+. +...+...+.. +...|+.++|..+|+++++.. +.+...|..++..+.+.|+.++|+.+|+++
T Consensus 374 ~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 374 SGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 999999999987432 33333333322 335899999999999998864 446888999999999999999999999999
Q ss_pred HHCCCC-C--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 648 VDKGLT-P--HLVTYTMMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 648 ~~~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
+..+.. | ....|...+....+.|+.+.+..+++++.+.
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 987432 2 2447888898888999999999999999874
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=2e-17 Score=171.20 Aligned_cols=293 Identities=11% Similarity=0.005 Sum_probs=217.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
++..+..++..+...|++++|+..|+++++.++. +...+..++..+...|++++|...++++.+.. +.+...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3446778899999999999999999999988754 67778888899999999999999999999864 457788999999
Q ss_pred HHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 249 ALCKKG-SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 249 ~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
.+...| ++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 999999 9999999999999864 4457789999999999999999999999999875 556778888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFK 407 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 407 (831)
+|.+.++++.+..+. +...+..+...+.+.|++++|...+++..+.......
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------------- 228 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN--------------------------- 228 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC---------------------------
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc---------------------------
Confidence 999999999987544 7888999999999999999999999998763210000
Q ss_pred HCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcch
Q 003315 408 DMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIIT 487 (831)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 487 (831)
....+....++..+..++...|++++|...+++..+... .+...+..+...+...|++++|.+.++++.+..+. +...
T Consensus 229 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~ 306 (330)
T 3hym_B 229 EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFS 306 (330)
T ss_dssp SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHH
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHH
Confidence 000011233444455555555555555555555544321 13444555555555555555555555555543221 3334
Q ss_pred HHHHHHHH
Q 003315 488 YNVLAGAF 495 (831)
Q Consensus 488 ~~~l~~~~ 495 (831)
+..+..++
T Consensus 307 ~~~l~~~~ 314 (330)
T 3hym_B 307 VTMLGHCI 314 (330)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=3.8e-16 Score=172.72 Aligned_cols=215 Identities=11% Similarity=0.070 Sum_probs=141.6
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHc-------cCChh-------hHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 003315 433 KAMILFKEMKDRQIVPDVVNYTTMICGYCL-------QGKLG-------DALDLFKEMKEMGHKPDIITYNVLAGAFAQY 498 (831)
Q Consensus 433 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 498 (831)
.+..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5556666655431 2255566666665554 56665 6777777776521122455666667777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHH---HH-HHhcCCHHHHHHH
Q 003315 499 GAVQKAFDLLNYMKRHGLEPN-FVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMI---NG-YCKTGHTKEAFQL 573 (831)
Q Consensus 499 g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~-~~~~g~~~~A~~~ 573 (831)
|++++|..+++++++.. +.+ ..++...+..+.+.|++++|.++|++..+..+..+...+ .. +...|++++|..+
T Consensus 335 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp TCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 77777777777777642 222 246666666667777777777777777766555432211 11 2357788888888
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 574 FMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNA-EP--SKSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 650 (831)
|++..+..+. ++..+..++..+.+.|+.++|..+|++++..+. .| ...+|...+......|+.+.+..+++++.+.
T Consensus 414 ~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 414 FELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8877776543 567777788888888888888888888887642 22 2457777788788889999999888888875
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=5.6e-17 Score=170.74 Aligned_cols=259 Identities=10% Similarity=-0.020 Sum_probs=163.5
Q ss_pred HHHHcCChhHHHH-HHHHHHHcCCC---cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 179 AYVSVGMFDEGID-ILFQINRRGFV---WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 179 ~~~~~~~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
++...|++++|+. .|.++.+..+. .+...+..++..+.+.|++++|...|+++++.. +.+...+..+...+.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3455688888888 88876655432 135567888888999999999999999988764 457778888889999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH---------------HHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVV---------------IRW 319 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------~~~ 319 (831)
++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.. |.+...+..+ +..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999999988764 4567788888889999999999999999988875 3333333211 222
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH
Q 003315 320 FCDQNKLEKAECVLLHMEKQGVVP-DVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASA 398 (831)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 398 (831)
+...|++++|...|+++.+..+.. +..++..+...|.+.|++++|+..++++...... +...+..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHH
Confidence 336777777777777777653321 4666777777777777777777777777654221 33444445555555555555
Q ss_pred HHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 399 TIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
|+..++.+.+..+ .+...+..+..++.+.|++++|...|+++.
T Consensus 270 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 270 AVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555444321 133444445555555555555555554443
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=3.6e-17 Score=172.23 Aligned_cols=257 Identities=9% Similarity=-0.091 Sum_probs=160.2
Q ss_pred ccCChhHHHH-HHHHHHhCCC---CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcch
Q 003315 94 LRKEPKIALS-FFEQLKRSGF---SHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLL 169 (831)
Q Consensus 94 ~~~~~~~A~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (831)
..|+++.|++ .|+.+..... ..+...+..++..+...|++++|...+.++++..|. +
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------------------~ 97 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-------------------H 97 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-------------------C
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------------C
Confidence 3467777777 7776543211 113455667777777777888887777777766433 4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH----
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI---- 245 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---- 245 (831)
..++..++.+|...|++++|+..|+++++.++. +..++..++.++...|++++|...|+++.+.. +.+...+..
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 175 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG 175 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC-----
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 456777777777788888888888777776633 66677777777777788888888777777653 222222221
Q ss_pred -----------HHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 003315 246 -----------VIKALCKKGSMQEAVEVFLEMEKAGVT-PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAY 313 (831)
Q Consensus 246 -----------l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (831)
.+..+...|++++|+..|+++.+.... ++..++..+...+...|++++|...++++.+.. |.+..++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 254 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 254 (368)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 122233667777777777777665311 135666667777777777777777777766653 4456666
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
..++..+...|++++|...|+++.+..+. +...+..+..+|.+.|++++|...|+++.+
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777777776665322 556666677777777777777777766654
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=6.3e-16 Score=168.82 Aligned_cols=329 Identities=11% Similarity=-0.066 Sum_probs=202.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--------CCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC-----
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRR--------GFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLG----- 235 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----- 235 (831)
....|+.|+..+...|++++|++.|+++++. ..+....+|+.+..+|...|++++|...|++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4568899999999999999999999987653 112245578889999999999999999998876421
Q ss_pred --CCCChhhHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCC
Q 003315 236 --LSLNEYTYVIVIKALCKK--GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG---LCMNGMLDLGYELLLKWEEADIPL 308 (831)
Q Consensus 236 --~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 308 (831)
......++..+..++.+. +++++|++.|+++.+.. +.+...+..+..+ +...++.++|++.+++.++.+ |.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 012345666666666554 46899999999998763 2344455554444 445678888999998888875 55
Q ss_pred ChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 003315 309 SAFAYTVVIRWFCD----QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLS 384 (831)
Q Consensus 309 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 384 (831)
+..++..+...+.. .|++++|.+.+++.....+. +...+..+...|.+.|++++|+..+++..+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 66777666655544 46778899999888876544 6778888888999999999999999888775322 222222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 003315 385 VILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQG 464 (831)
Q Consensus 385 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 464 (831)
.+..+|...+... .... ...........+
T Consensus 286 -----------------------------------~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~ 314 (472)
T 4g1t_A 286 -----------------------------------QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLE 314 (472)
T ss_dssp -----------------------------------HHHHHHHHHHHHH---------HHC-------------CHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHh
Confidence 2222221110000 0000 000000011112
Q ss_pred ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHcCCCHHHHHH
Q 003315 465 KLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFV--THNMIIE-GLCMGGRVEEAEA 541 (831)
Q Consensus 465 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~ 541 (831)
..++|...+++..+..+. +..++..+...+...|++++|.+.|++.++....+... .+..+.. .....|+.++|+.
T Consensus 315 ~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 315 LIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 345666666666655432 55566667777777777777777777776654322211 1122211 1234556666666
Q ss_pred HHHHhhhCCCCC
Q 003315 542 FLDGLKGKCLEN 553 (831)
Q Consensus 542 ~~~~~~~~~~~~ 553 (831)
.+++.....|.+
T Consensus 394 ~y~kal~i~~~~ 405 (472)
T 4g1t_A 394 HFIEGVKINQKS 405 (472)
T ss_dssp HHHHHHHSCCCC
T ss_pred HHHHHHhcCccc
Confidence 666555555544
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=9.4e-17 Score=168.70 Aligned_cols=233 Identities=11% Similarity=-0.076 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
+...+..++..+.+.|++++|+..|+++++..+. +..++..++.++...|++++|+..|++..+.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3446788999999999999999999999988754 78889999999999999999999999998864 456889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--ChhhHHH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNA-----------FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPL--SAFAYTV 315 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 315 (831)
.|...|++++|++.|+++.+.. |+. ..+..+...+...|++++|...++++.+.+ |. +..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHH
Confidence 9999999999999999998753 332 222334677888888888888888888874 44 6778888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 003315 316 VIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGM 395 (831)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 395 (831)
++..+...|++++|.+.|+++.+..+. +..+|..+..+|.+.|++++|+..|++.++.... +..++..+...+...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 888888888888888888888876443 6778888888888888888888888888775322 34455555555555555
Q ss_pred hHHHHHHHHHHHH
Q 003315 396 ASATIKQFLEFKD 408 (831)
Q Consensus 396 ~~~a~~~~~~~~~ 408 (831)
+++|...|+++.+
T Consensus 297 ~~~A~~~~~~al~ 309 (365)
T 4eqf_A 297 YREAVSNFLTALS 309 (365)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=9.6e-17 Score=168.63 Aligned_cols=236 Identities=7% Similarity=-0.105 Sum_probs=190.4
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
+...+...+..+...|++++|...+.++++..|. +..++..++..|...|++++|+..|++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-------------------DAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-------------------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455778888888899999999999888887543 456788899999999999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhH----------HHHHHHHHhcCChHHHHHHHHH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTY----------VIVIKALCKKGSMQEAVEVFLE 265 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~g~~~~A~~~~~~ 265 (831)
+++.++. +..++..++.++...|++++|...|+++.+.. +.+...+ ..+...+.+.|++++|++.|++
T Consensus 125 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 125 CLELQPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred HHhcCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8887644 67888889999999999999999999888753 1222223 3447788899999999999999
Q ss_pred HHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 003315 266 MEKAGVT-PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPD 344 (831)
Q Consensus 266 m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 344 (831)
+.+.... ++..++..+...+...|++++|...++++.+.. |.+..++..++..|...|++++|...|+++.+..+. +
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~ 280 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-F 280 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-c
Confidence 9886411 157889999999999999999999999999875 667889999999999999999999999999887443 6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 345 VYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 345 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
..++..+..+|.+.|++++|...|+++++.
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888999999999999999999999998764
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=2e-16 Score=163.28 Aligned_cols=233 Identities=10% Similarity=-0.057 Sum_probs=169.3
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
+...+..++..+...|++++|+..|+++.+..+. +..++..++.++...|++++|...|+++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 4456778899999999999999999999988754 78888899999999999999999999998864 457788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTC--------------IE-GLCMNGMLDLGYELLLKWEEADIPLSAFAY 313 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (831)
.+...|++++|++.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+..++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999999998863 2222333333 22 3666777788888888877764 5567777
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQK 393 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 393 (831)
..++..+...|++++|.+.++++.+..+. +...+..+...+...|++++|...++++.+.... +...+..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 77788888888888888888877766433 5667777777777778888887777777664321 333444444444444
Q ss_pred CChHHHHHHHHHHH
Q 003315 394 GMASATIKQFLEFK 407 (831)
Q Consensus 394 ~~~~~a~~~~~~~~ 407 (831)
|++++|.+.++.+.
T Consensus 254 g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 254 SQYDLAAKQLVRAI 267 (327)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444443
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=4.4e-16 Score=158.71 Aligned_cols=345 Identities=12% Similarity=0.085 Sum_probs=129.2
Q ss_pred HcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003315 182 SVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVE 261 (831)
Q Consensus 182 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (831)
+.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4566677777766651 223566677777777777777777643 2455566666766667777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 003315 262 VFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV 341 (831)
Q Consensus 262 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 341 (831)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66655543 3445566666777777777766665553 245556777777777777777777777655
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHH
Q 003315 342 VPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVI 421 (831)
Q Consensus 342 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 421 (831)
..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+ ...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 24666777777777777777777666 14566666777777777777664433321 1223334457
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc--CChhhHHHHHHHHHHcCCCC------CcchHHHHHH
Q 003315 422 VDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQ--GKLGDALDLFKEMKEMGHKP------DIITYNVLAG 493 (831)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~ 493 (831)
+..|.+.|.+++|..+++...... +.....|+-+.-.|++- ++..+.++.|.. ..+++| +...|.-++.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence 777778888888888887776543 33555666666666543 233334443331 111222 4566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHH
Q 003315 494 AFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQL 573 (831)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 573 (831)
.|...++++.|... |.++ +++..-...+.....+..+.+--.+...=.....|...+.|+.++...=+..++..+
T Consensus 291 ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~ 365 (449)
T 1b89_A 291 LYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNY 365 (449)
T ss_dssp HHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHH
T ss_pred HHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHH
Confidence 77777777776653 3332 233222233333334444444333333333344444555555555554455555554
Q ss_pred HH
Q 003315 574 FM 575 (831)
Q Consensus 574 ~~ 575 (831)
|+
T Consensus 366 ~~ 367 (449)
T 1b89_A 366 FS 367 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=4.2e-16 Score=160.94 Aligned_cols=264 Identities=5% Similarity=-0.142 Sum_probs=190.6
Q ss_pred ChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 003315 83 NTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALC 162 (831)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (831)
......+..+...|+++.|+.+|+.+.+.. +.++..+..++.++...|++++|...+.++++..|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------- 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------------- 87 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-------------
Confidence 444556677778899999999999987553 337888888999999999999999999988887443
Q ss_pred cCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHH--------------HH-HHHHcCChhHHHHH
Q 003315 163 GEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYF--------------MN-QLVECGKVDMALAV 227 (831)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~ 227 (831)
+..++..++..|...|++++|+..++++.+..+. +...+..+ .. .+...|++++|...
T Consensus 88 ------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 88 ------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 4567888899999999999999999998887644 33334333 22 35566777788888
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003315 228 YQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIP 307 (831)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (831)
++++.+.. +.+...+..+...+.+.|++++|++.++++.+.. +.+..++..+...+...|++++|...++++.+.. |
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 237 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-P 237 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 87777654 3466677777777777888888888887777653 3456677777777777777777777777777664 4
Q ss_pred CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003315 308 LSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVP-----------DVYAYSALISGYCKFGKINKALLLHHE 370 (831)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~~~~~~A~~~~~~ 370 (831)
.+..++..++..+...|++++|.+.|+++.+..+.. +...|..+..++.+.|++++|...+++
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 566777777777777777777777777776643221 355667777777777777777776654
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=5.8e-16 Score=157.84 Aligned_cols=282 Identities=12% Similarity=0.082 Sum_probs=86.2
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003315 216 VECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGY 295 (831)
Q Consensus 216 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 295 (831)
-+.|+.++|.++++++ +++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3566777777777775 23347777888888888888888877542 45567777777777777777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 296 ELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
.+++..++. .+++.+.+.++.+|.+.|++++++++++ .|+..+|..++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 766665553 3345666777777777777777766663 245567777777777777777777777654
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 003315 376 IKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTT 455 (831)
Q Consensus 376 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 455 (831)
..| ..++.++.+.|++++|.+.++++. ++.+|..
T Consensus 149 -----~n~-----------------------------------~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~ 182 (449)
T 1b89_A 149 -----SNF-----------------------------------GRLASTLVHLGEYQAAVDGARKAN------STRTWKE 182 (449)
T ss_dssp -----TCH-----------------------------------HHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHH
T ss_pred -----hhH-----------------------------------HHHHHHHHHhccHHHHHHHHHHcC------CchhHHH
Confidence 134 445555555555555555555441 4445555
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--
Q 003315 456 MICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMG-- 533 (831)
Q Consensus 456 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 533 (831)
++.+|+..|+++.|......+. ..+.....++..|.+.|++++|..+++..+... +-....++.+...|++-
T Consensus 183 v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p 256 (449)
T 1b89_A 183 VCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP 256 (449)
T ss_dssp HHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCH
Confidence 5555555555555533332211 122223334555555555555555555555433 33344444444444432
Q ss_pred CCHHHHHHHHHHhhh--------CCCCChHHHHHHHHhcCCHHHHHHHH
Q 003315 534 GRVEEAEAFLDGLKG--------KCLENYSAMINGYCKTGHTKEAFQLF 574 (831)
Q Consensus 534 g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~ 574 (831)
++..+..+.|..-.. ..+..|..++..|.+.++++.|....
T Consensus 257 ~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 257 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 233333333322111 13444777777777777777776643
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=7e-15 Score=160.45 Aligned_cols=389 Identities=12% Similarity=-0.042 Sum_probs=227.8
Q ss_pred ChHHHHHHHHhccCChhHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhH
Q 003315 83 NTREVVEKLYSLRKEPKIALSFFEQLKR--------SGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEA 154 (831)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 154 (831)
+....++.++...|+++.|++.|+++.+ ...+....+|..++.++...|++++|...+.++++..+.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~----- 126 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK----- 126 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh-----
Confidence 3445677888889999999999998752 112335778999999999999999999999887765321
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHc--CChhHHHHHHHHHHHcCCCcChhhHHHHHHH---HHHcCChhHHHHHHH
Q 003315 155 TDLIEALCGEGSTLLTRLSDAMIKAYVSV--GMFDEGIDILFQINRRGFVWSICSCNYFMNQ---LVECGKVDMALAVYQ 229 (831)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~ 229 (831)
.........+.++...+.++... +++++|+..|+++++.++. ++..+..+..+ +...++.++|++.|+
T Consensus 127 ------~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 127 ------FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp ------SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred ------cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 11111223456677777666654 5699999999999998754 66666666655 345678889999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003315 230 HLKRLGLSLNEYTYVIVIKALCK----KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEAD 305 (831)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (831)
+.++.. +.+...+..+...+.. .|++++|.+.+++..+.. +.+..++..+...|...|++++|...++++.+..
T Consensus 200 ~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 200 QAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp HHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 988764 4456666666655544 467889999999988764 4567788899999999999999999999999875
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 003315 306 IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSV 385 (831)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 385 (831)
|.+..++..+...|...+....+ .. ...........+.++.|...+++..+.+.. +...+..
T Consensus 278 -p~~~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 339 (472)
T 4g1t_A 278 -PNNAYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSI 339 (472)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhh
Confidence 66777888777766432111000 00 000000000111234444444444433211 2233444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCH--hhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 003315 386 ILKGLCQKGMASATIKQFLEFKDMGFFLNK--VCYDVIVD-SLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCL 462 (831)
Q Consensus 386 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 462 (831)
+...+...|++++|+..|++.......+.. ..+..+.. .+...|+.++|+..|++..+. .|+.....
T Consensus 340 lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~-------- 409 (472)
T 4g1t_A 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE-------- 409 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH--------
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH--------
Confidence 444555555555555555554443322211 11222222 223556677777777666653 22322111
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003315 463 QGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHG 515 (831)
Q Consensus 463 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 515 (831)
+....+.+++++....++ .+..+|..+..++...|++++|++.+++.++.+
T Consensus 410 -~~~~~l~~~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 410 -KMKDKLQKIAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp -HHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred -HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 112333445555555443 256677777777777777777777777777643
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=3.6e-15 Score=149.74 Aligned_cols=248 Identities=11% Similarity=-0.019 Sum_probs=155.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHH
Q 003315 95 RKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSD 174 (831)
Q Consensus 95 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (831)
.|+++.|+..++.+...+.....+....+++.+...|+++.|...+.. . .++...++.
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-------------------~~~~~~a~~ 69 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-------------------SAPELQAVR 69 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-------------------SCHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-------------------CChhHHHHH
Confidence 467777777766544331111123444556777777777766654322 0 122445666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCC-CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGF-VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
.++..+...++.++|+..+++++..+. +.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC
Confidence 777777777777777777777766542 22455566666777777777777777765 35666777777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHH
Q 003315 254 GSMQEAVEVFLEMEKAGVTPNAFAY---STCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAE 330 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 330 (831)
|++++|.+.|+++.+. .|+.... ...+..+...|++++|..+|+++.+.. |.++.+++.++.++.+.|++++|+
T Consensus 144 g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777765 2443211 112233344567777777777777663 566777777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhC
Q 003315 331 CVLLHMEKQGVVPDVYAYSALISGYCKFGKINK-ALLLHHEMTSK 374 (831)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~~ 374 (831)
..|+++.+..+. +..++..++..+...|+.++ +.++++++.+.
T Consensus 221 ~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 221 GVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 777777765433 66667777777777777654 45666666654
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=5.6e-15 Score=148.32 Aligned_cols=253 Identities=13% Similarity=0.062 Sum_probs=154.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 003315 178 KAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQ 257 (831)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (831)
+-....|++..|+..++++....+.........+.++|...|+++.|+..++. . .+|+..++..+...+...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 34456778888888777655543332234445567777888888777765543 1 2456667777777777777788
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 003315 258 EAVEVFLEMEKAGVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHM 336 (831)
Q Consensus 258 ~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 336 (831)
+|++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888777665434 344555666777777777777777766 456677777777777777777777777777
Q ss_pred HHCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 003315 337 EKQGVVPDVYAY---SALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFL 413 (831)
Q Consensus 337 ~~~~~~p~~~~~---~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (831)
.+.. |+.... ...+..+...|++++|..+|+++.+... .
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p------------------------------------~ 198 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS------------------------------------P 198 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC------------------------------------C
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC------------------------------------C
Confidence 7653 332211 1223334445667777777777666422 2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhh-HHHHHHHHHHc
Q 003315 414 NKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGD-ALDLFKEMKEM 479 (831)
Q Consensus 414 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~ 479 (831)
+...++.+..++.+.|++++|...|++...... -+..++..++..+...|+.++ +.++++++.+.
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 444555555555555666666666655544322 244455555555555555543 34555555554
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=174.38 Aligned_cols=115 Identities=12% Similarity=0.143 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHH
Q 003315 657 VTYTMMIHGYCKINCLREARDVFNDMKQ---RGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMK 733 (831)
Q Consensus 657 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 733 (831)
.+||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||+++++ .|..++|.++|++|.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck---------------~G~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR---------------QGAFKELVYVLFMVK 192 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH---------------HTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh---------------CCCHHHHHHHHHHHH
Confidence 3455555555555555555555544432 2445555555555555544 333555555555555
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003315 734 EMGIRPDVISYTVLIAKLCNTQNL-EDGITVFNEISDRGLEPDTVTYTALLCGY 786 (831)
Q Consensus 734 ~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~pd~~~~~~l~~~~ 786 (831)
+.|+.||..|||++|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++
T Consensus 193 ~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 555555555555555555555543 45555555555555555555555555433
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=5.4e-15 Score=141.67 Aligned_cols=197 Identities=13% Similarity=0.037 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
+.++..++..+.+.|++++|+..|+++++.++. +..++..+..++.+.|++++|+..|++.++.. |.+...+..+...
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345555666666666666666666666655533 55555666666666666666666666655543 3344555556666
Q ss_pred HHhc-----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 003315 250 LCKK-----------GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIR 318 (831)
Q Consensus 250 ~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (831)
+.+. |++++|+..|++..+.. +.+...+..+..++...|++++|+..|++.++.+ .++..+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 6666 66666666666666542 2345556666666666666666666666666655 45666666666
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 319 WFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMT 372 (831)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 372 (831)
.+...|++++|...|++..+..+. +...+..+..++.+.|++++|+..+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 666667777777777666665433 55666666666666777777766666543
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=7.8e-15 Score=140.57 Aligned_cols=201 Identities=17% Similarity=0.070 Sum_probs=165.3
Q ss_pred CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 202 VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTC 281 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 281 (831)
+++...+..+...+.+.|++++|...|++.++.. |.++..+..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3567788899999999999999999999999865 5678899999999999999999999999999874 4467788999
Q ss_pred HHHHHhc-----------CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 003315 282 IEGLCMN-----------GMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSA 350 (831)
Q Consensus 282 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 350 (831)
..++... |++++|...+++.++.+ |.+...+..+...+...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999999986 6678999999999999999999999999999987 58899999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003315 351 LISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKD 408 (831)
Q Consensus 351 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 408 (831)
+..+|...|++++|+..|++.++..+. +...+..+...+...|+.++|+..+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999999999999999986433 567788888999999999999999987654
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=9.7e-15 Score=156.85 Aligned_cols=280 Identities=12% Similarity=0.029 Sum_probs=161.8
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh---hhHHHHHHHHHHhcCCCchhHHHHHHHHhcC
Q 003315 88 VEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQ---KKLESMLLELVRKKTDANFEATDLIEALCGE 164 (831)
Q Consensus 88 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (831)
+...+..+|+++.|+..|+.+.+.| ++..+..++.++...|.. ++|...|++.++.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------------------ 67 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------------------ 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------------------
Confidence 4566667789999999999888664 445566677777777777 7888887776644
Q ss_pred CCcchHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhH---HHHHHHHHHhcCC
Q 003315 165 GSTLLTRLSDAMIKAYVSVG-----MFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDM---ALAVYQHLKRLGL 236 (831)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~ 236 (831)
++.++..++..+...+ ++++|+..|+++.+.|. ..++..+...|...+..++ +.+.+......|
T Consensus 68 ----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g- 139 (452)
T 3e4b_A 68 ----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG- 139 (452)
T ss_dssp -------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-
T ss_pred ----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-
Confidence 2345667777555555 77889999998888663 3367778888877665443 444444444433
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCChhhH
Q 003315 237 SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNG---MLDLGYELLLKWEEADIPLSAFAY 313 (831)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 313 (831)
++..+..+...|...+.++++....+...+.-...+...+..+...|...| +.++|+..|++..+.+ +++...+
T Consensus 140 --~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~ 216 (452)
T 3e4b_A 140 --YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV 216 (452)
T ss_dssp --CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH
T ss_pred --CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH
Confidence 456677777778777755555444333322111223336777777787788 7888888888888876 5555555
Q ss_pred HHHHHHHHhc----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 003315 314 TVVIRWFCDQ----NKLEKAECVLLHMEKQGVVPDVYAYSALISG-Y--CKFGKINKALLLHHEMTSKGIKTNCGVLSVI 386 (831)
Q Consensus 314 ~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 386 (831)
..+...|... +++++|.+.|++.. .| +...+..|... + ...+++++|+..|++..+.| +......+
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~L 289 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLL 289 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 6677776554 67888888888877 32 45556666665 3 35677788888887777665 33344444
Q ss_pred HHHHHhcC-----ChHHHHHHHHHHH
Q 003315 387 LKGLCQKG-----MASATIKQFLEFK 407 (831)
Q Consensus 387 l~~~~~~~-----~~~~a~~~~~~~~ 407 (831)
...|. .| +.++|+..|+...
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 44443 22 4444444444443
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=4.4e-16 Score=171.16 Aligned_cols=123 Identities=14% Similarity=0.154 Sum_probs=110.7
Q ss_pred CCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003315 687 ITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMK---EMGIRPDVISYTVLIAKLCNTQNLEDGITV 763 (831)
Q Consensus 687 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~---~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 763 (831)
...-..||+++|++|++ .|++++|.++|++|. ..|+.||..+||+||.+||+.|++++|.++
T Consensus 123 ~~~~~~TynaLIdglcK---------------~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~L 187 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLL---------------TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYV 187 (1134)
T ss_dssp CCHHHHHHHHHHHHHHH---------------HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh---------------CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHH
Confidence 44457899999999998 567999999998886 458999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003315 764 FNEISDRGLEPDTVTYTALLCGYLAKGD-LDRAIALVDEMSVKGIQGDDYTKSSLERGIEKA 824 (831)
Q Consensus 764 ~~~~~~~g~~pd~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~ 824 (831)
|++|.+.|+.||.+||++|+.++++.|+ .++|.++|++|.++|+.||..+|+.++.+..+.
T Consensus 188 f~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999999999999999999999998 589999999999999999999999555444443
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=4.4e-14 Score=151.70 Aligned_cols=346 Identities=13% Similarity=0.066 Sum_probs=165.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 211 FMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSM---QEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM 287 (831)
Q Consensus 211 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 287 (831)
+...+.+.|++++|.+.|++..+.| ++..+..|...|...|+. ++|++.|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5666777788888888888877654 444555566666667777 7888888777643 44555566664444
Q ss_pred cC-----ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003315 288 NG-----MLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK---AECVLLHMEKQGVVPDVYAYSALISGYCKFG 359 (831)
Q Consensus 288 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 359 (831)
.+ ++++|...|++..+.+. +..+..|...|...+..++ +.+.+......| +...+..|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 44 66777777777777652 2366666666666554433 333333333332 3334555566666666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC---CHHHHHH
Q 003315 360 KINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLG---EVEKAMI 436 (831)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~ 436 (831)
.++++......+.+.-.. .++..+..|..+|...| +.++|++
T Consensus 156 ~~~~~~~~a~~~~~~a~~-----------------------------------~~~~a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALN-----------------------------------TTDICYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp CGGGGHHHHHHHHHHHTT-----------------------------------TCTTHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHc-----------------------------------CCHHHHHHHHHHHHHcCCcccHHHHHH
Confidence 544444332222211111 12224445555555555 5666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcc----CChhhHHHHHHHHHHcCCCCCcchHHHHHHH-H--HhcCCHHHHHHHHH
Q 003315 437 LFKEMKDRQIVPDVVNYTTMICGYCLQ----GKLGDALDLFKEMKEMGHKPDIITYNVLAGA-F--AQYGAVQKAFDLLN 509 (831)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~ 509 (831)
+|++..+.+.. +...+..+...|... +++++|...|++.. . -+...+..+... + ...+++++|...++
T Consensus 201 ~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 201 QMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 66666555432 333334444444333 46666666666655 2 234444444444 2 34566666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHhhhCCCCChHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 003315 510 YMKRHGLEPNFVTHNMIIEGLCMGG-----RVEEAEAFLDGLKGKCLENYSAMINGYCK----TGHTKEAFQLFMRLSNQ 580 (831)
Q Consensus 510 ~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 580 (831)
+..+.| +......+..+|. .| +.++|..+|++....++..+..|+..|.. ..++++|..+|++..+.
T Consensus 276 ~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 276 NGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 666554 3444445554554 33 56666666665551122224444444443 22555566666555554
Q ss_pred CCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 003315 581 GVLVKKSSCNKLITNLLI----LRDNNNALKLFKTMITLN 616 (831)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 616 (831)
| ++.....+...|.. ..+.++|..+++.+.+.|
T Consensus 352 g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 352 G---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp T---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred C---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 4 23334444444432 234445555555444433
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.3e-14 Score=138.82 Aligned_cols=226 Identities=12% Similarity=0.050 Sum_probs=180.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CC----hhh
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS--LN----EYT 242 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~ 242 (831)
...++..++..+...|++++|+..|+++++.. .+..++..++.++...|++++|...|++..+.... ++ ...
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 34578899999999999999999999999887 58889999999999999999999999998864311 11 578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 003315 243 YVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD 322 (831)
Q Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (831)
+..+...+...|++++|++.|+++.+. .|+. ..+...|++++|...++++.... +.+...+..++..+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 889999999999999999999999886 4553 34666788899999999988874 5567788889999999
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 003315 323 QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQ 402 (831)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 402 (831)
.|++++|...|+++.+..+. +...+..+...+.+.|++++|+..+++.++.... +...+..+...+...|+.++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999887544 6788888899999999999999999988875422 344555555555555555555555
Q ss_pred HHHHHH
Q 003315 403 FLEFKD 408 (831)
Q Consensus 403 ~~~~~~ 408 (831)
++...+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=1.8e-13 Score=141.87 Aligned_cols=233 Identities=12% Similarity=0.011 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC-hhHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGM-FDEGIDILFQ 195 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~ 195 (831)
..+|..+..++...|++++|+..+.+++...|. +..+|..++.++...|+ +++|+..|++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-------------------~~~a~~~~g~~l~~~g~d~~eAl~~~~~ 157 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-------------------NYTVWHFRRVLLKSLQKDLHEEMNYITA 157 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-------------------CHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 556677777777788888888888888777554 55677788888888886 8888888888
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 275 (831)
+++.++. +..+|..+..++...|++++|+..|+++++.. +.+...|..+..++.+.|++++|++.|+++++.. +.+.
T Consensus 158 al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~ 234 (382)
T 2h6f_A 158 IIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNN 234 (382)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCH
T ss_pred HHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCH
Confidence 8877755 77778888888888888888888888887764 4567778778888888888888888888887764 3456
Q ss_pred HHHHHHHHHHHh-cCChhHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHhHHHHHHHHHHHCCCCCCHHH
Q 003315 276 FAYSTCIEGLCM-NGMLDLG-----YELLLKWEEADIPLSAFAYTVVIRWFCDQN--KLEKAECVLLHMEKQGVVPDVYA 347 (831)
Q Consensus 276 ~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~ 347 (831)
..|+.+..++.. .|..++| +..+++.++.+ |.+...|..+...+...| ++++|.+.+.++ +.. ..+...
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~a 311 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYL 311 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHH
Confidence 677777777777 5554666 46777777764 556777777777777766 577777777776 332 225666
Q ss_pred HHHHHHHHHhcC---------ChHHHHHHHHHH-HhC
Q 003315 348 YSALISGYCKFG---------KINKALLLHHEM-TSK 374 (831)
Q Consensus 348 ~~~li~~~~~~~---------~~~~A~~~~~~~-~~~ 374 (831)
+..++.+|.+.| .+++|+++|+++ .+.
T Consensus 312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 312 IAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 777777777653 247777777776 443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=2.3e-13 Score=141.07 Aligned_cols=218 Identities=8% Similarity=-0.052 Sum_probs=184.1
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC-hhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGK-VDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
...+|..++..+...|++++|+..|+++++.++. +..+++.+..++...|+ +++|+..|++.++.. +.+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 5678899999999999999999999999999855 88899999999999997 999999999999875 45788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCH
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD-QNKL 326 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 326 (831)
.++.+.|++++|+..|+++++.. +-+..+|..+..++...|++++|+..++++++.+ |.+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999875 4577899999999999999999999999999986 6788999999999999 6665
Q ss_pred hHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 003315 327 EKA-----ECVLLHMEKQGVVPDVYAYSALISGYCKFG--KINKALLLHHEMTSKGIKTNCGVLSVILKGLCQK 393 (831)
Q Consensus 327 ~~A-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 393 (831)
++| ...|++.++..+. +...|+.+..++.+.| ++++|++.+.++ +. ...+...+..+...+.+.
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 777 4888888887554 7788988888888888 688999988887 32 222344455555555443
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.2e-13 Score=136.86 Aligned_cols=226 Identities=12% Similarity=0.124 Sum_probs=140.4
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCC--C----cchH
Q 003315 415 KVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKP--D----IITY 488 (831)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 488 (831)
...+..+...+...|++++|+..|+++.+.. .+...+..+...+...|++++|...++++.+..+.. + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3445556666666666666666666655544 455555566666666666666666666655432110 1 2445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHH
Q 003315 489 NVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTK 568 (831)
Q Consensus 489 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 568 (831)
..+...+...|++++|...++++.+. .+. ...+...|+++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~-----------------------------------~~~-----~~~~~~~~~~~ 122 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE-----------------------------------HRT-----ADILTKLRNAE 122 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CCC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc-----------------------------------Cch-----hHHHHHHhHHH
Confidence 55555555555555555555555543 222 12333444555
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 569 EAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLV 648 (831)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 648 (831)
+|...++++....+. +...+..++..+...|++++|...++++.... +.+..++..++.+|...|++++|...|++++
T Consensus 123 ~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 123 KELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 555555555554332 34455666666666777777777777776654 3456777788888888888888888888888
Q ss_pred HCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 649 DKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 649 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
+..+. +...|..+...|.+.|++++|...+++..+.
T Consensus 201 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 201 EKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 76433 5777888888888888888888888887763
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=2e-13 Score=136.51 Aligned_cols=199 Identities=12% Similarity=0.017 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh----hHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY----TYVI 245 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~ 245 (831)
+.++...+..+...|++++|+..|+++++..+. +..++..++.++...|++++|+..|++..+.+ ++.. .|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHH
Confidence 345667888899999999999999999988754 66788889999999999999999999988733 3333 3788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...+++.++.. |.+...+..+...+...++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 8889999999999999999998864 3456788888889999999999999998888774 6677778878734444568
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhC
Q 003315 326 LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGK---INKALLLHHEMTSK 374 (831)
Q Consensus 326 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~ 374 (831)
+++|.+.|+++.+..+. +...+..+..++...|+ +++|...+++..+.
T Consensus 158 ~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 99999999988886433 46777777778877777 77788888777653
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=2.1e-11 Score=134.98 Aligned_cols=473 Identities=10% Similarity=0.013 Sum_probs=263.5
Q ss_pred ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---hHHHHH
Q 003315 185 MFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS---MQEAVE 261 (831)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 261 (831)
...+-+..|++.+..++. |..+|..++..+.+.+.++.+..+|++++.. .|.....|...+..-.+.|. ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 455666677777777754 8888888888888888888888999888875 35566778777877777888 888888
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHHC-CC-C-CChhhHHHHHHHHHh-------
Q 003315 262 VFLEMEKAG-VTPNAFAYSTCIEGLCMNGML--------DLGYELLLKWEEA-DI-P-LSAFAYTVVIRWFCD------- 322 (831)
Q Consensus 262 ~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~-~~~~~~~~l~~~~~~------- 322 (831)
+|++.+... ..|++..|...+.-..+.++. +...++|+.++.. |. . .+...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 988888752 137777777777655554443 2334666665543 43 2 345667766665432
Q ss_pred --cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 003315 323 --QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATI 400 (831)
Q Consensus 323 --~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 400 (831)
.++++.+.++|++++......-..+|......--..+. ..+..++.+. ..+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHH
Confidence 33456677777777643111111222211111000000 0011111110 01112222
Q ss_pred HHHHHHHHC--CCC---cCH-hhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-------Ch
Q 003315 401 KQFLEFKDM--GFF---LNK-VCYDVIVDSLCKLG-EVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQG-------KL 466 (831)
Q Consensus 401 ~~~~~~~~~--~~~---~~~-~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~ 466 (831)
..+.++... ++. |.. ...+ ....-..+ .....+ ..|...+..--..+ ..
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql---------------~lW~~yi~fEk~~~~~l~~~~~~ 325 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQL---------------LIWLEWIRWESDNKLELSDDLHK 325 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHH---------------HHHHHHHHHHHTCTTCCCHHHHH
T ss_pred HHHHHHHHHHHhHhhccccccccch--hccCCCCchhHHHHH---------------HHHHHHHHHHHhCCccccchhhH
Confidence 222221110 000 000 0000 00000000 000000 11222221111111 01
Q ss_pred hhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003315 467 GDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAF-DLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDG 545 (831)
Q Consensus 467 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (831)
+.+..+|++++...+. ....|...+..+...|+.++|. +++++.... ++.+...+...+....+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2233445555444222 4445555555555555555564 666666543 244444455555555566666666666665
Q ss_pred hhhC-----------CC--------------CChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 003315 546 LKGK-----------CL--------------ENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILR 600 (831)
Q Consensus 546 ~~~~-----------~~--------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 600 (831)
+... .| ..|-..+....+.|..+.|..+|.++.+.-+......|...+..-.+.+
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 5432 12 1255555555667788888888888877622223344444443344444
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHHcCCHHHHHH
Q 003315 601 -DNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTP--HLVTYTMMIHGYCKINCLREARD 677 (831)
Q Consensus 601 -~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 677 (831)
+.+.|..+|+.+++. .+-+...+...++.....|+.+.|+.+|+.++.....+ ....|...+..-.+.|+.+.+..
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 589999999999886 34567777888888889999999999999999864322 34678888888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003315 678 VFNDMKQRGITPDVVTYTVLFDAHSK 703 (831)
Q Consensus 678 ~~~~m~~~~~~p~~~~~~~ll~~~~~ 703 (831)
+.+++.+. .|+......+.+-|.-
T Consensus 563 v~~R~~~~--~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 563 LEKRFFEK--FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp HHHHHHHH--STTCCHHHHHHHHTCB
T ss_pred HHHHHHHh--CCCCcHHHHHHHHhcC
Confidence 99999985 4555566666666644
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=3e-13 Score=135.23 Aligned_cols=237 Identities=12% Similarity=-0.002 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+..+...+..+...|++++|...+.++++..|. ++.++..++.+|...|++++|+..++++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 63 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-------------------SPYIYNRRAVCYYELAKYDLAQKDIETY 63 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-------------------CSTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455566666666666666666666655332 2224556666666666666666666666
Q ss_pred HHcCCCcC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 003315 197 NRRGFVWS--ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPN 274 (831)
Q Consensus 197 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 274 (831)
++....++ ..++..++..+...|++++|...|++..+.. +.+...+..+...+...|++++|++.|+++.+.. +.+
T Consensus 64 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~ 141 (272)
T 3u4t_A 64 FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTD 141 (272)
T ss_dssp HTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCC
T ss_pred HhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCc
Confidence 65321111 1225566666666666666666666666543 3345566666666666666666666666666542 334
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---HhHHHHHHHHHHHCC-CCCC------
Q 003315 275 AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK---LEKAECVLLHMEKQG-VVPD------ 344 (831)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------ 344 (831)
...+..+...+...+++++|...++++++.. |.+...+..+...+...|+ +++|...+++..+.. ..|+
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 220 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDEL 220 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHH
Confidence 4455555523333446667777666666653 4445666666666666666 666666666665431 0122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 345 VYAYSALISGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 345 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
...|..+...|.+.|++++|.+.+++..+..
T Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 221 IEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2455666677777777777777777776643
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=6.8e-13 Score=130.82 Aligned_cols=202 Identities=10% Similarity=-0.081 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
+.++..++..+...|++++|+..|+++++..+. +..++..++.++...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 678889999999999999999999999988644 77888999999999999999999999998764 4577888999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
+...|++++|++.|+++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998732344 45678888889999999999999999998875 5678888999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 329 AECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 329 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
|...++++.+..+ .+...+..+...+.+.|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999887654 367788888889999999999999999988753
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=1.6e-13 Score=134.51 Aligned_cols=205 Identities=16% Similarity=0.079 Sum_probs=160.7
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 003315 166 STLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI 245 (831)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (831)
.+..+.++..++..+...|++++|+..|+++++..+. +..++..++..+...|++++|...|+++.+.. +.+...+..
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 96 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYG 96 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHH
Confidence 3456778899999999999999999999999987644 78889999999999999999999999998764 457788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998864 4567788889999999999999999999998875 5678889999999999999
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 326 LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 326 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
+++|.+.|+++.+.... +..++..+...|.+.|++++|...++++.+..
T Consensus 175 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999887543 67888899999999999999999999988754
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=5.4e-12 Score=126.00 Aligned_cols=224 Identities=9% Similarity=-0.053 Sum_probs=183.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCChhhHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVE----CGKVDMALAVYQHLKRLGLSLNEYTYV 244 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 244 (831)
++.++..++..|...|++++|+..|+++.+.+ +..++..+...+.. .+++++|...|++..+.+ ++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45678899999999999999999999998843 56778889999999 999999999999998864 778888
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 003315 245 IVIKALCK----KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM----NGMLDLGYELLLKWEEADIPLSAFAYTVV 316 (831)
Q Consensus 245 ~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (831)
.+...|.. .+++++|++.|++..+.+ +..++..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 89999998 999999999999998874 67788888888888 899999999999998876 56778888
Q ss_pred HHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 003315 317 IRWFCD----QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCK----FGKINKALLLHHEMTSKGIKTNCGVLSVILK 388 (831)
Q Consensus 317 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 388 (831)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+. ...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence 888888 899999999999988863 56778888888888 8999999999988887642 445555555
Q ss_pred HHHh----cCChHHHHHHHHHHHHCC
Q 003315 389 GLCQ----KGMASATIKQFLEFKDMG 410 (831)
Q Consensus 389 ~~~~----~~~~~~a~~~~~~~~~~~ 410 (831)
.+.. .++.++|++.|+...+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5655 666666666666655543
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.3e-12 Score=126.23 Aligned_cols=204 Identities=10% Similarity=-0.018 Sum_probs=174.6
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
.++.++..++..+...|++++|+..|+++.+..+. +..++..++.++...|++++|...|++..+.. +.+...+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 36678889999999999999999999999988644 67888999999999999999999999998764 45778889999
Q ss_pred HHHHhc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 248 KALCKK-GSMQEAVEVFLEMEKAGVTPN-AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 248 ~~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
..+... |++++|++.++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..++..+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999987322343 5678888899999999999999999998875 5568888999999999999
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 326 LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 326 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
+++|...++++.+..+..+...+..+...+...|+.+.|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999888654237777888888888999999999999888764
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1.4e-12 Score=128.66 Aligned_cols=202 Identities=9% Similarity=-0.088 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+..+..++..+...|++++|...+.++++..+. +..++..++..|...|++++|+..|+++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-------------------SADAHAALAVVFQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445667777888888888888888888876443 4567889999999999999999999999
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 197 NRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSL-NEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 275 (831)
.+..+. +..++..+...+...|++++|...|+++.+.+..| +...+..++..+...|++++|++.|+++.+.. +.+.
T Consensus 98 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 175 (252)
T 2ho1_A 98 LASDSR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQP 175 (252)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCH
T ss_pred HHHCcC-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccH
Confidence 888644 77888889999999999999999999988722223 56678888899999999999999999998864 4467
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG 340 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (831)
.++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 176 SVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 788899999999999999999999998875 6678888999999999999999999999998864
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=5.1e-12 Score=126.20 Aligned_cols=224 Identities=8% Similarity=-0.093 Sum_probs=164.4
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCChhHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVS----VGMFDEGID 191 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~ 191 (831)
++.++..++..+...|++++|...+.+.++. . ++.++..++..|.. .+++++|+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~-------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~ 63 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--K-------------------ENSGCFNLGVLYYQGQGVEKNLKKAAS 63 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T-------------------CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--C-------------------CHHHHHHHHHHHHcCCCcCCCHHHHHH
Confidence 5666777777777777777777777776652 1 23466677777777 778888888
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHH
Q 003315 192 ILFQINRRGFVWSICSCNYFMNQLVE----CGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK----KGSMQEAVEVF 263 (831)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 263 (831)
.|+++.+.+ +..++..+...+.. .+++++|+..|++..+.+ ++..+..+...|.. .+++++|++.|
T Consensus 64 ~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~ 137 (273)
T 1ouv_A 64 FYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYF 137 (273)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 888777764 56667777777777 778888888887777653 66677777777777 77888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHH
Q 003315 264 LEMEKAGVTPNAFAYSTCIEGLCM----NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD----QNKLEKAECVLLH 335 (831)
Q Consensus 264 ~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 335 (831)
++..+.+ +...+..+...|.. .+++++|...+++..+.+ ++..+..+...|.. .+++++|...|++
T Consensus 138 ~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 211 (273)
T 1ouv_A 138 TKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSK 211 (273)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 8777754 45566667777776 778888888888877764 45667777777777 7888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 003315 336 MEKQGVVPDVYAYSALISGYCK----FGKINKALLLHHEMTSKG 375 (831)
Q Consensus 336 ~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~ 375 (831)
..+.+ +...+..+...|.+ .+++++|.+.|++..+.+
T Consensus 212 a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 212 ACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77763 35667777777777 788888888888877764
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=1.6e-13 Score=137.34 Aligned_cols=228 Identities=14% Similarity=0.021 Sum_probs=176.4
Q ss_pred HHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChh
Q 003315 127 LCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSIC 206 (831)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 206 (831)
+...|++++|...+.++++..+.. .+..+.++..++..+...|++++|+..|+++++.++. +..
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~ 78 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALT---------------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPE 78 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHH
T ss_pred cCccchHHHHHHHHHHHHhccccc---------------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHH
Confidence 344567778888888777652211 1225678889999999999999999999999988744 788
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 207 SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLC 286 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (831)
++..++.++...|++++|...|++.++.. +.+...+..+...+.+.|++++|++.|+++.+. .|+.......+..+.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~ 155 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAE 155 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 89999999999999999999999998864 456788999999999999999999999999876 455544555555667
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHH
Q 003315 287 MNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVP---DVYAYSALISGYCKFGKINK 363 (831)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~ 363 (831)
..|++++|...+++..... +++...+ .++..+...++.++|.+.+++..+..... +...+..+...|.+.|++++
T Consensus 156 ~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence 7799999999998887764 4444444 37777778888888999888887652210 14677788888888899999
Q ss_pred HHHHHHHHHhCC
Q 003315 364 ALLLHHEMTSKG 375 (831)
Q Consensus 364 A~~~~~~~~~~~ 375 (831)
|...|++.....
T Consensus 234 A~~~~~~al~~~ 245 (275)
T 1xnf_A 234 ATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC
Confidence 999888888754
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=2.5e-13 Score=133.17 Aligned_cols=195 Identities=14% Similarity=0.078 Sum_probs=113.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCC
Q 003315 87 VVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGS 166 (831)
Q Consensus 87 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (831)
..+..+...|+++.|+.+|+.+.+.. +.++..+..++.++...|++++|...+.++++..+.
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------------- 89 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS----------------- 89 (243)
T ss_dssp --------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-----------------
Confidence 34455566677777777777776543 236667777777777777777777777766665332
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
+..++..++..+...|++++|+..++++.+..+. +..++..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 90 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 165 (243)
T 2q7f_A 90 --AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQF 165 (243)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred --chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 3455666777777777777777777776665533 55566666666666677777777666666543 3345566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666666666666666665542 233445555555566666666666666655554
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.8e-13 Score=137.05 Aligned_cols=247 Identities=10% Similarity=-0.022 Sum_probs=195.5
Q ss_pred ccCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchH
Q 003315 94 LRKEPKIALSFFEQLKRSGF---SHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLT 170 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (831)
..|+++.|+..|+.+.+... +.++.++..++.++...|++++|...+.++++..|. ++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------------------~~ 77 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-------------------MP 77 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------------CH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-------------------cH
Confidence 45889999999999986422 225778899999999999999999999999988554 56
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
.++..++..|...|++++|+..|+++++..+. +..++..++.++.+.|++++|...|+++.+.. |+.......+..+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLA 154 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 68899999999999999999999999998744 77889999999999999999999999999864 4444444555566
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CChhhHHHHHHHHHhcCCHh
Q 003315 251 CKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIP---LSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 327 (831)
...|++++|+..+++..... +++...+ .++..+...++.++|...+++..+.... .+..++..++..+.+.|+++
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence 77899999999998887753 3444444 4777788888899999999988765311 12578899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLH 368 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 368 (831)
+|...|++..+..+. + +.....++...|++++|++.+
T Consensus 233 ~A~~~~~~al~~~p~-~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 233 SATALFKLAVANNVH-N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCCT-T---CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhCCch-h---HHHHHHHHHHHHHHHhhHHHH
Confidence 999999999987432 3 233355677788888887765
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=3.2e-12 Score=123.40 Aligned_cols=203 Identities=9% Similarity=-0.093 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHH
Q 003315 115 HNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILF 194 (831)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 194 (831)
.++..+..++..+...|++++|...+.++++..+. +..++..++..|...|++++|+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~A~~~~~ 66 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-------------------NELAWLVRAEIYQYLKVNDKAQESFR 66 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-------------------chHHHHHHHHHHHHcCChHHHHHHHH
Confidence 35677788888888888998888888888877443 45577888888889999999999999
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHc-CChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003315 195 QINRRGFVWSICSCNYFMNQLVEC-GKVDMALAVYQHLKRLGLSL-NEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVT 272 (831)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 272 (831)
++.+..+. +..++..++..+... |++++|...|+++.+.+..| +...+..+...+...|++++|++.|+++.+.. +
T Consensus 67 ~a~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 144 (225)
T 2vq2_A 67 QALSIKPD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-P 144 (225)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHhCCC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 88887643 677788888888888 99999999998888722222 35678888888888999999999998888763 3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 273 PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIP-LSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
.+...+..+...+...|++++|...++++.+.. | .+...+..+...+...|+.+.|...++.+.+.
T Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 145 QFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 457788888888999999999999999888765 4 67777888888888899999999999888765
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=3.8e-13 Score=143.69 Aligned_cols=274 Identities=13% Similarity=0.018 Sum_probs=190.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 003315 87 VVEKLYSLRKEPKIALSFFEQLKRSGFSHNL----CTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALC 162 (831)
Q Consensus 87 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (831)
..+..+...|+++.|+.+|+.+.+.+.. ++ ..+..++.++...|++++|...+.++++.....
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------ 119 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM------------ 119 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc------------
Confidence 3455667889999999999999865322 44 578889999999999999999999887752110
Q ss_pred cCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-----CCcChhhHHHHHHHHHHcCC-----------------
Q 003315 163 GEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRG-----FVWSICSCNYFMNQLVECGK----------------- 220 (831)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~----------------- 220 (831)
.+.+....++..++..|...|++++|+..|+++++.. ......++..+...+...|+
T Consensus 120 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 120 -NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred -cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 1122356788999999999999999999999987651 12234577888888999999
Q ss_pred hhHHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC
Q 003315 221 VDMALAVYQHLKRL----GL-SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGV-TPN----AFAYSTCIEGLCMNGM 290 (831)
Q Consensus 221 ~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~ 290 (831)
+++|+..+++..+. +. +....++..+...+...|++++|++.+++..+... .++ ..++..+...+...|+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 88888888876542 11 11234677788888888999999988888765310 011 2266677777888888
Q ss_pred hhHHHHHHHHHHHCCC--C---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCC
Q 003315 291 LDLGYELLLKWEEADI--P---LSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV-----VPDVYAYSALISGYCKFGK 360 (831)
Q Consensus 291 ~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~~~ 360 (831)
+++|...+++..+... . ....++..+...+...|++++|...+++..+... .....++..+...|.+.|+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 8888888877665310 0 1145666777777777777777777777654310 0012355566667777777
Q ss_pred hHHHHHHHHHHHhC
Q 003315 361 INKALLLHHEMTSK 374 (831)
Q Consensus 361 ~~~A~~~~~~~~~~ 374 (831)
+++|...+++..+.
T Consensus 359 ~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 359 HERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666553
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=5.2e-12 Score=117.51 Aligned_cols=167 Identities=15% Similarity=0.020 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
++.+|..++..|...|++++|+..|+++++.++. +..++..+..++.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4668999999999999999999999999998855 88889999999999999999999999988764 456777888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
.+...++++.|.+.+++..+.. +.+...+..+..++.+.|++++|++.|++.++.+ |.+..++..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8899999999999999988764 4467788888888999999999999999988875 6678888889999999999999
Q ss_pred HHHHHHHHHHC
Q 003315 329 AECVLLHMEKQ 339 (831)
Q Consensus 329 A~~~~~~~~~~ 339 (831)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988875
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=2.7e-11 Score=123.07 Aligned_cols=218 Identities=9% Similarity=0.022 Sum_probs=175.8
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHH-------HcCCh-------hHHHHHHHHHHH-
Q 003315 134 KKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYV-------SVGMF-------DEGIDILFQINR- 198 (831)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~- 198 (831)
++|...|.+++...|. ++.+|..++..+. ..|++ ++|+.+|+++++
T Consensus 33 ~~a~~~~~~al~~~p~-------------------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~ 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-------------------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 93 (308)
T ss_dssp HHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCC-------------------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH
Confidence 5677888888887554 6678888888776 35886 999999999998
Q ss_pred cCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-hh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003315 199 RGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN-EY-TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAF 276 (831)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 276 (831)
..+. +...+..++..+.+.|++++|..+|++.++. .|+ .. .|..++..+.+.|++++|.++|+++.+.+ +++..
T Consensus 94 ~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~ 169 (308)
T 2ond_A 94 LLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHH 169 (308)
T ss_dssp TTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTH
T ss_pred hCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHH
Confidence 4543 7778999999999999999999999999985 343 44 79999999999999999999999999864 33444
Q ss_pred HHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCC--CHHHHHHHH
Q 003315 277 AYSTCIEGLC-MNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG-VVP--DVYAYSALI 352 (831)
Q Consensus 277 ~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~li 352 (831)
.|...+.... ..|++++|..+|++.++.. |.+...+..++..+.+.|++++|..+|++..... ..| ....|..++
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5544433322 3699999999999998874 6678889999999999999999999999999863 343 467888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 003315 353 SGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 353 ~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
....+.|+.+.|..+++++.+..
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHc
Confidence 88888999999999999888753
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=1.3e-09 Score=120.71 Aligned_cols=441 Identities=8% Similarity=-0.041 Sum_probs=275.1
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHH
Q 003315 98 PKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMI 177 (831)
Q Consensus 98 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 177 (831)
+..-+..|+.....+ +.|...|..++..+...+..+.+..+|..++...|. ....|...+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-------------------~~~lW~~Yi 107 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-------------------MANIWCMRL 107 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-------------------CHHHHHHHH
Confidence 444555556555443 459999999999999999999999999999988443 566788888
Q ss_pred HHHHHcCC---hhHHHHHHHHHHHcCC-CcChhhHHHHHHHHHHcCCh--------hHHHHHHHHHHh-cCC-CC-Chhh
Q 003315 178 KAYVSVGM---FDEGIDILFQINRRGF-VWSICSCNYFMNQLVECGKV--------DMALAVYQHLKR-LGL-SL-NEYT 242 (831)
Q Consensus 178 ~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~-~~~-~~-~~~~ 242 (831)
..-.+.|. ++.+..+|++++...+ .|++..|...+....+.++. +.+.++|+..+. .|. .+ +...
T Consensus 108 ~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~i 187 (679)
T 4e6h_A 108 SLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQF 187 (679)
T ss_dssp HHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred HHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHH
Confidence 88888888 9999999999998752 36888888877766665543 345588888764 354 34 3467
Q ss_pred HHHHHHHHH---------hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 003315 243 YVIVIKALC---------KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAY 313 (831)
Q Consensus 243 ~~~l~~~~~---------~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (831)
|...+.... ..++.+.+..+|++++......-..+|......-...+. ..+..++.+
T Consensus 188 W~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e------------- 253 (679)
T 4e6h_A 188 WNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE------------- 253 (679)
T ss_dssp HHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-------------
T ss_pred HHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-------------
Confidence 777776543 234577889999998853211112233222111101010 011111111
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHC--CCC---------------C-----C---HHHHHHHHHHHHhcC-------Ch
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEKQ--GVV---------------P-----D---VYAYSALISGYCKFG-------KI 361 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---------------p-----~---~~~~~~li~~~~~~~-------~~ 361 (831)
...+++.|...+.++... ++. | + ...|...+..--..+ ..
T Consensus 254 --------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~ 325 (679)
T 4e6h_A 254 --------LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHK 325 (679)
T ss_dssp --------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHH
T ss_pred --------hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhH
Confidence 011223333333332110 000 0 0 133444444322222 12
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHH-HHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 362 NKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATI-KQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKE 440 (831)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (831)
+.+..+|++.+... .-+...|...+..+...|+.++|. ++|+...... +.+...+...+....+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556677766542 235666767777777777777775 7777776543 33556666777777778888888888887
Q ss_pred HHhCC---------CCC------------ChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc-
Q 003315 441 MKDRQ---------IVP------------DVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQY- 498 (831)
Q Consensus 441 ~~~~~---------~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 498 (831)
+.+.. ..| ....|...+....+.|+.+.|..+|.++.+.-.......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 76521 012 12367777777778888889999998887751112233444333333333
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC------ChHHHHHHHHhcCCHHHHHH
Q 003315 499 GAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLE------NYSAMINGYCKTGHTKEAFQ 572 (831)
Q Consensus 499 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~ 572 (831)
++.+.|..+|+..++. ++.+...+...+......|+.+.|..+|+......+. .|...+..-.+.|+.+.+..
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4588899999888876 4556666677777777888999999999988887663 16666666677899999999
Q ss_pred HHHHHHhCCCC
Q 003315 573 LFMRLSNQGVL 583 (831)
Q Consensus 573 ~~~~~~~~~~~ 583 (831)
+.+++.+.-+.
T Consensus 563 v~~R~~~~~P~ 573 (679)
T 4e6h_A 563 LEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHHhCCC
Confidence 99998887653
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=1e-12 Score=140.02 Aligned_cols=237 Identities=13% Similarity=-0.031 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHHcCChhHHHHHHHHHHhc----CCCC-C
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS----ICSCNYFMNQLVECGKVDMALAVYQHLKRL----GLSL-N 239 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~ 239 (831)
...++...+..+...|++++|+..|+++++.++. + ..++..+...+...|++++|...|++..+. +.+| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4456778899999999999999999999988644 3 356788889999999999999999987642 1111 2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hhHH
Q 003315 240 EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGV-TPN----AFAYSTCIEGLCMNGM--------------------LDLG 294 (831)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~--------------------~~~a 294 (831)
..++..+...+...|++++|+..++++.+... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45778888899999999999999998876310 012 3477788888888998 8888
Q ss_pred HHHHHHHHHC----C-CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHH
Q 003315 295 YELLLKWEEA----D-IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV-VPD----VYAYSALISGYCKFGKINKA 364 (831)
Q Consensus 295 ~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~~A 364 (831)
...+++..+. + .+....++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888776543 1 111234677788888888888888888888765311 112 23667777788888888888
Q ss_pred HHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 365 LLLHHEMTSKGIK-TN----CGVLSVILKGLCQKGMASATIKQFLEF 406 (831)
Q Consensus 365 ~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~ 406 (831)
...+++....... .+ ..++..+...+...|++++|...++..
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 8888776542110 01 223334444444444554444444443
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=1.9e-12 Score=138.15 Aligned_cols=280 Identities=11% Similarity=-0.037 Sum_probs=187.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh----hhHHHHHHHHHHcCChhHHHHHHHHHHhc----C-CCCC
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSI----CSCNYFMNQLVECGKVDMALAVYQHLKRL----G-LSLN 239 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~ 239 (831)
....+..++..+...|++++|+..|+++++.++. +. .++..+...+...|++++|...|++..+. + .+..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3445668889999999999999999999988644 43 46888899999999999999999987753 1 1223
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC-----------------hhHHHHH
Q 003315 240 EYTYVIVIKALCKKGSMQEAVEVFLEMEKA----G-VTPNAFAYSTCIEGLCMNGM-----------------LDLGYEL 297 (831)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~~~-----------------~~~a~~~ 297 (831)
...+..+...|...|++++|++.++++.+. + ......++..+...|...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 457888889999999999999999988764 1 11224467778888888888 8888888
Q ss_pred HHHHHHC----C-CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHH
Q 003315 298 LLKWEEA----D-IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVV-PD----VYAYSALISGYCKFGKINKALLL 367 (831)
Q Consensus 298 ~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~A~~~ 367 (831)
+++..+. + .+....++..+...+...|++++|...+++..+.... ++ ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8776542 1 1112346777788888888888888888777653110 11 22566677777778888888777
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 003315 368 HHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQ-- 445 (831)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 445 (831)
+++......... + ......++..+...+...|++++|...+++.....
T Consensus 286 ~~~al~~~~~~~---------------~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 286 YKRTLALAVELG---------------E---------------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHHTT---------------C---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---------------C---------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 777654211000 0 00013344555666666666666666666554320
Q ss_pred ---CCCChhhHHHHHHHHHccCChhhHHHHHHHHHHc
Q 003315 446 ---IVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEM 479 (831)
Q Consensus 446 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 479 (831)
......++..+...|...|++++|...+++..+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0011335556666677777777777777776654
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=2.1e-12 Score=137.56 Aligned_cols=243 Identities=15% Similarity=0.047 Sum_probs=152.9
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
....+...+..+...|++++|...+.++++..+... .....++..++..|...|++++|+..+++
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 72 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL---------------KTLSAIYSQLGNAYFYLHDYAKALEYHHH 72 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444555666666677777777777777666533211 01234566777777777777777777776
Q ss_pred HHHc----CC-CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHhcCC----------
Q 003315 196 INRR----GF-VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLN----EYTYVIVIKALCKKGS---------- 255 (831)
Q Consensus 196 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~---------- 255 (831)
++.. +. +....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 73 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 73 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchh
Confidence 5433 11 11244566666777777777777777776654210 011 3366667777777777
Q ss_pred ----------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCC---ChhhHHH
Q 003315 256 ----------MQEAVEVFLEMEKA----GVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEAD--IPL---SAFAYTV 315 (831)
Q Consensus 256 ----------~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~~~~~~ 315 (831)
+++|++.+++..+. +..| ...++..+...+...|++++|...+++..+.. .+. ...++..
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 232 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 232 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 77777777766542 1111 12356677777778888888888887776531 111 1236777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 316 VIRWFCDQNKLEKAECVLLHMEKQGVV-PD----VYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+
T Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 888888888888888888877643111 11 45677788888888888888888887764
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=8.3e-12 Score=128.95 Aligned_cols=277 Identities=13% Similarity=-0.006 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHHcCChhHHHHHHHHHHhc----CCC-CChh
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS----ICSCNYFMNQLVECGKVDMALAVYQHLKRL----GLS-LNEY 241 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~ 241 (831)
..+...+..+...|++++|+..|+++++.++. + ..++..+...+...|++++|...+++..+. +.+ ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 35567788899999999999999999987644 3 356788899999999999999999887642 111 1245
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hhHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGV-TPN----AFAYSTCIEGLCMNGM--------------------LDLGYE 296 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 296 (831)
.+..+...+...|++++|.+.++++.+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778888899999999999999998765310 112 3367777888888888 888888
Q ss_pred HHHHHHHC----C-CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHH
Q 003315 297 LLLKWEEA----D-IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV-VPD----VYAYSALISGYCKFGKINKALL 366 (831)
Q Consensus 297 ~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~~A~~ 366 (831)
.+++..+. + .+....++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776542 1 111234667777778888888888888877664310 011 2256666777777777777777
Q ss_pred HHHHHHhCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003315 367 LHHEMTSKGIK-TNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQ 445 (831)
Q Consensus 367 ~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (831)
.+++....... .+. .....++..+...+...|++++|...+++.....
T Consensus 245 ~~~~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 245 YYKKTLLLARQLKDR-------------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcch-------------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 77766532100 000 0013345556666666677777766666654320
Q ss_pred -----CCCChhhHHHHHHHHHccCChhhHHHHHHHHHHc
Q 003315 446 -----IVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEM 479 (831)
Q Consensus 446 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 479 (831)
......++..+...|...|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0111335566677777777777777777777654
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=3.8e-12 Score=137.55 Aligned_cols=196 Identities=8% Similarity=-0.127 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMF-DEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
...++..++..|...|++ ++|+..|+++++.++. +..++..+..+|.+.|++++|...|++.++.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 567788888888889999 9999999998888744 67788888888999999999999998888754 6677888888
Q ss_pred HHHHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCC---
Q 003315 248 KALCKK---------GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMN--------GMLDLGYELLLKWEEADIP--- 307 (831)
Q Consensus 248 ~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~--- 307 (831)
..+... |++++|++.|+++.+.. +.+...+..+..+|... |++++|...|++.++.+ |
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 888888 88889999988888764 44577888888888887 88888888888888864 4
Q ss_pred CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003315 308 LSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHE 370 (831)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 370 (831)
.+...+..+...|...|++++|.+.|++..+..+. +...+..+..++...|++++|++.+..
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57788888888888888888888888888876544 566777788888888888888765543
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=7.3e-12 Score=129.38 Aligned_cols=274 Identities=14% Similarity=0.040 Sum_probs=178.3
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 003315 87 VVEKLYSLRKEPKIALSFFEQLKRSGFSHN----LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALC 162 (831)
Q Consensus 87 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (831)
..+..+...|+++.|+.+|+.+.+.+.. + ...+..++.++...|++++|...+.+.+......
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------ 76 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI------------ 76 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc------------
Confidence 4456667789999999999988754322 3 4667788888889999999998888876652110
Q ss_pred cCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-cC----hhhHHHHHHHHHHcCC-----------------
Q 003315 163 GEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV-WS----ICSCNYFMNQLVECGK----------------- 220 (831)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~----------------- 220 (831)
.+.+....++..++..|...|++++|+..++++++.... ++ ..++..+...+...|+
T Consensus 77 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 77 -GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred -cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 011224567888889999999999999998887654211 11 3367777888888888
Q ss_pred ---hhHHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh
Q 003315 221 ---VDMALAVYQHLKRL----GL-SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGV-TPN----AFAYSTCIEGLCM 287 (831)
Q Consensus 221 ---~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~ 287 (831)
+++|...+++..+. +. +.....+..+...+...|++++|.+.++++.+... .++ ..++..+...+..
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 88888888776532 10 11133667777778888888888888887764310 011 2256666777777
Q ss_pred cCChhHHHHHHHHHHHCC--CC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHh
Q 003315 288 NGMLDLGYELLLKWEEAD--IP---LSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV-----VPDVYAYSALISGYCK 357 (831)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~li~~~~~ 357 (831)
.|++++|...+++..+.. .. ....++..+...+...|++++|...+++..+... .....++..+...|.+
T Consensus 236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 315 (338)
T 3ro2_A 236 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 315 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 777777777777765431 00 0144566667777777777777777766654210 0012345556666667
Q ss_pred cCChHHHHHHHHHHHhC
Q 003315 358 FGKINKALLLHHEMTSK 374 (831)
Q Consensus 358 ~~~~~~A~~~~~~~~~~ 374 (831)
.|++++|...+++..+.
T Consensus 316 ~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 316 LGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHC
T ss_pred cCChHHHHHHHHHHHHH
Confidence 77777777777666553
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=3.4e-11 Score=111.90 Aligned_cols=168 Identities=13% Similarity=0.048 Sum_probs=136.6
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++.+|..++.++...|++++|...|.++++.+|. ++.++..++.+|...|++++|+..+.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~la~~~~~~~~~~~a~~~~~~ 64 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-------------------NVETLLKLGKTYMDIGLPNDAIESLKK 64 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6778888888888888888888888888887554 556788888888888888888888888
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 275 (831)
+....+. +...+..+...+...++++.|...+++..+.. +.+...+..+...+.+.|++++|++.|++..+.. +.+.
T Consensus 65 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~ 141 (184)
T 3vtx_A 65 FVVLDTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFI 141 (184)
T ss_dssp HHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHhcCch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhh
Confidence 8877644 66777778888888888888888888887754 4567788888888888888888888888888764 4466
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEEAD 305 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (831)
.++..+..+|.+.|++++|...|++.++.+
T Consensus 142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 788888888888888888888888888764
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=1.3e-10 Score=118.02 Aligned_cols=215 Identities=12% Similarity=-0.060 Sum_probs=147.8
Q ss_pred hHHHHHHHHHHHcCCCcChhhHHHHHHHHH-------HcCCh-------hHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 187 DEGIDILFQINRRGFVWSICSCNYFMNQLV-------ECGKV-------DMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
++|+..|+++++..+. ++..|..++..+. +.|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6788899998887644 7778888777765 35775 8888999888873123456688888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCCHhHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPN-AF-AYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFC-DQNKLEKA 329 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 329 (831)
.|++++|.++|+++++. .|+ .. .|..++..+.+.|++++|..+|++.++.+ |.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999888875 443 33 78888888888888888888888888764 445555554444322 25888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC--HhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 330 ECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKG-IKTN--CGVLSVILKGLCQKGMASATIKQFLEF 406 (831)
Q Consensus 330 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~ 406 (831)
.++|++..+..+. +...|..++..+.+.|++++|..+|++.+... ..|+ ...+..++......|+.+.+..++..+
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888776433 67777788888888888888888888887752 2332 223333333333344444444443333
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=1.1e-11 Score=133.95 Aligned_cols=215 Identities=12% Similarity=-0.024 Sum_probs=186.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHH
Q 003315 97 EPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQ-KKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDA 175 (831)
Q Consensus 97 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (831)
..+.|+..+....... +.++..+..++.++...|++ ++|...+.++++..|. +..++..
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-------------------~~~a~~~ 142 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-------------------LVEAWNQ 142 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-------------------CHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-------------------CHHHHHH
Confidence 3556666776655432 45899999999999999999 9999999999998554 5678999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc---------CChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 176 MIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVEC---------GKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
++.+|...|++++|+..|+++++.. |+..++..+..++... |++++|+..|++.++.. +.+...|..+
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 219 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYIL 219 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 9999999999999999999999986 4468899999999999 99999999999999875 4578899999
Q ss_pred HHHHHhc--------CChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003315 247 IKALCKK--------GSMQEAVEVFLEMEKAGVT---PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV 315 (831)
Q Consensus 247 ~~~~~~~--------g~~~~A~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (831)
...|... |++++|++.|+++.+.. + .+...+..+..+|...|++++|.+.|++..+.. |.+...+..
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~ 297 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQR 297 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 9999998 99999999999999863 2 478899999999999999999999999999886 667888999
Q ss_pred HHHHHHhcCCHhHHHHHHHHH
Q 003315 316 VIRWFCDQNKLEKAECVLLHM 336 (831)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~ 336 (831)
+...+...|++++|.+.+.++
T Consensus 298 l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 298 EQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 999999999999988766443
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=5.3e-12 Score=128.86 Aligned_cols=176 Identities=12% Similarity=0.052 Sum_probs=134.9
Q ss_pred CChHHHHHHHHhccCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhH
Q 003315 82 LNTREVVEKLYSLRKEPKIALSFFEQLKRS-------GFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEA 154 (831)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 154 (831)
......++..+...|+++.|+.+|+.+.+. .......++..++.++...|++++|...+.+++....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------ 100 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE------ 100 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Confidence 344555667778889999999999998741 2233567788999999999999999999998876521
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------C-CCcChhhHHHHHHHHHHcCChhHHHHH
Q 003315 155 TDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR------G-FVWSICSCNYFMNQLVECGKVDMALAV 227 (831)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 227 (831)
.....+.+....++..++..|...|++++|+..|+++.+. + .+....++..+...+...|++++|...
T Consensus 101 -----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 101 -----KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175 (311)
T ss_dssp -----HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred -----HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1111223345678899999999999999999999998765 2 123455678888899999999999999
Q ss_pred HHHHHhc------CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 228 YQHLKRL------GLSL-NEYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 228 ~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
|++..+. +..| ...++..+...+...|++++|.+.++++.+
T Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988764 1112 345778888889999999999999998875
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=2.3e-11 Score=124.01 Aligned_cols=244 Identities=11% Similarity=-0.056 Sum_probs=176.8
Q ss_pred CCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc---
Q 003315 165 GSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR-------GFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL--- 234 (831)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 234 (831)
+.+....++..++..+...|++++|+..|+++++. ..+....++..+...+...|++++|...|++..+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999999999998874 33445677888999999999999999999998764
Q ss_pred ---CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003315 235 ---GL-SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA------GVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEE 303 (831)
Q Consensus 235 ---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (831)
+. +.....+..+...+...|++++|++.|+++.+. +..| ...++..+...+...|++++|...++++.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 223567888999999999999999999998864 2222 345788888999999999999999999887
Q ss_pred C------C-CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC-------CCCC-------HHHHHHHHHHHHhcCChH
Q 003315 304 A------D-IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG-------VVPD-------VYAYSALISGYCKFGKIN 362 (831)
Q Consensus 304 ~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~p~-------~~~~~~li~~~~~~~~~~ 362 (831)
. + .+....++..++..+...|++++|.+.++++.+.. ..+. ...+..+...+...+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 4 1 23345678899999999999999999999988631 1111 112222333444556666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 363 KALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDM 409 (831)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 409 (831)
++...++...... .....++..+...+...|++++|.+.+++..+.
T Consensus 262 ~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 262 EYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666776665432 224567788889999999999999999987754
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=7.4e-11 Score=124.32 Aligned_cols=224 Identities=7% Similarity=-0.093 Sum_probs=137.5
Q ss_pred HHcCChhHHHHHHHHHHHcC--C--CcChhhHHHHHHH--HHHcCChhHHH-----------HHHHHHHhcCCCCChhh-
Q 003315 181 VSVGMFDEGIDILFQINRRG--F--VWSICSCNYFMNQ--LVECGKVDMAL-----------AVYQHLKRLGLSLNEYT- 242 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~--~--~~~~~~~~~l~~~--~~~~~~~~~A~-----------~~~~~~~~~~~~~~~~~- 242 (831)
.+.+++++|..+++.+.+.- . .++...|-.++.. ..-.+..+.+. ..++.+.... .+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhH
Confidence 67899999999999886542 1 2223333333221 12223344444 6666665421 12122
Q ss_pred -----HHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC---
Q 003315 243 -----YVIVIKALCKKGSMQEAVEVFLEMEKA----GVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEA--DIP--- 307 (831)
Q Consensus 243 -----~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~--- 307 (831)
+......+...|++++|++.|+++.+. +-.+ ...++..+...+...|++++|...+++..+. ..+
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 223566677889999999999998764 1111 2357788888888999999999988887764 111
Q ss_pred -CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-
Q 003315 308 -LSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVV-PD----VYAYSALISGYCKFGKINKALLLHHEMTSK----GI- 376 (831)
Q Consensus 308 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~- 376 (831)
....+++.+...|...|++++|...|++..+.... ++ ..++..+..+|...|++++|+..+++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 12356777888888888888888888877653110 11 235667778888888888888888777652 11
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 377 KTNCGVLSVILKGLCQKGMASATIKQFLEF 406 (831)
Q Consensus 377 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 406 (831)
.....++..+...+...|++++|...+++.
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 222334444455555555555555555444
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=5.5e-11 Score=133.37 Aligned_cols=168 Identities=12% Similarity=0.002 Sum_probs=148.3
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
+-++.+++.|+.+|.+.|++++|+..|+++++..+. +..+++.+..+|.+.|++++|+..|++.++.. +.+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 446789999999999999999999999999998755 78899999999999999999999999999865 4567899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
...+.+.|++++|++.|+++++.. +-+..++..+..+|...|++++|++.|++.++.+ |.+...+..++..+...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 999999999999999999998864 3457788999999999999999999999998875 66788899999999999999
Q ss_pred hHHHHHHHHHHH
Q 003315 327 EKAECVLLHMEK 338 (831)
Q Consensus 327 ~~A~~~~~~~~~ 338 (831)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888888765
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=2e-10 Score=120.91 Aligned_cols=200 Identities=7% Similarity=-0.105 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCc-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-C-----Ch
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRR----GFVW-SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS-L-----NE 240 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-----~~ 240 (831)
.+...+..+...|++++|+..|+++.+. +..+ ...++..++..+...|++++|...+++..+.... + ..
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3445788889999999999999998864 2111 3467888999999999999999999887753111 1 13
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCh
Q 003315 241 YTYVIVIKALCKKGSMQEAVEVFLEMEKAGV-TPN----AFAYSTCIEGLCMNGMLDLGYELLLKWEE-----ADIPLSA 310 (831)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~ 310 (831)
.+++.+...|...|++++|++.|+++.+... .++ ..++..+..+|...|++++|...+++..+ .+.+...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 4678888889999999999999988875310 111 23677788888888888888888888776 2224446
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q 003315 311 FAYTVVIRWFCDQNKLEKAECVLLHMEKQGV---VP-DVYAYSALISGYCKFGK---INKALLLHHEM 371 (831)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~li~~~~~~~~---~~~A~~~~~~~ 371 (831)
.++..+...+.+.|++++|...+++..+... .| ....+..+...|...|+ +++|+.++++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 6778888888888888888888887765310 11 11224556666667777 55555555543
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=1e-09 Score=115.13 Aligned_cols=204 Identities=13% Similarity=-0.011 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChh----hHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCCh----h
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSIC----SCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLNE----Y 241 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~ 241 (831)
.+....+..+...|++++|+..+++++...+..+.. +++.+...+...|++++|...+++...... ..+. .
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 455567778889999999999999988865433332 466677888899999999999988775311 1122 2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----CCh
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKA----GVT--P-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIP----LSA 310 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 310 (831)
++..+...+...|++++|.+.+++..+. +.. | ...++..+...+...|++++|...+++..+.... ...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3566777888999999999999988653 211 2 2345666778888999999999999888764211 123
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 311 FAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPD--VYAYS----ALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~----~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
.++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++....
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 4677788888888999999988888765311111 11111 2334467888888888888877654
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=2.4e-10 Score=110.42 Aligned_cols=196 Identities=11% Similarity=-0.069 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
++..+...+..+...|++++|+..|+++++..+.++...+..+..++...|++++|+..|++..+.. +.+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5678899999999999999999999999998864677888889999999999999999999999864 446678999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--ChhhHHHHHHH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNA-------FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPL--SAFAYTVVIRW 319 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 319 (831)
.+...|++++|++.|++..+.. +.+. .+|..+...+...|++++|...|+++++.+ |. +...+..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 9999999999999999999863 2334 457888888999999999999999999875 55 56788888888
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 320 FCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
|...| ...++++...+.. +...|.... ....+.+++|+..+++..+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 86654 3445565554322 444554443 334567899999999998764
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=2.2e-10 Score=106.42 Aligned_cols=167 Identities=11% Similarity=-0.021 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+..++..+...|++++|+..++++.+..+. +..++..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3456777888888888888888888888776533 67777888888888888888888888877653 446677777777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888877653 3455666666667777777777777777766653 4455666666666666666666
Q ss_pred HHHHHHHHHHC
Q 003315 329 AECVLLHMEKQ 339 (831)
Q Consensus 329 A~~~~~~~~~~ 339 (831)
|.+.++++.+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666666543
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=1.3e-10 Score=130.25 Aligned_cols=166 Identities=13% Similarity=0.014 Sum_probs=138.3
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++.+++.++.++...|++++|...|+++++..|+ +..++..++.+|.+.|++++|+..|++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-------------------~~~a~~nLg~~l~~~g~~~eA~~~~~~ 68 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-------------------FAAAHSNLASVLQQQGKLQEALMHYKE 68 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4677888888888999999999999988888554 566888889999999999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 275 (831)
+++.++. +..++..+..++.+.|++++|++.|++.++.. +.+...|+.+...|.+.|++++|++.|+++++.. +-+.
T Consensus 69 Al~l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~ 145 (723)
T 4gyw_A 69 AIRISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFP 145 (723)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 8888754 77888888899999999999999998888764 4567788888888989999999999999888763 3356
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEE 303 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (831)
..+..+..++...|++++|.+.++++++
T Consensus 146 ~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 146 DAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 7888888889999999988888877665
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=1.1e-09 Score=114.88 Aligned_cols=275 Identities=11% Similarity=-0.001 Sum_probs=180.2
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003315 86 EVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLC----TYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEAL 161 (831)
Q Consensus 86 ~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (831)
.+...++...|+++.|...++.+.......++. ++..++.++...|++++|...+.+.+...+....
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------- 88 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV--------- 88 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---------
Confidence 344566678899999999999987543233332 4556677788889999999998887775332110
Q ss_pred hcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC----CC--c-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 162 CGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRG----FV--W-SICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
......++..++..+...|++++|+..++++++.. .. | ...++..+..++...|++++|...+++....
T Consensus 89 ----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 89 ----WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 01123456788888999999999999999876542 11 1 2345566778888999999999999887754
Q ss_pred CCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 235 GLSL----NEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPN--AFAYS----TCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 235 ~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
.... ....+..+...+...|++++|...+++..+....++ ..... ..+..+...|++++|...+++....
T Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 165 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 3111 134577777888888999999999988765311111 11111 2234466788888888888877654
Q ss_pred CCCCC---hhhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 305 DIPLS---AFAYTVVIRWFCDQNKLEKAECVLLHMEKQ----GVVPDV-YAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 305 ~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
...+. ...+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 32111 224566777788888888888887776542 111112 2455556667777777777777776654
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=8.2e-10 Score=106.59 Aligned_cols=207 Identities=9% Similarity=-0.095 Sum_probs=139.2
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHH
Q 003315 115 HNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILF 194 (831)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 194 (831)
.++..+...+..+...|++++|...+.++++..++ .+..++..++.++...|++++|+..|+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~ 66 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN------------------QDSVTAYNCGVCADNIKKYKEAADYFD 66 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT------------------CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC------------------CCcHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 36677777888888888888888888887776441 133456667888888888888888888
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 195 QINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNE-------YTYVIVIKALCKKGSMQEAVEVFLEME 267 (831)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~ 267 (831)
++++.++. +..++..+..++...|++++|...|++..+.. +.+. ..|..+...+...|++++|++.|+++.
T Consensus 67 ~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 67 IAIKKNYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHTTCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhCcc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 88877644 66677788888888888888888888877653 3344 446777777778888888888888887
Q ss_pred hCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 003315 268 KAGVTPN---AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPD 344 (831)
Q Consensus 268 ~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 344 (831)
+. .|+ ...+..+..++...| ...++++...+ +.+...+.... ....+.+++|...|++..+..+. +
T Consensus 145 ~~--~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~ 213 (228)
T 4i17_A 145 DV--TSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-R 213 (228)
T ss_dssp TS--SCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-C
T ss_pred hc--CCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-C
Confidence 65 444 456666666665443 33444444443 22333333332 33456678888888888876433 4
Q ss_pred HHHHHHHH
Q 003315 345 VYAYSALI 352 (831)
Q Consensus 345 ~~~~~~li 352 (831)
..+...+.
T Consensus 214 ~~~~~~l~ 221 (228)
T 4i17_A 214 TEIKQMQD 221 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=1.1e-09 Score=114.87 Aligned_cols=130 Identities=9% Similarity=-0.013 Sum_probs=76.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CC-CCHH
Q 003315 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVL-V-----KKSSCNKLITNLLILRDNNNALKLFKTMITLN----AE-PSKS 622 (831)
Q Consensus 554 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-p~~~ 622 (831)
+..++..|...|++++|+..+.++.+.... + ...++..++.++...|++++|...++++.... .. ....
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555556666665555555432111 0 12344556666666666666666666655421 01 1123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 623 MYDKLIGALCQAEEMEQAQLVFNVLVD-----KGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 623 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
++..++.+|...|++++|...++++++ ..+. ...++..+...|.+.|++++|...+++..+
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566677777777777777777777765 3222 355667777777777777777777777765
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=5.2e-10 Score=103.84 Aligned_cols=166 Identities=13% Similarity=0.038 Sum_probs=129.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003315 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG 284 (831)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (831)
...+..++..+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456667778888888888888888877653 4467778888888888888888888888887753 4456777778888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003315 285 LCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKA 364 (831)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 364 (831)
+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+..+. +...+..++..+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887764 556777888888888888888888888888776433 567777888888888888888
Q ss_pred HHHHHHHHhC
Q 003315 365 LLLHHEMTSK 374 (831)
Q Consensus 365 ~~~~~~~~~~ 374 (831)
...+++..+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888877654
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=3e-10 Score=113.77 Aligned_cols=234 Identities=9% Similarity=-0.031 Sum_probs=163.9
Q ss_pred cCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------C-C
Q 003315 129 CCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR------G-F 201 (831)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~ 201 (831)
..|++++|...+.+.++. +......+.+....++..++..|...|++++|+..|+++++. + .
T Consensus 13 ~~~~~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALED-----------LEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH 81 (283)
T ss_dssp CCSCSSSHHHHHHHHHHH-----------HHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred CCCCHHHHHHHHHHHHHH-----------HHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc
Confidence 456666777776665553 112222233446778999999999999999999999998865 2 2
Q ss_pred CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc------C-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----
Q 003315 202 VWSICSCNYFMNQLVECGKVDMALAVYQHLKRL------G-LSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA----- 269 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----- 269 (831)
+....++..+..++...|++++|...|++..+. . .+....++..+...+...|++++|++.|+++.+.
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 334667888999999999999999999998764 1 1233567888999999999999999999998875
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------C-CCCChhhHHHHHHHHHhcCCHhHHH------HHH
Q 003315 270 -GVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEA-------D-IPLSAFAYTVVIRWFCDQNKLEKAE------CVL 333 (831)
Q Consensus 270 -~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~-~~~~~~~~~~l~~~~~~~g~~~~A~------~~~ 333 (831)
+..| ...++..+..++...|++++|...++++.+. . .+.....+..+...+...+....+. ..+
T Consensus 162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
T 3edt_B 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWY 241 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 1122 3567888999999999999999999998863 1 1223334444444444433333322 222
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 334 LHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 334 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
+..... ......++..+...|.+.|++++|...+++.++.
T Consensus 242 ~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 242 KACKVD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -CCCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222111 1113457888999999999999999999988754
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=1.7e-09 Score=113.55 Aligned_cols=236 Identities=11% Similarity=-0.020 Sum_probs=156.1
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003315 87 VVEKLYSLRKEPKIALSFFEQLKRSG-FSH----NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEAL 161 (831)
Q Consensus 87 ~~~~l~~~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (831)
..+..+...|+++.|+.+|+.+.+.. ..+ ...++..++.++...|+++.|...+.+.++..+.....
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-------- 177 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY-------- 177 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------
Confidence 34566678899999999999987421 112 35678889999999999999999999988764321100
Q ss_pred hcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC----CC-cChhhHHHHHHHHHHcCChhHHHHHHHHHHh---
Q 003315 162 CGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRG----FV-WSICSCNYFMNQLVECGKVDMALAVYQHLKR--- 233 (831)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 233 (831)
......++..++..|...|++++|+..|+++++.. .. ....+++.++.++...|++++|...|++..+
T Consensus 178 ----~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 178 ----SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ----hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 01245688899999999999999999999987641 11 1234677788888888999999988888776
Q ss_pred --cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---C-CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHC
Q 003315 234 --LGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVT---P-NAFAYSTCIEGLCMNGM---LDLGYELLLKWEEA 304 (831)
Q Consensus 234 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~---p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 304 (831)
.. +....++..+...+.+.|++++|...+++..+.... | ....+..+...+...++ +.+|...+++. .
T Consensus 254 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~--~ 330 (378)
T 3q15_A 254 EKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK--N 330 (378)
T ss_dssp HHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT--T
T ss_pred hhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC--C
Confidence 32 233567777888888888888888888887764211 1 12234444445555565 44454444431 1
Q ss_pred CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003315 305 DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHME 337 (831)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (831)
..+.....+..++..|...|++++|...|++..
T Consensus 331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111122344455555556666666655555554
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=1.5e-09 Score=108.58 Aligned_cols=235 Identities=12% Similarity=-0.003 Sum_probs=164.6
Q ss_pred ccCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCC
Q 003315 94 LRKEPKIALSFFEQLKR-------SGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGS 166 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (831)
..|+++.|+.+|+++.+ .+.+....++..++.++...|++++|...+.++++... ...+.+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----------~~~~~~~ 81 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIRE-----------KTLGKDH 81 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HHTCTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-----------HHcCCcc
Confidence 35677777777776652 22233577888999999999999999999999877521 1111223
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-------CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc-----
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRG-------FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL----- 234 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 234 (831)
+....++..++..|...|++++|+..|+++++.. .+....++..+...+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 4467789999999999999999999999988651 1234667888999999999999999999998864
Q ss_pred -C-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH--
Q 003315 235 -G-LSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA-------GVTPN-AFAYSTCIEGLCMNGMLDLGYELLLKWE-- 302 (831)
Q Consensus 235 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 302 (831)
+ .+....++..+...+...|++++|++.++++.+. ...+. ...+..+.......+....+..+.....
T Consensus 162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
T 3edt_B 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWY 241 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 1 1223567888999999999999999999998763 11222 2234444444444343333322211111
Q ss_pred HC---CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 303 EA---DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 303 ~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
+. ..+....++..++..|...|++++|...|++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 242 KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 11334567889999999999999999999998763
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=2.5e-09 Score=107.49 Aligned_cols=172 Identities=7% Similarity=-0.051 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCC-C----
Q 003315 622 SMYDKLIGALCQAEEMEQAQLVFNVLVDKGLT-PH----LVTYTMMIHGYCKI-NCLREARDVFNDMKQRGITP-D---- 690 (831)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p-~---- 690 (831)
.+|..++.+|.+.|++++|...++++++.... .+ ..+++.+...|... |++++|+..|++.++..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34555566666666666666666655542100 01 23566666677764 77777777777666421000 1
Q ss_pred HHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChHHHHHHH
Q 003315 691 VVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDV------ISYTVLIAKLCNTQNLEDGITVF 764 (831)
Q Consensus 691 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~ 764 (831)
..++..+-..+.. .+++++|+..+++..+....... ..|..++.++...|++++|++.+
T Consensus 158 ~~~~~~lg~~~~~---------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 158 NKCFIKCADLKAL---------------DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHHHHHH---------------TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1223333333333 45677777777777654322211 15677888899999999999999
Q ss_pred HHHHHCCCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHH
Q 003315 765 NEISDRGLEPDTV------TYTALLCGYL--AKGDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 765 ~~~~~~g~~pd~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
++..+ +.|+.. .+..++.+|. ..+++++|++.|+++.. +.|+..
T Consensus 223 ~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~~ 274 (292)
T 1qqe_A 223 QEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWKI 274 (292)
T ss_dssp HGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHHH
T ss_pred HHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHHH
Confidence 99986 455422 3445666664 45778899988877765 566553
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.07 E-value=4.7e-09 Score=99.30 Aligned_cols=170 Identities=12% Similarity=-0.031 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHH----------------HHHHHHHcCChhHHHHHHHHHHhc
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNY----------------FMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
..+...+..+...|++++|+..|+++++.++. +..++.. +..++.+.|++++|...|++.++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34556777888999999999999999987643 5555655 666666677777777777666665
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCChhh
Q 003315 235 GLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGM--LDLGYELLLKWEEADIPLSAFA 312 (831)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 312 (831)
. |.++..+..+...+...|++++|++.|+++++.. +.+..++..+...|...|+ .+.+...+..... .+|....
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 3 3455666666666666777777777776666653 3345556666655544432 2233333333321 1122223
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH
Q 003315 313 YTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYA 347 (831)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 347 (831)
+..+..++...|++++|...|++..+. .|+...
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 333444455556666666666666654 344433
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=5.1e-09 Score=103.39 Aligned_cols=103 Identities=5% Similarity=-0.161 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++..+...+..+...|++++|...|..+++..|. .+..+.++..++.+|...|++++|+..|++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 77 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT----------------HEWAADAQFYLARAYYQNKEYLLAASEYER 77 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC----------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----------------CcchHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4555555555555666666666666655554332 111244555666666666666666666666
Q ss_pred HHHcCCC--cChhhHHHHHHHHHH--------cCChhHHHHHHHHHHhc
Q 003315 196 INRRGFV--WSICSCNYFMNQLVE--------CGKVDMALAVYQHLKRL 234 (831)
Q Consensus 196 ~~~~~~~--~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~ 234 (831)
+++..+. ....++..+..++.. .|++++|...|+++++.
T Consensus 78 ~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 78 FIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 5554321 112344455555555 56666666666665543
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.06 E-value=4.9e-09 Score=103.51 Aligned_cols=101 Identities=11% Similarity=0.066 Sum_probs=85.0
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-C-CChhh
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS---ICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-S-LNEYT 242 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~-~~~~~ 242 (831)
.++..+..++..+.+.|++++|+..|+++++..+. + ..++..++.++.+.|++++|+..|+++++... . .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35678889999999999999999999999988644 4 66788899999999999999999999998631 1 12456
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHhC
Q 003315 243 YVIVIKALCK--------KGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 243 ~~~l~~~~~~--------~g~~~~A~~~~~~m~~~ 269 (831)
+..+...+.. .|++++|+..|+++++.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 7778888888 99999999999999876
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.06 E-value=6.9e-09 Score=98.15 Aligned_cols=142 Identities=12% Similarity=0.018 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
.....++.+|.+.|++++|+..|+++++.++. +..++..+..++...|++++|+..|++.++.. |.++.+|..+...|
T Consensus 55 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 55 KLATELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34445999999999999999999999999855 88899999999999999999999999999875 55778899888888
Q ss_pred HhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 003315 251 CKKGS--MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIR 318 (831)
Q Consensus 251 ~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (831)
...|+ .+.+...++.... ..|....+.....++...|++++|...|++.++.. |+......+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~l~~ 198 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 76654 4556666666542 23334445556667778899999999999999864 55544444433
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=1.3e-07 Score=92.47 Aligned_cols=179 Identities=9% Similarity=-0.026 Sum_probs=85.2
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 189 GIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLNEYTYVIVIKALCKKGSMQEAVEVFLEME 267 (831)
Q Consensus 189 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 267 (831)
|+..+++.+..+ .++..+...++.++...|++++|++++.+.+..+. ..+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554443 22333444555555556666666666655544331 1234455555555666666666666666665
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHhcC--ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 003315 268 KAGVTP-----NAFAYSTCIEG--LCMNG--MLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEK 338 (831)
Q Consensus 268 ~~~~~p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (831)
+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+......+..++.+.|++++|++.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 34 23333334333 22222 556666666665443 22212222233355556666666666654443
Q ss_pred CC-----C----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 339 QG-----V----VPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 339 ~~-----~----~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
.- - ..|..+...+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 0 1134444334444444454 555566665554
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=4e-09 Score=119.30 Aligned_cols=174 Identities=9% Similarity=-0.094 Sum_probs=111.9
Q ss_pred HcCCChhhHHHHHHHHH--------HhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 003315 128 CCCGWQKKLESMLLELV--------RKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR 199 (831)
Q Consensus 128 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (831)
...|++++|.+.+.+++ +..+. +..++..++.+|...|++++|+..|+++++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 462 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-------------------SVELPLMEVRALLDLGDVAKATRKLDDLAER 462 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-------------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-------------------chhHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Confidence 55666777777777666 33222 3446667777777777777777777777766
Q ss_pred CCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003315 200 GFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYS 279 (831)
Q Consensus 200 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 279 (831)
++. +..++..+..++...|++++|+..|++.++.. +.+...|..+...+.+.|++++ ++.|+++.+.+ +.+...+.
T Consensus 463 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~ 538 (681)
T 2pzi_A 463 VGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAF 538 (681)
T ss_dssp HCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHH
T ss_pred Ccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHH
Confidence 533 66667777777777777777777777776653 3355666677777777777777 77777776653 33455667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 280 TCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
.+..++.+.|++++|...|+++.+.+ |.+...+..+..++...++
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 77777777777777777777766654 4445666666666655443
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=2.2e-07 Score=92.08 Aligned_cols=217 Identities=9% Similarity=-0.035 Sum_probs=157.8
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCcChhhHHHH
Q 003315 134 KKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVG--MFDEGIDILFQINRRGFVWSICSCNYF 211 (831)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (831)
++|+.++..++..+|+ ...+|+.-..++...| ++++++..++.++..++. +..+++..
T Consensus 50 ~~aL~~t~~~L~~nP~-------------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R 109 (306)
T 3dra_A 50 ERALHITELGINELAS-------------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYR 109 (306)
T ss_dssp HHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHH
T ss_pred HHHHHHHHHHHHHCcH-------------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHH
Confidence 4566677777777554 4557777777777777 888888888888888765 66677777
Q ss_pred HHHH----HHc---CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 212 MNQL----VEC---GKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQ--EAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 212 ~~~~----~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
..++ ... +++++++.+++.+++.. +.|..+|+--...+.+.|+++ ++++.++++.+.. +-|..+|+...
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~ 187 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 6666 555 67888888888888764 557778877777777788877 8888888888765 44667777777
Q ss_pred HHHHhcCC------hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-hHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q 003315 283 EGLCMNGM------LDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL-EKAECVLLHMEKQG--VVPDVYAYSALIS 353 (831)
Q Consensus 283 ~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~--~~p~~~~~~~li~ 353 (831)
.++...+. ++++++.+.+++..+ |.|...|+.+...+.+.|+. +++..+.+++.+.+ -..+...+..++.
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 66666665 777888888887775 66777887777777777764 33455666555432 1236677777888
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 003315 354 GYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 354 ~~~~~~~~~~A~~~~~~~~~ 373 (831)
+|.+.|+.++|++.++.+.+
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHh
Confidence 88888888888888888765
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=2.1e-09 Score=121.59 Aligned_cols=174 Identities=11% Similarity=-0.131 Sum_probs=130.6
Q ss_pred HHcCChhHHHHHHHHHH--------HcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 181 VSVGMFDEGIDILFQIN--------RRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
...|++++|++.+++++ +..+ .+...+..+..++...|++++|+..|++.++.. +.+...|..+...+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788888888888887 5543 366777888888888888888888888888754 4566788888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
.|++++|++.|+++.+.. +.+...+..+..++.+.|++++ .+.|+++++.+ |.+...+..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888888763 3356677788888888888888 88888888775 66777888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFGK 360 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~~ 360 (831)
|++..+.++. +...+..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 8888775332 35566666666655444
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=1.5e-08 Score=101.80 Aligned_cols=167 Identities=10% Similarity=-0.082 Sum_probs=86.7
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW 203 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 203 (831)
+.++...|++++|...+.+.++..+... +......++..++.+|...|++++|+..|+++++.....
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAG-------------NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3355667777777777777665422100 001124567777777777777777777777766532110
Q ss_pred -C----hhhHHHHHHHHHHc-CChhHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003315 204 -S----ICSCNYFMNQLVEC-GKVDMALAVYQHLKRLGLS-LN----EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVT 272 (831)
Q Consensus 204 -~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 272 (831)
+ ..+++.+..+|... |++++|+..|++.++.... .+ ..++..+...+.+.|++++|+..|+++.+....
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 1 23455555566654 6666666666655542100 00 234555555555566666666666555553211
Q ss_pred CCH------HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003315 273 PNA------FAYSTCIEGLCMNGMLDLGYELLLKWEE 303 (831)
Q Consensus 273 p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (831)
... .++..+..++...|++++|...+++.++
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111 0234444445555555555555555443
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.01 E-value=1.6e-09 Score=96.25 Aligned_cols=146 Identities=12% Similarity=-0.006 Sum_probs=102.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003315 176 MIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS 255 (831)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (831)
|+..+...|++++|+..++++....+. +...+..+..+|.+.|++++|+..|++.++.. |.++.+|..+...|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 555666777888888888887765432 45556677888888888888888888887764 4567788888888888888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 256 MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYEL-LLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
+++|+..|+++.+.. +-+..++..+...|.+.|+++++.+. +++.++.. |.++.+|....+.+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 888888888887763 33566777777778888877665544 46676664 5566777766666666654
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.99 E-value=2.2e-09 Score=95.31 Aligned_cols=144 Identities=6% Similarity=-0.076 Sum_probs=67.5
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcc
Q 003315 89 EKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTL 168 (831)
Q Consensus 89 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (831)
+.++..+|+++.|+..|..+.... +.++..+..++.++...|++++|...+.++++..|.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------------------- 63 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------------------- 63 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------
Confidence 344445555566666555554321 112333444555555555555555555555554332
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHH-HHHHHhcCCCCChhhHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAV-YQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~l~ 247 (831)
++.+|..++.+|...|++++|+..|+++++.++. +..++..+..++.+.|++++|... +++..+.. |.++.+|....
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~ 141 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKE 141 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3345555555555555555555555555554432 444555555555555555443333 24444432 23344444444
Q ss_pred HHHHhcC
Q 003315 248 KALCKKG 254 (831)
Q Consensus 248 ~~~~~~g 254 (831)
..+...|
T Consensus 142 ~ll~~~G 148 (150)
T 4ga2_A 142 QLLDCEG 148 (150)
T ss_dssp HHHHTCC
T ss_pred HHHHHhC
Confidence 4444333
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.98 E-value=3.8e-08 Score=94.41 Aligned_cols=188 Identities=11% Similarity=0.001 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh---hH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS--ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY---TY 243 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~ 243 (831)
++..+..++..+.+.|++++|+..|+++++..+... ..++..++.++.+.|++++|+..|+++++.. |.+.. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 455777889999999999999999999998754422 3567888999999999999999999999764 22222 45
Q ss_pred HHHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 244 VIVIKALCK------------------KGSMQEAVEVFLEMEKAGVTPNAF-AYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 244 ~~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
..+...+.+ .|++++|+..|+++++. .|+.. +........ .+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~--- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHH---
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHH---
Confidence 555555544 45677777777777764 33322 111111000 000000
Q ss_pred CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003315 305 DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPD--VYAYSALISGYCKFGKINKALLLHHEMTSKGIK 377 (831)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 377 (831)
......+...|.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|++.++.+...++.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01124567888899999999999999988643311 246778889999999999999999988876543
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.97 E-value=4.2e-08 Score=94.11 Aligned_cols=190 Identities=11% Similarity=-0.088 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++..+...+..+...|++++|...|..+++..|. .+..+.++..++.+|.+.|++++|+..|++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~----------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 66 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPF----------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDR 66 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4566677777888888888888888888877443 122345777888888888999999999888
Q ss_pred HHHcCCCcCh--hhHHHHHHHHHH------------------cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003315 196 INRRGFVWSI--CSCNYFMNQLVE------------------CGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS 255 (831)
Q Consensus 196 ~~~~~~~~~~--~~~~~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (831)
+++..+.... .++..+..++.. .|++++|...|+++++.. |.+...+.......
T Consensus 67 ~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----- 140 (225)
T 2yhc_A 67 FIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----- 140 (225)
T ss_dssp HHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH-----
T ss_pred HHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH-----
Confidence 8887644211 244445555543 578999999999998753 33333333221110
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHhHHHHH
Q 003315 256 MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSA---FAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
.+...+. .....+...+.+.|++++|...|+++++.. |.++ ..+..++.++.+.|++++|.+.
T Consensus 141 -----~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 141 -----FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp -----HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 0001110 112345667778888888888888888763 3332 5677788888888888888888
Q ss_pred HHHHHHCCC
Q 003315 333 LLHMEKQGV 341 (831)
Q Consensus 333 ~~~~~~~~~ 341 (831)
++.+...++
T Consensus 207 ~~~l~~~~~ 215 (225)
T 2yhc_A 207 AKIIAANSS 215 (225)
T ss_dssp HHHHHHCCS
T ss_pred HHHHHhhCC
Confidence 888877643
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=9.5e-07 Score=95.02 Aligned_cols=390 Identities=13% Similarity=0.018 Sum_probs=199.4
Q ss_pred HcC-ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHH
Q 003315 217 ECG-KVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGM-LDLG 294 (831)
Q Consensus 217 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a 294 (831)
+.| +.+.|..+|+.++..- |. |+++.+..+|++.+.. .|+...|...+.-..+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 3778888888887631 33 8899999999998875 5788888888777666653 3556
Q ss_pred HHHHHHHHHC-C-CCCChhhHHHHHHHHH----hcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHH
Q 003315 295 YELLLKWEEA-D-IPLSAFAYTVVIRWFC----DQNKLEKAECVLLHMEKQGVVPDVY-AYSALISGYCKFGKINKALLL 367 (831)
Q Consensus 295 ~~~~~~~~~~-~-~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~~~ 367 (831)
..+|+..+.. | .+.+...|...+..+. ..++++.+.++|++.+... ..+.. .|...... -+......+..+
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~f-E~~~~~~~~~~~ 145 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFENF-ELELNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHH-HHHhccccHHHH
Confidence 6777777654 3 2446677777777654 2456777888888887631 11211 11111111 111111122222
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC--C-----HHHHHHHHHH
Q 003315 368 HHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLG--E-----VEKAMILFKE 440 (831)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~ 440 (831)
+.+.. +.+..|..++..+...-...+...|...++.-...+ - .+.+..+|++
T Consensus 146 ~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 146 VGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 22111 112223333333221100012223333333221110 0 1233445555
Q ss_pred HHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003315 441 MKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNF 520 (831)
Q Consensus 441 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 520 (831)
+... .+.+...|...+..+.+.|+++.|..++++.... |....+.. .|....+.++. ++.+.+.
T Consensus 205 al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~------ 268 (493)
T 2uy1_A 205 ILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRK------ 268 (493)
T ss_dssp HHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHH------
T ss_pred HHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHH------
Confidence 4442 1223445555555555555555666666555554 22221111 11111111111 1111110
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc-
Q 003315 521 VTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLIL- 599 (831)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 599 (831)
+. ....+.+.. .........|...+....+.+..+.|..+|.++ .. +..+...+...+..-...
T Consensus 269 ---------~~-~~~~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 269 ---------YS-MGEAESAEK---VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp ---------TC--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred ---------HH-hhccchhhh---hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence 00 000000000 000000011444455555667788899999888 32 222333333222222233
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 003315 600 RDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVF 679 (831)
Q Consensus 600 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 679 (831)
++.+.|..+++.+.+.. +-+...+...++...+.|+.+.|+.+|+.+.+ ....|...+..-...|+.+.+..++
T Consensus 334 ~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36999999999998753 33455666778888899999999999999732 6788998888888899999999999
Q ss_pred HHHHH
Q 003315 680 NDMKQ 684 (831)
Q Consensus 680 ~~m~~ 684 (831)
+++.+
T Consensus 408 ~~~~~ 412 (493)
T 2uy1_A 408 DQKMD 412 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88874
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=3e-08 Score=86.06 Aligned_cols=130 Identities=21% Similarity=0.150 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
++..++..+...|++++|+..++++.+.++. +..++..++..+...|++++|...|+++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4556677777777777777777777766533 55666666777777777777777777766543 344556666666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
..|++++|.+.++++.+.. +.+..++..++..+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777666542 234445555555566666666666665555543
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=4.9e-07 Score=89.56 Aligned_cols=188 Identities=7% Similarity=-0.068 Sum_probs=143.7
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCCCChhhHHHHHHHH----Hhc-
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECG--KVDMALAVYQHLKRLGLSLNEYTYVIVIKAL----CKK- 253 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 253 (831)
.+....++|+..+++++..++. +..+++.-..++...+ +++++++.++.++... +.+..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 3334457999999999999865 7788999999999888 9999999999999865 45666777665555 455
Q ss_pred --CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----
Q 003315 254 --GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLD--LGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK---- 325 (831)
Q Consensus 254 --g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 325 (831)
++++++++.++++.+.. +-+..+|+.-.-++.+.|.++ ++++.++++++.+ +-|..+|+.....+...++
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 78899999999998864 457778888877788888888 8889999998876 5677777777776666666
Q ss_pred --HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHh
Q 003315 326 --LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINK-ALLLHHEMTS 373 (831)
Q Consensus 326 --~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~ 373 (831)
++++.+.++.++...+. |...|+-+...+.+.|+... +.++..++.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 78888888888877655 77788877777777776433 4445555543
No 104
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=2.9e-08 Score=86.09 Aligned_cols=127 Identities=21% Similarity=0.157 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM 287 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 287 (831)
+..++..+...|++++|..+|+++.+.. +.+...+..++..+...|++++|.+.++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444444555555555555555544432 2234444444444445555555555555544432 2233334444444444
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003315 288 NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHME 337 (831)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (831)
.|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444444444332 2233333444444444444444444444433
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.94 E-value=8.5e-09 Score=94.56 Aligned_cols=62 Identities=6% Similarity=-0.099 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 003315 275 AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPL-SAFAYTVVIRWFCDQNKLEKAECVLLHM 336 (831)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 336 (831)
...+..+..++...|++++|...|+++++.+..+ +...+..++..+...|+.++|...|++.
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 3344444444444444444444444444432111 1234444444444444444444444443
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=2e-08 Score=100.28 Aligned_cols=164 Identities=9% Similarity=-0.020 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH-HH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI-VI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~ 247 (831)
+...+..++..+.+.|++++|+..|+++++..+. +..++..+..++.+.|++++|...++++.... |+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 4456667777788888888888888888777644 66777777888888888888888888776543 44332222 22
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCC
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS--AFAYTVVIRWFCDQNK 325 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 325 (831)
..+.+.++.++|++.++++.+.. +.+...+..+...+...|++++|...|+++++.+ |.+ ...+..++..+...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 23556677777777777777653 3455667777777777777777777777777654 222 5566677777777777
Q ss_pred HhHHHHHHHHHH
Q 003315 326 LEKAECVLLHME 337 (831)
Q Consensus 326 ~~~A~~~~~~~~ 337 (831)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777766666544
No 107
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=1.5e-07 Score=92.00 Aligned_cols=246 Identities=12% Similarity=0.052 Sum_probs=127.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHH
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKA 329 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (831)
..-.|.+..++.-..++.. ......-..+.+++...|+++.. ..-.|....+..+...+ .. .|
T Consensus 23 ~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~----~a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DT----KN 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TT----TC
T ss_pred HHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-cc----cH
Confidence 3356777777763332211 12222333344666666665531 01122222333333332 21 15
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 330 ECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDM 409 (831)
Q Consensus 330 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 409 (831)
...|+++.+.+ .++..++..+..++...|++++|++++.+.+..+..+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~------------------------------- 133 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAE------------------------------- 133 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST-------------------------------
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc-------------------------------
Confidence 55566555443 2344444556666666666666666666655443211
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHH--HHccC--ChhhHHHHHHHHHHcC
Q 003315 410 GFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVP-----DVVNYTTMICG--YCLQG--KLGDALDLFKEMKEMG 480 (831)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~~~~ 480 (831)
-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...++.+ ....| ++.+|..+|+++.+..
T Consensus 134 ---~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 134 ---GTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp ---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred ---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 13445556666677777777777777776653 23 13344444444 22223 6777777777765542
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC
Q 003315 481 HKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRH-----G----LEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL 551 (831)
Q Consensus 481 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 551 (831)
|+..+...++.++.+.|++++|.+.++.+.+. + -+.++.++..+|......|+ +|.++++++....|
T Consensus 209 --p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 209 --PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp --CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred --CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 33222333444666777777777777765542 0 13345555444444444555 66677777766666
Q ss_pred CC
Q 003315 552 EN 553 (831)
Q Consensus 552 ~~ 553 (831)
++
T Consensus 285 ~h 286 (310)
T 3mv2_B 285 EH 286 (310)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.93 E-value=2.1e-08 Score=100.12 Aligned_cols=168 Identities=11% Similarity=-0.020 Sum_probs=139.4
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHH
Q 003315 115 HNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILF 194 (831)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 194 (831)
.+...+..++..+...|++++|...+++++...|. ++.++..++..+.+.|++++|+..++
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-------------------~~~a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-------------------NGEIGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-------------------CHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-------------------chhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46677888999999999999999999999998665 56788899999999999999999999
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C
Q 003315 195 QINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVT-P 273 (831)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p 273 (831)
++....+. ...........+.+.++.+.|...|++..+.. |.+...+..+...+...|++++|++.|+++++.... .
T Consensus 176 ~~~~~~p~-~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 176 TIPLQDQD-TRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp TSCGGGCS-HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred hCchhhcc-hHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 99887543 22333334445677888899999999988765 567889999999999999999999999999986321 1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003315 274 NAFAYSTCIEGLCMNGMLDLGYELLLKWEE 303 (831)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (831)
+...+..++..+...|+.++|...+++.+.
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 256889999999999999999999887654
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.93 E-value=1.3e-08 Score=93.41 Aligned_cols=162 Identities=14% Similarity=-0.015 Sum_probs=107.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG-LC 286 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~ 286 (831)
.......+...|++++|...|++.++.. |.+...+..+...+.+.|++++|+..|+++.+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4445556666666666666666655432 3345566666666666666666666666665442 233322222211 11
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003315 287 MNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVP-DVYAYSALISGYCKFGKINKAL 365 (831)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~ 365 (831)
..++..+|...+++.++.+ |.+...+..+...+...|++++|...|+++.+..+.+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223345677788877764 6678889999999999999999999999998875443 3567888888999999999999
Q ss_pred HHHHHHHh
Q 003315 366 LLHHEMTS 373 (831)
Q Consensus 366 ~~~~~~~~ 373 (831)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.91 E-value=1.8e-06 Score=92.93 Aligned_cols=357 Identities=10% Similarity=-0.045 Sum_probs=169.0
Q ss_pred CChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC-hhHHHHHHHHHHhc-CC-CCChhhHHHHHHHHH----hcCCh
Q 003315 184 GMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGK-VDMALAVYQHLKRL-GL-SLNEYTYVIVIKALC----KKGSM 256 (831)
Q Consensus 184 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~ 256 (831)
|+++.+..+|++.+.. .|++..|...+....+.+. .+....+|+..+.. |. +.+...|...+..+. ..|+.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7788999999998875 3588888888877766663 46677888887753 32 235567777766543 24667
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 003315 257 QEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM-------------NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ 323 (831)
Q Consensus 257 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (831)
+.+.++|++++......-...|......-.. .+.+..|..+++++...--..+...|..++..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 8888999998874211111122222111100 011122222222222110001222333333322111
Q ss_pred CC-------HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 003315 324 NK-------LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMA 396 (831)
Q Consensus 324 g~-------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 396 (831)
+. .+.+..+|+++....+. +...|...+..+.+.|+.++|..++++.... |....+.. .+....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcch
Confidence 00 12334455555443222 3444544454455555555555555555544 22111110 11110000
Q ss_pred HHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 003315 397 SATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEM 476 (831)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 476 (831)
++. ++.+.. .+.. ...+.+ .. .. .......|...+....+.++.+.|..+|+++
T Consensus 259 ~~~---~~~l~~---------------~~~~-~~~~~~-----~~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 259 EAV---YGDLKR---------------KYSM-GEAESA-----EK-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp THH---HHHHHH---------------HTC-----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hHH---HHHHHH---------------HHHh-hccchh-----hh-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 110 111100 0000 000000 00 00 0011234555555555667777777777777
Q ss_pred HHcCCCCCcchHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChH
Q 003315 477 KEMGHKPDIITYNVLAGAFAQ-YGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYS 555 (831)
Q Consensus 477 ~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 555 (831)
.. +..+...|...+..-.. .++.+.|..+++..++.. +.+...+...++...+.|+.+.|..+|+.+.+ ....|.
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~ 388 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWD 388 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHH
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHH
Confidence 22 11222333322222122 235777888887777642 33344445556666677778888888777631 122255
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 556 AMINGYCKTGHTKEAFQLFMRLSN 579 (831)
Q Consensus 556 ~l~~~~~~~g~~~~A~~~~~~~~~ 579 (831)
..+..-...|+.+.+..+++++.+
T Consensus 389 ~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 389 SMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555566787777777776653
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=1.2e-07 Score=89.86 Aligned_cols=176 Identities=14% Similarity=-0.008 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC----ChHHHHHHH
Q 003315 188 EGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG----SMQEAVEVF 263 (831)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 263 (831)
+|+..|+++.+.| ++.++..+...|...+++++|...|++..+.| ++..+..|...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555666666543 55556666666666666666666666666543 45555556655555 4 666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHHHh----cCCHhHHHHHHH
Q 003315 264 LEMEKAGVTPNAFAYSTCIEGLCM----NGMLDLGYELLLKWEEADIP-LSAFAYTVVIRWFCD----QNKLEKAECVLL 334 (831)
Q Consensus 264 ~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 334 (831)
++..+.| +..++..|...|.. .+++++|+..|++..+.+.. .++..+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6666543 44555556666655 56666666666666665411 115566666666666 566677777776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCC
Q 003315 335 HMEKQGVVPDVYAYSALISGYCKF-G-----KINKALLLHHEMTSKG 375 (831)
Q Consensus 335 ~~~~~~~~p~~~~~~~li~~~~~~-~-----~~~~A~~~~~~~~~~~ 375 (831)
+..+.+ .+...+..|..+|... | ++++|...|+...+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666641 2333455555555542 2 6666666666666554
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=3.7e-07 Score=86.37 Aligned_cols=177 Identities=14% Similarity=-0.056 Sum_probs=130.6
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHH
Q 003315 222 DMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNG----MLDLGYEL 297 (831)
Q Consensus 222 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~ 297 (831)
.+|.+.|++..+. .++..+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3577788888775 477888888888988999999999999998865 56777778887777 6 88999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHH
Q 003315 298 LLKWEEADIPLSAFAYTVVIRWFCD----QNKLEKAECVLLHMEKQGVV-PDVYAYSALISGYCK----FGKINKALLLH 368 (831)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~~~~~~A~~~~ 368 (831)
|++..+.+ ++..+..|...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+++++|+..|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99988765 66778888888877 78899999999998887531 026777888888887 77888888888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCC
Q 003315 369 HEMTSKGIKTNCGVLSVILKGLCQK-G-----MASATIKQFLEFKDMG 410 (831)
Q Consensus 369 ~~~~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 410 (831)
++..+.+ .+...+..+...|... | +.++|+..|+...+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8887762 1233444455554432 2 5666666666555543
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=5.9e-08 Score=107.89 Aligned_cols=153 Identities=9% Similarity=-0.108 Sum_probs=88.4
Q ss_pred CChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHH
Q 003315 131 GWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNY 210 (831)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (831)
|++++|...+.++++..+. +..++..++..|...|++++|+..|+++++.++. +..++..
T Consensus 3 g~~~~A~~~~~~al~~~p~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 62 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-------------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVAR 62 (568)
T ss_dssp ------------------C-------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 4556666666665554332 3456667777777777777777777777766533 5666666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--
Q 003315 211 FMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMN-- 288 (831)
Q Consensus 211 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-- 288 (831)
+..++...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+..++...
T Consensus 63 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 63 LGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhc
Confidence 7777777777777777777766653 3445666666777777777777777777766653 23455666666666666
Q ss_pred -CChhHHHHHHHHHHHCC
Q 003315 289 -GMLDLGYELLLKWEEAD 305 (831)
Q Consensus 289 -~~~~~a~~~~~~~~~~~ 305 (831)
|++++|.+.+++..+.+
T Consensus 141 ~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp CTTHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHhcC
Confidence 66666666666666654
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=5.1e-08 Score=108.39 Aligned_cols=156 Identities=10% Similarity=-0.025 Sum_probs=114.6
Q ss_pred cCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003315 183 VGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEV 262 (831)
Q Consensus 183 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (831)
.|++++|+..|+++++..+. +..++..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47888999999998887644 67788888999999999999999999988764 45677888888899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCHhHHHHHHHHHHHC
Q 003315 263 FLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ---NKLEKAECVLLHMEKQ 339 (831)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 339 (831)
|++..+.. +.+...+..+..++...|++++|.+.+++..+.+ +.+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988764 4456788888888999999999999999988875 56778888888888888 8999999999888876
Q ss_pred CCC
Q 003315 340 GVV 342 (831)
Q Consensus 340 ~~~ 342 (831)
+..
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
No 115
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.78 E-value=3.3e-06 Score=84.36 Aligned_cols=218 Identities=11% Similarity=0.029 Sum_probs=148.8
Q ss_pred hhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCcChhhHHHH
Q 003315 133 QKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVG-MFDEGIDILFQINRRGFVWSICSCNYF 211 (831)
Q Consensus 133 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (831)
.++|+.++..++..+|. +..+|+.-..++...| .+++++..++.+++.+++ +..+++..
T Consensus 70 se~AL~lt~~~L~~nP~-------------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR 129 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-------------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHR 129 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-------------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 34566777777777554 4456777777777777 488999999998888766 77788888
Q ss_pred HHHHHHc-C-ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 212 MNQLVEC-G-KVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQ--------EAVEVFLEMEKAGVTPNAFAYSTC 281 (831)
Q Consensus 212 ~~~~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~l 281 (831)
..++... + ++++++++++.+++.. +.|..+|+--...+.+.|.++ ++++.++++.+.. +-|..+|+..
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R 207 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWR 207 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 8888776 6 7888888888888764 457777776666666666666 8888888888765 4577788887
Q ss_pred HHHHHhcCC-------hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH--------------------hHHHHHHH
Q 003315 282 IEGLCMNGM-------LDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL--------------------EKAECVLL 334 (831)
Q Consensus 282 ~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~ 334 (831)
..++.+.+. ++++++.+.+++..+ |.|...|+.+-..+.+.|+- .+..+...
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF 286 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH
Confidence 777777775 577778887777765 66777777666666665543 22222222
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 335 HMEKQG-----VVPDVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 335 ~~~~~~-----~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
++...+ -.+.......|+.+|...|+.++|.++++.+.+
T Consensus 287 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 222221 024566666777777777777777777777654
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.75 E-value=2e-07 Score=79.49 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
...++...+..|.+.|++++|+..|+++++.++. +..++..+..++.+.|++++|+..|++.++.+ +.+...|..+..
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 4567778899999999999999999999888754 78888889999999999999999999988765 456778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 003315 249 ALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~ 269 (831)
++...|++++|++.|++.++.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998876
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.73 E-value=3.4e-07 Score=92.47 Aligned_cols=160 Identities=7% Similarity=-0.008 Sum_probs=77.1
Q ss_pred cCChhHHHHHHHHHHhC---C-C--CCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcC
Q 003315 95 RKEPKIALSFFEQLKRS---G-F--SHN----LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGE 164 (831)
Q Consensus 95 ~~~~~~A~~~~~~~~~~---~-~--~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (831)
.|++..|.++++++.+. + + .++ ...|..++.++...|++++|...+.+.++..+...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~------------- 70 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR------------- 70 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------------
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-------------
Confidence 35667777777766531 1 1 122 12344445555566666666666665554422100
Q ss_pred CCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC---Cc--ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-
Q 003315 165 GSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGF---VW--SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSL- 238 (831)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~- 238 (831)
+......++..++..|...|++++|+..|+++++... .+ ...+++.+..+|.. |++++|+..|++.++.....
T Consensus 71 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~ 149 (307)
T 2ifu_A 71 SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE 149 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC
Confidence 0011233555666666666666666666666543310 11 12334445555544 55555555555544321000
Q ss_pred C----hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 239 N----EYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 239 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
+ ..+++.+...+.+.|++++|++.|+++.+
T Consensus 150 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 23444455555555555555555555443
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.73 E-value=6.7e-06 Score=82.16 Aligned_cols=185 Identities=10% Similarity=-0.052 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECG-KVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
++..+.....+.+..++|+..+++++..++. +..+++....++...+ .+++++..++.++... +.+..+|+.-...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3334444444556667999999999999866 7888999999999988 5999999999999865 56778888877777
Q ss_pred Hhc-C-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 003315 251 CKK-G-SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLD--------LGYELLLKWEEADIPLSAFAYTVVIRWF 320 (831)
Q Consensus 251 ~~~-g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (831)
.+. + +++++++.++++.+.. +-|..+|+.-.-++.+.|.++ ++++.++++++.+ +-|..+|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 776 7 8999999999999865 456777777666666666666 8888899888876 66788888888777
Q ss_pred HhcCC-------HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 321 CDQNK-------LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKI 361 (831)
Q Consensus 321 ~~~g~-------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 361 (831)
.+.++ ++++.+.+++++...+. |...|+-+-..+.+.|+.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 77776 67888888888877555 777887776666665543
No 119
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.73 E-value=2.1e-07 Score=89.73 Aligned_cols=199 Identities=8% Similarity=-0.094 Sum_probs=144.6
Q ss_pred cCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHcCC
Q 003315 129 CCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAM-------IKAYVSVGMFDEGIDILFQINRRGF 201 (831)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~ 201 (831)
..++..+|...|.++++.+|. ...+|..+ ...+.+.++..+++..+.+.++..+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-------------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p 78 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-------------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISM 78 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCG
T ss_pred cCCCHHHHHHHHHHHHHhChh-------------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 467788888888888888655 44566666 5677777778888888887766321
Q ss_pred C-----cC---------------hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003315 202 V-----WS---------------ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVE 261 (831)
Q Consensus 202 ~-----~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (831)
. .+ ......+..++...|++++|.++|+.+...+ |+......+...+.+.|++++|+.
T Consensus 79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVID 156 (282)
T ss_dssp GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHH
Confidence 1 01 1233456778889999999999999887644 443366677778889999999999
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003315 262 VFLEMEKAGVTPN--AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPL--SAFAYTVVIRWFCDQNKLEKAECVLLHME 337 (831)
Q Consensus 262 ~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (831)
.|+...... .|. ...+..+..++...|++++|+..|++.......| .......+..++.+.|+.++|..+|+++.
T Consensus 157 ~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 157 QVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998665432 121 2367778888999999999999999988654313 34567778888899999999999999998
Q ss_pred HCCCCCCHHHHHHH
Q 003315 338 KQGVVPDVYAYSAL 351 (831)
Q Consensus 338 ~~~~~p~~~~~~~l 351 (831)
... |+...+..|
T Consensus 236 a~~--P~~~~~~aL 247 (282)
T 4f3v_A 236 TTH--PEPKVAAAL 247 (282)
T ss_dssp HHS--CCHHHHHHH
T ss_pred hcC--CcHHHHHHH
Confidence 863 444444333
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=2.3e-07 Score=93.78 Aligned_cols=200 Identities=7% Similarity=-0.091 Sum_probs=98.6
Q ss_pred cCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-----c
Q 003315 129 CCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV-----W 203 (831)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~ 203 (831)
..|++++|.+++.+..+..+...+. + ..+...-...|...+..|...|++++|+..|.++.+.... .
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~-------~-~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 74 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMK-------W-KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFH 74 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSS-------C-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccC-------C-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3567778888888766653321000 0 0111112335556666677777777777777766543211 0
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC---CCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CC--
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGL---SLN--EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGV---TP-- 273 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p-- 273 (831)
-..+++.+..+|.+.|++++|+..|++.++... .+. ..++..+...|.. |++++|++.|++..+... .+
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 123555666666666666666666666543210 011 2345555555555 666666666666554210 00
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003315 274 NAFAYSTCIEGLCMNGMLDLGYELLLKWEEAD----IPLS-AFAYTVVIRWFCDQNKLEKAECVLLHME 337 (831)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (831)
...++..+...+...|++++|+..|++.++.. ..+. ...+..++..+...|++++|...|++..
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 02344455555555555555555555554421 0000 1133334444444455555555555544
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.70 E-value=2.3e-07 Score=81.63 Aligned_cols=104 Identities=10% Similarity=-0.036 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
+..++..++..+.+.|++++|+..|+++++.++. +...+..+..++...|++++|+..|++..+.. |.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 5668888999999999999999999999988754 78888899999999999999999999988865 456778888999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAF 276 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 276 (831)
+|.+.|++++|++.|+++++. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999998876 45543
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=7.6e-08 Score=95.72 Aligned_cols=191 Identities=9% Similarity=-0.074 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
..+..++..+...|++++|+..|+++++..+. +...+..+..++.+.|++++|+..+++.++.. +.+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45556666666666666666666666665433 55566666666666666666666666666543 33455666666666
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHH
Q 003315 251 CKKGSMQEAVEVFLEMEKAGVTPNA-FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKA 329 (831)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (831)
...|++++|+..|+++.+.+ |+. ..+...+....+. .++.. +........+.+......+... ..|++++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 66666666666666665431 111 0011111111110 11111 1112222334444444444332 25677777
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhc-CChHHHHHHHHHHHh
Q 003315 330 ECVLLHMEKQGVVPD-VYAYSALISGYCKF-GKINKALLLHHEMTS 373 (831)
Q Consensus 330 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~-~~~~~A~~~~~~~~~ 373 (831)
.+.++...+. .|+ ......+...+.+. +.+++|.++|.+..+
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777776665 333 33333444444444 557777777776654
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.67 E-value=8.4e-08 Score=95.39 Aligned_cols=195 Identities=11% Similarity=-0.083 Sum_probs=135.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIE 283 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 283 (831)
+...+..++..+.+.|++++|...|++.++.. +.+...|..+...+.+.|++++|++.++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677888999999999999999999999864 4578889999999999999999999999999864 446778899999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003315 284 GLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINK 363 (831)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 363 (831)
++...|++++|...|++..+.+ |.+...+...+....+. .++.. +..........+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 9999999999999999988753 21211111122222211 11222 2223333333454444444333 3689999
Q ss_pred HHHHHHHHHhCCCCCCHhhH-HHHHHHHHhc-CChHHHHHHHHHHHHC
Q 003315 364 ALLLHHEMTSKGIKTNCGVL-SVILKGLCQK-GMASATIKQFLEFKDM 409 (831)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~-~~~~~a~~~~~~~~~~ 409 (831)
|++.++...+. .|+.... ..+...+.+. +..+++.++|....+.
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999888765 3444333 3333334444 6688899999887653
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=3.8e-07 Score=87.97 Aligned_cols=201 Identities=10% Similarity=-0.026 Sum_probs=145.3
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhc-CC
Q 003315 94 LRKEPKIALSFFEQLKRSGFSHNLCTYAAI-------VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCG-EG 165 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 165 (831)
+.+++..|++.|..+.+.++. ..+.|.-+ ..++.+.++..++...+...+...|.. +.. ... .|
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~-l~a------~~~~~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMST-LNA------RIAIGG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGG-GCC------EEECCT
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhh-hhh------hhccCC
Confidence 578999999999999865433 67888766 455655555666665555555543220 000 000 01
Q ss_pred --------CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003315 166 --------STLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS 237 (831)
Q Consensus 166 --------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 237 (831)
......+...++..+...|++++|.++|+.+...++. +. ....+...+.+.+++++|+..|+...+.. .
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d 166 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-D 166 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-C
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-C
Confidence 0112556778889999999999999999998876633 44 66677778999999999999998765531 1
Q ss_pred CC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003315 238 LN--EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPN--AFAYSTCIEGLCMNGMLDLGYELLLKWEEAD 305 (831)
Q Consensus 238 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (831)
|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...+
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11 23678888999999999999999999985432254 3466777888999999999999999999875
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=1.7e-06 Score=81.94 Aligned_cols=91 Identities=13% Similarity=-0.086 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003315 209 NYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMN 288 (831)
Q Consensus 209 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (831)
..+...+...|++++|...|++.. +|+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 344455555555555555555542 2345555555555555555555555555555432 23344455555555555
Q ss_pred CChhHHHHHHHHHHHC
Q 003315 289 GMLDLGYELLLKWEEA 304 (831)
Q Consensus 289 ~~~~~a~~~~~~~~~~ 304 (831)
|++++|...+++..+.
T Consensus 85 ~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQ 100 (213)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHh
Confidence 5555555555555544
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=1.1e-06 Score=79.22 Aligned_cols=131 Identities=8% Similarity=-0.066 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+..++..+...|++++|+..|+++++..+. +..++..++.++...|++++|...|++..+.. +.+...+..+..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3457788899999999999999999999887644 67788888889999999999999999988764 456778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYST--CIEGLCMNGMLDLGYELLLKWE 302 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~ 302 (831)
.+...|++++|.+.|+++.+.. +.+...+.. .+..+...|++++|...+....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8889999999999998888753 233444433 3333666677777777766543
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=1e-06 Score=75.09 Aligned_cols=110 Identities=14% Similarity=-0.077 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
...+...+..+.+.|++++|...|.+.++..|. ++.+|..++.+|.+.|++++|+..|+++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-------------------NAILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 345667788899999999999999999988554 5678999999999999999999999999
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 197 NRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
++.++. +..++..++.++...|++++|...|++.++.. |.+...+..+.
T Consensus 74 l~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 74 IRLDSK-FIKGYIRKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHhhhh-hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 998755 78899999999999999999999999999864 34555555544
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.60 E-value=2.1e-06 Score=81.28 Aligned_cols=128 Identities=7% Similarity=-0.165 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+..++..+...|++++|+..|+++. .++..++..++.++...|++++|...|++..+.. +.+...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45688889999999999999999874 4578899999999999999999999999999865 557788999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPN----------------AFAYSTCIEGLCMNGMLDLGYELLLKWEEAD 305 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (831)
..|++++|++.|+++.+.. +.+ ...+..+..++...|++++|...+++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999853 222 2577778888888888888888888888764
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.59 E-value=5.4e-06 Score=83.00 Aligned_cols=156 Identities=14% Similarity=0.004 Sum_probs=102.6
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCC---------hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc-----cHHHHHH
Q 003315 529 GLCMGGRVEEAEAFLDGLKGKCLEN---------YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKS-----SCNKLIT 594 (831)
Q Consensus 529 ~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~ 594 (831)
.+...|++++|...+++.....+.. +..++..+...+++++|+..++++.+.....+.. ++..++.
T Consensus 84 ~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 3u3w_A 84 MLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 3444555555555555544433221 1234455555667777777777776643322221 4677777
Q ss_pred HHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHH
Q 003315 595 NLLILRDNNNALKLFKTMIT----L-NAEPS-KSMYDKLIGALCQAEEMEQAQLVFNVLVDK----GLTPH-LVTYTMMI 663 (831)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~ 663 (831)
++...|++++|...++++.+ . +..+. ..++..++.+|.+.|++++|...++++++. +..+. ...|..+.
T Consensus 164 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 243 (293)
T 3u3w_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 77888888888888877773 1 11122 337788999999999999999999988752 22222 56889999
Q ss_pred HHHHHcCC-HHHHHHHHHHHHH
Q 003315 664 HGYCKINC-LREARDVFNDMKQ 684 (831)
Q Consensus 664 ~~~~~~g~-~~~A~~~~~~m~~ 684 (831)
.+|.+.|+ +++|...+++...
T Consensus 244 ~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 244 ECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHH
Confidence 99999995 6999999998864
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=1.2e-06 Score=75.51 Aligned_cols=121 Identities=10% Similarity=-0.021 Sum_probs=95.9
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 003315 166 STLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI 245 (831)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (831)
.+.+..++..++..+...|++++|+..|+++++..+. +..++..+..++...|++++|...|++..+.. +.+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 4557788899999999999999999999999887644 77788888889999999999999999988764 456778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNG 289 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 289 (831)
+...+.+.|++++|++.|++..+.. +.+...+..+..++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 8888889999999999999888753 223445555555555444
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.57 E-value=2e-06 Score=77.53 Aligned_cols=131 Identities=8% Similarity=-0.043 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+..+..++..+...|++++|...+.++++..+. +..++..++..+...|++++|+..++++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 73 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-------------------NAIYYGNRSLAYLRTECYGYALGDATRA 73 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456777888888999999999999998887543 4567889999999999999999999999
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHh
Q 003315 197 NRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV--IVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
++..+. +..++..++.++...|++++|...|++..+.. +.+...+. .++..+.+.|++++|++.++....
T Consensus 74 ~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 74 IELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 988744 78889999999999999999999999998764 34555553 344447788999999999987653
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=2.4e-06 Score=72.49 Aligned_cols=114 Identities=20% Similarity=0.140 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
..++..++..+...|++++|+..|+++.+..+ .+..++..+...+.+.|++++|...|+++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 45677888888888888888888888887653 366777778888888888888888888877654 4466777778888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLC 286 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (831)
+...|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 888888888888888877653 233444444444443
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=1.8e-06 Score=73.99 Aligned_cols=120 Identities=10% Similarity=-0.084 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+..++..+...|++++|+..|+++.+..+. +..++..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 5567888888899999999999999998887643 67778888888888999999999998888754 445777888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGML 291 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 291 (831)
.+.+.|++++|.+.|++..+.. +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888887763 33556666666776666654
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=9.4e-07 Score=77.66 Aligned_cols=104 Identities=9% Similarity=-0.092 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++..+..++..+...|++++|...|.+++...|. ++.+|..++.+|...|++++|+..|++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-------------------~~~~~~~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-------------------NVDYIMGLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 5667788888889999999999999998888554 667888999999999999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY 241 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 241 (831)
+++.++. ++.++..+..+|.+.|++++|...|++.++.. |+..
T Consensus 96 al~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 96 AFALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 9988755 77888889999999999999999999988754 5543
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=8.9e-07 Score=81.04 Aligned_cols=120 Identities=8% Similarity=-0.011 Sum_probs=75.6
Q ss_pred cCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhH
Q 003315 129 CCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSC 208 (831)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 208 (831)
..|++++|...+...+...|. ++.++..++..|...|++++|+..|+++++.++. +...+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 81 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-------------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELY 81 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHH
Confidence 345566666666666665333 3456667777777777777777777777666533 55566
Q ss_pred HHHHHH-HHHcCCh--hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 209 NYFMNQ-LVECGKV--DMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 209 ~~l~~~-~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
..+..+ +...|++ ++|...|++..+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666 5666776 77777777766653 334566666667777777777777777777665
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=9.1e-06 Score=81.33 Aligned_cols=165 Identities=8% Similarity=0.011 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh-----hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---CC--hh
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSI-----CSCNYFMNQLVECGKVDMALAVYQHLKRLGLS---LN--EY 241 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~--~~ 241 (831)
.+...+..+...|++++|+..+.+.++....... ..+..+...+...|++++|+..|++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667777888888888888877765432110 12233445556666777777777766542111 11 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-Ch
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKA-GVTPN-----AFAYSTCIEGLCMNGMLDLGYELLLKWEEAD----IPL-SA 310 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 310 (831)
+++.+...|...|++++|+..|+++.+. ...|+ ..++..+...|...|++++|...+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5666666677777777777777666521 00111 1355555555666666666666655554321 000 13
Q ss_pred hhHHHHHHHHHhcCCHhHH-HHHHHHH
Q 003315 311 FAYTVVIRWFCDQNKLEKA-ECVLLHM 336 (831)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A-~~~~~~~ 336 (831)
.++..+...|.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3444555555555555555 4444443
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.52 E-value=1.2e-05 Score=80.45 Aligned_cols=163 Identities=9% Similarity=0.038 Sum_probs=89.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCC-cCh----hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-CC----hhhH
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFV-WSI----CSCNYFMNQLVECGKVDMALAVYQHLKRLGLS-LN----EYTY 243 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~ 243 (831)
...+..+...|++++|...++++.+.... ++. ..+..+...+...+++++|+..|++..+.... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34466777888888888888887764322 121 12234555566666777777777777763222 22 1256
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCChhh
Q 003315 244 VIVIKALCKKGSMQEAVEVFLEMEKA-----GVTPN-AFAYSTCIEGLCMNGMLDLGYELLLKWEEA----DI-PLSAFA 312 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 312 (831)
+.+...|...|++++|+..|+++++. +..+. ..++..+...|.+.|++++|...+++.++. +. ..-..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 77777777777777777777776631 11111 124555555566666666666655554432 10 111334
Q ss_pred HHHHHHHHHhcC-CHhHHHHHHHHH
Q 003315 313 YTVVIRWFCDQN-KLEKAECVLLHM 336 (831)
Q Consensus 313 ~~~l~~~~~~~g-~~~~A~~~~~~~ 336 (831)
+..+...+.+.| ++++|.+.+++.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 444445555555 234554444443
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=2.8e-06 Score=72.06 Aligned_cols=97 Identities=23% Similarity=0.178 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003315 206 CSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGL 285 (831)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 285 (831)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344555555555555555555555555432 2344455555555555555555555555555432 22344444444555
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 003315 286 CMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~ 304 (831)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555554443
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=5.2e-07 Score=79.52 Aligned_cols=99 Identities=9% Similarity=0.008 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
+..++..++..+...|++++|+..|++++..++. +...+..+..++...|++++|+..|++.++.. +.++..+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 5567788889999999999999999999888744 78888888899999999999999999988764 456778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 003315 249 ALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~ 269 (831)
++...|++++|++.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988775
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.49 E-value=2.2e-07 Score=95.03 Aligned_cols=122 Identities=13% Similarity=-0.046 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN---------------EYTYVIVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
...+..+...+.+.|++++|...|++.++.. +.+ ...|..+...+.+.|++++|+..|+++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555432 111 244555555555555555555555555544
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHH
Q 003315 270 GVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKA 329 (831)
Q Consensus 270 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (831)
. +.+..++..+..+|...|++++|...|+++++.. |.+..++..+..++.+.|++++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 2234445555555555555555555555555443 33444455555555555555544
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.48 E-value=2.6e-06 Score=87.05 Aligned_cols=133 Identities=13% Similarity=-0.072 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC--------------hhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS--------------ICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
...++..++..|.+.|++++|+..|+++++..+... ..++..+..++.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456888999999999999999999999999875532 578999999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 003315 235 GLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLG-YELLLKWEE 303 (831)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 303 (831)
. +.+...|..+..+|...|++++|+..|+++++.. +.+..++..+..++...|+.+++ ...++.|..
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 5578899999999999999999999999999874 44677888899999999999888 456665543
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.48 E-value=8.8e-07 Score=78.00 Aligned_cols=110 Identities=14% Similarity=0.004 Sum_probs=76.7
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003315 192 ILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGV 271 (831)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 271 (831)
.|++++..++ .+...+..+...+...|++++|...|+..++.. +.+...|..+..++...|++++|++.|+++.+..
T Consensus 9 ~~~~al~~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISS-DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCH-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 3455555542 255566667777778888888888888777654 4466677777777777888888888888777653
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 272 TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 272 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
+.+...+..+..++...|++++|...|++.++.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 335566677777777777777777777777665
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.47 E-value=3e-06 Score=72.94 Aligned_cols=117 Identities=4% Similarity=-0.088 Sum_probs=79.2
Q ss_pred CChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003315 82 LNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEAL 161 (831)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (831)
.......+..+...|+++.|...|+.+.+.. +.+...+..++.++...|++++|...+.++++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------------ 82 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT------------ 82 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------------
Confidence 3445555666677788888888888877553 236777777777777788888888777777766433
Q ss_pred hcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC
Q 003315 162 CGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECG 219 (831)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (831)
+..++..++.++...|++++|+..|+++.+..+. +...+..+..++...|
T Consensus 83 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 -------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred -------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 4456677777777777777777777777766533 4455555555555443
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.47 E-value=3.7e-06 Score=71.98 Aligned_cols=120 Identities=11% Similarity=-0.120 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++..+..++..+...|++++|...+.+++...+. +..++..++..+...|++++|+..+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 71 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-------------------NAVYFCNRAAAYSKLGNYAGAVQDCER 71 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-------------------CHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 4556666777777777777777777777766333 345667777777788888888888887
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSM 256 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (831)
+.+..+. +...+..++.++...|++++|...|++..+.. +.+...+..+...+.+.|++
T Consensus 72 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 72 AICIDPA-YSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHhcCcc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 7776533 56677777777888888888888888777654 34566666677677666654
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.47 E-value=2e-06 Score=78.71 Aligned_cols=122 Identities=11% Similarity=0.003 Sum_probs=88.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCh--H
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA-LCKKGSM--Q 257 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 257 (831)
...|++++|+..++++++..+. +..++..+..++...|++++|...|++..+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4567888888888888777643 67778888888888888888888888877654 3466677777777 6677887 8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003315 258 EAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEAD 305 (831)
Q Consensus 258 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (831)
+|+..|+++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888887753 3345667777777888888888888888877764
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=4.1e-06 Score=71.38 Aligned_cols=99 Identities=10% Similarity=-0.011 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+..++..+.+.|++++|+..|+++++.++. +...+..+..++.+.|++++|+..|++.++.. +.+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3457778899999999999999999999988744 78888999999999999999999999988865 456778888999
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 003315 249 ALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~ 269 (831)
.+...|++++|++.|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999988875
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.45 E-value=1.7e-05 Score=79.36 Aligned_cols=174 Identities=13% Similarity=0.012 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
...+...+..+...|++++|...+.+.++..+... ... .....+..++..+...|++++|+..++++
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 141 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-EFQ------------QFLQWQYYVAAYVLKKVDYEYCILELKKL 141 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH-HHH------------HHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh-hHH------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 34555677788899999999999998887644311 110 12234556788888999999999999998
Q ss_pred HHcCCC---cC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHH
Q 003315 197 NRRGFV---WS--ICSCNYFMNQLVECGKVDMALAVYQHLKRL--GLSLN----EYTYVIVIKALCKKGSMQEAVEVFLE 265 (831)
Q Consensus 197 ~~~~~~---~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (831)
++.... +. ..+++.++..|...|++++|...|++..+. ..+.+ ..+++.+...|.+.|++++|++.+++
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 142 LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 864322 11 447889999999999999999999998731 11111 25888899999999999999999999
Q ss_pred HHhCC----CCC-CHHHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 003315 266 MEKAG----VTP-NAFAYSTCIEGLCMNGMLDLG-YELLLKWEE 303 (831)
Q Consensus 266 m~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 303 (831)
..+.. ... -..+|..+..+|.+.|++++| ...+++...
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 87642 111 156788899999999999999 777877654
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.44 E-value=9.6e-05 Score=73.52 Aligned_cols=190 Identities=11% Similarity=-0.082 Sum_probs=140.2
Q ss_pred HHHcCChh-HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC----------hhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 180 YVSVGMFD-EGIDILFQINRRGFVWSICSCNYFMNQLVECGK----------VDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 180 ~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
..+.|.++ +|+..++.++..++. +..+++.-..++...+. +++++.+++.++... |.+..+|+.-..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34566665 799999999998865 67778777666665544 578889999888764 567788888777
Q ss_pred HHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--
Q 003315 249 ALCKKG--SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGM-LDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ-- 323 (831)
Q Consensus 249 ~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 323 (831)
.+.+.| .++++++.++++.+.. +-|..+|+.-.-++...|. ++++++.+.++++.+ +-|..+|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 777777 4889999999999875 4577788887777778888 588999999999876 66777777776666554
Q ss_pred ------------CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhC
Q 003315 324 ------------NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKF-----------GKINKALLLHHEMTSK 374 (831)
Q Consensus 324 ------------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------~~~~~A~~~~~~~~~~ 374 (831)
+.++++.+.+.......+. |...|+-+-..+.+. +.++++++.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 4577888888888877555 777777655555544 3355666666666654
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.44 E-value=8.7e-05 Score=73.80 Aligned_cols=221 Identities=10% Similarity=-0.049 Sum_probs=158.1
Q ss_pred CCCh-hhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHH
Q 003315 130 CGWQ-KKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGM----------FDEGIDILFQINR 198 (831)
Q Consensus 130 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~ 198 (831)
.|.+ ++|+.+...++..+|. +..+|+.-..++...+. +++++.+++.++.
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~-------------------~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~ 102 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPD-------------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR 102 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTT-------------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCch-------------------hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence 3433 3677777777777554 33344444444433333 6899999999999
Q ss_pred cCCCcChhhHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCH
Q 003315 199 RGFVWSICSCNYFMNQLVECGK--VDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS-MQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~ 275 (831)
.++. +..+|+.-..++...++ +++++.+++.+.+.. +.|..+|+.-...+...|. ++++++.++++.+.. +-|.
T Consensus 103 ~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~ 179 (331)
T 3dss_A 103 VNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNY 179 (331)
T ss_dssp HCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCH
T ss_pred hCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCH
Confidence 8866 88899999999988884 899999999999875 5688888888888888888 599999999999875 4577
Q ss_pred HHHHHHHHHHHhc--------------CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------CCHhHHH
Q 003315 276 FAYSTCIEGLCMN--------------GMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ-----------NKLEKAE 330 (831)
Q Consensus 276 ~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~ 330 (831)
.+|+.....+... +.++++++.+.+.+..+ |.|..+|+.+--.+.+. +.++++.
T Consensus 180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 7888777766655 45788999999999876 77888887665555555 4578999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHhC
Q 003315 331 CVLLHMEKQGVVPDVYAYSALISG---YCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~~ 374 (831)
+.++++.+..+. +...+.+++.. ....+..+++...+.++.+.
T Consensus 259 ~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 259 ESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 999999986433 33333222221 11345566666677766654
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.43 E-value=3e-06 Score=72.22 Aligned_cols=106 Identities=11% Similarity=-0.040 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCC----hhhH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL--SLN----EYTY 243 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~ 243 (831)
..++..++..+.+.|++++|+..|+++++.++. +..++..+..+|.+.|++++|+..|++.++... .++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 446778999999999999999999999998755 788899999999999999999999999886421 111 1356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 003315 244 VIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAY 278 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 278 (831)
..+...+...|++++|++.|++.++. .||....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 67777888889999999999888765 4565443
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.42 E-value=1.8e-06 Score=81.02 Aligned_cols=120 Identities=13% Similarity=-0.063 Sum_probs=58.2
Q ss_pred HcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCCh
Q 003315 182 SVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL----GL-SLNEYTYVIVIKALCKKGSM 256 (831)
Q Consensus 182 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 256 (831)
..|++++|...++.+.. .+.....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664443322 22234455666666666666666666666665541 10 11223455555566666666
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003315 257 QEAVEVFLEMEKA----GVTP--NAFAYSTCIEGLCMNGMLDLGYELLLKWE 302 (831)
Q Consensus 257 ~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (831)
++|.+.+++..+. +-.| ...++..+...+...|++++|...+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666655442 1011 12234444444555555555555554443
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.38 E-value=3.9e-06 Score=73.35 Aligned_cols=99 Identities=11% Similarity=-0.041 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
+...+..++..+.+.|++++|+..|++++..++. +...+..+..++.+.|++++|+..|++.++.. +.++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 4567778888999999999999999999988754 78888889999999999999999999988765 456778888889
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 003315 249 ALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~ 269 (831)
.+...|++++|++.|+++.+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988775
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.38 E-value=4.4e-06 Score=78.31 Aligned_cols=161 Identities=8% Similarity=-0.033 Sum_probs=112.5
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHH
Q 003315 94 LRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLS 173 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (831)
..|+++.|.+.++.+... ......++..++.++...|++++|...+.+.+....... ..+....++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~ 69 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG-------------DHTAEHRAL 69 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-------------CHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC-------------CcHHHHHHH
Confidence 468899999966655432 234678888999999999999999999998877532211 112245678
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHc---CC-C--cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCC----hhh
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRR---GF-V--WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLN----EYT 242 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~ 242 (831)
..++..|...|++++|+..++++++. .. . ....++..+..++...|++++|...+++..+... ..+ ..+
T Consensus 70 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 70 HQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 89999999999999999999987764 11 1 1244567778888888899988888888764210 112 223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 243 YVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
+..+...+...|++++|.+.+++..+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56677777788888888888877654
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.37 E-value=5.6e-07 Score=84.17 Aligned_cols=119 Identities=13% Similarity=0.015 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 207 SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNE----------------YTYVIVIKALCKKGSMQEAVEVFLEMEKAG 270 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 270 (831)
.+..+...+...|++++|...|++.++.. +.++ ..|..+...+.+.|++++|+..++++.+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34455555555566666666665555432 1111 344444444455555555555555544432
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 271 VTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 271 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
+.+...+..+..++...|++++|...|++..+.. |.+..++..+..++...++.++
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 2233444444444444444444444444444432 3334444444444444433333
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=1.4e-05 Score=66.72 Aligned_cols=99 Identities=14% Similarity=-0.041 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
...+..++..+...|++++|+..|+++....+. +...+..+..++...|++++|...+++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 456778888888888999999988888877643 67777888888888888888888888887754 3456777888888
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 003315 250 LCKKGSMQEAVEVFLEMEKAG 270 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~ 270 (831)
+...|++++|.+.+++..+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 888888888888888887653
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.36 E-value=4.6e-06 Score=72.84 Aligned_cols=99 Identities=11% Similarity=-0.030 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
+...+..++..+...|++++|...+..++...|. ++.++..++.+|...|++++|+..|++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-------------------DARYFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-------------------cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455666777778888888888888887777543 556777888888888888888888888
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
+++.++. +...+..+..++...|++++|...|+..++.
T Consensus 78 al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 78 GALMDIN-EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8887644 6677777888888888888888888887764
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=7.1e-06 Score=69.86 Aligned_cols=94 Identities=20% Similarity=0.035 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 003315 243 YVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD 322 (831)
Q Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (831)
+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++.++.+ |.+...+..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2233344444444444444444444444444432 3334444444444455
Q ss_pred cCCHhHHHHHHHHHHH
Q 003315 323 QNKLEKAECVLLHMEK 338 (831)
Q Consensus 323 ~g~~~~A~~~~~~~~~ 338 (831)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555544444
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.31 E-value=1.3e-05 Score=71.93 Aligned_cols=100 Identities=10% Similarity=-0.057 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
.....+..++..+...|++++|+..|+++++..+. +...+..+..++.+.|++++|+..|++.++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45678889999999999999999999999998754 78889999999999999999999999999875 45688899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 003315 248 KALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
..+.+.|++++|++.|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999876
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=4.9e-06 Score=70.17 Aligned_cols=96 Identities=7% Similarity=-0.059 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+..++..+.+.|++++|+..|+++++..+. +..++..+..++...|++++|+..|++.++.. +.+...+..+...+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3567788888999999999999999988754 78888889999999999999999999988765 446778888888899
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003315 252 KKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~ 269 (831)
+.|++++|+..|+++++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988865
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=2e-05 Score=65.79 Aligned_cols=93 Identities=20% Similarity=0.103 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM 287 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 287 (831)
+..++..+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3334444444444444444444444322 2233344444444444444444444444443321 1123333333333333
Q ss_pred cCChhHHHHHHHHHH
Q 003315 288 NGMLDLGYELLLKWE 302 (831)
Q Consensus 288 ~~~~~~a~~~~~~~~ 302 (831)
.|++++|...+++..
T Consensus 85 ~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 85 LNRFEEAKRTYEEGL 99 (118)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 344444443333333
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=6.4e-06 Score=70.50 Aligned_cols=112 Identities=8% Similarity=0.064 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCC----hhhH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL--SLN----EYTY 243 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~ 243 (831)
...+..++..+...|++++|+..|+++.+..+. +..++..+...+...|++++|...|++..+... .++ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456778888999999999999999998887643 677788888889999999999999988876431 111 6677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003315 244 VIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG 284 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (831)
..+...+.+.|++++|.+.|+++.+. .|+......+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 78888888889999999998888875 3555555444433
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=1.1e-05 Score=75.13 Aligned_cols=132 Identities=8% Similarity=-0.156 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC---------------hhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS---------------ICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
...+..++..+...|++++|+..|+++++..+... ..++..+..++.+.|++++|+..++..++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45677889999999999999999999998754311 267888999999999999999999999986
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHH
Q 003315 235 GLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGY-ELLLKWEE 303 (831)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 303 (831)
. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+..++...++.+++. ..+..+..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 4577889999999999999999999999998864 345667777777777777666655 44444433
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=1.5e-05 Score=71.66 Aligned_cols=100 Identities=6% Similarity=-0.138 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
+...+..++.++...|++++|...|.++++..+. ++.++..++.+|...|++++|+..|++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 70 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-------------------NPIYLSNRAAAYSASGQHEKAAEDAEL 70 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-------------------CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4556677777777788888888888877776443 456777888888888888888888888
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
+++.++. +..++..+..++...|++++|...|++.++..
T Consensus 71 al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 71 ATVVDPK-YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 8877644 67777778888888888888888888877643
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=1.7e-05 Score=68.63 Aligned_cols=100 Identities=9% Similarity=-0.075 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
.++..+..++..+...|++++|+..|.++++..+. +...+..+..++...|++++|...|++.++.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 35677888889999999999999999998887644 67788888888889999999999998888764 44677888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 003315 248 KALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
..+...|++++|+..|+++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888889999998888888764
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.23 E-value=7.8e-06 Score=68.87 Aligned_cols=96 Identities=7% Similarity=-0.157 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003315 119 TYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINR 198 (831)
Q Consensus 119 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (831)
.+...+..+...|++++|...+.++++..|. +..++..++.++...|++++|+..|+++++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-------------------REEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456777888999999999999999988654 567889999999999999999999999999
Q ss_pred cCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 199 RGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
.++. +..++..+..++...|++++|+..|++.++.
T Consensus 80 l~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 80 LDPK-DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9855 7888999999999999999999999998874
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.23 E-value=1.6e-05 Score=68.76 Aligned_cols=100 Identities=9% Similarity=-0.057 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHH
Q 003315 115 HNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILF 194 (831)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 194 (831)
.++..+..++..+...|++++|...+..++...|. ++.++..++.++...|++++|+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-------------------VAVYYTNRALCYLKMQQPEQALADCR 67 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-------------------cHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 46788888888899999999999999888887543 45678888999999999999999999
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 195 QINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
++++.++. +..++..+..++...|++++|...|++..+.
T Consensus 68 ~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 68 RALELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCch-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 98888744 7778888889999999999999999888764
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.22 E-value=1.3e-05 Score=66.24 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|++.|+++.+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3334444444444444444444444322 22333344444444444444444444444443
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.22 E-value=1.9e-05 Score=67.13 Aligned_cols=108 Identities=6% Similarity=-0.097 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
...+..++..+.+.|++++|...|.++++..|. ++.+|..++.+|...|++++|+..++++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-------------------~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-------------------NITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------CHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 345667888999999999999999999988654 5678899999999999999999999999
Q ss_pred HHcCCCcC------hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 003315 197 NRRGFVWS------ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI 245 (831)
Q Consensus 197 ~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (831)
++.++... ..++..++.++...|++++|++.|++.++. .||+.....
T Consensus 69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 87643211 236777888899999999999999998874 466655443
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=9.6e-06 Score=67.06 Aligned_cols=99 Identities=13% Similarity=-0.043 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--ChhhHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSL--NEYTYVIVI 247 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 247 (831)
..++..++..+...|++++|+..|+++++..+. +..++..+..++...|++++|...|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 345678899999999999999999999988744 77888999999999999999999999999864 34 578899999
Q ss_pred HHHHhc-CChHHHHHHHHHHHhCC
Q 003315 248 KALCKK-GSMQEAVEVFLEMEKAG 270 (831)
Q Consensus 248 ~~~~~~-g~~~~A~~~~~~m~~~~ 270 (831)
..+.+. |++++|++.+++..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999 99999999999998763
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=3.6e-05 Score=67.48 Aligned_cols=97 Identities=13% Similarity=-0.104 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003315 240 EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPN----AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV 315 (831)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (831)
...+..+...+...|++++|++.|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 344445555555555555555555555543 233 3444445555555555555555555555442 334455555
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 316 VIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
+..++...|++++|...|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555555554
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=4e-05 Score=67.20 Aligned_cols=100 Identities=10% Similarity=-0.090 Sum_probs=82.7
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS---ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV 244 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 244 (831)
.....+..++..+...|++++|+..|+++++..+. + ...+..+..++...|++++|+..|++..+.. +.+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 45678888999999999999999999999887533 2 6677888888899999999999998888754 34677888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 245 IVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 245 ~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
.+...+...|++++|.+.|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8888888899999999999888875
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.14 E-value=3.5e-05 Score=65.71 Aligned_cols=95 Identities=8% Similarity=0.057 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh---hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---hhhHHHH
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSI---CSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN---EYTYVIV 246 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l 246 (831)
+..++..+...|++++|+..|+++++..+. +. .++..+..++.+.|++++|...|+.+.+.. +.+ +..+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 456777888899999999999988887643 33 467778888888899999999988888754 233 5567778
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
...+.+.|++++|...|+++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888888775
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=9.9e-05 Score=78.64 Aligned_cols=199 Identities=10% Similarity=-0.036 Sum_probs=128.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh----------------hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSI----------------CSCNYFMNQLVECGKVDMALAVYQHLKRLGLS 237 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 237 (831)
..-++.+.+.|++++|++.|.++++....... .++..++..|...|++++|.+.+..+.+....
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35567788999999999999999887543211 23667888888888888888888876642101
Q ss_pred -CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--C
Q 003315 238 -LNE----YTYVIVIKALCKKGSMQEAVEVFLEMEKA----GVTPN-AFAYSTCIEGLCMNGMLDLGYELLLKWEEA--D 305 (831)
Q Consensus 238 -~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~ 305 (831)
++. ...+.+...+...|+++.|.+++++.... +..+. ..++..+...+...|++++|..+++++... +
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 111 12233333444567888888888776542 22222 346677778888888888888888776543 1
Q ss_pred ---CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC--C-CC-C--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 306 ---IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG--V-VP-D--VYAYSALISGYCKFGKINKALLLHHEMT 372 (831)
Q Consensus 306 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p-~--~~~~~~li~~~~~~~~~~~A~~~~~~~~ 372 (831)
.+....++..+++.|...|++++|...+++..... . .| . ...+..+...+...+++++|...|.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11124567777788888888888888877765421 1 11 1 2345555666667777777777666654
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=2.6e-05 Score=66.52 Aligned_cols=113 Identities=7% Similarity=-0.140 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+..+..++..+...|++++|...+.+++...+. ++.++..++..|...|++++|+..++++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-------------------NMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-------------------cHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456788888999999999999999998887443 4567889999999999999999999998
Q ss_pred HHcCCC--cC----hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 197 NRRGFV--WS----ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 197 ~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
.+..+. ++ ..++..++.++...|++++|...|+...+.. |+...+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 877532 11 6778889999999999999999999998854 5666655555443
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=6.4e-05 Score=64.02 Aligned_cols=99 Identities=9% Similarity=-0.080 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 003315 120 YAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR 199 (831)
Q Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (831)
+..++..+...|++++|...+..+++..|. ....+.++..++.++...|++++|+..|+++++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN----------------GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS----------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC----------------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456777888999999999999998887554 1223467889999999999999999999999987
Q ss_pred CCCcC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003315 200 GFVWS---ICSCNYFMNQLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 200 ~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
.+. + ..++..+..++...|++++|...|+.+.+..
T Consensus 69 ~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 69 YPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp CTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 644 4 5678888999999999999999999998764
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.03 E-value=5.1e-05 Score=67.90 Aligned_cols=100 Identities=14% Similarity=-0.009 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--------CC---------CcChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRR--------GF---------VWSICSCNYFMNQLVECGKVDMALAVYQHL 231 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 231 (831)
....+...+..+.+.|++++|+..|.++++. .+ +.+..++..+..++.+.|++++|+..++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456778999999999999999999998875 11 113355666777777777777777777777
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 232 KRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
++.. +.++..|..+..++...|++++|+..|++.++.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 7654 445667777777777777777777777777765
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.03 E-value=4.9e-05 Score=81.17 Aligned_cols=139 Identities=9% Similarity=-0.071 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+..++..|.+.|++++|+..|+++++..+..... ..+... ++.. .....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~----~~~~----~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL-------------SEKESK----ASES----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-------------CHHHHH----HHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC-------------ChHHHH----HHHH----HHHHHHHHHHH
Confidence 34567788888888888888888888888764332100 000000 0000 01234444444
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
+|.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++++.. |.+..++..+..++.+.+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544432 2234444444555555555555555555554443 3344455555555555555554
Q ss_pred HH
Q 003315 329 AE 330 (831)
Q Consensus 329 A~ 330 (831)
+.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 178
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=6.6e-05 Score=65.01 Aligned_cols=97 Identities=14% Similarity=0.022 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc------Ch-----hhHHHHHHHHHHcCChhHHHHHHHHHHhc-----
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW------SI-----CSCNYFMNQLVECGKVDMALAVYQHLKRL----- 234 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 234 (831)
..+...+..+...|++++|+..|+++++..+.. +. .+|+.+..++.+.|++++|+..|++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 456678888999999999999999999876441 11 26666777777777777777777776664
Q ss_pred --CCCCChhhH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 235 --GLSLNEYTY----VIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 235 --~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
. +.+...| .....++...|++++|+..|++.++
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 2234455 6666666666666666666666654
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.01 E-value=3.7e-05 Score=68.61 Aligned_cols=134 Identities=11% Similarity=-0.043 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-cC----hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCC---
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV-WS----ICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLN--- 239 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~--- 239 (831)
...++..++..+...|++++|+..++++++.... ++ ..++..+...+...|++++|...+++..+... .++
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 3457788999999999999999999987764211 11 13567777888888888888888887664210 011
Q ss_pred -hhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003315 240 -EYTYVIVIKALCKKGSMQEAVEVFLEMEKA----GVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWE 302 (831)
Q Consensus 240 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (831)
...+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 335666667777777777777777776542 1000 01233344444444455544444444433
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=4e-06 Score=90.03 Aligned_cols=124 Identities=10% Similarity=-0.044 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
+..++..+.+.|++++|+..|+++++..+. +..++..+..++.+.|++++|+..|++.++.. +.+...|..+..+|.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334555667788888888888888877644 67777888888888888888888888887764 4456677777888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG--LCMNGMLDLGYELLL 299 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~ 299 (831)
.|++++|++.|+++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888888877653 2223344444443 556666666666665
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.00 E-value=0.0002 Score=78.20 Aligned_cols=135 Identities=8% Similarity=-0.063 Sum_probs=110.1
Q ss_pred ChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHcCC
Q 003315 132 WQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGM----------FDEGIDILFQINRRGF 201 (831)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~ 201 (831)
..++|...+..++...|+ ...+|+.-..++...|+ +++++..++++++.++
T Consensus 44 ~~eeal~~~~~~l~~nP~-------------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p 104 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-------------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP 104 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHCch-------------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 345678888888888655 45577777777777777 9999999999999987
Q ss_pred CcChhhHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHH
Q 003315 202 VWSICSCNYFMNQLVECG--KVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG-SMQEAVEVFLEMEKAGVTPNAFAY 278 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~ 278 (831)
+ +..+|+.-..++.+.+ +++++++.++++.+.+ +.|..+|+.-...+.+.| .++++++.++++.+.. +-|..+|
T Consensus 105 K-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW 181 (567)
T 1dce_A 105 K-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 181 (567)
T ss_dssp T-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHH
T ss_pred C-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHH
Confidence 6 8889999999999999 6799999999999876 567888988888888888 8999999999998875 4577788
Q ss_pred HHHHHHHHhc
Q 003315 279 STCIEGLCMN 288 (831)
Q Consensus 279 ~~l~~~~~~~ 288 (831)
+....++.+.
T Consensus 182 ~~r~~ll~~l 191 (567)
T 1dce_A 182 HYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 8877776654
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=5.5e-06 Score=88.94 Aligned_cols=123 Identities=8% Similarity=-0.028 Sum_probs=98.7
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 003315 122 AIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGF 201 (831)
Q Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 201 (831)
.++..+...|++++|...+.++++..|. +..++..++.+|.+.|++++|+..++++++.++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 71 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS-------------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDK 71 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc-------------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 3445567789999999999999988554 567889999999999999999999999999875
Q ss_pred CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChHHHHHHHHH
Q 003315 202 VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA--LCKKGSMQEAVEVFLE 265 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 265 (831)
. +..++..+..+|...|++++|++.|++..+.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 72 ~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 72 K-YIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4 78889999999999999999999999998864 3355566666666 7888999999999884
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=1.8e-05 Score=66.17 Aligned_cols=87 Identities=14% Similarity=0.030 Sum_probs=65.8
Q ss_pred HcCChhHHHHHHHHHHHcC--CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 003315 182 SVGMFDEGIDILFQINRRG--FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEA 259 (831)
Q Consensus 182 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (831)
..|++++|+..|+++++.+ .+.+..++..+..++...|++++|+..|++.++.. +.+...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3578888889998888874 13356678888888888899999999888888764 45677888888888888888888
Q ss_pred HHHHHHHHhC
Q 003315 260 VEVFLEMEKA 269 (831)
Q Consensus 260 ~~~~~~m~~~ 269 (831)
++.|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888765
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.98 E-value=8e-05 Score=79.55 Aligned_cols=146 Identities=7% Similarity=-0.056 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
....+...+..+...|++++|...|.++++..+............ .......+|..++.+|.+.|++++|+..|++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~----~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA----SESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHH----HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456778889999999999999999999998765421000000000 0011246788889999999999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH-HHHHHH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVE-VFLEME 267 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~ 267 (831)
+++.++. +..++..+..+|...|++++|+..|++.++.. +.+...+..+...+.+.|+++++.+ .+..|.
T Consensus 343 al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 343 ALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888754 77888888889999999999999999888754 3456678888888888888777654 444443
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.97 E-value=8.3e-05 Score=76.68 Aligned_cols=139 Identities=7% Similarity=-0.065 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003315 118 CTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQIN 197 (831)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 197 (831)
..+..++..+...|++++|...|.++++..+...... . .+.. ....+....++..++.+|.+.|++++|+..+++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA-E-DADG-AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS-C-HHHH-GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcccc-C-hHHH-HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4567788888899999999999998887421100000 0 0000 00112245678888888888999999999998888
Q ss_pred HcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003315 198 RRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVE 261 (831)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (831)
+.++. +..++..+..+|...|++++|+..|++..+.. +.+...+..+...+.+.++.+++.+
T Consensus 301 ~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 301 EIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 87644 67788888888888888888888888888754 3456667777777666666665544
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00017 Score=76.85 Aligned_cols=215 Identities=10% Similarity=-0.020 Sum_probs=146.4
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 003315 122 AIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGF 201 (831)
Q Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 201 (831)
.-++.+...|++++|.+.+..+++..+......... ............++..++..|...|++++|.+.+.++.+.-.
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGA--SVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSS--SBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHH--HHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 346677888999999999999888755422110000 000000011234678999999999999999999998765421
Q ss_pred C-cCh----hhHHHHHHHHHHcCChhHHHHHHHHHHhc----CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhC--
Q 003315 202 V-WSI----CSCNYFMNQLVECGKVDMALAVYQHLKRL----GLSLN-EYTYVIVIKALCKKGSMQEAVEVFLEMEKA-- 269 (831)
Q Consensus 202 ~-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-- 269 (831)
. ++. .+.+.+...+...|++++|..+++..... +..+. ..++..++..+...|++++|...++++...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 1 121 12233344445568899999999887642 22222 457788999999999999999999987653
Q ss_pred CC--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 003315 270 GV--TP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEA--DIPLS----AFAYTVVIRWFCDQNKLEKAECVLLHMEK 338 (831)
Q Consensus 270 ~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (831)
+. .+ ...++..++..|...|++++|...+++.... ..+.+ ...+..+...+...|++++|...|.+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 11 2457888899999999999999999987753 12222 34566777888889999999988877754
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.96 E-value=5.7e-05 Score=77.87 Aligned_cols=139 Identities=13% Similarity=-0.006 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
...+..++..+.+.|++++|+..|+++++.-.. .. .... .+...+.. +.+...|..+...
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--~~----------~~~~-------~~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--SR----------AAAE-------DADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HH----------HHSC-------HHHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--Cc----------cccC-------hHHHHHHH-HHHHHHHHHHHHH
Confidence 346778899999999999999999998863100 00 0000 11111100 1223445555555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHH
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKA 329 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (831)
|.+.|++++|++.++++++.. +.+...+..+..+|...|++++|...|+++.+.. |.+...+..+...+...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555432 2234455555555555555555555555555543 33455555555555555555554
Q ss_pred H
Q 003315 330 E 330 (831)
Q Consensus 330 ~ 330 (831)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.96 E-value=8.4e-05 Score=66.43 Aligned_cols=110 Identities=13% Similarity=-0.043 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcC-------CCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKT-------DANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEG 189 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 189 (831)
...+...+..+...|++++|...|...+...+ +..... .. ..+....++..++.+|.+.|++++|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~nla~~~~~~~~~~~A 82 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-VE-------LDRKNIPLYANMSQCYLNIGDLHEA 82 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-HH-------HHHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-HH-------HHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 33455566666667777777777766665411 000000 00 0123557899999999999999999
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003315 190 IDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
+..++++++.++. +..++..++.++...|++++|...|+..++..
T Consensus 83 ~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 83 EETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 9999999998754 88899999999999999999999999999864
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.95 E-value=0.00011 Score=63.67 Aligned_cols=109 Identities=9% Similarity=-0.040 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003315 118 CTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQIN 197 (831)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 197 (831)
..+...+..+...|++++|...|.++++..|..... . .+ ...+.+..+|..++.++.+.|++++|+..|++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~-~----a~--~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE-E----AF--DHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT-S----CC--CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch-h----hh--hhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345566777788889999999999988886652110 0 00 0001234589999999999999999999999999
Q ss_pred Hc-------CCCcChhhH----HHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 198 RR-------GFVWSICSC----NYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 198 ~~-------~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
+. ++. +..+| .....++...|++++|+..|++.++.
T Consensus 85 ~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 85 HYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 98 754 77788 89999999999999999999998864
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.94 E-value=0.00028 Score=77.08 Aligned_cols=177 Identities=10% Similarity=-0.103 Sum_probs=136.5
Q ss_pred HHcCC-hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC----------hhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 181 VSVGM-FDEGIDILFQINRRGFVWSICSCNYFMNQLVECGK----------VDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 181 ~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
.+.|. -++|++.++++++.++. +..+|+.-..++...++ ++++++.++.+.+.. +.+..+|+.-...
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~ 116 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 116 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34444 46889999999998866 77888888888888777 899999999999865 5677888888888
Q ss_pred HHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---
Q 003315 250 LCKKG--SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNG-MLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ--- 323 (831)
Q Consensus 250 ~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 323 (831)
+.+.| +++++++.++++.+.. +-+..+|+.-.-++.+.| .++++++.+.++++.+ +-+..+|+.....+.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccc
Confidence 88888 6799999999999875 457778888888888888 8888999988888876 66777887777776653
Q ss_pred -----------CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003315 324 -----------NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKIN 362 (831)
Q Consensus 324 -----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 362 (831)
+.++++.+.+++.....+. |...|.-+...+.+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 4467777777777766544 6667776666666655533
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.93 E-value=1.5e-05 Score=66.73 Aligned_cols=97 Identities=12% Similarity=0.097 Sum_probs=75.3
Q ss_pred ccCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003315 719 KEDVVDASVFWNEMKEMGI-RPD-VISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAI 796 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~ 796 (831)
.+++++|+..|++..+.+. .|+ ...|..++.++.+.|++++|++.++++++. .+-++.++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4678899999999987541 133 458899999999999999999999999985 2335888999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH
Q 003315 797 ALVDEMSVKGIQGDDYTKSSLE 818 (831)
Q Consensus 797 ~~~~~~~~~g~~pd~~~~~~l~ 818 (831)
+.+++..+ ..|+........
T Consensus 82 ~~~~~al~--~~p~~~~~~~~~ 101 (117)
T 3k9i_A 82 ELLLKIIA--ETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHH--HHCCCHHHHHTH
T ss_pred HHHHHHHH--hCCCcHHHHHHH
Confidence 99999988 456554444333
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.91 E-value=6e-05 Score=67.16 Aligned_cols=97 Identities=11% Similarity=-0.013 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----H
Q 003315 206 CSCNYFMNQLVECGKVDMALAVYQHLKRLGLS-LN----EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGV-TPN----A 275 (831)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~ 275 (831)
.++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|.+.+++..+... .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35666777777778888888877776643100 11 13566666777777777777777777654210 011 2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWE 302 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (831)
.++..+...+...|++++|...+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344445555555566666555555544
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.82 E-value=5.9e-05 Score=76.91 Aligned_cols=143 Identities=10% Similarity=-0.049 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCch-----hHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHH
Q 003315 118 CTYAAIVRILCCCGWQKKLESMLLELVRKKTDANF-----EATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDI 192 (831)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 192 (831)
..+...+..+...|++++|...|.+++...+.... ...+.... ....++..++.+|.+.|++++|+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~-------l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALA-------VKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHH-------HHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHH-------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34555666666677777777777776665332100 00000000 0113566777777777777777777
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCChHHHHHHHHHHHhC
Q 003315 193 LFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA-LCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~ 269 (831)
++++++.++. +..++..+..+|...|++++|+..|++.++.. +.+...+..+... ....+..+++.+.|.+|...
T Consensus 253 ~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 253 CNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7777766533 66667777777777777777777777766542 2233444444433 22344556666666666543
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.81 E-value=4.7e-05 Score=77.67 Aligned_cols=148 Identities=10% Similarity=-0.096 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003315 206 CSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGL 285 (831)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 285 (831)
..+..+...+.+.|++++|...|++.++.. |+... +...|+.+++...+. ..+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 344555555566666666666666655432 22211 112222222222111 12566777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHH
Q 003315 286 CMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISG-YCKFGKINKA 364 (831)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~~~A 364 (831)
.+.|++++|+..+++.++.+ |.+...+..+..+|...|++++|...|++..+..+. +...+..+... ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888877764 556777777888888888888888888877665322 33444444444 2334556666
Q ss_pred HHHHHHHHhC
Q 003315 365 LLLHHEMTSK 374 (831)
Q Consensus 365 ~~~~~~~~~~ 374 (831)
...|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 6677666554
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.79 E-value=0.00016 Score=76.84 Aligned_cols=132 Identities=8% Similarity=-0.001 Sum_probs=95.6
Q ss_pred HHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----C
Q 003315 126 ILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR-----G 200 (831)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~ 200 (831)
.+...|++++|..++.++++... ...+++.+....+++.|+..|...|++++|..++++++.. |
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~-----------~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQE-----------PVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHT-----------TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHH-----------HhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 35579999999999998887632 2223445556789999999999999999999999987643 3
Q ss_pred CC--cChhhHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCC-CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 201 FV--WSICSCNYFMNQLVECGKVDMALAVYQHLKR-----LGLS-LN-EYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 201 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
.. .-..+++.+..+|...|++++|+.+|++.++ .|.. |+ ..+.+.+...+...+.+++|+.+|.++.+
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1234578888889999999999988887664 2311 11 22445566667777888888888888765
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.73 E-value=7e-05 Score=64.67 Aligned_cols=104 Identities=14% Similarity=0.004 Sum_probs=86.4
Q ss_pred cccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 003315 718 CKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNL----------EDGITVFNEISDRGLEPD-TVTYTALLCGY 786 (831)
Q Consensus 718 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~ 786 (831)
+.+.+++|.+.++...+.+ +-+...|..+..++...|++ ++|+..|+++++ +.|+ ..+|..++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 4556888999999888754 44667898899899988775 599999999998 5665 78899999999
Q ss_pred HhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 003315 787 LAKG-----------DLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKARI 826 (831)
Q Consensus 787 ~~~g-----------~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~~~ 826 (831)
...| ++++|++.|++.++ +.|+...|..-+....++..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ka~e 139 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAKAPQ 139 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHhCHh
Confidence 9875 89999999999999 89999998887776666544
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.72 E-value=0.00076 Score=58.01 Aligned_cols=110 Identities=11% Similarity=-0.013 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHhHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD----QNKLEKAE 330 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 330 (831)
++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+.+ ++..+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555555444 22222 3344444444455555555555443 34444555555554 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 003315 331 CVLLHMEKQGVVPDVYAYSALISGYCK----FGKINKALLLHHEMTSKG 375 (831)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~ 375 (831)
+.|++..+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 44455555555555 555555555555555543
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.69 E-value=0.00068 Score=58.33 Aligned_cols=111 Identities=5% Similarity=-0.097 Sum_probs=70.8
Q ss_pred CChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHH
Q 003315 184 GMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK----KGSMQEA 259 (831)
Q Consensus 184 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 259 (831)
+++++|+..|+++.+.+ +..++ +...|...+.+++|...|++..+.| ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777765 22233 5566666666777777777766643 55666666666666 6677777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 003315 260 VEVFLEMEKAGVTPNAFAYSTCIEGLCM----NGMLDLGYELLLKWEEAD 305 (831)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 305 (831)
++.|++..+.| +...+..|...|.. .+++++|...|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776654 45555666666665 566666666666666654
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00035 Score=57.30 Aligned_cols=86 Identities=10% Similarity=0.110 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HH
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGD-------DY 812 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-------~~ 812 (831)
+...|..+...+.+.|++++|++.++++++. .+.++.++..++.+|...|++++|++.+++..+ +.|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 4557788889999999999999999999985 344688899999999999999999999999998 6777 44
Q ss_pred HHHHHHHHHHhccccc
Q 003315 813 TKSSLERGIEKARILQ 828 (831)
Q Consensus 813 ~~~~l~~~~~~~~~~~ 828 (831)
.+..+..++...|+++
T Consensus 80 ~~~~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQ 95 (111)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhHh
Confidence 5566667777766553
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.65 E-value=0.00051 Score=53.84 Aligned_cols=83 Identities=19% Similarity=0.089 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
+..++..++..+...|++++|+..|+++++..+. +..++..+..++.+.|++++|...|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 4567778888888888999999888888877643 66777788888888888888888888887754 345566666666
Q ss_pred HHHhc
Q 003315 249 ALCKK 253 (831)
Q Consensus 249 ~~~~~ 253 (831)
.+.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65543
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=6.3e-05 Score=61.96 Aligned_cols=94 Identities=15% Similarity=0.026 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-------hh
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN-------EY 241 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~ 241 (831)
+..++..++..+...|++++|+..|+++++..+. +..++..+..++.+.|++++|+..|++.++.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 3456778888888999999999999998887644 67778888888888899999999888888753 43 44
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLE 265 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~ 265 (831)
.+..+...+...|+++.|++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 555556666666666655554443
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.64 E-value=0.00047 Score=73.29 Aligned_cols=130 Identities=8% Similarity=-0.038 Sum_probs=101.0
Q ss_pred hccCChhHHHHHHHHHHh---C--CCCC--CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCC
Q 003315 93 SLRKEPKIALSFFEQLKR---S--GFSH--NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEG 165 (831)
Q Consensus 93 ~~~~~~~~A~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (831)
..+|+++.|+.+++++.. . |..| ...+++.++.+|...|++++|..++.+++.- .....+++
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-----------~~~~lG~~ 388 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG-----------YMKLYHHN 388 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHHSCTT
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------HHHHcCCC
Confidence 467999999999998762 2 3332 3567888999999999999999999987654 33444556
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----CCC-c-ChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 166 STLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR-----GFV-W-SICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
.+....+++.|+..|...|++++|..+|+++++. |+. | ...+.+.+..++...+.+++|+.+|..+.+
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667889999999999999999999999997642 432 1 233445666778888999999999998875
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.63 E-value=0.00013 Score=63.06 Aligned_cols=99 Identities=10% Similarity=0.095 Sum_probs=79.6
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCCh----------hHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKV----------DMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
.+.+++++|+..++++++.++. +...+..+..++...+++ ++|+..|++.++.. +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4567899999999999999855 888999899999888765 59999999999875 44677899999999
Q ss_pred HhcC-----------ChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 251 CKKG-----------SMQEAVEVFLEMEKAGVTPNAFAYSTCIE 283 (831)
Q Consensus 251 ~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 283 (831)
...| ++++|++.|+++++. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8764 789999999998876 576655544444
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.54 E-value=0.00042 Score=57.41 Aligned_cols=100 Identities=12% Similarity=0.069 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 724 DASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMS 803 (831)
Q Consensus 724 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 803 (831)
+|+..+++..+.. +.+...|..+..++.+.|++++|++.++++++. .+.+...|..++.+|...|++++|.+.+++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777776543 345678899999999999999999999999985 23357889999999999999999999999988
Q ss_pred hCCC-CCCHHHHHHHHHHHHhcc
Q 003315 804 VKGI-QGDDYTKSSLERGIEKAR 825 (831)
Q Consensus 804 ~~g~-~pd~~~~~~l~~~~~~~~ 825 (831)
+..- .++......+...+.+.+
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHhc
Confidence 7311 134455555555555444
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.46 E-value=0.00076 Score=55.84 Aligned_cols=79 Identities=13% Similarity=0.011 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 188 EGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEME 267 (831)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 267 (831)
+|+..|+++++.++. +...+..+..++...|++++|+..|++.++.. +.+...|..+...+...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466666766666533 56666777777777777777777777776653 3445566667777777777777777777665
Q ss_pred h
Q 003315 268 K 268 (831)
Q Consensus 268 ~ 268 (831)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.44 E-value=0.00091 Score=52.33 Aligned_cols=83 Identities=10% Similarity=-0.033 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++..+..++..+...|++++|...+.++++..+. ++.++..++.++...|++++|+..|++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------------------NAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------------------CHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4567778888888899999999999988877443 456778899999999999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHc
Q 003315 196 INRRGFVWSICSCNYFMNQLVEC 218 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~ 218 (831)
+.+..+. +..++..+..++.+.
T Consensus 69 a~~~~p~-~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 69 ALELDPN-NAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHhcCCC-CHHHHHHHHHHHHhc
Confidence 8887644 666676666666543
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.31 E-value=0.0017 Score=55.26 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=81.9
Q ss_pred ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHH
Q 003315 719 KEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQ---NLEDGITVFNEISDRGLEP--DTVTYTALLCGYLAKGDLD 793 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--d~~~~~~l~~~~~~~g~~~ 793 (831)
.+....+.+-|.+..+.+. ++..+...+.+++++.+ +.++++.++++..+.. .| ....+..|.-+|.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 4456677778887776663 78888889999999998 6669999999999853 35 3567788888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 794 RAIALVDEMSVKGIQGDDYTKSSLERGIEK 823 (831)
Q Consensus 794 ~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 823 (831)
+|+++++.+++ ++|+..--..+...+.+
T Consensus 89 ~A~~y~~~lL~--ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 89 KALKYVRGLLQ--TEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCCHHHHHHHHHHHH
Confidence 99999999999 89998877776665544
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.25 E-value=0.0013 Score=52.80 Aligned_cols=86 Identities=20% Similarity=0.102 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKG-IQGDDYTKSSLE 818 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~pd~~~~~~l~ 818 (831)
+...+..+..++.+.|++++|++.|+++++. -+.+...|..++.+|...|++++|.+.+++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET-DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 4568889999999999999999999999985 23357789999999999999999999999988632 135666666666
Q ss_pred HHHHhccc
Q 003315 819 RGIEKARI 826 (831)
Q Consensus 819 ~~~~~~~~ 826 (831)
..+.+.+.
T Consensus 85 ~~l~~~~~ 92 (100)
T 3ma5_A 85 DAKLKAEG 92 (100)
T ss_dssp HHHHHHHT
T ss_pred HHHHHccc
Confidence 66665554
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.23 E-value=0.0014 Score=52.57 Aligned_cols=64 Identities=6% Similarity=-0.040 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
++.++..++..|...|++++|+..|+++++.++. +..++..+..++...|++++|...|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5567778888888888888888888888877644 666777788888888888888888877664
No 210
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.02 E-value=0.69 Score=52.25 Aligned_cols=310 Identities=10% Similarity=0.031 Sum_probs=161.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC--------CC---hHHHHHH
Q 003315 494 AFAQYGAVQKAFDLLNYMKRHGLEPN--FVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL--------EN---YSAMING 560 (831)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~---~~~l~~~ 560 (831)
+....|+.++++.+++..+..+-..+ ...-..+.-+....|..+++..++......+. +. -..++-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34556777777776666543210112 22233333344556655566666655443221 11 1223333
Q ss_pred HHhcCC-HHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCC
Q 003315 561 YCKTGH-TKEAFQLFMRLSNQGVL-VKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIG--ALCQAEE 636 (831)
Q Consensus 561 ~~~~g~-~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~ 636 (831)
++-.|. -+++.+.+..+...... .....-..++..++-.|+.+....++..+.+. .+..+...+.- ++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCC
Confidence 333332 24566666665543211 00112223344455667777777777776653 23333333333 4447789
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCc
Q 003315 637 MEQAQLVFNVLVDKGLTPHLVTY--TMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPD 714 (831)
Q Consensus 637 ~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 714 (831)
.+.+..+.+.+... ..|....- .++.-+|+..|+.....+++..+.+. ++..+-...+-+++.+..
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~-------- 607 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLL-------- 607 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTS--------
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhcc--------
Confidence 99888888888763 12222222 23445677888877777788888764 222233333444443221
Q ss_pred hhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--C-
Q 003315 715 ALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNL-EDGITVFNEISDRGLEPDTVTYTALLCGYLAK--G- 790 (831)
Q Consensus 715 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~--g- 790 (831)
++.+.+.++++.+.+.+ .|....-..+.-+....|+. .+|+..+..+.. .+|..+...-+.++..- |
T Consensus 608 -----g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 608 -----RDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp -----SSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTC
T ss_pred -----CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCC
Confidence 22233455554444433 45444444555555556654 688999999973 56666654444444433 2
Q ss_pred ------CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcccc
Q 003315 791 ------DLDRAIALVDEMSV-KGIQGDDYTKSSLERGIEKARIL 827 (831)
Q Consensus 791 ------~~~~A~~~~~~~~~-~g~~pd~~~~~~l~~~~~~~~~~ 827 (831)
++..-++.+.+... +.-+|+......+..|+..+|+-
T Consensus 679 nna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 679 TEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred ccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 34444444444433 23356677777888889888873
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.95 E-value=4.2e-06 Score=84.20 Aligned_cols=390 Identities=11% Similarity=0.047 Sum_probs=178.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 003315 313 YTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQ 392 (831)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 392 (831)
|..++....+.|.+++-.+.+....+..- +...=+.|+-+|++.++..+..+++ ..||......+..-|..
T Consensus 86 y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~ 156 (624)
T 3lvg_A 86 YMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYD 156 (624)
T ss_dssp SSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHH
Confidence 33444444444444444444433333211 2222334444555555444332221 12344444445555555
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHH
Q 003315 393 KGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDL 472 (831)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 472 (831)
.|.++.|.-+|..+ .-|..|..++.+.|++..|.+.-++. .++.+|..+-.+|...+.+.-|...
T Consensus 157 e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 157 EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp SCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred ccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHh
Confidence 55554444333322 22223444445555555554432221 2555666666666666666655444
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC---
Q 003315 473 FKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGK--- 549 (831)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 549 (831)
--.+.- .......++..|...|.+++.+.+++..+... .....+++.+.-.|+|- +.++..+.++....+
T Consensus 222 GLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNi 294 (624)
T 3lvg_A 222 GLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI 294 (624)
T ss_dssp HHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCC
T ss_pred cchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccH
Confidence 333331 11122234455666666666666666665332 34555666666566554 233333333322111
Q ss_pred --------CCCChHHHHHHHHhcCCHHHHHHHH--------------------------HHHHhCCCCCCcccHHHHHHH
Q 003315 550 --------CLENYSAMINGYCKTGHTKEAFQLF--------------------------MRLSNQGVLVKKSSCNKLITN 595 (831)
Q Consensus 550 --------~~~~~~~l~~~~~~~g~~~~A~~~~--------------------------~~~~~~~~~~~~~~~~~l~~~ 595 (831)
....|..++..|.+...++.|.... -++..--..-.+.-++.++.+
T Consensus 295 pKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~v 374 (624)
T 3lvg_A 295 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMV 374 (624)
T ss_dssp TTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHh
Confidence 1112666666666666666554221 111111111122333444444
Q ss_pred HHhcCCHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHH------------HHHHHCCCC
Q 003315 596 LLILRDNNNALKLFKTMITL----------NAEPSKSMYDKLIGALCQAEEMEQAQLVF------------NVLVDKGLT 653 (831)
Q Consensus 596 ~~~~~~~~~a~~~~~~~~~~----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~------------~~~~~~~~~ 653 (831)
+...=|...+.+++++.-.. ....+..+-.++-+.|....+++.-+... +++.++
T Consensus 375 L~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH--- 451 (624)
T 3lvg_A 375 LSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH--- 451 (624)
T ss_dssp HCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---
T ss_pred ccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---
Confidence 44333444444444332110 01234556666777777777766544322 222221
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHH
Q 003315 654 PHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMK 733 (831)
Q Consensus 654 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 733 (831)
+-...-.+-...|.+.+++++++.+.++= ++-.|.. ... ...++.+-+.++++-..
T Consensus 452 eL~eFRrIAA~LYkkn~rw~qsi~l~KkD---klykDAi------etA---------------a~S~~~elaeeLL~yFv 507 (624)
T 3lvg_A 452 ELIEFRRIAAYLFKGNNRWKQSVELCKKD---SLYKDAM------QYA---------------SESKDTELAEELLQWFL 507 (624)
T ss_dssp SSHHHHHHHHHHHHTTCHHHHHSSCSSTT---CCTTGGG------TTT---------------TTCCCTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHhc---ccHHHHH------HHH---------------HHcCCHHHHHHHHHHHH
Confidence 11222233345566777777777654321 1222211 111 12345666666766666
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003315 734 EMGIRPDVISYTVLIAKLCNTQNLEDGITV 763 (831)
Q Consensus 734 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 763 (831)
+.| +..++.+.+..|...=++|.++++
T Consensus 508 ~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 508 QEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 655 445666666666666666666655
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.90 E-value=0.0075 Score=47.13 Aligned_cols=84 Identities=11% Similarity=0.093 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 738 RPDVISYTVLIAKLCNTQN---LEDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT 813 (831)
Q Consensus 738 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 813 (831)
+.|...+..+..++...++ .++|.+++++.++ ..|+ +.....++..+.+.|++++|+..|+++++ ..|+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~--~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD--SNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--CCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcc
Confidence 4566788888888876655 7999999999998 4554 77888899999999999999999999998 5666555
Q ss_pred HHHHHHHHHhcc
Q 003315 814 KSSLERGIEKAR 825 (831)
Q Consensus 814 ~~~l~~~~~~~~ 825 (831)
...+.+.+.+++
T Consensus 79 ~~~i~~~I~~A~ 90 (93)
T 3bee_A 79 RVTIIESINKAK 90 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556666666654
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.86 E-value=0.016 Score=57.71 Aligned_cols=77 Identities=17% Similarity=0.025 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 738 RPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSL 817 (831)
Q Consensus 738 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l 817 (831)
+.+..+|.++...+...|++++|+..++++++. .|+...|..++..+.-.|++++|.+.+++... +.|...|+.-.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 456678888888788889999999999999985 58988888899999999999999999999998 79999887644
Q ss_pred H
Q 003315 818 E 818 (831)
Q Consensus 818 ~ 818 (831)
-
T Consensus 350 ~ 350 (372)
T 3ly7_A 350 E 350 (372)
T ss_dssp H
T ss_pred h
Confidence 3
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.73 E-value=1.1e-06 Score=88.19 Aligned_cols=118 Identities=19% Similarity=0.125 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
.+.+|..|+++..+.++..+|++.|-++ .|+..|..++.+..+.|.+++-+..+.-..+. ..++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4567889999999999999998876432 25556888999999999999999888766654 345566678888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKW 301 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (831)
+|++.++..+-.+.+. .||..-...+.+-|...|.++.|.-+|..+
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 9999998765443331 467666777888888888888887776543
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.71 E-value=0.01 Score=61.83 Aligned_cols=94 Identities=12% Similarity=-0.044 Sum_probs=75.1
Q ss_pred ccCChhHHHHHHHHHHh---C--CCCC--CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCC
Q 003315 94 LRKEPKIALSFFEQLKR---S--GFSH--NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGS 166 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (831)
..|+++.|+.+++++.. . |..| ...+++.++.+|...|++++|..++.+++.- .....+++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-----------~~~~lG~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-----------YSKHYPVYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHHSCSSC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-----------HHHHcCCCC
Confidence 45789999999998762 2 3222 2566888999999999999999999987764 334445566
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINR 198 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (831)
+....+++.|+..|...|++++|..+|+++++
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 66778999999999999999999999999765
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.70 E-value=0.012 Score=45.92 Aligned_cols=47 Identities=15% Similarity=-0.026 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 186 FDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
.++|..+++++++.++. ++.+...+...+.+.|++++|...|+.+++
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444444422 444444444444444444444444444444
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.68 E-value=0.0052 Score=64.05 Aligned_cols=94 Identities=3% Similarity=-0.074 Sum_probs=65.9
Q ss_pred cCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----CCC-
Q 003315 129 CCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR-----GFV- 202 (831)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~- 202 (831)
..|++++|..++.+.++... ...+++.+....+++.|+.+|...|++++|+.++++++.. |..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~-----------~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS-----------SVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT-----------TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred hccCHHHHHHHHHHHHHHhh-----------CccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 46778888888888776522 2223344556678899999999999999999999887642 321
Q ss_pred c-ChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 203 W-SICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 203 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
| -..+++.+..+|..+|++++|+.+|++.++
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1 233567777777788888888777777654
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.65 E-value=0.097 Score=49.88 Aligned_cols=93 Identities=9% Similarity=-0.046 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCH
Q 003315 256 MQEAVEVFLEMEKAGVTPN---AFAYSTCIEGLCMN-----GMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ-NKL 326 (831)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 326 (831)
...|...++++++. .|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++..+.+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46788888888876 566 56888888888884 89999999999999876223478888889988885 899
Q ss_pred hHHHHHHHHHHHCCCC--CCHHHHHH
Q 003315 327 EKAECVLLHMEKQGVV--PDVYAYSA 350 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~--p~~~~~~~ 350 (831)
+++.+.+++.....+. |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999999987665 66554443
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.60 E-value=0.083 Score=52.66 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 274 NAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
+..++..+...+...|++++|...+++++..+ |+...|..+...+.-.|+.++|.+.|++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44444444444444455555555555555443 34444444455555555555555555555543
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.46 E-value=0.024 Score=44.89 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=61.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChh-hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSIC-SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
..+..+...|++++|+..|+++++..+. +.. .+..+..++...|++++|...|++.++.. +.+...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------
Confidence 5667788899999999999999888644 667 88888999999999999999999988764 233333311
Q ss_pred CChHHHHHHHHHHH
Q 003315 254 GSMQEAVEVFLEME 267 (831)
Q Consensus 254 g~~~~A~~~~~~m~ 267 (831)
+.+.++...|++..
T Consensus 75 ~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 KMVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHh
Confidence 44555666655543
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.35 E-value=0.027 Score=45.15 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRG------LEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT 813 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 813 (831)
+..-+..++..+.+.|+++.|+..++++.+.- -.+...++..|..+|.+.|++++|..+++++.+ +.|+...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHH
Confidence 44455678888999999999999999988641 123467889999999999999999999999998 7888765
Q ss_pred H
Q 003315 814 K 814 (831)
Q Consensus 814 ~ 814 (831)
.
T Consensus 82 ~ 82 (104)
T 2v5f_A 82 A 82 (104)
T ss_dssp H
T ss_pred H
Confidence 4
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.30 E-value=0.023 Score=46.45 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 003315 721 DVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLED---GITVFNEISDRGLEP--DTVTYTALLCGYLAKGDLDRA 795 (831)
Q Consensus 721 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--d~~~~~~l~~~~~~~g~~~~A 795 (831)
....+.+-+.+....| .|+..+--.+.+++.+..+..+ ++.+++.+...+ .| .......|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3455566666665555 3888888889999999998776 999999988753 23 244567788899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 796 IALVDEMSVKGIQGDDYTKSSLERGIE 822 (831)
Q Consensus 796 ~~~~~~~~~~g~~pd~~~~~~l~~~~~ 822 (831)
+++++.+++ ++|++.-...|...+.
T Consensus 94 ~~~~~~lL~--~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 999999999 8999877666665544
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.22 E-value=0.024 Score=59.14 Aligned_cols=100 Identities=8% Similarity=-0.023 Sum_probs=71.5
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---
Q 003315 123 IVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR--- 199 (831)
Q Consensus 123 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 199 (831)
.+..+...|++++|..++.++++.... ..+++.+....+++.|+..|...|++++|+.++++++..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~-----------~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSE-----------RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI 361 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSC-----------CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccC-----------cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH
Confidence 344566789999999999988865322 112344556778999999999999999999999987642
Q ss_pred --CCC-c-ChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 200 --GFV-W-SICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 200 --~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
|.. | -..+++.+..+|...|++++|+.++++..+
T Consensus 362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 211 1 233567777788888888888887777653
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.19 E-value=0.03 Score=58.46 Aligned_cols=94 Identities=9% Similarity=-0.054 Sum_probs=75.0
Q ss_pred ccCChhHHHHHHHHHHh---C--CCCC--CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCC
Q 003315 94 LRKEPKIALSFFEQLKR---S--GFSH--NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGS 166 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (831)
..|+++.|+..++++.. . |..| ...+++.++.+|...|++++|..++.+++.- .....+++.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i-----------~~~~lg~~H 367 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP-----------YRIFFPGSH 367 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------HHHHSCSSC
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------HHHHcCCCC
Confidence 56899999999998862 1 2222 2566888899999999999999999987754 233444556
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINR 198 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (831)
+.....++.|+..|...|++++|+.+|+++++
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66778999999999999999999999998764
No 225
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.19 E-value=0.037 Score=43.66 Aligned_cols=84 Identities=14% Similarity=-0.011 Sum_probs=64.1
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHH-HHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 003315 122 AIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTR-LSDAMIKAYVSVGMFDEGIDILFQINRRG 200 (831)
Q Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 200 (831)
..+..+...|++++|...+.++++..|. ++. ++..++.+|...|++++|+..|+++++.+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-------------------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-------------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-------------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4566788899999999999999988554 556 88899999999999999999999999987
Q ss_pred CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 201 FVWSICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 201 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
+. +..++.. +.+.++...|++...
T Consensus 66 p~-~~~~~~~--------~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 66 PD-SPALQAR--------KMVMDILNFYNKDMY 89 (99)
T ss_dssp TT-STHHHHH--------HHHHHHHHHHCCTTH
T ss_pred CC-cHHHHHH--------HHHHHHHHHHHHHhc
Confidence 54 4443321 345566666655443
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.10 E-value=0.25 Score=40.20 Aligned_cols=67 Identities=7% Similarity=0.102 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003315 621 KSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGIT 688 (831)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 688 (831)
.......++.+..+|+.++-.++...++. +.+|++...-.+..+|.+.|+..+|.+++++.-++|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33444556666777777777777777544 24566777777777777777777777777777776653
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.00 E-value=0.23 Score=57.28 Aligned_cols=99 Identities=13% Similarity=0.185 Sum_probs=62.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 003315 425 LCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKA 504 (831)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 504 (831)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+..
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence 44667888888776543 2567888888888888888888888887642 23344455556777666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003315 505 FDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLD 544 (831)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 544 (831)
..+.+.....| -++....+|.+.|++++|++++.
T Consensus 727 ~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 727 VTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHH
Confidence 66555555443 12333445556667666666543
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.91 E-value=0.42 Score=55.12 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 003315 244 VIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ 323 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (831)
..++..+.+.|..+.|+++.+. |. .-.......|++++|.++.+. ..+...|..+++.+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHc
Confidence 4555555666666666654421 11 112233455666666655432 23455666666666666
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003315 324 NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHE 370 (831)
Q Consensus 324 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 370 (831)
|+++.|++.|.++.. |..+...|...|+.+....+.+.
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 666666666666542 33344444445555544444333
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.65 E-value=0.085 Score=42.18 Aligned_cols=66 Identities=15% Similarity=0.056 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC------CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRG------FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
++.-+..++..+.+.|++..|+..|+.+++.. ..+....+..+..++.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44566788888888888888888888877641 1234556677777777777777777777777764
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.54 E-value=0.084 Score=44.95 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 619 PSKSMYDKLIGALCQAE---EMEQAQLVFNVLVDKGLTP--HLVTYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 619 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
++..+...+..++++.+ +++++..+|+.+.+.+ .| +...+..|.-+|.+.|++++|.+.++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444455544 3335555555555432 12 233344445555555555555555555554
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.44 E-value=4.7 Score=45.68 Aligned_cols=168 Identities=12% Similarity=0.050 Sum_probs=90.8
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCh---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc----HHHHHHHHHhcCCH
Q 003315 530 LCMGGRVEEAEAFLDGLKGKCLENY---SAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSS----CNKLITNLLILRDN 602 (831)
Q Consensus 530 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~ 602 (831)
+.-.|+.+....++..+.+...+.+ -.+.-++...|+.+.+..+++.+.... ++.. ...++-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD---ESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCCH
Confidence 3345555555666555544332221 223333445566666666666655431 2221 22334455666776
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH-HHHHHHHHH
Q 003315 603 NNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCL-REARDVFND 681 (831)
Q Consensus 603 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 681 (831)
.....++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+..-.|+. .+|++++..
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 66666777766531 1222222233334445677777777777666542 44555445555555555554 678889999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccc
Q 003315 682 MKQRGITPDVVTYTVLFDAHSKIN 705 (831)
Q Consensus 682 m~~~~~~p~~~~~~~ll~~~~~~~ 705 (831)
+.. .+|..+-...+-+++.++
T Consensus 655 L~~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 655 LTK---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHT---CSSHHHHHHHHHHHHHHS
T ss_pred Hcc---CCCHHHHHHHHHHHHHHh
Confidence 874 566666555555665544
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.22 E-value=0.15 Score=48.60 Aligned_cols=68 Identities=7% Similarity=-0.021 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc-CChhHHHHHHHHHHhcCC
Q 003315 169 LTRLSDAMIKAYVSV-----GMFDEGIDILFQINRRGFVWSICSCNYFMNQLVEC-GKVDMALAVYQHLKRLGL 236 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~ 236 (831)
+..+|..++..|... |+.++|...|+++++.++..+..+.......+++. |+.+++.+.+++.+....
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 455888888888884 89999999999998887654577777788888774 888999999998887543
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.12 E-value=0.66 Score=38.57 Aligned_cols=84 Identities=14% Similarity=0.138 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 737 IRPDVISYTVLIAKLCNTQNLE---DGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT 813 (831)
Q Consensus 737 ~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 813 (831)
-.|+..+--.+.|++++..+.+ +++.+++.+...+-.-......-|.-++.+.|++++|+++.+.+++ ++|++.-
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~Q 112 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 112 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHH
Confidence 3678888888899999988654 7899999988743222345567788899999999999999999999 8999977
Q ss_pred HHHHHHHHH
Q 003315 814 KSSLERGIE 822 (831)
Q Consensus 814 ~~~l~~~~~ 822 (831)
...|...+.
T Consensus 113 A~~Lk~~Ie 121 (144)
T 1y8m_A 113 VGALKSMVE 121 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776655444
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.96 E-value=1.6 Score=38.16 Aligned_cols=103 Identities=12% Similarity=0.129 Sum_probs=60.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 212 MNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGML 291 (831)
Q Consensus 212 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 291 (831)
.......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34455677777777766554 3566777777777777777777777766542 23333445555665
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 003315 292 DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLH 335 (831)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 335 (831)
+.-..+-+.....| -++.-...+.-.|+++++.++|.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55554444444443 133334445556777777666644
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.93 E-value=0.26 Score=40.34 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003315 736 GIRPDVISYTVLIAKLCNTQNL---EDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 736 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
+-.|+..+--.+.|++++..+. .+++.+++.+.+.+-.-....+.-|.-|+.+.|++++|+++.+.+++ ++|++.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 4467777777888999988865 46899999998754111356677888899999999999999999999 899997
Q ss_pred HHHHHHHH----HHhcccccc
Q 003315 813 TKSSLERG----IEKARILQY 829 (831)
Q Consensus 813 ~~~~l~~~----~~~~~~~~~ 829 (831)
-...|... +.|-|++.|
T Consensus 113 QA~~Lk~~Ie~ki~kd~~~~~ 133 (134)
T 3o48_A 113 QVGALKSMVEDKIQKEENLYF 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 76665554 344455544
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.90 E-value=0.4 Score=40.16 Aligned_cols=103 Identities=10% Similarity=0.002 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHcCCCcChh-hHHHHHH------HHHHcCChhHHHHHHHHHHhcC
Q 003315 169 LTRLSDAMIKAYVSVGMF------DEGIDILFQINRRGFVWSIC-SCNYFMN------QLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
++.+|-..+...-+.|++ +..+++|+++...- +|+.. .+...+. .+...++.++|.++|+.+++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 566777777777777888 78888888877653 33221 1111111 1233478888888888887652
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003315 236 LSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTP 273 (831)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 273 (831)
+.=...|......-.++|+...|.+++.+.+..+.+|
T Consensus 91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2226667777777778888888888888888766443
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.70 E-value=1.6 Score=38.22 Aligned_cols=100 Identities=14% Similarity=0.210 Sum_probs=61.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 003315 425 LCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKA 504 (831)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 504 (831)
....|+++.|.++.+++. +...|..|......+|+++-|.+.|.+..+ +..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 346677777777766652 566777777777777777777777776532 23344445556776666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003315 505 FDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDG 545 (831)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (831)
..+-+.....| -++.....+.-.|+++++.++|.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 65555555444 133344455556777777766643
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.66 E-value=0.4 Score=40.15 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=65.7
Q ss_pred CChhhHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH----HHHHHH---HHHHhcCChhHHHHHHHHHHHC
Q 003315 238 LNEYTYVIVIKALCKKGSM------QEAVEVFLEMEKAGVTPNAF----AYSTCI---EGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----~~~~l~---~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
.|..+|-..+...-+.|+. ++..++|+++... ++|+.. .|.-+- ..+...+|.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555666666666666666 6666677766653 344321 111110 0122347788888888888765
Q ss_pred CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 003315 305 DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVP 343 (831)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 343 (831)
+ .--..+|...+..-.++|++..|.+++...+..++.|
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3 3337778888888888888888888888888877664
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.78 E-value=3.5 Score=33.79 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=77.5
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAV 260 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (831)
.-.|..++..++..+..... +..-+|.++--....-+-+-..++++.+-+. -|. ...|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 44677777777777766532 4445666665556666666666666665442 121 1334444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 003315 261 EVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG 340 (831)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (831)
..+-.+- .+.......+..+...|+-++-.+++..+... .++++.....+..+|.+.|+..+|.+++.+.-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4443321 23334445555666666666666666664433 25566666666666666666666666666666655
Q ss_pred C
Q 003315 341 V 341 (831)
Q Consensus 341 ~ 341 (831)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.76 E-value=0.3 Score=39.92 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 003315 569 EAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNN---ALKLFKTMITLNAEP--SKSMYDKLIGALCQAEEMEQAQLV 643 (831)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 643 (831)
.+.+-+.+....|. ++..+...+.|++.+.++... ++.+++...+.+ .| .....-.|.-++.+.|++++|++.
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33333443333333 455555566666666555444 555555555432 12 111222233344455555555555
Q ss_pred HHHHHH
Q 003315 644 FNVLVD 649 (831)
Q Consensus 644 ~~~~~~ 649 (831)
++.+++
T Consensus 97 ~~~lL~ 102 (126)
T 1nzn_A 97 VRGLLQ 102 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 241
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.50 E-value=4.5 Score=39.30 Aligned_cols=18 Identities=6% Similarity=0.038 Sum_probs=12.6
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 003315 631 LCQAEEMEQAQLVFNVLV 648 (831)
Q Consensus 631 ~~~~g~~~~A~~~~~~~~ 648 (831)
|...|+...|..+|+...
T Consensus 198 yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 456677777877777665
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.22 E-value=9 Score=37.24 Aligned_cols=27 Identities=33% Similarity=0.249 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003315 518 PNFVTHNMIIEGLCMGGRVEEAEAFLD 544 (831)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~a~~~~~ 544 (831)
-++.....+...|.+.|++.+|+..|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 466777888888888888888887764
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.73 E-value=7.7 Score=40.39 Aligned_cols=187 Identities=11% Similarity=0.034 Sum_probs=95.5
Q ss_pred CChhHHHHHHHHHHHc-----CCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCCChhhHHHHHHHH----Hhc
Q 003315 184 GMFDEGIDILFQINRR-----GFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL-GLSLNEYTYVIVIKAL----CKK 253 (831)
Q Consensus 184 ~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~----~~~ 253 (831)
|++++|++.+..+.+. +..........++..+...++++...+.+..+.+. |.. ......+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 5677777766554432 12234455677777888888888777766655532 221 12222233222 122
Q ss_pred CChHH--HHHHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC---hhhHHHHHHHH
Q 003315 254 GSMQE--AVEVFLEMEK--AG-VTP---NAFAYSTCIEGLCMNGMLDLGYELLLKWEEA--DIPLS---AFAYTVVIRWF 320 (831)
Q Consensus 254 g~~~~--A~~~~~~m~~--~~-~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 320 (831)
...+. -+.+.+.... .| +-- .......|...+...|++.+|..++..+... +.-.. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 1111111110 01 000 1123345666777777777777777776532 21111 34566667777
Q ss_pred HhcCCHhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 321 CDQNKLEKAECVLLHMEK----QGVVPD--VYAYSALISGYCKFGKINKALLLHHEMT 372 (831)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~~~ 372 (831)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.+..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777777777777776532 111222 1234455666666777777766665554
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.31 E-value=2.7 Score=46.64 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=47.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 748 IAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMS 803 (831)
Q Consensus 748 ~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 803 (831)
.+.+...|+++-|+++-++.... .+-+..+|..|..+|...|+++.|+-.++.+-
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 45566789999999999999984 33358999999999999999999999998874
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.71 E-value=2.3 Score=47.12 Aligned_cols=130 Identities=10% Similarity=-0.023 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHcCC-hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC-hhHHHHHHHHHHhc------CCCCC-h
Q 003315 170 TRLSDAMIKAYVSVGM-FDEGIDILFQINRRGFVWSICSCNYFMNQLVECGK-VDMALAVYQHLKRL------GLSLN-E 240 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~------~~~~~-~ 240 (831)
......+++.+.-.++ ++.|+.+++++.+.++..+......++..+...+. --+|.+++.+.++. ..++. .
T Consensus 248 N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 248 NYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp SHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 3344455555555555 46788888877776433222222222222222221 11344444333220 11111 0
Q ss_pred ----------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003315 241 ----------YTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLK 300 (831)
Q Consensus 241 ----------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (831)
.....-.+.+...|+++-|+++.++..... +-+-.+|..|..+|...|+++.|+-.++.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 011122233444566666666666555431 22344555555555555555555555444
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.84 E-value=16 Score=35.80 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003315 518 PNFVTHNMIIEGLCMGGRVEEAEAFL 543 (831)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~a~~~~ 543 (831)
-|+.....+...|.+.+++.+|+..|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35566666677777777777776665
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.42 E-value=4 Score=41.64 Aligned_cols=66 Identities=15% Similarity=0.262 Sum_probs=33.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 003315 211 FMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEK-----AGVTPNAFA 277 (831)
Q Consensus 211 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 277 (831)
++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|++..+ .|+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4444455555555555555554432 33444555555555555555555555554422 255555544
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.25 E-value=2 Score=32.91 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003315 759 DGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGI 821 (831)
Q Consensus 759 ~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~ 821 (831)
+..+-++.+....+.|++.+..+.+++|.+.+|+..|.++++-+..+ ..+...+|..++..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 45555666666667777777777777777777777777777766654 233344565555544
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.46 E-value=7.5 Score=46.35 Aligned_cols=177 Identities=12% Similarity=0.026 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc-----------------------ChhhHHHHHHHHHHcCChhHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW-----------------------SICSCNYFMNQLVECGKVDMALA 226 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~A~~ 226 (831)
+..-..++++|...|++++|...|.++... ... -..-|..++..+-+.+.++.+.+
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344578999999999999999999875321 110 01124455555555555555555
Q ss_pred HHHHHHhcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003315 227 VYQHLKRLGLSLNE----YTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWE 302 (831)
Q Consensus 227 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (831)
.-...++...+.+. ..|..+.+.+...|++++|...+-.+.... --......|+..+|..|..+.-..+
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~LV~~lce~~~~~~L~~l----- 993 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDFVNQLTKQGKINQLLNY----- 993 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHHHHHHHHHCCHHHHHHH-----
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHhCCChhhhhCC-----
Confidence 54444432111111 135555555666666666666655555432 2233444555555544443321110
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHH
Q 003315 303 EADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG--VVPDVYAYSALISGYCKFGKINKALL-LHHEMT 372 (831)
Q Consensus 303 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~~~~~~A~~-~~~~~~ 372 (831)
--.|..++..+++....+.. +...+..|..|=..+...|++.+|-. +|+...
T Consensus 994 ------------------pf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 994 ------------------SMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp ------------------TTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ------------------CCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 01233444444544332211 11122446666666777788766544 455543
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.24 E-value=2.8 Score=42.80 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSV-----KGIQGDDYTKSS 816 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~pd~~~~~~ 816 (831)
....++..+...|++++|+..+..+... -+-+...|..|+.+|.+.|+..+|++.|+++.+ .|++|...+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3445677788999999999999999874 344788999999999999999999999998764 499998886553
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.99 E-value=4 Score=35.04 Aligned_cols=133 Identities=8% Similarity=-0.086 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCcCh-------hhHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCCChh
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRG-FVWSI-------CSCNYFMNQLVECGKVDMALAVYQHLKRL--GLSLNEY 241 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 241 (831)
++..-++.+...|.|+.|+.+.+.++... ..++. .++..+.+++...+++..|...|++.++. .+..+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45677788889999999999988865432 12231 25677889999999999999999997542 1111111
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRW 319 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (831)
++..+. ....... ......+...---+..+|.+.+++++|+.+++.+.... -++.+-..|.+.
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt~kvnm~LakL 164 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLANL 164 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHHH
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cCHHHHHHHHHH
Confidence 111110 0000000 00112233333446677888888888888877654331 234444444443
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.37 E-value=8.1 Score=32.14 Aligned_cols=68 Identities=13% Similarity=0.060 Sum_probs=35.7
Q ss_pred CCCcccHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 583 LVKKSSCNKLITNLLILRDNN---NALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 650 (831)
.|+..+...+.|++.+..+.+ +++.+++.+.+.+..-.....-.|.-++.+.|++++|++..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 456666666666666665443 45566666655432112222233444555555555555555555554
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.67 E-value=9.9 Score=45.30 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 003315 311 FAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDV----YAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVI 386 (831)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 386 (831)
.-|..++..|-+.+.++.+.+.-...++.....+. ..|..+...+...|++++|...+-.+.....+ ...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 34666777777777777777776666553221121 24667777788888888888777777655443 4456666
Q ss_pred HHHHHhcCChHHHH
Q 003315 387 LKGLCQKGMASATI 400 (831)
Q Consensus 387 l~~~~~~~~~~~a~ 400 (831)
+..++..+..+.-.
T Consensus 978 V~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 978 VNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHCCHHHHH
T ss_pred HHHHHhCCChhhhh
Confidence 77777777666554
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.79 E-value=7.7 Score=31.81 Aligned_cols=57 Identities=5% Similarity=-0.081 Sum_probs=43.7
Q ss_pred ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003315 719 KEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTV 777 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 777 (831)
..+..+++.+++++...+..-...++-.|.-++.+.|++++|.+..+.+.+ +.|+..
T Consensus 56 ~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 56 VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 456778888888888655111234667778889999999999999999997 677643
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.47 E-value=5.6 Score=34.14 Aligned_cols=121 Identities=8% Similarity=-0.002 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcC-CCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCH
Q 003315 206 CSCNYFMNQLVECGKVDMALAVYQHLKRLG-LSLNE-------YTYVIVIKALCKKGSMQEAVEVFLEMEKA--GVTPNA 275 (831)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~ 275 (831)
.++-.-+..+...+.++.|+-+.+-+.... .+++. .+...+.+++...|++.+|...|++.++. .+.-+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344555666777778887777776655321 12332 14556667777778888888888776542 111111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
.+...+. . ...... ....+.+......+..+|.+.+++++|..+++.+...
T Consensus 101 s~~~~~~-~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 101 KVRPSTG-N---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred Ccccccc-c---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1111110 0 000000 0112334556666777888888888888887776443
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.62 E-value=11 Score=30.87 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 759 DGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEK 823 (831)
Q Consensus 759 ~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 823 (831)
+..+-++.+....+-|++.+..+-+.+|.+.+|+..|..+++-+..+ ..+...+|..++..+.-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqElkP 134 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRP 134 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHHhh
Confidence 56667777777788999999999999999999999999999988765 44556667777766543
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.82 E-value=5.4 Score=30.67 Aligned_cols=62 Identities=10% Similarity=0.204 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 721 DVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALL 783 (831)
Q Consensus 721 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~ 783 (831)
+.-+..+-++.+-..++.|++....+.+++|.|.+++.-|+.+++-+..+ +.+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 45566677777777889999999999999999999999999999999865 444455566555
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.81 E-value=6.5 Score=36.88 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=34.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 751 LCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSL 817 (831)
Q Consensus 751 ~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l 817 (831)
+.+.|++++|++....-++. -+-|......|+.-++-.|++++|.+-++.+.+ +.|+......+
T Consensus 7 ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~ 70 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQ 70 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHH
Confidence 34555566666555555543 233455555555555666666666666555555 45554443333
No 259
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.42 E-value=57 Score=33.73 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=35.6
Q ss_pred cCChhhHHHHHHHHHHc-----CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003315 463 QGKLGDALDLFKEMKEM-----GHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKR 513 (831)
Q Consensus 463 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 513 (831)
.|++++|++.+..+.+. ...........++..|...|+++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 37788888877666432 1223445577788889999999988887776654
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.94 E-value=12 Score=28.63 Aligned_cols=79 Identities=13% Similarity=0.070 Sum_probs=59.6
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003315 720 EDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALV 799 (831)
Q Consensus 720 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~ 799 (831)
-..++|..|-+.+...+. ....--+-+..+.+.|++++|..+.+.. +.||...|.+| +-.+.|-.+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 457788888887776553 2223334455678999999999988776 58999999888 456889999999888
Q ss_pred HHHHhCC
Q 003315 800 DEMSVKG 806 (831)
Q Consensus 800 ~~~~~~g 806 (831)
.++..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 8887755
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.06 E-value=22 Score=29.06 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=45.5
Q ss_pred CchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHH
Q 003315 150 ANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMN 213 (831)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 213 (831)
+.+++..-+..+...+..++|.+....+++|.+.+++..|+.+|+-+...- .+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455666666677777888888888888888888888888888888776543 223445666654
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.49 E-value=12 Score=28.63 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=59.7
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003315 720 EDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALV 799 (831)
Q Consensus 720 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~ 799 (831)
-..++|..|-+.+...+. ....--+-+..+.+.|++++|..+.+.. +.||...|.+| +-.+.|-.+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 357788888887776553 2223334455678999999999887776 58999999888 457899999999988
Q ss_pred HHHHhCC
Q 003315 800 DEMSVKG 806 (831)
Q Consensus 800 ~~~~~~g 806 (831)
.++..+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 8887765
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.36 E-value=57 Score=31.92 Aligned_cols=24 Identities=8% Similarity=-0.110 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHH
Q 003315 275 AFAYSTCIEGLCMNGMLDLGYELL 298 (831)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~ 298 (831)
......+...|.+.+++.+|...|
T Consensus 136 p~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 136 PELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHH
Confidence 333444444444555544444443
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.88 E-value=6.4 Score=36.93 Aligned_cols=55 Identities=25% Similarity=0.321 Sum_probs=37.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 284 GLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
.+.+.|+++++++....-++.+ |.|......|+..+|-.|++++|.+.++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456666677776666666664 666777777777777777777777777766664
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.38 E-value=19 Score=27.57 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=54.8
Q ss_pred cCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003315 183 VGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEV 262 (831)
Q Consensus 183 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (831)
....++|..+-+-+...+. ...+-..-+..+...|+|++|..+.+.+. -||...|.+|.. .+.|..+++...
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 3456777777666665542 22222333455677888888887766543 478777776653 467887888777
Q ss_pred HHHHHhCCCCCCHHHHH
Q 003315 263 FLEMEKAGVTPNAFAYS 279 (831)
Q Consensus 263 ~~~m~~~~~~p~~~~~~ 279 (831)
+.++...| .|....|.
T Consensus 92 L~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCC-CHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 77776665 44444443
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.78 E-value=19 Score=37.21 Aligned_cols=61 Identities=7% Similarity=-0.042 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 312 AYTVVIRWFCDQNKLEKAECVLLHMEKQ--GVVPDVYAYSALISGYCKFGKINKALLLHHEMT 372 (831)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 372 (831)
+...++..|.+.|++++|.+.+.++... +...-...+..++..+...+++..+...+++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455666666666666666666666543 122233455556666666666666666666553
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.87 E-value=18 Score=27.67 Aligned_cols=88 Identities=13% Similarity=0.041 Sum_probs=53.7
Q ss_pred cCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003315 183 VGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEV 262 (831)
Q Consensus 183 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (831)
....++|..+-+-+...+. ...+-..-+..+...|+|++|..+.+.+. -||...|.+|. -.+.|..+++...
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHH
Confidence 3456677776666655442 22222233455677888888887665543 47777777665 3467887888777
Q ss_pred HHHHHhCCCCCCHHHHH
Q 003315 263 FLEMEKAGVTPNAFAYS 279 (831)
Q Consensus 263 ~~~m~~~~~~p~~~~~~ 279 (831)
+.++...| .|....|.
T Consensus 91 L~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 91 LAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTCS-SHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 77777665 44444443
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.76 E-value=29 Score=35.84 Aligned_cols=61 Identities=8% Similarity=-0.127 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKA--GVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWE 302 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (831)
+...++..|.+.|++++|.+.|.++.+. +...-...+...++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4445555566666666666666665543 111223344445555555555555555555543
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.92 E-value=34 Score=30.46 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 003315 291 LDLGYELLLKWEEADIPLS-AFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVP 343 (831)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 343 (831)
..++..+|..|...++... ...|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455666666655544332 3455566666666666666666666666655554
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.68 E-value=61 Score=27.33 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=27.0
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 003315 294 GYELLLKWEEADIPLS-AFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVP 343 (831)
Q Consensus 294 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 343 (831)
+..+|..|...++... ...|...+..+...|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5555555555543332 3345555555556666666666666655554444
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.89 E-value=1.4e+02 Score=30.01 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=19.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 486 ITYNVLAGAFAQYGAVQKAFDLLNYMK 512 (831)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 512 (831)
.....+...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445567777788888888777777654
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=60.36 E-value=1.9e+02 Score=31.28 Aligned_cols=340 Identities=9% Similarity=-0.082 Sum_probs=163.1
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHH
Q 003315 94 LRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLS 173 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (831)
.+++|..-+.+|.. .+.+...-...+..+...|+..+|......+.......+..-..++..+...+..-....+
T Consensus 84 ~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp HTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred hCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHH
Confidence 35677666664432 2346766677777888889888787777665544333344445566666644433333333
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcChh-hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhh---HHHHHHH
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSIC-SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYT---YVIVIKA 249 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~ 249 (831)
.- +......|+...|..+...+ +++.. ....++.+. .+...+...... +.++... +...+.-
T Consensus 159 ~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~r 224 (618)
T 1qsa_A 159 ER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLA---NNPNTVLTFART-----TGATDFTRQMAAVAFAS 224 (618)
T ss_dssp HH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHH---HCGGGHHHHHHH-----SCCCHHHHHHHHHHHHH
T ss_pred HH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHH---hChHhHHHHHhc-----cCCChhhHHHHHHHHHH
Confidence 33 34455666666666554322 11211 112222111 112222222211 1222221 1112222
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGVTPNAFAY----STCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
+.+ .+.+.|...+....+.. ..+.... ..++..+...+...++...+...... ..+.....-.++...+.|+
T Consensus 225 lar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 225 VAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGD 300 (618)
T ss_dssp HHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTC
T ss_pred HHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCC
Confidence 222 36778888887775432 1222222 22222233344244555555554443 2344344455555667788
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 003315 326 LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLE 405 (831)
Q Consensus 326 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 405 (831)
++.|...|+.|...... .....-=+..++.+.|+.++|..+|+.+... .+|..++.+ .+.|..-..
T Consensus 301 ~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~lAa-~~Lg~~~~~------ 366 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPMVAA-QRIGEEYEL------ 366 (618)
T ss_dssp HHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHHHHH-HHTTCCCCC------
T ss_pred HHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHHHHH-HHcCCCCCC------
Confidence 88888888877653211 2322333555667778888888888887642 123222211 122211000
Q ss_pred HHHCCCCc---CH---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHH
Q 003315 406 FKDMGFFL---NK---VCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFK 474 (831)
Q Consensus 406 ~~~~~~~~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 474 (831)
......+ .. ..-...+..+...|....|...+..+... . +......+.......|..+.++....
T Consensus 367 -~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 367 -KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp -CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0000000 00 01112344566778888887777766543 1 22233334444455666666655443
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.33 E-value=98 Score=27.60 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=33.6
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIE 283 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 283 (831)
+..+-...+.++.+.+..+ +...+..+.+ .++...-...+.++.+.|.. ++...+.++.+ .++...-...+.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444455555555555432 2233333332 24444444444555544442 23333333332 234444444444
Q ss_pred HHHhcCC
Q 003315 284 GLCMNGM 290 (831)
Q Consensus 284 ~~~~~~~ 290 (831)
++.+.+.
T Consensus 166 aL~~~~~ 172 (211)
T 3ltm_A 166 ALGEIGG 172 (211)
T ss_dssp HHHHHCS
T ss_pred HHHHhCc
Confidence 4444443
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.53 E-value=32 Score=30.61 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 003315 722 VVDASVFWNEMKEMGIRPDVI-SYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDT 776 (831)
Q Consensus 722 ~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~ 776 (831)
..++..+|.-|...|+.-... .|......+...|++.+|.++|+.-++.+-+|-.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 568899999999888877665 7788888899999999999999999998888843
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.83 E-value=86 Score=26.87 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=28.1
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 003315 294 GYELLLKWEEADIPLS-AFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVP 343 (831)
Q Consensus 294 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 343 (831)
...+|..|...++... ...|...+..+-..|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4455555555544332 3445555556666666666666666666655554
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.80 E-value=26 Score=29.65 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=24.0
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003315 760 GITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDD 811 (831)
Q Consensus 760 A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~ 811 (831)
+.++|..|...|+--. ...|......+-..|++.+|.++++.-++++-.|-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4445555544443322 333444444444555555555555554444444433
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.46 E-value=29 Score=29.74 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003315 724 DASVFWNEMKEMGIRPDVI-SYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTV 777 (831)
Q Consensus 724 ~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 777 (831)
++..+|..|...|+..... .|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 3566777777777666554 66777777777788888888888877777777543
No 278
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=51.70 E-value=2.1e+02 Score=29.42 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=44.8
Q ss_pred HHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCC
Q 003315 661 MMIHGYC---KINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGI 737 (831)
Q Consensus 661 ~l~~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 737 (831)
.++.++. +.++.+.|+..+.+|++.|..|..+.-..+..+...+|+ .......-|...++.....|.
T Consensus 257 d~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~----------a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 257 DLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN----------ADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG----------GCTHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC----------CChhHHHHHHHHHHHHHHhCC
Confidence 3444443 457899999999999999999888777777777766654 112223445555555555553
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.30 E-value=1.3e+02 Score=26.69 Aligned_cols=147 Identities=14% Similarity=0.080 Sum_probs=73.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
..+..+.+.|. .+++..+.+++. .++...-...+.++.+.+..+ +...+..+.+ .++...-...+.++.+.|
T Consensus 38 ~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 38 AAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp HHHHHHHHHCC-GGGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC-ccHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 44444444554 234444444443 235555555666666666533 3333333333 356666666666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLL 334 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 334 (831)
+.+ +...+.++.+ .++...-...+.++...++. ++...+..+.+ .++..+....+.++.+.+. .++...+.
T Consensus 110 ~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~ 180 (211)
T 3ltm_A 110 DER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAME 180 (211)
T ss_dssp CGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred cHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 533 3444444443 35555555556666666553 23344444332 2345555555666655554 33444444
Q ss_pred HHHH
Q 003315 335 HMEK 338 (831)
Q Consensus 335 ~~~~ 338 (831)
.+.+
T Consensus 181 ~~l~ 184 (211)
T 3ltm_A 181 KLAE 184 (211)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 280
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=48.25 E-value=1.7e+02 Score=29.89 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=43.4
Q ss_pred CChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHH
Q 003315 82 LNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLL 141 (831)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 141 (831)
++...++.-+.....+++.|+++ +.+.|++.....|..-...|...|++++|..+.-
T Consensus 329 v~e~~ivpyi~~~l~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA 385 (494)
T 1bpo_A 329 VEEENIIPYITNVLQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAA 385 (494)
T ss_dssp ECTTTHHHHHHHTTCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EccccchhhhhhccCCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555666666666899988875 5577777778888888999999999999887654
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.91 E-value=90 Score=32.63 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC---hhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 275 AFAYSTCIEGLCMNGMLDLGYELLLKWEEADI-PLS---AFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
...++.+++.|...+.++.|..+..+..-... ..+ ..-+..+.+.+.-.++|.+|.+.|....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34566677777777777777777776531100 011 112234566677778888888887777664
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.42 E-value=1.9e+02 Score=26.19 Aligned_cols=52 Identities=21% Similarity=0.174 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHcCCCc-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003315 187 DEGIDILFQINRRGFVW-SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSL 238 (831)
Q Consensus 187 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 238 (831)
+++..+|..+...++.. -..-|......+-..|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 57777888887776543 33346677777888888888888888887765454
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.40 E-value=45 Score=30.26 Aligned_cols=50 Identities=8% Similarity=0.066 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003315 725 ASVFWNEMKEMGIRPDVI-SYTVLIAKLCNTQNLEDGITVFNEISDRGLEP 774 (831)
Q Consensus 725 a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 774 (831)
+..+|.-|...|+.-... .|......+-..|++.+|.++|+.-++.+-.|
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344555555444444332 44444444555555555555555555444444
No 284
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=38.94 E-value=92 Score=23.69 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HhCCCCCCHHHHHHHHHHHH
Q 003315 760 GITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEM-----SVKGIQGDDYTKSSLERGIE 822 (831)
Q Consensus 760 A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~g~~pd~~~~~~l~~~~~ 822 (831)
|.++.++....|+.|+..+..-++..|...+- + +.++.+++ ...|..|...+.+.+-+-+.
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FEhEvl 93 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFEHEFL 93 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 34444445555666666555555555554443 1 22222221 23356666666666555443
No 285
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.61 E-value=2.3e+02 Score=25.03 Aligned_cols=72 Identities=10% Similarity=0.101 Sum_probs=44.2
Q ss_pred HHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCC
Q 003315 662 MIHGYC---KINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIR 738 (831)
Q Consensus 662 l~~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 738 (831)
+|+++- |-.+.+.|+-.+-+|++.| .|..+.-..++-+..-+|+ .......-|...++.....|.+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl----------AdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL----------GNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG----------GCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC----------CCHHHHHHHHHHHHHHHHhCCC
Confidence 444443 4577888888888888888 7777777777777766554 1112233455555555566644
Q ss_pred CCHHHH
Q 003315 739 PDVISY 744 (831)
Q Consensus 739 p~~~~~ 744 (831)
--....
T Consensus 86 E~~i~L 91 (204)
T 2r9g_A 86 EARIPL 91 (204)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 433333
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.17 E-value=2.6e+02 Score=27.65 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=12.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 003315 490 VLAGAFAQYGAVQKAFDLLNYMK 512 (831)
Q Consensus 490 ~l~~~~~~~g~~~~a~~~~~~~~ 512 (831)
.++.-|...|+.++|...++++.
T Consensus 222 ~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 222 MLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHhccCCCHHHHHHHHHHcc
Confidence 34455555566666666665553
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.11 E-value=2.3e+02 Score=26.04 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 343 PDVYAYSALISGYCKFGKINKALLLHHEMT 372 (831)
Q Consensus 343 p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 372 (831)
++.......+..+.+.|+.++|.++|=+..
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 345555556677777777777777765543
No 288
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=32.65 E-value=5e+02 Score=27.99 Aligned_cols=86 Identities=7% Similarity=-0.059 Sum_probs=41.0
Q ss_pred CCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH
Q 003315 165 GSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV 244 (831)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 244 (831)
+.+.....-......+.+.+++...+.++.. .+.+...--....+....|+..+|......+-..| ...+..+.
T Consensus 67 ~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~ 140 (618)
T 1qsa_A 67 TLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACD 140 (618)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHH
T ss_pred CChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHH
Confidence 3344444444555555555665555543332 12233333334455555666555555555544433 23444555
Q ss_pred HHHHHHHhcCCh
Q 003315 245 IVIKALCKKGSM 256 (831)
Q Consensus 245 ~l~~~~~~~g~~ 256 (831)
.++..+.+.|..
T Consensus 141 ~l~~~~~~~g~l 152 (618)
T 1qsa_A 141 KLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHTTCS
T ss_pred HHHHHHHHCCCC
Confidence 555555555543
No 289
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=32.51 E-value=3.5e+02 Score=26.12 Aligned_cols=48 Identities=10% Similarity=0.037 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 758 EDGITVFNEISDRGLEPD--TVTYTALLCGYLAKGDLDRAIALVDEMSVK 805 (831)
Q Consensus 758 ~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 805 (831)
.+.+++--.+-...+.|. .-+...-+....+.+++..|..+.+++++.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel 236 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKI 236 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444455444444444443 223344455566666666666666666663
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=31.30 E-value=2.1e+02 Score=26.54 Aligned_cols=17 Identities=0% Similarity=0.094 Sum_probs=8.2
Q ss_pred HHHHHHhcCChHHHHHH
Q 003315 246 VIKALCKKGSMQEAVEV 262 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~ 262 (831)
.+...++.|+.+....+
T Consensus 8 ~L~~A~~~g~~~~v~~L 24 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQL 24 (285)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 33444566665444333
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.89 E-value=3e+02 Score=28.76 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=16.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 486 ITYNVLAGAFAQYGAVQKAFDLLNYMK 512 (831)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 512 (831)
..+|.+++.|...+.++.|..+..+..
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 345556666666666666666666653
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.76 E-value=3.1e+02 Score=25.13 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=13.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHH
Q 003315 175 AMIKAYVSVGMFDEGIDILFQIN 197 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~ 197 (831)
.-+..+....++++|+...++..
T Consensus 23 deLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555566666666666666543
No 293
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.49 E-value=61 Score=31.37 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 555 SAMINGYCKTGHTKEAFQLFMRLS 578 (831)
Q Consensus 555 ~~l~~~~~~~g~~~~A~~~~~~~~ 578 (831)
+.++.-|...|+.++|...++++.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC
Confidence 445666666677777777776663
No 294
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=28.94 E-value=1.4e+02 Score=27.94 Aligned_cols=78 Identities=13% Similarity=0.059 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHH
Q 003315 726 SVFWNEMKEMGIRPDVIS--YTVLIAKLCNTQNLEDGITVFNEISDRGLEPDT---VTYTALLCGYLAKGDLDRAIALVD 800 (831)
Q Consensus 726 ~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~---~~~~~l~~~~~~~g~~~~A~~~~~ 800 (831)
.++.+.+.+.|..++... -.+.+...++.|+.+-+..+++. .|..++. .-.+.|- .....|+.+ +++
T Consensus 199 ~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~-~A~~~~~~~----i~~ 270 (285)
T 1wdy_A 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKK----IAE 270 (285)
T ss_dssp HHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHH-HHHHTTCHH----HHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHH-HHHHcCcHH----HHH
Confidence 455556666666655421 11223334566776544433331 3444332 1122232 223445543 344
Q ss_pred HHHhCCCCCCH
Q 003315 801 EMSVKGIQGDD 811 (831)
Q Consensus 801 ~~~~~g~~pd~ 811 (831)
-+.+.|..|+.
T Consensus 271 ~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 271 LLCKRGASTDC 281 (285)
T ss_dssp HHHHHSSCSCC
T ss_pred HHHHcCCCCCc
Confidence 45566666653
No 295
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.62 E-value=2e+02 Score=24.13 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=28.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 003315 336 MEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKG 394 (831)
Q Consensus 336 ~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 394 (831)
+.+.|.. ....-..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 18 l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3444544 233344445555555555566666666665555555555554444444444
No 296
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=25.52 E-value=5.2e+02 Score=25.89 Aligned_cols=29 Identities=14% Similarity=-0.057 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQIN 197 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 197 (831)
-..+...|++.|.+.|+.++..+++....
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45678889999999999998888877654
No 297
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.73 E-value=1.5e+02 Score=25.91 Aligned_cols=25 Identities=8% Similarity=-0.060 Sum_probs=12.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH
Q 003315 667 CKINCLREARDVFNDMKQRGITPDV 691 (831)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~~~~~p~~ 691 (831)
+..|+.+.-.++.+-+++.|..+|.
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHcCCcchHHHHHHHHHHCCCCCCC
Confidence 3445444445555555556655543
No 298
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.29 E-value=3e+02 Score=27.29 Aligned_cols=25 Identities=4% Similarity=0.015 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 624 YDKLIGALCQAEEMEQAQLVFNVLV 648 (831)
Q Consensus 624 ~~~l~~~~~~~g~~~~A~~~~~~~~ 648 (831)
...++.-|...|+.++|...++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4667888889999999999998875
No 299
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.12 E-value=2.1e+02 Score=23.79 Aligned_cols=44 Identities=9% Similarity=-0.035 Sum_probs=20.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 003315 351 LISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKG 394 (831)
Q Consensus 351 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 394 (831)
++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33444444444555555555555544444444444444444433
No 300
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.70 E-value=3.3e+02 Score=31.43 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 003315 312 AYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDV----YAYSALISGYCKFG 359 (831)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~ 359 (831)
-|..++..|-+.+-++-+.+.-+..++.--..|. ..|..+..+.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5788899999999999999888888864222233 35666777666544
No 301
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.65 E-value=1.2e+02 Score=22.69 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQIN 197 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 197 (831)
.++.+.-.+..+.+.|+|++|++.++++.
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 35677888999999999999999888754
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.53 E-value=3.9e+02 Score=25.71 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=31.7
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 003315 454 TTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGA--VQKAFDLLNYMKRHGLEP 518 (831)
Q Consensus 454 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~ 518 (831)
..++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 34566677778888888887776421111 11122222333333222 344556666666555443
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.22 E-value=2.2e+02 Score=23.06 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCC
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGK--INKALLLHHEMTSKGIK 377 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~--~~~A~~~~~~~~~~~~~ 377 (831)
..++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34555566666666666666665421111 12222333333333221 34455555555555443
No 304
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.13 E-value=7.5e+02 Score=26.87 Aligned_cols=81 Identities=10% Similarity=0.126 Sum_probs=38.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD--- 322 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 322 (831)
...++.-.|+++.|++.+-+. ...+.+.+...+.-| |-+... +.+...+......-+..||..|++
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~---gLL~~~----~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL---KLFKID----SSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT---TC---------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc---CCccCC----CcccccCCCcccccHHHHHHHHHHHhh
Confidence 344556688999998877643 133444443333332 222211 111111100112236667777775
Q ss_pred cCCHhHHHHHHHHHH
Q 003315 323 QNKLEKAECVLLHME 337 (831)
Q Consensus 323 ~g~~~~A~~~~~~~~ 337 (831)
..+..+|.++|-.+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 467788888777763
No 305
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.96 E-value=4.1e+02 Score=23.73 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=47.3
Q ss_pred HHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCC
Q 003315 661 MMIHGYC---KINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGI 737 (831)
Q Consensus 661 ~l~~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 737 (831)
-+|+++- |-.+.+.|+-.+-+|++.|-.|..+.--.++-+..-+|+ .......-|...++.....|.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl----------AdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL----------ADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG----------GSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC----------CCHHHHHHHHHHHHHHHHhCC
Confidence 3455554 457788888888899888888887777777777766654 112233445556666666675
Q ss_pred CCCHHHH
Q 003315 738 RPDVISY 744 (831)
Q Consensus 738 ~p~~~~~ 744 (831)
+--....
T Consensus 107 PE~~i~L 113 (213)
T 3ctd_A 107 PEGLFFL 113 (213)
T ss_dssp TTTHHHH
T ss_pred CHHHHHH
Confidence 4433333
No 306
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.67 E-value=1e+02 Score=20.96 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=30.2
Q ss_pred CCCChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCC
Q 003315 80 SYLNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHN 116 (831)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~ 116 (831)
+.++...+-.+|....|+.+.|...+..+...++.|+
T Consensus 21 P~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 21 PNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp SSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 5677888888899999999999999988876655554
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.52 E-value=3.1e+02 Score=22.69 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS 255 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (831)
-..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 344455555555555566666666554433444444444445544443
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.45 E-value=4.7e+02 Score=30.15 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH----hhHHHHHHHHHhcC
Q 003315 382 VLSVILKGLCQKGMASATIKQFLEFKDMGFFLNK----VCYDVIVDSLCKLG 429 (831)
Q Consensus 382 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 429 (831)
-|..++..+.+.+.++.+++.-+.....-..-|. ..+..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5667777777788888887777776654322222 35666666666554
No 309
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.34 E-value=4.1e+02 Score=23.48 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=31.3
Q ss_pred HHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccc
Q 003315 662 MIHGYC---KINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINL 706 (831)
Q Consensus 662 l~~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 706 (831)
+|+++- |-.+.+.|+-.+-+|++.|-.|..+.--.++-+...+|+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 444443 446778888888888888877777777777777666554
No 310
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.34 E-value=1.7e+02 Score=26.89 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=8.8
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 003315 426 CKLGEVEKAMILFKEMKD 443 (831)
Q Consensus 426 ~~~g~~~~A~~~~~~~~~ 443 (831)
++.|+.+....+++.+.+
T Consensus 13 ~~~g~~~~v~~ll~~l~~ 30 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLT 30 (260)
T ss_dssp HHHTCGGGGTTHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 344555555555554433
No 311
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.25 E-value=3.8e+02 Score=22.76 Aligned_cols=52 Identities=4% Similarity=-0.065 Sum_probs=34.8
Q ss_pred hcCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHh
Q 003315 322 DQNKLEKAECVLLHMEKQGVVP--DVYAYSALIS-G-----YCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~-~-----~~~~~~~~~A~~~~~~~~~ 373 (831)
..|++=+|-++|+.+-.....+ ....|..||+ + ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888888877664444 4455666666 2 2356788888877777654
No 312
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.14 E-value=4.1e+02 Score=23.03 Aligned_cols=176 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 003315 166 STLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI 245 (831)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (831)
...++..-...+..+...+. ..+...+.+++. .++...-...+.++.+.+..+....+.+.+.. ++...-..
T Consensus 24 ~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d----~~~~vr~~ 95 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKD----EDGWVRQS 95 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC----CCHHHHHH
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
.+.++.+.|+.+....+.+.+. .++...-...+.++.+.++ .++...+..+.... +..+....+.++.+.|.
T Consensus 96 a~~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d~---~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 96 AAVALGQIGDERAVEPLIKALK----DEDWFVRIAAAFALGEIGD-ERAVEPLIKALKDE---DGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHTC-GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhCcHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCc
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 326 LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKI 361 (831)
Q Consensus 326 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 361 (831)
-+....+.+.+... +..+-...+.+..+.+..
T Consensus 168 ~~~~~~L~~~l~d~----~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 168 ERVRAAMEKLAETG----TGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHHHHHHHHHC----CHHHHHHHHHHHHHCC--
T ss_pred hhHHHHHHHHHhCC----CHHHHHHHHHHHHHHHhh
No 313
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.01 E-value=2.8e+02 Score=21.14 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 003315 723 VDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEIS-----DRGLEPDTVTYTAL 782 (831)
Q Consensus 723 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~pd~~~~~~l 782 (831)
..|.++.++....|+.|+..+...++..|...+- + +.++.++.. ..|..|+..+.+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 3467788888889999999988999887776663 2 555444433 23667776665444
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.90 E-value=2e+02 Score=23.46 Aligned_cols=44 Identities=9% Similarity=0.042 Sum_probs=20.3
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 003315 351 LISGYCKFG-KINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKG 394 (831)
Q Consensus 351 li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 394 (831)
++..+...+ ..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 334444443 44455555555555544444444444444444333
No 315
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=20.34 E-value=5.8e+02 Score=24.56 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=14.1
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 003315 667 CKINCLREARDVFNDMKQ 684 (831)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~ 684 (831)
...|++++|+..|+..+.
T Consensus 113 ~t~gKf~eAl~~Fr~iL~ 130 (320)
T 3mkr_B 113 TTVGKFEEAVEKFRSILL 130 (320)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 467888888888888764
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.28 E-value=5.1e+02 Score=26.57 Aligned_cols=84 Identities=14% Similarity=0.068 Sum_probs=47.6
Q ss_pred cCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003315 183 VGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEV 262 (831)
Q Consensus 183 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (831)
.++.+-|+.+ +.+.|.+.-...|..-.+.+...|++++|.++--...+ |+-.++.|.+.+-..=..-|+..--+..
T Consensus 342 l~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 3566666555 33445554455566666777778888887777655433 3334555554443333334555556666
Q ss_pred HHHHHhCC
Q 003315 263 FLEMEKAG 270 (831)
Q Consensus 263 ~~~m~~~~ 270 (831)
|..+.+.|
T Consensus 418 F~~Ll~~g 425 (494)
T 1bpo_A 418 FGILLDQG 425 (494)
T ss_dssp HHHHHHHS
T ss_pred HHHHhccC
Confidence 66666554
No 317
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.10 E-value=3.5e+02 Score=21.87 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 003315 419 DVIVDSLCKLGEVEKAMILFKEM 441 (831)
Q Consensus 419 ~~l~~~~~~~g~~~~A~~~~~~~ 441 (831)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 33444444445555555544444
No 318
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.10 E-value=3.1e+02 Score=23.03 Aligned_cols=100 Identities=13% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003315 454 TTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQ--YGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLC 531 (831)
Q Consensus 454 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 531 (831)
..++.-|...|+.++|.+.++++...... .......+..++-+ ....+.+..++..+.+.++-+.......+...+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl- 90 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY- 90 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH-
Q ss_pred cCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhc
Q 003315 532 MGGRVEEAEAFLDGLKGKCLENYSAMINGYCKT 564 (831)
Q Consensus 532 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 564 (831)
..+..+.-.-|..+..+.....+.
T Consensus 91 ---------~~ldDl~lDiP~A~~~la~~v~~a 114 (152)
T 2ion_A 91 ---------NEIPDINLDVPHSYSVLERFVEEC 114 (152)
T ss_dssp ---------HHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred ---------HhChHhccCccchHHHHHHHHHHH
Done!