Query 003316
Match_columns 831
No_of_seqs 297 out of 2310
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 21:12:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0469 Elongation factor 2 [T 100.0 5E-177 1E-181 1393.6 50.4 828 1-831 1-842 (842)
2 PLN00116 translation elongatio 100.0 2E-155 4E-160 1406.5 85.7 828 1-831 1-843 (843)
3 PTZ00416 elongation factor 2; 100.0 5E-154 1E-158 1390.5 82.8 822 1-831 1-836 (836)
4 KOG0468 U5 snRNP-specific prot 100.0 6E-141 1E-145 1150.4 57.5 812 3-830 112-954 (971)
5 PRK07560 elongation factor EF- 100.0 5E-127 1E-131 1147.0 69.6 708 5-829 6-731 (731)
6 COG0480 FusA Translation elong 100.0 1E-124 2E-129 1091.3 60.1 655 16-817 7-697 (697)
7 KOG0467 Translation elongation 100.0 6E-124 1E-128 1037.1 43.0 791 13-831 3-884 (887)
8 TIGR00490 aEF-2 translation el 100.0 2E-121 4E-126 1096.0 66.4 700 5-820 5-720 (720)
9 KOG0465 Mitochondrial elongati 100.0 1E-122 2E-127 1007.2 40.3 649 17-809 37-719 (721)
10 PRK12739 elongation factor G; 100.0 2E-112 5E-117 1015.9 65.2 653 16-810 5-687 (691)
11 PRK00007 elongation factor G; 100.0 1E-111 3E-116 1008.2 64.2 654 16-810 7-690 (693)
12 TIGR00484 EF-G translation elo 100.0 3E-109 6E-114 989.7 62.0 651 15-810 6-687 (689)
13 PRK13351 elongation factor G; 100.0 2E-106 5E-111 967.5 64.2 649 16-808 5-685 (687)
14 PRK12740 elongation factor G; 100.0 9E-100 2E-104 909.6 60.6 629 25-797 1-662 (668)
15 KOG0464 Elongation factor G [T 100.0 4.4E-93 9.5E-98 739.9 30.1 646 17-796 35-740 (753)
16 TIGR01394 TypA_BipA GTP-bindin 100.0 2.4E-75 5.1E-80 678.2 48.4 452 19-797 1-475 (594)
17 PRK10218 GTP-binding protein; 100.0 1.2E-73 2.7E-78 662.2 47.5 453 17-796 3-479 (607)
18 PRK05433 GTP-binding protein L 100.0 1.8E-72 3.9E-77 656.7 47.8 476 14-812 2-519 (600)
19 TIGR01393 lepA GTP-binding pro 100.0 2.1E-71 4.6E-76 647.1 49.2 474 17-812 1-516 (595)
20 COG1217 TypA Predicted membran 100.0 8.6E-65 1.9E-69 538.5 36.5 454 17-797 3-479 (603)
21 PRK00741 prfC peptide chain re 100.0 5E-64 1.1E-68 576.6 37.9 426 13-557 4-472 (526)
22 TIGR00503 prfC peptide chain r 100.0 3.1E-62 6.6E-67 561.9 36.8 424 11-552 3-468 (527)
23 KOG0462 Elongation factor-type 100.0 1.6E-62 3.5E-67 531.2 31.2 455 17-791 58-532 (650)
24 COG0481 LepA Membrane GTPase L 100.0 4.3E-58 9.3E-63 489.0 33.9 458 15-792 5-483 (603)
25 COG4108 PrfC Peptide chain rel 100.0 6.7E-50 1.4E-54 423.6 22.3 423 15-550 8-467 (528)
26 cd01683 EF2_IV_snRNP EF-2_doma 100.0 3.9E-38 8.5E-43 312.1 18.2 174 547-720 1-178 (178)
27 cd01885 EF2 EF2 (for archaea a 100.0 8.6E-38 1.9E-42 322.2 20.2 192 20-217 1-209 (222)
28 cd01886 EF-G Elongation factor 100.0 3.6E-34 7.8E-39 304.6 21.0 244 21-331 1-270 (270)
29 cd01681 aeEF2_snRNP_like_IV Th 100.0 1E-32 2.2E-37 275.6 18.0 173 547-719 1-177 (177)
30 cd04169 RF3 RF3 subfamily. Pe 100.0 1.7E-31 3.6E-36 283.9 19.6 236 18-331 1-267 (267)
31 cd04168 TetM_like Tet(M)-like 100.0 6.3E-31 1.4E-35 275.0 21.1 211 21-331 1-237 (237)
32 CHL00071 tufA elongation facto 100.0 2.6E-30 5.6E-35 292.0 27.4 289 10-459 3-307 (409)
33 COG5256 TEF1 Translation elong 100.0 4.8E-29 1E-33 266.4 27.8 273 15-456 3-312 (428)
34 PRK12736 elongation factor Tu; 100.0 8.3E-29 1.8E-33 278.3 26.1 275 14-459 7-297 (394)
35 PLN00043 elongation factor 1-a 100.0 1.6E-28 3.5E-33 278.5 27.0 277 15-458 3-317 (447)
36 PLN03126 Elongation factor Tu; 100.0 2.5E-28 5.5E-33 277.8 26.9 295 4-459 66-376 (478)
37 PRK12735 elongation factor Tu; 100.0 3.2E-28 7E-33 273.8 26.8 281 10-459 3-299 (396)
38 cd04170 EF-G_bact Elongation f 100.0 1.2E-28 2.7E-33 263.6 19.2 240 21-331 1-268 (268)
39 TIGR00485 EF-Tu translation el 100.0 8.8E-28 1.9E-32 270.5 26.5 275 13-458 6-296 (394)
40 PRK00049 elongation factor Tu; 100.0 2.1E-27 4.5E-32 267.0 26.8 280 11-459 4-299 (396)
41 PTZ00141 elongation factor 1- 100.0 1.9E-27 4E-32 270.1 26.5 277 15-458 3-317 (446)
42 cd04167 Snu114p Snu114p subfam 100.0 8.9E-28 1.9E-32 248.3 19.7 185 20-217 1-200 (213)
43 PRK05306 infB translation init 100.0 9.1E-27 2E-31 276.6 29.8 302 17-525 288-628 (787)
44 PLN03127 Elongation factor Tu; 99.9 4.9E-26 1.1E-30 258.1 28.5 277 15-458 57-349 (447)
45 TIGR02034 CysN sulfate adenyly 99.9 4.4E-26 9.5E-31 257.1 26.3 115 21-151 2-146 (406)
46 PRK05124 cysN sulfate adenylyl 99.9 8.3E-26 1.8E-30 258.6 27.3 120 16-151 24-173 (474)
47 PRK12317 elongation factor 1-a 99.9 6.2E-26 1.3E-30 258.4 25.3 273 17-458 4-309 (425)
48 TIGR00483 EF-1_alpha translati 99.9 1.5E-25 3.2E-30 255.3 26.1 276 14-458 2-311 (426)
49 KOG0460 Mitochondrial translat 99.9 4.1E-26 9E-31 235.4 14.7 277 15-460 50-342 (449)
50 TIGR00487 IF-2 translation ini 99.9 4.5E-24 9.7E-29 248.5 31.0 292 18-509 86-418 (587)
51 COG0050 TufB GTPases - transla 99.9 6.6E-25 1.4E-29 222.6 18.0 276 12-458 5-296 (394)
52 PTZ00327 eukaryotic translatio 99.9 5.9E-24 1.3E-28 240.5 24.7 122 17-151 32-184 (460)
53 KOG0458 Elongation factor 1 al 99.9 4.3E-24 9.4E-29 235.9 22.5 276 15-456 173-487 (603)
54 CHL00189 infB translation init 99.9 1.2E-23 2.6E-28 247.8 27.1 306 17-525 242-583 (742)
55 PRK05506 bifunctional sulfate 99.9 3.3E-23 7.2E-28 246.6 26.5 118 18-151 23-170 (632)
56 PF00009 GTP_EFTU: Elongation 99.9 1E-24 2.2E-29 221.0 10.9 158 17-208 1-175 (188)
57 PRK04000 translation initiatio 99.9 6.1E-22 1.3E-26 223.5 25.5 124 15-151 5-152 (411)
58 cd01884 EF_Tu EF-Tu subfamily. 99.9 6.8E-23 1.5E-27 208.0 13.6 155 19-206 2-169 (195)
59 PRK10512 selenocysteinyl-tRNA- 99.9 1.1E-21 2.4E-26 230.3 24.4 103 21-151 2-117 (614)
60 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 3.2E-23 7E-28 178.7 7.6 80 715-794 1-80 (80)
61 COG2895 CysN GTPases - Sulfate 99.9 5.6E-22 1.2E-26 206.6 16.8 319 17-511 4-354 (431)
62 TIGR03680 eif2g_arch translati 99.9 4.9E-21 1.1E-25 216.3 25.7 121 18-151 3-147 (406)
63 cd04166 CysN_ATPS CysN_ATPS su 99.9 4.5E-22 9.7E-27 204.9 14.2 115 21-151 1-143 (208)
64 COG5257 GCD11 Translation init 99.9 1.9E-20 4.1E-25 192.7 24.5 138 17-173 8-169 (415)
65 cd01883 EF1_alpha Eukaryotic e 99.9 1.3E-21 2.9E-26 203.0 13.0 115 21-151 1-150 (219)
66 TIGR00475 selB selenocysteine- 99.8 8.7E-20 1.9E-24 213.9 24.4 102 21-151 2-116 (581)
67 PF00679 EFG_C: Elongation fac 99.8 5.2E-21 1.1E-25 168.9 8.3 85 712-797 1-85 (89)
68 smart00838 EFG_C Elongation fa 99.8 4E-21 8.7E-26 168.2 6.9 83 713-797 1-83 (85)
69 cd04096 eEF2_snRNP_like_C eEF2 99.8 1.8E-20 3.9E-25 162.2 8.0 80 715-794 1-80 (80)
70 KOG0459 Polypeptide release fa 99.8 4.3E-20 9.3E-25 195.1 12.1 141 16-178 76-251 (501)
71 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 2.5E-20 5.5E-25 160.3 7.5 78 715-794 1-78 (78)
72 PF03764 EFG_IV: Elongation fa 99.8 6.3E-20 1.4E-24 171.8 10.2 99 610-710 22-120 (120)
73 KOG1145 Mitochondrial translat 99.8 7.5E-19 1.6E-23 192.1 19.0 114 18-166 152-277 (683)
74 cd03711 Tet_C Tet_C: C-terminu 99.8 4.2E-20 9.2E-25 158.9 6.7 78 715-794 1-78 (78)
75 cd01891 TypA_BipA TypA (tyrosi 99.8 6E-19 1.3E-23 179.7 15.7 132 18-169 1-144 (194)
76 PF14492 EFG_II: Elongation Fa 99.8 7.2E-20 1.6E-24 155.5 7.1 73 473-547 2-75 (75)
77 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 9.2E-20 2E-24 157.0 6.9 78 715-794 1-78 (78)
78 COG0532 InfB Translation initi 99.8 5.7E-18 1.2E-22 187.9 21.5 118 18-168 4-133 (509)
79 cd03710 BipA_TypA_C BipA_TypA_ 99.8 2.8E-19 6.1E-24 154.0 8.0 78 715-793 1-78 (79)
80 COG3276 SelB Selenocysteine-sp 99.8 5.4E-18 1.2E-22 183.4 19.7 102 21-151 2-116 (447)
81 PRK04004 translation initiatio 99.8 2E-17 4.3E-22 193.6 25.3 119 17-151 4-136 (586)
82 cd01514 Elongation_Factor_C El 99.8 4E-19 8.7E-24 153.4 7.3 79 715-794 1-79 (79)
83 cd01890 LepA LepA subfamily. 99.8 4.8E-18 1E-22 170.2 15.9 120 20-151 1-132 (179)
84 cd03709 lepA_C lepA_C: This fa 99.8 1.3E-18 2.7E-23 150.2 7.0 78 715-793 1-79 (80)
85 cd01888 eIF2_gamma eIF2-gamma 99.7 7.8E-18 1.7E-22 172.7 11.8 119 20-151 1-150 (203)
86 COG5258 GTPBP1 GTPase [General 99.7 8E-17 1.7E-21 169.4 17.7 287 16-456 114-434 (527)
87 KOG0461 Selenocysteine-specifi 99.7 1.5E-16 3.2E-21 164.9 18.5 117 19-151 7-135 (522)
88 cd04090 eEF2_II_snRNP Loc2 eEF 99.7 5E-17 1.1E-21 145.0 11.4 94 364-457 1-94 (94)
89 TIGR00491 aIF-2 translation in 99.7 2.2E-15 4.8E-20 175.6 26.9 117 19-151 4-134 (590)
90 cd01889 SelB_euk SelB subfamil 99.7 5.8E-16 1.2E-20 157.4 15.3 120 21-151 2-133 (192)
91 cd03690 Tet_II Tet_II: This su 99.7 1.8E-16 4E-21 138.5 9.9 82 362-456 2-84 (85)
92 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.7E-16 3.8E-21 164.6 10.4 128 21-151 1-151 (224)
93 cd01684 Tet_like_IV EF-G_domai 99.7 1.2E-15 2.5E-20 141.3 12.8 112 550-710 1-115 (115)
94 cd04092 mtEFG2_II_like mtEFG2_ 99.6 1.5E-15 3.3E-20 132.3 9.9 82 364-457 1-83 (83)
95 cd00881 GTP_translation_factor 99.6 4.7E-15 1E-19 149.3 13.8 115 21-151 1-127 (189)
96 cd03689 RF3_II RF3_II: this su 99.6 4.4E-15 9.5E-20 129.6 9.3 80 366-457 1-84 (85)
97 cd01680 EFG_like_IV Elongation 99.6 8E-15 1.7E-19 136.4 11.7 77 632-710 40-116 (116)
98 cd03700 eEF2_snRNP_like_II EF2 99.6 9.5E-15 2E-19 130.1 11.1 91 364-457 1-92 (93)
99 cd04088 EFG_mtEFG_II EFG_mtEFG 99.6 7.5E-15 1.6E-19 128.0 9.8 81 364-456 1-82 (83)
100 cd04091 mtEFG1_II_like mtEFG1_ 99.6 1.1E-14 2.4E-19 126.3 9.9 79 364-456 1-80 (81)
101 cd04171 SelB SelB subfamily. 99.5 4E-14 8.6E-19 139.1 12.8 103 21-151 2-117 (164)
102 cd03691 BipA_TypA_II BipA_TypA 99.5 5.7E-14 1.2E-18 123.3 10.0 84 364-456 1-85 (86)
103 PRK14845 translation initiatio 99.5 4.7E-12 1E-16 154.5 27.1 104 32-151 474-591 (1049)
104 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.5 7.1E-14 1.5E-18 129.9 8.7 76 632-710 40-116 (116)
105 cd03699 lepA_II lepA_II: This 99.5 2E-13 4.4E-18 119.7 9.4 81 364-457 1-86 (86)
106 cd01693 mtEFG2_like_IV mtEF-G2 99.4 6.9E-13 1.5E-17 124.1 9.2 116 550-710 1-120 (120)
107 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 1.9E-12 4.1E-17 127.9 12.4 102 21-151 2-115 (168)
108 cd04160 Arfrp1 Arfrp1 subfamil 99.4 4.3E-12 9.4E-17 125.4 12.2 103 21-151 1-120 (167)
109 PRK00093 GTP-binding protein D 99.4 5.6E-12 1.2E-16 144.7 14.6 103 18-151 172-297 (435)
110 COG1159 Era GTPase [General fu 99.4 7E-12 1.5E-16 130.7 13.7 102 19-151 6-127 (298)
111 COG1160 Predicted GTPases [Gen 99.3 2.9E-12 6.2E-17 140.7 10.5 103 18-151 177-302 (444)
112 COG2229 Predicted GTPase [Gene 99.3 1.1E-11 2.5E-16 119.8 11.4 119 19-162 10-141 (187)
113 KOG0463 GTP-binding protein GP 99.3 5.4E-12 1.2E-16 132.5 9.5 295 20-460 134-457 (641)
114 TIGR03594 GTPase_EngA ribosome 99.3 8.7E-12 1.9E-16 142.9 11.6 102 19-151 172-296 (429)
115 cd01864 Rab19 Rab19 subfamily. 99.3 1.3E-11 2.8E-16 121.9 10.4 103 19-151 3-121 (165)
116 KOG0466 Translation initiation 99.3 2.4E-12 5.2E-17 132.0 5.1 122 17-151 36-192 (466)
117 PRK09554 feoB ferrous iron tra 99.3 1.2E-10 2.6E-15 140.4 20.1 100 20-151 4-125 (772)
118 cd01895 EngA2 EngA2 subfamily. 99.3 4E-11 8.6E-16 118.5 13.1 102 19-151 2-126 (174)
119 cd01894 EngA1 EngA1 subfamily. 99.3 1.9E-11 4.1E-16 119.0 9.5 98 23-151 1-118 (157)
120 PRK15494 era GTPase Era; Provi 99.2 3.8E-11 8.3E-16 132.6 12.7 103 18-151 51-173 (339)
121 COG1160 Predicted GTPases [Gen 99.2 2.5E-11 5.3E-16 133.4 10.9 101 20-151 4-125 (444)
122 KOG1144 Translation initiation 99.2 1.9E-11 4E-16 138.0 9.2 121 19-155 475-609 (1064)
123 PRK03003 GTP-binding protein D 99.2 3.5E-10 7.6E-15 130.8 20.1 103 18-151 210-335 (472)
124 cd04105 SR_beta Signal recogni 99.2 9.9E-11 2.1E-15 120.1 13.5 118 20-172 1-140 (203)
125 PRK15467 ethanolamine utilizat 99.2 4.3E-11 9.4E-16 117.7 10.3 89 20-151 2-104 (158)
126 cd04164 trmE TrmE (MnmE, ThdF, 99.2 4.3E-11 9.2E-16 116.4 9.6 100 21-151 3-120 (157)
127 smart00178 SAR Sar1p-like memb 99.2 1.3E-10 2.9E-15 117.2 13.3 109 8-151 6-131 (184)
128 PF10662 PduV-EutP: Ethanolami 99.2 4.4E-11 9.6E-16 113.4 9.0 88 20-151 2-102 (143)
129 cd04151 Arl1 Arl1 subfamily. 99.2 9.8E-11 2.1E-15 114.8 11.3 96 21-151 1-113 (158)
130 cd04157 Arl6 Arl6 subfamily. 99.2 9.2E-11 2E-15 115.1 10.9 98 21-151 1-117 (162)
131 cd04114 Rab30 Rab30 subfamily. 99.2 9.2E-11 2E-15 116.1 10.7 108 14-151 2-125 (169)
132 PRK03003 GTP-binding protein D 99.2 1.3E-10 2.9E-15 134.2 12.4 115 6-151 24-159 (472)
133 cd01898 Obg Obg subfamily. Th 99.2 1.8E-10 3.9E-15 114.0 11.7 100 21-151 2-127 (170)
134 cd01879 FeoB Ferrous iron tran 99.2 4.5E-11 9.8E-16 116.7 7.2 96 24-151 1-114 (158)
135 cd00879 Sar1 Sar1 subfamily. 99.2 2.2E-10 4.7E-15 116.0 12.2 108 9-151 9-133 (190)
136 TIGR00436 era GTP-binding prot 99.2 2.1E-10 4.6E-15 123.0 12.6 100 21-151 2-120 (270)
137 cd04115 Rab33B_Rab33A Rab33B/R 99.2 1.3E-10 2.7E-15 115.7 10.2 103 19-151 2-122 (170)
138 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 3.5E-10 7.5E-15 113.0 13.4 107 9-151 6-129 (174)
139 cd04124 RabL2 RabL2 subfamily. 99.2 2.2E-10 4.8E-15 112.9 11.8 101 21-151 2-117 (161)
140 cd04145 M_R_Ras_like M-Ras/R-R 99.2 1.7E-10 3.6E-15 113.5 10.9 101 20-151 3-120 (164)
141 PF02421 FeoB_N: Ferrous iron 99.2 1.3E-10 2.7E-15 112.9 9.7 99 21-151 2-118 (156)
142 TIGR03594 GTPase_EngA ribosome 99.2 8.7E-11 1.9E-15 134.7 10.1 100 21-151 1-120 (429)
143 smart00175 RAB Rab subfamily o 99.1 2.5E-10 5.5E-15 112.1 11.8 101 21-151 2-118 (164)
144 cd04161 Arl2l1_Arl13_like Arl2 99.1 2.4E-10 5.2E-15 113.4 11.0 96 21-151 1-113 (167)
145 cd04154 Arl2 Arl2 subfamily. 99.1 3.8E-10 8.2E-15 112.5 12.4 99 18-151 13-128 (173)
146 cd04113 Rab4 Rab4 subfamily. 99.1 1.9E-10 4.1E-15 112.9 9.9 101 21-151 2-118 (161)
147 cd01866 Rab2 Rab2 subfamily. 99.1 2.5E-10 5.4E-15 113.3 10.5 103 19-151 4-122 (168)
148 cd00878 Arf_Arl Arf (ADP-ribos 99.1 2.9E-10 6.3E-15 111.3 10.7 96 21-151 1-113 (158)
149 cd01861 Rab6 Rab6 subfamily. 99.1 2.5E-10 5.4E-15 111.9 10.3 102 20-151 1-118 (161)
150 cd04106 Rab23_lke Rab23-like s 99.1 3.4E-10 7.3E-15 111.1 11.0 103 21-151 2-119 (162)
151 PRK09518 bifunctional cytidyla 99.1 2.3E-10 5E-15 138.5 11.5 103 18-151 449-574 (712)
152 PRK00093 GTP-binding protein D 99.1 2.4E-10 5.1E-15 131.3 10.9 101 20-151 2-122 (435)
153 PF09439 SRPRB: Signal recogni 99.1 2.6E-10 5.6E-15 113.1 9.3 118 19-173 3-144 (181)
154 cd01862 Rab7 Rab7 subfamily. 99.1 3.2E-10 7E-15 112.4 10.1 101 21-151 2-122 (172)
155 cd04159 Arl10_like Arl10-like 99.1 3.6E-10 7.8E-15 109.8 10.2 96 22-151 2-114 (159)
156 cd04149 Arf6 Arf6 subfamily. 99.1 4.9E-10 1.1E-14 111.3 11.2 98 19-151 9-123 (168)
157 TIGR00231 small_GTP small GTP- 99.1 7.4E-10 1.6E-14 106.9 12.2 102 20-151 2-121 (161)
158 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.1 6.5E-10 1.4E-14 112.1 12.1 101 21-151 5-122 (183)
159 cd00154 Rab Rab family. Rab G 99.1 6.7E-10 1.5E-14 107.7 11.8 101 21-151 2-118 (159)
160 TIGR03598 GTPase_YsxC ribosome 99.1 8.2E-10 1.8E-14 110.9 12.4 102 17-151 16-142 (179)
161 cd01860 Rab5_related Rab5-rela 99.1 3.5E-10 7.6E-15 111.1 9.5 101 21-151 3-119 (163)
162 PRK00089 era GTPase Era; Revie 99.1 9.4E-10 2E-14 119.5 13.6 103 18-151 4-126 (292)
163 cd01893 Miro1 Miro1 subfamily. 99.1 1E-09 2.3E-14 108.6 12.8 99 21-151 2-116 (166)
164 PF01926 MMR_HSR1: 50S ribosom 99.1 6.3E-10 1.4E-14 103.3 10.3 96 21-147 1-116 (116)
165 cd01863 Rab18 Rab18 subfamily. 99.1 8E-10 1.7E-14 108.4 11.4 101 21-151 2-119 (161)
166 smart00173 RAS Ras subfamily o 99.1 6.5E-10 1.4E-14 109.4 10.8 100 21-151 2-118 (164)
167 PRK09518 bifunctional cytidyla 99.1 5.7E-10 1.2E-14 135.1 12.1 102 19-151 275-396 (712)
168 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.1 6.4E-10 1.4E-14 109.9 10.3 103 19-151 2-120 (166)
169 TIGR00450 mnmE_trmE_thdF tRNA 99.1 6.2E-10 1.3E-14 126.8 11.4 102 19-151 203-323 (442)
170 cd04158 ARD1 ARD1 subfamily. 99.1 9.2E-10 2E-14 109.4 11.2 96 21-151 1-113 (169)
171 cd01867 Rab8_Rab10_Rab13_like 99.1 6.5E-10 1.4E-14 110.1 10.1 103 19-151 3-121 (167)
172 cd01878 HflX HflX subfamily. 99.1 6.2E-10 1.4E-14 114.1 10.3 104 17-151 39-166 (204)
173 cd04137 RheB Rheb (Ras Homolog 99.1 5.5E-10 1.2E-14 112.0 9.6 101 20-151 2-119 (180)
174 cd04123 Rab21 Rab21 subfamily. 99.1 1.4E-09 3E-14 106.4 12.2 101 21-151 2-118 (162)
175 cd04155 Arl3 Arl3 subfamily. 99.1 1.8E-09 3.8E-14 107.4 13.1 100 17-151 12-128 (173)
176 cd04162 Arl9_Arfrp2_like Arl9/ 99.0 7.2E-10 1.6E-14 109.7 10.0 96 22-151 2-112 (164)
177 cd04163 Era Era subfamily. Er 99.0 2.3E-09 5E-14 104.8 13.3 102 19-151 3-124 (168)
178 cd04119 RJL RJL (RabJ-Like) su 99.0 7.5E-10 1.6E-14 109.0 9.9 101 21-151 2-123 (168)
179 PLN03118 Rab family protein; P 99.0 8.8E-10 1.9E-14 113.8 10.8 102 19-151 14-133 (211)
180 cd04150 Arf1_5_like Arf1-Arf5- 99.0 1.6E-09 3.5E-14 106.5 12.2 96 21-151 2-114 (159)
181 cd04112 Rab26 Rab26 subfamily. 99.0 7.3E-10 1.6E-14 112.5 9.9 102 21-151 2-119 (191)
182 cd01897 NOG NOG1 is a nucleola 99.0 1.3E-09 2.7E-14 107.8 11.3 100 20-151 1-126 (168)
183 cd04122 Rab14 Rab14 subfamily. 99.0 1.2E-09 2.5E-14 108.2 10.8 102 20-151 3-120 (166)
184 cd04175 Rap1 Rap1 subgroup. T 99.0 1.2E-09 2.6E-14 107.6 10.9 100 21-151 3-119 (164)
185 cd04147 Ras_dva Ras-dva subfam 99.0 5.8E-10 1.3E-14 113.9 8.8 100 21-151 1-117 (198)
186 cd00877 Ran Ran (Ras-related n 99.0 9.8E-10 2.1E-14 108.9 10.2 101 21-151 2-117 (166)
187 cd01852 AIG1 AIG1 (avrRpt2-ind 99.0 1.8E-09 3.9E-14 110.1 12.4 102 20-151 1-129 (196)
188 PRK05291 trmE tRNA modificatio 99.0 6.8E-10 1.5E-14 127.2 10.1 101 20-151 216-334 (449)
189 cd04139 RalA_RalB RalA/RalB su 99.0 2.6E-09 5.6E-14 104.8 12.4 100 21-151 2-118 (164)
190 cd04116 Rab9 Rab9 subfamily. 99.0 2.5E-09 5.5E-14 106.0 12.3 104 18-151 4-127 (170)
191 cd04110 Rab35 Rab35 subfamily. 99.0 1.5E-09 3.3E-14 110.9 10.9 104 18-151 5-123 (199)
192 PLN00223 ADP-ribosylation fact 99.0 2.4E-09 5.3E-14 107.7 12.1 99 18-151 16-131 (181)
193 cd00876 Ras Ras family. The R 99.0 1E-09 2.3E-14 107.0 9.0 100 21-151 1-117 (160)
194 cd04101 RabL4 RabL4 (Rab-like4 99.0 2E-09 4.4E-14 105.9 11.1 104 21-151 2-120 (164)
195 PTZ00369 Ras-like protein; Pro 99.0 1E-09 2.3E-14 111.2 9.2 101 20-151 6-123 (189)
196 cd04138 H_N_K_Ras_like H-Ras/N 99.0 2.1E-09 4.5E-14 105.1 11.1 100 21-151 3-119 (162)
197 smart00177 ARF ARF-like small 99.0 3E-09 6.4E-14 106.4 12.3 98 19-151 13-127 (175)
198 TIGR02528 EutP ethanolamine ut 99.0 1.1E-09 2.5E-14 105.2 8.5 87 21-151 2-101 (142)
199 cd04156 ARLTS1 ARLTS1 subfamil 99.0 2E-09 4.4E-14 105.4 10.4 96 22-151 2-114 (160)
200 cd04146 RERG_RasL11_like RERG/ 99.0 1.2E-09 2.5E-14 107.9 8.5 100 21-151 1-119 (165)
201 cd04107 Rab32_Rab38 Rab38/Rab3 99.0 4.9E-09 1.1E-13 107.4 13.3 102 21-151 2-123 (201)
202 cd01865 Rab3 Rab3 subfamily. 99.0 1.7E-09 3.6E-14 106.9 9.4 102 20-151 2-119 (165)
203 cd01868 Rab11_like Rab11-like. 99.0 2.3E-09 5.1E-14 105.6 10.3 103 19-151 3-121 (165)
204 cd00880 Era_like Era (E. coli 99.0 1.8E-09 4E-14 104.2 9.3 98 24-151 1-117 (163)
205 cd04120 Rab12 Rab12 subfamily. 99.0 2.4E-09 5.1E-14 109.6 10.2 101 21-151 2-118 (202)
206 cd01882 BMS1 Bms1. Bms1 is an 99.0 3.9E-09 8.5E-14 110.0 12.0 94 19-151 39-146 (225)
207 cd04136 Rap_like Rap-like subf 99.0 2.8E-09 6.1E-14 104.6 10.3 101 20-151 2-119 (163)
208 TIGR03156 GTP_HflX GTP-binding 99.0 2.3E-09 5E-14 118.7 10.5 102 18-151 188-314 (351)
209 cd04177 RSR1 RSR1 subgroup. R 99.0 3.1E-09 6.8E-14 105.3 10.3 99 21-151 3-119 (168)
210 cd04108 Rab36_Rab34 Rab34/Rab3 99.0 3.3E-09 7.2E-14 105.6 10.5 99 21-151 2-119 (170)
211 PTZ00133 ADP-ribosylation fact 98.9 6.1E-09 1.3E-13 104.9 12.4 97 20-151 18-131 (182)
212 cd04135 Tc10 TC10 subfamily. 98.9 1.3E-09 2.8E-14 108.4 7.4 100 21-151 2-117 (174)
213 COG0486 ThdF Predicted GTPase 98.9 2.9E-09 6.4E-14 117.6 10.5 101 20-151 218-337 (454)
214 cd04127 Rab27A Rab27a subfamil 98.9 4.3E-09 9.4E-14 105.4 10.5 114 18-151 3-133 (180)
215 cd00157 Rho Rho (Ras homology) 98.9 1.9E-09 4.1E-14 106.7 7.7 100 21-151 2-117 (171)
216 cd04140 ARHI_like ARHI subfami 98.9 4E-09 8.6E-14 104.2 9.9 100 21-151 3-121 (165)
217 cd04142 RRP22 RRP22 subfamily. 98.9 2.6E-09 5.7E-14 109.1 8.8 101 21-151 2-129 (198)
218 cd04109 Rab28 Rab28 subfamily. 98.9 4.6E-09 1E-13 108.8 10.7 102 21-151 2-122 (215)
219 PRK04213 GTP-binding protein; 98.9 7.5E-09 1.6E-13 105.8 11.9 100 16-151 6-143 (201)
220 cd04132 Rho4_like Rho4-like su 98.9 7.2E-09 1.6E-13 104.6 11.4 100 21-151 2-118 (187)
221 PLN03110 Rab GTPase; Provision 98.9 5.3E-09 1.2E-13 108.4 10.7 105 17-151 10-130 (216)
222 PLN03071 GTP-binding nuclear p 98.9 4.2E-09 9E-14 109.4 9.8 104 18-151 12-130 (219)
223 cd04121 Rab40 Rab40 subfamily. 98.9 8E-09 1.7E-13 104.7 11.3 105 17-151 4-123 (189)
224 cd04144 Ras2 Ras2 subfamily. 98.9 5.1E-09 1.1E-13 106.2 9.9 100 21-151 1-119 (190)
225 PRK12298 obgE GTPase CgtA; Rev 98.9 1E-08 2.2E-13 115.0 13.1 102 19-151 159-288 (390)
226 KOG0052 Translation elongation 98.9 3.8E-10 8.2E-15 121.6 1.3 119 14-151 2-155 (391)
227 cd04126 Rab20 Rab20 subfamily. 98.9 6E-09 1.3E-13 108.0 10.2 96 21-151 2-113 (220)
228 PRK11058 GTPase HflX; Provisio 98.9 4.2E-09 9.1E-14 119.4 9.7 101 19-151 197-322 (426)
229 cd04118 Rab24 Rab24 subfamily. 98.9 9E-09 2E-13 104.5 10.7 102 21-151 2-118 (193)
230 PF08477 Miro: Miro-like prote 98.9 3.9E-09 8.4E-14 98.1 7.1 101 21-149 1-119 (119)
231 cd04176 Rap2 Rap2 subgroup. T 98.9 8.3E-09 1.8E-13 101.5 9.8 100 21-151 3-119 (163)
232 cd04125 RabA_like RabA-like su 98.9 9.3E-09 2E-13 104.0 10.4 101 21-151 2-118 (188)
233 PLN03108 Rab family protein; P 98.9 2.7E-08 5.9E-13 102.6 13.5 104 18-151 5-124 (210)
234 PF00025 Arf: ADP-ribosylation 98.9 1.2E-08 2.6E-13 102.1 10.5 100 17-151 12-128 (175)
235 cd00882 Ras_like_GTPase Ras-li 98.9 7.3E-09 1.6E-13 98.7 8.6 98 24-151 1-115 (157)
236 PRK12299 obgE GTPase CgtA; Rev 98.8 1.2E-08 2.6E-13 112.2 11.0 102 19-151 158-284 (335)
237 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.8 1.5E-08 3.3E-13 101.1 10.5 100 21-151 4-120 (172)
238 KOG0084 GTPase Rab1/YPT1, smal 98.8 1.5E-08 3.2E-13 99.3 9.9 104 18-151 8-127 (205)
239 cd04128 Spg1 Spg1p. Spg1p (se 98.8 1.3E-08 2.7E-13 102.6 9.9 101 21-151 2-117 (182)
240 cd04111 Rab39 Rab39 subfamily. 98.8 1.4E-08 3.1E-13 104.8 10.4 103 20-151 3-122 (211)
241 COG1084 Predicted GTPase [Gene 98.8 3.1E-08 6.7E-13 104.5 12.6 103 17-151 166-293 (346)
242 cd01881 Obg_like The Obg-like 98.8 8.4E-09 1.8E-13 102.5 8.1 78 24-132 1-85 (176)
243 smart00174 RHO Rho (Ras homolo 98.8 1.4E-08 2.9E-13 101.1 9.5 98 22-151 1-115 (174)
244 cd01874 Cdc42 Cdc42 subfamily. 98.8 1.7E-08 3.7E-13 101.0 10.2 100 20-151 2-118 (175)
245 smart00176 RAN Ran (Ras-relate 98.8 1.1E-08 2.4E-13 104.5 8.9 56 96-151 42-112 (200)
246 TIGR02729 Obg_CgtA Obg family 98.8 3.2E-08 6.9E-13 108.7 12.6 102 19-151 157-286 (329)
247 PRK00454 engB GTP-binding prot 98.8 4.7E-08 1E-12 99.3 12.8 102 17-151 22-148 (196)
248 cd01870 RhoA_like RhoA-like su 98.8 9.7E-09 2.1E-13 102.3 7.5 100 20-151 2-118 (175)
249 KOG1423 Ras-like GTPase ERA [C 98.8 1.7E-08 3.6E-13 104.8 9.2 104 17-151 70-198 (379)
250 PRK12296 obgE GTPase CgtA; Rev 98.8 4.2E-08 9.2E-13 112.0 13.3 83 18-132 158-247 (500)
251 cd04134 Rho3 Rho3 subfamily. 98.8 1.8E-08 3.9E-13 102.2 9.2 100 20-151 1-117 (189)
252 cd01850 CDC_Septin CDC/Septin. 98.8 6E-08 1.3E-12 104.1 13.3 112 20-151 5-156 (276)
253 cd04117 Rab15 Rab15 subfamily. 98.8 3E-08 6.5E-13 97.6 10.1 101 21-151 2-118 (161)
254 cd01871 Rac1_like Rac1-like su 98.8 2.4E-08 5.1E-13 99.9 9.2 99 21-151 3-118 (174)
255 cd04143 Rhes_like Rhes_like su 98.8 4E-08 8.8E-13 103.8 11.4 99 21-151 2-126 (247)
256 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.8 2.9E-08 6.3E-13 103.0 9.7 100 20-151 2-118 (222)
257 cd04130 Wrch_1 Wrch-1 subfamil 98.7 1.5E-08 3.2E-13 101.0 7.1 100 21-151 2-117 (173)
258 cd04131 Rnd Rnd subfamily. Th 98.7 5.9E-08 1.3E-12 97.4 11.0 99 21-151 3-118 (178)
259 cd01892 Miro2 Miro2 subfamily. 98.7 5E-08 1.1E-12 97.0 10.3 105 17-151 2-121 (169)
260 PRK12297 obgE GTPase CgtA; Rev 98.7 9.9E-08 2.1E-12 107.7 13.5 102 19-151 158-287 (424)
261 KOG1191 Mitochondrial GTPase [ 98.7 3.7E-08 7.9E-13 108.6 9.5 87 16-133 265-360 (531)
262 cd04133 Rop_like Rop subfamily 98.7 4.8E-08 1.1E-12 97.8 9.7 100 20-151 2-118 (176)
263 PTZ00132 GTP-binding nuclear p 98.7 8E-08 1.7E-12 99.5 11.6 103 19-151 9-126 (215)
264 cd01875 RhoG RhoG subfamily. 98.7 4.7E-08 1E-12 99.3 9.4 101 20-151 4-120 (191)
265 TIGR00437 feoB ferrous iron tr 98.7 3.2E-08 7E-13 116.8 9.0 94 26-151 1-112 (591)
266 cd04102 RabL3 RabL3 (Rab-like3 98.7 1E-07 2.3E-12 97.4 11.4 88 21-133 2-89 (202)
267 cd01853 Toc34_like Toc34-like 98.7 2.9E-07 6.3E-12 97.1 14.9 110 11-151 23-162 (249)
268 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.7 1.2E-07 2.6E-12 95.5 11.6 101 19-151 5-122 (182)
269 KOG0090 Signal recognition par 98.7 8.6E-08 1.9E-12 95.0 9.3 115 18-171 37-175 (238)
270 cd04148 RGK RGK subfamily. Th 98.7 8.4E-08 1.8E-12 99.8 9.7 100 21-151 2-119 (221)
271 PLN00023 GTP-binding protein; 98.7 1.3E-07 2.8E-12 101.9 11.0 99 18-133 20-118 (334)
272 PF00071 Ras: Ras family; Int 98.6 2.6E-07 5.6E-12 90.6 12.3 101 21-151 1-117 (162)
273 KOG1143 Predicted translation 98.6 5.2E-07 1.1E-11 95.6 14.9 145 20-178 168-333 (591)
274 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.6 1.7E-07 3.7E-12 97.8 11.5 100 20-151 14-130 (232)
275 COG0218 Predicted GTPase [Gene 98.6 2.7E-07 5.8E-12 91.8 11.5 101 17-151 22-148 (200)
276 PRK09866 hypothetical protein; 98.6 2.6E-07 5.6E-12 106.0 12.8 55 97-151 229-302 (741)
277 PF03144 GTP_EFTU_D2: Elongati 98.6 3.8E-08 8.2E-13 83.6 4.6 71 381-456 3-74 (74)
278 cd04104 p47_IIGP_like p47 (47- 98.6 1.2E-07 2.6E-12 96.8 9.0 103 21-151 3-120 (197)
279 COG3596 Predicted GTPase [Gene 98.6 4.8E-07 1E-11 93.6 12.4 147 17-208 37-210 (296)
280 COG4917 EutP Ethanolamine util 98.6 7.4E-08 1.6E-12 87.3 5.7 89 20-151 2-103 (148)
281 COG2262 HflX GTPases [General 98.6 2.2E-07 4.8E-12 101.1 9.8 104 17-151 190-317 (411)
282 KOG0092 GTPase Rab5/YPT51 and 98.5 1.5E-07 3.2E-12 92.0 7.2 103 19-151 5-123 (200)
283 KOG0080 GTPase Rab18, small G 98.5 1.5E-07 3.1E-12 88.7 6.1 104 18-151 10-130 (209)
284 KOG0095 GTPase Rab30, small G 98.5 1E-06 2.2E-11 81.8 11.4 102 18-151 6-125 (213)
285 cd04129 Rho2 Rho2 subfamily. 98.5 3.3E-07 7.2E-12 92.6 8.2 100 20-151 2-118 (187)
286 cd01876 YihA_EngB The YihA (En 98.5 1E-06 2.2E-11 86.2 11.4 97 22-151 2-123 (170)
287 cd01896 DRG The developmentall 98.5 6.8E-07 1.5E-11 93.7 10.4 81 21-133 2-89 (233)
288 KOG0073 GTP-binding ADP-ribosy 98.4 3.4E-06 7.3E-11 80.3 13.0 98 19-151 16-130 (185)
289 PF04670 Gtr1_RagA: Gtr1/RagA 98.4 1.7E-06 3.7E-11 89.8 12.0 101 21-151 1-124 (232)
290 COG1100 GTPase SAR1 and relate 98.4 8.8E-07 1.9E-11 91.6 10.0 102 20-151 6-124 (219)
291 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.4 1.3E-06 2.7E-11 85.6 9.9 105 17-151 20-141 (221)
292 TIGR00991 3a0901s02IAP34 GTP-b 98.4 3.3E-06 7.2E-11 90.6 13.5 114 7-151 22-166 (313)
293 COG1163 DRG Predicted GTPase [ 98.4 6.9E-07 1.5E-11 94.1 7.2 83 19-133 63-152 (365)
294 cd04103 Centaurin_gamma Centau 98.4 1.6E-06 3.5E-11 85.2 9.3 94 21-151 2-112 (158)
295 KOG0078 GTP-binding protein SE 98.3 2.2E-06 4.8E-11 85.4 10.0 105 17-151 10-130 (207)
296 COG0370 FeoB Fe2+ transport sy 98.3 3.1E-06 6.6E-11 97.9 12.4 100 20-151 4-121 (653)
297 KOG0098 GTPase Rab2, small G p 98.3 1.8E-06 3.8E-11 83.8 8.5 102 20-151 7-124 (216)
298 smart00053 DYNc Dynamin, GTPas 98.3 4.4E-06 9.5E-11 87.3 12.0 26 17-42 24-49 (240)
299 cd01873 RhoBTB RhoBTB subfamil 98.3 2.1E-06 4.6E-11 87.5 8.5 55 95-151 63-133 (195)
300 PF00350 Dynamin_N: Dynamin fa 98.3 9E-07 2E-11 87.6 5.1 37 97-133 100-140 (168)
301 KOG1489 Predicted GTP-binding 98.2 5.3E-06 1.2E-10 87.1 10.5 103 18-151 195-325 (366)
302 KOG0086 GTPase Rab4, small G p 98.2 3E-06 6.5E-11 79.2 7.7 102 20-151 10-127 (214)
303 KOG0394 Ras-related GTPase [Ge 98.2 2E-06 4.4E-11 83.3 6.4 105 17-151 7-131 (210)
304 cd01342 Translation_Factor_II_ 98.2 8.6E-06 1.9E-10 69.5 8.9 77 365-453 2-78 (83)
305 TIGR02836 spore_IV_A stage IV 98.2 1.7E-05 3.6E-10 87.1 12.3 35 8-42 6-40 (492)
306 KOG0070 GTP-binding ADP-ribosy 98.1 4.1E-06 8.8E-11 81.8 6.7 99 18-151 16-131 (181)
307 PRK09435 membrane ATPase/prote 98.1 1.4E-05 3.1E-10 87.4 11.3 53 96-151 147-207 (332)
308 PTZ00258 GTP-binding protein; 98.1 8.1E-06 1.8E-10 90.9 9.5 105 12-132 14-126 (390)
309 PF04548 AIG1: AIG1 family; I 98.0 5.4E-05 1.2E-09 78.2 12.8 102 20-151 1-129 (212)
310 cd01900 YchF YchF subfamily. 98.0 1.2E-05 2.6E-10 85.8 7.8 96 22-133 1-104 (274)
311 PF03029 ATP_bind_1: Conserved 98.0 7.4E-06 1.6E-10 85.9 6.1 53 99-151 92-169 (238)
312 KOG0087 GTPase Rab11/YPT3, sma 98.0 2E-05 4.3E-10 78.4 8.4 103 19-151 14-132 (222)
313 KOG0075 GTP-binding ADP-ribosy 98.0 1.1E-05 2.4E-10 75.3 6.0 99 21-157 22-137 (186)
314 PF00735 Septin: Septin; Inte 98.0 3.5E-05 7.6E-10 82.8 10.8 112 20-151 5-155 (281)
315 PRK09601 GTP-binding protein Y 98.0 2.3E-05 5.1E-10 86.3 9.0 98 20-133 3-108 (364)
316 KOG0077 Vesicle coat complex C 97.9 4.3E-05 9.4E-10 73.0 9.3 105 17-160 18-139 (193)
317 KOG0088 GTPase Rab21, small G 97.9 3.1E-06 6.7E-11 79.6 1.5 102 20-151 14-131 (218)
318 PRK13768 GTPase; Provisional 97.9 3.5E-05 7.5E-10 81.9 8.4 54 98-151 97-175 (253)
319 PF03193 DUF258: Protein of un 97.9 7.9E-06 1.7E-10 79.7 2.9 33 9-42 26-58 (161)
320 KOG0395 Ras-related GTPase [Ge 97.9 3E-05 6.5E-10 78.9 7.1 102 19-151 3-121 (196)
321 TIGR00073 hypB hydrogenase acc 97.8 4.3E-05 9.3E-10 78.7 8.2 28 17-44 20-47 (207)
322 TIGR00993 3a0901s04IAP86 chlor 97.8 0.00019 4.1E-09 83.3 13.5 102 19-151 118-249 (763)
323 KOG0079 GTP-binding protein H- 97.8 5.9E-05 1.3E-09 70.4 7.6 100 22-151 11-125 (198)
324 TIGR00750 lao LAO/AO transport 97.8 6.7E-05 1.5E-09 81.8 9.4 53 96-151 125-185 (300)
325 PF05049 IIGP: Interferon-indu 97.8 7.9E-05 1.7E-09 82.3 9.3 106 19-153 35-156 (376)
326 KOG0093 GTPase Rab3, small G p 97.8 0.00013 2.9E-09 68.1 9.2 101 21-151 23-139 (193)
327 KOG0071 GTP-binding ADP-ribosy 97.8 0.00025 5.5E-09 65.8 10.8 97 20-151 18-131 (180)
328 KOG0074 GTP-binding ADP-ribosy 97.8 0.00016 3.4E-09 67.2 9.3 104 14-151 12-132 (185)
329 cd01858 NGP_1 NGP-1. Autoanti 97.7 7.9E-05 1.7E-09 73.1 7.5 28 19-46 102-129 (157)
330 COG0536 Obg Predicted GTPase [ 97.7 0.00024 5.1E-09 76.0 11.2 98 19-151 159-288 (369)
331 PRK09602 translation-associate 97.7 0.00011 2.4E-09 82.7 9.3 37 97-133 71-114 (396)
332 PTZ00099 rab6; Provisional 97.7 0.0001 2.2E-09 73.9 8.0 56 96-151 27-98 (176)
333 cd03698 eRF3_II_like eRF3_II_l 97.7 0.00031 6.7E-09 61.1 9.9 79 363-456 1-82 (83)
334 cd03114 ArgK-like The function 97.7 0.00012 2.7E-09 71.0 8.1 51 96-149 90-148 (148)
335 KOG1954 Endocytosis/signaling 97.7 0.00031 6.6E-09 75.2 11.5 147 19-174 58-241 (532)
336 cd01899 Ygr210 Ygr210 subfamil 97.7 0.00012 2.6E-09 80.0 8.4 37 97-133 68-111 (318)
337 COG5192 BMS1 GTP-binding prote 97.6 0.00017 3.7E-09 80.4 8.7 94 20-151 70-176 (1077)
338 PRK14722 flhF flagellar biosyn 97.6 0.0001 2.2E-09 81.8 7.1 105 19-133 137-257 (374)
339 cd03112 CobW_like The function 97.6 0.00024 5.2E-09 69.8 8.8 54 97-150 86-158 (158)
340 PRK10416 signal recognition pa 97.6 0.0005 1.1E-08 75.3 11.3 124 19-151 114-272 (318)
341 COG5019 CDC3 Septin family pro 97.5 0.00062 1.3E-08 73.7 11.4 113 19-151 23-175 (373)
342 cd04178 Nucleostemin_like Nucl 97.5 0.00017 3.6E-09 71.9 6.7 25 20-44 118-142 (172)
343 COG0012 Predicted GTPase, prob 97.5 0.00079 1.7E-08 73.4 12.1 96 20-133 3-109 (372)
344 cd03693 EF1_alpha_II EF1_alpha 97.5 0.00066 1.4E-08 60.1 9.6 84 361-458 2-88 (91)
345 TIGR00064 ftsY signal recognit 97.5 0.00045 9.8E-09 74.0 10.0 125 18-151 71-230 (272)
346 cd01849 YlqF_related_GTPase Yl 97.5 0.00021 4.6E-09 69.9 6.9 27 18-44 99-125 (155)
347 cd03115 SRP The signal recogni 97.5 0.00048 1E-08 68.6 9.5 56 96-151 81-152 (173)
348 cd01851 GBP Guanylate-binding 97.5 0.0011 2.4E-08 69.0 12.5 91 17-133 5-103 (224)
349 KOG4252 GTP-binding protein [S 97.4 8.1E-05 1.8E-09 71.7 2.9 105 17-151 18-137 (246)
350 KOG1547 Septin CDC10 and relat 97.4 0.002 4.3E-08 65.4 12.8 24 19-42 46-69 (336)
351 TIGR01425 SRP54_euk signal rec 97.4 0.00055 1.2E-08 77.2 9.7 56 96-151 181-252 (429)
352 KOG1532 GTPase XAB1, interacts 97.4 0.00046 1E-08 71.3 8.2 27 17-43 17-43 (366)
353 PRK11889 flhF flagellar biosyn 97.4 0.00037 8E-09 77.0 7.8 129 19-151 241-390 (436)
354 KOG0097 GTPase Rab14, small G 97.4 0.0014 3.1E-08 60.6 10.2 102 19-151 11-129 (215)
355 KOG0076 GTP-binding ADP-ribosy 97.4 0.00042 9.1E-09 66.9 7.0 114 9-151 8-139 (197)
356 PF03308 ArgK: ArgK protein; 97.4 0.00032 6.8E-09 73.0 6.4 154 7-171 17-194 (266)
357 PF00448 SRP54: SRP54-type pro 97.4 0.00024 5.3E-09 72.3 5.5 129 20-151 2-153 (196)
358 cd01855 YqeH YqeH. YqeH is an 97.3 0.00036 7.8E-09 70.7 6.3 25 19-43 127-151 (190)
359 PRK12288 GTPase RsgA; Reviewed 97.3 0.00038 8.2E-09 77.1 6.3 23 21-43 207-229 (347)
360 KOG0448 Mitofusin 1 GTPase, in 97.3 0.003 6.4E-08 73.1 13.3 133 9-151 98-274 (749)
361 KOG3886 GTP-binding protein [S 97.3 0.00056 1.2E-08 69.0 6.5 109 19-161 4-135 (295)
362 cd01857 HSR1_MMR1 HSR1/MMR1. 97.2 0.00042 9E-09 66.7 5.4 22 21-42 85-106 (141)
363 KOG2655 Septin family protein 97.2 0.0016 3.5E-08 71.1 10.3 111 20-151 22-171 (366)
364 PRK12727 flagellar biosynthesi 97.2 0.00094 2E-08 76.6 8.7 24 19-42 350-373 (559)
365 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.0005 1.1E-08 74.5 6.2 24 20-43 162-185 (287)
366 KOG3883 Ras family small GTPas 97.2 0.0016 3.4E-08 61.6 8.4 105 18-151 8-131 (198)
367 PRK14974 cell division protein 97.2 0.0012 2.6E-08 72.7 8.5 55 97-151 222-292 (336)
368 cd01859 MJ1464 MJ1464. This f 97.1 0.001 2.2E-08 65.1 7.1 32 10-41 92-123 (156)
369 KOG0096 GTPase Ran/TC4/GSP1 (n 97.1 0.00095 2E-08 65.5 6.6 103 19-151 10-127 (216)
370 TIGR00157 ribosome small subun 97.1 0.00079 1.7E-08 71.2 6.4 23 20-42 121-143 (245)
371 KOG0081 GTPase Rab27, small G 97.1 0.00057 1.2E-08 64.7 4.5 54 98-151 67-137 (219)
372 TIGR03596 GTPase_YlqF ribosome 97.1 0.0016 3.4E-08 70.2 8.4 24 19-42 118-141 (276)
373 PRK00771 signal recognition pa 97.1 0.0011 2.4E-08 75.4 7.5 54 98-151 176-245 (437)
374 PRK12726 flagellar biosynthesi 97.1 0.0011 2.4E-08 73.2 6.9 25 18-42 205-229 (407)
375 COG0378 HypB Ni2+-binding GTPa 97.1 0.0017 3.8E-08 64.5 7.6 125 19-151 13-155 (202)
376 cd04089 eRF3_II eRF3_II: domai 97.0 0.0053 1.1E-07 53.2 9.8 65 363-443 1-65 (82)
377 PRK09563 rbgA GTPase YlqF; Rev 97.0 0.0014 3E-08 71.0 7.5 25 19-43 121-145 (287)
378 cd01856 YlqF YlqF. Proteins o 97.0 0.0015 3.3E-08 65.0 7.2 24 19-42 115-138 (171)
379 TIGR00101 ureG urease accessor 97.0 0.0022 4.9E-08 65.5 8.6 52 97-151 91-150 (199)
380 PRK12289 GTPase RsgA; Reviewed 97.0 0.001 2.2E-08 73.8 5.9 24 21-44 174-197 (352)
381 TIGR03597 GTPase_YqeH ribosome 97.0 0.0015 3.2E-08 73.1 7.3 25 20-44 155-179 (360)
382 PRK13796 GTPase YqeH; Provisio 97.0 0.0012 2.7E-08 73.8 6.5 38 6-43 147-184 (365)
383 COG1161 Predicted GTPases [Gen 96.9 0.0015 3.3E-08 71.8 6.5 33 20-52 133-165 (322)
384 PRK10867 signal recognition pa 96.9 0.0039 8.5E-08 70.8 9.8 56 96-151 182-253 (433)
385 COG0523 Putative GTPases (G3E 96.9 0.0044 9.5E-08 67.8 9.8 148 20-176 2-176 (323)
386 KOG1490 GTP-binding protein CR 96.9 0.0018 3.9E-08 72.2 6.4 103 17-151 166-294 (620)
387 KOG1486 GTP-binding protein DR 96.8 0.0015 3.4E-08 66.6 5.4 82 20-133 63-151 (364)
388 KOG0072 GTP-binding ADP-ribosy 96.8 0.0013 2.8E-08 61.6 4.4 108 8-151 8-132 (182)
389 cd03110 Fer4_NifH_child This p 96.8 0.012 2.6E-07 58.9 11.8 54 96-151 91-156 (179)
390 PRK14721 flhF flagellar biosyn 96.8 0.0012 2.7E-08 74.5 4.8 24 19-42 191-214 (420)
391 TIGR00959 ffh signal recogniti 96.8 0.0035 7.6E-08 71.2 8.5 56 96-151 181-252 (428)
392 PRK10463 hydrogenase nickel in 96.8 0.0064 1.4E-07 65.2 9.9 26 17-42 102-127 (290)
393 KOG0410 Predicted GTP binding 96.7 0.0029 6.3E-08 67.1 6.7 84 19-133 178-269 (410)
394 COG1162 Predicted GTPases [Gen 96.7 0.0014 3.1E-08 69.9 4.3 22 20-41 165-186 (301)
395 KOG1707 Predicted Ras related/ 96.7 0.0057 1.2E-07 69.7 8.8 101 17-152 8-129 (625)
396 KOG0083 GTPase Rab26/Rab37, sm 96.6 0.00055 1.2E-08 62.8 0.1 57 95-151 44-116 (192)
397 PRK12724 flagellar biosynthesi 96.6 0.0025 5.4E-08 71.5 4.9 23 20-42 224-246 (432)
398 PRK05703 flhF flagellar biosyn 96.5 0.01 2.2E-07 67.8 9.9 55 97-151 299-370 (424)
399 KOG1491 Predicted GTP-binding 96.5 0.027 5.8E-07 60.5 12.0 106 11-133 12-126 (391)
400 PRK06731 flhF flagellar biosyn 96.5 0.0073 1.6E-07 64.5 7.9 127 20-151 76-224 (270)
401 TIGR00092 GTP-binding protein 96.5 0.0059 1.3E-07 67.6 7.2 98 20-133 3-109 (368)
402 cd02038 FleN-like FleN is a me 96.5 0.018 3.9E-07 55.2 9.8 67 98-171 45-125 (139)
403 PRK00098 GTPase RsgA; Reviewed 96.5 0.0032 7E-08 68.5 5.1 23 20-42 165-187 (298)
404 COG1703 ArgK Putative periplas 96.5 0.0094 2E-07 63.1 8.1 36 7-42 39-74 (323)
405 KOG0393 Ras-related small GTPa 96.4 0.0022 4.8E-08 64.4 3.1 103 19-151 4-122 (198)
406 PF02492 cobW: CobW/HypB/UreG, 96.4 0.0033 7.2E-08 63.0 4.4 73 97-175 84-172 (178)
407 KOG1534 Putative transcription 96.4 0.005 1.1E-07 61.5 5.3 26 22-47 6-31 (273)
408 PRK08099 bifunctional DNA-bind 96.4 0.0092 2E-07 67.5 8.1 30 17-46 217-246 (399)
409 cd03697 EFTU_II EFTU_II: Elong 96.4 0.017 3.6E-07 50.6 8.1 57 375-443 12-68 (87)
410 PRK06995 flhF flagellar biosyn 96.3 0.0072 1.6E-07 69.4 7.0 24 19-42 256-279 (484)
411 cd03694 GTPBP_II Domain II of 96.3 0.027 5.9E-07 49.3 9.1 59 375-443 12-70 (87)
412 PRK11537 putative GTP-binding 96.2 0.036 7.8E-07 60.8 11.3 144 18-174 3-177 (318)
413 cd02036 MinD Bacterial cell di 96.1 0.04 8.7E-07 54.7 10.3 51 99-151 64-127 (179)
414 TIGR00257 IMPACT_YIGZ uncharac 96.1 0.047 1E-06 55.6 10.7 112 667-784 89-200 (204)
415 KOG1487 GTP-binding protein DR 96.0 0.0068 1.5E-07 62.4 4.1 82 20-133 60-148 (358)
416 KOG2486 Predicted GTPase [Gene 96.0 0.017 3.8E-07 60.3 7.1 101 19-151 136-261 (320)
417 PRK12723 flagellar biosynthesi 96.0 0.028 6.1E-07 63.2 9.3 129 19-151 174-325 (388)
418 COG1419 FlhF Flagellar GTP-bin 95.9 0.007 1.5E-07 67.1 4.1 124 18-151 202-351 (407)
419 PRK11568 hypothetical protein; 95.9 0.068 1.5E-06 54.4 10.7 112 667-784 89-200 (204)
420 cd03695 CysN_NodQ_II CysN_NodQ 95.9 0.069 1.5E-06 46.1 9.3 50 381-443 17-66 (81)
421 PRK13849 putative crown gall t 95.8 0.037 8E-07 57.9 8.9 36 96-133 82-117 (231)
422 cd03696 selB_II selB_II: this 95.8 0.053 1.1E-06 47.0 8.3 55 375-443 12-66 (83)
423 PRK14723 flhF flagellar biosyn 95.7 0.024 5.2E-07 68.3 7.9 23 20-42 186-208 (767)
424 TIGR02475 CobW cobalamin biosy 95.7 0.047 1E-06 60.5 9.6 25 18-42 3-27 (341)
425 cd02042 ParA ParA and ParB of 95.6 0.043 9.3E-07 49.4 7.3 70 22-133 2-73 (104)
426 KOG1673 Ras GTPases [General f 95.5 0.03 6.5E-07 53.3 6.1 102 20-151 21-137 (205)
427 cd03111 CpaE_like This protein 95.4 0.098 2.1E-06 47.6 9.2 33 99-133 44-76 (106)
428 KOG2485 Conserved ATP/GTP bind 95.3 0.038 8.3E-07 58.8 6.6 78 17-121 141-220 (335)
429 KOG0091 GTPase Rab39, small G 95.2 0.052 1.1E-06 52.1 6.5 78 22-133 11-93 (213)
430 cd03692 mtIF2_IVc mtIF2_IVc: t 95.1 0.14 3E-06 44.6 8.7 64 366-443 6-69 (84)
431 KOG2743 Cobalamin synthesis pr 95.1 0.14 3.1E-06 54.1 9.9 148 17-178 55-244 (391)
432 COG3640 CooC CO dehydrogenase 95.0 0.051 1.1E-06 55.7 6.4 55 94-151 130-198 (255)
433 PRK01889 GTPase RsgA; Reviewed 95.0 0.032 6.9E-07 62.3 5.5 26 19-44 195-220 (356)
434 cd03688 eIF2_gamma_II eIF2_gam 95.0 0.13 2.9E-06 46.6 8.2 88 361-453 3-102 (113)
435 TIGR03348 VI_IcmF type VI secr 95.0 0.052 1.1E-06 70.0 7.9 20 20-39 112-131 (1169)
436 KOG1424 Predicted GTP-binding 94.8 0.023 4.9E-07 64.1 3.4 26 19-44 314-339 (562)
437 cd02037 MRP-like MRP (Multiple 94.7 0.13 2.9E-06 50.8 8.6 54 96-151 66-134 (169)
438 COG0541 Ffh Signal recognition 94.7 0.091 2E-06 58.6 7.9 143 6-150 79-251 (451)
439 cd03702 IF2_mtIF2_II This fami 94.7 0.15 3.2E-06 45.4 7.8 71 367-453 4-74 (95)
440 KOG0447 Dynamin-like GTP bindi 94.2 0.4 8.7E-06 54.3 11.4 135 17-171 306-507 (980)
441 PF13555 AAA_29: P-loop contai 94.1 0.053 1.2E-06 44.1 3.3 22 21-42 25-46 (62)
442 cd00066 G-alpha G protein alph 94.1 0.088 1.9E-06 57.9 6.2 56 96-151 159-241 (317)
443 KOG2423 Nucleolar GTPase [Gene 94.0 0.045 9.7E-07 59.6 3.6 25 18-42 306-330 (572)
444 cd01858 NGP_1 NGP-1. Autoanti 93.9 0.042 9E-07 53.7 2.9 38 114-151 1-52 (157)
445 cd01857 HSR1_MMR1 HSR1/MMR1. 93.9 0.07 1.5E-06 51.2 4.4 39 113-151 3-55 (141)
446 cd01856 YlqF YlqF. Proteins o 93.8 0.057 1.2E-06 53.6 3.7 46 106-151 3-59 (171)
447 smart00275 G_alpha G protein a 93.7 0.13 2.9E-06 57.1 6.7 55 97-151 183-264 (342)
448 TIGR03596 GTPase_YlqF ribosome 93.5 0.065 1.4E-06 57.7 3.9 46 106-151 5-61 (276)
449 KOG1533 Predicted GTPase [Gene 93.5 0.067 1.5E-06 54.7 3.5 56 96-151 95-176 (290)
450 KOG4181 Uncharacterized conser 93.4 0.75 1.6E-05 49.7 11.2 34 7-40 176-209 (491)
451 COG3523 IcmF Type VI protein s 93.0 0.2 4.3E-06 63.1 7.3 54 98-151 174-269 (1188)
452 PHA00729 NTP-binding motif con 92.9 0.14 3.1E-06 52.9 5.0 42 1-44 1-42 (226)
453 PRK09270 nucleoside triphospha 92.8 0.15 3.1E-06 53.4 5.1 36 7-42 21-56 (229)
454 KOG2484 GTPase [General functi 92.8 0.15 3.3E-06 56.0 5.3 40 5-44 232-277 (435)
455 COG0552 FtsY Signal recognitio 92.7 0.17 3.7E-06 54.8 5.4 125 19-149 139-295 (340)
456 PF13207 AAA_17: AAA domain; P 92.6 0.12 2.7E-06 47.7 3.8 24 21-44 1-24 (121)
457 cd01130 VirB11-like_ATPase Typ 92.4 0.14 2.9E-06 51.7 4.1 25 18-42 24-48 (186)
458 COG0563 Adk Adenylate kinase a 92.4 0.12 2.6E-06 51.7 3.7 27 21-47 2-28 (178)
459 PF03205 MobB: Molybdopterin g 92.3 0.14 2.9E-06 49.3 3.7 22 21-42 2-23 (140)
460 COG1116 TauB ABC-type nitrate/ 92.2 0.17 3.8E-06 52.6 4.6 19 21-39 31-49 (248)
461 cd01855 YqeH YqeH. YqeH is an 92.2 0.12 2.6E-06 52.2 3.4 46 106-151 19-74 (190)
462 PF05621 TniB: Bacterial TniB 92.1 0.75 1.6E-05 49.5 9.4 38 6-43 46-85 (302)
463 PRK08118 topology modulation p 91.8 0.16 3.4E-06 50.4 3.6 25 20-44 2-26 (167)
464 cd03238 ABC_UvrA The excision 91.8 0.15 3.2E-06 51.0 3.4 23 20-42 22-44 (176)
465 PRK05480 uridine/cytidine kina 91.6 0.17 3.6E-06 52.0 3.8 25 18-42 5-29 (209)
466 PF09186 DUF1949: Domain of un 91.6 0.32 7E-06 38.3 4.6 56 722-780 1-56 (56)
467 PF06431 Polyoma_lg_T_C: Polyo 91.6 0.25 5.3E-06 54.0 5.0 38 7-44 143-180 (417)
468 cd03701 IF2_IF5B_II IF2_IF5B_I 91.5 1 2.2E-05 40.1 8.2 71 367-453 4-74 (95)
469 cd02019 NK Nucleoside/nucleoti 91.5 0.16 3.4E-06 42.3 2.8 22 21-42 1-22 (69)
470 cd01983 Fer4_NifH The Fer4_Nif 91.5 0.65 1.4E-05 40.3 7.0 68 22-133 2-70 (99)
471 PRK07261 topology modulation p 91.4 0.19 4E-06 50.1 3.7 23 21-43 2-24 (171)
472 COG1134 TagH ABC-type polysacc 91.3 0.22 4.7E-06 51.7 4.1 28 21-52 55-82 (249)
473 COG1136 SalX ABC-type antimicr 91.2 0.2 4.4E-06 51.8 3.8 19 21-39 33-51 (226)
474 TIGR00235 udk uridine kinase. 91.2 0.21 4.6E-06 51.2 4.0 26 17-42 4-29 (207)
475 KOG3887 Predicted small GTPase 91.1 0.42 9E-06 49.1 5.8 105 21-156 29-153 (347)
476 PRK10751 molybdopterin-guanine 91.1 0.22 4.7E-06 49.6 3.8 25 18-42 5-29 (173)
477 PF13671 AAA_33: AAA domain; P 91.1 0.21 4.6E-06 47.5 3.7 23 22-44 2-24 (143)
478 COG0572 Udk Uridine kinase [Nu 91.1 0.24 5.2E-06 50.8 4.1 32 13-44 2-33 (218)
479 PRK07667 uridine kinase; Provi 91.0 0.31 6.6E-06 49.5 4.9 37 6-42 3-40 (193)
480 PRK09563 rbgA GTPase YlqF; Rev 90.9 0.18 3.9E-06 54.6 3.3 46 106-151 8-64 (287)
481 PRK13900 type IV secretion sys 90.9 0.18 4E-06 55.6 3.3 25 18-42 159-183 (332)
482 COG3839 MalK ABC-type sugar tr 90.8 0.26 5.7E-06 54.1 4.4 44 21-68 31-79 (338)
483 PRK05800 cobU adenosylcobinami 90.8 1.2 2.6E-05 44.3 8.8 24 21-44 3-26 (170)
484 cd03703 aeIF5B_II aeIF5B_II: T 90.6 1.2 2.6E-05 40.6 7.7 67 374-448 11-86 (110)
485 PF07015 VirC1: VirC1 protein; 90.6 1.3 2.9E-05 45.8 9.0 52 96-149 82-151 (231)
486 cd01859 MJ1464 MJ1464. This f 90.5 0.3 6.4E-06 47.5 4.2 38 114-151 5-54 (156)
487 TIGR01360 aden_kin_iso1 adenyl 90.5 0.27 5.8E-06 49.2 4.0 29 18-46 2-30 (188)
488 PF13191 AAA_16: AAA ATPase do 90.4 0.31 6.7E-06 48.4 4.3 36 7-42 10-47 (185)
489 PF06858 NOG1: Nucleolar GTP-b 90.4 0.44 9.5E-06 38.0 4.1 36 114-149 5-58 (58)
490 CHL00072 chlL photochlorophyll 90.3 1.3 2.8E-05 48.1 9.3 36 97-133 115-150 (290)
491 PF00485 PRK: Phosphoribulokin 90.3 0.21 4.6E-06 50.7 3.0 23 21-43 1-23 (194)
492 PRK13833 conjugal transfer pro 90.3 0.28 6E-06 53.9 4.0 33 7-42 135-167 (323)
493 KOG3905 Dynein light intermedi 90.3 2 4.3E-05 46.2 10.0 22 19-40 52-73 (473)
494 cd03116 MobB Molybdenum is an 90.2 0.28 6E-06 48.2 3.5 23 20-42 2-24 (159)
495 KOG0780 Signal recognition par 90.1 0.69 1.5E-05 50.8 6.7 127 20-151 102-253 (483)
496 cd02025 PanK Pantothenate kina 90.1 0.23 5.1E-06 51.5 3.1 21 22-42 2-22 (220)
497 COG1763 MobB Molybdopterin-gua 90.0 0.27 5.8E-06 48.3 3.3 23 20-42 3-25 (161)
498 smart00382 AAA ATPases associa 90.0 0.26 5.7E-06 45.6 3.2 25 20-44 3-27 (148)
499 PF13238 AAA_18: AAA domain; P 89.9 0.25 5.5E-06 45.8 3.0 22 22-43 1-22 (129)
500 COG4962 CpaF Flp pilus assembl 89.9 0.27 5.9E-06 53.5 3.5 22 20-41 174-195 (355)
No 1
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-177 Score=1393.57 Aligned_cols=828 Identities=66% Similarity=1.090 Sum_probs=805.7
Q ss_pred CccccHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEe
Q 003316 1 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80 (831)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~ 80 (831)
|+.|..++++++|.+..+|||+.+++|+|||||||+++|...+|+|....+|.+|++|++.+||+|||||+++.+++.++
T Consensus 1 Mv~Ftvd~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e 80 (842)
T KOG0469|consen 1 MVAFTVDQVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFE 80 (842)
T ss_pred CccccHHHHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhh
Confidence 78999999999999999999999999999999999999999999999888999999999999999999999999999998
Q ss_pred echhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecC
Q 003316 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKM 148 (831)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKi 148 (831)
..+..++.+....++++..|||||.|||+||++||.+|||+.|||++|||+++ ++.++.+|++|+|||
T Consensus 81 ~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~ 160 (842)
T KOG0469|consen 81 MSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKM 160 (842)
T ss_pred hhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehh
Confidence 77766776777778889999999999999999999999999999999999998 778999999999999
Q ss_pred cchhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHH
Q 003316 149 DRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 228 (831)
Q Consensus 149 D~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 228 (831)
||.++|+..+.++.|+.|+++++.+|.+++.|.+.+.++..+.|.+|+|.|+|+++||+|++.|||++|.++|+++..+|
T Consensus 161 DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~km 240 (842)
T KOG0469|consen 161 DRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKM 240 (842)
T ss_pred hHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCcCCCceeecC--CCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHH
Q 003316 229 MERLWGENFFDPATRKWTSRN--TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALM 306 (831)
Q Consensus 229 ~~~lw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~ 306 (831)
..+|||+.|+++++++|..+. +.++.+++.|+.|+|+|||++++++.+...+.+..+|+.+++.+..++....+++|+
T Consensus 241 m~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~Ll 320 (842)
T KOG0469|consen 241 MNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALL 320 (842)
T ss_pred HHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHH
Confidence 999999999999999998876 556678899999999999999999999999999999999999999999988899999
Q ss_pred HHHHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEE
Q 003316 307 KRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 386 (831)
Q Consensus 307 ~~i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV 386 (831)
+.+|++|+|....||++|.-+||||..+|.+|...+|.||.+++.+.+++.|||++|+++||+|+.++.++|+|++|+||
T Consensus 321 K~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRV 400 (842)
T KOG0469|consen 321 KVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRV 400 (842)
T ss_pred HHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccceeeecCCCCCcccc
Q 003316 387 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPI 466 (831)
Q Consensus 387 ~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tgTl~~~~~~~~~~~ 466 (831)
|||++.+|+.+++.|+||.+|++++.+...|.+..+|||+..++|+.++||||+++.|++++..+|||+++.+. ++.+
T Consensus 401 FsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~--AHNm 478 (842)
T KOG0469|consen 401 FSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEA--AHNM 478 (842)
T ss_pred ecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhh--hccc
Confidence 99999999999999999999999888888899999999999999999999999999999999999999999887 8899
Q ss_pred ccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEc
Q 003316 467 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 546 (831)
Q Consensus 467 ~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~ 546 (831)
+.+.|+.+||+.+++|++|+.|++||.++|++|+++||.+.+..+|+||++|.|.||||||||+.+|+++| |+|+++.+
T Consensus 479 rvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeedh-A~iPlk~s 557 (842)
T KOG0469|consen 479 RVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDH-ACIPLKKS 557 (842)
T ss_pred eEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhcc-cCCceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred CceEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEec
Q 003316 547 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFG 626 (831)
Q Consensus 547 ~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 626 (831)
+|.|+||||+.++++..+.++++|+|||+||+++||++++.+.|++|.++++|++|.|+..|.+.|+||..++++|||||
T Consensus 558 dPvVsYrEtvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfg 637 (842)
T KOG0469|consen 558 DPVVSYRETVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFG 637 (842)
T ss_pred CCeeeeecccccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHH
Q 003316 627 PETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 706 (831)
Q Consensus 627 p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al 706 (831)
|+.+|+|+++|.++|.+|++++++++..|||||.++|||+||.|++|+|.|.|..+|.|..|++++|+++++|++|++++
T Consensus 638 Pd~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~ 717 (842)
T KOG0469|consen 638 PDGTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASV 717 (842)
T ss_pred CCCCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEE
Q 003316 707 LTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCV 786 (831)
Q Consensus 707 ~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 786 (831)
..|+|+|+||+|.|||+||+.++|.||++|+++||++.+++...|++++.|+|++|+.|||||..+|||-|.|+|.++|.
T Consensus 718 l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~v 797 (842)
T KOG0469|consen 718 LTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMV 797 (842)
T ss_pred HhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCChhHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003316 787 FDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 831 (831)
Q Consensus 787 f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~~ 831 (831)
|+||+++|+||+|++|..-+++..+||||||.|.+|.+.+|+|||
T Consensus 798 FdHws~lpgdp~dp~sk~~~iV~~~RKrkglke~~P~~~~y~Dkl 842 (842)
T KOG0469|consen 798 FDHWSILPGDPLDPTSKPGQIVLATRKRKGLKEGVPDLDEYLDKL 842 (842)
T ss_pred eeccccCCCCCCCCCccchHHHHHHHHhcCCCCCCCChHHHhhcC
Confidence 999999999999999999999999999999999999999999997
No 2
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=1.7e-155 Score=1406.51 Aligned_cols=828 Identities=94% Similarity=1.439 Sum_probs=750.7
Q ss_pred CccccHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEe
Q 003316 1 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80 (831)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~ 80 (831)
|.+++.++|.++|+++++||||||+||+|||||||+++|++.+|.|.+...|.++++|++++|++||+|++++.+++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (843)
T PLN00116 1 MVKFTAEELRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (843)
T ss_pred CCccCHHHHHHHhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEee
Confidence 77899999999999999999999999999999999999999999999887888889999999999999999999999996
Q ss_pred echhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecC
Q 003316 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKM 148 (831)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKi 148 (831)
..+..+.+.....+++++.|||||||||.||..++.+|++.+|+||+||||.+ +..++.|+++|+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~ 160 (843)
T PLN00116 81 MTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
T ss_pred cccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECC
Confidence 43322222222234457899999999999999999999999999999999998 445567778899999
Q ss_pred cchhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHH
Q 003316 149 DRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 228 (831)
Q Consensus 149 D~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 228 (831)
|+++.|++.+++++|..|+++++++|.++..+..+..+.++|+|.++||.|+|+.+||+|++++|+.+|..+|+++.+.+
T Consensus 161 D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l 240 (843)
T PLN00116 161 DRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (843)
T ss_pred cccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHH
Confidence 99999999999999999999999999988877655455678999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHH
Q 003316 229 MERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKR 308 (831)
Q Consensus 229 ~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~ 308 (831)
.+++||++||+++++++...+.+.....+.|.+++++|+|+|++.+++.|+++|++||++++++++.+|+....+++++.
T Consensus 241 ~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~ 320 (843)
T PLN00116 241 MERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKR 320 (843)
T ss_pred HHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHH
Confidence 99999999998877777665422333467899999999999999999999999999999988899999998788999999
Q ss_pred HHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEe
Q 003316 309 VMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFS 388 (831)
Q Consensus 309 i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~s 388 (831)
++..|+|..+.|||+|++|+|||.+++..++..++.++.+++...+++.||+++|++|+|||+.++++.|++++|+||||
T Consensus 321 ~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVys 400 (843)
T PLN00116 321 VMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFS 400 (843)
T ss_pred HHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEe
Confidence 99999999999999999999999998888887777654334444577899999999999999998888887799999999
Q ss_pred eEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccceeeecCC--CCCcccc
Q 003316 389 GKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEK--EVDAHPI 466 (831)
Q Consensus 389 GtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tgTl~~~~--~~~~~~~ 466 (831)
|+|++||.|+++++|++++.+++...++|++||.++|++.++|++|+|||||+|.|++++.++++||++.. . +.++
T Consensus 401 GtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~--~~~l 478 (843)
T PLN00116 401 GTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVD--AHPI 478 (843)
T ss_pred eeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccC--Cccc
Confidence 99999999999999887765544555799999999999999999999999999999998644444998876 4 5667
Q ss_pred ccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCCcEEEEecchHHHHHHHHHHHhhcCC-CceEEE
Q 003316 467 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMG-GAEIIK 545 (831)
Q Consensus 467 ~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~-~v~v~~ 545 (831)
+++.++.+||++++|||.+++|+++|.+||++|.+|||||++..++|||++|+||||+|||+|++||+++| + +|++++
T Consensus 479 ~~~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f-~~~vev~~ 557 (843)
T PLN00116 479 KAMKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDF-MGGAEIKV 557 (843)
T ss_pred cccccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHh-hCCCcEEE
Confidence 78887669999999999999999999999999999999999977799999999999999999999999999 7 899999
Q ss_pred cCceEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEe
Q 003316 546 SDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCF 625 (831)
Q Consensus 546 ~~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 625 (831)
|+|+|+|||||.++++..+..+.+++|++++++++|++.++.+.++.+.+...++.+.+...+...|+|+...++++|+|
T Consensus 558 s~p~V~yrETI~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 637 (843)
T PLN00116 558 SDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCF 637 (843)
T ss_pred cCCeEEEEecccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeee
Confidence 99999999999998765555567889999999999999998899998877666666666666777899999999999999
Q ss_pred ccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHH
Q 003316 626 GPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYAS 705 (831)
Q Consensus 626 ~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a 705 (831)
||+..|+|.|++++.|.+|+++++++|++||++|+++|||||+||+||+|+|+|+++|.|+.++.+++|++|+++||++|
T Consensus 638 gp~~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~A 717 (843)
T PLN00116 638 GPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYAS 717 (843)
T ss_pred cCCCCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHH
Confidence 99887889999999999999999999999999999999999999999999999999999888888889999999999999
Q ss_pred HHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEE
Q 003316 706 QLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 785 (831)
Q Consensus 706 l~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 785 (831)
|++|+|+||||||+|||+||++++|+|++||++|||+|++++..++++.++|+|++|++|||||+++|||+|+|+|+|+|
T Consensus 718 l~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~ 797 (843)
T PLN00116 718 QLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (843)
T ss_pred HHhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEE
Confidence 99999999999999999999999999999999999999999987776779999999999999999999999999999999
Q ss_pred EecceeecCCCCCCCChhHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003316 786 VFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 831 (831)
Q Consensus 786 ~f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~~ 831 (831)
+|+||++||+||||++|+|++||+++|+||||+|++|.+.+|+|||
T Consensus 798 ~f~~y~~v~~dp~~~~~~a~~~~~~~R~rKGl~~~~~~~~~~~d~~ 843 (843)
T PLN00116 798 VFDHWDMMSSDPLEAGSQAAQLVADIRKRKGLKEQMPPLSEYEDKL 843 (843)
T ss_pred EeceeEECCCCCCCchhHHHHHHHHHHhhCCCCCCCCCHHHhcccC
Confidence 9999999999999999999999999999999999999999999997
No 3
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=5.2e-154 Score=1390.50 Aligned_cols=822 Identities=69% Similarity=1.129 Sum_probs=741.8
Q ss_pred CccccHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEe
Q 003316 1 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80 (831)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~ 80 (831)
|..++.++|.++|++++++|||||+||+|||||||+++|++.+|.+++...|.++++|++++|++|||||.++.+++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (836)
T PTZ00416 1 MVNFTVDQIREIMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYE 80 (836)
T ss_pred CCccCHHHHHHHhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEee
Confidence 67899999999999999999999999999999999999999999998888888888999999999999999999999996
Q ss_pred echhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecC
Q 003316 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKM 148 (831)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKi 148 (831)
... ....+++++.|||||||||.||..++.+|++.+|+||+|||+.+ +...+.|.++|+|||
T Consensus 81 ~~~------~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~ 154 (836)
T PTZ00416 81 HDL------EDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKV 154 (836)
T ss_pred ccc------ccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEECh
Confidence 311 01123347899999999999999999999999999999999998 333456667899999
Q ss_pred cchhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHH
Q 003316 149 DRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 228 (831)
Q Consensus 149 D~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 228 (831)
|+++.|++.+++++|..++++++++|..+..+..+......|+|..+||||+|+.+||+|++++|+..|+++|+++...+
T Consensus 155 D~~~~~~~~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l 234 (836)
T PTZ00416 155 DRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKM 234 (836)
T ss_pred hhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHH
Confidence 99999999999999999999999999998766543322356899999999999999999999999999999999999999
Q ss_pred HHHhhcccccCcCCCceeecC--CCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHH
Q 003316 229 MERLWGENFFDPATRKWTSRN--TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALM 306 (831)
Q Consensus 229 ~~~lw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~ 306 (831)
.+++||++||+++++++...+ ......++.|++++++|+|+|++++++.|+++|++||+.+++++++++++...+.++
T Consensus 235 ~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~ 314 (836)
T PTZ00416 235 MERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLL 314 (836)
T ss_pred HHHHhccccccCCCCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHH
Confidence 999999999988777666554 222235688999999999999999999999999999998889999999755556899
Q ss_pred HHHHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEE
Q 003316 307 KRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 386 (831)
Q Consensus 307 ~~i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV 386 (831)
++++++|+|++++|||+|++|+|||.+++..+...++.++.++.....++.||+++|++|+|||+.++++.|++++|+||
T Consensus 315 ~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV 394 (836)
T PTZ00416 315 KAVMQKWLPAADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRV 394 (836)
T ss_pred HHHHHHHhchHHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEE
Confidence 99999999999999999999999999887776666655433333334678999999999999999999988887899999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccceeeecCCCCCcccc
Q 003316 387 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPI 466 (831)
Q Consensus 387 ~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tgTl~~~~~~~~~~~ 466 (831)
|||+|++||.|+++++|++.++++++...+|++||.++|++..+|++|+|||||+|.||++++++||||++... +.++
T Consensus 395 ~SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tgTL~~~~~--~~~l 472 (836)
T PTZ00416 395 FSGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSGTITTSET--AHNI 472 (836)
T ss_pred EeeeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecceeecCCCC--cccc
Confidence 99999999999999998876655433334699999999999999999999999999999986668999988766 6777
Q ss_pred ccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEc
Q 003316 467 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 546 (831)
Q Consensus 467 ~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~ 546 (831)
.++.++++|+++++|||.+++|+++|.+||++|.+|||+|.++.++|||++|+||||+|||+|++||+++| ++|++++|
T Consensus 473 ~~i~~~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f-~~vev~~s 551 (836)
T PTZ00416 473 RDMKYSVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDY-ANIDIIVS 551 (836)
T ss_pred cccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHh-cCcceEec
Confidence 88887669999999999999999999999999999999999977799999999999999999999999999 78999999
Q ss_pred CceEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEec
Q 003316 547 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFG 626 (831)
Q Consensus 547 ~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 626 (831)
+|+|+|||||.+.++..+..+.++++++++++++||+.++.+.++.+.+......+.+...+...|+|+...++++|+|+
T Consensus 552 ~P~V~yrETI~~~s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~ 631 (836)
T PTZ00416 552 DPVVSYRETVTEESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFG 631 (836)
T ss_pred CCEEEEEEEecccccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeecc
Confidence 99999999999998877777888999999999999999988888888766555555555566678999999999999999
Q ss_pred cCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHH
Q 003316 627 PETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 706 (831)
Q Consensus 627 p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al 706 (831)
|...|+|+++|.+.+.+|+++++++|++||++|+++|||||+||+||+|+|+|+++|.|+.++..++|++|+++||++|+
T Consensus 632 ~~~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~ 711 (836)
T PTZ00416 632 PENKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACE 711 (836)
T ss_pred CCCCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHH
Confidence 99889999999998999999999999999999999999999999999999999999987777788899999999999999
Q ss_pred HhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEE
Q 003316 707 LTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCV 786 (831)
Q Consensus 707 ~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 786 (831)
++|+|+||||||+|||+||++++|+|++||++|||+|+++++.+++..++|+|++|++|||||+++||++|+|+|+|+|+
T Consensus 712 ~~a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~ 791 (836)
T PTZ00416 712 LTASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCV 791 (836)
T ss_pred hhCCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEE
Confidence 99999999999999999999999999999999999999999877766799999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCChhHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003316 787 FDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 831 (831)
Q Consensus 787 f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~~ 831 (831)
|+||++||+||||++|+|++||+++||||||++++|.+.+|+|||
T Consensus 792 F~~y~~vp~dp~~~~~~a~~~~~~~R~rKGl~~~~~~~~~~~~~~ 836 (836)
T PTZ00416 792 FDHWQVVPGDPLEPGSKANEIVLSIRKRKGLKPEIPDLDNYLDKL 836 (836)
T ss_pred eccEEECCCCCCCchhHHHHHHHHHHHhCCCCCCCCCHHHhcccC
Confidence 999999999999999999999999999999999999999999997
No 4
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-141 Score=1150.41 Aligned_cols=812 Identities=40% Similarity=0.715 Sum_probs=751.1
Q ss_pred cccHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc-cCCceEEecCchhhheeceeeeeceeEEEEee
Q 003316 3 KFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRQDEAERGITIKSTGISLYYEM 81 (831)
Q Consensus 3 ~~~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~-~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~ 81 (831)
.|+.++|..||+++..+|||+++||.+||||+|.+.|..+++.--+. .....+++|....|++||+||++..+++...+
T Consensus 112 ~y~~~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D 191 (971)
T KOG0468|consen 112 VYDLEYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSD 191 (971)
T ss_pred hhhHHHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEec
Confidence 47899999999999999999999999999999999999888732211 11135899999999999999999999998753
Q ss_pred chhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCc
Q 003316 82 TDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMD 149 (831)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD 149 (831)
.+++++.+|++|||||+||+.|+.++++.+||+|+|||+.+ +.+++.+.++||||+|
T Consensus 192 -----------~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiD 260 (971)
T KOG0468|consen 192 -----------SKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVD 260 (971)
T ss_pred -----------CcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhH
Confidence 35578999999999999999999999999999999999998 4556677788999999
Q ss_pred chhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcC-CChHHH
Q 003316 150 RCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG-VDESKM 228 (831)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~-i~~~~l 228 (831)
|++.|++..|.++|.+|+.+++++|..+.++..+. ..-++|+.|||+|+|+..||||++.+||.+|++.++ ++.+..
T Consensus 261 RLilELkLPP~DAY~KLrHii~~iN~~is~~s~~~--~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~F 338 (971)
T KOG0468|consen 261 RLILELKLPPMDAYYKLRHIIDEINNLISTFSKDD--NPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDF 338 (971)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHhcchhhhccccc--ccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhh
Confidence 99999999999999999999999999988765432 234899999999999999999999999999998887 889999
Q ss_pred HHHhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHH
Q 003316 229 MERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKR 308 (831)
Q Consensus 229 ~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~ 308 (831)
..++||+.||+.+|.+|..++.++. ..+.|++|+|+|+|+++..+....++.+...|.++++.++.++++.+.+.|++-
T Consensus 339 a~RLWGdvYf~~ktrkF~kk~~~~~-~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~l 417 (971)
T KOG0468|consen 339 AKRLWGDVYFHSKTRKFVKKPPDGS-GSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRL 417 (971)
T ss_pred hhhhhccccccccccccccCCCCCc-ccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHH
Confidence 9999999999999999988774443 356999999999999999999888888999999999999999999999999999
Q ss_pred HHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEe
Q 003316 309 VMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFS 388 (831)
Q Consensus 309 i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~s 388 (831)
+.++|+.....+.|++++++|||.+....++...|.|+.+......+..|++++|++.++.|+++..+.-.|.+|+||||
T Consensus 418 vc~~ffg~~sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~S 497 (971)
T KOG0468|consen 418 VCKSFFGIESGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYS 497 (971)
T ss_pred HHHHhccchhhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeee
Confidence 99999999999999999999999998888888888887776667788999999999999999999887778899999999
Q ss_pred eEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccceeeecCCCC-Cccccc
Q 003316 389 GKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEV-DAHPIR 467 (831)
Q Consensus 389 GtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tgTl~~~~~~-~~~~~~ 467 (831)
|+++.|+.|.++++|++....+++....|++|+++.+++..+|.+|+||+++.|.|+++.+.+|.|+++.+.+ ....++
T Consensus 498 g~~~~~q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFr 577 (971)
T KOG0468|consen 498 GQVVTGQDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFR 577 (971)
T ss_pred cceeecceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeecc
Confidence 9999999999999999887777777889999999999999999999999999999999999999999877642 145678
Q ss_pred cccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEcC
Q 003316 468 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 547 (831)
Q Consensus 468 ~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~ 547 (831)
++.+.+.||+++++||.++++++||.+||++.++.+|.+....+|+||++|.|.|||+|++++++||+-| +.|++++++
T Consensus 578 pl~~~t~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkVEESGEHvilGtGElYmDcvlyDLR~~y-seieikvaD 656 (971)
T KOG0468|consen 578 PLKFNTEPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKVEESGEHVILGTGELYMDCVLYDLRKSY-SEIEIKVAD 656 (971)
T ss_pred chhcCCcceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEehhhcCceEEecCchhhHHHHHHHHHHHH-hhhceeecC
Confidence 9999899999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred ceEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEecc
Q 003316 548 PVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGP 627 (831)
Q Consensus 548 p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p 627 (831)
|.|.|.||+.++++..|..+++|+.|+|.|.+|||...+.++|++|.+......++..++++..|+||..++++||+|||
T Consensus 657 Pvv~F~Et~vetssikcfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgp 736 (971)
T KOG0468|consen 657 PVVRFCETVVETSSIKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGP 736 (971)
T ss_pred ceeEEEEeeecccchhhhccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCC
Confidence 99999999999999999999999999999999999999999999988776677888899999999999999999999999
Q ss_pred CCCCCceEEeccc----cccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHH
Q 003316 628 ETIGPNMVVDMCK----GVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIY 703 (831)
Q Consensus 628 ~~~g~n~~~~~~~----g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~ 703 (831)
+.+|+|+++|+|- ..+.+..++++|++||||++++||||+||+++|+|+|.|+.+.++..+++++|+++++|++++
T Consensus 737 d~~GpNiL~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~Y 816 (971)
T KOG0468|consen 737 DYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAY 816 (971)
T ss_pred CCCCCceeecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHH
Confidence 9999999999973 456788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCcee
Q 003316 704 ASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFP 783 (831)
Q Consensus 704 ~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 783 (831)
.||..|.|+||||+|.|||++|.+++..|+..|++|||+|....+..|++.+.|+|++|+.|||||.||||..|+|+|.|
T Consensus 817 safL~AtPrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C 896 (971)
T KOG0468|consen 817 SAFLMATPRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFC 896 (971)
T ss_pred HHHHhhchhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecceeecCCCCCCC------------ChhHHHHHHHHHHhcCCCCCCCCccccccc
Q 003316 784 QCVFDHWDMMSSDPLEP------------GSQASQLVLDIRKRKGLKEQMTPLSEYEDK 830 (831)
Q Consensus 784 ~~~f~~y~~v~~d~~~~------------~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~ 830 (831)
++.|.||++|||||+|+ +.+||++|.++||||||.|+ ++..+|+|+
T Consensus 897 ~~vF~HW~~VPGDpLDKsi~i~~Lep~p~~~LaReFmiKTRRRKGlsed-vS~~kffd~ 954 (971)
T KOG0468|consen 897 LSVFDHWRIVPGDPLDKSIAIRPLEPAPIRHLAREFMIKTRRRKGLSED-VSINKFFDD 954 (971)
T ss_pred HHhhhhcccCCCCccccccccccCCCCCcchhHHHHHHHhhhhcccccc-cccCcccch
Confidence 99999999999999985 56999999999999999999 488899884
No 5
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=4.9e-127 Score=1146.96 Aligned_cols=708 Identities=42% Similarity=0.705 Sum_probs=618.2
Q ss_pred cHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechh
Q 003316 5 TAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA 84 (831)
Q Consensus 5 ~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~ 84 (831)
..++|.++|+++++||||+|+||+|||||||+++|++.+|.+.+...|..+++|+.++|++|||||+++.+++.|.+
T Consensus 6 ~~~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~--- 82 (731)
T PRK07560 6 MVEKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY--- 82 (731)
T ss_pred HHHHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe---
Confidence 37899999999999999999999999999999999999999988777878899999999999999999999999852
Q ss_pred hhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchh
Q 003316 85 ALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCF 152 (831)
Q Consensus 85 ~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~ 152 (831)
++.++++||||||||.||..++.++++.+|+||+|||+.+ +...+.|+|+|+||||+..
T Consensus 83 ---------~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 83 ---------EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI 153 (731)
T ss_pred ---------cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc
Confidence 2347899999999999999999999999999999999997 3445677788999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhhhhhhhccCCCC-CCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHH
Q 003316 153 LELQVDGEEAYQTFQKVIENANVIMATYEDPLL-GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMER 231 (831)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~ 231 (831)
.+++.+++++++++.+++++++.++..+..+.. ..+.++|..++|.|+|+.+||+|.++.+.... .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~-----~-------- 220 (731)
T PRK07560 154 KELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTG-----I-------- 220 (731)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhC-----C--------
Confidence 999999999999999999999988876643322 34567898999999999999999876432111 0
Q ss_pred hhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHh
Q 003316 232 LWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ 311 (831)
Q Consensus 232 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~ 311 (831)
.| +++++.|+++ +.+++ .
T Consensus 221 --------------------------~~-------------------~~l~e~~~~~-----~~~~l------------~ 238 (731)
T PRK07560 221 --------------------------KF-------------------KDIIDYYEKG-----KQKEL------------A 238 (731)
T ss_pred --------------------------CH-------------------HHHHHHHhcC-----CHHHH------------H
Confidence 01 1122223211 11222 3
Q ss_pred cccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEe
Q 003316 312 TWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKV 391 (831)
Q Consensus 312 ~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL 391 (831)
+|+|+.++|||+|++|+|||.+++.++...++.+...++.....+.||+++|++|+|||+.++++.|. ++|+|||||+|
T Consensus 239 ~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~-va~~RV~sGtL 317 (731)
T PRK07560 239 EKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGE-VATGRVFSGTL 317 (731)
T ss_pred hhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCe-EEEEEEEEeEE
Confidence 56999999999999999999998877777776553333333456789999999999999999998886 99999999999
Q ss_pred cCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCcccccccc
Q 003316 392 ATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMK 470 (831)
Q Consensus 392 ~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~ 470 (831)
++||.|++.++ +.+ ++|++|+.++|++..++++++|||||++.|++++ .+| ||++... ..+++++.
T Consensus 318 ~~Gd~v~~~~~----~~~-----~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~--~~GdtL~~~~~--~~~~~~~~ 384 (731)
T PRK07560 318 RKGQEVYLVGA----KKK-----NRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDA--RAGETVVSVED--MTPFESLK 384 (731)
T ss_pred cCCCEEEEcCC----CCc-----eEeheehhhhcCCCceeeeECCCCEEEEEccccc--ccCCEEeCCCc--cccccccc
Confidence 99999997643 222 7999999999999999999999999999999887 578 9988765 66777765
Q ss_pred ccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEcCce
Q 003316 471 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPV 549 (831)
Q Consensus 471 ~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~ 549 (831)
+.|+|+++++|+|.++.|.++|.+||++|.+|||+|+|..+ +|||++|+||||+|||++++||+++| ++++++++|+
T Consensus 385 ~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~--~vev~~~~p~ 462 (731)
T PRK07560 385 HISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDY--GIEVVTSEPI 462 (731)
T ss_pred cCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHh--CCceEecCCE
Confidence 44599999999999999999999999999999999999998 89999999999999999999999999 9999999999
Q ss_pred EeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhh---hcCCchhccceEEEec
Q 003316 550 VSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSE---EFGWDKDLAKKIWCFG 626 (831)
Q Consensus 550 V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~---~~~~~~~~~~~i~~~~ 626 (831)
|+|||||.+++.. +..+++++|++++++++|++.+..+.++.|.....++.+.+ ..|.. ++||+...++++|+|+
T Consensus 463 V~yrETI~~~~~~-~~~~~~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~~~~i~~~~ 540 (731)
T PRK07560 463 VVYRETVRGKSQV-VEGKSPNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEA-KILREKLIEAGMDKDEAKRVWAIY 540 (731)
T ss_pred EEEEEecccCccc-eEEECCCCceEEEEEEEECCHHHHHHHhcCCcccccchHHH-HHHHHhhhhcCCchhhhhceeecc
Confidence 9999999988631 23356788999999999999988888888876544444444 55554 8999999999999983
Q ss_pred cCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHH
Q 003316 627 PETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 706 (831)
Q Consensus 627 p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al 706 (831)
++|+|+|.+.|+.++++++++|++||++|+++|||||+||+||+|+|+|+++|.|+.++..++|++|+++||++|+
T Consensus 541 ----~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~ 616 (731)
T PRK07560 541 ----NGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAM 616 (731)
T ss_pred ----CCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999988888888999999999999999
Q ss_pred HhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEE
Q 003316 707 LTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCV 786 (831)
Q Consensus 707 ~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 786 (831)
++|+|+||||||+|||+||++++|+|++||++|||+|++++..+ ++++|+|++|++|||||+++|||+|+|+|+|+|+
T Consensus 617 ~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~--~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 694 (731)
T PRK07560 617 LTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEG--DMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTE 694 (731)
T ss_pred HhCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCC--CcEEEEEEEehHHhcCCchHHHhhCcCCceEEEE
Confidence 99999999999999999999999999999999999999988643 5799999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCChhHHHHHHHHHHhcCCCCCCCCcccccc
Q 003316 787 FDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYED 829 (831)
Q Consensus 787 f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~ 829 (831)
|+||++||++ +++++|+++|+||||+++||.+++|+|
T Consensus 695 f~~y~~v~~~------~~~~ii~~~r~rKGl~~~~~~~~~~~~ 731 (731)
T PRK07560 695 FAGFEPVPDS------LQLDIVRQIRERKGLKPELPKPEDFLS 731 (731)
T ss_pred eccceeCCHH------HHHHHHHHHHhhCCCCCCCCChhhhcC
Confidence 9999999975 699999999999999999999999986
No 6
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-124 Score=1091.32 Aligned_cols=655 Identities=35% Similarity=0.538 Sum_probs=545.6
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceE----EecCchhhheeceeeeeceeEEEEeechhhhhcccc
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR----MTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 91 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~----~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (831)
.+++|||+|+||+|||||||+|+||+++|.+++ +|+++ +||++++|++|||||+++.+++.|.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k--~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~----------- 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISK--IGEVHDGAATMDWMEQEQERGITITSAATTLFWK----------- 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCC--CccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc-----------
Confidence 688999999999999999999999999999999 77766 9999999999999999999999996
Q ss_pred ccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCH
Q 003316 92 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDG 159 (831)
Q Consensus 92 ~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~ 159 (831)
.+++|||||||||+||..||.+|||++||||+||||++ +.++++|+++|||||||. +++.
T Consensus 74 ----~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~----~a~~ 145 (697)
T COG0480 74 ----GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRL----GADF 145 (697)
T ss_pred ----CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccc----ccCh
Confidence 14999999999999999999999999999999999998 556678999999999999 5553
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccC--cceeEEeehhHHHHhhhhcCCChHHHHHHhhcccc
Q 003316 160 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 237 (831)
Q Consensus 160 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~ 237 (831)
....+.++..+.. .|...|+|+++. ..|| +|...+....|++
T Consensus 146 ~~~~~~l~~~l~~------------------~~~~v~~pIg~~~~f~g~----------------idl~~~~~~~~~~-- 189 (697)
T COG0480 146 YLVVEQLKERLGA------------------NPVPVQLPIGAEEEFEGV----------------IDLVEMKAVAFGD-- 189 (697)
T ss_pred hhhHHHHHHHhCC------------------CceeeeccccCccccCce----------------eEhhhcCeEEEcC--
Confidence 3333333222221 112225555542 2333 4455556666762
Q ss_pred cCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc
Q 003316 238 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 316 (831)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 316 (831)
.....|...| ....+...+.+.++++.+++.|++++++||++ .+++.+++. +++++.+. ..++|+
T Consensus 190 --~~~~~~~~ip-------~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g--~e~~~~~i~---~~i~~~~~~~~~~pv 255 (697)
T COG0480 190 --GAKYEWIEIP-------ADLKEIAEEAREKLLEALAEFDEELMEKYLEG--EEPTEEEIK---KALRKGTIAGKIVPV 255 (697)
T ss_pred --CcccceeeCC-------HHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcC--CCccHHHHH---HHHHHhhhccceeeE
Confidence 1111242222 12223334456788999999999999999988 778888887 45555544 355553
Q ss_pred ----------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCcccccc-ccccCCCCCeEEEEEEeecCCCCCceeEEEE
Q 003316 317 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANA-IRNCDPEGPLMLYVSKMIPASDKGRFFAFGR 385 (831)
Q Consensus 317 ----------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~R 385 (831)
+++|||+|++|||||.+.+.. .|..+++.... ...+++++|++|+|||+..+++.|. ++|+|
T Consensus 256 l~gsa~kn~gv~~lLdav~~~lPsP~e~~~~------~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~-l~~~R 328 (697)
T COG0480 256 LCGSAFKNKGVQPLLDAVVDYLPSPLDVPPI------KGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK-LTFVR 328 (697)
T ss_pred EeeecccCCcHHHHHHHHHHHCCChhhcccc------cccCCccccchhcccCCCCCceEEEEEEeEecCCCCe-EEEEE
Confidence 899999999999999988743 22222221112 2234568999999999999999887 99999
Q ss_pred EEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCcc
Q 003316 386 VFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAH 464 (831)
Q Consensus 386 V~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~ 464 (831)
||||+|++|+.+++.+ .+.+ +||++|+.|+|.+.+++++++||||+++.||+++ .+| |+|+... +.
T Consensus 329 vysGtl~~G~~v~n~~----~~~~-----erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~--~tGdTl~~~~~--~v 395 (697)
T COG0480 329 VYSGTLKSGSEVLNST----KGKK-----ERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA--TTGDTLCDENK--PV 395 (697)
T ss_pred EeccEEcCCCEEEeCC----CCcc-----EEEEEEEEccCCceeecccccCccEEEEEccccc--ccCCeeecCCC--cc
Confidence 9999999999999643 3333 8999999999999999999999999999999997 788 9998774 67
Q ss_pred ccccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceE
Q 003316 465 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEI 543 (831)
Q Consensus 465 ~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v 543 (831)
.++.+.+| .||++++|||++++|++||.+||++|++|||+++++.| ||||++|+|||||||||+++||+++| +|++
T Consensus 396 ~~~~~~~p-ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~--~Vev 472 (697)
T COG0480 396 ILESMEFP-EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREF--GVEV 472 (697)
T ss_pred ccccccCC-CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhc--CceE
Confidence 88999998 99999999999999999999999999999999999997 99999999999999999999999999 9999
Q ss_pred EEcCceEeEEeeeecccceeEe----eecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhcc
Q 003316 544 IKSDPVVSFRETVLEKSCRTVM----SKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLA 619 (831)
Q Consensus 544 ~~~~p~V~yrETi~~~~~~~~~----~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 619 (831)
++++|+|+|||||.+.+..... ++++++|+++++++||++.+
T Consensus 473 ~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~---------------------------------- 518 (697)
T COG0480 473 EVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDG---------------------------------- 518 (697)
T ss_pred EecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCC----------------------------------
Confidence 9999999999999988753221 22455566666666665421
Q ss_pred ceEEEeccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHH
Q 003316 620 KKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTAR 699 (831)
Q Consensus 620 ~~i~~~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~ 699 (831)
..+.|.+.+.|+..+.++.+++.+||++|+++|||+||||+|++|+|.|+++|.+. +...+|..|++
T Consensus 519 -----------~~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~pv~dvkv~L~dgs~h~vd--ss~~af~~a~~ 585 (697)
T COG0480 519 -----------SGFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYPVVDVKVTLLDGSYHEVD--SSEMAFKIAAS 585 (697)
T ss_pred -----------cceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCceEeeEEEEEcCccccCC--CCHHHHHHHHH
Confidence 14667777777888889999999999999999999999999999999999999732 33457889999
Q ss_pred HHHHHHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCC
Q 003316 700 RVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSG 779 (831)
Q Consensus 700 ~a~~~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G 779 (831)
+||++|+.+|+|+||||||+|||++|++++|+|+++|++|||+|++++...++.+++|+|++|++|||||+++|||+|+|
T Consensus 586 ~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~G 665 (697)
T COG0480 586 LAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQG 665 (697)
T ss_pred HHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCceEEEEEEechHHhccchhhhHhhcCC
Confidence 99999999999999999999999999999999999999999999999998666789999999999999999999999999
Q ss_pred CceeEEEecceeecCCCCCCCChhHHHHHHHHHHhcCC
Q 003316 780 QAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGL 817 (831)
Q Consensus 780 ~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl 817 (831)
+|.|+|+|+||++||.+ ++++++.+.|+|||+
T Consensus 666 ra~~~m~f~~y~~vp~~------~a~~ii~~~~~~~~~ 697 (697)
T COG0480 666 RASFSMEFDHYEEVPSS------VAEEIIAKRRKRKGL 697 (697)
T ss_pred ceeEEEEecccEeCCHH------HHHHHHHHhhhhcCC
Confidence 99999999999999964 699999999999986
No 7
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-124 Score=1037.09 Aligned_cols=791 Identities=37% Similarity=0.654 Sum_probs=666.5
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccc
Q 003316 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (831)
Q Consensus 13 ~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (831)
....++|||||+++|+|||||||+++|+..+|.|+++.+|+.|++|++++||.||||++++.+++...
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~------------ 70 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHK------------ 70 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccC------------
Confidence 34568899999999999999999999999999999999999999999999999999999999997664
Q ss_pred cCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHH
Q 003316 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGE 160 (831)
Q Consensus 93 ~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~ 160 (831)
++.+||||+|||+||.+|+..|.+.+|+|+++||+++ +|.++..||+|||||||++.|++++|.
T Consensus 71 ----~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ 146 (887)
T KOG0467|consen 71 ----DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQ 146 (887)
T ss_pred ----ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChH
Confidence 9999999999999999999999999999999999999 678899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCC-----------CCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHH
Q 003316 161 EAYQTFQKVIENANVIMATYEDP-----------LLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMM 229 (831)
Q Consensus 161 ~~~~~l~~~~~~~~~~l~~~~~~-----------~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~ 229 (831)
|+|.++-++++++|..+.++-.. ....++|.|.+|||.|+++.+||+|.+++|++.|.++.+.+...+.
T Consensus 147 ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~ 226 (887)
T KOG0467|consen 147 EAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALL 226 (887)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhh
Confidence 99999999999999999865211 0113689999999999999999999999999999999999999999
Q ss_pred HHhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHH-HhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHH
Q 003316 230 ERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINI-CMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKR 308 (831)
Q Consensus 230 ~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~-~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~ 308 (831)
+.+||++|+++++++..... ..+..+++|.+++|+|+|++|+. +.+.|.+.+++....+|+.+..++++ .++.+
T Consensus 227 k~lwgd~y~~~ktk~I~~~~-~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~----~ll~~ 301 (887)
T KOG0467|consen 227 KFLWGDRYIDPKTKRICEGK-KLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLR----NLLDA 301 (887)
T ss_pred hhhccceeecchhhhhhccc-CcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHH----HHHHH
Confidence 99999999999887665443 12334899999999999999995 55568899999999999998888775 78899
Q ss_pred HHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCC---CccccccccccCCCCCeEEEEEEeecCCCCC----cee
Q 003316 309 VMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPL---DDAYANAIRNCDPEGPLMLYVSKMIPASDKG----RFF 381 (831)
Q Consensus 309 i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g----~~l 381 (831)
+|++|+|+.+..+-+++..+|+|.+.+..+...+...+. +.+...+...|++++|.++||.|+...+.+. +++
T Consensus 302 im~~wLPls~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~ 381 (887)
T KOG0467|consen 302 IMSTWLPLSDAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLL 381 (887)
T ss_pred HHHhhcccccchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhhe
Confidence 999999999999999999999999999988877755321 1233456677899999999999998755432 258
Q ss_pred EEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccceeeecCCCC
Q 003316 382 AFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEV 461 (831)
Q Consensus 382 ~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tgTl~~~~~~ 461 (831)
+|+||||||++.|+.+|+.++ .+.+.+.+.+.+|.+||+++|++..+.+++++||+++|.| ...+.+++|||+...
T Consensus 382 ~~ari~sgTlr~g~~v~v~~p--d~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g-~~~vlks~TL~s~~~- 457 (887)
T KOG0467|consen 382 AFARIFSGTLRVGQVVYVLGP--DPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGG-AGIVLKSATLCSKVP- 457 (887)
T ss_pred eeeeeccCceeeccEeeecCC--CCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecc-cceEeccceecccCC-
Confidence 999999999999999999877 2333334557899999999999999999999999999999 676778889999854
Q ss_pred CccccccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCCcEEEEecchHHHHHHHHHHHhhcCCCc
Q 003316 462 DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGA 541 (831)
Q Consensus 462 ~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v 541 (831)
+.++....|..+|.++++|+|.++.++++|.++|+.|...||++++..+++||+++...||+|||.|+.+|+. | +++
T Consensus 458 -~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~e-f-a~i 534 (887)
T KOG0467|consen 458 -CGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKE-F-AKI 534 (887)
T ss_pred -CcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhh-h-hce
Confidence 4554446777799999999999999999999999999999999999999999999999999999999999999 8 899
Q ss_pred eEEEcCceEeEEeeeeccccee-------EeeecCCCeeEEEEEEEeCChhhHHHHHc----------CCCC--CCCC--
Q 003316 542 EIIKSDPVVSFRETVLEKSCRT-------VMSKSPNKHNRLYMEARPLEEGLAEAIDD----------GRIG--PRDD-- 600 (831)
Q Consensus 542 ~v~~~~p~V~yrETi~~~~~~~-------~~~~~~~~~~~~~~~~ePl~~~~~~~i~~----------g~~~--~~~~-- 600 (831)
++++++|.|+||||+.+.+... .....+.+.-++..++.|+...+.+.+.. |.-. +.++
T Consensus 535 ~i~vSeP~vpfrET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~ 614 (887)
T KOG0467|consen 535 EISVSEPLVPFRETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQ 614 (887)
T ss_pred EEEecCCccchhhhccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccccccccc
Confidence 9999999999999996654321 00011222234566677776433222111 0000 0000
Q ss_pred ---hhH---HHHHhhhhcCC------chhccceEEEeccCCCCCceEEecccc--------ccchHHHHHHHHHHHHHHH
Q 003316 601 ---PKV---RSKILSEEFGW------DKDLAKKIWCFGPETIGPNMVVDMCKG--------VQYLNEIKDSVVAGFQWAS 660 (831)
Q Consensus 601 ---~~~---~~~~l~~~~~~------~~~~~~~i~~~~p~~~g~n~~~~~~~g--------~~~~~~~~~~i~~G~~~a~ 660 (831)
+.+ ....+...+.. ...+..++|+|||.+.|+|+|.+.... ..+...+.+++..|||.++
T Consensus 615 k~~~~e~ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~ 694 (887)
T KOG0467|consen 615 KGSFEENLSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLAT 694 (887)
T ss_pred cccccccccHHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhh
Confidence 000 01111111110 012235678999999999999886432 2223337789999999999
Q ss_pred HcCCccCCCceeeEEEEEeecccc-cccccCCCchHHHHHHHHHHHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhc
Q 003316 661 KEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQK 739 (831)
Q Consensus 661 ~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~R 739 (831)
..||||.||+.|++|.+..+.... ++...-.||+++|++.+||+|++...|||+.|||.|+|++..+++|+||.+|++|
T Consensus 695 ~sGPlc~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR 774 (887)
T KOG0467|consen 695 SSGPLCNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKR 774 (887)
T ss_pred ccCcccccCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhh
Confidence 999999999999999998854433 2211223799999999999999999999999999999999999999999999999
Q ss_pred cceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEecceeecCCCCCCC----------------Chh
Q 003316 740 RGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEP----------------GSQ 803 (831)
Q Consensus 740 rg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~~~~----------------~~~ 803 (831)
+|+|+++++.+||+.|.|+|++|+.|+|||+.+||..|+|.|++++.|+||+.++.||||- .|+
T Consensus 775 ~gkVLsEem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefGekADs~N~ 854 (887)
T KOG0467|consen 775 HGKVLSEEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFGEKADSENI 854 (887)
T ss_pred cchhhhhhhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHhhhcccchhH
Confidence 9999999999999999999999999999999999999999999999999999999999983 589
Q ss_pred HHHHHHHHHHhcCC--CCCCCCcccccccC
Q 003316 804 ASQLVLDIRKRKGL--KEQMTPLSEYEDKL 831 (831)
Q Consensus 804 ~~~~~~~~r~rkGl--~~~i~~~~~~~~~~ 831 (831)
||+||+.+|||||| +|+|++++++|++|
T Consensus 855 ArkYMdaVRRRKGLfVEEkIVE~AEKQRTL 884 (887)
T KOG0467|consen 855 ARKYMDAVRRRKGLFVEEKIVEHAEKQRTL 884 (887)
T ss_pred HHHHHHHHHhhcCCchHHHHhhhHHhhccc
Confidence 99999999999999 89999999999986
No 8
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=1.7e-121 Score=1095.99 Aligned_cols=700 Identities=38% Similarity=0.666 Sum_probs=601.0
Q ss_pred cHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechh
Q 003316 5 TAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA 84 (831)
Q Consensus 5 ~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~ 84 (831)
..++|.++|++++++|||+|+||+|||||||+++|++.+|.+++...|..+++|+.++|++||+|+.++.+++.|.
T Consensus 5 ~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~---- 80 (720)
T TIGR00490 5 MIDKIKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHE---- 80 (720)
T ss_pred HHHHHHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEe----
Confidence 3689999999999999999999999999999999999999998877777788999999999999999998886653
Q ss_pred hhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchh
Q 003316 85 ALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCF 152 (831)
Q Consensus 85 ~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~ 152 (831)
.+++++++||||||||.+|..++.++++.+|+||+|+|+.+ +...+.|+++|+||||+..
T Consensus 81 --------~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 81 --------YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred --------ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence 13358899999999999999999999999999999999986 2244567788999999998
Q ss_pred hccCCCHHHHHHHHHHHHHHhhhhhhhccCCC-CCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHH
Q 003316 153 LELQVDGEEAYQTFQKVIENANVIMATYEDPL-LGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMER 231 (831)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~ 231 (831)
.+++..+++++.+|.+++..++..+.....+. .+.+.+.|..+++.|+|+..+|+|++++|.... ++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~-----~~------- 220 (720)
T TIGR00490 153 NELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTG-----IG------- 220 (720)
T ss_pred chhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcC-----CC-------
Confidence 88888999999999999999988875432211 123457788899999999999999887552110 00
Q ss_pred hhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHh
Q 003316 232 LWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ 311 (831)
Q Consensus 232 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~ 311 (831)
+ ++ |.+++.. .. .++ +.
T Consensus 221 ---------------------------~--------~~------------l~~~~~~--~~--~~~------------~~ 237 (720)
T TIGR00490 221 ---------------------------F--------KD------------IYKYCKE--DK--QKE------------LA 237 (720)
T ss_pred ---------------------------H--------HH------------HHHHHHh--cc--HHH------------Hh
Confidence 0 01 2223322 00 111 12
Q ss_pred cccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEe
Q 003316 312 TWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKV 391 (831)
Q Consensus 312 ~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL 391 (831)
+|+|++++|||+|++|+|||.+++.+++..++.++.+++.......||+++|++|+|||+..+++.|. ++|+|||||+|
T Consensus 238 ~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~-ia~~RV~sGtL 316 (720)
T TIGR00490 238 KKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGE-VAVGRLYSGTI 316 (720)
T ss_pred hhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcE-EEEEEEEeCEE
Confidence 48999999999999999999988776766555442222223456789999999999999999888886 99999999999
Q ss_pred cCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCcccccccc
Q 003316 392 ATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMK 470 (831)
Q Consensus 392 ~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~ 470 (831)
++||.|++.++ +.+ ++|++|+.++|.+..++++|.|||||++.|++++ .+| ||++.... ..+++++.
T Consensus 317 ~~G~~l~~~~~----~~~-----~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~--~~GdtL~~~~~~-~~~~~~~~ 384 (720)
T TIGR00490 317 RPGMEVYIVDR----KAK-----ARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDA--VAGETICTTVEN-ITPFESIK 384 (720)
T ss_pred cCCCEEEEcCC----CCe-----eEeeEEEEeccCCccCccEECCCCEEEEECcccc--ccCceeecCCcc-cccCcccc
Confidence 99999997653 222 7999999999999999999999999999999987 577 99876531 34456665
Q ss_pred ccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEcCce
Q 003316 471 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPV 549 (831)
Q Consensus 471 ~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~ 549 (831)
+.++|+++++|+|.++.|.++|.+||++|++|||+|+|..+ +|||++|+||||+|||++++||+++| ++++++++|+
T Consensus 385 ~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~--~vev~~~~P~ 462 (720)
T TIGR00490 385 HISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDY--GLDVETSPPI 462 (720)
T ss_pred cCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHh--CCceeecCCE
Confidence 34599999999999999999999999999999999999997 89999999999999999999999999 9999999999
Q ss_pred EeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCC-CCChhHHHHHhhhhcCCchhccceEEEeccC
Q 003316 550 VSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGP-RDDPKVRSKILSEEFGWDKDLAKKIWCFGPE 628 (831)
Q Consensus 550 V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~-~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~ 628 (831)
|+|||||.+.++. ...+.+++|++++++++|++.++.+.|++|.+.. ....+.+...| ..|||+..+++++|+|+
T Consensus 463 V~YrETi~~~~~~-~~~~~~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~-- 538 (720)
T TIGR00490 463 VVYRETVTGTSPV-VEGKSPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLL-IEAGMDSEEAARVEEYY-- 538 (720)
T ss_pred EEEEEeccccccc-eEEEcCCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHH-HhcCCchhhhcCEEEec--
Confidence 9999999988752 1234477899999999999999888999887652 23456677777 46999999999999996
Q ss_pred CCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHh
Q 003316 629 TIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLT 708 (831)
Q Consensus 629 ~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~ 708 (831)
++|.|++.+.|+.+++++++||++||+||+++||||||||+||+|+|+|+++|.|+.++..++|++|+++||++|+++
T Consensus 539 --~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~ 616 (720)
T TIGR00490 539 --EGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQ 616 (720)
T ss_pred --CCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999999999999999999999997777777789999999999999999
Q ss_pred cCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEec
Q 003316 709 AKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFD 788 (831)
Q Consensus 709 a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~ 788 (831)
|+|+||||||+|||+||++++|+|++||++|||+|++++... +.++|+|++|++|||||+++||++|+|+|+|+|+|+
T Consensus 617 a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~--~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~ 694 (720)
T TIGR00490 617 AKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEG--DMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHA 694 (720)
T ss_pred CCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccCC--CcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEec
Confidence 999999999999999999999999999999999999887532 579999999999999999999999999999999999
Q ss_pred ceeecCCCCCCCChhHHHHHHHHHHhcCCCCC
Q 003316 789 HWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQ 820 (831)
Q Consensus 789 ~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~ 820 (831)
||++||++ ++++++.++|+||||+++
T Consensus 695 ~y~~vp~~------~~~~ii~~~r~rkgl~~~ 720 (720)
T TIGR00490 695 GFELVPQN------LQQEFVMEVRKRKGLKLE 720 (720)
T ss_pred ccccCCHH------HHHHHHHHHHhhcCCCCC
Confidence 99999976 599999999999999874
No 9
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-122 Score=1007.17 Aligned_cols=649 Identities=25% Similarity=0.392 Sum_probs=548.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc--CCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~--~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (831)
+++|||+|++|.|+|||||+|++||++|.+.... .|..+.||+++.||+|||||+++++++.|.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~-------------- 102 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR-------------- 102 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--------------
Confidence 5799999999999999999999999999887631 122468999999999999999999999996
Q ss_pred CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcchhhccCCCHHHH
Q 003316 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRCFLELQVDGEEA 162 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~~~~~~~~~~~~ 162 (831)
++.|||||||||+||..||++|||+.||||+|+|++. .++ .++|.|.|||||||. ++++-.+
T Consensus 103 --~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRm----Ga~~~~~ 176 (721)
T KOG0465|consen 103 --DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRM----GASPFRT 176 (721)
T ss_pred --cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhc----CCChHHH
Confidence 8999999999999999999999999999999999998 222 345667799999999 9985444
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcC--CChHHHHHHhhcccccCc
Q 003316 163 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG--VDESKMMERLWGENFFDP 240 (831)
Q Consensus 163 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~--i~~~~l~~~lw~~~~~~~ 240 (831)
+++++..+.. .|..-++|+++.. +|. +|+...++.+|.+.-
T Consensus 177 -------l~~i~~kl~~-----------~~a~vqiPig~e~----------------~f~GvvDlv~~kai~~~g~~--- 219 (721)
T KOG0465|consen 177 -------LNQIRTKLNH-----------KPAVVQIPIGSES----------------NFKGVVDLVNGKAIYWDGEN--- 219 (721)
T ss_pred -------HHHHHhhcCC-----------chheeEccccccc----------------cchhHHhhhhceEEEEcCCC---
Confidence 4444443321 3344477887652 332 777777778885321
Q ss_pred CCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc---
Q 003316 241 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA--- 316 (831)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~--- 316 (831)
...+...+ ......+...+.+..|+|.+++.|+++.+.||++ .+++.++|+ .+++|+.+ ++|+|+
T Consensus 220 -g~~i~~~e-----IP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee--~~ps~~~l~---~aIRr~Ti~r~fvPVl~G 288 (721)
T KOG0465|consen 220 -GEIVRKDE-----IPEDLEELAEEKRQALIETLADVDETLAEMFLEE--EEPSAQQLK---AAIRRATIKRSFVPVLCG 288 (721)
T ss_pred -CceeEecc-----CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcc--CCCCHHHHH---HHHHHHHhhcceeeEEec
Confidence 11222222 2345667777889999999999999999999998 778888887 67888755 789997
Q ss_pred -------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCC-CeEEEEEEeecCCCCCceeEEEEEEe
Q 003316 317 -------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEG-PLMLYVSKMIPASDKGRFFAFGRVFS 388 (831)
Q Consensus 317 -------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-pl~a~VfK~~~~~~~g~~l~~~RV~s 388 (831)
+|+|||+|++|||||.|..++.+.+-.+ +++ ......+++. ||+|++||+..+++ |+ ++|+|||+
T Consensus 289 SAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~---~~e--kv~l~~~~d~~Pfv~LAFKle~g~f-Gq-LTyvRvYq 361 (721)
T KOG0465|consen 289 SALKNKGVQPLLDAVVDYLPSPSEVENYALNKETN---SKE--KVTLSPSRDKDPFVALAFKLEEGRF-GQ-LTYVRVYQ 361 (721)
T ss_pred hhhcccCcchHHHHHHHhCCChhhhcccccccCCC---Ccc--ceEeccCCCCCceeeeEEEeeecCc-cc-eEEEEEee
Confidence 8999999999999999998876652111 111 2333333333 99999999999888 77 99999999
Q ss_pred eEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccc
Q 003316 389 GKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIR 467 (831)
Q Consensus 389 GtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~ 467 (831)
|+|++||.+| |.+++++ +|+++|+.||++..++|+++.||||||+.|++. .+| |+++... ....+.
T Consensus 362 G~L~kG~~iy----N~rtgKK-----vrv~RL~rmHa~~medV~~v~AG~I~alfGidc---asGDTftd~~~-~~~~m~ 428 (721)
T KOG0465|consen 362 GTLSKGDTIY----NVRTGKK-----VRVGRLVRMHANDMEDVNEVLAGDICALFGIDC---ASGDTFTDKQN-LALSME 428 (721)
T ss_pred eeecCCcEEE----ecCCCce-----eEhHHHhHhcccccchhhhhhccceeeeecccc---ccCceeccCcc-ccceee
Confidence 9999999999 6777766 899999999999999999999999999999954 588 9998742 156678
Q ss_pred cccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEc
Q 003316 468 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 546 (831)
Q Consensus 468 ~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~ 546 (831)
.+.+| +||+++||+|.+..|.+++.+||.++.+|||||++..| |+||++|+|||||||||..+||+++| ++++.+|
T Consensus 429 si~vP-ePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy--~~~~~~G 505 (721)
T KOG0465|consen 429 SIHIP-EPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREY--KVDAELG 505 (721)
T ss_pred eeecC-CCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHh--CCccccC
Confidence 88886 99999999999999999999999999999999999998 99999999999999999999999999 9999999
Q ss_pred CceEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEec
Q 003316 547 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFG 626 (831)
Q Consensus 547 ~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 626 (831)
+|+|+|||||..++++. ..|++ |+|+. +||+- .+-.++
T Consensus 506 kp~VayRETi~~~~~f~------~~hKk----------------qSgG~--------------gqy~k------v~g~~e 543 (721)
T KOG0465|consen 506 KPQVAYRETITSPVEFD------YTHKK----------------QSGGA--------------GQYGK------VEGVIE 543 (721)
T ss_pred CceeeehhhcCCcccce------eeecc----------------ccCCC--------------ccccc------eeeEEe
Confidence 99999999999887653 33555 67765 67773 122355
Q ss_pred cCCCC---CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccc-cccccCCCchHHHHHHHH
Q 003316 627 PETIG---PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVI 702 (831)
Q Consensus 627 p~~~g---~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~ 702 (831)
|-+.+ ...|.+.+.|...+.++.+++++||.++++.|||.|+|+.|+++.|.||.+|. ||++.+ |+.|++.|+
T Consensus 544 pl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~ela---f~~at~~a~ 620 (721)
T KOG0465|consen 544 PLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELA---FMKATRNAF 620 (721)
T ss_pred ecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccCCcccceEEEEecCCcCcccccHHH---HHHHHHHHH
Confidence 54332 35788999999999999999999999999999999999999999999999998 877776 668999999
Q ss_pred HHHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCce
Q 003316 703 YASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAF 782 (831)
Q Consensus 703 ~~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~ 782 (831)
++|+.+|+|++|||||.|||++|+|++|.|+++|++|+|+|.+.+..+ ++++|.|.|||.+||||+++|||+|+|+|.
T Consensus 621 r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~--~~~ti~A~VPL~~mfgYss~LRslTqGkge 698 (721)
T KOG0465|consen 621 REAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSE--DYKTIKAEVPLNEMFGYSSELRSLTQGKGE 698 (721)
T ss_pred HHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCC--ceEEEEecccHHHHhhhhhhhhhhhcCcce
Confidence 999999999999999999999999999999999999999999988755 699999999999999999999999999999
Q ss_pred eEEEecceeecCCCCCCCChhHHHHHH
Q 003316 783 PQCVFDHWDMMSSDPLEPGSQASQLVL 809 (831)
Q Consensus 783 ~~~~f~~y~~v~~d~~~~~~~~~~~~~ 809 (831)
|+|+|++|+++|.+. +.+++.
T Consensus 699 ftMEys~y~p~~~~v------q~~~~~ 719 (721)
T KOG0465|consen 699 FTMEYSRYSPVPPDV------QDQLVH 719 (721)
T ss_pred EEEeecccCCCchHH------HHHhhc
Confidence 999999999999985 666543
No 10
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=2.1e-112 Score=1015.90 Aligned_cols=653 Identities=28% Similarity=0.425 Sum_probs=544.0
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc--cCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccccc
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (831)
+++||||+|+||+|||||||+++|++.+|.+.+. ..+..+++|+.++|++||+|++++.+++.|.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~------------- 71 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK------------- 71 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC-------------
Confidence 4689999999999999999999999999987652 0112579999999999999999999999996
Q ss_pred CCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHH
Q 003316 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEE 161 (831)
Q Consensus 94 ~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~ 161 (831)
++++||||||||.+|..++.++++.+|+||+|||+.+ +...+.|.++|+||||+. +++..+
T Consensus 72 ---~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~----~~~~~~ 144 (691)
T PRK12739 72 ---GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRI----GADFFR 144 (691)
T ss_pred ---CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHH
Confidence 8899999999999999999999999999999999986 223456777799999999 776443
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcC
Q 003316 162 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 241 (831)
Q Consensus 162 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~ 241 (831)
.. ++++..+.. .+...++|++.. .++.- .+|...+..++|++...
T Consensus 145 ~~-------~~i~~~l~~-----------~~~~~~iPis~~-~~f~g-------------~vd~~~~~~~~~~~~~~--- 189 (691)
T PRK12739 145 SV-------EQIKDRLGA-----------NAVPIQLPIGAE-DDFKG-------------VIDLIKMKAIIWDDETL--- 189 (691)
T ss_pred HH-------HHHHHHhCC-----------CceeEEeccccc-ccceE-------------EEEcchhhhhhccCCCC---
Confidence 33 333332211 111224555443 11110 15667778889976411
Q ss_pred CCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc----
Q 003316 242 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA---- 316 (831)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~---- 316 (831)
+.++...+ ....+.+++++++++|++.+++.|+++|++||++ .+++.+++. .++.+.++ ++|+|+
T Consensus 190 ~~~~~~~~-----~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~--~~~~~~~l~---~~l~~~~~~~~~~Pv~~gS 259 (691)
T PRK12739 190 GAKYEEED-----IPADLKEKAEEYREKLIEAVAEVDEELMEKYLEG--EEITEEEIK---AAIRKATINMEFFPVLCGS 259 (691)
T ss_pred CCeeEEcC-----CCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhcc--CCCCHHHHH---HHHHHHHHcCCEEEEEecc
Confidence 22343332 2345778999999999999999999999999987 678888886 44555544 689997
Q ss_pred ------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeE
Q 003316 317 ------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGK 390 (831)
Q Consensus 317 ------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGt 390 (831)
+++|||+|++++|||.+++..+...... + ....+.||+++|++|+|||+.++++.|+ ++|+|||||+
T Consensus 260 a~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~----~--~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sGt 332 (691)
T PRK12739 260 AFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDT----E--EEIERPASDDEPFAALAFKIMTDPFVGR-LTFFRVYSGV 332 (691)
T ss_pred ccCCccHHHHHHHHHHHCCChhhccccccccCCC----C--cceeeccCCCCCeEEEEEEeeeCCCCCe-EEEEEEeeeE
Confidence 7999999999999998876554432211 1 2356789999999999999999999887 9999999999
Q ss_pred ecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccc
Q 003316 391 VATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAM 469 (831)
Q Consensus 391 L~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~ 469 (831)
|++||.|++ .+++++ ++|++||.++|++..++++++|||||+|.|++++ ++| ||++... +..++++
T Consensus 333 L~~g~~v~~----~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~~--~~~l~~~ 399 (691)
T PRK12739 333 LESGSYVLN----TTKGKK-----ERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDT--TTGDTLCDEKA--PIILESM 399 (691)
T ss_pred EcCCCEEEe----CCCCce-----EEecceEEEecCCcccccccCCCCEEEEeCCCcc--cCCCEEeCCCC--ccccCCC
Confidence 999999984 333433 7999999999999999999999999999999986 788 9988765 6677888
Q ss_pred cccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEcCc
Q 003316 470 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDP 548 (831)
Q Consensus 470 ~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p 548 (831)
.++ .|+++++|+|.+++|.++|.+||++|.+|||+|+|.++ +|||++|+||||||||+|++||+++| ++++++++|
T Consensus 400 ~~~-~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f--~vev~~s~p 476 (691)
T PRK12739 400 EFP-EPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREF--KVEANVGAP 476 (691)
T ss_pred CCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHh--CCeeEecCC
Confidence 886 99999999999999999999999999999999999997 89999999999999999999999999 999999999
Q ss_pred eEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEE-Eecc
Q 003316 549 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIW-CFGP 627 (831)
Q Consensus 549 ~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~-~~~p 627 (831)
+|+|||||.+.++. .++|++ ++|+. ++|+ .++ .++|
T Consensus 477 ~V~yrEti~~~~~~------~~~~~~----------------~s~g~--------------~~~~-------~v~l~~~P 513 (691)
T PRK12739 477 QVAYRETITKSVEA------EGKYKK----------------QSGGR--------------GQYG-------DVWIEFEP 513 (691)
T ss_pred EEEEeeccCCcccc------cceecc----------------ccCCC--------------Ccee-------EEEEEEEE
Confidence 99999999987632 344443 44432 3333 244 3777
Q ss_pred CCCC-CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccc-cccccCCCchHHHHHHHHHHH
Q 003316 628 ETIG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYAS 705 (831)
Q Consensus 628 ~~~g-~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~a 705 (831)
...| ++.|.+++.|+.++++++++|++||+||+++|||||+||+||+|+|.|+++|. |+.+ ++|+.|+++||++|
T Consensus 514 ~~~~~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~s~~---~~~~~a~~~a~~~a 590 (691)
T PRK12739 514 NEEGKGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSE---LAFKIAASMALKEA 590 (691)
T ss_pred CCCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeccCCCCCcH---HHHHHHHHHHHHHH
Confidence 5443 58899999999999999999999999999999999999999999999999996 5443 45779999999999
Q ss_pred HHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEE
Q 003316 706 QLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 785 (831)
Q Consensus 706 l~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 785 (831)
+++|+|+||||||+|||+||++++|+|+++|++|||+|++++..++ .+.|+|++|++|+|||+++||++|+|+|+|+|
T Consensus 591 ~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~--~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~ 668 (691)
T PRK12739 591 AKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGG--AQIVKAFVPLSEMFGYATDLRSATQGRATFSM 668 (691)
T ss_pred HHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccCC--cEEEEEEeCHHHhhccHHHHHhhccCceEEEE
Confidence 9999999999999999999999999999999999999999887653 67899999999999999999999999999999
Q ss_pred EecceeecCCCCCCCChhHHHHHHH
Q 003316 786 VFDHWDMMSSDPLEPGSQASQLVLD 810 (831)
Q Consensus 786 ~f~~y~~v~~d~~~~~~~~~~~~~~ 810 (831)
+|+||+++|++. +++++++
T Consensus 669 ~f~~y~~v~~~~------~~~ii~~ 687 (691)
T PRK12739 669 EFDHYEEVPKNI------AEEIIKK 687 (691)
T ss_pred EeccceECCHHH------HHHHHHH
Confidence 999999999764 7787755
No 11
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=1.3e-111 Score=1008.17 Aligned_cols=654 Identities=28% Similarity=0.408 Sum_probs=536.1
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc--cCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccccc
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (831)
.++||||+|+||+|||||||+|+|++.+|.+.+. ..+..+++|+.++|++||+|++++.+++.|.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~------------- 73 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK------------- 73 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC-------------
Confidence 5789999999999999999999999999987652 1112579999999999999999999999996
Q ss_pred CCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHH
Q 003316 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEE 161 (831)
Q Consensus 94 ~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~ 161 (831)
++++||||||||.||..++.+|++.+|+||+|||+.+ +...+.|.++|+||||+. +++..+
T Consensus 74 ---~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~----~~~~~~ 146 (693)
T PRK00007 74 ---DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRT----GADFYR 146 (693)
T ss_pred ---CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCC----CCCHHH
Confidence 8899999999999999999999999999999999976 334456777799999999 777444
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcC
Q 003316 162 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 241 (831)
Q Consensus 162 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~ 241 (831)
+.+.+++ .++.. +....+|+++. .|+.-. +|+..+..++|++.. .
T Consensus 147 ~~~~i~~---~l~~~---------------~~~~~ipisa~-~~f~g~-------------~d~~~~~~~~~~~~~---~ 191 (693)
T PRK00007 147 VVEQIKD---RLGAN---------------PVPIQLPIGAE-DDFKGV-------------VDLVKMKAIIWNEAD---L 191 (693)
T ss_pred HHHHHHH---HhCCC---------------eeeEEecCccC-CcceEE-------------EEcceeeeeecccCC---C
Confidence 3333322 22211 11124555432 221100 344556667886421 1
Q ss_pred CCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc----
Q 003316 242 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA---- 316 (831)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~---- 316 (831)
+.++...+ ......+++.+++++|++.+++.|+++|++||++ ++++.+++. .++.++++ ++|+|+
T Consensus 192 ~~~~~~~~-----~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~--~~l~~~~l~---~~l~~~~~~~~~~Pv~~gS 261 (693)
T PRK00007 192 GATFEYEE-----IPADLKDKAEEYREKLIEAAAEADEELMEKYLEG--EELTEEEIK---AALRKATIANEIVPVLCGS 261 (693)
T ss_pred CCcceEcc-----CCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCc--CCCCHHHHH---HHHHHHHhcCcEEEEEecc
Confidence 22333322 1234567888999999999999999999999986 889999987 55555554 589997
Q ss_pred ------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeE
Q 003316 317 ------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGK 390 (831)
Q Consensus 317 ------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGt 390 (831)
+++|||+|++++|+|.+++..+... .+.......+.||+++|++|||||+.++++.|+ ++|+|||||+
T Consensus 262 a~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-ia~~RV~sGt 335 (693)
T PRK00007 262 AFKNKGVQPLLDAVVDYLPSPLDVPAIKGIL-----PDGEEEEVERKASDDEPFSALAFKIMTDPFVGK-LTFFRVYSGV 335 (693)
T ss_pred cccCcCHHHHHHHHHHHCCChhhcccccccC-----CCccccceeecCCCCCCeEEEEEEeeecCCCCc-EEEEEEeeeE
Confidence 5999999999999998765432100 011112356789999999999999999999887 9999999999
Q ss_pred ecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccc
Q 003316 391 VATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAM 469 (831)
Q Consensus 391 L~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~ 469 (831)
|++||.|++ .+++++ ++|++||.++|.+..+|++++|||||++.|++++ ++| ||++.+. +..++++
T Consensus 336 l~~g~~v~~----~~~~~~-----eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~GdtL~~~~~--~~~l~~~ 402 (693)
T PRK00007 336 LESGSYVLN----STKGKK-----ERIGRILQMHANKREEIKEVRAGDIAAAVGLKDT--TTGDTLCDEKN--PIILESM 402 (693)
T ss_pred EcCCCEEEe----CCCCce-----eEeceeEEeccCCcccccccCCCcEEEEeCCccC--CcCCEeeCCCC--ccccCCC
Confidence 999999994 333333 7999999999999999999999999999999886 788 9988766 6677788
Q ss_pred cccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEcCc
Q 003316 470 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDP 548 (831)
Q Consensus 470 ~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p 548 (831)
.++ .|+++++|+|.++.|.++|.+||++|.+|||||+|..+ +|||++|+||||||||+|++||+++| ++++++++|
T Consensus 403 ~~~-~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~--~vev~~s~p 479 (693)
T PRK00007 403 EFP-EPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREF--KVEANVGKP 479 (693)
T ss_pred CCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHh--CCeeEecCC
Confidence 776 99999999999999999999999999999999999997 89999999999999999999999999 999999999
Q ss_pred eEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEE-ecc
Q 003316 549 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC-FGP 627 (831)
Q Consensus 549 ~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~p 627 (831)
+|+|||||.++++. .++|++ +.|+. +||+ .+|. ++|
T Consensus 480 ~V~yrETi~~~~~~------~~~~~~----------------~~gg~--------------~~~~-------~v~l~~eP 516 (693)
T PRK00007 480 QVAYRETIRKKVEV------EGKFVK----------------QSGGR--------------GQYG-------HVVIEFEP 516 (693)
T ss_pred EEEEeecccCcccc------Cccccc----------------ccCCC--------------CceE-------EEEEEEEe
Confidence 99999999987632 334433 33332 2333 2443 555
Q ss_pred CCC-CCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccc-cccccCCCchHHHHHHHHHHH
Q 003316 628 ETI-GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYAS 705 (831)
Q Consensus 628 ~~~-g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~a 705 (831)
... ..+.|.+.+.|+.++++++++|++||++|+++|||||+||+||+|+|+|+.+|. |+.+ ++|..|+++||++|
T Consensus 517 ~~~~~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~---~~~~~a~~~a~~~a 593 (693)
T PRK00007 517 NEPGKGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSE---MAFKIAGSMAFKEA 593 (693)
T ss_pred CCCCCCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccCCCCCcH---HHHHHHHHHHHHHH
Confidence 433 247788888888999999999999999999999999999999999999999996 6544 45778999999999
Q ss_pred HHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEE
Q 003316 706 QLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 785 (831)
Q Consensus 706 l~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 785 (831)
+++|+|+||||||+|+|+||++++|+|+++|++|||+|++++..+ +++.|+|.+|++|||||+++||++|+|+|+|+|
T Consensus 594 ~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~--~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~ 671 (693)
T PRK00007 594 AKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRG--GAKVIRAEVPLSEMFGYATDLRSMTQGRATYSM 671 (693)
T ss_pred HHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccccC--CcEEEEEEcCHHHhhccHHHHHhhcCCceEEEE
Confidence 999999999999999999999999999999999999999987654 478999999999999999999999999999999
Q ss_pred EecceeecCCCCCCCChhHHHHHHH
Q 003316 786 VFDHWDMMSSDPLEPGSQASQLVLD 810 (831)
Q Consensus 786 ~f~~y~~v~~d~~~~~~~~~~~~~~ 810 (831)
+|+||++||++. +++++.+
T Consensus 672 ~f~~y~~v~~~~------~~~~~~~ 690 (693)
T PRK00007 672 EFDHYEEVPKNV------AEEIIKK 690 (693)
T ss_pred EeceeeECCHHH------HHHHHHH
Confidence 999999999874 6666544
No 12
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=3e-109 Score=989.66 Aligned_cols=651 Identities=27% Similarity=0.391 Sum_probs=529.7
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc---cCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccc
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 91 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~---~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (831)
.+++||||+|+||+|||||||+|+|++.+|.+.+. ..| .+++|+.++|++||+|+++...++.|.
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g-~~~~D~~~~e~~rgiti~~~~~~~~~~----------- 73 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDG-AATMDWMEQEKERGITITSAATTVFWK----------- 73 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC-ccccCCCHHHHhcCCCEecceEEEEEC-----------
Confidence 35789999999999999999999999999988652 123 478999999999999999999999996
Q ss_pred ccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCH
Q 003316 92 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDG 159 (831)
Q Consensus 92 ~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~ 159 (831)
+++++|||||||.+|..++.++++.+|+||+|||+.+ +...+.|.++|+||+|+. +++.
T Consensus 74 -----~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~----~~~~ 144 (689)
T TIGR00484 74 -----GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKT----GANF 144 (689)
T ss_pred -----CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCC----CCCH
Confidence 8899999999999999999999999999999999986 122355667799999999 7774
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccC
Q 003316 160 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 239 (831)
Q Consensus 160 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~ 239 (831)
.+..+.+++. +.. .+....+|++.. .++.-. +|......+ +|+
T Consensus 145 ~~~~~~i~~~-------l~~-----------~~~~~~ipis~~-~~~~~~-------------id~~~~~~~-----~~~ 187 (689)
T TIGR00484 145 LRVVNQIKQR-------LGA-----------NAVPIQLPIGAE-DNFIGV-------------IDLVEMKAY-----FFN 187 (689)
T ss_pred HHHHHHHHHH-------hCC-----------CceeEEeccccC-CCceEE-------------EECccceEE-----ecc
Confidence 4444333332 210 111224555432 221100 233332222 333
Q ss_pred cCC-CceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc-
Q 003316 240 PAT-RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA- 316 (831)
Q Consensus 240 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~- 316 (831)
... ..+... .....+.+++.+++.+|++.+++.|+++|++||++ .+++.+++. +++.++++ ++++|+
T Consensus 188 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~--~~~~~~~l~---~~l~~~~~~~~~~PV~ 257 (689)
T TIGR00484 188 GDKGTKAIEK-----EIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEG--EELTIEEIK---NAIRKGVLNCEFFPVL 257 (689)
T ss_pred cCCCceeeec-----cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC--CCCCHHHHH---HHHHHHHhcCCEEEEE
Confidence 221 112221 23456788899999999999999999999999986 788888886 55666654 578886
Q ss_pred ---------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEE
Q 003316 317 ---------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVF 387 (831)
Q Consensus 317 ---------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~ 387 (831)
+++|||+|++++|+|.+++..+.... +......+.|++++|++|+|||+.++++.|+ ++|+|||
T Consensus 258 ~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~------~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-i~~~RV~ 330 (689)
T TIGR00484 258 CGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDP------DTEKEIERKASDDEPFSALAFKVATDPFVGQ-LTFVRVY 330 (689)
T ss_pred eccccCCccHHHHHHHHHHHCCCchhcccccccCC------CCCceeeecCCCCCceEEEEEEeeecCCCCe-EEEEEEE
Confidence 59999999999999987654322110 1112345788999999999999999999886 9999999
Q ss_pred eeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCcccc
Q 003316 388 SGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPI 466 (831)
Q Consensus 388 sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~ 466 (831)
||+|++||.|++ .+.+++ +++++||.++|.+..++++++|||||++.|++++ .+| ||++... +..+
T Consensus 331 sGtL~~g~~v~~----~~~~~~-----~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~~--~~~~ 397 (689)
T TIGR00484 331 SGVLKSGSYVKN----SRKNKK-----ERVGRLVKMHANNREEIKEVRAGDICAAIGLKDT--TTGDTLCDPKI--DVIL 397 (689)
T ss_pred EeEEcCCCEEEe----CCCCce-----EEecceEEeecCCcccccccCCCCEEEEcCCCCC--CCCCEEeCCCC--cccc
Confidence 999999999994 333333 7999999999999999999999999999999887 677 9988766 6667
Q ss_pred ccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEE
Q 003316 467 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIK 545 (831)
Q Consensus 467 ~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~ 545 (831)
+++.++ +|+++++|+|.++.|.++|.+||++|.+|||+|+|..+ +|||++|+||||||||+|++||+++| ++++++
T Consensus 398 ~~~~~~-~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~--~vev~~ 474 (689)
T TIGR00484 398 ERMEFP-EPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREF--KVEANV 474 (689)
T ss_pred CCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHh--CCeeEe
Confidence 778775 99999999999999999999999999999999999997 89999999999999999999999999 999999
Q ss_pred cCceEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEE-
Q 003316 546 SDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC- 624 (831)
Q Consensus 546 ~~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~- 624 (831)
++|+|+|||||.++++. .++|++ ++|+. ++|+ .||.
T Consensus 475 ~~p~V~yrEti~~~~~~------~~~~~~----------------~~~~~--------------~~~~-------~v~l~ 511 (689)
T TIGR00484 475 GAPQVAYRETIRSKVEV------EGKHAK----------------QSGGR--------------GQYG-------HVKIR 511 (689)
T ss_pred cCCEEEEeecccCcccc------cccccc----------------ccCCC--------------CceE-------EEEEE
Confidence 99999999999987642 233332 33221 2222 2433
Q ss_pred eccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccc-cccccCCCchHHHHHHHHH
Q 003316 625 FGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIY 703 (831)
Q Consensus 625 ~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~ 703 (831)
++|...+++.|.+.+.++..+.+++++|++||+||+++|||||+||+||+|+|+|+++|. |+.. .+|+.|+++||+
T Consensus 512 ~eP~~~~g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~---~~~~~a~~~a~~ 588 (689)
T TIGR00484 512 FEPLEPKGYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSE---MAFKLAASLAFK 588 (689)
T ss_pred EEECCCCCcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeecCCCCCCH---HHHHHHHHHHHH
Confidence 455434456677777888889999999999999999999999999999999999999996 5543 356789999999
Q ss_pred HHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCcee
Q 003316 704 ASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFP 783 (831)
Q Consensus 704 ~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 783 (831)
+|+++|+|+||||||+|||+||++++|+|+++|++|||+|++++..+ +.+.|+|++|++|||||+++||++|+|+|+|
T Consensus 589 ~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~--~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~ 666 (689)
T TIGR00484 589 EAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARG--NVQKIKAEVPLSEMFGYATDLRSFTQGRGTY 666 (689)
T ss_pred HHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccC--CcEEEEEEeCHHHHhChHHHHHHhcCCceEE
Confidence 99999999999999999999999999999999999999999987654 5799999999999999999999999999999
Q ss_pred EEEecceeecCCCCCCCChhHHHHHHH
Q 003316 784 QCVFDHWDMMSSDPLEPGSQASQLVLD 810 (831)
Q Consensus 784 ~~~f~~y~~v~~d~~~~~~~~~~~~~~ 810 (831)
+|+|+||++||+++ +++++++
T Consensus 667 ~~~f~~y~~v~~~~------~~~ii~~ 687 (689)
T TIGR00484 667 SMEFLHYGEVPSSV------ANEIIEK 687 (689)
T ss_pred EEEeccceeCCHHH------HHHHHHh
Confidence 99999999999986 7777654
No 13
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=2.3e-106 Score=967.50 Aligned_cols=649 Identities=28% Similarity=0.400 Sum_probs=528.4
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc---CCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccc
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV---AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~---~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (831)
++++|||+|+||+|||||||+++|++.+|.+.+.. .| .+.+|+.++|++||+|+.++..++.|.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~-~~~~d~~~~e~~r~~ti~~~~~~~~~~------------ 71 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDG-TTVTDWMPQEQERGITIESAATSCDWD------------ 71 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCC-cccCCCCHHHHhcCCCcccceEEEEEC------------
Confidence 46799999999999999999999999999877631 12 468999999999999999999999996
Q ss_pred cCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCCcEEEEecCcchhhccCCCHH
Q 003316 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIRPVLTVNKMDRCFLELQVDGE 160 (831)
Q Consensus 93 ~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~~ii~iNKiD~~~~~~~~~~~ 160 (831)
++.++|||||||.||..++..+++.+|++|+|+|+.+ .+ ..+.|.++|+||+|+. +++..
T Consensus 72 ----~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~----~~~~~ 143 (687)
T PRK13351 72 ----NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV----GADLF 143 (687)
T ss_pred ----CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC----CCCHH
Confidence 7899999999999999999999999999999999986 12 2345666799999999 88744
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCc
Q 003316 161 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 240 (831)
Q Consensus 161 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~ 240 (831)
+.+++++..+... . ...+.|..++ +...||. |+..+..+.|+.. .
T Consensus 144 -------~~~~~i~~~l~~~---~--~~~~~P~~~~----~~~~g~i----------------d~~~~~~~~~~~~---~ 188 (687)
T PRK13351 144 -------KVLEDIEERFGKR---P--LPLQLPIGSE----DGFEGVV----------------DLITEPELHFSEG---D 188 (687)
T ss_pred -------HHHHHHHHHHCCC---e--EEEEeccccC----CceEEEE----------------ECccceEEecccC---C
Confidence 4444444443210 0 0112343332 2234442 2223334456432 1
Q ss_pred CCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc---
Q 003316 241 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA--- 316 (831)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~--- 316 (831)
.+..+...+ ....+.+++++++++|++.+++.|++++++||++ .+++.+++. .++++.+. ++|+|+
T Consensus 189 ~~~~~~~~~-----~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~--~~l~~~~l~---~~~~~~~~~~~~~PV~~g 258 (687)
T PRK13351 189 GGSTVEEGP-----IPEELLEEVEEAREKLIEALAEFDDELLELYLEG--EELSAEQLR---APLREGTRSGHLVPVLFG 258 (687)
T ss_pred CCCceEEcc-----CCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCEEEEEec
Confidence 122343332 2346888999999999999999999999999985 889999987 33444433 689997
Q ss_pred -------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEee
Q 003316 317 -------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSG 389 (831)
Q Consensus 317 -------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sG 389 (831)
+++|||+|++++|+|.+++..+... . +. ....+.|++++|++|+|||+.++++.|. ++|+|||||
T Consensus 259 SA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~--~----~~-~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sG 330 (687)
T PRK13351 259 SALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK--D----NG-KPVKVDPDPEKPLLALVFKVQYDPYAGK-LTYLRVYSG 330 (687)
T ss_pred ccCcCccHHHHHHHHHHHCCChhhcccccccC--C----CC-CceeecCCCCCCeEEEEEEeeecCCCce-EEEEEEeEE
Confidence 6899999999999998765443321 0 00 1123678999999999999999998886 999999999
Q ss_pred EecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCcccccc
Q 003316 390 KVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRA 468 (831)
Q Consensus 390 tL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~ 468 (831)
+|++||.|++.++ +.+ +++++||.++|.+..++++++|||||++.|++++ .+| ||++... ..++++
T Consensus 331 tl~~g~~v~~~~~----~~~-----~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~~--~~~~~~ 397 (687)
T PRK13351 331 TLRAGSQLYNGTG----GKR-----EKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKEL--ETGDTLHDSAD--PVLLEL 397 (687)
T ss_pred EEcCCCEEEeCCC----CCc-----eEeeeEEEEccCCeeECCccCCCCEEEEECcccC--ccCCEEeCCCC--ccccCC
Confidence 9999999997642 222 7999999999999999999999999999999987 677 9988765 556677
Q ss_pred ccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEcC
Q 003316 469 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 547 (831)
Q Consensus 469 ~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~ 547 (831)
+.++ +|+++++|||.+++|.++|.+||++|.+|||+|+|+.+ +|||++|+||||||||++++||+++| ++++++++
T Consensus 398 ~~~~-~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~--~vev~~~~ 474 (687)
T PRK13351 398 LTFP-EPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREF--KLEVNTGK 474 (687)
T ss_pred CCCC-CccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh--CCceEecC
Confidence 7665 99999999999999999999999999999999999998 89999999999999999999999999 99999999
Q ss_pred ceEeEEeeeecccceeEeee----cCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEE
Q 003316 548 PVVSFRETVLEKSCRTVMSK----SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIW 623 (831)
Q Consensus 548 p~V~yrETi~~~~~~~~~~~----~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~ 623 (831)
|+|+|||||.+.++.....+ ..+.+..++++++|++.
T Consensus 475 p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~--------------------------------------- 515 (687)
T PRK13351 475 PQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLER--------------------------------------- 515 (687)
T ss_pred CeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCC---------------------------------------
Confidence 99999999998764321111 11223444455554431
Q ss_pred EeccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHH
Q 003316 624 CFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIY 703 (831)
Q Consensus 624 ~~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~ 703 (831)
..+|.|.+.+.|..++++++++|++||++|+++|||||+||+||+|+|+|+++|.+.+ ..++|++|+++||+
T Consensus 516 ------~~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~pv~~v~v~l~~~~~~~~~s--~~~~~~~a~~~a~~ 587 (687)
T PRK13351 516 ------GAGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGYPVTDLRVTVLDGKYHPVDS--SESAFKAAARKAFL 587 (687)
T ss_pred ------CCCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCCceeeEEEEEEEecCCCCCC--CHHHHHHHHHHHHH
Confidence 1137788888888999999999999999999999999999999999999999997322 35789999999999
Q ss_pred HHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCcee
Q 003316 704 ASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFP 783 (831)
Q Consensus 704 ~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 783 (831)
+|+++|+|+||||||+|||+||++++|+|+++|++|||+|++++..+++ .+.|+|++|++|||||+++||++|+|+|+|
T Consensus 588 ~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~-~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~ 666 (687)
T PRK13351 588 EAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDG-EVLVKAEAPLAELFGYATRLRSMTKGRGSF 666 (687)
T ss_pred HHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCc-EEEEEEEECHHHhhChHHHHHhhcCCceEE
Confidence 9999999999999999999999999999999999999999999876543 334999999999999999999999999999
Q ss_pred EEEecceeecCCCCCCCChhHHHHH
Q 003316 784 QCVFDHWDMMSSDPLEPGSQASQLV 808 (831)
Q Consensus 784 ~~~f~~y~~v~~d~~~~~~~~~~~~ 808 (831)
+|+|+||++||+++ +++++
T Consensus 667 ~~~f~~y~~v~~~~------~~~~~ 685 (687)
T PRK13351 667 TMEFSHFDPVPPAV------QKKVG 685 (687)
T ss_pred EEEeccceeCCHHH------HHHHh
Confidence 99999999999886 66654
No 14
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=8.7e-100 Score=909.62 Aligned_cols=629 Identities=28% Similarity=0.418 Sum_probs=513.2
Q ss_pred EeCCCCCHHHHHHHHHHHcCCcccc---cCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeEE
Q 003316 25 IAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLIN 101 (831)
Q Consensus 25 vGh~~~GKTTL~~~ll~~~g~i~~~---~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (831)
+||+|||||||+++|++.+|.+.+. ..| .+++|+.+.|++||+|+.++..++.|. ++.++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~-~~~~d~~~~e~~rgiTi~~~~~~~~~~----------------~~~i~ 63 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDG-TTTMDFMPEERERGISITSAATTCEWK----------------GHKIN 63 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCC-cccCCCChHHHhcCCCeeeceEEEEEC----------------CEEEE
Confidence 6999999999999999999998762 112 379999999999999999999999996 89999
Q ss_pred EEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHHHHHHHH
Q 003316 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKV 169 (831)
Q Consensus 102 liDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~~~l~~~ 169 (831)
|||||||.+|..++.++++.+|++|+|||+.+ +...+.|.++|+||+|+. +.+..++.+.+++
T Consensus 64 liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~----~~~~~~~~~~l~~- 138 (668)
T PRK12740 64 LIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRA----GADFFRVLAQLQE- 138 (668)
T ss_pred EEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHHHHHH-
Confidence 99999999999999999999999999999987 122345667799999998 7664444333333
Q ss_pred HHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCCceeecC
Q 003316 170 IENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKWTSRN 249 (831)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~~~~~~~ 249 (831)
.+.. . ......|... +++..||...+ ....+ +|+ .++.+...+
T Consensus 139 ------~l~~---~--~~~~~~p~~~----~~~~~~~id~~----------------~~~~~-----~~~-~~~~~~~~~ 181 (668)
T PRK12740 139 ------KLGA---P--VVPLQLPIGE----GDDFTGVVDLL----------------SMKAY-----RYD-EGGPSEEIE 181 (668)
T ss_pred ------HHCC---C--ceeEEecccC----CCCceEEEECc----------------cceEE-----Eec-CCCeeEEec
Confidence 2211 0 0011223322 23344442211 11111 333 233333322
Q ss_pred CCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHH-Hhccccc----------HH
Q 003316 250 TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRV-MQTWLPA----------SS 318 (831)
Q Consensus 250 ~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i-~~~~~P~----------~~ 318 (831)
....+.+++.+++++|++.+++.|++++++||++ ++++.+++.. ++.+.+ .++|+|+ ++
T Consensus 182 -----~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~--~~l~~~~~~~---~~~~~~~~~~~~Pv~~gSA~~~~Gv~ 251 (668)
T PRK12740 182 -----IPAELLDRAEEAREELLEALAEFDDELMEKYLEG--EELSEEEIKA---GLRKATLAGEIVPVFCGSALKNKGVQ 251 (668)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCC--CCCCHHHHHH---HHHHHHHcCCEEEEEeccccCCccHH
Confidence 2345678888999999999999999999999987 7888888873 344443 3789998 89
Q ss_pred HHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEE
Q 003316 319 ALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVR 398 (831)
Q Consensus 319 ~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~ 398 (831)
.|||+|++++|+|.++++.. +. ......+..|++++|++|+|||+.++++.|. ++|+|||||+|++||.|+
T Consensus 252 ~LLd~i~~~lPsp~~~~~~~------~~--~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~-i~~~RV~sG~L~~g~~v~ 322 (668)
T PRK12740 252 RLLDAVVDYLPSPLEVPPVD------GE--DGEEGAELAPDPDGPLVALVFKTMDDPFVGK-LSLVRVYSGTLKKGDTLY 322 (668)
T ss_pred HHHHHHHHHCCChhhccccc------CC--CCccccccccCCCCCeEEEEEEeeecCCCCc-EEEEEEeeeEEcCCCEEE
Confidence 99999999999998765321 11 0112245678999999999999999998886 999999999999999999
Q ss_pred EcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccccccCCceE
Q 003316 399 IMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVV 477 (831)
Q Consensus 399 v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~ 477 (831)
+.++ +++ +++++|+.++|++.+++++|+|||||++.|++.+ .+| ||++... ..+++++.++ +|++
T Consensus 323 ~~~~----~~~-----~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~--~~Gdtl~~~~~--~~~~~~~~~~-~P~~ 388 (668)
T PRK12740 323 NSGT----GKK-----ERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDA--ATGDTLCDKGD--PILLEPMEFP-EPVI 388 (668)
T ss_pred eCCC----CCc-----EEecceeeecCCCccccCccCCCCEEEEeccCcc--CCCCEEeCCCC--ccccCCCCCC-Ccce
Confidence 7542 222 7999999999999999999999999999999875 678 9987765 5677888886 9999
Q ss_pred EEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEcCceEeEEeee
Q 003316 478 RVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV 556 (831)
Q Consensus 478 ~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrETi 556 (831)
+++|+|.++.|.++|.+||++|.+|||+|+|..+ +|||++|+||||||||++++||+++| ++++.+++|+|+|||||
T Consensus 389 ~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~--~~~v~~~~p~V~yrEti 466 (668)
T PRK12740 389 SLAIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREY--GVEVETGPPQVPYRETI 466 (668)
T ss_pred EEEEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh--CceeEecCCeeEEeecc
Confidence 9999999999999999999999999999999998 89999999999999999999999999 99999999999999999
Q ss_pred ecccceeEeee-c---CCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCC
Q 003316 557 LEKSCRTVMSK-S---PNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGP 632 (831)
Q Consensus 557 ~~~~~~~~~~~-~---~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~ 632 (831)
.++++.....+ . .+.+..++++++|++.+ ..
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~---------------------------------------------~~ 501 (668)
T PRK12740 467 RKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRG---------------------------------------------EG 501 (668)
T ss_pred CCCccccceeccccCCCCceEEEEEEEEECCCC---------------------------------------------Cc
Confidence 98764322211 1 12234567777776531 12
Q ss_pred ceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccc-cccccCCCchHHHHHHHHHHHHHhcCC
Q 003316 633 NMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKP 711 (831)
Q Consensus 633 n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~p 711 (831)
+.|.+.+.++.++++++++|++||++|+++|||||+||+||+|+|+++.+|. |+ ..++|+.|+++||++|+++|+|
T Consensus 502 ~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~~~~~s---~~~~~~~a~~~a~~~a~~~a~~ 578 (668)
T PRK12740 502 FEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSYHSVDS---SEMAFKIAARLAFREALPKAKP 578 (668)
T ss_pred eEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccccCCC---CHHHHHHHHHHHHHHHHHhcCC
Confidence 4556666777888999999999999999999999999999999999999996 43 3456889999999999999999
Q ss_pred eeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEeccee
Q 003316 712 RLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWD 791 (831)
Q Consensus 712 ~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~ 791 (831)
+||||||+|||+||++++|+|+++|++|||+|++++..++ .+.|+|++|++|||||+++||++|+|+|+|+|+|+||+
T Consensus 579 ~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~ 656 (668)
T PRK12740 579 VLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGG--GDVVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYE 656 (668)
T ss_pred eeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCC--CEEEEEEcCHHHhhchHHHHHHhcCCeEEEEEEecccc
Confidence 9999999999999999999999999999999999887654 38999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 003316 792 MMSSDP 797 (831)
Q Consensus 792 ~v~~d~ 797 (831)
++|+++
T Consensus 657 ~~~~~~ 662 (668)
T PRK12740 657 EVPGNV 662 (668)
T ss_pred cCCHHH
Confidence 999875
No 15
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-93 Score=739.90 Aligned_cols=646 Identities=26% Similarity=0.365 Sum_probs=505.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCc----eEEecCchhhheeceeeeeceeEEEEeechhhhhccccc
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (831)
.++|||+|++|+|+||||.++++||.+|.++. +|. .+++|+...||+||||++++.++|.|.
T Consensus 35 akirnigiiahidagktttterily~ag~~~s--~g~vddgdtvtdfla~erergitiqsaav~fdwk------------ 100 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHS--AGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK------------ 100 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhc--ccccCCCchHHHHHHHHHhcCceeeeeeeecccc------------
Confidence 57999999999999999999999999999987 443 368999999999999999999999996
Q ss_pred cCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--------Hhh----hCCCcEEEEecCcchhhccCCCHH
Q 003316 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--------ALG----ERIRPVLTVNKMDRCFLELQVDGE 160 (831)
Q Consensus 93 ~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~--------~~~----~~~~~ii~iNKiD~~~~~~~~~~~ 160 (831)
+++||+||||||+||.-||++++|+.||||.|+|+.. .|+ .+.|.+.|+||||+. .++++
T Consensus 101 ----g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~----~anfe 172 (753)
T KOG0464|consen 101 ----GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKL----AANFE 172 (753)
T ss_pred ----cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhh----hhhhh
Confidence 9999999999999999999999999999999999997 232 234557799999999 88755
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCc
Q 003316 161 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 240 (831)
Q Consensus 161 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~ 240 (831)
.+...+++ .+. ..|.+.++|++.+.. |..-| +|...-.+.+|+-+.-
T Consensus 173 ~avdsi~e-------kl~-----------ak~l~l~lpi~eak~--------fnkg~-----ldil~ke~l~~ncnsn-- 219 (753)
T KOG0464|consen 173 NAVDSIEE-------KLG-----------AKALKLQLPIGEAKG--------FNKGF-----LDILHKEKLLGNCNSN-- 219 (753)
T ss_pred hHHHHHHH-------HhC-----------CceEEEEeccccccc--------ccchH-----HHHHHHhhccCCCCCC--
Confidence 54444443 332 134445677777621 11001 4444444456742221
Q ss_pred CCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCC---CCHHHHHHhHHHHHHH-HHhccccc
Q 003316 241 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVT---MKSEEKELMGKALMKR-VMQTWLPA 316 (831)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~---l~~~el~~~~~~l~~~-i~~~~~P~ 316 (831)
..+.|...|- ...-.+++.+...+....|.+.+++.|++.-.++|+++... ++.++++ .++.+- ++++..|+
T Consensus 220 dgkd~e~~pl-le~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~elk---sai~~lt~aq~a~~i 295 (753)
T KOG0464|consen 220 DGKDFENKPL-LEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAEELK---SAIHELTCAQKAAPI 295 (753)
T ss_pred ccccccCCcc-cccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHH---HHHHHHhhhhhhcce
Confidence 2234654441 01124566777778889999999999999999999998653 5667775 334332 34667775
Q ss_pred ----------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEE
Q 003316 317 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 386 (831)
Q Consensus 317 ----------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV 386 (831)
+|+|||++.-|+|||.+++ |.+-.+|+ ..++|+.||+.+|..+|+ ++|.||
T Consensus 296 ~cgsaiknkgiqplldavtmylpspeern-yeflqwyk-----------------ddlcalafkvlhdkqrg~-l~fmri 356 (753)
T KOG0464|consen 296 LCGSAIKNKGIQPLLDAVTMYLPSPEERN-YEFLQWYK-----------------DDLCALAFKVLHDKQRGP-LSFMRI 356 (753)
T ss_pred ehhhhhcccCccchhhhhhhccCChhhcc-hHHHhhhh-----------------hhHHHHhhhhhcccccCc-eeEEEE
Confidence 7999999999999998764 55555664 237899999999999998 999999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCC----
Q 003316 387 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV---- 461 (831)
Q Consensus 387 ~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~---- 461 (831)
|||+++++..+++...+ -+|++.+|+++.+++..+|+++.||||...+||+.+ .|| |+..++.+
T Consensus 357 ysgsi~~~~ai~nin~~---------~se~~~kl~~pfade~~~i~qlsagnialt~glk~t--atgdtivaskasa~aa 425 (753)
T KOG0464|consen 357 YSGSIHNNLAIFNINGM---------CSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHT--ATGDTIVASKASAEAA 425 (753)
T ss_pred ecccccCceeeeecccc---------cccchHhhhccchhhhhhhhhcccccEEEEecceee--ccCCeEEecchhHHHH
Confidence 99999999999965322 137999999999999999999999999999999997 688 77655321
Q ss_pred ------------------CccccccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecc
Q 003316 462 ------------------DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAG 522 (831)
Q Consensus 462 ------------------~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~G 522 (831)
+...+.++..| .|||+|.|||.+....+.+..||+.|.+||||++++.| +|||+++.|||
T Consensus 426 ~qk~~~egekk~~q~~daerll~agie~p-d~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~~g 504 (753)
T KOG0464|consen 426 AQKAAGEGEKKHLQNKDAERLLFAGIEIP-DAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCGMG 504 (753)
T ss_pred HHHhhccchhhccCCccccceeeecccCC-CceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEeccc
Confidence 12335567765 99999999999999999999999999999999999999 99999999999
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCceEeEEeeeecccceeEeee---cCCCeeEEEE--EEEeCChhhHHHHHcCCCCC
Q 003316 523 ELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSK---SPNKHNRLYM--EARPLEEGLAEAIDDGRIGP 597 (831)
Q Consensus 523 ElHLei~~~rL~~~f~~~v~v~~~~p~V~yrETi~~~~~~~~~~~---~~~~~~~~~~--~~ePl~~~~~~~i~~g~~~~ 597 (831)
|||+|++.+||+++| ++++-+|+.+|+|||+|.+....+.... +..+| -.++ ++.|.+. +..++.
T Consensus 505 elhie~ihdrikrey--~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~-~~~velear~~~t-------qa~ip~ 574 (753)
T KOG0464|consen 505 ELHIEAIHDRIKREY--GLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKH-LEFVELEARLEET-------QAHIPF 574 (753)
T ss_pred hhhHHHHHHHHHhhc--CchheehhHHHHHHHHHHHHhhhhhhhhcccccccc-ceEEEEEeeeccc-------cccccc
Confidence 999999999999999 9999999999999999988654321111 11122 1122 2222221 111110
Q ss_pred CCChhHHHHHhhhhcCCchhccceEEEeccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEE
Q 003316 598 RDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEV 677 (831)
Q Consensus 598 ~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l 677 (831)
++|-.--|+.. | ...+.--+.+|++|...||.+|||+|+|+++|+++|
T Consensus 575 ----------------------kkiefe~~es~--n--------~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl 622 (753)
T KOG0464|consen 575 ----------------------KKIEFELAESA--N--------EGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITL 622 (753)
T ss_pred ----------------------eeEEeeccccc--c--------chhhhhHHHHHHhhHHHHHhcCCccCCchhheeEee
Confidence 01111011100 0 112233368999999999999999999999999999
Q ss_pred EeecccccccccCCCchHHHHHHHHHHHHHhcCCeeeecEEEEEEEecC-cccccHHHHhhhccceEeeeeccCCCCcEE
Q 003316 678 CDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPE-QALGGIYSVLNQKRGHVFEEMQRPGTPLYN 756 (831)
Q Consensus 678 ~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p~LlEPi~~~eI~~p~-~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~ 756 (831)
..+.+|..... +..+..++++|+.+|+++|.-.|+||+|+++|.+.. +++..|+.||.+|||++.+.+..+.+....
T Consensus 623 ~~~~i~~gk~n--~alisac~qkcvqealkkad~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirr 700 (753)
T KOG0464|consen 623 HECIIHGGKIN--PALISACAQKCVQEALKKADKQLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRR 700 (753)
T ss_pred EEEEecCCcCC--HHHHHHHHHHHHHHHHhhhhHHHhhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchhe
Confidence 99999964322 334667999999999999999999999999999965 899999999999999999988877666678
Q ss_pred EEEEechhhhcCchHHHhhhCCCCceeEEEecceeecCCC
Q 003316 757 IKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSD 796 (831)
Q Consensus 757 I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d 796 (831)
|.|.+|++|..||++.||++|+|.|.|.++|++|+.|...
T Consensus 701 i~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqamn~~ 740 (753)
T KOG0464|consen 701 ICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAMNEH 740 (753)
T ss_pred eeEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhcChH
Confidence 9999999999999999999999999999999999999764
No 16
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=2.4e-75 Score=678.20 Aligned_cols=452 Identities=26% Similarity=0.476 Sum_probs=380.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
||||+|+||+|||||||+++|++.+|.+.+......+++|+.++|++||||+.++.+++.|. ++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~----------------~~ 64 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN----------------GT 64 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC----------------CE
Confidence 69999999999999999999999999987743333478999999999999999999999996 89
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHHHHH
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 166 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~~~l 166 (831)
++||||||||.||..++.++++.+|+||||||+.+ +...+.|+++|+||||+. +++++++...+
T Consensus 65 kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~----~a~~~~v~~ei 140 (594)
T TIGR01394 65 KINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP----SARPDEVVDEV 140 (594)
T ss_pred EEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCC----CcCHHHHHHHH
Confidence 99999999999999999999999999999999975 334466778899999998 77766666555
Q ss_pred HHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCCcee
Q 003316 167 QKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKWT 246 (831)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~~~~ 246 (831)
.+.+..+.. .++. ..-++.++|+..||++.-. ..
T Consensus 141 ~~l~~~~g~-----~~e~--------l~~pvl~~SA~~g~~~~~~---------------------------~~------ 174 (594)
T TIGR01394 141 FDLFAELGA-----DDEQ--------LDFPIVYASGRAGWASLDL---------------------------DD------ 174 (594)
T ss_pred HHHHHhhcc-----cccc--------ccCcEEechhhcCcccccC---------------------------cc------
Confidence 555443211 0000 0113555666655543100 00
Q ss_pred ecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHHHHHHh
Q 003316 247 SRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMIF 326 (831)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~I~~ 326 (831)
. . . .+.+||+++++
T Consensus 175 -----------------------------~-----------~--~------------------------gi~~Lld~Iv~ 188 (594)
T TIGR01394 175 -----------------------------P-----------S--D------------------------NMAPLFDAIVR 188 (594)
T ss_pred -----------------------------c-----------c--c------------------------CHHHHHHHHHH
Confidence 0 0 0 12578999999
Q ss_pred cCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCC
Q 003316 327 HLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVP 406 (831)
Q Consensus 327 ~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~ 406 (831)
++|+|. .++++||+++|||+..+++.|+ ++++||+||+|++||.|++...+
T Consensus 189 ~lP~P~-------------------------~~~~~pl~~~V~~i~~d~~~Gr-v~~gRV~sG~lk~G~~V~~~~~~--- 239 (594)
T TIGR01394 189 HVPAPK-------------------------GDLDEPLQMLVTNLDYDEYLGR-IAIGRVHRGTVKKGQQVALMKRD--- 239 (594)
T ss_pred hCCCCC-------------------------CCCCCCEEEEEEEEEeeCCCce-EEEEEEEeCEEccCCEEEEecCC---
Confidence 999993 1356899999999999999997 99999999999999999976431
Q ss_pred CCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccccccCCceEEEEEEeCC
Q 003316 407 GEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKV 485 (831)
Q Consensus 407 ~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~ 485 (831)
+. ...++|++|+.++|.+..++++|.|||||++.|++++ ++| |||+... +.+++++.++ +|+++++++|.+
T Consensus 240 ~~---~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i--~~Gdtl~~~~~--~~~l~~~~~~-~P~~~~~~~~~~ 311 (594)
T TIGR01394 240 GT---IENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDI--NIGETIADPEV--PEALPTITVD-EPTLSMTFSVND 311 (594)
T ss_pred Cc---eeEEEEEEEEEccCCCceECCEECCCCEEEEeCCccc--CCCCEEeCCCc--cccCCCCCCC-CCeEEEEEEecC
Confidence 11 1237999999999999999999999999999999987 788 9999887 7778888886 999999999975
Q ss_pred C---CCHhH------HHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEcCceEeEEee
Q 003316 486 A---SDLPK------LVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 555 (831)
Q Consensus 486 ~---~d~~k------L~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrET 555 (831)
. .+..| |.++|.++.++||+|+|+.+ +++|++|+|||||||+|++++|+++ |+++.+++|+|+|||
T Consensus 312 ~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~V~yre- 387 (594)
T TIGR01394 312 SPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE---GFELQVGRPQVIYKE- 387 (594)
T ss_pred CCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc---CceEEEeCCEEEEEe-
Confidence 5 44444 99999999999999999987 8999999999999999999999986 899999999999998
Q ss_pred eecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCceE
Q 003316 556 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMV 635 (831)
Q Consensus 556 i~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n~~ 635 (831)
|.
T Consensus 388 i~------------------------------------------------------------------------------ 389 (594)
T TIGR01394 388 ID------------------------------------------------------------------------------ 389 (594)
T ss_pred CC------------------------------------------------------------------------------
Confidence 30
Q ss_pred EeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCeeee
Q 003316 636 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLE 715 (831)
Q Consensus 636 ~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p~LlE 715 (831)
| .|||
T Consensus 390 -----g----------------------------------------------------------------------~llE 394 (594)
T TIGR01394 390 -----G----------------------------------------------------------------------KKLE 394 (594)
T ss_pred -----C----------------------------------------------------------------------eEEC
Confidence 0 5799
Q ss_pred cEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEecceeecCC
Q 003316 716 PVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSS 795 (831)
Q Consensus 716 Pi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~ 795 (831)
|||+++|.||++|+|+|+++|++|||+|+++++.++ +++.|+|.+|+++++||.++|||+|+|+|+|++.|+||+++|+
T Consensus 395 Pi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~-~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~ 473 (594)
T TIGR01394 395 PIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGN-GRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKG 473 (594)
T ss_pred CEEEEEEEechHHHHHHHHHHHHhCCEEeccEECCC-CEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCC
Confidence 999999999999999999999999999999998543 5889999999999999999999999999999999999999998
Q ss_pred CC
Q 003316 796 DP 797 (831)
Q Consensus 796 d~ 797 (831)
+.
T Consensus 474 ~i 475 (594)
T TIGR01394 474 EI 475 (594)
T ss_pred cC
Confidence 74
No 17
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1.2e-73 Score=662.23 Aligned_cols=453 Identities=27% Similarity=0.458 Sum_probs=380.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
++||||+|+||+|||||||+++|++.+|.+.+......+++|+.++|++||+|+.++.+++.|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~---------------- 66 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN---------------- 66 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC----------------
Confidence 5799999999999999999999999999887642223489999999999999999999999985
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 164 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~~ 164 (831)
++++||||||||.+|..++.++++.+|++|+|||+.+ +...+.|+++|+||+|+. +++++++.+
T Consensus 67 ~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~----~a~~~~vl~ 142 (607)
T PRK10218 67 DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP----GARPDWVVD 142 (607)
T ss_pred CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC----CCchhHHHH
Confidence 8999999999999999999999999999999999986 344567778899999999 888777666
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCCc
Q 003316 165 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 244 (831)
Q Consensus 165 ~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~~ 244 (831)
.+.+.+..++..- ....-+|.++|+..||+-. +..
T Consensus 143 ei~~l~~~l~~~~-------------~~~~~PVi~~SA~~G~~~~--------------~~~------------------ 177 (607)
T PRK10218 143 QVFDLFVNLDATD-------------EQLDFPIVYASALNGIAGL--------------DHE------------------ 177 (607)
T ss_pred HHHHHHhccCccc-------------cccCCCEEEeEhhcCcccC--------------Ccc------------------
Confidence 6665543321100 0011245666766555210 000
Q ss_pred eeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHHHHH
Q 003316 245 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 324 (831)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~I 324 (831)
+ ..+ .+.+|||+|
T Consensus 178 -----------------------------------~----~~~----------------------------~i~~Lld~I 190 (607)
T PRK10218 178 -----------------------------------D----MAE----------------------------DMTPLYQAI 190 (607)
T ss_pred -----------------------------------c----ccc----------------------------chHHHHHHH
Confidence 0 000 125789999
Q ss_pred HhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003316 325 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 404 (831)
Q Consensus 325 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~ 404 (831)
++++|+|. +++++||.++|||+..+++.|+ ++++|||||+|++||.|++...+
T Consensus 191 i~~iP~P~-------------------------~~~~~Pl~~~V~k~~~d~~~G~-i~~gRV~sG~lk~Gd~v~~~~~~- 243 (607)
T PRK10218 191 VDHVPAPD-------------------------VDLDGPFQMQISQLDYNSYVGV-IGIGRIKRGKVKPNQQVTIIDSE- 243 (607)
T ss_pred HHhCCCCC-------------------------CCCCCCeEEEEEeeEecCCCcE-EEEEEEEeCcCcCCCEEEEecCC-
Confidence 99999993 2457899999999999999887 99999999999999999975321
Q ss_pred CCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccccccCCceEEEEEEe
Q 003316 405 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 483 (831)
Q Consensus 405 ~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep 483 (831)
+. ...+||++||.++|.+..++++|.|||||+++|++++ .+| |||+... +.+++.+.++ +|++++++.|
T Consensus 244 --~~---~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GdTl~~~~~--~~~l~~~~~~-~P~~~~~~~~ 313 (607)
T PRK10218 244 --GK---TRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGEL--NISDTVCDTQN--VEALPALSVD-EPTVSMFFCV 313 (607)
T ss_pred --Cc---EeeEEEEEEEEEecCCceECCEEcCCCEEEEECcccc--ccCcEEecCCC--cccCCCCCCC-CCeEEEEEEe
Confidence 11 1237999999999999999999999999999999997 788 9998876 6777888886 9999999999
Q ss_pred CC---CCCHhHHHH---HHHhHhc---cCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEcCceEeEE
Q 003316 484 KV---ASDLPKLVE---GLKRLAK---SDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 553 (831)
Q Consensus 484 ~~---~~d~~kL~~---aL~~L~~---eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yr 553 (831)
.+ ..|+.|+.. +|++|.+ +||+|+|+.+ +++|++|+|+|||||+|+++||+++ |+++.+++|+|+||
T Consensus 314 ~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~V~yr 390 (607)
T PRK10218 314 NTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE---GFELAVSRPKVIFR 390 (607)
T ss_pred CCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC---CceEEEeCCEEEEE
Confidence 99 889999855 5555555 9999999988 8999999999999999999999997 89999999999999
Q ss_pred eeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCc
Q 003316 554 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPN 633 (831)
Q Consensus 554 ETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n 633 (831)
|| + |
T Consensus 391 et--~------------------------------------------------------------------------g-- 394 (607)
T PRK10218 391 EI--D------------------------------------------------------------------------G-- 394 (607)
T ss_pred EE--C------------------------------------------------------------------------C--
Confidence 97 1 0
Q ss_pred eEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCee
Q 003316 634 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 713 (831)
Q Consensus 634 ~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p~L 713 (831)
. .
T Consensus 395 --------~----------------------------------------------------------------------k 396 (607)
T PRK10218 395 --------R----------------------------------------------------------------------K 396 (607)
T ss_pred --------E----------------------------------------------------------------------E
Confidence 0 0
Q ss_pred eecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEecceeec
Q 003316 714 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMM 793 (831)
Q Consensus 714 lEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 793 (831)
||||++++|.||++|+|+|+++|++|||+|++++..++ ++..|+|.+|+++++||.++|||+|+|+|+|++.|+||+++
T Consensus 397 lEPi~~v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~~-~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~ 475 (607)
T PRK10218 397 QEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGK-GRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDV 475 (607)
T ss_pred eCCeEEEEEEechhhHHHHHHHHHhcCCEEeccEECCC-CEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCC
Confidence 69999999999999999999999999999999997543 68999999999999999999999999999999999999999
Q ss_pred C-CC
Q 003316 794 S-SD 796 (831)
Q Consensus 794 ~-~d 796 (831)
| |+
T Consensus 476 ~~g~ 479 (607)
T PRK10218 476 RPGE 479 (607)
T ss_pred CCCC
Confidence 9 55
No 18
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.8e-72 Score=656.72 Aligned_cols=476 Identities=27% Similarity=0.445 Sum_probs=379.3
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccccc
Q 003316 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (831)
Q Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (831)
...++||||+|+||+|||||||+++|++.+|.+.+...+ .+++|+.++|++||+|+.++.+++.|.. .
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~-~~~lD~~~~ErerGiTi~~~~v~~~~~~-----------~ 69 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMK-AQVLDSMDLERERGITIKAQAVRLNYKA-----------K 69 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccc-cccccCchHHhhcCCcccccEEEEEEEc-----------c
Confidence 345789999999999999999999999999999875444 5799999999999999999999999851 1
Q ss_pred CCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHH
Q 003316 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEE 161 (831)
Q Consensus 94 ~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~ 161 (831)
++..+.+||||||||.||..++.++++.+|++|+|||+.+ +...+.|.++|+||+|+. +++.++
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~----~a~~~~ 145 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLP----AADPER 145 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC----cccHHH
Confidence 2357899999999999999999999999999999999976 222345656799999998 665433
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcC
Q 003316 162 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 241 (831)
Q Consensus 162 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~ 241 (831)
+.+.+.+ .+.. .+ ..+...|+..|
T Consensus 146 v~~ei~~-------~lg~-----------~~--~~vi~iSAktG------------------------------------ 169 (600)
T PRK05433 146 VKQEIED-------VIGI-----------DA--SDAVLVSAKTG------------------------------------ 169 (600)
T ss_pred HHHHHHH-------HhCC-----------Cc--ceEEEEecCCC------------------------------------
Confidence 3222221 1100 00 01111122100
Q ss_pred CCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHH
Q 003316 242 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 321 (831)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 321 (831)
. .+..||
T Consensus 170 -------------------------------------------------~------------------------GI~~Ll 176 (600)
T PRK05433 170 -------------------------------------------------I------------------------GIEEVL 176 (600)
T ss_pred -------------------------------------------------C------------------------CHHHHH
Confidence 0 024678
Q ss_pred HHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcC
Q 003316 322 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 401 (831)
Q Consensus 322 d~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~ 401 (831)
+++++++|+|.. ++++|+.|+|||++.+++.|. ++++||++|+|++||.|+++.
T Consensus 177 ~~I~~~lp~P~~-------------------------~~~~pl~~~Vfd~~~d~~~G~-v~~~rV~sG~Lk~Gd~i~~~~ 230 (600)
T PRK05433 177 EAIVERIPPPKG-------------------------DPDAPLKALIFDSWYDNYRGV-VVLVRVVDGTLKKGDKIKMMS 230 (600)
T ss_pred HHHHHhCccccC-------------------------CCCCCceEEEEEEEecCCCce-EEEEEEEcCEEecCCEEEEec
Confidence 888899999831 356899999999999999887 999999999999999999754
Q ss_pred CCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe-cc---ccccccce-eeecCCCCCccccccccccCCce
Q 003316 402 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQYITKNA-TLTNEKEVDAHPIRAMKFSVSPV 476 (831)
Q Consensus 402 ~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~-gl---~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv 476 (831)
. +.. ++|.+|+.+++ +..+++++.||||+++. |+ +++ ++| ||++.......+++++.++ +|+
T Consensus 231 ~----~~~-----~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~--~~Gdtl~~~~~~~~~~l~~~~~~-~P~ 297 (600)
T PRK05433 231 T----GKE-----YEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDA--RVGDTITLAKNPAEEPLPGFKEV-KPM 297 (600)
T ss_pred C----Cce-----EEEEEeeccCC-CceECcEEcCCCEEEEeccccccccc--CCCCEEECCCCccccCCCCCCCC-CcE
Confidence 2 322 79999996665 88999999999999886 44 444 788 9988765111467788776 999
Q ss_pred EEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCCcEEEEe-----cchHHHHHHHHHHHhhcCCCceEEEcCceEe
Q 003316 477 VRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVS 551 (831)
Q Consensus 477 ~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g-----~GElHLei~~~rL~~~f~~~v~v~~~~p~V~ 551 (831)
++++|+|.+.+|.++|.+||++|.+|||||.++ .+|+|.++.| ||+|||||+.+||+++| ++++.+++|+|+
T Consensus 298 v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~--~~~v~~~~P~V~ 374 (600)
T PRK05433 298 VFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE-PETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSVV 374 (600)
T ss_pred EEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE-ecCCcceecceEeecHHHHHHHHHHHHHHHhh--CceEEEecCEEE
Confidence 999999999999999999999999999999997 6899999999 99999999999999999 999999999999
Q ss_pred EEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCC
Q 003316 552 FRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIG 631 (831)
Q Consensus 552 yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g 631 (831)
||||+.+.. . +.++ .
T Consensus 375 Yreti~~g~-----------~----~~~~---------------------------------------------~----- 389 (600)
T PRK05433 375 YEVTLTDGE-----------V----IEVD---------------------------------------------N----- 389 (600)
T ss_pred EEEEEeCCc-----------E----EEEE---------------------------------------------C-----
Confidence 999987521 0 0000 0
Q ss_pred CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCC
Q 003316 632 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKP 711 (831)
Q Consensus 632 ~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p 711 (831)
| .|+| |+++.+
T Consensus 390 --------------------------------p-~~~p---------------ds~~~~--------------------- 400 (600)
T PRK05433 390 --------------------------------P-SKLP---------------DPGKIE--------------------- 400 (600)
T ss_pred --------------------------------c-ccCC---------------Cccccc---------------------
Confidence 1 1222 333221
Q ss_pred eeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhh-cCchHHHhhhCCCCceeEEEecce
Q 003316 712 RLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHW 790 (831)
Q Consensus 712 ~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y 790 (831)
.||||||+++|.+|++|+|+||+++++|||++++++..+ ++..|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||
T Consensus 401 ~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~--~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y 478 (600)
T PRK05433 401 EIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLG--NRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGY 478 (600)
T ss_pred eEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecC--CeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCc
Confidence 899999999999999999999999999999999999865 47899999999999 999999999999999999999999
Q ss_pred eec---------CCCCCCC----------ChhHHHHHHHHH
Q 003316 791 DMM---------SSDPLEP----------GSQASQLVLDIR 812 (831)
Q Consensus 791 ~~v---------~~d~~~~----------~~~~~~~~~~~r 812 (831)
++. .++|.|. .+.+++++.+++
T Consensus 479 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 519 (600)
T PRK05433 479 RESDLVKLDILINGEPVDALSFIVHRDKAYERGRALVEKLK 519 (600)
T ss_pred ccccEEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHH
Confidence 985 4555542 345677766644
No 19
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=2.1e-71 Score=647.06 Aligned_cols=474 Identities=27% Similarity=0.439 Sum_probs=376.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+||||+|+||+|||||||+++|++.+|.+++...+ .+++|+.++|++||+|+.++.+++.|.. .++.
T Consensus 1 ~~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~-~~~~D~~~~ErerGiTi~~~~v~~~~~~-----------~~g~ 68 (595)
T TIGR01393 1 KNIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMR-EQVLDSMDLERERGITIKAQAVRLNYKA-----------KDGE 68 (595)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHcCCCcccccc-ccccCCChHHHhcCCCeeeeEEEEEEEc-----------CCCC
Confidence 369999999999999999999999999999875444 5789999999999999999999998851 1234
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 164 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~~ 164 (831)
.+.+||||||||.||..++.++++.||++|+|+|+++ +...+.|.++|+||+|+. +.+.++..+
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~----~~~~~~~~~ 144 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLP----SADPERVKK 144 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCC----ccCHHHHHH
Confidence 5899999999999999999999999999999999986 223345556799999987 665433322
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCCc
Q 003316 165 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 244 (831)
Q Consensus 165 ~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~~ 244 (831)
.+.+ .+.. .+ ..+...|+..|
T Consensus 145 el~~-------~lg~-----------~~--~~vi~vSAktG--------------------------------------- 165 (595)
T TIGR01393 145 EIEE-------VIGL-----------DA--SEAILASAKTG--------------------------------------- 165 (595)
T ss_pred HHHH-------HhCC-----------Cc--ceEEEeeccCC---------------------------------------
Confidence 2211 1100 00 00111111000
Q ss_pred eeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHHHHH
Q 003316 245 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 324 (831)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~I 324 (831)
. .++.||+.+
T Consensus 166 ----------------------------------------------~------------------------GI~~Lle~I 175 (595)
T TIGR01393 166 ----------------------------------------------I------------------------GIEEILEAI 175 (595)
T ss_pred ----------------------------------------------C------------------------CHHHHHHHH
Confidence 0 024678888
Q ss_pred HhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003316 325 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 404 (831)
Q Consensus 325 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~ 404 (831)
.+++|+|.. ++++|+.++|||++.+++.|. ++++||++|+|++||.|+++..
T Consensus 176 ~~~lp~p~~-------------------------~~~~pl~~~V~~~~~d~~~G~-v~~~rV~sG~lk~Gd~v~~~~~-- 227 (595)
T TIGR01393 176 VKRVPPPKG-------------------------DPDAPLKALIFDSHYDNYRGV-VALVRVFEGTIKPGDKIRFMST-- 227 (595)
T ss_pred HHhCCCCCC-------------------------CCCCCeEEEEEEEEEeCCCcE-EEEEEEECCEEecCCEEEEecC--
Confidence 889999931 356899999999999999987 9999999999999999997542
Q ss_pred CCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe-cc---ccccccce-eeecCCCCCccccccccccCCceEEE
Q 003316 405 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRV 479 (831)
Q Consensus 405 ~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~-gl---~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~ 479 (831)
+.. ++|.+|+.+++.. .+++++.||||+++. |+ +++ ++| ||++.......+++++.++ +|++++
T Consensus 228 --~~~-----~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~--~~Gdtl~~~~~~~~~~l~~~~~~-~P~v~~ 296 (595)
T TIGR01393 228 --GKE-----YEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDV--RVGDTITHVKNPAKEPLPGFKEV-KPMVFA 296 (595)
T ss_pred --CCe-----eEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCcc--CCCCEEECCCCccccCCCCCcCC-CcEEEE
Confidence 332 7999999777665 899999999998885 44 444 788 9988765111367778876 999999
Q ss_pred EEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCCcEEEE-----ecchHHHHHHHHHHHhhcCCCceEEEcCceEeEEe
Q 003316 480 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIA-----GAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE 554 (831)
Q Consensus 480 aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~-----g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrE 554 (831)
+|+|.+..|.++|.+||++|.+|||||.++. +|+|.++. |||+|||||+++||+++| ++++.+++|+|+|||
T Consensus 297 ~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~-e~~~~l~~g~r~g~lG~lHlei~~erL~re~--~~~v~~~~P~V~Yre 373 (595)
T TIGR01393 297 GLYPIDTEDYEDLRDALEKLKLNDASLTYEP-ESSPALGFGFRCGFLGLLHMEIIQERLEREF--NLDLITTAPSVIYRV 373 (595)
T ss_pred EEEECCcccHHHHHHHHHHHhccCCeEEEEe-cCCcccccccEEeeeeHHHHHHHHHHHHHHh--CCeeEEecCEEEEEE
Confidence 9999999999999999999999999999974 78887777 499999999999999999 999999999999999
Q ss_pred eeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCce
Q 003316 555 TVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNM 634 (831)
Q Consensus 555 Ti~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n~ 634 (831)
|+.+.. .+.++
T Consensus 374 ti~~g~---------------~~~~~------------------------------------------------------ 384 (595)
T TIGR01393 374 YLTNGE---------------VIEVD------------------------------------------------------ 384 (595)
T ss_pred EecCCc---------------EEEEE------------------------------------------------------
Confidence 987421 01010
Q ss_pred EEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCeee
Q 003316 635 VVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLL 714 (831)
Q Consensus 635 ~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p~Ll 714 (831)
| | .|+|+.+. -|.||
T Consensus 385 --~--------------------------p-~~~p~~~~------------------------------------~~~ll 399 (595)
T TIGR01393 385 --N--------------------------P-SDLPDPGK------------------------------------IEHVE 399 (595)
T ss_pred --C--------------------------c-ccCCCccc------------------------------------cccee
Confidence 0 2 26665541 27899
Q ss_pred ecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhh-cCchHHHhhhCCCCceeEEEecceee-
Q 003316 715 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDM- 792 (831)
Q Consensus 715 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~- 792 (831)
||||+++|.+|++|+|+||+++++|||++++++..++ ++..|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||++
T Consensus 400 EP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~-~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 478 (595)
T TIGR01393 400 EPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDP-NRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRPS 478 (595)
T ss_pred CCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCC-CeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCcccc
Confidence 9999999999999999999999999999999997543 47899999999997 99999999999999999999999997
Q ss_pred --------cCCCCCCC----------ChhHHHHHHHHH
Q 003316 793 --------MSSDPLEP----------GSQASQLVLDIR 812 (831)
Q Consensus 793 --------v~~d~~~~----------~~~~~~~~~~~r 812 (831)
+.++|.|. .+.+++++.+++
T Consensus 479 ~~~~~~~~~n~~~~d~l~~~~~~~~~~~~~~~~~~~l~ 516 (595)
T TIGR01393 479 DLVKLDILINGEPVDALSFIVHRDKAYSRGREICEKLK 516 (595)
T ss_pred ceEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHH
Confidence 34555552 346677777644
No 20
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-65 Score=538.49 Aligned_cols=454 Identities=25% Similarity=0.437 Sum_probs=390.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
..+|||||++|+|||||||++.||..+|.......-..++||+.+.|+||||||-+..+.+.|+
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~---------------- 66 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN---------------- 66 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC----------------
Confidence 5689999999999999999999999999988753333589999999999999999999999996
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 164 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~~ 164 (831)
+++|||+|||||.||-+||++.|...|+++|+|||.+ ++..+.+||+||||+||+ ++.|+++..
T Consensus 67 ~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp----~Arp~~Vvd 142 (603)
T COG1217 67 GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRP----DARPDEVVD 142 (603)
T ss_pred CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCC----CCCHHHHHH
Confidence 8999999999999999999999999999999999999 788899999999999999 999999888
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCCc
Q 003316 165 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 244 (831)
Q Consensus 165 ~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~~ 244 (831)
..-+++-++.+--.++ .-++.++|+..||+-.-. ..
T Consensus 143 ~vfDLf~~L~A~deQL-------------dFPivYAS~~~G~a~~~~-----------------------------~~-- 178 (603)
T COG1217 143 EVFDLFVELGATDEQL-------------DFPIVYASARNGTASLDP-----------------------------ED-- 178 (603)
T ss_pred HHHHHHHHhCCChhhC-------------CCcEEEeeccCceeccCc-----------------------------cc--
Confidence 7777776655433221 116888999888754200 00
Q ss_pred eeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHHHHH
Q 003316 245 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 324 (831)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~I 324 (831)
. + .+ .++|+++|
T Consensus 179 -------~-------------------------~------------~~------------------------m~pLfe~I 190 (603)
T COG1217 179 -------E-------------------------A------------DD------------------------MAPLFETI 190 (603)
T ss_pred -------c-------------------------c------------cc------------------------hhHHHHHH
Confidence 0 0 00 15899999
Q ss_pred HhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003316 325 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 404 (831)
Q Consensus 325 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~ 404 (831)
.++.|+|. .|.++||.++|+-+..+++.|+ ++.+||++|++++|+.|.+++.+
T Consensus 191 ~~hvp~P~-------------------------~~~d~PlQ~qvt~Ldyn~y~Gr-IgigRi~~G~vk~~q~V~~i~~~- 243 (603)
T COG1217 191 LDHVPAPK-------------------------GDLDEPLQMQVTQLDYNSYVGR-IGIGRIFRGTVKPNQQVALIKSD- 243 (603)
T ss_pred HHhCCCCC-------------------------CCCCCCeEEEEEeeccccccce-eEEEEEecCcccCCCeEEEEcCC-
Confidence 99999993 2567999999999999999997 99999999999999999998643
Q ss_pred CCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccccccCCceEEEEEEe
Q 003316 405 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 483 (831)
Q Consensus 405 ~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep 483 (831)
+.. ...||++++-+.|-++.++++|.||||+||+|+++. ..| |+|++.. +.+++.+..- +|.+++..-.
T Consensus 244 --g~~---~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~--~igdTi~d~~~--~~aLp~l~iD-ePTlsMtf~v 313 (603)
T COG1217 244 --GTT---ENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI--NIGDTICDPDN--PEALPALSVD-EPTLSMTFSV 313 (603)
T ss_pred --CcE---EeeEEEeeeeccceeeeecccccccCEEEEcCcccc--cccccccCCCC--ccCCCCcccC-CCceEEEEEe
Confidence 222 247999999999999999999999999999999997 577 9999988 7777777775 8888887754
Q ss_pred CC---------CCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEcCceEeEE
Q 003316 484 KV---------ASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 553 (831)
Q Consensus 484 ~~---------~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yr 553 (831)
.+ .-...++.+.|.+-.+.+-+|+|+.- +-..+.++|-|||||-|+++.+||+ |.|+.+|.|+|.||
T Consensus 314 N~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE---GfEl~VsrP~Vi~k 390 (603)
T COG1217 314 NDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE---GFELQVSRPEVIIK 390 (603)
T ss_pred cCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc---ceEEEecCceEEEE
Confidence 42 23456799999999999999999865 5689999999999999999999996 89999999999999
Q ss_pred eeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCc
Q 003316 554 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPN 633 (831)
Q Consensus 554 ETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n 633 (831)
| |.+
T Consensus 391 e-idG--------------------------------------------------------------------------- 394 (603)
T COG1217 391 E-IDG--------------------------------------------------------------------------- 394 (603)
T ss_pred e-cCC---------------------------------------------------------------------------
Confidence 8 211
Q ss_pred eEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCee
Q 003316 634 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 713 (831)
Q Consensus 634 ~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p~L 713 (831)
..
T Consensus 395 ------------------------------------------------------------------------------~~ 396 (603)
T COG1217 395 ------------------------------------------------------------------------------VK 396 (603)
T ss_pred ------------------------------------------------------------------------------cC
Confidence 12
Q ss_pred eecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEecceeec
Q 003316 714 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMM 793 (831)
Q Consensus 714 lEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 793 (831)
+||+-.+.|.||+++.|.|+..|..|+|...++.+.+ .++..+...+|.+-++||.+++-++|+|.|.....|+||+++
T Consensus 397 ~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g-~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~ 475 (603)
T COG1217 397 CEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDG-KGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPV 475 (603)
T ss_pred cCcceeEEecCchhhhhHHHHHHhhhhHhHhhcccCC-CCeEEEEEEccCcceeccchheeeccccceeeeecccccccc
Confidence 5788889999999999999999999999999999864 479999999999999999999999999999999999999999
Q ss_pred CCCC
Q 003316 794 SSDP 797 (831)
Q Consensus 794 ~~d~ 797 (831)
.++.
T Consensus 476 ~g~i 479 (603)
T COG1217 476 KGEI 479 (603)
T ss_pred cccc
Confidence 8854
No 21
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=5e-64 Score=576.58 Aligned_cols=426 Identities=23% Similarity=0.313 Sum_probs=328.4
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc------CCceEEecCchhhheeceeeeeceeEEEEeechhhh
Q 003316 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV------AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 86 (831)
Q Consensus 13 ~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~------~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~ 86 (831)
+....++|||+|+||+|||||||+++|++.+|.+++.. .|...++|+++.|++||+|+.++..++.|.
T Consensus 4 ~~~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~------ 77 (526)
T PRK00741 4 AQEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR------ 77 (526)
T ss_pred cchhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC------
Confidence 45557899999999999999999999999999987621 122346899999999999999999999985
Q ss_pred hccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCCcEEEEecCcchhhc
Q 003316 87 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIRPVLTVNKMDRCFLE 154 (831)
Q Consensus 87 ~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~~ii~iNKiD~~~~~ 154 (831)
++++|+||||||.||..++.++++.+|+||+|||+.+ .. ..+.|.++|+||+|+.
T Consensus 78 ----------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~--- 144 (526)
T PRK00741 78 ----------DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD--- 144 (526)
T ss_pred ----------CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc---
Confidence 8899999999999999999999999999999999976 12 2345556699999999
Q ss_pred cCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhc
Q 003316 155 LQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWG 234 (831)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~ 234 (831)
++++.++.+.+++.+. . .+...++|++.+...-+. +|+.....+.|.
T Consensus 145 -~a~~~~~l~~i~~~l~-------~-----------~~~p~~~Pig~~~~f~Gv--------------vdl~~~~~~~~~ 191 (526)
T PRK00741 145 -GREPLELLDEIEEVLG-------I-----------ACAPITWPIGMGKRFKGV--------------YDLYNDEVELYQ 191 (526)
T ss_pred -ccCHHHHHHHHHHHhC-------C-----------CCeeEEeccccCCceeEE--------------EEeecceeeecc
Confidence 8886555544443322 0 112236777665211111 333333333331
Q ss_pred ccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHh--------HHHHH
Q 003316 235 ENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELM--------GKALM 306 (831)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~--------~~~l~ 306 (831)
...+ +. .++.+.+++.|+++|++||++ ..+ +|+... .....
T Consensus 192 -----~~~~--------~~--------------~~~~e~~~~~dd~lle~~l~~--~~~--~~l~~~lel~~~~~~~~~~ 240 (526)
T PRK00741 192 -----PGEG--------HT--------------IQEVEIIKGLDNPELDELLGE--DLA--EQLREELELVQGASNEFDL 240 (526)
T ss_pred -----cCCC--------Cc--------------ceeeeeccCCCHHHHHHHhcc--cHH--HHHHHHHHhhhhcccchhH
Confidence 0000 00 022345667788889988876 222 222100 11113
Q ss_pred HHHH-hccccc----------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccC-CCCCeEEEEEEeec-
Q 003316 307 KRVM-QTWLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD-PEGPLMLYVSKMIP- 373 (831)
Q Consensus 307 ~~i~-~~~~P~----------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~pl~a~VfK~~~- 373 (831)
+++. ++++|+ +++|||+|++|+|+|.++... ...++ .+.|++|+|||+.+
T Consensus 241 ~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~-----------------~~~~~~~~~~~~~~VFK~~~~ 303 (526)
T PRK00741 241 EAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTD-----------------EREVEPTEEKFSGFVFKIQAN 303 (526)
T ss_pred HHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCccccc-----------------ceeecCCCCceEEEEEEEEec
Confidence 3333 688897 799999999999999754311 00112 24579999999984
Q ss_pred --CCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEecccccccc
Q 003316 374 --ASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITK 451 (831)
Q Consensus 374 --~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~ 451 (831)
++++|+ ++|+|||||+|++|+.|++ .+++++ +|+++++.++|.+..+|++|.|||||++.|++++ +
T Consensus 304 m~~~~~gr-lafvRV~sG~l~~g~~v~~----~~~~k~-----~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~--~ 371 (526)
T PRK00741 304 MDPKHRDR-IAFVRVCSGKFEKGMKVRH----VRTGKD-----VRISNALTFMAQDREHVEEAYAGDIIGLHNHGTI--Q 371 (526)
T ss_pred CCCCcCce-EEEEEEeccEECCCCEEEe----ccCCce-----EEecceEEEecCCceECceeCCCCEEEEECCCCC--c
Confidence 457776 9999999999999999994 444544 7999999999999999999999999999999987 8
Q ss_pred ce-eeecCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHH
Q 003316 452 NA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEIC 529 (831)
Q Consensus 452 tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~ 529 (831)
+| ||++.+ +..++++.++ +|+++++|+|+++.|.+||.+||++|.+||| +++..+ +|||++|+|||||||||+
T Consensus 372 ~GDTL~~~~---~~~~~~i~~~-~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~ 446 (526)
T PRK00741 372 IGDTFTQGE---KLKFTGIPNF-APELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVV 446 (526)
T ss_pred cCCCccCCC---ccccCCCCCC-CccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHH
Confidence 99 998754 4567788886 9999999999999999999999999999995 999988 999999999999999999
Q ss_pred HHHHHhhcCCCceEEEcCceEeEEeeee
Q 003316 530 LKDLQDDFMGGAEIIKSDPVVSFRETVL 557 (831)
Q Consensus 530 ~~rL~~~f~~~v~v~~~~p~V~yrETi~ 557 (831)
++||+++| ||++.+++|+|++-.-|.
T Consensus 447 ~~RL~~ey--~v~v~~~~~~v~~~rw~~ 472 (526)
T PRK00741 447 AHRLKNEY--NVEAIYEPVGVATARWVE 472 (526)
T ss_pred HHHHHHHh--CCEEEEecCCccEEEEEe
Confidence 99999999 999999999999887664
No 22
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=3.1e-62 Score=561.93 Aligned_cols=424 Identities=21% Similarity=0.301 Sum_probs=314.6
Q ss_pred HhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc----CC--ceEEecCchhhheeceeeeeceeEEEEeechh
Q 003316 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----AG--DVRMTDTRQDEAERGITIKSTGISLYYEMTDA 84 (831)
Q Consensus 11 ~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----~g--~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~ 84 (831)
+++....++|||+|+||+|||||||+++|++.+|.|.+.. .| ..+++|+.++|++||+|+.++..++.|.
T Consensus 3 ~~~~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~---- 78 (527)
T TIGR00503 3 DLLKEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR---- 78 (527)
T ss_pred hhhhhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC----
Confidence 3566678899999999999999999999999999987620 11 1267999999999999999999999985
Q ss_pred hhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcchh
Q 003316 85 ALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRCF 152 (831)
Q Consensus 85 ~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~~ 152 (831)
++++||+|||||.||..++.++++.+|+||+|||+.. .+. .+.|.++|+||+|+.
T Consensus 79 ------------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~- 145 (527)
T TIGR00503 79 ------------DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD- 145 (527)
T ss_pred ------------CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc-
Confidence 8899999999999999999999999999999999986 222 234556699999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCc--ceeEEeehhHHHHhhhhcCCChHHHHH
Q 003316 153 LELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGL--HGWAFTLTNFAKMYASKFGVDESKMME 230 (831)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~--~g~~~~~~~~a~~~~~~~~i~~~~l~~ 230 (831)
+++++++.+.+++.+.. .+...++|++.+. .|. +|......
T Consensus 146 ---~~~~~~ll~~i~~~l~~------------------~~~~~~~PIg~~~~f~gv----------------~d~l~~~~ 188 (527)
T TIGR00503 146 ---IRDPLELLDEVENELKI------------------NCAPITWPIGCGKLFKGV----------------YHLLKDET 188 (527)
T ss_pred ---CCCHHHHHHHHHHHhCC------------------CCccEEEEecCCCceeEE----------------EEcccCcc
Confidence 88866665555443321 1122356665441 111 22222222
Q ss_pred HhhcccccCcCCCc-eeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHH------HHhcCCCCCHHHHHHhHH
Q 003316 231 RLWGENFFDPATRK-WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPM------LQKLGVTMKSEEKELMGK 303 (831)
Q Consensus 231 ~lw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~------l~~~~~~l~~~el~~~~~ 303 (831)
++ |....+. ....+ .....-.| +.+.++. .+.++++ +++.+.+++. +
T Consensus 189 ~~-----y~~~~~~~~~~~~---------~~~~~~~~---~~e~~~~--~~~~~~~~~~le~~~~~~~~~~~-------~ 242 (527)
T TIGR00503 189 YL-----YQSGTGGTIQAVR---------QVKGLNNP---ALDSAVG--SDLAQQLRDELELVEGASNEFDL-------A 242 (527)
T ss_pred ee-----cCccCCCceeEee---------hhccCCCh---hhhhhhh--HHHHHHHHHHHHHHhhhccccCH-------H
Confidence 22 2211111 11100 00000000 0111111 1122222 3332223321 1
Q ss_pred HHHHHHHhccccc----------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeec
Q 003316 304 ALMKRVMQTWLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIP 373 (831)
Q Consensus 304 ~l~~~i~~~~~P~----------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~ 373 (831)
+.+ .++++|+ ++.|||+|++|+|+|.++.... ....+ .++|++|+|||+.+
T Consensus 243 ~~~---~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~---------------~~~~~-~~~~~~~~VFK~~~ 303 (527)
T TIGR00503 243 AFH---GGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDT---------------RTVEP-TEEKFSGFVFKIQA 303 (527)
T ss_pred HHh---cCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCc---------------eecCC-CCCCeeEEEEEEEe
Confidence 111 2678886 8999999999999997543110 01122 45779999999987
Q ss_pred --C-CCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccc
Q 003316 374 --A-SDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYIT 450 (831)
Q Consensus 374 --~-~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~ 450 (831)
+ +++|+ ++|+|||||+|++|++|+ |.+++++ +|+++++.++|.+.++|++|.|||||++.|++++
T Consensus 304 ~mdp~~~gr-iaf~RV~sG~l~~g~~v~----~~~~~k~-----~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~-- 371 (527)
T TIGR00503 304 NMDPKHRDR-VAFMRVVSGKYEKGMKLK----HVRTGKD-----VVISDALTFMAGDREHVEEAYAGDIIGLHNHGTI-- 371 (527)
T ss_pred ccCcccCce-EEEEEEeeeEEcCCCEEE----ecCCCCc-----EEecchhhhhcCCceEcceeCCCCEEEEECCCCc--
Confidence 6 47787 999999999999999999 4445544 7999999999999999999999999999999987
Q ss_pred cce-eeecCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHH
Q 003316 451 KNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEI 528 (831)
Q Consensus 451 ~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei 528 (831)
++| ||++. . ...++++.++ +|+++++|+|+++.|.+||.+||++|.+||| +++..+ +|+|++|+|||||||||
T Consensus 372 ~~GDtl~~~-~--~~~~~~i~~~-~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV 446 (527)
T TIGR00503 372 QIGDTFTQG-E--KIKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDV 446 (527)
T ss_pred ccCCEecCC-C--ceeecCCCCC-CcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHH
Confidence 899 99883 3 4567788876 9999999999999999999999999999998 999988 99999999999999999
Q ss_pred HHHHHHhhcCCCceEEEcCceEeE
Q 003316 529 CLKDLQDDFMGGAEIIKSDPVVSF 552 (831)
Q Consensus 529 ~~~rL~~~f~~~v~v~~~~p~V~y 552 (831)
+++||+++| ||++.+++|+|+.
T Consensus 447 ~~~RL~~ey--~v~v~~~~~~v~~ 468 (527)
T TIGR00503 447 VVYRLKEEY--NVEARYEPVNVAT 468 (527)
T ss_pred HHHHHHHHh--CCeEEEeCCCceE
Confidence 999999999 9999999999984
No 23
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-62 Score=531.20 Aligned_cols=455 Identities=30% Similarity=0.432 Sum_probs=371.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
+++||++|++|+|||||||+++||..+|.+... .+..+++|+.+.||||||||++...++.|. ++.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~-~~q~q~LDkl~vERERGITIkaQtasify~-------------~~~ 123 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNN-IGQEQVLDKLQVERERGITIKAQTASIFYK-------------DGQ 123 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCC-CchhhhhhhhhhhhhcCcEEEeeeeEEEEE-------------cCC
Confidence 789999999999999999999999999988775 566789999999999999999999999997 245
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 164 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~~ 164 (831)
.|.+||||||||+||..||.+++..||||||||||.+ ++..+..+|.|+||||++ .++++.+..
T Consensus 124 ~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp----~adpe~V~~ 199 (650)
T KOG0462|consen 124 SYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP----SADPERVEN 199 (650)
T ss_pred ceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC----CCCHHHHHH
Confidence 7999999999999999999999999999999999998 555667777799999999 999888877
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCCc
Q 003316 165 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 244 (831)
Q Consensus 165 ~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~~ 244 (831)
++.+.++.- |. .+.+.|+..||
T Consensus 200 q~~~lF~~~------------------~~--~~i~vSAK~G~-------------------------------------- 221 (650)
T KOG0462|consen 200 QLFELFDIP------------------PA--EVIYVSAKTGL-------------------------------------- 221 (650)
T ss_pred HHHHHhcCC------------------cc--ceEEEEeccCc--------------------------------------
Confidence 666554420 10 23333332221
Q ss_pred eeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHHHHH
Q 003316 245 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 324 (831)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~I 324 (831)
.+..+|++|
T Consensus 222 -----------------------------------------------------------------------~v~~lL~AI 230 (650)
T KOG0462|consen 222 -----------------------------------------------------------------------NVEELLEAI 230 (650)
T ss_pred -----------------------------------------------------------------------cHHHHHHHH
Confidence 013579999
Q ss_pred HhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003316 325 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 404 (831)
Q Consensus 325 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~ 404 (831)
++..|+|. ...++||.+++|..+.|.++|. ++++||..|.+++||.|..+.
T Consensus 231 I~rVPpP~-------------------------~~~d~plr~Lifds~yD~y~G~-I~~vrv~~G~vrkGdkV~~~~--- 281 (650)
T KOG0462|consen 231 IRRVPPPK-------------------------GIRDAPLRMLIFDSEYDEYRGV-IALVRVVDGVVRKGDKVQSAA--- 281 (650)
T ss_pred HhhCCCCC-------------------------CCCCcchHHHhhhhhhhhhcce-EEEEEEeeeeeecCCEEEEee---
Confidence 99999993 1357899999999999999997 999999999999999999653
Q ss_pred CCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEec-cccccccce-eeecCCC-CCccccccccccCCceEEEEE
Q 003316 405 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG-LDQYITKNA-TLTNEKE-VDAHPIRAMKFSVSPVVRVAV 481 (831)
Q Consensus 405 ~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~g-l~~~~~~tg-Tl~~~~~-~~~~~~~~~~~~~~Pv~~~aI 481 (831)
+++. .+.+.-.++.+..-...+++...+|+|++..| ++++ ..| |+++... +...+++.... ..|++++..
T Consensus 282 -t~~~---yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea--~IGdTi~~~~~~~~v~tl~~~~~-~~pMvFvg~ 354 (650)
T KOG0462|consen 282 -TGKS---YEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEA--QIGDTIAHKSVTKAVETLPGFEP-TKPMVFVGL 354 (650)
T ss_pred -cCcc---eEeEEeEEeccCceeeeeecccccceeEecccccccc--cccceeeecccCcccCcCCCCCC-CcceEEecc
Confidence 2322 34677777777777777777788888888777 7777 678 9987662 11344555554 499999999
Q ss_pred EeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCC----cEEEEecchHHHHHHHHHHHhhcCCCceEEEcCceEeEEeeee
Q 003316 482 QCKVASDLPKLVEGLKRLAKSDPMVVCSMEESG----EHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVL 557 (831)
Q Consensus 482 ep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etg----e~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrETi~ 557 (831)
.|.+..|...|.+++.+|..+|+++.+..+.++ -+.+++.|.|||+|..+||+++| |.++.+++|.|+||=-..
T Consensus 355 fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Ey--g~elivt~PtV~Yr~~~~ 432 (650)
T KOG0462|consen 355 FPLDGSDYETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREY--GAELIVTPPTVPYRVVYS 432 (650)
T ss_pred ccCccchhhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhc--CceeeecCCcceEEEEec
Confidence 999999999999999999999999999887444 57999999999999999999999 999999999999985322
Q ss_pred cccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCceEEe
Q 003316 558 EKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVD 637 (831)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n~~~~ 637 (831)
+.. . +.+..|. .
T Consensus 433 ~~~-----------~-------------------------------------------------~~i~np~-----~--- 444 (650)
T KOG0462|consen 433 NGD-----------E-------------------------------------------------ILISNPA-----L--- 444 (650)
T ss_pred CCc-----------e-------------------------------------------------eeecChh-----h---
Confidence 210 0 0011110 0
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCeeeecE
Q 003316 638 MCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPV 717 (831)
Q Consensus 638 ~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p~LlEPi 717 (831)
+| |..... -.|||+
T Consensus 445 ------------------------------fp---------------~~~~v~---------------------~~lEP~ 458 (650)
T KOG0462|consen 445 ------------------------------FP---------------DPSDVK---------------------EFLEPY 458 (650)
T ss_pred ------------------------------CC---------------Ccccch---------------------hhcCce
Confidence 01 111110 259999
Q ss_pred EEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcC-chHHHhhhCCCCceeEEEeccee
Q 003316 718 YLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFG-FSSTLRAATSGQAFPQCVFDHWD 791 (831)
Q Consensus 718 ~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~g-y~~~Lrs~T~G~~~~~~~f~~y~ 791 (831)
...+|.+|+||+|.|+..++.|||...++...++ +...++-++|++|+.| |-..|.|.|+|.|+|..+|++|+
T Consensus 459 v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~-nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~ 532 (650)
T KOG0462|consen 459 VEATIITPDEYVGAVIELCSERRGEQKDMTYIDG-NRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQ 532 (650)
T ss_pred EEEEEECcHHHHHHHHHHHHHhhhheecceeccC-CeEEEEEecChHHHHHHHHHHHhccccceeEEeecccccc
Confidence 9999999999999999999999999999998766 4888999999999999 99999999999999999999999
No 24
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.3e-58 Score=489.03 Aligned_cols=458 Identities=28% Similarity=0.446 Sum_probs=366.4
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccC
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (831)
..++|||.+|++|+|||||||+++|+..+|.++.+..- ..++|+++.||||||||++..+++.|.. .+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~-~Q~LDsMdiERERGITIKaq~v~l~Yk~-----------~~ 72 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR-AQVLDSMDIERERGITIKAQAVRLNYKA-----------KD 72 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHH-HHhhhhhhhHhhcCceEEeeEEEEEEEe-----------CC
Confidence 44789999999999999999999999999999876443 4689999999999999999999999973 24
Q ss_pred CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEE-EEecCcchhhccCCCHHH
Q 003316 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVL-TVNKMDRCFLELQVDGEE 161 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii-~iNKiD~~~~~~~~~~~~ 161 (831)
+..|.+||||||||+||..||.++|..|.||+|||||.. ++ ++..-|+ |+||+|++ .++++.
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-e~~LeIiPViNKIDLP----~Adper 147 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-ENNLEIIPVLNKIDLP----AADPER 147 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-HcCcEEEEeeecccCC----CCCHHH
Confidence 468999999999999999999999999999999999997 33 3444455 99999999 999888
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcC
Q 003316 162 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 241 (831)
Q Consensus 162 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~ 241 (831)
+.+++.+++.- . +. ..+..|+ +
T Consensus 148 vk~eIe~~iGi-d-----------------~~--dav~~SA--------------------------------------K 169 (603)
T COG0481 148 VKQEIEDIIGI-D-----------------AS--DAVLVSA--------------------------------------K 169 (603)
T ss_pred HHHHHHHHhCC-C-----------------cc--hheeEec--------------------------------------c
Confidence 77776665431 0 00 0011111 0
Q ss_pred CCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHH
Q 003316 242 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 321 (831)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 321 (831)
+ ++| +..+|
T Consensus 170 t---------------------------------------------G~g--------------------------I~~iL 178 (603)
T COG0481 170 T---------------------------------------------GIG--------------------------IEDVL 178 (603)
T ss_pred c---------------------------------------------CCC--------------------------HHHHH
Confidence 0 011 24689
Q ss_pred HHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcC
Q 003316 322 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 401 (831)
Q Consensus 322 d~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~ 401 (831)
++|++.+|+|. .++++||.|++|..+.|+++|- ++++||+.|++++||.+..++
T Consensus 179 e~Iv~~iP~P~-------------------------g~~~~pLkALifDS~yD~Y~GV-v~~vRi~dG~ik~gdki~~m~ 232 (603)
T COG0481 179 EAIVEKIPPPK-------------------------GDPDAPLKALIFDSWYDNYLGV-VVLVRIFDGTLKKGDKIRMMS 232 (603)
T ss_pred HHHHhhCCCCC-------------------------CCCCCcceEEEEeccccccceE-EEEEEEeeceecCCCEEEEEe
Confidence 99999999993 2578999999999999999997 999999999999999999875
Q ss_pred CCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe-cccccc-ccce-eeecCCCCCccccccccccCCceEE
Q 003316 402 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GLDQYI-TKNA-TLTNEKEVDAHPIRAMKFSVSPVVR 478 (831)
Q Consensus 402 ~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~-gl~~~~-~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~ 478 (831)
. |++ ..|.++.++.- ...+.+++.||+++-+. |+++.. ++.| |++...++...++++.+-. .|+++
T Consensus 233 t----g~~-----y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~-~P~Vf 301 (603)
T COG0481 233 T----GKE-----YEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEV-KPMVF 301 (603)
T ss_pred c----CCE-----EEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcC-CceEE
Confidence 3 333 57777777664 78889999999998653 555431 2567 7774443225677888765 99999
Q ss_pred EEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCC---C-cEEEEecchHHHHHHHHHHHhhcCCCceEEEcCceEeEEe
Q 003316 479 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEES---G-EHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE 554 (831)
Q Consensus 479 ~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~et---g-e~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrE 554 (831)
+.+.|.+..|.+.|.+||.+|...|.+|.++.+.+ | -+....+|-|||||+.+||+|+| ++++....|.|.|+=
T Consensus 302 ~GlyPid~~dye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf--~ldlI~TaPsV~Y~v 379 (603)
T COG0481 302 AGLYPVDSDDYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSVVYKV 379 (603)
T ss_pred EeecccChhHHHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhh--CcceEecCCceEEEE
Confidence 99999999999999999999999999999976522 2 56788899999999999999999 999999999999986
Q ss_pred eeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCce
Q 003316 555 TVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNM 634 (831)
Q Consensus 555 Ti~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n~ 634 (831)
..++..+. ..-.|.
T Consensus 380 ~~~~g~~~------------------------------------------------------------~i~NPs------ 393 (603)
T COG0481 380 ELTDGEEI------------------------------------------------------------EVDNPS------ 393 (603)
T ss_pred EEcCCcEE------------------------------------------------------------EecChH------
Confidence 54332100 000110
Q ss_pred EEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCeee
Q 003316 635 VVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLL 714 (831)
Q Consensus 635 ~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p~Ll 714 (831)
.+| |. .++ -.+.
T Consensus 394 --------------------------------~~P---------------~~-----~~I----------------~~i~ 405 (603)
T COG0481 394 --------------------------------DLP---------------DP-----NKI----------------EEIE 405 (603)
T ss_pred --------------------------------hCC---------------Ch-----hhh----------------heee
Confidence 011 00 000 0368
Q ss_pred ecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhh-cCchHHHhhhCCCCceeEEEecceee
Q 003316 715 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDM 792 (831)
Q Consensus 715 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~ 792 (831)
||+.++.|.+|++|+|.||...+.+||.-.+++..+ .+.+.+.-.+|++|. ++|-+.|.|.|+|.|+|..+|.+|++
T Consensus 406 EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~-~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~ 483 (603)
T COG0481 406 EPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLD-QNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRE 483 (603)
T ss_pred CceeEEEEeCcHHHHHHHHHHHHHhcCceecceEec-CceEEEEEecchHHHHHHHhHhhhccccceeeeccccccccc
Confidence 999999999999999999999999999999988764 368899999999996 69999999999999999999999986
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-50 Score=423.60 Aligned_cols=423 Identities=24% Similarity=0.358 Sum_probs=301.5
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCc--------eEEecCchhhheeceeeeeceeEEEEeechhhh
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 86 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~--------~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~ 86 (831)
...+-|+.+|+.|+|||||||++.||...|+|.. +|+ .+.+|+++.|++||||+.+++..|.|.
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~--AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~------ 79 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQE--AGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA------ 79 (528)
T ss_pred HHhhhcceeEEecCCCCcccHHHHHHHhcchhhh--cceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC------
Confidence 3456799999999999999999999999999876 453 347999999999999999999999885
Q ss_pred hccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------HhhhCCCcEE-EEecCcchhhc
Q 003316 87 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALGERIRPVL-TVNKMDRCFLE 154 (831)
Q Consensus 87 ~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~~~~~~ii-~iNKiD~~~~~ 154 (831)
++.|||+|||||.||+..+.+.|..+|.||.||||.. ..+.+..||+ |||||||.
T Consensus 80 ----------~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~--- 146 (528)
T COG4108 80 ----------DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDRE--- 146 (528)
T ss_pred ----------CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccc---
Confidence 8999999999999999999999999999999999997 3345667777 99999999
Q ss_pred cCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhc
Q 003316 155 LQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWG 234 (831)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~ 234 (831)
+-+|-|+...+.+.+. +.+.+.++|+|.+. .|...|.-.-+ . -.+
T Consensus 147 -~rdP~ELLdEiE~~L~------------------i~~~PitWPIG~gk--------~F~Gvy~l~~~----~--v~~-- 191 (528)
T COG4108 147 -GRDPLELLDEIEEELG------------------IQCAPITWPIGMGK--------DFKGVYHLYND----E--VEL-- 191 (528)
T ss_pred -cCChHHHHHHHHHHhC------------------cceecccccccCCc--------ccceeeeeccC----E--EEE--
Confidence 9998887655555433 12233478888772 33333311000 0 001
Q ss_pred ccccCcCCC--ceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhc
Q 003316 235 ENFFDPATR--KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQT 312 (831)
Q Consensus 235 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~ 312 (831)
|..... ........+ ...+...+.+-+.. ++.+.+ +-++ +.+.+-+++. .+.+ ...
T Consensus 192 ---y~~~~~~~~~~~~~~~~-~~~p~~~~~l~~~~---~~~~~e-e~EL----~~~a~~~Fd~-------~~fl---~G~ 249 (528)
T COG4108 192 ---YESGHTDQERRADIVKG-LDNPELDALLGEDL---AEQLRE-ELEL----VQGAGNEFDL-------EAFL---AGE 249 (528)
T ss_pred ---eccCCCccccccccccC-CCChhHHhhhchHH---HHHHHH-HHHH----HHhhccccCH-------HHHh---cCC
Confidence 111100 000000000 00111111111111 111110 0111 1111111111 1111 135
Q ss_pred cccc----------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCC-CCCeEEEEEEeecCCC---CC
Q 003316 313 WLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDP-EGPLMLYVSKMIPASD---KG 378 (831)
Q Consensus 313 ~~P~----------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~pl~a~VfK~~~~~~---~g 378 (831)
+.|+ ++.+||+++++.|+|..++.. .+...| +..+++||||+....+ ++
T Consensus 250 ~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~-----------------~~~v~p~e~kfsGFVFKIQANMDp~HRD 312 (528)
T COG4108 250 LTPVFFGSALGNFGVDHFLDALVDWAPSPRARQAD-----------------TREVEPTEDKFSGFVFKIQANMDPKHRD 312 (528)
T ss_pred ccceEehhhhhccCHHHHHHHHHhhCCCCCcccCC-----------------cCcccCCCCccceEEEEEEcCCCccccc
Confidence 5664 899999999999999754321 011222 2349999999987443 34
Q ss_pred ceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeec
Q 003316 379 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTN 457 (831)
Q Consensus 379 ~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~ 457 (831)
+ ++|+||.||++.+|+.+. ..++|++ .+++.-..+++++++.|++|.||||+++..-... +.| |++.
T Consensus 313 R-IAFmRv~SGkferGMkv~----h~rtGK~-----~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~--~IGDT~t~ 380 (528)
T COG4108 313 R-IAFMRVCSGKFERGMKVT----HVRTGKD-----VKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTI--QIGDTFTE 380 (528)
T ss_pred c-eeEEEeccccccCCceee----eeecCCc-----eEecchHhhhhhhhhhhhhccCCCeEeccCCCce--eecceeec
Confidence 4 999999999999999998 5566755 7999999999999999999999999999865444 677 8876
Q ss_pred CCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCCcEEEEecchHHHHHHHHHHHhhc
Q 003316 458 EKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDF 537 (831)
Q Consensus 458 ~~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f 537 (831)
.. ...+.+++.. .|-+...|..+++....+|.+||.+|.+|--.--++...++++++...|.||+||+.+||+++|
T Consensus 381 Ge---~l~f~giP~F-aPE~frrvr~kd~~K~Kql~Kgl~QL~eEGavQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY 456 (528)
T COG4108 381 GE---KLKFTGIPNF-APELFRRVRLKDPLKQKQLKKGLEQLAEEGAVQVFKPLDGNDLILGAVGQLQFEVVQARLKNEY 456 (528)
T ss_pred Cc---eeeecCCCCC-CHHHHHHHhcCChHHHHHHHHHHHHHhhcCeeEEEecCCCCCceEEeeeeeehHHHHHHHHhhh
Confidence 53 5677788776 8999999999999999999999999999987655555578999999999999999999999999
Q ss_pred CCCceEEEcCceE
Q 003316 538 MGGAEIIKSDPVV 550 (831)
Q Consensus 538 ~~~v~v~~~~p~V 550 (831)
++++.+.+..+
T Consensus 457 --~ve~~~e~~~~ 467 (528)
T COG4108 457 --NVEAVFEPVNF 467 (528)
T ss_pred --CCeEEEeeccc
Confidence 99998865433
No 26
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=100.00 E-value=3.9e-38 Score=312.09 Aligned_cols=174 Identities=47% Similarity=0.849 Sum_probs=165.7
Q ss_pred CceEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEec
Q 003316 547 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFG 626 (831)
Q Consensus 547 ~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 626 (831)
+|.|+|||||.+.+...+..+++|+|+++|++++||++++.+.|++|.++..++.+.+.+.|+.+||||..++++||+||
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~iw~fg 80 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAETPNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSIWAFG 80 (178)
T ss_pred CCcceEEeeccccCCCceeeECCCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCeEEEc
Confidence 69999999999988778889999999999999999999999999999998888899999999999999999999999999
Q ss_pred cCCCCCceEEeccc----cccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHH
Q 003316 627 PETIGPNMVVDMCK----GVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 702 (831)
Q Consensus 627 p~~~g~n~~~~~~~----g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~ 702 (831)
|++.|+|+|+|.+. +.+++++++++|++||++|+++|||||+||+||+|+|.|+.+|.|+.+++.+||++|+|+||
T Consensus 81 P~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aar~a~ 160 (178)
T cd01683 81 PDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTARRAC 160 (178)
T ss_pred CCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHHHHHH
Confidence 99999999999987 55688999999999999999999999999999999999999998888888899999999999
Q ss_pred HHHHHhcCCeeeecEEEE
Q 003316 703 YASQLTAKPRLLEPVYLV 720 (831)
Q Consensus 703 ~~al~~a~p~LlEPi~~~ 720 (831)
++|+++|+|+||||||.|
T Consensus 161 ~~a~l~a~prLLEPim~v 178 (178)
T cd01683 161 YSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHCCCEEEcceEeC
Confidence 999999999999999975
No 27
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=100.00 E-value=8.6e-38 Score=322.22 Aligned_cols=192 Identities=60% Similarity=0.983 Sum_probs=167.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
|||+|+||+|||||||+++|++.+|.+.+...|..+++|+.++|++||+|++++.+++.|...+. ...++.++.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~------~~~~~~~~~ 74 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEE------DKADGNEYL 74 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcc------cccCCCceE
Confidence 89999999999999999999999999988777888999999999999999999999999963210 012345789
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHHHHHH
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQ 167 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~~~l~ 167 (831)
+||||||||.+|..++..+++.+|+||+|||+.+ +...+.|+++|+||+|+.+.+++.+++++|.+++
T Consensus 75 i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~ 154 (222)
T cd01885 75 INLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLA 154 (222)
T ss_pred EEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHH
Confidence 9999999999999999999999999999999987 2334567788999999999999999999999999
Q ss_pred HHHHHhhhhhhhccCCC-----CCCeeeeecCceeeeccCcceeEEeehhHHHHh
Q 003316 168 KVIENANVIMATYEDPL-----LGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 217 (831)
Q Consensus 168 ~~~~~~~~~l~~~~~~~-----~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 217 (831)
++++++|.++..+..+. ...+.|+|..|||.|+|+.+||+|++++||.+|
T Consensus 155 ~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~ 209 (222)
T cd01885 155 RIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIY 209 (222)
T ss_pred HHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchH
Confidence 99999999998764321 134679999999999999999999999887666
No 28
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=3.6e-34 Score=304.56 Aligned_cols=244 Identities=27% Similarity=0.402 Sum_probs=184.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccc---cCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~---~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
||+|+||+|||||||+++|++.+|.+.+. ..| .+++|+.++|++||+|++++..++.|. +
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~-~~~~D~~~~E~~rgiti~~~~~~~~~~----------------~ 63 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGG-GATMDFMEQERERGITIQSAATTCFWK----------------D 63 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCC-ccccCCCccccCCCcCeeccEEEEEEC----------------C
Confidence 79999999999999999999999988762 122 578999999999999999999999996 8
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcchhhccCCCHHHHHHH
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRCFLELQVDGEEAYQT 165 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~~~~~~~~~~~~~~~ 165 (831)
+++||||||||.+|..++.++++.+|+||+|||+.+ .+. .+.|.++|+||+|+. +++++++.+.
T Consensus 64 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~----~a~~~~~~~~ 139 (270)
T cd01886 64 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT----GADFFRVVEQ 139 (270)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHHH
Confidence 899999999999999999999999999999999976 222 345666799999999 8876555444
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCCce
Q 003316 166 FQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKW 245 (831)
Q Consensus 166 l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~~~ 245 (831)
+++.+.. .+...++|++.....-++ +|+..+.++.|.+ ...+++
T Consensus 140 l~~~l~~------------------~~~~~~~Pisa~~~f~g~--------------vd~~~~~a~~~~~----~~~~~~ 183 (270)
T cd01886 140 IREKLGA------------------NPVPLQLPIGEEDDFRGV--------------VDLIEMKALYWDG----ELGEKI 183 (270)
T ss_pred HHHHhCC------------------CceEEEeccccCCCceEE--------------EEccccEEEeccc----CCCcee
Confidence 4443321 112225566543111011 5565555555521 111223
Q ss_pred eecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc--------
Q 003316 246 TSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA-------- 316 (831)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~-------- 316 (831)
...+. ...+.+.+.+.+.+|+|.+++.||++|++||++ .+++.+|+. ++|.+++. ++++|+
T Consensus 184 ~~~~i-----p~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~PV~~gSa~~~ 253 (270)
T cd01886 184 EETEI-----PEDLLEEAEEAREELIETLAEFDDELMEKYLEG--EEITEEEIK---AAIRKGTIANKIVPVLCGSAFKN 253 (270)
T ss_pred EEecC-----CHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHcCcEEEEEeCcCCCC
Confidence 32221 234556666778899999999999999999998 789999997 56666665 689997
Q ss_pred --HHHHHHHHHhcCCCc
Q 003316 317 --SSALLEMMIFHLPSP 331 (831)
Q Consensus 317 --~~~LLd~I~~~lPsP 331 (831)
++.|||+|++|+|||
T Consensus 254 ~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 254 KGVQPLLDAVVDYLPSP 270 (270)
T ss_pred cCHHHHHHHHHHhcCCC
Confidence 799999999999998
No 29
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=100.00 E-value=1e-32 Score=275.60 Aligned_cols=173 Identities=65% Similarity=1.095 Sum_probs=158.7
Q ss_pred CceEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEec
Q 003316 547 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFG 626 (831)
Q Consensus 547 ~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 626 (831)
+|.|+|||||.+.+...+..+++++|++++++++|||.++.+.|++|....+...+.+...+...++|+...+++||+||
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Iw~fG 80 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKSPNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKIWAFG 80 (177)
T ss_pred CCCCCEeeecccCCCccEEEEcCCcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcEEEEC
Confidence 69999999999888767778999999999999999999999999998876555555666777789999999999999999
Q ss_pred cCCCCCceEEeccccccc----hHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHH
Q 003316 627 PETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 702 (831)
Q Consensus 627 p~~~g~n~~~~~~~g~~~----~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~ 702 (831)
|++.|+|+|+|.+.+.++ +++++++|++||++|+++|||||+||+||+|+|.++.+|.+..+...+|+++|+|+||
T Consensus 81 P~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~r~a~ 160 (177)
T cd01681 81 PDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAARRAC 160 (177)
T ss_pred CCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHHHHHH
Confidence 999999999999888777 8999999999999999999999999999999999999998766777899999999999
Q ss_pred HHHHHhcCCeeeecEEE
Q 003316 703 YASQLTAKPRLLEPVYL 719 (831)
Q Consensus 703 ~~al~~a~p~LlEPi~~ 719 (831)
++|+++|+|+||||||.
T Consensus 161 ~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 161 YAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHhhCCCEEEccccC
Confidence 99999999999999994
No 30
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.97 E-value=1.7e-31 Score=283.93 Aligned_cols=236 Identities=22% Similarity=0.266 Sum_probs=169.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc-------CCceEEecCchhhheeceeeeeceeEEEEeechhhhhccc
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV-------AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 90 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~-------~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~ 90 (831)
++|||+|+||+|||||||+++|++.+|.+.+.- .| .+++|+.++|++||+|+..+..++.|.
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~-~t~~D~~~~e~~rg~si~~~~~~~~~~---------- 69 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRK-HATSDWMEIEKQRGISVTSSVMQFEYR---------- 69 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCC-CccCCCcHHHHhCCCCeEEEEEEEeeC----------
Confidence 479999999999999999999999999988731 12 357999999999999999999999996
Q ss_pred cccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcchhhccCCC
Q 003316 91 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRCFLELQVD 158 (831)
Q Consensus 91 ~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~~~~~~~~ 158 (831)
++++||||||||.+|..++..+++.+|++|+|+|+.. ... .+.|.++|+||+|+. +++
T Consensus 70 ------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~----~a~ 139 (267)
T cd04169 70 ------DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE----GRD 139 (267)
T ss_pred ------CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC----CCC
Confidence 8999999999999999999999999999999999975 122 245556699999998 887
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhccccc
Q 003316 159 GEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 238 (831)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~ 238 (831)
..++++.+++.+. . .+...++|++++...-++ +|+..+.++.|.+
T Consensus 140 ~~~~~~~l~~~l~-------~-----------~~~~~~~Pi~~~~~~~g~--------------vd~~~~~a~~~~~--- 184 (267)
T cd04169 140 PLELLDEIEEELG-------I-----------DCTPLTWPIGMGKDFKGV--------------YDRRTGEVELYDR--- 184 (267)
T ss_pred HHHHHHHHHHHHC-------C-----------CceeEEecccCCCceEEE--------------EEhhhCEEEEecC---
Confidence 5554444433221 0 111235666655221111 5555544444411
Q ss_pred CcCCC-ceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc
Q 003316 239 DPATR-KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 316 (831)
Q Consensus 239 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 316 (831)
...+ .+...+.+. .+.+.+++.|+++||+|+++ .+++.+++. ..+.+++. ++++|+
T Consensus 185 -~~~~~~~~~~~~p~----------------~~~e~~~e~~~~l~e~~~e~--~~~~~~~~~---~~~~~~~~~~~~~Pv 242 (267)
T cd04169 185 -GAGGATIAPEETKG----------------LDDPKLDELGGDLAEQLREE--LELLEGAGP---EFDQEAFLAGELTPV 242 (267)
T ss_pred -CCCCccceeccCCc----------------ccHHHHHhcCHHHHHHHhCC--CccchhhhH---HHhHHHHHcCCEEEE
Confidence 1011 111111111 11277888999999999987 677777764 34444544 689997
Q ss_pred ----------HHHHHHHHHhcCCCc
Q 003316 317 ----------SSALLEMMIFHLPSP 331 (831)
Q Consensus 317 ----------~~~LLd~I~~~lPsP 331 (831)
++.|||+|++|+|||
T Consensus 243 ~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 243 FFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred EecccccCcCHHHHHHHHHHHCCCC
Confidence 799999999999998
No 31
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.97 E-value=6.3e-31 Score=275.01 Aligned_cols=211 Identities=32% Similarity=0.456 Sum_probs=164.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccc---cCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~---~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
||+++||+|+|||||+++|++.+|.+.+. ..| .+++|+.++|++||+|+..+...+.|. +
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~-~~~~D~~~~e~~rg~ti~~~~~~~~~~----------------~ 63 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKG-TTRTDTMELERQRGITIFSAVASFQWE----------------D 63 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCC-cccCCCchhHhhCCCceeeeeEEEEEC----------------C
Confidence 79999999999999999999999998762 122 468999999999999999999999996 7
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCCcEEEEecCcchhhccCCCHHHHHHH
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIRPVLTVNKMDRCFLELQVDGEEAYQT 165 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~~ii~iNKiD~~~~~~~~~~~~~~~~ 165 (831)
+++++||||||.+|..++..+++.+|++++|+|+.+ .+ ..+.|.++|+||+|+. +++++++++.
T Consensus 64 ~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~----~a~~~~~~~~ 139 (237)
T cd04168 64 TKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA----GADLEKVYQE 139 (237)
T ss_pred EEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc----CCCHHHHHHH
Confidence 899999999999999999999999999999999987 22 2345657799999999 8886655544
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCCce
Q 003316 166 FQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKW 245 (831)
Q Consensus 166 l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~~~ 245 (831)
+++.+. .. +...++| +|.+.. +
T Consensus 140 i~~~~~---~~---------------~~~~~~p------~~~~~~---------------------------~------- 161 (237)
T cd04168 140 IKEKLS---SD---------------IVPMQKV------GLAPNI---------------------------C------- 161 (237)
T ss_pred HHHHHC---CC---------------eEEEECC------cEeeee---------------------------e-------
Confidence 443322 11 1111222 111100 0
Q ss_pred eecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc--------
Q 003316 246 TSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA-------- 316 (831)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~-------- 316 (831)
...+ + ..+|+|.+++.||++||+||++ .+++.+|+. ++|++++. ++++|+
T Consensus 162 ~~~~---------~-------~~~l~e~vae~dd~l~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~Pv~~gsa~~~ 220 (237)
T cd04168 162 ETNE---------I-------DDEFWETLAEGDDELLEKYLEG--GPIEELELD---NELSARIAKRKVFPVYHGSALKG 220 (237)
T ss_pred eeee---------c-------cHHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCeEEEEEccccCC
Confidence 0000 0 1378999999999999999997 789999997 56666665 689997
Q ss_pred --HHHHHHHHHhcCCCc
Q 003316 317 --SSALLEMMIFHLPSP 331 (831)
Q Consensus 317 --~~~LLd~I~~~lPsP 331 (831)
++.|||++++|+|||
T Consensus 221 ~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 221 IGIEELLEGITKLFPTS 237 (237)
T ss_pred cCHHHHHHHHHHhcCCC
Confidence 899999999999998
No 32
>CHL00071 tufA elongation factor Tu
Probab=99.97 E-value=2.6e-30 Score=291.96 Aligned_cols=289 Identities=22% Similarity=0.364 Sum_probs=203.8
Q ss_pred HHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcc
Q 003316 10 RRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY 89 (831)
Q Consensus 10 ~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~ 89 (831)
.+++.+.+..+||+++||+|||||||+++|++..|.+..........+|+.++|++||+|++++...+.+.
T Consensus 3 ~~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--------- 73 (409)
T CHL00071 3 REKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE--------- 73 (409)
T ss_pred hhhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC---------
Confidence 35677778899999999999999999999999988876543322357899999999999999988777654
Q ss_pred ccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcE-EEEecCcchhhccC
Q 003316 90 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPV-LTVNKMDRCFLELQ 156 (831)
Q Consensus 90 ~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~i-i~iNKiD~~~~~~~ 156 (831)
+.+++|||||||.+|..++.++++.+|+|++|||+.+ +...+.|.+ +++||||+. +
T Consensus 74 -------~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~----~ 142 (409)
T CHL00071 74 -------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV----D 142 (409)
T ss_pred -------CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCC----C
Confidence 6789999999999999999999999999999999985 223455535 599999987 4
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhccc
Q 003316 157 VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 236 (831)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~ 236 (831)
. ++.++ .+.++++..+..+.. .+..-++.+.|+..||......
T Consensus 143 ~--~~~~~---~~~~~l~~~l~~~~~--------~~~~~~ii~~Sa~~g~n~~~~~------------------------ 185 (409)
T CHL00071 143 D--EELLE---LVELEVRELLSKYDF--------PGDDIPIVSGSALLALEALTEN------------------------ 185 (409)
T ss_pred H--HHHHH---HHHHHHHHHHHHhCC--------CCCcceEEEcchhhcccccccC------------------------
Confidence 2 23332 233344544543211 1111245556776665331100
Q ss_pred ccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhccccc
Q 003316 237 FFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPA 316 (831)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~ 316 (831)
. .+. .+ ...|...
T Consensus 186 -----~-~~~-----------------------------~~--------------------------------~~~w~~~ 198 (409)
T CHL00071 186 -----P-KIK-----------------------------RG--------------------------------ENKWVDK 198 (409)
T ss_pred -----c-ccc-----------------------------cc--------------------------------CCchhhh
Confidence 0 000 00 0012222
Q ss_pred HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCE
Q 003316 317 SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLK 396 (831)
Q Consensus 317 ~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~ 396 (831)
...||+++.+++|+|.. +.+.||.++|.+++..++.|. ++++||++|+++.||.
T Consensus 199 ~~~ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~v~~~~g~G~-Vv~G~V~sG~l~~Gd~ 252 (409)
T CHL00071 199 IYNLMDAVDSYIPTPER-------------------------DTDKPFLMAIEDVFSITGRGT-VATGRIERGTVKVGDT 252 (409)
T ss_pred HHHHHHHHHhhCCCCCC-------------------------CCCCCEEEEEEEEEEeCCCeE-EEEEEEecCEEeeCCE
Confidence 35788899888888731 235799999999998888886 8999999999999999
Q ss_pred EEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eeecCC
Q 003316 397 VRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 459 (831)
Q Consensus 397 l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl~~~~ 459 (831)
|.+++++ .+. ..+|..|.... .++++|.|||+|++. |++....+.| +|+++.
T Consensus 253 v~i~p~~--~~~-----~~~VksI~~~~----~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~ 307 (409)
T CHL00071 253 VEIVGLR--ETK-----TTTVTGLEMFQ----KTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPG 307 (409)
T ss_pred EEEeeCC--CCc-----EEEEEEEEEcC----cCCCEECCCceeEEEEcCCCHHHcCCeEEEecCC
Confidence 9876432 111 26888887532 478999999999654 6654434778 777653
No 33
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.8e-29 Score=266.40 Aligned_cols=273 Identities=27% Similarity=0.410 Sum_probs=192.6
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc----------cCCc-----eEEecCchhhheeceeeeeceeEEEE
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLYY 79 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~e~~rgiTi~~~~~~~~~ 79 (831)
..+...|++++||+|||||||+.+|||..|.+++. ..|+ +|.||+.++||+||+||+.+..+|..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 34567899999999999999999999999999873 2343 57999999999999999999998887
Q ss_pred eechhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------------Hh--hhCCC
Q 003316 80 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------------AL--GERIR 140 (831)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------------~~--~~~~~ 140 (831)
+ .+.++|+|||||.||..+++.++.+||+|||||||.. .+ ..++.
T Consensus 83 ~----------------k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~ 146 (428)
T COG5256 83 D----------------KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIK 146 (428)
T ss_pred C----------------CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCc
Confidence 5 7789999999999999999999999999999999997 11 22333
Q ss_pred -cEEEEecCcchhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhh
Q 003316 141 -PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 219 (831)
Q Consensus 141 -~ii~iNKiD~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 219 (831)
.|+++||||.. .++ .++|+++..+++.++..+...+. ++.|.|..+ ..|-..+-.
T Consensus 147 ~lIVavNKMD~v----~wd----e~rf~ei~~~v~~l~k~~G~~~~-~v~FIPiSg-------~~G~Nl~~~-------- 202 (428)
T COG5256 147 QLIVAVNKMDLV----SWD----EERFEEIVSEVSKLLKMVGYNPK-DVPFIPISG-------FKGDNLTKK-------- 202 (428)
T ss_pred eEEEEEEccccc----ccC----HHHHHHHHHHHHHHHHHcCCCcc-CCeEEeccc-------ccCCccccc--------
Confidence 46699999999 887 45788888888776654432221 344555333 222111000
Q ss_pred hcCCChHHHHHHhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHH
Q 003316 220 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 299 (831)
Q Consensus 220 ~~~i~~~~l~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~ 299 (831)
. +.-.|..+|
T Consensus 203 ------s--------------~~~pWY~Gp-------------------------------------------------- 212 (428)
T COG5256 203 ------S--------------ENMPWYKGP-------------------------------------------------- 212 (428)
T ss_pred ------C--------------cCCcCccCC--------------------------------------------------
Confidence 0 001122221
Q ss_pred HhHHHHHHHHHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCc
Q 003316 300 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGR 379 (831)
Q Consensus 300 ~~~~~l~~~i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~ 379 (831)
.||+++. .+..|. + .-+.||+.-|..++.-...|.
T Consensus 213 -------------------TLleaLd-~~~~p~------------~-------------~~d~Plr~pI~~v~~i~~~gt 247 (428)
T COG5256 213 -------------------TLLEALD-QLEPPE------------R-------------PLDKPLRLPIQDVYSISGIGT 247 (428)
T ss_pred -------------------hHHHHHh-ccCCCC------------C-------------CCCCCeEeEeeeEEEecCCce
Confidence 1233332 333331 0 025789999998887556676
Q ss_pred eeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccceeee
Q 003316 380 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNATLT 456 (831)
Q Consensus 380 ~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~tgTl~ 456 (831)
+..+||-||.|++||.|++...+ .. -.|+.+.. ..++++.+.+||.+.+ +|++....+.|.++
T Consensus 248 -v~vGrVEsG~i~~g~~v~~~p~~----~~-----~evksie~----~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~ 312 (428)
T COG5256 248 -VPVGRVESGVIKPGQKVTFMPAG----VV-----GEVKSIEM----HHEEISQAEPGDNVGFNVRGVEKNDIRRGDVI 312 (428)
T ss_pred -EEEEEEeeeeeccCCEEEEecCc----ce-----EEEeeeee----cccccccCCCCCeEEEEecCCchhccCCccEe
Confidence 88899999999999999986432 11 35666553 2778999999999865 46655444778444
No 34
>PRK12736 elongation factor Tu; Reviewed
Probab=99.97 E-value=8.3e-29 Score=278.33 Aligned_cols=275 Identities=24% Similarity=0.366 Sum_probs=188.3
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccccc
Q 003316 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (831)
Q Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (831)
...+..+||+++||+|||||||+++|+...+...+......+.+|..++|++||+|++++...+.+
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-------------- 72 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-------------- 72 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC--------------
Confidence 445678999999999999999999998654322111011123689999999999999987666544
Q ss_pred CCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCc-EEEEecCcchhhccCCCHH
Q 003316 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRP-VLTVNKMDRCFLELQVDGE 160 (831)
Q Consensus 94 ~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~-ii~iNKiD~~~~~~~~~~~ 160 (831)
+++.++|||||||.+|..++.++++.+|++++|||+.+ +...+.|. |+++||||+. +. +
T Consensus 73 --~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~----~~--~ 144 (394)
T PRK12736 73 --EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV----DD--E 144 (394)
T ss_pred --CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc----ch--H
Confidence 36789999999999999999999999999999999975 22345564 4699999986 32 2
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCc
Q 003316 161 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 240 (831)
Q Consensus 161 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~ 240 (831)
+.++ .+.++++..+..+.. .+...++...|+..|+.
T Consensus 145 ~~~~---~i~~~i~~~l~~~~~--------~~~~~~ii~vSa~~g~~--------------------------------- 180 (394)
T PRK12736 145 ELLE---LVEMEVRELLSEYDF--------PGDDIPVIRGSALKALE--------------------------------- 180 (394)
T ss_pred HHHH---HHHHHHHHHHHHhCC--------CcCCccEEEeecccccc---------------------------------
Confidence 2222 222344444432110 00011222233321100
Q ss_pred CCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHH
Q 003316 241 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 320 (831)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 320 (831)
. . ..|.+....|
T Consensus 181 ------------------------------------~-------------~-------------------~~~~~~i~~L 192 (394)
T PRK12736 181 ------------------------------------G-------------D-------------------PKWEDAIMEL 192 (394)
T ss_pred ------------------------------------C-------------C-------------------CcchhhHHHH
Confidence 0 0 0122234578
Q ss_pred HHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEc
Q 003316 321 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 400 (831)
Q Consensus 321 Ld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~ 400 (831)
++++.+++|.|.. +.++||.++|++++..++.|. ++.+||++|+|+.||.|+++
T Consensus 193 l~~l~~~lp~~~~-------------------------~~~~p~r~~I~~~~~~~g~G~-Vv~G~v~~G~l~~gd~v~i~ 246 (394)
T PRK12736 193 MDAVDEYIPTPER-------------------------DTDKPFLMPVEDVFTITGRGT-VVTGRVERGTVKVGDEVEIV 246 (394)
T ss_pred HHHHHHhCCCCCC-------------------------CCCCCeEEEEEEEEecCCcEE-EEEEEEeecEEecCCEEEEe
Confidence 8888889987720 235799999999998888886 89999999999999999987
Q ss_pred CCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecCC
Q 003316 401 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 459 (831)
Q Consensus 401 ~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~~ 459 (831)
+.+. +. ..+|..|... ..++++|.|||++++ .|++....+.| +|++++
T Consensus 247 p~~~--~~-----~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 247 GIKE--TQ-----KTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred cCCC--Ce-----EEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 5321 11 2688888752 457899999999966 67754334678 787653
No 35
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.96 E-value=1.6e-28 Score=278.54 Aligned_cols=277 Identities=24% Similarity=0.346 Sum_probs=189.7
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc----------CCc-----eEEecCchhhheeceeeeeceeEEEE
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLYY 79 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~e~~rgiTi~~~~~~~~~ 79 (831)
..+..+||+++||+|||||||+++||+.+|.+.+.. .|. ++++|+.++|++||+|++.+...|.|
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 346689999999999999999999999999887631 111 35799999999999999998888877
Q ss_pred eechhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------------HhhhCCC
Q 003316 80 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------------ALGERIR 140 (831)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------------~~~~~~~ 140 (831)
. ++.+||||||||.||..++.++++.+|+||||||+.+ +...+.+
T Consensus 83 ~----------------~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~ 146 (447)
T PLN00043 83 T----------------KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVK 146 (447)
T ss_pred C----------------CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCC
Confidence 4 8899999999999999999999999999999999974 1123566
Q ss_pred c-EEEEecCcchhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhh
Q 003316 141 P-VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 219 (831)
Q Consensus 141 ~-ii~iNKiD~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 219 (831)
+ |+++||||+. ..+ ....++.+++++++.++..+..+ +..-.+...|+..|.+..-.
T Consensus 147 ~iIV~vNKmD~~----~~~--~~~~~~~~i~~ei~~~l~~~g~~--------~~~~~~ipiSa~~G~ni~~~-------- 204 (447)
T PLN00043 147 QMICCCNKMDAT----TPK--YSKARYDEIVKEVSSYLKKVGYN--------PDKIPFVPISGFEGDNMIER-------- 204 (447)
T ss_pred cEEEEEEcccCC----chh--hhHHHHHHHHHHHHHHHHHcCCC--------cccceEEEEecccccccccc--------
Confidence 6 5599999976 222 12346777777777776543211 11111222233333211000
Q ss_pred hcCCChHHHHHHhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHH
Q 003316 220 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 299 (831)
Q Consensus 220 ~~~i~~~~l~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~ 299 (831)
. + .-.|
T Consensus 205 ------~---~-----------~~~W------------------------------------------------------ 210 (447)
T PLN00043 205 ------S---T-----------NLDW------------------------------------------------------ 210 (447)
T ss_pred ------c---c-----------CCcc------------------------------------------------------
Confidence 0 0 0001
Q ss_pred HhHHHHHHHHHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCc
Q 003316 300 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGR 379 (831)
Q Consensus 300 ~~~~~l~~~i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~ 379 (831)
.-. ..||+++.. +|.|. .+.+.|+.+.|..++..++.|.
T Consensus 211 --------------y~g-~tLl~~l~~-i~~p~-------------------------~~~~~plr~~I~~v~~~~g~G~ 249 (447)
T PLN00043 211 --------------YKG-PTLLEALDQ-INEPK-------------------------RPSDKPLRLPLQDVYKIGGIGT 249 (447)
T ss_pred --------------cch-HHHHHHHhh-cCCCc-------------------------cccCCCcEEEEEEEEEeCCcEE
Confidence 000 134555543 34341 0134788888888887677665
Q ss_pred eeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eee
Q 003316 380 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLT 456 (831)
Q Consensus 380 ~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl~ 456 (831)
+..+||.+|+|+.||.|.++.. +. ..+|..|.. ...++++|.|||.+++. +++....+.| .|+
T Consensus 250 -vv~G~V~~G~l~~Gd~v~~~P~----~~-----~~~VksI~~----~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~ 315 (447)
T PLN00043 250 -VPVGRVETGVIKPGMVVTFGPT----GL-----TTEVKSVEM----HHESLQEALPGDNVGFNVKNVAVKDLKRGYVAS 315 (447)
T ss_pred -EEEEEEECCEEeeCCEEEEcCC----CC-----EEEEEEEEE----CCeEeCEecCCCeEEEEECCCCHhhCCCccEEc
Confidence 8999999999999999998532 12 257888764 34689999999998775 4433334677 666
Q ss_pred cC
Q 003316 457 NE 458 (831)
Q Consensus 457 ~~ 458 (831)
+.
T Consensus 316 ~~ 317 (447)
T PLN00043 316 NS 317 (447)
T ss_pred cC
Confidence 54
No 36
>PLN03126 Elongation factor Tu; Provisional
Probab=99.96 E-value=2.5e-28 Score=277.85 Aligned_cols=295 Identities=24% Similarity=0.384 Sum_probs=201.9
Q ss_pred ccHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeech
Q 003316 4 FTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD 83 (831)
Q Consensus 4 ~~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~ 83 (831)
++...+.+.++..+..+||+++||+|||||||+++|++..|.+..........+|+.++|++||+|++.+...+.+.
T Consensus 66 ~~~~~~~~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--- 142 (478)
T PLN03126 66 FTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--- 142 (478)
T ss_pred hhHHHHHhhhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC---
Confidence 34445555666677899999999999999999999999998876643333467999999999999999988887764
Q ss_pred hhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCc-EEEEecCcc
Q 003316 84 AALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRP-VLTVNKMDR 150 (831)
Q Consensus 84 ~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~-ii~iNKiD~ 150 (831)
++.++|||||||.+|..++.++++.+|+|++|||+.+ +...++|. |+++||||+
T Consensus 143 -------------~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 143 -------------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred -------------CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 7799999999999999999999999999999999986 22345553 459999998
Q ss_pred hhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHH
Q 003316 151 CFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMME 230 (831)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~ 230 (831)
. . .++.++ .+.++++.++..+..+ +..-++...|+..||.....
T Consensus 210 ~----~--~~~~~~---~i~~~i~~~l~~~g~~--------~~~~~~vp~Sa~~g~n~~~~------------------- 253 (478)
T PLN03126 210 V----D--DEELLE---LVELEVRELLSSYEFP--------GDDIPIISGSALLALEALME------------------- 253 (478)
T ss_pred c----C--HHHHHH---HHHHHHHHHHHhcCCC--------cCcceEEEEEcccccccccc-------------------
Confidence 6 4 233333 3334555555432111 11112333555555422100
Q ss_pred HhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH
Q 003316 231 RLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM 310 (831)
Q Consensus 231 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~ 310 (831)
+ ..... ++
T Consensus 254 ----~-------~~~~~-----------------------------g~-------------------------------- 261 (478)
T PLN03126 254 ----N-------PNIKR-----------------------------GD-------------------------------- 261 (478)
T ss_pred ----c-------ccccc-----------------------------CC--------------------------------
Confidence 0 00000 00
Q ss_pred hcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeE
Q 003316 311 QTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGK 390 (831)
Q Consensus 311 ~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGt 390 (831)
..|......||+++.++.|.|.. +.+.|+.++|..++..++.|. +..+||.+|+
T Consensus 262 ~~wy~~i~~Ll~~l~~~~~~p~r-------------------------~~~~p~r~~I~~vf~v~g~Gt-Vv~G~V~sG~ 315 (478)
T PLN03126 262 NKWVDKIYELMDAVDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRGT-VATGRVERGT 315 (478)
T ss_pred CchhhhHHHHHHHHHHhCCCCCC-------------------------ccccceeeEEEEEEEeCCceE-EEEEEEEcCe
Confidence 00111113567777777766620 134688889988887777776 8999999999
Q ss_pred ecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecCC
Q 003316 391 VATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 459 (831)
Q Consensus 391 L~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~~ 459 (831)
|+.||.|++...+ .. ...+|..|... ..++++|.|||.+++ .|++....+.| .|+++.
T Consensus 316 i~~Gd~v~i~p~~----~~---~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~ 376 (478)
T PLN03126 316 VKVGETVDIVGLR----ET---RSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPG 376 (478)
T ss_pred EecCCEEEEecCC----Cc---eEEEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCccEEecCC
Confidence 9999999986321 11 12578887643 467999999999887 56655444667 777653
No 37
>PRK12735 elongation factor Tu; Reviewed
Probab=99.96 E-value=3.2e-28 Score=273.77 Aligned_cols=281 Identities=21% Similarity=0.318 Sum_probs=192.8
Q ss_pred HHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcc
Q 003316 10 RRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY 89 (831)
Q Consensus 10 ~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~ 89 (831)
++...+.+...||+++||+|||||||+++|++..+...+......+.+|+.++|++||+|++.+...+.+.
T Consensus 3 ~~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~--------- 73 (396)
T PRK12735 3 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA--------- 73 (396)
T ss_pred hhhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC---------
Confidence 34566777889999999999999999999998644221111111247899999999999999877666543
Q ss_pred ccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCCcEE-EEecCcchhhccC
Q 003316 90 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIRPVL-TVNKMDRCFLELQ 156 (831)
Q Consensus 90 ~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~~ii-~iNKiD~~~~~~~ 156 (831)
+.+++|||||||.+|..++.+++..+|+|++|||+.+ .+ ..+.|.++ ++||||+. +
T Consensus 74 -------~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~----~ 142 (396)
T PRK12735 74 -------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV----D 142 (396)
T ss_pred -------CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCc----c
Confidence 6789999999999999999999999999999999986 22 23456564 79999986 4
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhccc
Q 003316 157 VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 236 (831)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~ 236 (831)
.++.+ ..+.++++..+..+.. .+...++.+.|+..||....
T Consensus 143 --~~~~~---~~~~~ei~~~l~~~~~--------~~~~~~ii~~Sa~~g~n~~~-------------------------- 183 (396)
T PRK12735 143 --DEELL---ELVEMEVRELLSKYDF--------PGDDTPIIRGSALKALEGDD-------------------------- 183 (396)
T ss_pred --hHHHH---HHHHHHHHHHHHHcCC--------CcCceeEEecchhccccCCC--------------------------
Confidence 22222 2233344444443211 01111233344433321000
Q ss_pred ccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhccccc
Q 003316 237 FFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPA 316 (831)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~ 316 (831)
. ..|.+.
T Consensus 184 -----~--------------------------------------------------------------------~~w~~~ 190 (396)
T PRK12735 184 -----D--------------------------------------------------------------------EEWEAK 190 (396)
T ss_pred -----C--------------------------------------------------------------------Cccccc
Confidence 0 012222
Q ss_pred HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCE
Q 003316 317 SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLK 396 (831)
Q Consensus 317 ~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~ 396 (831)
...||+++.+++|.|.. +.++||.++|..++..++.|. ++.+||.+|+|+.||.
T Consensus 191 ~~~Ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~Gt-vv~G~v~~G~i~~gd~ 244 (396)
T PRK12735 191 ILELMDAVDSYIPEPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIVKVGDE 244 (396)
T ss_pred HHHHHHHHHhcCCCCCc-------------------------cCCCCeEEEEEEEEecCCceE-EEEEEEEecEEeCCCE
Confidence 35688888888987721 235789999999988777775 8999999999999999
Q ss_pred EEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecCC
Q 003316 397 VRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 459 (831)
Q Consensus 397 l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~~ 459 (831)
|+++..+ ... ..+|..|.. ...++++|.|||.+++ .|++....+.| +||++.
T Consensus 245 v~i~p~~---~~~----~~~VksI~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 245 VEIVGIK---ETQ----KTTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred EEEecCC---CCe----EEEEEEEEE----CCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 9987532 011 257888764 2468999999999888 57654444678 787653
No 38
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.96 E-value=1.2e-28 Score=263.65 Aligned_cols=240 Identities=25% Similarity=0.382 Sum_probs=176.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccc---cCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~---~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
||+|+||.|+|||||+++|++.+|.+.+. ..| .+.+|+.++|++||+|+.+....+.|. +
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g-~~~~d~~~~e~~r~~ti~~~~~~~~~~----------------~ 63 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDG-TTVSDYDPEEIKRKMSISTSVAPLEWK----------------G 63 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCC-cccCCCCHHHHhhcccccceeEEEEEC----------------C
Confidence 79999999999999999999999987652 123 467899999999999999999999885 7
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCCcEEEEecCcchhhccCCCHHHHHHH
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIRPVLTVNKMDRCFLELQVDGEEAYQT 165 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~~ii~iNKiD~~~~~~~~~~~~~~~~ 165 (831)
+.+++||||||.+|..++..+++.+|++++|+|+.. .+ ..+.|.++|+||+|+. +.+.++..+.
T Consensus 64 ~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~----~~~~~~~~~~ 139 (268)
T cd04170 64 HKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE----RADFDKTLAA 139 (268)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC----CCCHHHHHHH
Confidence 899999999999999999999999999999999986 11 2345667799999999 7775554444
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccC--cceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCC
Q 003316 166 FQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 243 (831)
Q Consensus 166 l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~ 243 (831)
+++.+. . .+...++|.+.+ ..|+ +|......+.|. ...
T Consensus 140 l~~~~~-------~-----------~~~~~~ip~~~~~~~~~~----------------vd~~~~~~~~~~-----~~~- 179 (268)
T cd04170 140 LQEAFG-------R-----------PVVPLQLPIGEGDDFKGV----------------VDLLTEKAYIYS-----PGA- 179 (268)
T ss_pred HHHHhC-------C-----------CeEEEEecccCCCceeEE----------------EEcccCEEEEcc-----CCC-
Confidence 433221 0 011124444433 1121 223222223331 111
Q ss_pred ceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc------
Q 003316 244 KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA------ 316 (831)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~------ 316 (831)
.....+ ....+.+.+.+.+.+|+|.+++.|+++|++||++ .+++.+|+. +++++++. +.++|+
T Consensus 180 ~~~~~~-----~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~--~~~~~~~l~---~~l~~~~~~~~~~pv~~gSa~ 249 (268)
T cd04170 180 PSEEIE-----IPEELKEEVAEAREELLEAVAETDDELMEKYLEG--GELTEEELH---AGLRRALRAGLLVPVLCGSAL 249 (268)
T ss_pred cceecc-----CCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCEEEEEEeeCC
Confidence 111111 2234555566678899999999999999999997 789999997 55666655 688886
Q ss_pred ----HHHHHHHHHhcCCCc
Q 003316 317 ----SSALLEMMIFHLPSP 331 (831)
Q Consensus 317 ----~~~LLd~I~~~lPsP 331 (831)
++.|||++++|+|+|
T Consensus 250 ~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 250 TNIGVRELLDALVHLLPSP 268 (268)
T ss_pred CCcCHHHHHHHHHHhCCCC
Confidence 799999999999998
No 39
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=8.8e-28 Score=270.46 Aligned_cols=275 Identities=21% Similarity=0.380 Sum_probs=185.1
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccc
Q 003316 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (831)
Q Consensus 13 ~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (831)
.++.+..+||+++||+|||||||+++|++......+......+.+|..++|++||+|++.+...+.+
T Consensus 6 ~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~------------- 72 (394)
T TIGR00485 6 FERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET------------- 72 (394)
T ss_pred hcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-------------
Confidence 4455778999999999999999999998653221111011124799999999999999987766554
Q ss_pred cCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEE-EEecCcchhhccCCCH
Q 003316 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVL-TVNKMDRCFLELQVDG 159 (831)
Q Consensus 93 ~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii-~iNKiD~~~~~~~~~~ 159 (831)
+++.++|||||||.+|..++.+++..+|++++|||+.+ +...+.|+++ ++||||+. +.
T Consensus 73 ---~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~----~~-- 143 (394)
T TIGR00485 73 ---ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV----DD-- 143 (394)
T ss_pred ---CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC----CH--
Confidence 36789999999999999999999999999999999976 2234566664 89999986 42
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccC
Q 003316 160 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 239 (831)
Q Consensus 160 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~ 239 (831)
++.+ +.+.++++..+..+... +..-++.+.|+..|+
T Consensus 144 ~~~~---~~~~~~i~~~l~~~~~~--------~~~~~ii~vSa~~g~--------------------------------- 179 (394)
T TIGR00485 144 EELL---ELVEMEVRELLSEYDFP--------GDDTPIIRGSALKAL--------------------------------- 179 (394)
T ss_pred HHHH---HHHHHHHHHHHHhcCCC--------ccCccEEECcccccc---------------------------------
Confidence 2222 22333444444322110 000112222321110
Q ss_pred cCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHH
Q 003316 240 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSA 319 (831)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~ 319 (831)
+ + +.+ |......
T Consensus 180 --~---------g-------------------------~~~--------------------------------~~~~~~~ 191 (394)
T TIGR00485 180 --E---------G-------------------------DAE--------------------------------WEAKILE 191 (394)
T ss_pred --c---------c-------------------------CCc--------------------------------hhHhHHH
Confidence 0 0 000 0000135
Q ss_pred HHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEE
Q 003316 320 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 399 (831)
Q Consensus 320 LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v 399 (831)
||+++.+++|.|.. +.+.||.++|+.++..+..|. ++.+||.+|+|+.||.|++
T Consensus 192 ll~~l~~~~~~~~~-------------------------~~~~p~r~~V~~vf~~~g~G~-Vv~G~v~~G~l~~gd~v~i 245 (394)
T TIGR00485 192 LMDAVDEYIPTPER-------------------------ETDKPFLMPIEDVFSITGRGT-VVTGRVERGIVKVGEEVEI 245 (394)
T ss_pred HHHHHHhcCCCCCC-------------------------CCCCCeEEEEEEEEeeCCceE-EEEEEEEeeEEeCCCEEEE
Confidence 77888888887721 235789999999998888776 8999999999999999998
Q ss_pred cCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecC
Q 003316 400 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 458 (831)
Q Consensus 400 ~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~ 458 (831)
.+.. .+. ..+|..|... ..++++|.|||.+++ .|++....+.| +|+++
T Consensus 246 ~p~~--~~~-----~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~ 296 (394)
T TIGR00485 246 VGLK--DTR-----KTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVLAKP 296 (394)
T ss_pred ecCC--CCc-----EEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEEecC
Confidence 6421 111 2578888753 467899999999976 56654334677 77765
No 40
>PRK00049 elongation factor Tu; Reviewed
Probab=99.96 E-value=2.1e-27 Score=266.99 Aligned_cols=280 Identities=21% Similarity=0.335 Sum_probs=188.3
Q ss_pred HhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccc
Q 003316 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 90 (831)
Q Consensus 11 ~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~ 90 (831)
+...+.+..+||+++||+|||||||+++|++......+........+|+.++|++||+|++++...+.+.
T Consensus 4 ~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~---------- 73 (396)
T PRK00049 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE---------- 73 (396)
T ss_pred hhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC----------
Confidence 4456667889999999999999999999998542211110111236899999999999999887665543
Q ss_pred cccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEE-EEecCcchhhccCC
Q 003316 91 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVL-TVNKMDRCFLELQV 157 (831)
Q Consensus 91 ~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii-~iNKiD~~~~~~~~ 157 (831)
+.+++|||||||.+|..++.+++..+|++++|||+.+ .+. .+.|.++ ++||||+. +
T Consensus 74 ------~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~----~- 142 (396)
T PRK00049 74 ------KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV----D- 142 (396)
T ss_pred ------CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCc----c-
Confidence 6789999999999999999999999999999999976 222 3455554 89999987 4
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccc
Q 003316 158 DGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 237 (831)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~ 237 (831)
.++.+ +.+..+++..+..+.. .+..-++...|+..||...
T Consensus 143 -~~~~~---~~~~~~i~~~l~~~~~--------~~~~~~iv~iSa~~g~~~~---------------------------- 182 (396)
T PRK00049 143 -DEELL---ELVEMEVRELLSKYDF--------PGDDTPIIRGSALKALEGD---------------------------- 182 (396)
T ss_pred -hHHHH---HHHHHHHHHHHHhcCC--------CccCCcEEEeecccccCCC----------------------------
Confidence 22322 2333344444433211 0111122233443222100
Q ss_pred cCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccH
Q 003316 238 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPAS 317 (831)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~ 317 (831)
.. ..|....
T Consensus 183 ---~~--------------------------------------------------------------------~~w~~~~ 191 (396)
T PRK00049 183 ---DD--------------------------------------------------------------------EEWEKKI 191 (396)
T ss_pred ---Cc--------------------------------------------------------------------ccccccH
Confidence 00 0011112
Q ss_pred HHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEE
Q 003316 318 SALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKV 397 (831)
Q Consensus 318 ~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l 397 (831)
..||+++.+++|.|.. +.+.||.+.|..++..+..|. ++.+||.+|++++||.|
T Consensus 192 ~~ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~G~-Vv~G~v~~G~i~~gd~v 245 (396)
T PRK00049 192 LELMDAVDSYIPTPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIIKVGEEV 245 (396)
T ss_pred HHHHHHHHhcCCCCCC-------------------------CCCCCeEEEEEEEEeeCCceE-EEEEEEeeeEEecCCEE
Confidence 4678888888887721 124789888888887777775 89999999999999999
Q ss_pred EEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecCC
Q 003316 398 RIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 459 (831)
Q Consensus 398 ~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~~ 459 (831)
++++.. .+. ..+|+.|... ..++++|.|||.+++ .|++....+.| +|+++.
T Consensus 246 ~i~p~~--~~~-----~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 246 EIVGIR--DTQ-----KTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred EEeecC--CCc-----eEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 987532 111 2578887653 357999999999887 56644334667 777653
No 41
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.96 E-value=1.9e-27 Score=270.13 Aligned_cols=277 Identities=24% Similarity=0.343 Sum_probs=186.3
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc----------CC--c---eEEecCchhhheeceeeeeceeEEEE
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AG--D---VRMTDTRQDEAERGITIKSTGISLYY 79 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~g--~---~~~~D~~~~e~~rgiTi~~~~~~~~~ 79 (831)
..+...||+++||+|||||||+++|++.+|.+.+.. .| + ++.+|+.++|++||+|++.+...+.|
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 346678999999999999999999999999887531 12 2 24699999999999999998888877
Q ss_pred eechhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------------HhhhCCC
Q 003316 80 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------------ALGERIR 140 (831)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------------~~~~~~~ 140 (831)
. ++.+||||||||.+|..++.++++.+|+||||||+.+ +...+.+
T Consensus 83 ~----------------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~ 146 (446)
T PTZ00141 83 P----------------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVK 146 (446)
T ss_pred C----------------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCC
Confidence 4 8899999999999999999999999999999999963 1223556
Q ss_pred cE-EEEecCcchhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhh
Q 003316 141 PV-LTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 219 (831)
Q Consensus 141 ~i-i~iNKiD~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 219 (831)
.+ +++||||+. ..+.. .++|.++.+++...+..... .+..-++...|+..|.+..-
T Consensus 147 ~iiv~vNKmD~~----~~~~~--~~~~~~i~~~i~~~l~~~g~--------~~~~~~~ipiSa~~g~ni~~--------- 203 (446)
T PTZ00141 147 QMIVCINKMDDK----TVNYS--QERYDEIKKEVSAYLKKVGY--------NPEKVPFIPISGWQGDNMIE--------- 203 (446)
T ss_pred eEEEEEEccccc----cchhh--HHHHHHHHHHHHHHHHhcCC--------CcccceEEEeecccCCCccc---------
Confidence 55 699999965 32211 23466666666666543211 11111122223322211100
Q ss_pred hcCCChHHHHHHhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHH
Q 003316 220 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 299 (831)
Q Consensus 220 ~~~i~~~~l~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~ 299 (831)
... .. .|
T Consensus 204 -----~~~--~~------------~W------------------------------------------------------ 210 (446)
T PTZ00141 204 -----KSD--NM------------PW------------------------------------------------------ 210 (446)
T ss_pred -----CCC--CC------------cc------------------------------------------------------
Confidence 000 00 01
Q ss_pred HhHHHHHHHHHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCc
Q 003316 300 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGR 379 (831)
Q Consensus 300 ~~~~~l~~~i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~ 379 (831)
.-. ..|++++..+ +.|. -+.+.|+.+.|..++..+..|.
T Consensus 211 --------------y~G-~tL~~~l~~~-~~~~-------------------------~~~~~p~r~~I~~v~~v~g~Gt 249 (446)
T PTZ00141 211 --------------YKG-PTLLEALDTL-EPPK-------------------------RPVDKPLRLPLQDVYKIGGIGT 249 (446)
T ss_pred --------------cch-HHHHHHHhCC-CCCC-------------------------cCCCCCeEEEEEEEEecCCceE
Confidence 000 1345554333 3331 0124788888988887776675
Q ss_pred eeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eee
Q 003316 380 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLT 456 (831)
Q Consensus 380 ~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl~ 456 (831)
+..+||.+|+|+.||.|.++..+ . ..+|..|... ..++++|.|||.+++. +++....+.| .|+
T Consensus 250 -vv~G~V~~G~l~~Gd~v~i~P~~----~-----~~~VksI~~~----~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~ 315 (446)
T PTZ00141 250 -VPVGRVETGILKPGMVVTFAPSG----V-----TTEVKSVEMH----HEQLAEAVPGDNVGFNVKNVSVKDIKRGYVAS 315 (446)
T ss_pred -EEEEEEEcceEecCCEEEEccCC----c-----EEEEEEEEec----CcccCEECCCCEEEEEECCCCHHHcCCceEEe
Confidence 88999999999999999986421 1 2678887643 3578999999998875 4433334667 666
Q ss_pred cC
Q 003316 457 NE 458 (831)
Q Consensus 457 ~~ 458 (831)
+.
T Consensus 316 ~~ 317 (446)
T PTZ00141 316 DS 317 (446)
T ss_pred cC
Confidence 54
No 42
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.96 E-value=8.9e-28 Score=248.29 Aligned_cols=185 Identities=43% Similarity=0.723 Sum_probs=158.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCccc---ccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ---EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~---~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
|||+|+||+|+|||||+++|++.++.+.+ ...+..+++|..++|++||+|+.....++.|.. .++.
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~-----------~~~~ 69 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPD-----------SKGK 69 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEc-----------CCCC
Confidence 79999999999999999999999998863 234446789999999999999999999988852 1234
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 164 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~~ 164 (831)
.+.++++|||||.+|..++..+++.+|++|+|+|+.+ +...+.|.++|+||+|+...++..+.++.++
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~ 149 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYF 149 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHH
Confidence 6899999999999999999999999999999999976 1223455577999999987777788889999
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHh
Q 003316 165 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 217 (831)
Q Consensus 165 ~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 217 (831)
++.++++++|..+..+..++ .+.|.|..+||.|+|+..||+|++++|+.+|
T Consensus 150 ~l~~~i~~~n~~~~~~~~~~--~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~ 200 (213)
T cd04167 150 KLRHIIDEVNNIIASFSTTL--SFLFSPENGNVCFASSKFGFCFTLESFAKKY 200 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCC--ceEeccCCCeEEEEecCCCeEEecHHHHhhh
Confidence 99999999999987654332 3678999999999999999999999999887
No 43
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.95 E-value=9.1e-27 Score=276.55 Aligned_cols=302 Identities=18% Similarity=0.278 Sum_probs=206.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+|+||+|||||||+++|... .+. ....+|||++.+..++.|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~--~v~--------------~~e~~GIT~~iga~~v~~~---------------- 335 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKT--NVA--------------AGEAGGITQHIGAYQVETN---------------- 335 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC--Ccc--------------ccccCceeeeccEEEEEEC----------------
Confidence 45689999999999999999999431 111 1124689998888888875
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 164 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~~ 164 (831)
++.++|||||||.+|...+.++++.+|++|||||+.+ +...+.|.|||+||||++ +++++++..
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~----~a~~e~V~~ 411 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKP----GANPDRVKQ 411 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECcccc----ccCHHHHHH
Confidence 6899999999999999999999999999999999975 122356667799999998 777554443
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCCc
Q 003316 165 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 244 (831)
Q Consensus 165 ~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~~ 244 (831)
.+.+ .+.....|. +.+ ++...|+..|++
T Consensus 412 eL~~----~~~~~e~~g----~~v-------p~vpvSAktG~G------------------------------------- 439 (787)
T PRK05306 412 ELSE----YGLVPEEWG----GDT-------IFVPVSAKTGEG------------------------------------- 439 (787)
T ss_pred HHHH----hcccHHHhC----CCc-------eEEEEeCCCCCC-------------------------------------
Confidence 3322 111111000 000 011112211100
Q ss_pred eeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHHHHH
Q 003316 245 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 324 (831)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~I 324 (831)
+ ..|++++
T Consensus 440 -------------------------------------I-----------------------------------~eLle~I 447 (787)
T PRK05306 440 -------------------------------------I-----------------------------------DELLEAI 447 (787)
T ss_pred -------------------------------------c-----------------------------------hHHHHhh
Confidence 0 0111111
Q ss_pred HhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003316 325 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 404 (831)
Q Consensus 325 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~ 404 (831)
... + +... ..+++++|+.++||++..+++.|. ++++||++|+|+.||.|++.
T Consensus 448 ~~~--~--e~~~-------------------l~~~~~~~~~g~V~es~~dkg~G~-v~~v~V~sGtLk~Gd~vv~g---- 499 (787)
T PRK05306 448 LLQ--A--EVLE-------------------LKANPDRPARGTVIEAKLDKGRGP-VATVLVQNGTLKVGDIVVAG---- 499 (787)
T ss_pred hhh--h--hhhh-------------------cccCCCCCcEEEEEEEEEcCCCeE-EEEEEEecCeEecCCEEEEC----
Confidence 110 0 0000 013456889999999999888887 99999999999999999851
Q ss_pred CCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCC----------------------
Q 003316 405 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV---------------------- 461 (831)
Q Consensus 405 ~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~---------------------- 461 (831)
.+.++++.|.+....++++|.|||+|+|.||+++ ..+| ||+...+.
T Consensus 500 ----------~~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~-p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~ 568 (787)
T PRK05306 500 ----------TTYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGV-PQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQ 568 (787)
T ss_pred ----------CcEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCC-CCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2577888899888889999999999999999875 3578 77733210
Q ss_pred Ccccccccccc----CCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCCcEEEEecchHH
Q 003316 462 DAHPIRAMKFS----VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELH 525 (831)
Q Consensus 462 ~~~~~~~~~~~----~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElH 525 (831)
....+..+..+ ..+.+.+.|++...+..++|..+|.+|..+++.+.| +-+|.|.+.
T Consensus 569 ~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i--------~~~~vG~it 628 (787)
T PRK05306 569 QRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNI--------IHSGVGAIT 628 (787)
T ss_pred cccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEE--------EeeccCCCC
Confidence 00112222111 123689999999999999999999999999999877 445666653
No 44
>PLN03127 Elongation factor Tu; Provisional
Probab=99.95 E-value=4.9e-26 Score=258.07 Aligned_cols=277 Identities=21% Similarity=0.339 Sum_probs=181.2
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccC
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (831)
..+..+||+++||+|||||||+++|........+........+|..++|++||+|++++...+.+.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-------------- 122 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA-------------- 122 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC--------------
Confidence 346789999999999999999999964421111100111125899999999999999987776653
Q ss_pred CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCCc-EEEEecCcchhhccCCCHHH
Q 003316 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIRP-VLTVNKMDRCFLELQVDGEE 161 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~~-ii~iNKiD~~~~~~~~~~~~ 161 (831)
+++++|||||||.+|..++.+++..+|++++|||+.+ .+ ..+.|. |+++||||+. + .++
T Consensus 123 --~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv----~--~~~ 194 (447)
T PLN03127 123 --KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV----D--DEE 194 (447)
T ss_pred --CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC----C--HHH
Confidence 6799999999999999999999999999999999975 22 234553 4589999987 4 223
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcC
Q 003316 162 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 241 (831)
Q Consensus 162 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~ 241 (831)
.++.+. ++++..+..+..+. ..+ ++...|+..++
T Consensus 195 ~~~~i~---~~i~~~l~~~~~~~-~~v-------piip~Sa~sa~----------------------------------- 228 (447)
T PLN03127 195 LLELVE---MELRELLSFYKFPG-DEI-------PIIRGSALSAL----------------------------------- 228 (447)
T ss_pred HHHHHH---HHHHHHHHHhCCCC-Ccc-------eEEEeccceee-----------------------------------
Confidence 333222 23333332111000 001 11112221100
Q ss_pred CCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHH
Q 003316 242 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 321 (831)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 321 (831)
+ +. + .....+ ....|+
T Consensus 229 ~---------g~-----------------------n-------------~~~~~~-------------------~i~~Ll 244 (447)
T PLN03127 229 Q---------GT-----------------------N-------------DEIGKN-------------------AILKLM 244 (447)
T ss_pred c---------CC-----------------------C-------------cccccc-------------------hHHHHH
Confidence 0 00 0 000000 014678
Q ss_pred HHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcC
Q 003316 322 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 401 (831)
Q Consensus 322 d~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~ 401 (831)
+++.+++|.|.. +.++||.+.|..++..+..|. +..+||.+|+++.||.|++++
T Consensus 245 ~~l~~~lp~p~r-------------------------~~~~pfr~~I~~vf~v~g~Gt-VvtG~v~~G~i~~Gd~v~i~p 298 (447)
T PLN03127 245 DAVDEYIPEPVR-------------------------VLDKPFLMPIEDVFSIQGRGT-VATGRVEQGTIKVGEEVEIVG 298 (447)
T ss_pred HHHHHhCCCCCc-------------------------ccccceEeeEEEEEEcCCceE-EEEEEEEccEEecCCEEEEcc
Confidence 888888997721 134688888888887777775 899999999999999999886
Q ss_pred CCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecC
Q 003316 402 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 458 (831)
Q Consensus 402 ~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~ 458 (831)
++.. +. ...+|..|... ..++++|.|||.+++ .|++....+.| .|+++
T Consensus 299 ~~~~-g~----~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 299 LRPG-GP----LKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred cCCC-Cc----EEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 4311 11 12688888654 346899999999886 46654444677 77764
No 45
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.95 E-value=4.4e-26 Score=257.12 Aligned_cols=115 Identities=30% Similarity=0.377 Sum_probs=100.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCccccc----------CCc-------eEEecCchhhheeceeeeeceeEEEEeech
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRQDEAERGITIKSTGISLYYEMTD 83 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~g~-------~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~ 83 (831)
||+++||+|||||||+++||+.+|.+.+.. .|+ .+++|+.++|++||+|++.+...+.|.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 799999999999999999999999987732 343 368999999999999999999888885
Q ss_pred hhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCCc-EEEEecCcc
Q 003316 84 AALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIRP-VLTVNKMDR 150 (831)
Q Consensus 84 ~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~~-ii~iNKiD~ 150 (831)
+++++|||||||.+|..++..++..+|+||+|||+.+ .+ ..+.++ ++|+||||+
T Consensus 79 -------------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 79 -------------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred -------------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 7899999999999999999999999999999999975 12 224555 459999999
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 146 ~ 146 (406)
T TIGR02034 146 V 146 (406)
T ss_pred c
Confidence 8
No 46
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.94 E-value=8.3e-26 Score=258.59 Aligned_cols=120 Identities=28% Similarity=0.370 Sum_probs=102.7
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc----------CCc-------eEEecCchhhheeceeeeeceeEEE
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRQDEAERGITIKSTGISLY 78 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~g~-------~~~~D~~~~e~~rgiTi~~~~~~~~ 78 (831)
.+...||+|+||+|||||||+++||+.+|.+.+.. .|+ .+++|+.++|++||+|++.+...+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46678999999999999999999999999987632 443 2589999999999999999888877
Q ss_pred EeechhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCc-EEEE
Q 003316 79 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRP-VLTV 145 (831)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~-ii~i 145 (831)
|. +++++|||||||.+|..++..+++.+|+||+|||+.+ +...+.++ |+++
T Consensus 104 ~~----------------~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvv 167 (474)
T PRK05124 104 TE----------------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAV 167 (474)
T ss_pred cC----------------CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEE
Confidence 74 7799999999999999999999999999999999975 11223455 5599
Q ss_pred ecCcch
Q 003316 146 NKMDRC 151 (831)
Q Consensus 146 NKiD~~ 151 (831)
||||+.
T Consensus 168 NKiD~~ 173 (474)
T PRK05124 168 NKMDLV 173 (474)
T ss_pred Eeeccc
Confidence 999987
No 47
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.94 E-value=6.2e-26 Score=258.45 Aligned_cols=273 Identities=26% Similarity=0.407 Sum_probs=185.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc----------CCc-----eEEecCchhhheeceeeeeceeEEEEee
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLYYEM 81 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~e~~rgiTi~~~~~~~~~~~ 81 (831)
+...||+++||+|||||||+++|++..|.+.+.. .|. .+++|+.++|++||+|++.....+.+.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~- 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD- 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC-
Confidence 5578999999999999999999999999987641 232 357999999999999999999888875
Q ss_pred chhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hh-hhCCCc-EEEEe
Q 003316 82 TDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------AL-GERIRP-VLTVN 146 (831)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~-~~~~~~-ii~iN 146 (831)
++.++|||||||.+|..++..+++.+|++|+|||+.+ .+ ..+.++ ++++|
T Consensus 83 ---------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviN 147 (425)
T PRK12317 83 ---------------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAIN 147 (425)
T ss_pred ---------------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEE
Confidence 7899999999999999999999999999999999974 11 223454 55999
Q ss_pred cCcchhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChH
Q 003316 147 KMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDES 226 (831)
Q Consensus 147 KiD~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~ 226 (831)
|+|+. +.+.+ .+..+.++++..+..+.. .+..-++...|+..|.+..
T Consensus 148 K~Dl~----~~~~~----~~~~~~~~i~~~l~~~g~--------~~~~~~ii~iSA~~g~gi~----------------- 194 (425)
T PRK12317 148 KMDAV----NYDEK----RYEEVKEEVSKLLKMVGY--------KPDDIPFIPVSAFEGDNVV----------------- 194 (425)
T ss_pred ccccc----cccHH----HHHHHHHHHHHHHHhhCC--------CcCcceEEEeecccCCCcc-----------------
Confidence 99998 54322 233444444444432210 0000122223443221110
Q ss_pred HHHHHhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHH
Q 003316 227 KMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALM 306 (831)
Q Consensus 227 ~l~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~ 306 (831)
.+... -.
T Consensus 195 ~~~~~-----------~~-------------------------------------------------------------- 201 (425)
T PRK12317 195 KKSEN-----------MP-------------------------------------------------------------- 201 (425)
T ss_pred ccccC-----------CC--------------------------------------------------------------
Confidence 00000 00
Q ss_pred HHHHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEE
Q 003316 307 KRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 386 (831)
Q Consensus 307 ~~i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV 386 (831)
|... ..|++++. .+|.|.. +.+.|+.+.|..++..+..|. +..+||
T Consensus 202 ------wy~g-~~L~~~l~-~~~~~~~-------------------------~~~~p~r~~i~~~~~~~g~G~-vv~G~v 247 (425)
T PRK12317 202 ------WYNG-PTLLEALD-NLKPPEK-------------------------PTDKPLRIPIQDVYSISGVGT-VPVGRV 247 (425)
T ss_pred ------cccH-HHHHHHHh-cCCCCcc-------------------------ccCCCcEEEEEEEEeeCCCeE-EEEEEE
Confidence 1100 24555543 3555510 135788888888887777775 889999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecC
Q 003316 387 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 458 (831)
Q Consensus 387 ~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~ 458 (831)
.+|+|+.||.|+++..+ . ..+|..|... ..++++|.|||.|++ .|++....+.| .|+++
T Consensus 248 ~~G~v~~Gd~v~i~P~~----~-----~~~VksI~~~----~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~ 309 (425)
T PRK12317 248 ETGVLKVGDKVVFMPAG----V-----VGEVKSIEMH----HEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHP 309 (425)
T ss_pred eeccEecCCEEEECCCC----C-----eEEEEEEEEC----CcccCEECCCCeEEEEECCCCHHHccCccEecCC
Confidence 99999999999986432 1 2578887642 467999999999876 35543333567 66654
No 48
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.94 E-value=1.5e-25 Score=255.27 Aligned_cols=276 Identities=23% Similarity=0.341 Sum_probs=186.3
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc----------cCCc-----eEEecCchhhheeceeeeeceeEEE
Q 003316 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLY 78 (831)
Q Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~e~~rgiTi~~~~~~~~ 78 (831)
...+..+||+++||+|||||||+++|++.+|.+.+. ..|. .+.+|+.++|++||+|++.+...+.
T Consensus 2 ~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~ 81 (426)
T TIGR00483 2 AKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE 81 (426)
T ss_pred CCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc
Confidence 445678999999999999999999999999988642 1232 3579999999999999999988887
Q ss_pred EeechhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--------------Hhh-hCCCcE-
Q 003316 79 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--------------ALG-ERIRPV- 142 (831)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~--------------~~~-~~~~~i- 142 (831)
+. ++.++|+|||||.+|...+..+++.+|++|+|||+.+ ... .+.+++
T Consensus 82 ~~----------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iI 145 (426)
T TIGR00483 82 TD----------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLI 145 (426)
T ss_pred cC----------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEE
Confidence 74 7899999999999999999999999999999999975 111 234554
Q ss_pred EEEecCcchhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcC
Q 003316 143 LTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG 222 (831)
Q Consensus 143 i~iNKiD~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~ 222 (831)
+++||+|+. +.+.+ .+..+.++++..+..+.. .+....+...|+..|++..-
T Consensus 146 VviNK~Dl~----~~~~~----~~~~~~~ei~~~~~~~g~--------~~~~~~~i~iSA~~g~ni~~------------ 197 (426)
T TIGR00483 146 VAINKMDSV----NYDEE----EFEAIKKEVSNLIKKVGY--------NPDTVPFIPISAWNGDNVIK------------ 197 (426)
T ss_pred EEEEChhcc----CccHH----HHHHHHHHHHHHHHHcCC--------CcccceEEEeeccccccccc------------
Confidence 599999997 65533 233334444444432110 00001122233333321100
Q ss_pred CChHHHHHHhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhH
Q 003316 223 VDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMG 302 (831)
Q Consensus 223 i~~~~l~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~ 302 (831)
.+.. .|.|
T Consensus 198 -----------------------------------~~~~---~~w~---------------------------------- 205 (426)
T TIGR00483 198 -----------------------------------KSEN---TPWY---------------------------------- 205 (426)
T ss_pred -----------------------------------cccC---Cccc----------------------------------
Confidence 0000 0000
Q ss_pred HHHHHHHHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeE
Q 003316 303 KALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFA 382 (831)
Q Consensus 303 ~~l~~~i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~ 382 (831)
- -..|++++.+ +|.|. .+.+.|+.++|..++..+..|. ++
T Consensus 206 ------------~-g~~l~~~l~~-~~~~~-------------------------~~~~~p~r~~i~~v~~~~g~G~-vv 245 (426)
T TIGR00483 206 ------------K-GKTLLEALDA-LEPPE-------------------------KPTDKPLRIPIQDVYSITGVGT-VP 245 (426)
T ss_pred ------------c-chHHHHHHhc-CCCCC-------------------------CccCCCcEEEEEEEEecCCCeE-EE
Confidence 0 0245666643 44441 0135789999999888777776 89
Q ss_pred EEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecC
Q 003316 383 FGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 458 (831)
Q Consensus 383 ~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~ 458 (831)
.+||.+|+|+.||.|.+...+ . ..+|..|... ..++++|.|||.+++ .|++....+.| .|+++
T Consensus 246 ~G~v~~G~i~~gd~v~i~P~~----~-----~~~VksI~~~----~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~ 311 (426)
T TIGR00483 246 VGRVETGVLKPGDKVVFEPAG----V-----SGEVKSIEMH----HEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHP 311 (426)
T ss_pred EEEEccceeecCCEEEECCCC----c-----EEEEEEEEEC----CcccCEEcCCCEEEEEECCCChhhcccceEEecC
Confidence 999999999999999986422 1 2578888643 357899999999887 45543334667 66654
No 49
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=4.1e-26 Score=235.39 Aligned_cols=277 Identities=22% Similarity=0.353 Sum_probs=181.9
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccC
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (831)
..+...||+-+||+|||||||+-++...-........-+..-.|+-++|+.|||||+++.+.++..
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa-------------- 115 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETA-------------- 115 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeecc--------------
Confidence 334578999999999999999998843211110000001124688999999999999877655443
Q ss_pred CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH----------Hhhh--CCCcEE-EEecCcchhhccCCCHHH
Q 003316 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------ALGE--RIRPVL-TVNKMDRCFLELQVDGEE 161 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~----------~~~~--~~~~ii-~iNKiD~~~~~~~~~~~~ 161 (831)
.+++--+|||||.||...++++..++|||||||.|++ .+.+ +++.|+ |+||.|.. +. +|
T Consensus 116 --~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V----~d--~e 187 (449)
T KOG0460|consen 116 --KRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLV----DD--PE 187 (449)
T ss_pred --ccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEeccccc----CC--HH
Confidence 6678889999999999999999999999999999998 2333 455554 99999977 32 22
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcC
Q 003316 162 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 241 (831)
Q Consensus 162 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~ 241 (831)
..+-.. -+++..|..|..+ -...+|..||++- + |-|
T Consensus 188 ~leLVE---mE~RElLse~gf~--------Gd~~PvI~GSAL~-------------------------A-Leg------- 223 (449)
T KOG0460|consen 188 MLELVE---MEIRELLSEFGFD--------GDNTPVIRGSALC-------------------------A-LEG------- 223 (449)
T ss_pred HHHHHH---HHHHHHHHHcCCC--------CCCCCeeecchhh-------------------------h-hcC-------
Confidence 222111 1345555443321 1122455555520 0 000
Q ss_pred CCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHH
Q 003316 242 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 321 (831)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 321 (831)
.+++. |. + .+..||
T Consensus 224 -----------------------------------~~pei--------g~---------------~--------aI~kLl 237 (449)
T KOG0460|consen 224 -----------------------------------RQPEI--------GL---------------E--------AIEKLL 237 (449)
T ss_pred -----------------------------------CCccc--------cH---------------H--------HHHHHH
Confidence 00000 00 0 125799
Q ss_pred HHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcC
Q 003316 322 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 401 (831)
Q Consensus 322 d~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~ 401 (831)
|++..|+|-|. -+-+.||+.-|-.++.-+.+|. ++.+|+-.|+|++|+.+-+.|
T Consensus 238 davDsyip~P~-------------------------R~~~~pFl~pie~vfsI~GRGT-VvtGrlERG~lKkG~e~eivG 291 (449)
T KOG0460|consen 238 DAVDSYIPTPE-------------------------RDLDKPFLLPIEDVFSIPGRGT-VVTGRLERGVLKKGDEVEIVG 291 (449)
T ss_pred HHHhccCCCcc-------------------------cccCCCceeehhheeeecCCce-EEEEEEeecccccCCEEEEec
Confidence 99999999993 1235788877777777788887 999999999999999999987
Q ss_pred CCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecCCC
Q 003316 402 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEKE 460 (831)
Q Consensus 402 ~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~~~ 460 (831)
.|.+- ...|+.|-.+ ...+++|.|||-+++ +|++....+.| .++.+..
T Consensus 292 ~~~~l-------kttvtgiemF----~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 292 HNKTL-------KTTVTGIEMF----RKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred cCcce-------eeEeehHHHH----HHHHHhcccccceehhhhcCCHHHHhcccEEecCCc
Confidence 65221 1234433221 234799999999864 57776555777 6665543
No 50
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.93 E-value=4.5e-24 Score=248.54 Aligned_cols=292 Identities=20% Similarity=0.289 Sum_probs=192.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+.++|+++||+|||||||+++|.... +. .+..+|+|++.....+.|. +.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~--v~--------------~~e~~GIT~~ig~~~v~~~---------------~~ 134 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK--VA--------------QGEAGGITQHIGAYHVENE---------------DG 134 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC--cc--------------cccCCceeecceEEEEEEC---------------CC
Confidence 45799999999999999999994321 11 1123578888887777774 13
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHHHH
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 165 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~~~ 165 (831)
..++|||||||.+|...+.++++.+|++|+|+|+.+ +...+.|.++++||+|+. +++++++.+.
T Consensus 135 ~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~----~~~~e~v~~~ 210 (587)
T TIGR00487 135 KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKP----EANPDRVKQE 210 (587)
T ss_pred cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccc----cCCHHHHHHH
Confidence 389999999999999999999999999999999885 112345666799999998 7776554433
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCCce
Q 003316 166 FQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKW 245 (831)
Q Consensus 166 l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~~~ 245 (831)
+.+ .+.....|. +.. ++.-.|+..|.
T Consensus 211 L~~----~g~~~~~~~----~~~-------~~v~iSAktGe--------------------------------------- 236 (587)
T TIGR00487 211 LSE----YGLVPEDWG----GDT-------IFVPVSALTGD--------------------------------------- 236 (587)
T ss_pred HHH----hhhhHHhcC----CCc-------eEEEEECCCCC---------------------------------------
Confidence 321 111110000 000 00001111100
Q ss_pred eecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHHHHHH
Q 003316 246 TSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMI 325 (831)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~I~ 325 (831)
.+ ..|++.+.
T Consensus 237 -----------------------------------GI-----------------------------------~eLl~~I~ 246 (587)
T TIGR00487 237 -----------------------------------GI-----------------------------------DELLDMIL 246 (587)
T ss_pred -----------------------------------Ch-----------------------------------HHHHHhhh
Confidence 00 01111111
Q ss_pred h--cCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCC
Q 003316 326 F--HLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPN 403 (831)
Q Consensus 326 ~--~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n 403 (831)
. .++.+ ..++++|+.++|+++..++..|. ++++||++|+|+.||.|.+.. .
T Consensus 247 ~~~~~~~l-------------------------~~~~~~~~~~~V~ev~~~~g~G~-v~~~~V~~GtL~~Gd~iv~~~-~ 299 (587)
T TIGR00487 247 LQSEVEEL-------------------------KANPNGQASGVVIEAQLDKGRGP-VATVLVQSGTLRVGDIVVVGA-A 299 (587)
T ss_pred hhhhhccc-------------------------cCCCCCCceeEEEEEEEeCCCcE-EEEEEEEeCEEeCCCEEEECC-C
Confidence 0 00000 12456899999999998888886 999999999999999998632 1
Q ss_pred CCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCC---------------------
Q 003316 404 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV--------------------- 461 (831)
Q Consensus 404 ~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~--------------------- 461 (831)
. .||..|+..+ ...+++|.||++|.|.|++.. ..+| +|.-....
T Consensus 300 -----~-----~kVr~l~~~~---g~~v~~a~~g~~v~i~Gl~~~-p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~ 365 (587)
T TIGR00487 300 -----Y-----GRVRAMIDEN---GKSVKEAGPSKPVEILGLSDV-PAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSR 365 (587)
T ss_pred -----c-----cEEEEEECCC---CCCCCEECCCCEEEEeCCCCC-CCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 0 3666655544 456899999999999999874 3567 66522110
Q ss_pred -Ccccccccccc----CCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEE
Q 003316 462 -DAHPIRAMKFS----VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCS 509 (831)
Q Consensus 462 -~~~~~~~~~~~----~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~ 509 (831)
....+..+..+ ..|.+.+.|++...+..++|.++|.++..++|++.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~ 418 (587)
T TIGR00487 366 SVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI 418 (587)
T ss_pred ccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE
Confidence 00111211111 2488999999999999999999999999999999874
No 51
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=6.6e-25 Score=222.65 Aligned_cols=276 Identities=23% Similarity=0.392 Sum_probs=178.8
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccc
Q 003316 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 91 (831)
Q Consensus 12 ~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (831)
.....+..-||+.+||+|||||||+.++............-.....|..|+|++|||||+++.+.++..
T Consensus 5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~----------- 73 (394)
T COG0050 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA----------- 73 (394)
T ss_pred hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC-----------
Confidence 345567789999999999999999999954322111100111224678999999999999988766653
Q ss_pred ccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH----------Hhh--hCCCcEE-EEecCcchhhccCCC
Q 003316 92 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------ALG--ERIRPVL-TVNKMDRCFLELQVD 158 (831)
Q Consensus 92 ~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~----------~~~--~~~~~ii-~iNKiD~~~~~~~~~ 158 (831)
+.++-.+|||||.||..+++++..++|+|||||.|.+ .+. -+.|-|+ |+||.|+. + |
T Consensus 74 -----~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmv----d-d 143 (394)
T COG0050 74 -----NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMV----D-D 143 (394)
T ss_pred -----CceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccccc----C-c
Confidence 7789999999999999999999999999999999998 222 3455665 99999988 4 2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhccccc
Q 003316 159 GEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 238 (831)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~ 238 (831)
++. +...-.+++.+|+.|..+ + ..-+|+.+|++. .
T Consensus 144 -~el---lelVemEvreLLs~y~f~--g------d~~Pii~gSal~--------------------------a------- 178 (394)
T COG0050 144 -EEL---LELVEMEVRELLSEYGFP--G------DDTPIIRGSALK--------------------------A------- 178 (394)
T ss_pred -HHH---HHHHHHHHHHHHHHcCCC--C------CCcceeechhhh--------------------------h-------
Confidence 222 222223455666544311 1 111333333310 0
Q ss_pred CcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHH
Q 003316 239 DPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASS 318 (831)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~ 318 (831)
.+++.. |...+.
T Consensus 179 ------------------------------------le~~~~--------------------------------~~~~i~ 190 (394)
T COG0050 179 ------------------------------------LEGDAK--------------------------------WEAKIE 190 (394)
T ss_pred ------------------------------------hcCCcc--------------------------------hHHHHH
Confidence 000000 111135
Q ss_pred HHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEE
Q 003316 319 ALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVR 398 (831)
Q Consensus 319 ~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~ 398 (831)
.|||++.+|+|.|. .+.+.||.+-|-.++.-..+|. .+++||-.|+|+.|+.+-
T Consensus 191 eLm~avd~yip~Pe-------------------------r~~dkPflmpvEdvfsIsgrgt-vvtGrVeRG~lkvg~eve 244 (394)
T COG0050 191 ELMDAVDSYIPTPE-------------------------RDIDKPFLMPVEDVFSISGRGT-VVTGRVERGILKVGEEVE 244 (394)
T ss_pred HHHHHHHhcCCCCC-------------------------CcccccccccceeeEEEcCcee-EEEEEEeeeeeccCCEEE
Confidence 78999999999993 1245788888877777677776 999999999999999999
Q ss_pred EcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecC
Q 003316 399 IMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 458 (831)
Q Consensus 399 v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~ 458 (831)
+.|-. .+ ++ ..+..+-. -+...++..|||-+++ +|.+.-....| .|+.+
T Consensus 245 ivG~~-~~-~k-----ttvtgvem----frk~ld~~~AGdnvg~llRg~~r~~veRGqvLakp 296 (394)
T COG0050 245 IVGIK-ET-QK-----TTVTGVEM----FRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKP 296 (394)
T ss_pred Eeccc-cc-ce-----eEEEhHHH----HHHHHhccccCCCcceEEEeccccceecceEeecC
Confidence 87632 11 11 12221110 1233678889987654 45443323445 55443
No 52
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.92 E-value=5.9e-24 Score=240.47 Aligned_cols=122 Identities=24% Similarity=0.272 Sum_probs=89.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechh-----h---hh-
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-----A---LK- 87 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~-----~---~~- 87 (831)
+...|||++||+|||||||+.+| .| ..+|..++|++||||++.+..++.+...+. . +.
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aL-----------tg--~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~ 98 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKAL-----------SG--VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGS 98 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHH-----------hC--CCcccchhhHHhCCchhccccccccccCcccCCcccccccCC
Confidence 44688999999999999999999 34 246788999999999998887764310000 0 00
Q ss_pred ----cccccc----CCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------HhhhCCCc-EEEE
Q 003316 88 ----SYRGER----QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGERIRP-VLTV 145 (831)
Q Consensus 88 ----~~~~~~----~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~~~~~-ii~i 145 (831)
+..+.. ..-...++|||||||.+|..++.+++..+|+|+|||||.+ +...+.++ |+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl 178 (460)
T PTZ00327 99 SKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178 (460)
T ss_pred CcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence 000000 0013579999999999999999999999999999999975 11234555 5599
Q ss_pred ecCcch
Q 003316 146 NKMDRC 151 (831)
Q Consensus 146 NKiD~~ 151 (831)
||||+.
T Consensus 179 NKiDlv 184 (460)
T PTZ00327 179 NKIDLV 184 (460)
T ss_pred eccccc
Confidence 999987
No 53
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.3e-24 Score=235.86 Aligned_cols=276 Identities=24% Similarity=0.357 Sum_probs=192.4
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc----------cCCc-----eEEecCchhhheeceeeeeceeEEEE
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLYY 79 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~e~~rgiTi~~~~~~~~~ 79 (831)
.++...|..++||+|+|||||..+|||..|.|.++ ..|. .|++|...+||+||+||+.+.+.|.-
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 34567899999999999999999999999999764 2343 68999999999999999999888764
Q ss_pred eechhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------------Hhhh-CC-
Q 003316 80 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------------ALGE-RI- 139 (831)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------------~~~~-~~- 139 (831)
+.+.++|+|+|||.||..+++.+...+|.|||||||+- .++. ++
T Consensus 253 ----------------~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~ 316 (603)
T KOG0458|consen 253 ----------------KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGIS 316 (603)
T ss_pred ----------------CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcc
Confidence 38899999999999999999999999999999999996 1221 33
Q ss_pred CcEEEEecCcchhhccCCCHHHHHHHHHHHHHHhhhhhh-hccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhh
Q 003316 140 RPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMA-TYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 218 (831)
Q Consensus 140 ~~ii~iNKiD~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~ 218 (831)
..||+|||||.. +++ .++|.+|...++.+|. .+.... ..+.|-|..| +.|-..+-
T Consensus 317 qlivaiNKmD~V----~Ws----q~RF~eIk~~l~~fL~~~~gf~e-s~v~FIPiSG-------l~GeNL~k-------- 372 (603)
T KOG0458|consen 317 QLIVAINKMDLV----SWS----QDRFEEIKNKLSSFLKESCGFKE-SSVKFIPISG-------LSGENLIK-------- 372 (603)
T ss_pred eEEEEeeccccc----Ccc----HHHHHHHHHHHHHHHHHhcCccc-CCcceEeccc-------ccCCcccc--------
Confidence 336699999999 888 5578889988888883 322111 1234445333 22211100
Q ss_pred hhcCCChHHHHHHhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHH
Q 003316 219 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 298 (831)
Q Consensus 219 ~~~~i~~~~l~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el 298 (831)
+ + ++..+-++-++
T Consensus 373 ----~-------------------------~----------------------------~~~~l~~WY~G---------- 385 (603)
T KOG0458|consen 373 ----I-------------------------E----------------------------QENELSQWYKG---------- 385 (603)
T ss_pred ----c-------------------------c----------------------------cchhhhhhhcC----------
Confidence 0 0 00011111111
Q ss_pred HHhHHHHHHHHHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCC
Q 003316 299 ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 378 (831)
Q Consensus 299 ~~~~~~l~~~i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g 378 (831)
..||+.|-. +=.|- + +-+.||++-|..++..+..+
T Consensus 386 -------------------p~LL~~id~-~~~p~------------~-------------~~~kPl~ltIsdi~~~~~~~ 420 (603)
T KOG0458|consen 386 -------------------PTLLSQIDS-FKIPE------------R-------------PIDKPLRLTISDIYPLPSSG 420 (603)
T ss_pred -------------------ChHHHHHhh-ccCCC------------C-------------cccCCeEEEhhheeecCCCe
Confidence 145555544 22221 0 02359999999988877655
Q ss_pred ceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-ee
Q 003316 379 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TL 455 (831)
Q Consensus 379 ~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl 455 (831)
+..+|||-||.+++||.||++.+. . ...|..|-. ...+...+-|||-|.+. |+....++.| ++
T Consensus 421 -~~i~gkiesG~iq~gqkl~i~~s~-----e----~~~vk~l~~----~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~ 486 (603)
T KOG0458|consen 421 -VSISGKIESGYIQPGQKLYIMTSR-----E----DATVKGLTS----NDEPKTWAVAGDNVSLKLPGILPNLVQVGDIA 486 (603)
T ss_pred -eEEEEEEeccccccCCEEEEecCc-----c----eEEEEeeec----CCCcceeEeeCCEEEEecCccChhhcccceee
Confidence 589999999999999999997532 1 146666543 35677889999998764 5444445667 55
Q ss_pred e
Q 003316 456 T 456 (831)
Q Consensus 456 ~ 456 (831)
+
T Consensus 487 ~ 487 (603)
T KOG0458|consen 487 D 487 (603)
T ss_pred e
Confidence 5
No 54
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.92 E-value=1.2e-23 Score=247.80 Aligned_cols=306 Identities=19% Similarity=0.263 Sum_probs=194.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+.++|+|+||+|||||||+++|....... +..+|+|++.....+.|.. ++.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~----------------~e~~GiTq~i~~~~v~~~~------------~~~ 293 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ----------------KEAGGITQKIGAYEVEFEY------------KDE 293 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc----------------ccCCccccccceEEEEEEe------------cCC
Confidence 467899999999999999999996544322 2235788877766666641 123
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCCcEEEEecCcchhhccCCCHHHHHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIRPVLTVNKMDRCFLELQVDGEEAYQ 164 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~~ii~iNKiD~~~~~~~~~~~~~~~ 164 (831)
++.++|||||||.+|...+.++++.+|++|||||+.+ .+ ..+.|.|+|+||+|++ +.+.+++.+
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~----~~~~e~v~~ 369 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKA----NANTERIKQ 369 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcc----ccCHHHHHH
Confidence 5899999999999999999999999999999999876 12 2345656799999998 665443332
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCCc
Q 003316 165 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 244 (831)
Q Consensus 165 ~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~~ 244 (831)
.+.. .+.....+. +.+ ++...|+..|.
T Consensus 370 eL~~----~~ll~e~~g----~~v-------pvv~VSAktG~-------------------------------------- 396 (742)
T CHL00189 370 QLAK----YNLIPEKWG----GDT-------PMIPISASQGT-------------------------------------- 396 (742)
T ss_pred HHHH----hccchHhhC----CCc-------eEEEEECCCCC--------------------------------------
Confidence 2211 110000000 000 01111211100
Q ss_pred eeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHHHHH
Q 003316 245 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 324 (831)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~I 324 (831)
. +..|++++
T Consensus 397 ------------------------------------G-----------------------------------IdeLle~I 405 (742)
T CHL00189 397 ------------------------------------N-----------------------------------IDKLLETI 405 (742)
T ss_pred ------------------------------------C-----------------------------------HHHHHHhh
Confidence 0 01122222
Q ss_pred HhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003316 325 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 404 (831)
Q Consensus 325 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~ 404 (831)
+.+.+.+. ..+++++|+.++||++..++..|. ++++||++|+|+.||.|++.
T Consensus 406 ~~l~e~~~-----------------------lk~~~~~~~~g~V~e~~iD~~~G~-V~~~~V~sGtLr~GD~vv~g---- 457 (742)
T CHL00189 406 LLLAEIED-----------------------LKADPTQLAQGIILEAHLDKTKGP-VATILVQNGTLHIGDIIVIG---- 457 (742)
T ss_pred hhhhhhhc-----------------------ccCCCCCCceEEEEEEEEcCCCce-EEEEEEEcCEEecCCEEEEC----
Confidence 22111000 012456789999999998888887 99999999999999999852
Q ss_pred CCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCC-Cc------------------c
Q 003316 405 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV-DA------------------H 464 (831)
Q Consensus 405 ~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~-~~------------------~ 464 (831)
.+.++++.|.+....++++|.||++|+|.||+.. ..+| +|.-.... .+ .
T Consensus 458 ----------~~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~-~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~~~~ 526 (742)
T CHL00189 458 ----------TSYAKIRGMINSLGNKINLATPSSVVEIWGLSSV-PATGEHFQVFNSEKEAKLKIIKNKENNKKDTTKRI 526 (742)
T ss_pred ----------CcceEEEEEEcCCCcCccEEcCCCceEecCcccC-CCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhhccc
Confidence 1456788888888899999999999999999654 4678 55422210 00 0
Q ss_pred ccc----cccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCCcEEEEecchHH
Q 003316 465 PIR----AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELH 525 (831)
Q Consensus 465 ~~~----~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElH 525 (831)
.+. .+.....+.+.+-|.+...+-.+.+.++|.++..+. +.+ .++=+|.|.+.
T Consensus 527 ~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~--v~i------~i~~~~vG~it 583 (742)
T CHL00189 527 TLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKK--VQL------NILYASLGEVT 583 (742)
T ss_pred chHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCc--EEE------EEEEeecCCCC
Confidence 000 001112466777788888888888888888774432 222 23445666654
No 55
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.91 E-value=3.3e-23 Score=246.59 Aligned_cols=118 Identities=29% Similarity=0.371 Sum_probs=100.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc----------cCCc-------eEEecCchhhheeceeeeeceeEEEEe
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-------VRMTDTRQDEAERGITIKSTGISLYYE 80 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~----------~~g~-------~~~~D~~~~e~~rgiTi~~~~~~~~~~ 80 (831)
...||+|+||+|||||||+++|++..|.+... ..|+ .+++|..++|++||+|++.+...+.|.
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 34579999999999999999999999998743 3453 358999999999999999998888775
Q ss_pred echhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCCcE-EEEec
Q 003316 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIRPV-LTVNK 147 (831)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~~i-i~iNK 147 (831)
+.+++|||||||.+|...+..++..+|++++|||+.+ .+ ..+.+++ +++||
T Consensus 103 ----------------~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK 166 (632)
T PRK05506 103 ----------------KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNK 166 (632)
T ss_pred ----------------CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEe
Confidence 7789999999999999999999999999999999965 12 2344554 59999
Q ss_pred Ccch
Q 003316 148 MDRC 151 (831)
Q Consensus 148 iD~~ 151 (831)
||+.
T Consensus 167 ~D~~ 170 (632)
T PRK05506 167 MDLV 170 (632)
T ss_pred cccc
Confidence 9987
No 56
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.91 E-value=1e-24 Score=221.01 Aligned_cols=158 Identities=35% Similarity=0.462 Sum_probs=120.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccC--CceEEecCchhhheeceeeeeceeEEE--Eeechhhhhccccc
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLY--YEMTDAALKSYRGE 92 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~--g~~~~~D~~~~e~~rgiTi~~~~~~~~--~~~~~~~~~~~~~~ 92 (831)
+++|||+++||+|||||||+++|++..+.+.+... +..+++|..++|++||+|+..+...+. +.
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~------------ 68 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNEN------------ 68 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTES------------
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccccc------------
Confidence 47899999999999999999999999998776311 113468999999999999999999888 53
Q ss_pred cCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHH
Q 003316 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGE 160 (831)
Q Consensus 93 ~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~ 160 (831)
.+.++|||||||.+|..++.++++.+|+||+|||+.+ +...+.|.++|+||||+. ..
T Consensus 69 ----~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~----~~--- 137 (188)
T PF00009_consen 69 ----NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI----EK--- 137 (188)
T ss_dssp ----SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS----HH---
T ss_pred ----ccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch----hh---
Confidence 8999999999999999999999999999999999986 334456767799999988 33
Q ss_pred HHHHHHHHHHHHhh-hhhhhccCCCCCCeeeeecCceeeeccCcceeEE
Q 003316 161 EAYQTFQKVIENAN-VIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAF 208 (831)
Q Consensus 161 ~~~~~l~~~~~~~~-~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~ 208 (831)
.+.+.++++. .++..+..... ...++.+.|+..||++
T Consensus 138 ----~~~~~~~~~~~~l~~~~~~~~~-------~~~~vi~~Sa~~g~gi 175 (188)
T PF00009_consen 138 ----ELEEIIEEIKEKLLKEYGENGE-------EIVPVIPISALTGDGI 175 (188)
T ss_dssp ----HHHHHHHHHHHHHHHHTTSTTT-------STEEEEEEBTTTTBTH
T ss_pred ----hHHHHHHHHHHHhccccccCcc-------ccceEEEEecCCCCCH
Confidence 3444444444 22222211100 1125778899988855
No 57
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.89 E-value=6.1e-22 Score=223.47 Aligned_cols=124 Identities=29% Similarity=0.408 Sum_probs=92.4
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechh-----hhhcc
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-----ALKSY 89 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~-----~~~~~ 89 (831)
+.+...||+++||+|||||||+++| .| .++|..++|++||+|+..+...+.|..++. .+...
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L-----------~~--~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 71 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQAL-----------TG--VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTE 71 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHh-----------hC--eecccCHhHHhcCcEEEecccccccccccccCcccccccc
Confidence 4456789999999999999999999 23 358999999999999998877766632110 00000
Q ss_pred c-cc----cCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-hCCCc-EEEEecCcc
Q 003316 90 R-GE----RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-ERIRP-VLTVNKMDR 150 (831)
Q Consensus 90 ~-~~----~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-~~~~~-ii~iNKiD~ 150 (831)
. .. .....+.++|+|||||.+|..++.+++..+|++++|||+.+ .+. .+.++ ++++||+|+
T Consensus 72 ~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 72 PKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred ccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 0 00 00114689999999999999999999999999999999983 222 23444 569999998
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 152 ~ 152 (411)
T PRK04000 152 V 152 (411)
T ss_pred c
Confidence 7
No 58
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.89 E-value=6.8e-23 Score=208.04 Aligned_cols=155 Identities=23% Similarity=0.332 Sum_probs=111.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..||+++||+|||||||+++|++......+........+|+.++|++||+|++++...+.|. +.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~~ 65 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA----------------NR 65 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC----------------Ce
Confidence 36999999999999999999998754222111111247999999999999999988877764 78
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCCcE-EEEecCcchhhccCCCHHHHHHH
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIRPV-LTVNKMDRCFLELQVDGEEAYQT 165 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~~i-i~iNKiD~~~~~~~~~~~~~~~~ 165 (831)
+++|||||||.+|..++.++++.+|+|++|||+.+ .+ ..+.|++ +|+||||+. .. ++.
T Consensus 66 ~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~----~~--~~~--- 136 (195)
T cd01884 66 HYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV----DD--EEL--- 136 (195)
T ss_pred EEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC----Cc--HHH---
Confidence 99999999999999999999999999999999976 22 2345544 699999986 31 222
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCccee
Q 003316 166 FQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGW 206 (831)
Q Consensus 166 l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~ 206 (831)
+..+.+++...+..+. +.+...++.+.|+..|+
T Consensus 137 ~~~~~~~i~~~l~~~g--------~~~~~v~iipiSa~~g~ 169 (195)
T cd01884 137 LELVEMEVRELLSKYG--------FDGDNTPIVRGSALKAL 169 (195)
T ss_pred HHHHHHHHHHHHHHhc--------ccccCCeEEEeeCcccc
Confidence 3333344555554321 12223356667776665
No 59
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.89 E-value=1.1e-21 Score=230.31 Aligned_cols=103 Identities=32% Similarity=0.453 Sum_probs=85.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
.|+++||+|||||||+++| .| ..+|..++|++||+|+..+...+... ++..+
T Consensus 2 ii~~~GhvdhGKTtLi~aL-----------tg--~~~dr~~eE~~rGiTI~l~~~~~~~~---------------~g~~i 53 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAI-----------TG--VNADRLPEEKKRGMTIDLGYAYWPQP---------------DGRVL 53 (614)
T ss_pred EEEEECCCCCCHHHHHHHH-----------hC--CCCccchhcccCCceEEeeeEEEecC---------------CCcEE
Confidence 5899999999999999999 33 23688899999999998876655443 35679
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCc-EEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRP-VLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~-ii~iNKiD~~ 151 (831)
+|||||||.+|...+.+++..+|++++|||+.+ .+. .+.++ ++|+||+|+.
T Consensus 54 ~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 54 GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred EEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence 999999999999999999999999999999986 222 24555 5699999986
No 60
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.88 E-value=3.2e-23 Score=178.72 Aligned_cols=80 Identities=54% Similarity=1.049 Sum_probs=76.2
Q ss_pred ecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEecceeecC
Q 003316 715 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 794 (831)
Q Consensus 715 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 794 (831)
||||+|||+||++++|+|+++|++|||+|++++..+++..+.|+|++|++|+|||+++||++|+|+|+|+|+|+||++||
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999998887665558999999999999999999999999999999999999986
No 61
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.6e-22 Score=206.56 Aligned_cols=319 Identities=20% Similarity=0.234 Sum_probs=202.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc----------CCc-------eEEecCchhhheeceeeeeceeEEEE
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRQDEAERGITIKSTGISLYY 79 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~g~-------~~~~D~~~~e~~rgiTi~~~~~~~~~ 79 (831)
+...++..+|++|.|||||+.+|||.+..+-..+ .|+ +-.+|-.+.|||.||||+.+...|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 3456789999999999999999999998764321 111 22578899999999999998887765
Q ss_pred eechhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCc-EEEEe
Q 003316 80 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRP-VLTVN 146 (831)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~-ii~iN 146 (831)
. ..+|.+.|||||..|...|.++...||.||++|||.. +-.-+.+. ++.+|
T Consensus 84 ~----------------KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVN 147 (431)
T COG2895 84 E----------------KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVN 147 (431)
T ss_pred c----------------cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEe
Confidence 4 7899999999999999999999999999999999998 11124444 55999
Q ss_pred cCcchhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecC-ceeeeccCcceeEEeehhHHHHhhhhcCCCh
Q 003316 147 KMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEK-GTVAFSAGLHGWAFTLTNFAKMYASKFGVDE 225 (831)
Q Consensus 147 KiD~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~-~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~ 225 (831)
|||+. +++ .+.|++|.++...+..++.-.....+++|... -||...|...
T Consensus 148 KmDLv----dy~----e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~m--------------------- 198 (431)
T COG2895 148 KMDLV----DYS----EEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENM--------------------- 198 (431)
T ss_pred eeccc----ccC----HHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccccccCC---------------------
Confidence 99999 888 34577777777666654332211111111111 1111111111
Q ss_pred HHHHHHhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHH
Q 003316 226 SKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKAL 305 (831)
Q Consensus 226 ~~l~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l 305 (831)
.|...| -+-++||. +++.
T Consensus 199 ------------------pWY~Gp-------------------------------tLLe~LE~--v~i~----------- 216 (431)
T COG2895 199 ------------------PWYKGP-------------------------------TLLEILET--VEIA----------- 216 (431)
T ss_pred ------------------CcccCc-------------------------------cHHHHHhh--cccc-----------
Confidence 122221 00111211 0000
Q ss_pred HHHHHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEE
Q 003316 306 MKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGR 385 (831)
Q Consensus 306 ~~~i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~R 385 (831)
......||..-|--+. .|+.+-+-=-++
T Consensus 217 ---------------------------------------------------~~~~~~~~RfPVQ~V~-Rp~~dfRGyaGt 244 (431)
T COG2895 217 ---------------------------------------------------DDRSAKAFRFPVQYVN-RPNLDFRGYAGT 244 (431)
T ss_pred ---------------------------------------------------ccccccceeeceEEec-CCCCccccccee
Confidence 0001223333333322 122111122368
Q ss_pred EEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCcc
Q 003316 386 VFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAH 464 (831)
Q Consensus 386 V~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~ 464 (831)
|-||++++||.|.++.++ .. .+|++|..+.|. +++|.||+-+.++=-+++....| .+++... .
T Consensus 245 iasG~v~~Gd~vvvlPsG----~~-----s~V~~Ivt~dg~----~~~A~aG~aVtl~L~deidisRGd~i~~~~~---~ 308 (431)
T COG2895 245 IASGSVKVGDEVVVLPSG----KT-----SRVKRIVTFDGE----LAQASAGEAVTLVLADEIDISRGDLIVAADA---P 308 (431)
T ss_pred eeccceecCCeEEEccCC----Ce-----eeEEEEeccCCc----hhhccCCceEEEEEcceeecccCcEEEccCC---C
Confidence 889999999999987643 32 589999988665 56899999988875445444566 6766554 2
Q ss_pred ccccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc
Q 003316 465 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME 511 (831)
Q Consensus 465 ~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~ 511 (831)
+...-.|. .-++++.=+|..++....|.-+-++...+=..++...|
T Consensus 309 ~~~~~~f~-A~vvWm~~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ld 354 (431)
T COG2895 309 PAVADAFD-ADVVWMDEEPLLPGRSYDLKIATRTVRARVEEIKHQLD 354 (431)
T ss_pred cchhhhcc-eeEEEecCCCCCCCceEEEEecceEEEEEeeeeEEEEe
Confidence 22334454 77888888888888777776666555555555554444
No 62
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.88 E-value=4.9e-21 Score=216.33 Aligned_cols=121 Identities=31% Similarity=0.410 Sum_probs=90.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechh-----hhhc-ccc
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-----ALKS-YRG 91 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~-----~~~~-~~~ 91 (831)
...||+++||+|||||||+++| .| ..+|..++|++||+|+..+...+.|...+. .+.. ..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~L-----------t~--~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKAL-----------TG--VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVC 69 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHH-----------hC--eecccCHhHHHcCceeEecccccccccccccCccccccccccc
Confidence 4579999999999999999999 23 357899999999999998877776531100 0000 000
Q ss_pred cc----CCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh-hhCCCc-EEEEecCcch
Q 003316 92 ER----QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL-GERIRP-VLTVNKMDRC 151 (831)
Q Consensus 92 ~~----~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~-~~~~~~-ii~iNKiD~~ 151 (831)
.. ......++++|||||.+|..++.+++..+|++|+|||+.+ .+ ..+.++ ++++||+|+.
T Consensus 70 ~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 70 PNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 00 0124689999999999999999999999999999999983 12 223454 5699999987
No 63
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.87 E-value=4.5e-22 Score=204.88 Aligned_cols=115 Identities=30% Similarity=0.362 Sum_probs=98.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCC---------------ceEEecCchhhheeceeeeeceeEEEEeechhh
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG---------------DVRMTDTRQDEAERGITIKSTGISLYYEMTDAA 85 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g---------------~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~ 85 (831)
||+|+||+|||||||+++|++.+|.+.....| ..+++|+.++|++||+|++.....+.|.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----- 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----- 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-----
Confidence 68999999999999999999999998742111 1468999999999999999999888875
Q ss_pred hhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEE-EEecCcch
Q 003316 86 LKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVL-TVNKMDRC 151 (831)
Q Consensus 86 ~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii-~iNKiD~~ 151 (831)
+..++|+|||||.+|..++..+++.+|++|+|||+.+ .+. .+.++++ |+||+|+.
T Consensus 76 -----------~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 76 -----------KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred -----------CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 7799999999999999999999999999999999976 112 2345555 89999987
No 64
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.9e-20 Score=192.69 Aligned_cols=138 Identities=28% Similarity=0.393 Sum_probs=103.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhh------hccc
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL------KSYR 90 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~------~~~~ 90 (831)
+.-.||+.+||+|||||||+.+| .| ..+|.+.+|.+|||||+.+++......=+.+. .+..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Al-----------sG--vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~ 74 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKAL-----------SG--VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPK 74 (415)
T ss_pred CcceEeeeeeecccchhhheehh-----------hc--eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCC
Confidence 34679999999999999999999 67 56899999999999999887766542111111 1112
Q ss_pred cccC---C-CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-hC-CCcEEEEecCcchh
Q 003316 91 GERQ---G-NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-ER-IRPVLTVNKMDRCF 152 (831)
Q Consensus 91 ~~~~---~-~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-~~-~~~ii~iNKiD~~~ 152 (831)
|... . --+++.|+|+|||.-++..|..+...+|+|+|||+|++ ++. .+ +..||+-||+|+.
T Consensus 75 C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV- 153 (415)
T COG5257 75 CPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLV- 153 (415)
T ss_pred CCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccccee-
Confidence 2211 1 12479999999999999999999999999999999998 222 13 3446699999987
Q ss_pred hccCCCHHHHHHHHHHHHHHh
Q 003316 153 LELQVDGEEAYQTFQKVIENA 173 (831)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~ 173 (831)
+.+++.++++++.+.+
T Consensus 154 -----~~E~AlE~y~qIk~Fv 169 (415)
T COG5257 154 -----SRERALENYEQIKEFV 169 (415)
T ss_pred -----cHHHHHHHHHHHHHHh
Confidence 5677777777766543
No 65
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.86 E-value=1.3e-21 Score=202.96 Aligned_cols=115 Identities=35% Similarity=0.504 Sum_probs=99.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCccccc----------CCce-----EEecCchhhheeceeeeeceeEEEEeechhh
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGDV-----RMTDTRQDEAERGITIKSTGISLYYEMTDAA 85 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~g~~-----~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~ 85 (831)
||+++||+|||||||+++|++.+|.+.+.. .|.. +++|+.++|++||+|+++...++.|.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----- 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----- 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC-----
Confidence 799999999999999999999999987632 2332 47999999999999999999999885
Q ss_pred hhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------------Hhh-hCCCcEE-EE
Q 003316 86 LKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------------ALG-ERIRPVL-TV 145 (831)
Q Consensus 86 ~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------------~~~-~~~~~ii-~i 145 (831)
++.+++||||||.+|..++..+++.+|++|+|||+.+ ... .+.+|++ |+
T Consensus 76 -----------~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivv 144 (219)
T cd01883 76 -----------KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAV 144 (219)
T ss_pred -----------CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEE
Confidence 7899999999999999999999999999999999964 111 2345555 99
Q ss_pred ecCcch
Q 003316 146 NKMDRC 151 (831)
Q Consensus 146 NKiD~~ 151 (831)
||||+.
T Consensus 145 NK~Dl~ 150 (219)
T cd01883 145 NKMDDV 150 (219)
T ss_pred Eccccc
Confidence 999988
No 66
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.85 E-value=8.7e-20 Score=213.86 Aligned_cols=102 Identities=36% Similarity=0.485 Sum_probs=87.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
||+++||+|||||||+++| .|. .+|..++|++||+|++.....+.++ ++.+
T Consensus 2 ~I~iiG~~d~GKTTLi~aL-----------tg~--~~d~~~eE~~rGiTid~~~~~~~~~----------------~~~v 52 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKAL-----------TGI--AADRLPEEKKRGMTIDLGFAYFPLP----------------DYRL 52 (581)
T ss_pred EEEEECCCCCCHHHHHHHH-----------hCc--cCcCChhHhcCCceEEeEEEEEEeC----------------CEEE
Confidence 7999999999999999999 331 2577889999999999887777764 5899
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCC-cEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIR-PVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~-~ii~iNKiD~~ 151 (831)
++||||||.+|...+..++..+|++++|||+.+ .+ ..+.+ +++|+||+|+.
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 999999999999999999999999999999975 12 23456 56799999987
No 67
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.84 E-value=5.2e-21 Score=168.89 Aligned_cols=85 Identities=39% Similarity=0.535 Sum_probs=79.3
Q ss_pred eeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEeccee
Q 003316 712 RLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWD 791 (831)
Q Consensus 712 ~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~ 791 (831)
+||||||+++|.+|++++|+|+++|++|||+|+++... +.+++.|+|.+|+++++||.++||++|+|+|+|+++|+||+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~-~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~ 79 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPI-GGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYR 79 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEE-STTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhh-hhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeE
Confidence 58999999999999999999999999999999999887 34799999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 003316 792 MMSSDP 797 (831)
Q Consensus 792 ~v~~d~ 797 (831)
++++++
T Consensus 80 ~~~~~~ 85 (89)
T PF00679_consen 80 PVPGDI 85 (89)
T ss_dssp EESHHH
T ss_pred ECCCCh
Confidence 999985
No 68
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.83 E-value=4e-21 Score=168.19 Aligned_cols=83 Identities=36% Similarity=0.569 Sum_probs=78.4
Q ss_pred eeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEecceee
Q 003316 713 LLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDM 792 (831)
Q Consensus 713 LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~ 792 (831)
||||||+++|.||++++|+|+++|++|||+|.+++..+ +.+.|+|++|+++++||.++||++|+|+|+|+++|+||++
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~--~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~ 78 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRG--GAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEE 78 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccC--CcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceE
Confidence 69999999999999999999999999999999888643 5789999999999999999999999999999999999999
Q ss_pred cCCCC
Q 003316 793 MSSDP 797 (831)
Q Consensus 793 v~~d~ 797 (831)
+|+++
T Consensus 79 ~~~~~ 83 (85)
T smart00838 79 VPKSI 83 (85)
T ss_pred CChhh
Confidence 99764
No 69
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.82 E-value=1.8e-20 Score=162.15 Aligned_cols=80 Identities=66% Similarity=1.204 Sum_probs=76.1
Q ss_pred ecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEecceeecC
Q 003316 715 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 794 (831)
Q Consensus 715 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 794 (831)
||||+|+|++|++++|+|+++|++|||.|++++..++++.+.|+|++|++|++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 89999999999999999999999999999998876555669999999999999999999999999999999999999986
No 70
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.3e-20 Score=195.15 Aligned_cols=141 Identities=21% Similarity=0.353 Sum_probs=115.8
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc----------CCc-----eEEecCchhhheeceeeeeceeEEEEe
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLYYE 80 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~e~~rgiTi~~~~~~~~~~ 80 (831)
++...|+.++||+|+||||+-..+++.+|.++++. .++ +|++|+..+||++|-|+..+..+|..+
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 46688999999999999999999999999887641 121 579999999999999999999999876
Q ss_pred echhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------------Hh--hhCC-C
Q 003316 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------------AL--GERI-R 140 (831)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------------~~--~~~~-~ 140 (831)
..+++++|+|||..|..+++.++.+||.+++||.|.. ++ ..++ .
T Consensus 156 ----------------~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~ 219 (501)
T KOG0459|consen 156 ----------------NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH 219 (501)
T ss_pred ----------------ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccce
Confidence 7899999999999999999999999999999999975 12 2234 4
Q ss_pred cEEEEecCcchhhccCCCHHHHHHHHHHHHHHhhhhhh
Q 003316 141 PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMA 178 (831)
Q Consensus 141 ~ii~iNKiD~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 178 (831)
.|+++||||-+..+|.- +++.++.+.+..+|.
T Consensus 220 lVv~vNKMddPtvnWs~------eRy~E~~~k~~~fLr 251 (501)
T KOG0459|consen 220 LIVLINKMDDPTVNWSN------ERYEECKEKLQPFLR 251 (501)
T ss_pred EEEEEEeccCCccCcch------hhHHHHHHHHHHHHH
Confidence 46699999998555543 356666666666554
No 71
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.81 E-value=2.5e-20 Score=160.31 Aligned_cols=78 Identities=26% Similarity=0.529 Sum_probs=74.7
Q ss_pred ecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEecceeecC
Q 003316 715 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 794 (831)
Q Consensus 715 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 794 (831)
||||+++|.||++++|+|+++|++|||+|.+++..+ +.+.|+|++|++|+|||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE--DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC--CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999998654 578999999999999999999999999999999999999986
No 72
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.81 E-value=6.3e-20 Score=171.84 Aligned_cols=99 Identities=26% Similarity=0.346 Sum_probs=87.3
Q ss_pred hhcCCchhccceEEEeccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeeccccccccc
Q 003316 610 EEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHR 689 (831)
Q Consensus 610 ~~~~~~~~~~~~i~~~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~ 689 (831)
.++||+..+++.+|.++|...++|+|++.+.+..++++++++|++||++|+++|||+||||+||+|+|.|+.+|. .++
T Consensus 22 ~~~g~~~~~a~v~~~~~P~~~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s 99 (120)
T PF03764_consen 22 RQYGGKRQFAKVILRVEPLEGGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPLCGYPVTDVKVTLTDGEYHE--VDS 99 (120)
T ss_dssp EECTSSEEEEEEEEEEEETSTSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTTTSSEB-SEEEEEEEEEC-T--TTB
T ss_pred HHhCCCCceEEEEEEEeecccCCceeeeccccccccHHHHHHHhhhhhheecccccCCCceEEEEEEEEEeeecC--CcC
Confidence 357888888899999999876789999999999999999999999999999999999999999999999999996 334
Q ss_pred CCCchHHHHHHHHHHHHHhcC
Q 003316 690 GGGQVIPTARRVIYASQLTAK 710 (831)
Q Consensus 690 ~~~~~~~a~~~a~~~al~~a~ 710 (831)
+..+|++|+++||++||++|+
T Consensus 100 ~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 100 SPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHS-
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 456789999999999999985
No 73
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=7.5e-19 Score=192.08 Aligned_cols=114 Identities=28% Similarity=0.424 Sum_probs=94.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+...|-|+||+|||||||+++|....-+- ...| |||.+.++.++..+ ++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA--~E~G--------------GITQhIGAF~V~~p---------------~G 200 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAA--GEAG--------------GITQHIGAFTVTLP---------------SG 200 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceeh--hhcC--------------CccceeceEEEecC---------------CC
Confidence 45789999999999999999995443222 2245 89999888888775 46
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHHHH
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 165 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~~~ 165 (831)
..|+|+|||||.-|.....++.+++|.+||||.|.+ +-..++|.|+.|||+|++ +++|+.+++.
T Consensus 201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp----~a~pekv~~e 276 (683)
T KOG1145|consen 201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP----GANPEKVKRE 276 (683)
T ss_pred CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC----CCCHHHHHHH
Confidence 899999999999999999999999999999999988 223456777899999999 9998887655
Q ss_pred H
Q 003316 166 F 166 (831)
Q Consensus 166 l 166 (831)
|
T Consensus 277 L 277 (683)
T KOG1145|consen 277 L 277 (683)
T ss_pred H
Confidence 4
No 74
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.80 E-value=4.2e-20 Score=158.90 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=74.4
Q ss_pred ecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEecceeecC
Q 003316 715 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 794 (831)
Q Consensus 715 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 794 (831)
||||+++|+||++++|+|+++|++|||+|.+++..+ +.+.|+|++|++++|||.++||++|+|+|+|+++|+||++|.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG--DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC--CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999888654 589999999999999999999999999999999999999984
No 75
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.80 E-value=6e-19 Score=179.67 Aligned_cols=132 Identities=39% Similarity=0.674 Sum_probs=106.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
++|||+++|+.|+|||||+++|++..+.+........+.+|+.+.|..+|+|+......+.+. .
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~----------------~ 64 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK----------------D 64 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC----------------C
Confidence 479999999999999999999999877765532212366889999999999999888888774 7
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHHHH
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 165 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~~~ 165 (831)
+.++++|||||.+|...+...++.+|++++|+|+.+ +...+.|+++++||+|+. ....++..+.
T Consensus 65 ~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~----~~~~~~~~~~ 140 (194)
T cd01891 65 TKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP----DARPEEVVDE 140 (194)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHHH
Confidence 899999999999999999999999999999999875 123456667799999997 6554444444
Q ss_pred HHHH
Q 003316 166 FQKV 169 (831)
Q Consensus 166 l~~~ 169 (831)
+.+.
T Consensus 141 ~~~~ 144 (194)
T cd01891 141 VFDL 144 (194)
T ss_pred HHHH
Confidence 4443
No 76
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.80 E-value=7.2e-20 Score=155.53 Aligned_cols=73 Identities=41% Similarity=0.674 Sum_probs=68.4
Q ss_pred CCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEcC
Q 003316 473 VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 547 (831)
Q Consensus 473 ~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~ 547 (831)
|+|+++++|+|.++.|.++|.+||++|.+|||+|++.+| +|||++|+||||+||||+++||+++| |++|++++
T Consensus 2 p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~--~v~v~~~~ 75 (75)
T PF14492_consen 2 PPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRF--GVEVEFGK 75 (75)
T ss_dssp SS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTT--CEBEEEE-
T ss_pred CCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHH--CCeeEecC
Confidence 499999999999999999999999999999999999998 89999999999999999999999999 99999874
No 77
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.79 E-value=9.2e-20 Score=156.97 Aligned_cols=78 Identities=32% Similarity=0.578 Sum_probs=74.6
Q ss_pred ecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEecceeecC
Q 003316 715 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 794 (831)
Q Consensus 715 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 794 (831)
||||+|+|+||++++|+|+++|++|||+|++++..+ +.+.|+|.+|++|+|||.++||++|+|+|+++++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRG--GWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccC--CcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999988753 578999999999999999999999999999999999999986
No 78
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=5.7e-18 Score=187.95 Aligned_cols=118 Identities=29% Similarity=0.414 Sum_probs=93.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..-|+|+||+|||||||++.+... .+...++| |||.+.....+.++. .+.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t--~Va~~EaG--------------GITQhIGA~~v~~~~-------------~~~ 54 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKT--NVAAGEAG--------------GITQHIGAYQVPLDV-------------IKI 54 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcC--ccccccCC--------------ceeeEeeeEEEEecc-------------CCC
Confidence 4467999999999999999999433 23333355 899999988887740 024
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHHHH
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 165 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~~~ 165 (831)
..++|||||||.-|+....++..++|.|+||||+.+ +-..+.|.++++||||++ +++|+.+...
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~----~~np~~v~~e 130 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKP----EANPDKVKQE 130 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCC----CCCHHHHHHH
Confidence 689999999999999999999999999999999998 223356667799999999 9988776655
Q ss_pred HHH
Q 003316 166 FQK 168 (831)
Q Consensus 166 l~~ 168 (831)
+++
T Consensus 131 l~~ 133 (509)
T COG0532 131 LQE 133 (509)
T ss_pred HHH
Confidence 543
No 79
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.78 E-value=2.8e-19 Score=154.05 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=73.9
Q ss_pred ecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEecceeec
Q 003316 715 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMM 793 (831)
Q Consensus 715 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 793 (831)
||||+++|.||++++|+|+++|++|||+|.+.+..+ .+++.|+|.+|+++++||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~-~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDG-NGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECC-CCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999988754 257899999999999999999999999999999999999975
No 80
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=5.4e-18 Score=183.37 Aligned_cols=102 Identities=38% Similarity=0.519 Sum_probs=87.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+..||+|||||||+.++ .| ..+|..++|++||+|++.+..++... ++.+
T Consensus 2 ii~t~GhidHgkT~L~~al-----------tg--~~~d~l~EekKRG~TiDlg~~y~~~~----------------d~~~ 52 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKAL-----------TG--GVTDRLPEEKKRGITIDLGFYYRKLE----------------DGVM 52 (447)
T ss_pred eEEEeeeeeccchhhhhhh-----------cc--cccccchhhhhcCceEeeeeEeccCC----------------CCce
Confidence 6899999999999999999 44 46899999999999999887655543 6699
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCc-EEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRP-VLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~-ii~iNKiD~~ 151 (831)
.|||+|||+||...+..++...|.|+||||+.+ ++. -+.+. ++|+||+|+.
T Consensus 53 ~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~ 116 (447)
T COG3276 53 GFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRV 116 (447)
T ss_pred EEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccc
Confidence 999999999999999999999999999999976 222 24455 7799999977
No 81
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.78 E-value=2e-17 Score=193.57 Aligned_cols=119 Identities=29% Similarity=0.336 Sum_probs=72.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccc--cC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE--RQ 94 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~--~~ 94 (831)
.+...|+|+||+|||||||+++|........ ..| |+|.+.+...+.+............. ..
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~--~~g--------------~itq~ig~~~~~~~~~~~~~~~~~~~~~~~ 67 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAK--EAG--------------GITQHIGATEVPIDVIEKIAGPLKKPLPIK 67 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccC--CCC--------------ceEEeeceeeccccccccccceeccccccc
Confidence 3456899999999999999999954321111 122 23333222211111000000000000 00
Q ss_pred CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCCcEEEEecCcch
Q 003316 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIRPVLTVNKMDRC 151 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~~ii~iNKiD~~ 151 (831)
-.-..++|+|||||.+|...+.++++.+|++|+|+|+.+ .+ ..+.|.++++||+|+.
T Consensus 68 ~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 68 LKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred cccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 000137999999999999999999999999999999974 22 2345656799999985
No 82
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.77 E-value=4e-19 Score=153.40 Aligned_cols=79 Identities=38% Similarity=0.602 Sum_probs=75.2
Q ss_pred ecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEecceeecC
Q 003316 715 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 794 (831)
Q Consensus 715 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 794 (831)
||||.++|+||++++|+|+++|++|||+|.+++..+ ++.+.|+|++|++|++||.++||++|+|+|+++++|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~-~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRG-TGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecC-CCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 899999999999999999999999999999988754 4689999999999999999999999999999999999999985
No 83
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.77 E-value=4.8e-18 Score=170.21 Aligned_cols=120 Identities=46% Similarity=0.743 Sum_probs=99.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
|||+++||+|+|||||+++|++..|.+.+.. ....++|+.+.|+++|+|+....+.+.|.. .++.++.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~-----------~~~~~~~ 68 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE-MKEQVLDSMDLERERGITIKAQTVRLNYKA-----------KDGQEYL 68 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC-CceEeccCChhHHHCCCeEecceEEEEEec-----------CCCCcEE
Confidence 8999999999999999999999988876531 224688999999999999998888887741 1235778
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~ 151 (831)
++|+|||||.+|...+..+++.+|++|+|+|+.+ ....+.|.++|+||+|+.
T Consensus 69 ~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 69 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred EEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 9999999999999999999999999999999975 122345556799999987
No 84
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.75 E-value=1.3e-18 Score=150.22 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=73.1
Q ss_pred ecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhh-cCchHHHhhhCCCCceeEEEecceeec
Q 003316 715 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDMM 793 (831)
Q Consensus 715 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 793 (831)
|||++++|.||++++|+|+++|++|||+|++++..++ +.+.|+|.+|++++ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~-~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDA-NRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCC-CeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 8999999999999999999999999999999986542 47899999999999 599999999999999999999999975
No 85
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.74 E-value=7.8e-18 Score=172.71 Aligned_cols=119 Identities=30% Similarity=0.381 Sum_probs=90.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeech------h-hhh----c
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD------A-ALK----S 88 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~------~-~~~----~ 88 (831)
+|||++||+|||||||+++| .| ..+|+.+.|++||+|+..+..++.|.... + ..+ .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l-----------~~--~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKAL-----------SG--VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHH-----------hC--CCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 59999999999999999999 33 34688899999999999999988874100 0 000 0
Q ss_pred cccccC------CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-hCCCc-EEEEecC
Q 003316 89 YRGERQ------GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-ERIRP-VLTVNKM 148 (831)
Q Consensus 89 ~~~~~~------~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-~~~~~-ii~iNKi 148 (831)
.....+ ...++++|||||||.+|..++..+++.+|++++|||+.+ .+. .+.+| ++|+||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 000011 123789999999999999999999999999999999974 122 23444 5599999
Q ss_pred cch
Q 003316 149 DRC 151 (831)
Q Consensus 149 D~~ 151 (831)
|+.
T Consensus 148 Dl~ 150 (203)
T cd01888 148 DLV 150 (203)
T ss_pred hcc
Confidence 987
No 86
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.73 E-value=8e-17 Score=169.35 Aligned_cols=287 Identities=22% Similarity=0.353 Sum_probs=189.1
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhh--hcccc--
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL--KSYRG-- 91 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~--~~~~~-- 91 (831)
.....+|+..||+|||||||+.+| .+|..+..+-+.-.++|..+.|.+||.|-..+..-+-|.. +..+ +++..
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~L--vtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~d-gk~~rlknPld~a 190 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVL--VTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDD-GKVVRLKNPLDEA 190 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEE--EecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecC-CceEeecCcccHH
Confidence 345679999999999999999999 6666665422223489999999999998877776666654 2211 11100
Q ss_pred --c--cCCCCeeEEEEeCCCCcchHHHHHHHh--hhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhh
Q 003316 92 --E--RQGNEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFL 153 (831)
Q Consensus 92 --~--~~~~~~~inliDTPGh~df~~ev~~al--~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~ 153 (831)
. .+..+..+.|+||-||..+...+++++ ...|..+|||.|.+ ++....|.|++++|+|+.
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~-- 268 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMV-- 268 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccC--
Confidence 0 133467899999999999999999999 47899999999998 455567778899999987
Q ss_pred ccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhh
Q 003316 154 ELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLW 233 (831)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw 233 (831)
.. .+++.+++++..+|.... .+|+--. . -|..-+....-
T Consensus 269 --~d------dr~~~v~~ei~~~Lk~v~--------------Rip~~vk-----------------~--~~d~v~aa~a~ 307 (527)
T COG5258 269 --PD------DRFQGVVEEISALLKRVG--------------RIPLIVK-----------------D--TDDVVLAAKAM 307 (527)
T ss_pred --cH------HHHHHHHHHHHHHHHHhc--------------ccceeee-----------------c--cchhHHhhhhh
Confidence 33 256677777666664311 1111000 0 00000000000
Q ss_pred cccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcc
Q 003316 234 GENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTW 313 (831)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~ 313 (831)
+.+ +..
T Consensus 308 -------k~~-------------------------------------------------------------------~~v 313 (527)
T COG5258 308 -------KAG-------------------------------------------------------------------RGV 313 (527)
T ss_pred -------hcC-------------------------------------------------------------------Cce
Confidence 000 002
Q ss_pred ccc---------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEE
Q 003316 314 LPA---------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFG 384 (831)
Q Consensus 314 ~P~---------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~ 384 (831)
+|+ --.||+-+...||.-. ..+..+||.+||-|++.-...|. ++-+
T Consensus 314 vPi~~tSsVTg~GldlL~e~f~~Lp~rr------------------------~~~d~g~flmYId~iYsVtGVGt-VvsG 368 (527)
T COG5258 314 VPIFYTSSVTGEGLDLLDEFFLLLPKRR------------------------RWDDEGPFLMYIDKIYSVTGVGT-VVSG 368 (527)
T ss_pred EEEEEEecccCccHHHHHHHHHhCCccc------------------------ccCCCCCeEEEEEeeEEEeeeEE-EEee
Confidence 221 1245666666666541 12456899999999999888887 8889
Q ss_pred EEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eee
Q 003316 385 RVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLT 456 (831)
Q Consensus 385 RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl~ 456 (831)
-|-||.|+.||+|++ ||+.+ | ++.+.+|+.|-. ....|++|.||+|+.++ |++.--...| .|+
T Consensus 369 sV~~G~l~~gd~vll-GP~~~-G---~fr~v~vkSIem----h~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~ 434 (527)
T COG5258 369 SVKSGILHVGDTVLL-GPFKD-G---KFREVVVKSIEM----HHYRVDSAKAGSIIGIALKGVEKEELERGMVLS 434 (527)
T ss_pred eEEeeeeccCCEEEE-ccCCC-C---cEEEEEEEEEEE----eeEEeccccCCcEEEEEecccCHHHHhcceEec
Confidence 999999999999995 54422 2 344578887753 45679999999997654 6554223455 443
No 87
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.5e-16 Score=164.91 Aligned_cols=117 Identities=28% Similarity=0.445 Sum_probs=94.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.-|++|+||+|+|||||+.+|-. .|++...|..++.++||||.+.+...+....... -+.+...
T Consensus 7 n~N~GiLGHvDSGKTtLarals~---------~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~par-------Lpq~e~l 70 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSE---------LGSTAAFDKHPQSTERGITLDLGFSTMTVLSPAR-------LPQGEQL 70 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHh---------hccchhhccCCcccccceeEeecceeeecccccc-------cCccccc
Confidence 47999999999999999999933 3556678999999999999999988777642110 1234457
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--------H--hhh--CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--------A--LGE--RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~--------~--~~~--~~~~ii~iNKiD~~ 151 (831)
++++||||||..+...++.+..+.|.+++|||+.. + +.+ -.+.++|+||+|..
T Consensus 71 q~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~l 135 (522)
T KOG0461|consen 71 QFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVL 135 (522)
T ss_pred eeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccc
Confidence 89999999999999999999999999999999997 2 222 24557899999986
No 88
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.71 E-value=5e-17 Score=145.02 Aligned_cols=94 Identities=37% Similarity=0.681 Sum_probs=80.4
Q ss_pred eEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe
Q 003316 364 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 443 (831)
Q Consensus 364 l~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~ 443 (831)
++|+|||+.++++.|++++|+|||||+|++||.|++++++++.+.+++...++|++||.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 57999999999987666999999999999999999987654433222344589999999999999999999999999999
Q ss_pred ccccccccceeeec
Q 003316 444 GLDQYITKNATLTN 457 (831)
Q Consensus 444 gl~~~~~~tgTl~~ 457 (831)
|+++.+++++|+++
T Consensus 81 gl~~~~~~~~t~~~ 94 (94)
T cd04090 81 GIDSSIVKTATITS 94 (94)
T ss_pred CcchheeceEEecC
Confidence 99999888888863
No 89
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.70 E-value=2.2e-15 Score=175.61 Aligned_cols=117 Identities=28% Similarity=0.324 Sum_probs=74.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcc--ccccCCC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY--RGERQGN 96 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~--~~~~~~~ 96 (831)
...|+|+||+|||||||+++|+...-.. ... .|+|.+.....+.+.......... ......+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~--~e~--------------ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~ 67 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAK--REA--------------GGITQHIGATEIPMDVIEGICGDLLKKFKIRLK 67 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccc--ccC--------------CceecccCeeEeeeccccccccccccccccccc
Confidence 4579999999999999999996542211 112 234444443333332100000000 0000001
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~ 151 (831)
...++|+|||||.+|.....++++.+|++++|+|+.+ .+. .+.|.++++||+|+.
T Consensus 68 ~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 68 IPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRI 134 (590)
T ss_pred cCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 1248999999999999999999999999999999974 222 345556799999986
No 90
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.68 E-value=5.8e-16 Score=157.43 Aligned_cols=120 Identities=28% Similarity=0.371 Sum_probs=92.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
||+++||.|+|||||+++|+... + ...+|...+|++||+|+.....++.|..... .......++.++.+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~--------~-~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 70 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIA--------S-TAAFDKNPQSQERGITLDLGFSSFYVDKPKH--LRELINPGEENLQI 70 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhcc--------c-hhhhccCHHHHHcCCeeeecceEEEeccccc--ccccccccccCceE
Confidence 89999999999999999997642 1 2467888999999999999988888752110 00000112347799
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~ 151 (831)
+++|||||.+|..++..+++.+|++++|+|+.+ ... .+.|+++++||+|+.
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 999999999999999999999999999999975 111 245556799999987
No 91
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.68 E-value=1.8e-16 Score=138.51 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=73.5
Q ss_pred CCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEE
Q 003316 362 GPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVA 441 (831)
Q Consensus 362 ~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIva 441 (831)
+||+++|||+.++++.|+ ++|+|||||+|++||.|++.. +. .+|+++||.++|.+..++++|.|||||+
T Consensus 2 ~p~~~~Vfkv~~d~~~G~-la~~RV~sG~l~~g~~v~~~~-----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~a 70 (85)
T cd03690 2 SELSGTVFKIERDDKGER-LAYLRLYSGTLRLRDSVRVNR-----EE-----KIKITELRVFNNGEVVTADTVTAGDIAI 70 (85)
T ss_pred CCcEEEEEEeEECCCCCe-EEEEEEccCEEcCCCEEEeCC-----Cc-----EEEeceeEEEeCCCeEECcEECCCCEEE
Confidence 689999999999999886 999999999999999998532 22 2799999999999999999999999999
Q ss_pred Eeccccccccce-eee
Q 003316 442 MVGLDQYITKNA-TLT 456 (831)
Q Consensus 442 i~gl~~~~~~tg-Tl~ 456 (831)
+.|++++ .+| ||+
T Consensus 71 i~gl~~~--~~Gdtl~ 84 (85)
T cd03690 71 LTGLKGL--RVGDVLG 84 (85)
T ss_pred EECCCCC--cCccccC
Confidence 9999987 688 774
No 92
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.67 E-value=1.7e-16 Score=164.63 Aligned_cols=128 Identities=25% Similarity=0.282 Sum_probs=93.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCc-eEEecCchhhheeceeeeeceeEEEEeechhhhhcc--------cc
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY--------RG 91 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~-~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~--------~~ 91 (831)
.|+++||.++|||||+++|.. +..... .|. ...+|.+.+|++||+|+..+...+.+......+... ..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~~-~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 77 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDNG-RGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIE 77 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCCC-CCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccce
Confidence 378999999999999999964 444332 332 347899999999999987666556554321110000 01
Q ss_pred ccCCCCeeEEEEeCCCCcchHHHHHHHhh--hcCeEEEEEecHH------------HhhhCCCcEEEEecCcch
Q 003316 92 ERQGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIE------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 92 ~~~~~~~~inliDTPGh~df~~ev~~al~--~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~ 151 (831)
..+.+++.++|||||||.+|..++.+++. .+|++++|||+.. +...+.|.++|+||+|+.
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 12334679999999999999999999986 7999999999875 233456667799999986
No 93
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.65 E-value=1.2e-15 Score=141.32 Aligned_cols=112 Identities=12% Similarity=0.052 Sum_probs=88.9
Q ss_pred EeEEeeeecccceeEeeecCCC--eeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEecc
Q 003316 550 VSFRETVLEKSCRTVMSKSPNK--HNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGP 627 (831)
Q Consensus 550 V~yrETi~~~~~~~~~~~~~~~--~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p 627 (831)
|+|||||+++++...+.+..+. +.+++++++|++.+
T Consensus 1 VaYRETI~~~~~~~~~~~~~~~~~~a~v~l~veP~~~g------------------------------------------ 38 (115)
T cd01684 1 VIYKERPLGTGEGVEHIEVPPNPFWATVGLRVEPLPRG------------------------------------------ 38 (115)
T ss_pred CceEEEeCCcEEEEEEEccCCCcEEEEEEEEEEECCCC------------------------------------------
Confidence 6899999988764333333333 56677777776421
Q ss_pred CCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccc-cccccCCCchHHHHHHHHHHHH
Q 003316 628 ETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQ 706 (831)
Q Consensus 628 ~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al 706 (831)
..+.|.+.+.|..+++++.++|++||+.++++||| |+||.||+|+|.++.+|. ||+..+ |+.|+++|+++|+
T Consensus 39 ---~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~pv~dv~V~l~~~~~h~~~ss~~a---f~~Aa~~a~~~a~ 111 (115)
T cd01684 39 ---SGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GWEVTDCKVTLTYGRYHSPVSTAAD---FRELTPRVLRQAL 111 (115)
T ss_pred ---CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CCCEeeEEEEEEEeeecCCCCCHHH---HHHHHHHHHHHHH
Confidence 13567777778889999999999999999999999 999999999999999997 666554 5689999999999
Q ss_pred HhcC
Q 003316 707 LTAK 710 (831)
Q Consensus 707 ~~a~ 710 (831)
.+|+
T Consensus 112 ~~a~ 115 (115)
T cd01684 112 KKAG 115 (115)
T ss_pred HhcC
Confidence 9874
No 94
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.62 E-value=1.5e-15 Score=132.33 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=72.6
Q ss_pred eEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe
Q 003316 364 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 443 (831)
Q Consensus 364 l~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~ 443 (831)
|+|+|||++++++.|+ ++|+|||||+|++||.|++... +. .+++++|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~d~~~g~-i~~~Ri~sGtl~~g~~v~~~~~----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04092 1 LCALAFKVVHDPQRGP-LTFVRVYSGTLKRGSALYNTNT----GK-----KERISRLLQPFADQYQEIPSLSAGNIGVIT 70 (83)
T ss_pred CEEEEEecccCCCCCe-EEEEEEecCEECCCCEEEECCC----CC-----EEEeeEEEEEECCCceECCeeCCCCEEEEE
Confidence 5799999999999876 9999999999999999997542 22 279999999999999999999999999999
Q ss_pred ccccccccce-eeec
Q 003316 444 GLDQYITKNA-TLTN 457 (831)
Q Consensus 444 gl~~~~~~tg-Tl~~ 457 (831)
|++++ ++| ||++
T Consensus 71 gl~~~--~~Gdtl~~ 83 (83)
T cd04092 71 GLKQT--RTGDTLVT 83 (83)
T ss_pred CCCCc--ccCCEEeC
Confidence 99886 788 8763
No 95
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.61 E-value=4.7e-15 Score=149.34 Aligned_cols=115 Identities=42% Similarity=0.655 Sum_probs=93.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
||+++|..|+|||||+++|+..............+.++....+..+|+|+......+.+. ...+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 64 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP----------------DRRV 64 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC----------------CEEE
Confidence 689999999999999999998877655432222356778888999999988777666664 6789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
++|||||+.+|......+++.+|++++|+|+.. .+.. +.|.++++||+|+.
T Consensus 65 ~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~ 127 (189)
T cd00881 65 NFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRV 127 (189)
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCc
Confidence 999999999999999999999999999999875 2222 45556699999987
No 96
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.59 E-value=4.4e-15 Score=129.62 Aligned_cols=80 Identities=28% Similarity=0.451 Sum_probs=70.9
Q ss_pred EEEEEeec---CCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE
Q 003316 366 LYVSKMIP---ASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 442 (831)
Q Consensus 366 a~VfK~~~---~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai 442 (831)
|+|||+.+ +++.|+ ++|+|||||+|++||.|++.. .++ .+++++|+.++|.+..++++|.||||+++
T Consensus 1 ~~vfKv~~~~~~~~~Gk-la~~Rv~sG~l~~g~~v~~~~----~~~-----~~kv~~l~~~~g~~~~~v~~a~aGdIv~v 70 (85)
T cd03689 1 GFVFKIQANMDPAHRDR-IAFVRVCSGKFERGMKVKHVR----LGK-----EVRLSNPQQFFAQDRETVDEAYPGDIIGL 70 (85)
T ss_pred CEEEEEecccCCCCCcE-EEEEEEECCEEcCCCEEEEcC----CCC-----EEEeeEeEEEecCCeeEcCEECCCCEEEE
Confidence 58999999 898887 999999999999999999643 222 27999999999999999999999999999
Q ss_pred eccccccccce-eeec
Q 003316 443 VGLDQYITKNA-TLTN 457 (831)
Q Consensus 443 ~gl~~~~~~tg-Tl~~ 457 (831)
.|++++ .+| |||+
T Consensus 71 ~gl~~~--~~Gdtl~~ 84 (85)
T cd03689 71 VNPGNF--QIGDTLTE 84 (85)
T ss_pred ECCCCc--cccCEeeC
Confidence 999987 788 8874
No 97
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.59 E-value=8e-15 Score=136.43 Aligned_cols=77 Identities=22% Similarity=0.191 Sum_probs=67.5
Q ss_pred CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcC
Q 003316 632 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAK 710 (831)
Q Consensus 632 ~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~ 710 (831)
+|.|++.+.+..++++++++|++||++|+++|||||+||+|++|+|.++.+|.+ +....+|+.|+++||++||++|+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~~~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01680 40 GVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEG--VSTEAGFRAAAGRAFESAAQKAG 116 (116)
T ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCceeeEEEEEEEEEecCC--CCCHHHHHHHHHHHHHHHHHhcC
Confidence 367777777778899999999999999999999999999999999999999863 23446788999999999999874
No 98
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.58 E-value=9.5e-15 Score=130.14 Aligned_cols=91 Identities=51% Similarity=0.935 Sum_probs=73.7
Q ss_pred eEEEEEEeecCC-CCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE
Q 003316 364 LMLYVSKMIPAS-DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 442 (831)
Q Consensus 364 l~a~VfK~~~~~-~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai 442 (831)
++++|||+.+++ ..| +++|+|||||+|++|+.|++.++++.....+....+++++||.++|.+..++++|+|||||++
T Consensus 1 ~v~~v~Ki~~~~~~~g-~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i 79 (93)
T cd03700 1 LVMYVTKMVPTPDKGG-FIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI 79 (93)
T ss_pred CeEEEEeCeECCCCCE-EEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE
Confidence 478999999988 544 599999999999999999987644322111123347999999999999999999999999999
Q ss_pred eccccccccceeeec
Q 003316 443 VGLDQYITKNATLTN 457 (831)
Q Consensus 443 ~gl~~~~~~tgTl~~ 457 (831)
.|++++ ++|++++
T Consensus 80 ~g~~~~--~~g~~~~ 92 (93)
T cd03700 80 VGLDQL--KSGTTAT 92 (93)
T ss_pred ECCccC--ceEeEec
Confidence 999886 6785543
No 99
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.58 E-value=7.5e-15 Score=128.02 Aligned_cols=81 Identities=32% Similarity=0.433 Sum_probs=72.1
Q ss_pred eEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe
Q 003316 364 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 443 (831)
Q Consensus 364 l~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~ 443 (831)
++|+|||+.++++.|+ ++|+|||||+|++||.|++++. +. .+++++|+.++|.+..++++++|||||++.
T Consensus 1 ~~a~Vfk~~~d~~~G~-~~~~Rv~sG~l~~g~~v~~~~~----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04088 1 FVALVFKTIHDPFVGK-LSFVRVYSGTLKAGSTLYNSTK----GK-----KERVGRLLRMHGKKQEEVEEAGAGDIGAVA 70 (83)
T ss_pred CEEEEEEcccCCCCce-EEEEEEecCEEcCCCEEEECCC----Cc-----EEEeeEEEEEcCCCceECCEeCCCCEEEEE
Confidence 5799999999998887 9999999999999999997642 22 279999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003316 444 GLDQYITKNA-TLT 456 (831)
Q Consensus 444 gl~~~~~~tg-Tl~ 456 (831)
|++++ ++| ||+
T Consensus 71 g~~~~--~~Gdtl~ 82 (83)
T cd04088 71 GLKDT--ATGDTLC 82 (83)
T ss_pred CCCCC--ccCCEee
Confidence 99986 788 775
No 100
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.57 E-value=1.1e-14 Score=126.27 Aligned_cols=79 Identities=24% Similarity=0.388 Sum_probs=69.7
Q ss_pred eEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe
Q 003316 364 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 443 (831)
Q Consensus 364 l~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~ 443 (831)
++|+|||+.+++. |+ ++|+|||||+|++||.|+++. .+. +++|.+|+.++|.+..+++++.||||+++.
T Consensus 1 ~~a~vfK~~~~~~-G~-i~~~Rv~sG~lk~gd~v~~~~----~~~-----~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~ 69 (81)
T cd04091 1 FVGLAFKLEEGRF-GQ-LTYMRIYQGKLKKGDTIYNVR----TGK-----KVRVPRLVRMHSNEMEEVEEAGAGDICAIF 69 (81)
T ss_pred CeEEEEEeecCCC-CC-EEEEEEecCEEcCCCEEEEcC----CCC-----EEEEeEEEEEeCCCceEccEECCCCEEEEE
Confidence 5799999999877 77 999999999999999999653 232 279999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003316 444 GLDQYITKNA-TLT 456 (831)
Q Consensus 444 gl~~~~~~tg-Tl~ 456 (831)
|++ + ++| ||+
T Consensus 70 g~~-~--~~Gdtl~ 80 (81)
T cd04091 70 GID-C--ASGDTFT 80 (81)
T ss_pred CCC-c--ccCCEec
Confidence 997 5 788 875
No 101
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.55 E-value=4e-14 Score=139.14 Aligned_cols=103 Identities=33% Similarity=0.399 Sum_probs=79.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.|+|||||+++|... ..+..+.|..+++|+......+.+. .+..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~-------------~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~ 53 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI-------------ETDRLPEEKKRGITIDLGFAYLDLP---------------SGKRL 53 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc-------------ccccchhhhccCceEEeeeEEEEec---------------CCcEE
Confidence 7999999999999999999321 1233455667788887776666553 15689
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCC-CcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERI-RPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~-~~ii~iNKiD~~ 151 (831)
++|||||+.+|...+..+++.+|++++|+|+.+ .+. .+. |.++++||+|+.
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 999999999999888999999999999999864 111 234 446699999987
No 102
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.52 E-value=5.7e-14 Score=123.34 Aligned_cols=84 Identities=25% Similarity=0.442 Sum_probs=72.5
Q ss_pred eEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe
Q 003316 364 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 443 (831)
Q Consensus 364 l~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~ 443 (831)
|.++|||+..+++.|+ ++|+|||||+|++||.|++..++ . +...+++++|+.++|.+..++++++|||||++.
T Consensus 1 ~~~~vfk~~~d~~~g~-i~~~Rv~sG~l~~g~~v~~~~~~----~--~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~ 73 (86)
T cd03691 1 LQMLVTTLDYDDYVGR-IAIGRIFRGTVKVGQQVAVVKRD----G--KIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA 73 (86)
T ss_pred CeEEEEEeEecCCCCe-EEEEEEEeCEEcCCCEEEEEcCC----C--CEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE
Confidence 4689999999998887 99999999999999999976532 1 112368999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003316 444 GLDQYITKNA-TLT 456 (831)
Q Consensus 444 gl~~~~~~tg-Tl~ 456 (831)
|++++ .+| ||+
T Consensus 74 gl~~~--~~Gdtl~ 85 (86)
T cd03691 74 GIEDI--TIGDTIC 85 (86)
T ss_pred CCCCC--cccceec
Confidence 99887 678 775
No 103
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.49 E-value=4.7e-12 Score=154.52 Aligned_cols=104 Identities=23% Similarity=0.225 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccc--ccCCCCeeEEEEeCCCCc
Q 003316 32 KSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG--ERQGNEYLINLIDSPGHV 109 (831)
Q Consensus 32 KTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~inliDTPGh~ 109 (831)
||||+++|..++- .++...|||++.++..+.++.-...+..... ....+...++|+|||||.
T Consensus 474 KTtLLD~iR~t~v----------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe 537 (1049)
T PRK14845 474 NTTLLDKIRKTRV----------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE 537 (1049)
T ss_pred cccHHHHHhCCCc----------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence 9999999933221 2334569999999888876421100000000 000111248999999999
Q ss_pred chHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcch
Q 003316 110 DFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 110 df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~ 151 (831)
+|.....++++.+|++++|+|+.+ .+. .+.|.++++||+|+.
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 999888889999999999999974 222 344556699999985
No 104
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.49 E-value=7.1e-14 Score=129.94 Aligned_cols=76 Identities=22% Similarity=0.133 Sum_probs=67.9
Q ss_pred CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccc-cccccCCCchHHHHHHHHHHHHHhcC
Q 003316 632 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAK 710 (831)
Q Consensus 632 ~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~ 710 (831)
.|.|.+++.+..++++++++|.+||++++++||++|+||+||+|+|.++.+|. |+. ...|+.|+++|+++|+.+|+
T Consensus 40 g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv~~v~V~l~~~~~~~~~s~---~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01434 40 GFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHDVDSS---EMAFKIAARMAFKEAFKKAK 116 (116)
T ss_pred CCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCccccEEEEEEeceeecCCCC---HHHHHHHHHHHHHHHHHhcC
Confidence 46788888888899999999999999999999999999999999999999997 554 34578999999999999874
No 105
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.47 E-value=2e-13 Score=119.68 Aligned_cols=81 Identities=22% Similarity=0.371 Sum_probs=67.4
Q ss_pred eEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe
Q 003316 364 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 443 (831)
Q Consensus 364 l~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~ 443 (831)
|+|+|||+.++++.|+ ++|+|||||+|++||.|++.. .+++ +++++|+.+ +.+..+++++.||||+++.
T Consensus 1 ~~~~Vfk~~~d~~~G~-i~~~Rv~sG~l~~~~~v~~~~----~~~~-----~~i~~l~~~-~~~~~~~~~~~aGdI~~v~ 69 (86)
T cd03699 1 LRALIFDSWYDPYRGV-IALVRVFDGTLKKGDKIRFMS----TGKE-----YEVEEVGIF-RPEMTPTDELSAGQVGYII 69 (86)
T ss_pred CEEEEEEeeccCCCCE-EEEEEEEcCEEcCCCEEEEec----CCCe-----EEEEEEEEE-CCCccCCceECCCCEEEEE
Confidence 5799999999999887 999999999999999999653 2222 799999955 7778999999999999996
Q ss_pred -c---cccccccce-eeec
Q 003316 444 -G---LDQYITKNA-TLTN 457 (831)
Q Consensus 444 -g---l~~~~~~tg-Tl~~ 457 (831)
| ++++ .+| ||++
T Consensus 70 ~g~~~l~~~--~~Gdtl~~ 86 (86)
T cd03699 70 AGIKTVKDA--RVGDTITL 86 (86)
T ss_pred ccccccCcc--ccccEeeC
Confidence 4 5555 678 8863
No 106
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.41 E-value=6.9e-13 Score=124.14 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=82.3
Q ss_pred EeEEeeeecccceeEeee----cCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEe
Q 003316 550 VSFRETVLEKSCRTVMSK----SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCF 625 (831)
Q Consensus 550 V~yrETi~~~~~~~~~~~----~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 625 (831)
|+|||||.++++.....+ ....+.+++++++|++.+ ++.+ +
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~-----~~~~-----------------~------------- 45 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQAS-----SSPV-----------------E------------- 45 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCC-----CCCC-----------------c-------------
Confidence 689999999865322221 234467788889998632 0000 0
Q ss_pred ccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHH
Q 003316 626 GPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYAS 705 (831)
Q Consensus 626 ~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a 705 (831)
...|.+.. +...++++.++|++|++.|+++|||+|+||+||+|+|.++.+|...+. ..++.|++.|+++|
T Consensus 46 ------~i~~~~~~-~~~~p~~~~~ai~~g~~~al~~Gpl~G~pv~~v~V~l~~~~~~~~~s~---~~~~~Aa~~a~~~a 115 (120)
T cd01693 46 ------LIELANSA-IEVLLKRIQEAVENGVHSALLQGPLLGFPVQDVAITLHSLTIGPGTSP---TMISACASQCVQKA 115 (120)
T ss_pred ------eeEecCcc-CCcChHHHHHHHHHHHHHHHHcCCccCCceeeEEEEEEeCCcCCCCCH---HHHHHHHHHHHHHH
Confidence 01122122 456788999999999999999999999999999999999999963221 22447899999999
Q ss_pred HHhcC
Q 003316 706 QLTAK 710 (831)
Q Consensus 706 l~~a~ 710 (831)
+.+|+
T Consensus 116 l~~a~ 120 (120)
T cd01693 116 LKSAG 120 (120)
T ss_pred HHhcc
Confidence 99874
No 107
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.40 E-value=1.9e-12 Score=127.94 Aligned_cols=102 Identities=28% Similarity=0.369 Sum_probs=73.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
.|+|+|+.++|||||+++|....-. . ...+++|.......+.+. .+.++.+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~--~--------------~~~~~~t~~~~~~~~~~~-------------~~~~~~~ 52 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA--A--------------GEAGGITQHIGAFEVPAE-------------VLKIPGI 52 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc--c--------------ccCCCeEEeeccEEEecc-------------cCCcceE
Confidence 6999999999999999999543211 0 112344544433333331 0136789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~ 151 (831)
+++||||+.+|......+++.+|++++|+|+.+ .+. .+.|.++|+||+|+.
T Consensus 53 ~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 53 TFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred EEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecc
Confidence 999999999998888889999999999999964 222 345556699999987
No 108
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.36 E-value=4.3e-12 Score=125.38 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=73.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
||+++|+.|+|||||+++|....+.. .|. ...+ ...|+......+.+. +..+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~----~~~------~~~~--~~~t~~~~~~~~~~~----------------~~~~ 52 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY----KGL------PPSK--ITPTVGLNIGTIEVG----------------NARL 52 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc----cCC------cccc--cCCccccceEEEEEC----------------CEEE
Confidence 68999999999999999996643221 110 0001 112333333344443 6799
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+++|||||.+|.......++.+|++++|+|+.+ .+. .+.|.++++||+|+.
T Consensus 53 ~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 53 KFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred EEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 999999999999888899999999999999886 111 234556699999987
No 109
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.36 E-value=5.6e-12 Score=144.74 Aligned_cols=103 Identities=26% Similarity=0.309 Sum_probs=76.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+|+|++|+|||||+++|++....+... ..|+|..+....+.+. +
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~---------------~~gtt~~~~~~~~~~~----------------~ 220 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD---------------IAGTTRDSIDTPFERD----------------G 220 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC---------------CCCceEEEEEEEEEEC----------------C
Confidence 35789999999999999999997765443332 2356666655555553 6
Q ss_pred eeEEEEeCCCCcch-----------HHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDF-----------SSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df-----------~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~ 151 (831)
..++++||||+.+. ...+.++++.+|++|+|+|+.+ +...+.+.++++||+|+.
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 78999999997432 1234568899999999999986 233456667799999986
No 110
>COG1159 Era GTPase [General function prediction only]
Probab=99.36 E-value=7e-12 Score=130.74 Aligned_cols=102 Identities=30% Similarity=0.392 Sum_probs=73.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.--|||+|++|+|||||+|+|+...-+|.+..+.++| -+-+||.. .+++
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR-------~~I~GI~t------------------------~~~~ 54 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR-------NRIRGIVT------------------------TDNA 54 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhh-------hheeEEEE------------------------cCCc
Confidence 4568999999999999999998776666554333211 11223311 1378
Q ss_pred eEEEEeCCCCcc--------hHHHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~d--------f~~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
++.++||||... ...++..++..+|.+++|||+.+ .++. ..|.++++||+|+.
T Consensus 55 QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~ 127 (298)
T COG1159 55 QIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKV 127 (298)
T ss_pred eEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccC
Confidence 999999999532 45668889999999999999998 2333 24667799999977
No 111
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.34 E-value=2.9e-12 Score=140.70 Aligned_cols=103 Identities=25% Similarity=0.348 Sum_probs=85.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
....|||+|++++|||||+|+|+.....|....+| +|+++-.+.+.|. +
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aG---------------TTRD~I~~~~e~~----------------~ 225 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAG---------------TTRDSIDIEFERD----------------G 225 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCC---------------ccccceeeeEEEC----------------C
Confidence 35789999999999999999998888888776665 5777777777775 7
Q ss_pred eeEEEEeCCCCc----------ch-HHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHV----------DF-SSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~----------df-~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~ 151 (831)
.++.+|||.|.. .| ...+..|+..||.+++|+||.+ +...+.+.+|++||+|+.
T Consensus 226 ~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~ 302 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLV 302 (444)
T ss_pred eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 899999999953 23 2347788899999999999998 445567778899999987
No 112
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.31 E-value=1.1e-11 Score=119.81 Aligned_cols=119 Identities=25% Similarity=0.276 Sum_probs=88.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.-.|+|.|..|+||||+++++......+.....- .+... ..|..|+.....++.+. .++
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~----~~s~k--~kr~tTva~D~g~~~~~---------------~~~ 68 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADAS----SVSGK--GKRPTTVAMDFGSIELD---------------EDT 68 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecccc----ccccc--cccceeEeecccceEEc---------------Ccc
Confidence 3579999999999999999998777655432110 00000 04557776666666664 358
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------HhhhCC-Cc-EEEEecCcchhhccCCCHHHH
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALGERI-RP-VLTVNKMDRCFLELQVDGEEA 162 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~~~~-~~-ii~iNKiD~~~~~~~~~~~~~ 162 (831)
.++|.|||||.+|..-....++.++|||++||++. .+.... +| +|++||.|+. ++.+.+.
T Consensus 69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~----~a~ppe~ 141 (187)
T COG2229 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLF----DALPPEK 141 (187)
T ss_pred eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccC----CCCCHHH
Confidence 99999999999999999999999999999999997 223333 45 5599999999 8765443
No 113
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.31 E-value=5.4e-12 Score=132.48 Aligned_cols=295 Identities=19% Similarity=0.289 Sum_probs=183.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceE-EecCchhhheeceeeeeceeEEEEeechhhhhccccc------
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR-MTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE------ 92 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~-~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~------ 92 (831)
..|+++|.+|+|||||+..| ..|.++.. .|.++ .+-....|.|.|-|-....--+.|..-.+.++.++++
T Consensus 134 ~RVAVVGNVDAGKSTLLGVL--THgeLDnG-RG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVL--THGELDNG-RGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred EEEEEEecccCCcceeEeee--eecccccC-ccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 35999999999999999988 33444432 23222 3445677888888877766666665444444443321
Q ss_pred ---cCCCCeeEEEEeCCCCcchHHHHHHHhh--hcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhcc
Q 003316 93 ---RQGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLEL 155 (831)
Q Consensus 93 ---~~~~~~~inliDTPGh~df~~ev~~al~--~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~ 155 (831)
.+.....|++||-.||+.|...+..++. ..|..+|+|-++. ++.-.+|..+|++|||++
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMC---- 286 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMC---- 286 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccC----
Confidence 2234458999999999999998888874 7899999999987 566677778899999998
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceee--eccCcceeEEeehhHHHHhhhhcCCChHHHHHHhh
Q 003316 156 QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVA--FSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLW 233 (831)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~--~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw 233 (831)
.++ .+++.+..+...+.+ |-...+| ..|-.
T Consensus 287 PAN------iLqEtmKll~rllkS------------~gcrK~PvlVrs~D------------------------------ 318 (641)
T KOG0463|consen 287 PAN------ILQETMKLLTRLLKS------------PGCRKLPVLVRSMD------------------------------ 318 (641)
T ss_pred cHH------HHHHHHHHHHHHhcC------------CCcccCcEEEeccc------------------------------
Confidence 665 344444433333321 2111122 11110
Q ss_pred cccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcc
Q 003316 234 GENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTW 313 (831)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~ 313 (831)
| +.- ....|....+.||+++... +.+.
T Consensus 319 -D---------Vv~-------~A~NF~Ser~CPIFQvSNV--------------------tG~N---------------- 345 (641)
T KOG0463|consen 319 -D---------VVH-------AAVNFPSERVCPIFQVSNV--------------------TGTN---------------- 345 (641)
T ss_pred -c---------eEE-------eeccCccccccceEEeccc--------------------cCCC----------------
Confidence 0 000 0112333344444422221 1111
Q ss_pred cccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecC
Q 003316 314 LPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVAT 393 (831)
Q Consensus 314 ~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~ 393 (831)
-+||.++.+.+|.-.. .+.+.|.-..|-.+++.+..|. ++-+-.++|+++-
T Consensus 346 ----L~LLkmFLNlls~R~~------------------------~~E~~PAeFQIDD~Y~VpGVGT-vvSGT~L~GtIrL 396 (641)
T KOG0463|consen 346 ----LPLLKMFLNLLSLRRQ------------------------LNENDPAEFQIDDIYWVPGVGT-VVSGTLLSGTIRL 396 (641)
T ss_pred ----hHHHHHHHhhcCcccc------------------------cccCCCcceeecceEecCCcce-EeecceeeeeEEe
Confidence 2566677766655321 1234566667778888888887 8889999999999
Q ss_pred CCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEE--EEeccccccccce-eeecCCC
Q 003316 394 GLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV--AMVGLDQYITKNA-TLTNEKE 460 (831)
Q Consensus 394 g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIv--ai~gl~~~~~~tg-Tl~~~~~ 460 (831)
+|.+.. |+... | ++....|+.|. ++..+|..+.+|+-. |+.+++....+-| .+.+++.
T Consensus 397 ND~LlL-GPd~~-G---~F~pI~iKSIH----RKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~l 457 (641)
T KOG0463|consen 397 NDILLL-GPDSN-G---DFMPIPIKSIH----RKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKL 457 (641)
T ss_pred ccEEEe-cCCCC-C---Ceeeeehhhhh----hccccceEEeccchhhhHhhhcchhhhhcceEEecCCC
Confidence 999874 44322 1 23334555543 467789999999874 5667776656777 7776653
No 114
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.30 E-value=8.7e-12 Score=142.90 Aligned_cols=102 Identities=27% Similarity=0.301 Sum_probs=74.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|+.++|||||+++|+.....+... ..|+|..+....+.+. +.
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~----------------~~ 220 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSD---------------IAGTTRDSIDIPFERN----------------GK 220 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCC---------------CCCceECcEeEEEEEC----------------Cc
Confidence 4689999999999999999997655433322 2345665555555553 56
Q ss_pred eEEEEeCCCCcchH-----------HHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~-----------~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~ 151 (831)
.+.++||||+.++. ..+..+++.+|++|+|+|+.+ +...+.|.++|+||+|+.
T Consensus 221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 89999999975542 224567899999999999987 223345666799999986
No 115
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.28 E-value=1.3e-11 Score=121.92 Aligned_cols=103 Identities=18% Similarity=0.286 Sum_probs=71.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.++|+++|+.|+|||||+++|+.. .... +....++.......+.+. +...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~--~~~~--------------~~~~t~~~~~~~~~~~~~--------------~~~~ 52 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSG--TFSE--------------RQGNTIGVDFTMKTLEIE--------------GKRV 52 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhC--CCcc--------------cCCCccceEEEEEEEEEC--------------CEEE
Confidence 589999999999999999998442 1111 000111112222233332 1246
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh----CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~----~~~~ii~iNKiD~~ 151 (831)
.++|+||||+.+|.......++.+|++++|+|+.+ .+.. ..|+++|+||+|+.
T Consensus 53 ~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 53 KLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 88999999999999888899999999999999997 1111 23456699999986
No 116
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.4e-12 Score=132.02 Aligned_cols=122 Identities=28% Similarity=0.389 Sum_probs=90.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEE-eechhh------hhcc
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYY-EMTDAA------LKSY 89 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~-~~~~~~------~~~~ 89 (831)
+...||+-+||+.|||||++.++ .| ..+-....|-||+|||+.++..-.. ...+.. ++++
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAi-----------SG--v~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~ 102 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAI-----------SG--VHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSF 102 (466)
T ss_pred eeeeeecceeccccCcceeeeee-----------cc--ceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhcc
Confidence 55789999999999999999988 55 2233456788999999998877653 333322 2222
Q ss_pred --------ccccCCCC------eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--------------HhhhCCCc
Q 003316 90 --------RGERQGNE------YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--------------ALGERIRP 141 (831)
Q Consensus 90 --------~~~~~~~~------~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~--------------~~~~~~~~ 141 (831)
.|..-+.. +++.++|||||.-++..+..+..++|+|+|+|.+++ .+..-+..
T Consensus 103 gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhi 182 (466)
T KOG0466|consen 103 GSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHI 182 (466)
T ss_pred CCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceE
Confidence 11111111 368999999999999999999999999999999998 12234555
Q ss_pred EEEEecCcch
Q 003316 142 VLTVNKMDRC 151 (831)
Q Consensus 142 ii~iNKiD~~ 151 (831)
+++-||+|+.
T Consensus 183 iilQNKiDli 192 (466)
T KOG0466|consen 183 IILQNKIDLI 192 (466)
T ss_pred EEEechhhhh
Confidence 6799999988
No 117
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.28 E-value=1.2e-10 Score=140.39 Aligned_cols=100 Identities=25% Similarity=0.355 Sum_probs=70.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++||+|+|||||+|+|..... + .|. -.|.|++.....+.+. ++.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~---~--vgn-----------~pGvTve~k~g~~~~~----------------~~~ 51 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ---R--VGN-----------WAGVTVERKEGQFSTT----------------DHQ 51 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC---c--cCC-----------CCCceEeeEEEEEEcC----------------ceE
Confidence 5799999999999999999943221 1 221 1356665555555553 789
Q ss_pred EEEEeCCCCcchHH--------HHHH--Hh--hhcCeEEEEEecHH---------Hhhh-CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSS--------EVTA--AL--RITDGALVVVDCIE---------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~--------ev~~--al--~~~D~avlVvda~~---------~~~~-~~~~ii~iNKiD~~ 151 (831)
++++||||+.+|.. |... .+ ..+|++++|+|++. .+.+ +.|.++++||+|+.
T Consensus 52 i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIA 125 (772)
T ss_pred EEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhh
Confidence 99999999988853 2211 11 36899999999987 2233 45556699999986
No 118
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.27 E-value=4e-11 Score=118.49 Aligned_cols=102 Identities=27% Similarity=0.358 Sum_probs=68.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|+.|+|||||+++|+.....+... .++.|.......+.+. +.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~----------------~~ 50 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD---------------IAGTTRDSIDVPFEYD----------------GK 50 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC---------------CCCCccCceeeEEEEC----------------Ce
Confidence 3689999999999999999996543322111 1233333332333332 56
Q ss_pred eEEEEeCCCCcchH-----------HHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~-----------~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~ 151 (831)
.+++|||||+.++. .....+++.+|++++|+|+.. ....+.|.++++||+|+.
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 126 (174)
T cd01895 51 KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLV 126 (174)
T ss_pred eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccC
Confidence 78999999976541 223456789999999999876 122345556699999987
No 119
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.25 E-value=1.9e-11 Score=119.01 Aligned_cols=98 Identities=27% Similarity=0.269 Sum_probs=67.4
Q ss_pred EEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeEEE
Q 003316 23 SVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINL 102 (831)
Q Consensus 23 ~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inl 102 (831)
+++|+.|+|||||+++|+........ ...++|.......+.+. ++.+++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~----------------~~~~~i 49 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE---------------DTPGVTRDRIYGEAEWG----------------GREFIL 49 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec---------------CCCCceeCceeEEEEEC----------------CeEEEE
Confidence 58999999999999999643211111 11233433333333332 678999
Q ss_pred EeCCCCcchHH--------HHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 103 IDSPGHVDFSS--------EVTAALRITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 103 iDTPGh~df~~--------ev~~al~~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
+||||+.++.. +....++.+|++++|+|+.. .+.. +.|.++|+||+|+.
T Consensus 50 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 118 (157)
T cd01894 50 IDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNI 118 (157)
T ss_pred EECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccC
Confidence 99999998543 55677899999999999975 2223 34556699999987
No 120
>PRK15494 era GTPase Era; Provisional
Probab=99.25 E-value=3.8e-11 Score=132.59 Aligned_cols=103 Identities=21% Similarity=0.275 Sum_probs=68.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+++|+.|+|||||+++|+...-.+.....+ .|.......+.+. +
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~---------------tTr~~~~~~~~~~----------------~ 99 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQ---------------TTRSIITGIITLK----------------D 99 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCC---------------CccCcEEEEEEeC----------------C
Confidence 34589999999999999999996543222111122 2222111223332 6
Q ss_pred eeEEEEeCCCCcch--------HHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df--------~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~ 151 (831)
.+++|+||||..+. ......+++.+|++|+|||+.. .+. .+.|+++|+||+|+.
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 78999999997542 2334456889999999999875 122 245777899999986
No 121
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.25 E-value=2.5e-11 Score=133.43 Aligned_cols=101 Identities=28% Similarity=0.289 Sum_probs=80.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
..|+|+|++|.|||||+|+|+...-+|.....| .|.+-......|. ++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pG---------------vTRDr~y~~~~~~----------------~~~ 52 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPG---------------VTRDRIYGDAEWL----------------GRE 52 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCC---------------CccCCccceeEEc----------------Cce
Confidence 579999999999999999997766666555454 5666666777886 778
Q ss_pred EEEEeCCCCcch---------HHHHHHHhhhcCeEEEEEecHH-----------HhhhCCCc-EEEEecCcch
Q 003316 100 INLIDSPGHVDF---------SSEVTAALRITDGALVVVDCIE-----------ALGERIRP-VLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df---------~~ev~~al~~~D~avlVvda~~-----------~~~~~~~~-ii~iNKiD~~ 151 (831)
|.+|||+|..+. ..++..|+..||++|||||+.+ .+++..+| ++|+||+|-.
T Consensus 53 f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 53 FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 999999998743 2458889999999999999998 45555455 5699999965
No 122
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.9e-11 Score=138.02 Aligned_cols=121 Identities=26% Similarity=0.361 Sum_probs=81.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcc--ccccCCC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY--RGERQGN 96 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~--~~~~~~~ 96 (831)
...+||+||+|+|||-|++.+...+ +....+| |||.+.+.+.|...+-...-+.. +....-+
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tN--Vqegeag--------------gitqqIgAt~fp~~ni~e~tk~~~~~~K~~~k 538 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTN--VQEGEAG--------------GITQQIGATYFPAENIREKTKELKKDAKKRLK 538 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccc--ccccccc--------------ceeeeccccccchHHHHHHHHHHHhhhhhhcC
Confidence 3578999999999999999994431 1111133 67777766655432100000000 0000111
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------HhhhCCCc-EEEEecCcchhhcc
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALGERIRP-VLTVNKMDRCFLEL 155 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~~~~~~-ii~iNKiD~~~~~~ 155 (831)
--.+.+||||||..|..-..++...||.||+|||... .++.++.| ||++||+||++-+-
T Consensus 539 vPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk 609 (1064)
T KOG1144|consen 539 VPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWK 609 (1064)
T ss_pred CCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccc
Confidence 2257899999999999999999999999999999987 56666555 56999999997543
No 123
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.23 E-value=3.5e-10 Score=130.80 Aligned_cols=103 Identities=22% Similarity=0.348 Sum_probs=71.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
..++|+++|++|+|||||+++|+.....+..... |+|.+.....+.+. +
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~---------------gtT~d~~~~~~~~~----------------~ 258 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVA---------------GTTVDPVDSLIELG----------------G 258 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCC---------------CccCCcceEEEEEC----------------C
Confidence 4689999999999999999999755433222222 34544444444443 6
Q ss_pred eeEEEEeCCCCc---------chHHHH--HHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHV---------DFSSEV--TAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~---------df~~ev--~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~ 151 (831)
..+.|+||||.. +|...+ ..+++.+|++|+|+|+.+ ....+.|.|+|+||+|+.
T Consensus 259 ~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 259 KTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLV 335 (472)
T ss_pred EEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 678999999952 333332 356789999999999986 222345556799999987
No 124
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.22 E-value=9.9e-11 Score=120.09 Aligned_cols=118 Identities=19% Similarity=0.356 Sum_probs=76.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
++|.++|+.|+|||||+.+|.... .. .+ + .++......+... ....+..
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~--~~----~t--~-----------~s~~~~~~~~~~~------------~~~~~~~ 49 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGK--YR----ST--V-----------TSIEPNVATFILN------------SEGKGKK 49 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC--CC----Cc--c-----------CcEeecceEEEee------------cCCCCce
Confidence 479999999999999999995431 11 10 0 0111111111111 0123568
Q ss_pred EEEEeCCCCcchHHHHHHHhhhc-CeEEEEEecHH--------------Hhh------hCCCcEEEEecCcchhhccCCC
Q 003316 100 INLIDSPGHVDFSSEVTAALRIT-DGALVVVDCIE--------------ALG------ERIRPVLTVNKMDRCFLELQVD 158 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~-D~avlVvda~~--------------~~~------~~~~~ii~iNKiD~~~~~~~~~ 158 (831)
+.|+|||||.+|.......++.+ +++|+|||+.. .+. .+.|.++++||+|+. .+.
T Consensus 50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~----~a~ 125 (203)
T cd04105 50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF----TAK 125 (203)
T ss_pred EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc----ccC
Confidence 99999999999999888899998 99999999975 111 134445699999998 654
Q ss_pred H-HHHHHHHHHHHHH
Q 003316 159 G-EEAYQTFQKVIEN 172 (831)
Q Consensus 159 ~-~~~~~~l~~~~~~ 172 (831)
+ +.+.+.+.+-++.
T Consensus 126 ~~~~i~~~le~ei~~ 140 (203)
T cd04105 126 PAKKIKEQLEKELNT 140 (203)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3 3444455544443
No 125
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.22 E-value=4.3e-11 Score=117.71 Aligned_cols=89 Identities=20% Similarity=0.306 Sum_probs=63.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
++|+++|+.|+|||||+++|. |... . + . ....+.|. ..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~-----------~~~~-~-----~------~--~~~~v~~~----------------~~- 39 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQ-----------GNYT-L-----A------R--KTQAVEFN----------------DK- 39 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHc-----------CCCc-c-----C------c--cceEEEEC----------------CC-
Confidence 579999999999999999983 2100 0 0 0 11223342 11
Q ss_pred EEEEeCCCC----cchHHHHHHHhhhcCeEEEEEecHH--------Hhh--hCCCcEEEEecCcch
Q 003316 100 INLIDSPGH----VDFSSEVTAALRITDGALVVVDCIE--------ALG--ERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh----~df~~ev~~al~~~D~avlVvda~~--------~~~--~~~~~ii~iNKiD~~ 151 (831)
++|||||. .++..++..+++.+|++++|+|+.+ .+. ...|.++++||+|+.
T Consensus 40 -~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 40 -GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMP 104 (158)
T ss_pred -CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccC
Confidence 37999995 6788888888999999999999986 121 233446699999987
No 126
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.21 E-value=4.3e-11 Score=116.39 Aligned_cols=100 Identities=23% Similarity=0.281 Sum_probs=68.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|++|+|||||+++|+......... ..++|.......+.+. +..+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~----------------~~~~ 51 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSD---------------IAGTTRDVIEESIDIG----------------GIPV 51 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccC---------------CCCCccceEEEEEEeC----------------CEEE
Confidence 68999999999999999996543221111 1233333323333332 6789
Q ss_pred EEEeCCCCcchHHH--------HHHHhhhcCeEEEEEecHH--------Hhh--hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIE--------ALG--ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~e--------v~~al~~~D~avlVvda~~--------~~~--~~~~~ii~iNKiD~~ 151 (831)
+++||||+.++... +...++.+|++++|+|+.. .+. .+.|.++++||+|+.
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~ 120 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLL 120 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcC
Confidence 99999999877432 4457789999999999995 222 234556699999987
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.21 E-value=1.3e-10 Score=117.19 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=75.2
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhh
Q 003316 8 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 87 (831)
Q Consensus 8 ~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~ 87 (831)
.+..+++...+-.+|+++|..|+|||||+++|.... ... .. .|.......+.+.
T Consensus 6 ~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~--~~~----------~~-------~t~~~~~~~~~~~------- 59 (184)
T smart00178 6 DILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDR--LAQ----------HQ-------PTQHPTSEELAIG------- 59 (184)
T ss_pred HHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCC--Ccc----------cC-------CccccceEEEEEC-------
Confidence 344466555556889999999999999999995321 100 00 0111111223332
Q ss_pred ccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcc
Q 003316 88 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDR 150 (831)
Q Consensus 88 ~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~ 150 (831)
+..++++||||+..+.......++.+|++|+|+|+.+ .+. .+.|.++++||+|+
T Consensus 60 ---------~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl 130 (184)
T smart00178 60 ---------NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDA 130 (184)
T ss_pred ---------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence 6789999999999998888888999999999999875 111 23445669999998
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
+
T Consensus 131 ~ 131 (184)
T smart00178 131 P 131 (184)
T ss_pred c
Confidence 7
No 128
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.21 E-value=4.4e-11 Score=113.45 Aligned_cols=88 Identities=25% Similarity=0.342 Sum_probs=66.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
+.|.++|+++||||||+++|........+ |. .+.| .
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~K--------------------Tq-----~i~~-------------------~ 37 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKK--------------------TQ-----AIEY-------------------Y 37 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCc--------------------cc-----eeEe-------------------c
Confidence 57999999999999999999333221111 11 1222 2
Q ss_pred EEEEeCCC----CcchHHHHHHHhhhcCeEEEEEecHH--------HhhhCCCcEE-EEecCcch
Q 003316 100 INLIDSPG----HVDFSSEVTAALRITDGALVVVDCIE--------ALGERIRPVL-TVNKMDRC 151 (831)
Q Consensus 100 inliDTPG----h~df~~ev~~al~~~D~avlVvda~~--------~~~~~~~~ii-~iNKiD~~ 151 (831)
=++||||| +..|...++.....||.+++|.|+++ ......+|+| ||||+|+.
T Consensus 38 ~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 38 DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCc
Confidence 25699999 67899999999999999999999998 3344457777 99999987
No 129
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.20 E-value=9.8e-11 Score=114.81 Aligned_cols=96 Identities=21% Similarity=0.205 Sum_probs=67.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.++|||||+++|.... ... +.+ |+......+.+ .+..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~--~~~----------~~~-------t~~~~~~~~~~----------------~~~~~ 45 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE--VVT----------TIP-------TIGFNVETVTY----------------KNLKF 45 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC--CcC----------cCC-------ccCcCeEEEEE----------------CCEEE
Confidence 48999999999999999994321 110 000 11111122333 26789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh----CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~----~~~~ii~iNKiD~~ 151 (831)
+++||||+.+|.......++.+|++|+|+|+.+ .+.. +.|.++|+||+|+.
T Consensus 46 ~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 46 QVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred EEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 999999999998888888999999999999964 1111 34456699999987
No 130
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.19 E-value=9.2e-11 Score=115.07 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=68.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..++|||||+++|......... +.. .-|.++ ..+.+ .+..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~-------~~~------t~g~~~----~~~~~----------------~~~~~ 47 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI-------IVP------TVGFNV----ESFEK----------------GNLSF 47 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce-------ecC------ccccce----EEEEE----------------CCEEE
Confidence 5899999999999999999542111100 000 012111 12222 36789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh------hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~------~~~~~ii~iNKiD~~ 151 (831)
+++||||+.+|.......++.+|++|+|+|+.+ .+. .+.|.++|+||+|+.
T Consensus 48 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 48 TAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred EEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 999999999999888889999999999999975 111 134556699999987
No 131
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.19 E-value=9.2e-11 Score=116.12 Aligned_cols=108 Identities=16% Similarity=0.254 Sum_probs=73.5
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccccc
Q 003316 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (831)
Q Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (831)
.+.+..++|+++|+.|+|||||+++|... ..... .+ ..++.......+.+.
T Consensus 2 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~--~~~~~-~~-------------~t~~~~~~~~~~~~~------------- 52 (169)
T cd04114 2 EDYDFLFKIVLIGNAGVGKTCLVRRFTQG--LFPPG-QG-------------ATIGVDFMIKTVEIK------------- 52 (169)
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHHhC--CCCCC-CC-------------CceeeEEEEEEEEEC-------------
Confidence 33456789999999999999999998532 11110 11 111222222233332
Q ss_pred CCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh---h-CCCcEEEEecCcch
Q 003316 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG---E-RIRPVLTVNKMDRC 151 (831)
Q Consensus 94 ~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~---~-~~~~ii~iNKiD~~ 151 (831)
+....+.++||||+.+|.......++.+|++++|+|... .+. . ..|.++++||+|+.
T Consensus 53 -~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 53 -GEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred -CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 224578899999999999998999999999999999874 111 1 34446799999976
No 132
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.17 E-value=1.3e-10 Score=134.24 Aligned_cols=115 Identities=21% Similarity=0.313 Sum_probs=79.2
Q ss_pred HHHHHHhhc-ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechh
Q 003316 6 AEELRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA 84 (831)
Q Consensus 6 ~~~~~~~~~-~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~ 84 (831)
-+++..+.. +..++.+|+|+|++|+|||||+++|+.....+... ..|+|.+.....+.|.
T Consensus 24 ~~~~~~~~~~~~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~---------------~~gvT~d~~~~~~~~~---- 84 (472)
T PRK03003 24 DEDLAELEAAEGGPLPVVAVVGRPNVGKSTLVNRILGRREAVVED---------------VPGVTRDRVSYDAEWN---- 84 (472)
T ss_pred hhhHHhhhcccCCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccC---------------CCCCCEeeEEEEEEEC----
Confidence 345544432 33567899999999999999999996543322221 1244544434444553
Q ss_pred hhhccccccCCCCeeEEEEeCCCCcc--------hHHHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCcEEE
Q 003316 85 ALKSYRGERQGNEYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIE-----------ALGE-RIRPVLT 144 (831)
Q Consensus 85 ~~~~~~~~~~~~~~~inliDTPGh~d--------f~~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~ii~ 144 (831)
+..++|+||||+.. |...+..+++.||++|+|+|+.. .+.. +.|.++|
T Consensus 85 ------------~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV 152 (472)
T PRK03003 85 ------------GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILA 152 (472)
T ss_pred ------------CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEE
Confidence 66899999999763 45556778999999999999985 2333 3455669
Q ss_pred EecCcch
Q 003316 145 VNKMDRC 151 (831)
Q Consensus 145 iNKiD~~ 151 (831)
+||+|+.
T Consensus 153 ~NK~Dl~ 159 (472)
T PRK03003 153 ANKVDDE 159 (472)
T ss_pred EECccCC
Confidence 9999987
No 133
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.17 E-value=1.8e-10 Score=114.02 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=64.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
||+++|+.|+|||||+++|......+.. .. +.|.......+.+. +...+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~-~~---------------~~t~~~~~~~~~~~---------------~~~~~ 50 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD-YP---------------FTTLVPNLGVVRVD---------------DGRSF 50 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC-CC---------------ccccCCcceEEEcC---------------CCCeE
Confidence 7999999999999999999543221111 01 12222222223332 12389
Q ss_pred EEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH-------------Hhh------hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE-------------ALG------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~-------------~~~------~~~~~ii~iNKiD~~ 151 (831)
+|+||||+.+ +.....+.++.+|++++|+|+.. .+. ...|.++|+||+|+.
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 9999999742 34455566778999999999962 121 134557799999986
No 134
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.16 E-value=4.5e-11 Score=116.66 Aligned_cols=96 Identities=23% Similarity=0.286 Sum_probs=67.3
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeEEEE
Q 003316 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLI 103 (831)
Q Consensus 24 ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inli 103 (831)
++|+.|+|||||++++......+ ....|+|+......+.+. +..++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~----------------~~~~~li 48 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKV----------------GNWPGVTVEKKEGRFKLG----------------GKEIEIV 48 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccc----------------cCCCCcccccceEEEeeC----------------CeEEEEE
Confidence 58999999999999994321110 012466776666666664 5689999
Q ss_pred eCCCCcchHHH------HHHHh--hhcCeEEEEEecHH---------Hhh-hCCCcEEEEecCcch
Q 003316 104 DSPGHVDFSSE------VTAAL--RITDGALVVVDCIE---------ALG-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 104 DTPGh~df~~e------v~~al--~~~D~avlVvda~~---------~~~-~~~~~ii~iNKiD~~ 151 (831)
||||+.+|... ....+ ..+|++|+|+|+.. .+. .+.|.++++||+|+.
T Consensus 49 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 49 DLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred ECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhc
Confidence 99999887642 23334 38999999999987 122 344556699999987
No 135
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.16 E-value=2.2e-10 Score=116.01 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=75.8
Q ss_pred HHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhc
Q 003316 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 88 (831)
Q Consensus 9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~ 88 (831)
+.+.|+...+..+|+++|+.|+|||||+++|.... .... ..|+......+.+.
T Consensus 9 ~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~--~~~~-----------------~~T~~~~~~~i~~~-------- 61 (190)
T cd00879 9 VLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDR--LAQH-----------------VPTLHPTSEELTIG-------- 61 (190)
T ss_pred HHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCC--Cccc-----------------CCccCcceEEEEEC--------
Confidence 34456656667889999999999999999984321 1110 00111122234443
Q ss_pred cccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 89 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 89 ~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+..++++||||+.+|.......++.+|++++|+|+.+ .+. .+.|.++++||+|+.
T Consensus 62 --------~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 62 --------NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred --------CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 6789999999999998887888999999999999975 111 124556699999986
No 136
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.16 E-value=2.1e-10 Score=123.05 Aligned_cols=100 Identities=30% Similarity=0.292 Sum_probs=66.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
.|+++|++|+|||||+++|+...-.+.....++++ ...+|+ ... .+.++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-------~~i~~i---------~~~---------------~~~qi 50 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-------NRISGI---------HTT---------------GASQI 50 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-------CcEEEE---------EEc---------------CCcEE
Confidence 48999999999999999997554322222122110 011121 111 25679
Q ss_pred EEEeCCCCcch--------HHHHHHHhhhcCeEEEEEecHH----------HhhhCC-CcEEEEecCcch
Q 003316 101 NLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIE----------ALGERI-RPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df--------~~ev~~al~~~D~avlVvda~~----------~~~~~~-~~ii~iNKiD~~ 151 (831)
.|+||||+.+. ...+..+++.+|++++|+|+.. .+.... |.++|+||+|+.
T Consensus 51 i~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 51 IFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred EEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCC
Confidence 99999997542 3345678899999999999986 223334 446699999976
No 137
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.16 E-value=1.3e-10 Score=115.65 Aligned_cols=103 Identities=22% Similarity=0.289 Sum_probs=68.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
+.+|+++|+.|+|||||+++++.. .... +....+........+.+. +..+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~--~~~~--------------~~~~t~~~~~~~~~~~~~--------------~~~~ 51 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAG--RFPE--------------RTEATIGVDFRERTVEID--------------GERI 51 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC--CCCC--------------ccccceeEEEEEEEEEEC--------------CeEE
Confidence 578999999999999999999532 1110 011111121112223332 2357
Q ss_pred eEEEEeCCCCcchHHH-HHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~e-v~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
.++++||||+.+|... ....++.+|++++|+|+.. .+. ...|.++|.||+|+.
T Consensus 52 ~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 52 KVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred EEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 8999999999998743 5566789999999999986 111 124556699999986
No 138
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.16 E-value=3.5e-10 Score=113.04 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=73.9
Q ss_pred HHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhc
Q 003316 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 88 (831)
Q Consensus 9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~ 88 (831)
+.+++... ..++|+++|+.++|||||+++|.... ... . .-|+......+.+.
T Consensus 6 ~~~~~~~~-~~~kv~~~G~~~~GKTsl~~~l~~~~--~~~----------~-------~~t~~~~~~~~~~~-------- 57 (174)
T cd04153 6 LWSLFFPR-KEYKVIIVGLDNAGKTTILYQFLLGE--VVH----------T-------SPTIGSNVEEIVYK-------- 57 (174)
T ss_pred HHHHhcCC-CccEEEEECCCCCCHHHHHHHHccCC--CCC----------c-------CCccccceEEEEEC--------
Confidence 34444432 35689999999999999999994321 110 0 01222222233342
Q ss_pred cccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh----CCCcEEEEecCcch
Q 003316 89 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 89 ~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~----~~~~ii~iNKiD~~ 151 (831)
+..+.++||||+..|.......++.+|++|+|+|+++ .+.. ..|.++++||+|+.
T Consensus 58 --------~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 58 --------NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred --------CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 6789999999999998888888999999999999975 1111 23446699999987
No 139
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.16 E-value=2.2e-10 Score=112.85 Aligned_cols=101 Identities=18% Similarity=0.324 Sum_probs=68.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.++|||||+++++... ..... ....+.++.... ... ++....+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~~~~~------------~~~~~~~~~~~~--~~~--------------~~~~~~~ 51 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDG--YEPQQ------------LSTYALTLYKHN--AKF--------------EGKTILV 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCCc------------CCceeeEEEEEE--EEE--------------CCEEEEE
Confidence 68999999999999999996432 11100 000111221111 111 1236789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh---CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~---~~~~ii~iNKiD~~ 151 (831)
+++||||+..|.......++.+|++|+|+|+.+ .+.+ ..|.++++||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 999999999999988899999999999999875 1222 34556699999975
No 140
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.16 E-value=1.7e-10 Score=113.46 Aligned_cols=101 Identities=19% Similarity=0.258 Sum_probs=69.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-+|+++|..|+|||||+++++..... .....+ ... .. ...+.+. +....
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t---------~~~---~~---~~~~~~~--------------~~~~~ 51 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPT---------IED---SY---TKQCEID--------------GQWAI 51 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cccCCC---------ccc---eE---EEEEEEC--------------CEEEE
Confidence 47999999999999999999764321 100110 000 00 0111221 22467
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----h-CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----E-RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~-~~~~ii~iNKiD~~ 151 (831)
++++||||+.+|.......++.+|++++|+|+.+ .+. . ..|.++++||+|+.
T Consensus 52 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 52 LDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred EEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 8999999999999988899999999999999986 111 1 23446699999986
No 141
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.16 E-value=1.3e-10 Score=112.87 Aligned_cols=99 Identities=28% Similarity=0.382 Sum_probs=66.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|.+|+|||||+|+|....-.+. .+ .|.|+......+.+. +..+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~----------n~------pG~Tv~~~~g~~~~~----------------~~~~ 49 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVG----------NW------PGTTVEKKEGIFKLG----------------DQQV 49 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEE----------ES------TTSSSEEEEEEEEET----------------TEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceec----------CC------CCCCeeeeeEEEEec----------------CceE
Confidence 699999999999999999955432211 11 255666655666664 6899
Q ss_pred EEEeCCCCcch---H-HH--HHHHh--hhcCeEEEEEecHH---------H-hhhCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDF---S-SE--VTAAL--RITDGALVVVDCIE---------A-LGERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df---~-~e--v~~al--~~~D~avlVvda~~---------~-~~~~~~~ii~iNKiD~~ 151 (831)
.|+||||.-++ + .| +...+ ...|++|+|+||.. . +..+.|.++++||+|..
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 99999995433 1 12 22233 47999999999997 2 33455667799999987
No 142
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.16 E-value=8.7e-11 Score=134.67 Aligned_cols=100 Identities=25% Similarity=0.258 Sum_probs=73.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
.|+|+|++|+|||||+++|+.....+.... .|+|.......+.|. +..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~---------------~g~t~d~~~~~~~~~----------------~~~~ 49 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDT---------------PGVTRDRKYGDAEWG----------------GREF 49 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCC---------------CCcccCceEEEEEEC----------------CeEE
Confidence 389999999999999999965443222211 245555555566664 6789
Q ss_pred EEEeCCCCc--------chHHHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 101 NLIDSPGHV--------DFSSEVTAALRITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~--------df~~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
+||||||+. .+...+..+++.+|++++|+|+.+ .+++ +.|.++|+||+|..
T Consensus 50 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~ 120 (429)
T TIGR03594 50 ILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGK 120 (429)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCC
Confidence 999999983 355667889999999999999975 3333 34556699999987
No 143
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.15 E-value=2.5e-10 Score=112.08 Aligned_cols=101 Identities=22% Similarity=0.253 Sum_probs=69.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.|+|||||+++|+...- .. +..+.++.......+.+. +....+
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------------~~~~~~ 51 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF--SE--------------QYKSTIGVDFKTKTIEVD--------------GKRVKL 51 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC--------------CCCCceeeEEEEEEEEEC--------------CEEEEE
Confidence 699999999999999999953321 10 001112222222223332 124689
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------Hhh-------hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------ALG-------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~~~-------~~~~~ii~iNKiD~~ 151 (831)
+++||||+..|.......++.+|++|+|+|+.. .+. ...|.++|+||+|+.
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 52 QIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred EEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 999999999999888999999999999999986 111 123445699999976
No 144
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.14 E-value=2.4e-10 Score=113.43 Aligned_cols=96 Identities=22% Similarity=0.265 Sum_probs=68.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..++|||||+++|... .... . .-|+......+.+ .++.+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~~~--~---------------~~t~g~~~~~~~~----------------~~~~~ 45 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IPKK--V---------------APTVGFTPTKLRL----------------DKYEV 45 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CCcc--c---------------cCcccceEEEEEE----------------CCEEE
Confidence 4899999999999999998432 1110 0 0111111123333 26789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+++||||+..|.......++.+|++|+|+|+.+ .+. .+.|.++|+||+|+.
T Consensus 46 ~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 46 CIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred EEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 999999999999888889999999999999876 111 123445699999987
No 145
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.13 E-value=3.8e-10 Score=112.52 Aligned_cols=99 Identities=22% Similarity=0.257 Sum_probs=69.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
.-.+|+++|+.++|||||+++|.... ... .+...|.. ...+.+. .
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~--~~~-------------~~~t~g~~----~~~~~~~----------------~ 57 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGED--IDT-------------ISPTLGFQ----IKTLEYE----------------G 57 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC--CCC-------------cCCccccc----eEEEEEC----------------C
Confidence 34679999999999999999995321 100 00111211 1223332 6
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+.++++||||+..|.......++.+|++++|+|+.+ .+. .+.|.++++||+|+.
T Consensus 58 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 58 YKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 789999999999998888888999999999999876 111 233446699999987
No 146
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.13 E-value=1.9e-10 Score=112.93 Aligned_cols=101 Identities=24% Similarity=0.262 Sum_probs=68.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.++|||||+++|+...-.... . ..++.......+.. ++....+
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~--~--------------~~~~~~~~~~~~~~--------------~~~~~~l 51 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS--Q--------------HTIGVEFGSKIIRV--------------GGKRVKL 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC--C--------------CceeeeEEEEEEEE--------------CCEEEEE
Confidence 7999999999999999999643211110 0 01111111111122 1235689
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------H---hh-hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------A---LG-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~---~~-~~~~~ii~iNKiD~~ 151 (831)
+|+||||+.+|.......++.+|++|+|+|+.+ . +. .+.|.++++||+|+.
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 52 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred EEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 999999999999888888999999999999986 1 11 133445699999986
No 147
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.12 E-value=2.5e-10 Score=113.28 Aligned_cols=103 Identities=20% Similarity=0.222 Sum_probs=69.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.-+|+++|+.|+|||||+++++...-.... .. ..|.+.... .+.+. +...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--~~------------t~~~~~~~~--~~~~~--------------~~~~ 53 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DL------------TIGVEFGAR--MITID--------------GKQI 53 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CC------------ccceeEEEE--EEEEC--------------CEEE
Confidence 358999999999999999999543211110 00 011222111 12221 1246
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh----CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~----~~~~ii~iNKiD~~ 151 (831)
.++|+||||+..|.......++.+|++|+|+|+.. .+.. ..|.+++.||+|+.
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 54 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 89999999999998888889999999999999886 1111 23446699999986
No 148
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.12 E-value=2.9e-10 Score=111.26 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=68.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.|+|||||+++++... .... ..|+......+.+. ...+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~~~-----------------~~t~~~~~~~~~~~----------------~~~~ 45 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VVTT-----------------IPTIGFNVETVEYK----------------NVSF 45 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CCCC-----------------CCCcCcceEEEEEC----------------CEEE
Confidence 48999999999999999996543 1100 01111122233332 6789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+++||||+..|.......++.+|++++|+|+.. ... ...|.++|+||+|+.
T Consensus 46 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 113 (158)
T cd00878 46 TVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP 113 (158)
T ss_pred EEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc
Confidence 999999999998888888899999999999985 111 123445699999987
No 149
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.12 E-value=2.5e-10 Score=111.93 Aligned_cols=102 Identities=21% Similarity=0.249 Sum_probs=71.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++|+.++|||||+++|+...-... ...+++.+.....+.+. +....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~~~~ 50 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ----------------YQATIGIDFLSKTMYLE--------------DKTVR 50 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc----------------CCCceeeeEEEEEEEEC--------------CEEEE
Confidence 3799999999999999999964422111 11122332222333332 12467
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh-h-hC--CCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL-G-ER--IRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~-~-~~--~~~ii~iNKiD~~ 151 (831)
++++||||+..|...+...++.+|++++|+|..+ .+ . .. .|.++++||+|+.
T Consensus 51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 9999999999999888889999999999999975 11 1 12 3445699999985
No 150
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.12 E-value=3.4e-10 Score=111.12 Aligned_cols=103 Identities=17% Similarity=0.304 Sum_probs=69.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.++|||||+++|.... ... +....+........+.+. ..+....+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~--~~~--------------~~~~t~~~~~~~~~~~~~------------~~~~~~~~ 53 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGI--FTK--------------DYKKTIGVDFLEKQIFLR------------QSDEDVRL 53 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC--------------CCCCcEEEEEEEEEEEEc------------CCCCEEEE
Confidence 68999999999999999995421 110 000111111111112221 01236789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh---hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~---~~~~~ii~iNKiD~~ 151 (831)
+|+||||+.+|.......++.+|++++|+|+.+ .+. ...|.++++||+|+.
T Consensus 54 ~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 54 MLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred EEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 999999999999888899999999999999876 111 145556799999986
No 151
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.11 E-value=2.3e-10 Score=138.48 Aligned_cols=103 Identities=23% Similarity=0.303 Sum_probs=72.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
..++|+++|+.|+|||||+++|+.....+..... |+|.+.....+.+. +
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~---------------gtT~d~~~~~~~~~----------------~ 497 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLA---------------GTTRDPVDEIVEID----------------G 497 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCC---------------CCCcCcceeEEEEC----------------C
Confidence 4589999999999999999999765433322223 34444444445553 5
Q ss_pred eeEEEEeCCCCc---------chHHH--HHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHV---------DFSSE--VTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~---------df~~e--v~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~ 151 (831)
..++|+||||+. +|... ...+++.+|++|+|+|+.+ ....+.|.++|+||+|+.
T Consensus 498 ~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 498 EDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred CEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 678899999963 33332 3456789999999999986 222355667799999987
No 152
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.11 E-value=2.4e-10 Score=131.29 Aligned_cols=101 Identities=26% Similarity=0.263 Sum_probs=71.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+|+|+.|+|||||+++|+.....+.... -|+|.......+.|. +..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~---------------~~~t~d~~~~~~~~~----------------~~~ 50 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADT---------------PGVTRDRIYGEAEWL----------------GRE 50 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCC---------------CCCcccceEEEEEEC----------------CcE
Confidence 4799999999999999999964432222211 234444444445554 578
Q ss_pred EEEEeCCCCcc----h----HHHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVD----F----SSEVTAALRITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~d----f----~~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
+++|||||+.+ + ...+..+++.+|++|+|+|+.+ .+++ +.|.++|+||+|..
T Consensus 51 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 51 FILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 99999999988 3 3445678899999999999975 2333 34556699999965
No 153
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.10 E-value=2.6e-10 Score=113.13 Aligned_cols=118 Identities=20% Similarity=0.328 Sum_probs=70.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
-+.|.|+|+.|+|||+|.-.|.+.. .. .+ + .++. ..+.+.+ ......
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~--~~----~T--~-----------tS~e-~n~~~~~-------------~~~~~~ 49 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGK--TV----PT--V-----------TSME-NNIAYNV-------------NNSKGK 49 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---------B----------------SS-EEEECCG-------------SSTCGT
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCC--cC----Ce--e-----------cccc-CCceEEe-------------ecCCCC
Confidence 3689999999999999999996641 11 10 0 0111 1111111 012355
Q ss_pred eEEEEeCCCCcchHHHHHHH---hhhcCeEEEEEecHH-------------------HhhhCCCcEE-EEecCcchhhcc
Q 003316 99 LINLIDSPGHVDFSSEVTAA---LRITDGALVVVDCIE-------------------ALGERIRPVL-TVNKMDRCFLEL 155 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~a---l~~~D~avlVvda~~-------------------~~~~~~~~ii-~iNKiD~~~~~~ 155 (831)
.+.+||+|||..+....... +..+-++|+|||+.. ....+.+||+ ++||.|+.
T Consensus 50 ~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~---- 125 (181)
T PF09439_consen 50 KLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF---- 125 (181)
T ss_dssp CECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST----
T ss_pred EEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc----
Confidence 78999999999998887776 889999999999974 1113456665 99999998
Q ss_pred CCC-HHHHHHHHHHHHHHh
Q 003316 156 QVD-GEEAYQTFQKVIENA 173 (831)
Q Consensus 156 ~~~-~~~~~~~l~~~~~~~ 173 (831)
.+- +..+...|++=++.+
T Consensus 126 ~A~~~~~Ik~~LE~Ei~~l 144 (181)
T PF09439_consen 126 TAKPPKKIKKLLEKEIDKL 144 (181)
T ss_dssp T---HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 664 344444555544443
No 154
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.10 E-value=3.2e-10 Score=112.37 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=67.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.++|||||+++|+...- ...... ..|.+.. ...+.+. +....+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~--~~~~~~------------t~~~~~~--~~~~~~~--------------~~~~~~ 51 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKF--SNQYKA------------TIGADFL--TKEVTVD--------------DKLVTL 51 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CcCcCC------------ccceEEE--EEEEEEC--------------CEEEEE
Confidence 689999999999999999955321 100000 0011111 1112222 235678
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--------H-----hhh-------CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--------A-----LGE-------RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~--------~-----~~~-------~~~~ii~iNKiD~~ 151 (831)
+++||||+.+|.......++.+|++|+|+|+.. . +.. +.|.++++||+|+.
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 52 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred EEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 899999999999888889999999999999975 1 111 34456699999987
No 155
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.10 E-value=3.6e-10 Score=109.75 Aligned_cols=96 Identities=22% Similarity=0.209 Sum_probs=66.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeEE
Q 003316 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLIN 101 (831)
Q Consensus 22 I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (831)
|+++|+.|+|||||+++|....- . .++.+ |+......+.+ +...++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~--~---------~~~~~-------t~~~~~~~~~~----------------~~~~~~ 47 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF--S---------EDTIP-------TVGFNMRKVTK----------------GNVTLK 47 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC--C---------cCccC-------CCCcceEEEEE----------------CCEEEE
Confidence 78999999999999999943211 0 01100 11111112222 257899
Q ss_pred EEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 102 liDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
++||||+..|.......++.+|++++|+|+.. .+. .+.|.++++||+|..
T Consensus 48 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 48 VWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred EEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 99999999999888899999999999999975 011 134556699999987
No 156
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.10 E-value=4.9e-10 Score=111.35 Aligned_cols=98 Identities=18% Similarity=0.184 Sum_probs=68.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|+.++|||||+.+|.... ... ..+ .-|.++ ..+.+ .+.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~--~~~----------~~~---t~g~~~----~~~~~----------------~~~ 53 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQ--SVT----------TIP---TVGFNV----ETVTY----------------KNV 53 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCC--Ccc----------ccC---Ccccce----EEEEE----------------CCE
Confidence 3589999999999999999994321 110 000 001111 11222 267
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh----CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~----~~~~ii~iNKiD~~ 151 (831)
.++++||||+..|.......++.+|++|+|+|+.+ .+.. ..|.+|+.||+|+.
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 89999999999998777778899999999999997 1111 23445699999986
No 157
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.10 E-value=7.4e-10 Score=106.93 Aligned_cols=102 Identities=25% Similarity=0.358 Sum_probs=63.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++|+.|+|||||+++|+... .... ...+++.......+.+. +..+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~---------------~~~~~~~~~~~~~~~~~--------------~~~~~ 51 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITE---------------YKPGTTRNYVTTVIEED--------------GKTYK 51 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCc---------------CCCCceeeeeEEEEEEC--------------CEEEE
Confidence 589999999999999999996543 2211 12234444333333332 11378
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEE-------EecHH-----------HhhhCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVV-------VDCIE-----------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlV-------vda~~-----------~~~~~~~~ii~iNKiD~~ 151 (831)
++++||||+.+|........+.++.++.+ +|+.. ....+.|.++++||+|+.
T Consensus 52 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (161)
T TIGR00231 52 FNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLR 121 (161)
T ss_pred EEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCC
Confidence 99999999999955544444445444444 44443 111144556699999987
No 158
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.09 E-value=6.5e-10 Score=112.07 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=67.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
.|+++|+.|+|||||++++++....-.. + ..|.+.. ...+.+. ++....+
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~~~~------------~---t~~~~~~--~~~~~~~-------------~~~~~~l 54 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFVNTV------------P---TKGFNTE--KIKVSLG-------------NSKGITF 54 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCcC------------C---cccccee--EEEeecc-------------CCCceEE
Confidence 5899999999999999999653211000 0 0111111 1112111 1236789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------H---h----h-hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------A---L----G-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~---~----~-~~~~~ii~iNKiD~~ 151 (831)
+++||||+..|.......++.+|++|+|+|+.+ . + . .+.|.++++||+|+.
T Consensus 55 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 55 HFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred EEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 999999999998777777899999999999975 0 1 1 124456699999986
No 159
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.09 E-value=6.7e-10 Score=107.68 Aligned_cols=101 Identities=23% Similarity=0.271 Sum_probs=69.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.++|||||+++|+........ .+..+.......+... +....+
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~~~~~~ 51 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY----------------KSTIGVDFKSKTIEID--------------GKTVKL 51 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc----------------CCceeeeeEEEEEEEC--------------CEEEEE
Confidence 6899999999999999999543221110 0011111111222221 135789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh----CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~----~~~~ii~iNKiD~~ 151 (831)
+++||||+..|.......++.+|++|+|+|+.+ .+.. ..|.++++||+|+.
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 999999999999999999999999999999975 1111 23445699999985
No 160
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.09 E-value=8.2e-10 Score=110.91 Aligned_cols=102 Identities=20% Similarity=0.255 Sum_probs=63.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+|+|+.|+|||||+++|+..... .. +.+ ..|.|.... .+.+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~-------~~~------~~~~t~~~~--~~~~----------------- 62 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKL-AR-------TSK------TPGRTQLIN--FFEV----------------- 62 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCc-cc-------ccC------CCCcceEEE--EEEe-----------------
Confidence 56779999999999999999999654211 00 000 112232211 1111
Q ss_pred CeeEEEEeCCCCc----------chHHHHHHHhh---hcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHV----------DFSSEVTAALR---ITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~----------df~~ev~~al~---~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
+..+.++||||+. +|...+...++ .+|++++|+|+.. .+.. +.|.++++||+|+.
T Consensus 63 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 142 (179)
T TIGR03598 63 NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKL 142 (179)
T ss_pred CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 1268999999963 34433333443 4689999999876 2233 34555699999986
No 161
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.09 E-value=3.5e-10 Score=111.14 Aligned_cols=101 Identities=21% Similarity=0.221 Sum_probs=68.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.++|||||+++|+...-... .....|.+.... .+.+. +....+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~--~v~~~--------------~~~~~~ 52 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSEN--------------QESTIGAAFLTQ--TVNLD--------------DTTVKF 52 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceeEEEE--EEEEC--------------CEEEEE
Confidence 689999999999999999964431110 001112112111 12221 236789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh----CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~----~~~~ii~iNKiD~~ 151 (831)
+++||||+..|.......++.+|++|+|+|+.. .+.. ..|.++++||+|+.
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999999999998887788899999999999975 1111 23345699999976
No 162
>PRK00089 era GTPase Era; Reviewed
Probab=99.08 E-value=9.4e-10 Score=119.47 Aligned_cols=103 Identities=27% Similarity=0.334 Sum_probs=67.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+...|+++|++|+|||||+++|+...-.+.....++++ ...+|+ .. ..+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~-------~~i~~i---------~~---------------~~~ 52 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-------HRIRGI---------VT---------------EDD 52 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccc-------ccEEEE---------EE---------------cCC
Confidence 45689999999999999999996543222211111100 000111 11 124
Q ss_pred eeEEEEeCCCCcch--------HHHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df--------~~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
..+.++||||+.+. ...+..++..+|++++|+|+.. .+.. +.|.++++||+|+.
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 78999999997553 3456678889999999999976 2222 34556699999986
No 163
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.08 E-value=1e-09 Score=108.57 Aligned_cols=99 Identities=20% Similarity=0.226 Sum_probs=67.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.|+|||||+++|+... ....... ..+ ..++ ...+ .+....+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~--~~~~~~~---~~~--------~~~~-----~~~~--------------~~~~~~~ 49 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE--FPENVPR---VLP--------EITI-----PADV--------------TPERVPT 49 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCccCCC---ccc--------ceEe-----eeee--------------cCCeEEE
Confidence 68999999999999999996532 1110000 000 1111 1111 1236789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----H--------hh---hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----A--------LG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-----~--------~~---~~~~~ii~iNKiD~~ 151 (831)
+++||||+.++...+...++.+|++++|+|+.. . +. .+.|.++|+||+|+.
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~ 116 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLR 116 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 999999999888888888899999999999875 1 11 123446699999987
No 164
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.08 E-value=6.3e-10 Score=103.30 Aligned_cols=96 Identities=24% Similarity=0.297 Sum_probs=62.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
.|+|+|.+|+|||||+++|+.......... .+.|.......+.+. +..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~---------------~~~T~~~~~~~~~~~----------------~~~~ 49 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI---------------PGTTRDPVYGQFEYN----------------NKKF 49 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSS---------------TTSSSSEEEEEEEET----------------TEEE
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccc---------------ccceeeeeeeeeeec----------------eeeE
Confidence 489999999999999999974321111111 122333322223332 6678
Q ss_pred EEEeCCCCcc---------hHHHHHHHhhhcCeEEEEEecHH-----------HhhhCCCcEEEEec
Q 003316 101 NLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIE-----------ALGERIRPVLTVNK 147 (831)
Q Consensus 101 nliDTPGh~d---------f~~ev~~al~~~D~avlVvda~~-----------~~~~~~~~ii~iNK 147 (831)
.|+||||..+ ........++.+|++++|+|+.. .++.+.|.++|+||
T Consensus 50 ~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~~~~~~i~v~NK 116 (116)
T PF01926_consen 50 ILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELKNKKPIILVLNK 116 (116)
T ss_dssp EEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHHTTSEEEEEEES
T ss_pred EEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHhcCCCEEEEEcC
Confidence 8999999754 23356677789999999999754 34433444569998
No 165
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.07 E-value=8e-10 Score=108.44 Aligned_cols=101 Identities=23% Similarity=0.291 Sum_probs=68.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.++|||||+++|+...-... .+...|.+... ..+.+. +....+
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~--~~~~~~--------------~~~~~~ 51 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD--------------LAATIGVDFKV--KTLTVD--------------GKKVKL 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--------------cCCcccceEEE--EEEEEC--------------CEEEEE
Confidence 689999999999999999964321110 00111112111 122221 125689
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--------H----hh-----hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--------A----LG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~--------~----~~-----~~~~~ii~iNKiD~~ 151 (831)
.++||||+..|.......++.+|++++|+|+.+ . +. ...|.++|+||+|+.
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 999999999998888888999999999999886 1 11 123346699999987
No 166
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.07 E-value=6.5e-10 Score=109.43 Aligned_cols=100 Identities=24% Similarity=0.312 Sum_probs=67.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
.|+++|+.|+|||||+++++...- ......+ ..| .-...+.+ ++....+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~t--~~~-------------~~~~~~~~--------------~~~~~~l 50 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF--VDDYDPT--IED-------------SYRKQIEI--------------DGEVCLL 50 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--CcccCCc--hhh-------------hEEEEEEE--------------CCEEEEE
Confidence 689999999999999999965321 1100110 000 00011122 1235688
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----h-CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----E-RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~-~~~~ii~iNKiD~~ 151 (831)
.++||||+.+|.......++.+|++++|+|+.. .+. . ..|.++++||+|+.
T Consensus 51 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 51 DILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred EEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999999999999888889999999999999875 111 1 23445699999986
No 167
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.06 E-value=5.7e-10 Score=135.10 Aligned_cols=102 Identities=23% Similarity=0.346 Sum_probs=74.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.++|+|+|++|+|||||+++|+.....+..... |+|.+.......|. +.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~p---------------GvT~d~~~~~~~~~----------------~~ 323 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTP---------------GVTRDRVSYDAEWA----------------GT 323 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCC---------------CeeEEEEEEEEEEC----------------CE
Confidence 589999999999999999999754332222222 44544444444553 67
Q ss_pred eEEEEeCCCCcc--------hHHHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~d--------f~~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
.+++|||||+.. |...+..+++.+|++|+|+|+.. .+.. +.|.++|+||+|+.
T Consensus 324 ~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 324 DFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred EEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 899999999753 56667788999999999999965 2333 34455699999976
No 168
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.06 E-value=6.4e-10 Score=109.86 Aligned_cols=103 Identities=18% Similarity=0.246 Sum_probs=69.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
+.+|+++|..|+|||||+++++...-.... ...++.......+.+. +...
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~~~~ 51 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESY----------------ISTIGVDFKIRTIELD--------------GKTI 51 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEEC--------------CEEE
Confidence 358999999999999999999543211000 0011111111222221 2256
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
.+.++||||+.+|.......++.+|++|+|+|+.+ .+. .+.|.+++.||+|+.
T Consensus 52 ~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 52 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred EEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 88999999999999888888999999999999976 111 123446699999976
No 169
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.06 E-value=6.2e-10 Score=126.79 Aligned_cols=102 Identities=22% Similarity=0.303 Sum_probs=72.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
-.+|+++|++|+|||||+++|+.....+.....| .|.+.....+.+. ++
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pg---------------tTrd~~~~~i~~~----------------g~ 251 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKG---------------TTRDVVEGDFELN----------------GI 251 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC---------------cEEEEEEEEEEEC----------------CE
Confidence 3579999999999999999997655433332233 3444333444553 67
Q ss_pred eEEEEeCCCCcchHHH--------HHHHhhhcCeEEEEEecHH----------Hhh-hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIE----------ALG-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~e--------v~~al~~~D~avlVvda~~----------~~~-~~~~~ii~iNKiD~~ 151 (831)
.++++||||+.++... ....++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 252 ~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 252 LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLK 323 (442)
T ss_pred EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCC
Confidence 8999999998765432 2356788999999999975 111 234556699999987
No 170
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.06 E-value=9.2e-10 Score=109.38 Aligned_cols=96 Identities=21% Similarity=0.163 Sum_probs=67.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..++|||||+++|.... ... +. .|+......+.+ .+..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~~~----------~~-------~T~~~~~~~~~~----------------~~~~i 45 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--FMQ----------PI-------PTIGFNVETVEY----------------KNLKF 45 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--CCC----------cC-------CcCceeEEEEEE----------------CCEEE
Confidence 47899999999999999995421 100 00 011111122333 26799
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---C-CCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---R-IRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~-~~~ii~iNKiD~~ 151 (831)
+++||||+.+|.......++.+|++++|+|+.+ .+.. . .|.+||.||+|+.
T Consensus 46 ~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 46 TIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred EEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 999999999998888888999999999999966 1111 1 3445699999986
No 171
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.06 E-value=6.5e-10 Score=110.09 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=69.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|..++|||||++++.... .... ....++.......+.+. +...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~--f~~~--------------~~~t~~~~~~~~~~~~~--------------~~~~ 52 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS--FNPS--------------FISTIGIDFKIRTIELD--------------GKKI 52 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc--CCcc--------------cccCccceEEEEEEEEC--------------CEEE
Confidence 4689999999999999999995431 1110 00001111111122332 2356
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
.+.++||||+.+|.......++.+|++|+|+|+.+ .+. ...|.+++.||+|+.
T Consensus 53 ~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred EEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 88999999999998888888999999999999875 111 123446699999987
No 172
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.06 E-value=6.2e-10 Score=114.13 Aligned_cols=104 Identities=25% Similarity=0.256 Sum_probs=65.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
..+.+|+|+|+.|+|||||+++|+........ .. +.|+......+.+. +
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~-~~---------------~~t~~~~~~~~~~~---------------~ 87 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED-QL---------------FATLDPTTRRLRLP---------------D 87 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC-cc---------------ceeccceeEEEEec---------------C
Confidence 34679999999999999999999654311111 01 12222222333332 2
Q ss_pred CeeEEEEeCCCCcch-H-------HHHHHHhhhcCeEEEEEecHH------------Hhhh----CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDF-S-------SEVTAALRITDGALVVVDCIE------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df-~-------~ev~~al~~~D~avlVvda~~------------~~~~----~~~~ii~iNKiD~~ 151 (831)
...++++||||+.+. . ..+...++.+|++++|+|+.. .+.. ..|+++|+||+|+.
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 348999999998431 1 122334678999999999975 1111 23556699999987
No 173
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.06 E-value=5.5e-10 Score=111.97 Aligned_cols=101 Identities=24% Similarity=0.303 Sum_probs=68.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
++|+++|+.|+|||||+++++...- .... .. ...... ...+.+. +.++.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~-~~------t~~~~~---------~~~~~~~--------------~~~~~ 50 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESY-YP------TIENTF---------SKIIRYK--------------GQDYH 50 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-cccc-Cc------chhhhE---------EEEEEEC--------------CEEEE
Confidence 6899999999999999999974321 1100 00 000000 0111221 12567
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+.++||||+.+|.......+..+|++++|+|... .+. .+.|.++++||+|+.
T Consensus 51 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 51 LEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 8999999999998888889999999999999886 111 133556799999986
No 174
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.05 E-value=1.4e-09 Score=106.43 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=67.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..|+|||||+++|+...-.... .. .++.......+.+. +....+
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~--~~--------------~~~~~~~~~~~~~~--------------~~~~~~ 51 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH--ES--------------TTQASFFQKTVNIG--------------GKRIDL 51 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc--CC--------------ccceeEEEEEEEEC--------------CEEEEE
Confidence 7999999999999999999654221110 00 00000001111111 124579
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+++||||+..|.......++.+|++++|+|..+ .+. ...|.++++||+|+.
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 52 AIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred EEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999999999988877778889999999999876 111 123445699999987
No 175
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.05 E-value=1.8e-09 Score=107.41 Aligned_cols=100 Identities=18% Similarity=0.270 Sum_probs=69.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|.... ... . ....|+++ ..+.+.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~--~~~----------~---~~t~g~~~----~~i~~~---------------- 56 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASED--ISH----------I---TPTQGFNI----KTVQSD---------------- 56 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCC--Ccc----------c---CCCCCcce----EEEEEC----------------
Confidence 335679999999999999999994321 000 0 00112221 122332
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+..++++||||+..|...+...++.+|++++|+|+.+ .+. ...|.++++||+|+.
T Consensus 57 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 6789999999999998888888999999999999975 111 124445699999987
No 176
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.05 E-value=7.2e-10 Score=109.69 Aligned_cols=96 Identities=20% Similarity=0.256 Sum_probs=67.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeEE
Q 003316 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLIN 101 (831)
Q Consensus 22 I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (831)
|+++|..|+|||||+.++....- ... +.+ |+......+.+ ++..+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~~~----------~~p-------t~g~~~~~i~~----------------~~~~l~ 47 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-LES----------VVP-------TTGFNSVAIPT----------------QDAIME 47 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-ccc----------ccc-------cCCcceEEEee----------------CCeEEE
Confidence 78999999999999999954311 100 000 11111122223 367899
Q ss_pred EEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh--hCCCcEEEEecCcch
Q 003316 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG--ERIRPVLTVNKMDRC 151 (831)
Q Consensus 102 liDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~--~~~~~ii~iNKiD~~ 151 (831)
++||||+.+|.......++.+|++|+|+|+.+ .+. .+.|.++|+||+|+.
T Consensus 48 i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 48 LLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred EEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 99999999999888889999999999999876 111 233445699999987
No 177
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.04 E-value=2.3e-09 Score=104.83 Aligned_cols=102 Identities=25% Similarity=0.256 Sum_probs=65.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
...|+++|+.|+|||||+++|+...-........ .+.......+.. ...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~----------------~~~ 51 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ---------------TTRNRIRGIYTD----------------DDA 51 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCC---------------ceeceEEEEEEc----------------CCe
Confidence 4679999999999999999996432111110000 111111111111 256
Q ss_pred eEEEEeCCCCcchH--------HHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFS--------SEVTAALRITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~--------~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
.+.++||||+.+.. ......++.+|++++|+|+.. .+.. +.|.++++||+|+.
T Consensus 52 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 52 QIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 89999999986532 344566889999999999986 2222 35567799999986
No 178
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.04 E-value=7.5e-10 Score=108.98 Aligned_cols=101 Identities=20% Similarity=0.236 Sum_probs=67.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.++|||||+++|+...-. .. ....++.......+.+. +....+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~-~~---------------~~~t~~~~~~~~~~~~~--------------~~~~~l 51 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV-SK---------------YLPTIGIDYGVKKVSVR--------------NKEVRV 51 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CC---------------CCCccceeEEEEEEEEC--------------CeEEEE
Confidence 6999999999999999999643210 00 00011111111122221 236789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh-hh-------CCCc-EEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL-GE-------RIRP-VLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~-~~-------~~~~-ii~iNKiD~~ 151 (831)
+|+||||+.+|.......++.+|++|+|+|..+ .+ .. ..+| ++++||.|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 52 NFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred EEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 999999999998777788899999999999875 11 11 2344 5599999985
No 179
>PLN03118 Rab family protein; Provisional
Probab=99.04 E-value=8.8e-10 Score=113.78 Aligned_cols=102 Identities=21% Similarity=0.279 Sum_probs=70.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+|+|+.|+|||||+++|+... +.. .. ..++.......+.+. +..+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~--~~~--~~-------------~t~~~~~~~~~~~~~--------------~~~~ 62 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSS--VED--LA-------------PTIGVDFKIKQLTVG--------------GKRL 62 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCC--cC-------------CCceeEEEEEEEEEC--------------CEEE
Confidence 3579999999999999999996532 111 00 011111111222222 2356
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------Hh----h-----hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------AL----G-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~~----~-----~~~~~ii~iNKiD~~ 151 (831)
.++|+||||+.+|.......++.+|++|+|+|+.+ .+ . ...+.++|+||+|+.
T Consensus 63 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 63 KLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred EEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 89999999999999888899999999999999986 11 1 123456799999986
No 180
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.04 E-value=1.6e-09 Score=106.54 Aligned_cols=96 Identities=22% Similarity=0.242 Sum_probs=66.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.++|||||+.++.. +... ++.+. -|..+ ..+.+ ....+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~--~~~~----------~~~pt---~g~~~----~~~~~----------------~~~~~ 46 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL--GEIV----------TTIPT---IGFNV----ETVEY----------------KNISF 46 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCCc----------ccCCC---CCcce----EEEEE----------------CCEEE
Confidence 589999999999999999842 1111 11110 01111 11222 26789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh----CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~----~~~~ii~iNKiD~~ 151 (831)
+++||||+..|.......++.+|++|+|+|+.+ .+.. ..|.++++||+|+.
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 999999999998877788899999999999975 1111 23445699999986
No 181
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.04 E-value=7.3e-10 Score=112.50 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=67.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..|+|||||+.++....-....... .+........+.+. +....+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~---------------t~~~~~~~~~~~~~--------------~~~~~~ 52 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIA---------------TVGIDFRNKVVTVD--------------GVKVKL 52 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCC---------------cccceeEEEEEEEC--------------CEEEEE
Confidence 6899999999999999999543221111000 00111111111221 235689
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+|+||||+.+|.......++.+|++|+|+|+.. .+. ...|.++++||+|+.
T Consensus 53 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 53 QIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred EEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 999999999998888888999999999999975 111 123445699999986
No 182
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.04 E-value=1.3e-09 Score=107.83 Aligned_cols=100 Identities=22% Similarity=0.231 Sum_probs=61.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
|+|+++|+.|+|||||+++|+........ ..+.|.......+.+ ++..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~----------------~~~~ 48 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAP----------------YPFTTKSLFVGHFDY----------------KYLR 48 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCC----------------CCCcccceeEEEEcc----------------CceE
Confidence 68999999999999999999543211100 011222222222222 2679
Q ss_pred EEEEeCCCCcchH--------HHHHHHh-hhcCeEEEEEecHH--------------Hhhh---CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFS--------SEVTAAL-RITDGALVVVDCIE--------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~--------~ev~~al-~~~D~avlVvda~~--------------~~~~---~~~~ii~iNKiD~~ 151 (831)
++|+||||+.+.. .....++ ..+|++|+|+|+.. .+.. ..|.++++||+|+.
T Consensus 49 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 126 (168)
T cd01897 49 WQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL 126 (168)
T ss_pred EEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC
Confidence 9999999985321 1222222 34799999999973 1222 34456699999987
No 183
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.03 E-value=1.2e-09 Score=108.15 Aligned_cols=102 Identities=21% Similarity=0.242 Sum_probs=68.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++|+.++|||||++++... ........ .-|.++... .+.. ++....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~--~~~~~~~~------------t~~~~~~~~--~~~~--------------~~~~~~ 52 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK--KFMADCPH------------TIGVEFGTR--IIEV--------------NGQKIK 52 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCCCCCc------------ccceeEEEE--EEEE--------------CCEEEE
Confidence 57999999999999999999532 11110000 001111111 1122 123568
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------Hhh------hC-CCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------ALG------ER-IRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~~~------~~-~~~ii~iNKiD~~ 151 (831)
+.++||||+..|.......++.+|++|+|+|..+ .+. .. .|.+++.||+|+.
T Consensus 53 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 53 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 8999999999999888889999999999999986 111 12 2345699999986
No 184
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.03 E-value=1.2e-09 Score=107.62 Aligned_cols=100 Identities=20% Similarity=0.308 Sum_probs=67.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..|+|||||+++++. |........+ . +-+. ...+.. ++..+.+
T Consensus 3 ki~~~G~~~~GKTsli~~~~~--~~~~~~~~~t--~----------~~~~---~~~~~~--------------~~~~~~l 51 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQ--GIFVEKYDPT--I----------EDSY---RKQVEV--------------DGQQCML 51 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCcccCCc--c----------hheE---EEEEEE--------------CCEEEEE
Confidence 689999999999999999963 2222110110 0 0000 111222 1235678
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh-h----hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL-G----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~-~----~~~~~ii~iNKiD~~ 151 (831)
+++||||+..|.......++.+|++++|+|... .+ . .+.|.++++||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 52 EILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred EEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 899999999999888889999999999999865 11 1 224456699999986
No 185
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.03 E-value=5.8e-10 Score=113.92 Aligned_cols=100 Identities=14% Similarity=0.195 Sum_probs=67.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.|+|||||+++++... ....... .+.......+.+. +....+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~--~~~~~~~---------------t~~~~~~~~~~~~--------------~~~~~l 49 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT--FEPKYRR---------------TVEEMHRKEYEVG--------------GVSLTL 49 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCccCCC---------------chhhheeEEEEEC--------------CEEEEE
Confidence 48899999999999999996532 1110000 0000111122232 124689
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hh---h-hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------AL---G-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~---~-~~~~~ii~iNKiD~~ 151 (831)
+|+||||+.+|.......++.+|++|+|+|+++ .. . ...|.++++||+|+.
T Consensus 50 ~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 50 DILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred EEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 999999999998777788899999999999976 11 1 234556699999986
No 186
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.03 E-value=9.8e-10 Score=108.90 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=67.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..|+|||||+++++... .... ...|+........+. .++....+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~~~~----------------~~~t~~~~~~~~~~~------------~~~~~~~l 51 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE--FEKK----------------YVATLGVEVHPLDFH------------TNRGKIRF 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCC----------------CCCceeeEEEEEEEE------------ECCEEEEE
Confidence 68999999999999999996432 1110 001211111122221 11235789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh---hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~---~~~~~ii~iNKiD~~ 151 (831)
.++||||+.+|.......++.+|++|+|+|.+. .+. ...|.++|.||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 52 NVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred EEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 999999999988766777889999999999987 111 134445699999986
No 187
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.03 E-value=1.8e-09 Score=110.15 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=69.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
+||+++|++|+|||||+|+|+......... ...+.|.........|. +..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~--------------~~~~~T~~~~~~~~~~~----------------~~~ 50 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKL--------------SASSVTKTCQKESAVWD----------------GRR 50 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccccc--------------CCCCcccccceeeEEEC----------------CeE
Confidence 589999999999999999997654432221 12244555444445553 779
Q ss_pred EEEEeCCCCcchH-------HHHHHHh----hhcCeEEEEEecHH----------HhhhC------CCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFS-------SEVTAAL----RITDGALVVVDCIE----------ALGER------IRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~-------~ev~~al----~~~D~avlVvda~~----------~~~~~------~~~ii~iNKiD~~ 151 (831)
+++|||||..++. .++.+.+ ..+|++|+|+|+.. .+.+. .+.++++|+.|..
T Consensus 51 i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l 129 (196)
T cd01852 51 VNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL 129 (196)
T ss_pred EEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECcccc
Confidence 9999999987752 2333333 45799999999875 22221 3556799999977
No 188
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.03 E-value=6.8e-10 Score=127.19 Aligned_cols=101 Identities=24% Similarity=0.326 Sum_probs=70.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++|++|+|||||+++|+.....+.....| .|.+.....+.+. ++.
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g---------------tT~d~~~~~i~~~----------------g~~ 264 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAG---------------TTRDVIEEHINLD----------------GIP 264 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC---------------cccccEEEEEEEC----------------CeE
Confidence 479999999999999999997544322222223 3433333344443 678
Q ss_pred EEEEeCCCCcchHHH--------HHHHhhhcCeEEEEEecHH--------Hhh--hCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIE--------ALG--ERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~e--------v~~al~~~D~avlVvda~~--------~~~--~~~~~ii~iNKiD~~ 151 (831)
++++||||+.++... +...++.+|++++|+|+.. .+. ...|.++|+||+|+.
T Consensus 265 i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 265 LRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLT 334 (449)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhcc
Confidence 999999999876432 3346788999999999975 222 234556799999987
No 189
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.02 E-value=2.6e-09 Score=104.78 Aligned_cols=100 Identities=21% Similarity=0.308 Sum_probs=68.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..|+|||||+++|+... ..+...++ ..+. . .....+ ++....+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~--~~~~~~~~--~~~~----------~---~~~~~~--------------~~~~~~~ 50 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE--FVEDYEPT--KADS----------Y---RKKVVL--------------DGEDVQL 50 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CccccCCc--chhh----------E---EEEEEE--------------CCEEEEE
Confidence 79999999999999999997432 11110110 0000 0 000111 1235789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
.++||||+.+|.......++.+|++++|+|... .+. ...|+++|+||+|+.
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 51 NILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred EEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence 999999999999999999999999999999764 111 234556799999987
No 190
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.01 E-value=2.5e-09 Score=106.00 Aligned_cols=104 Identities=20% Similarity=0.186 Sum_probs=69.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|..++|||||+++++.. .... +....++.......+.+. +..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~--~~~~--------------~~~~~~~~~~~~~~~~~~--------------~~~ 53 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTN--KFDT--------------QLFHTIGVEFLNKDLEVD--------------GHF 53 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcC--CCCc--------------CcCCceeeEEEEEEEEEC--------------CeE
Confidence 3468999999999999999999532 1111 000111111111122222 235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh-------hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG-------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~-------~~~~~ii~iNKiD~~ 151 (831)
..+.|+||||+..|.......++.+|++|+|+|... .+. .+.|.+++.||+|+.
T Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 54 VTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 678899999999998888888999999999998774 111 123446699999986
No 191
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.01 E-value=1.5e-09 Score=110.94 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=70.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|..|+|||||+++++... .... + ...+........+.+. +..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~--~~~~------~--------~~t~~~~~~~~~~~~~--------------~~~ 54 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT--FSGS------Y--------ITTIGVDFKIRTVEIN--------------GER 54 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCCC------c--------CccccceeEEEEEEEC--------------CEE
Confidence 46789999999999999999995321 1100 0 0001111111222221 234
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh---hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~---~~~~~ii~iNKiD~~ 151 (831)
..++|+||||+..|.......++.+|++|+|+|+.+ .+. ...|.+||+||+|+.
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 678999999999998888888999999999999975 111 123446699999986
No 192
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.01 E-value=2.4e-09 Score=107.74 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=68.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+++|..++|||||+.+|.. +.... +. ..-|.++ ..+.+ .+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~--~~~~~----------~~---pt~g~~~----~~~~~----------------~~ 60 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKL--GEIVT----------TI---PTIGFNV----ETVEY----------------KN 60 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHcc--CCCcc----------cc---CCcceeE----EEEEE----------------CC
Confidence 346899999999999999999842 11111 00 0012221 12333 26
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
..++|+||||+..|.......++.+|++|+|+|+.+ .+. ...|.+|+.||+|+.
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 789999999999998877778899999999999986 111 123445699999987
No 193
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.00 E-value=1e-09 Score=107.02 Aligned_cols=100 Identities=25% Similarity=0.351 Sum_probs=67.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.|+|||||+++|+... ....... ... ......+.+. +..+.+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~---------~~~------~~~~~~~~~~--------------~~~~~~ 49 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDP---------TIE------DSYRKTIVVD--------------GETYTL 49 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCC---------Chh------HeEEEEEEEC--------------CEEEEE
Confidence 58999999999999999996543 1110000 000 0001112221 125789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hh--hh--CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------AL--GE--RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~--~~--~~~~ii~iNKiD~~ 151 (831)
+++||||+.++.......++.+|++++|+|... .. .. ..|.++++||+|+.
T Consensus 50 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 50 DILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred EEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc
Confidence 999999999999888899999999999999865 11 11 33445699999987
No 194
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.00 E-value=2e-09 Score=105.87 Aligned_cols=104 Identities=17% Similarity=0.212 Sum_probs=69.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..++|||||+++|............. ..|..... ..+.+. ++....+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~------------t~~~~~~~--~~~~~~-------------~~~~~~l 54 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLM------------TTGCDFVV--KEVPVD-------------TDNTVEL 54 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCC------------ceEEEEEE--EEEEeC-------------CCCEEEE
Confidence 68999999999999999996532222111000 01111111 111111 1235789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh---CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~---~~~~ii~iNKiD~~ 151 (831)
.++||||+..|...+...++.+|++++|+|..+ .+.. ..|.++++||+|+.
T Consensus 55 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 55 FIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999999998888889999999999999986 1111 24556699999986
No 195
>PTZ00369 Ras-like protein; Provisional
Probab=99.00 E-value=1e-09 Score=111.17 Aligned_cols=101 Identities=20% Similarity=0.234 Sum_probs=68.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-+|+++|+.|+|||||+++++...- ...... .. |.+.. ..+.++ +..+.
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~--~~~~~~---------t~---~~~~~---~~~~~~--------------~~~~~ 54 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHF--IDEYDP---------TI---EDSYR---KQCVID--------------EETCL 54 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CcCcCC---------ch---hhEEE---EEEEEC--------------CEEEE
Confidence 5899999999999999999964321 110000 00 00110 111121 23568
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----h-CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----E-RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~-~~~~ii~iNKiD~~ 151 (831)
++|+||||+.+|.......++.+|++|+|+|+.+ .+. . +.|.+++.||+|+.
T Consensus 55 l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 55 LDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred EEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999888889999999999999875 111 1 23445699999986
No 196
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.00 E-value=2.1e-09 Score=105.11 Aligned_cols=100 Identities=22% Similarity=0.310 Sum_probs=67.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..|+|||||+++++... .......+ . +.+. ...+.+. +..+.+
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~--~~~~~~~t--~----------~~~~---~~~~~~~--------------~~~~~~ 51 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH--FVDEYDPT--I----------EDSY---RKQVVID--------------GETCLL 51 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CcCCcCCc--c----------hheE---EEEEEEC--------------CEEEEE
Confidence 68999999999999999996432 11100110 0 0000 0111221 124678
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+++||||+.+|.......++.+|++++|+|..+ ... ...|.+++.||+|+.
T Consensus 52 ~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 52 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred EEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 899999999999888889999999999999875 111 133556699999987
No 197
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.00 E-value=3e-09 Score=106.45 Aligned_cols=98 Identities=21% Similarity=0.153 Sum_probs=68.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|..++|||||+.++.. |... ++. -|+......+.+ ...
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~--~~~~----------~~~-------~t~~~~~~~~~~----------------~~~ 57 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL--GESV----------TTI-------PTIGFNVETVTY----------------KNI 57 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCCC----------CcC-------CccccceEEEEE----------------CCE
Confidence 36799999999999999999942 1110 100 011111112233 267
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh----CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~----~~~~ii~iNKiD~~ 151 (831)
.+.++||||+..|.......++.+|++|+|+|+++ .+.. ..|.+||.||.|+.
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 89999999999998877788899999999999975 1111 23445699999987
No 198
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.99 E-value=1.1e-09 Score=105.17 Aligned_cols=87 Identities=23% Similarity=0.257 Sum_probs=59.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.|+|||||+++|.... . ...-| ..+.|. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~-----------~---------~~~~t-----~~~~~~----------------~--- 37 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE-----------I---------LYKKT-----QAVEYN----------------D--- 37 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc-----------c---------ccccc-----eeEEEc----------------C---
Confidence 79999999999999999993221 0 00011 123332 2
Q ss_pred EEEeCCCCc----chHHHHHHHhhhcCeEEEEEecHH-------Hh-hh-CCCcEEEEecCcch
Q 003316 101 NLIDSPGHV----DFSSEVTAALRITDGALVVVDCIE-------AL-GE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~----df~~ev~~al~~~D~avlVvda~~-------~~-~~-~~~~ii~iNKiD~~ 151 (831)
.+|||||.. .+...+..+++.+|++|+|+|+.+ .+ .. ..|.++++||+|+.
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLA 101 (142)
T ss_pred eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccC
Confidence 689999973 344445567899999999999986 11 11 23556699999986
No 199
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.99 E-value=2e-09 Score=105.43 Aligned_cols=96 Identities=27% Similarity=0.258 Sum_probs=66.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeEE
Q 003316 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLIN 101 (831)
Q Consensus 22 I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (831)
|+++|..|+|||||++++....- .. ..+ ..|.++ ..+.+. ..+.++
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~--~~----------~~~---t~~~~~----~~~~~~---------------~~~~l~ 47 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAEL--VT----------TIP---TVGFNV----EMLQLE---------------KHLSLT 47 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc--cc----------ccC---ccCcce----EEEEeC---------------CceEEE
Confidence 78999999999999999954321 00 000 011111 112221 357899
Q ss_pred EEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 102 liDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
++||||+..|.......++.+|++|+|+|+.+ .+. .+.|.++|+||+|+.
T Consensus 48 i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 48 VWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred EEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 99999999998877788999999999999876 111 233446699999986
No 200
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.98 E-value=1.2e-09 Score=107.94 Aligned_cols=100 Identities=19% Similarity=0.320 Sum_probs=65.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..|+|||||+++++.. ..... +..... +... ..+.+ ++....+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~--~~~~~------~~~t~~-------~~~~--~~~~~--------------~~~~~~~ 49 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTK--RFIGE------YDPNLE-------SLYS--RQVTI--------------DGEQVSL 49 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhC--ccccc------cCCChH-------Hhce--EEEEE--------------CCEEEEE
Confidence 4899999999999999999642 11110 000000 0111 11111 1235678
Q ss_pred EEEeCCCCcc-hHHHHHHHhhhcCeEEEEEecHH------------Hhh-----h-CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVD-FSSEVTAALRITDGALVVVDCIE------------ALG-----E-RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~d-f~~ev~~al~~~D~avlVvda~~------------~~~-----~-~~~~ii~iNKiD~~ 151 (831)
+++||||+.. +.......++.+|++|+|+|+.+ .+. . ..|.++|.||+|+.
T Consensus 50 ~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 50 EILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred EEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 9999999985 45667888999999999999976 111 1 34456699999976
No 201
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.98 E-value=4.9e-09 Score=107.36 Aligned_cols=102 Identities=23% Similarity=0.274 Sum_probs=68.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..++|||||+++|+... .... ....+........+.+. .+....+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~--~~~~--------------~~~t~~~d~~~~~v~~~-------------~~~~~~l 52 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI--FSQH--------------YKATIGVDFALKVIEWD-------------PNTVVRL 52 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCC--------------CCCceeEEEEEEEEEEC-------------CCCEEEE
Confidence 68999999999999999996431 1110 00001111111112221 1246789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh--------hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG--------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~--------~~~~~ii~iNKiD~~ 151 (831)
.|+||||+..|.......++.+|++|+|+|... .+. ...|.++|.||+|+.
T Consensus 53 ~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 53 QLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred EEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 999999999998888888999999999999885 111 123446699999986
No 202
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.98 E-value=1.7e-09 Score=106.92 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=68.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-+|+++|..|+|||||+++|+... .... + .+ .-|++.. ...+.. .+....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~--~~~~------~---~~---t~~~~~~--~~~~~~--------------~~~~~~ 51 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS--FTSA------F---VS---TVGIDFK--VKTVFR--------------NDKRVK 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCC------C---CC---ceeeEEE--EEEEEE--------------CCEEEE
Confidence 379999999999999999995422 1110 0 00 0011111 111111 112468
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh---CCCc-EEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE---RIRP-VLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~---~~~~-ii~iNKiD~~ 151 (831)
+.++||||+.+|.......++.+|++++|+|..+ .+.. ..+| ++++||+|+.
T Consensus 52 ~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 52 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred EEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 9999999999999888889999999999999876 1211 2344 5699999986
No 203
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.97 E-value=2.3e-09 Score=105.62 Aligned_cols=103 Identities=21% Similarity=0.235 Sum_probs=68.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|..++|||||+++|+...-.... ...++.......+.+. +...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~~~~ 52 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS----------------KSTIGVEFATRSIQID--------------GKTI 52 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC----------------CCccceEEEEEEEEEC--------------CEEE
Confidence 358999999999999999999533211000 0111111112222222 1246
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh---CCCc-EEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE---RIRP-VLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~---~~~~-ii~iNKiD~~ 151 (831)
.++++||||+..|.......++.+|++|+|+|+.+ .+.+ ..+| ++++||.|+.
T Consensus 53 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 53 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred EEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 78999999999998888888899999999999975 1111 2245 4599999986
No 204
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.97 E-value=1.8e-09 Score=104.22 Aligned_cols=98 Identities=24% Similarity=0.240 Sum_probs=66.1
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeEEEE
Q 003316 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLI 103 (831)
Q Consensus 24 ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inli 103 (831)
|+|+.|+|||||+++|......... ..++.|.......+.+. ....++++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS---------------PVPGTTTDPVEYVWELG---------------PLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC---------------CCCCcEECCeEEEEEec---------------CCCcEEEE
Confidence 5899999999999999654322111 11223333333333332 25689999
Q ss_pred eCCCCcchH-------HHHHHHhhhcCeEEEEEecHH------H--h----hhCCCcEEEEecCcch
Q 003316 104 DSPGHVDFS-------SEVTAALRITDGALVVVDCIE------A--L----GERIRPVLTVNKMDRC 151 (831)
Q Consensus 104 DTPGh~df~-------~ev~~al~~~D~avlVvda~~------~--~----~~~~~~ii~iNKiD~~ 151 (831)
||||+.++. ......++.+|++++|+|+.. . . ..+.|.++++||+|+.
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 117 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLL 117 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccC
Confidence 999988764 345568899999999999998 1 1 1234556799999987
No 205
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.96 E-value=2.4e-09 Score=109.64 Aligned_cols=101 Identities=20% Similarity=0.318 Sum_probs=68.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
.|+++|..|+|||||+.++... .... +..-.+++......+.+. +....+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~--~f~~--------------~~~~Ti~~~~~~~~i~~~--------------~~~v~l 51 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDD--TFCE--------------ACKSGVGVDFKIKTVELR--------------GKKIRL 51 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhC--CCCC--------------cCCCcceeEEEEEEEEEC--------------CEEEEE
Confidence 5889999999999999999542 1111 000011111111122332 235789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+|+||+|+..|.......++.+|++|+|+|.++ .+. ...|.++|.||+|+.
T Consensus 52 ~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 52 QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred EEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 999999999999888889999999999999987 111 123445599999986
No 206
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.96 E-value=3.9e-09 Score=110.00 Aligned_cols=94 Identities=21% Similarity=0.333 Sum_probs=66.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheec-eeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERG-ITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rg-iTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
-+.|+++|+.|+|||||+++|+....... . ....| +|+ +. .++
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~--------~------~~~~g~i~i--------~~--------------~~~ 82 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQN--------I------SDIKGPITV--------VT--------------GKK 82 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCc--------c------ccccccEEE--------Ee--------------cCC
Confidence 47899999999999999999975421100 0 01122 111 11 136
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEE-EEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVL-TVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii-~iNKiD~~ 151 (831)
.+++++||||+. .++..+++.+|.+++|+|+.. .+. .+.|.++ |+||+|+.
T Consensus 83 ~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 83 RRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred ceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 789999999975 677788899999999999975 222 3445455 99999986
No 207
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.96 E-value=2.8e-09 Score=104.59 Aligned_cols=101 Identities=20% Similarity=0.291 Sum_probs=66.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++|..|+|||||+++++... .......+ ..+ .. ...+... +....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~~~~t--~~~----------~~---~~~~~~~--------------~~~~~ 50 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEKYDPT--IED----------SY---RKQIEVD--------------GQQCM 50 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCc--hhh----------hE---EEEEEEC--------------CEEEE
Confidence 379999999999999999996432 11110110 000 00 0111121 23567
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
+.|+||||+.+|.......++.+|++++|+|..+ .+. ...|.++++||+|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 51 LEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred EEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 8899999999998777778899999999999875 111 123445699999986
No 208
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.96 E-value=2.3e-09 Score=118.73 Aligned_cols=102 Identities=28% Similarity=0.355 Sum_probs=66.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
....|+++|++|+|||||+++|+... .+.....+ .|.+.....+.++ ++
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~---------------tT~d~~~~~i~~~---------------~~ 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLF---------------ATLDPTTRRLDLP---------------DG 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCc---------------cccCCEEEEEEeC---------------CC
Confidence 45679999999999999999996543 22111122 2333322333442 25
Q ss_pred eeEEEEeCCCCc-c--------hHHHHHHHhhhcCeEEEEEecHH------------Hhhh----CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHV-D--------FSSEVTAALRITDGALVVVDCIE------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~-d--------f~~ev~~al~~~D~avlVvda~~------------~~~~----~~~~ii~iNKiD~~ 151 (831)
..+.|+||||.. + |. .+...++.||++|+|+|+.. .+.+ ..|.++|+||+|+.
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~-~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFR-ATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHH-HHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 689999999972 2 22 23345788999999999975 1111 34446699999986
No 209
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.95 E-value=3.1e-09 Score=105.33 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=67.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeee-ceeEEEEeechhhhhccccccCCCCee
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKS-TGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
+|+++|..|+|||||++++.... ....... |+.. -...+.+. +....
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~~--------------~~~~~ 50 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV--FIESYDP----------------TIEDSYRKQVEID--------------GRQCD 50 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCcccCC----------------cchheEEEEEEEC--------------CEEEE
Confidence 58999999999999999995332 1110000 0100 01122221 23568
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh----hh-CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL----GE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~----~~-~~~~ii~iNKiD~~ 151 (831)
+.++||||+.+|.......++.+|++|+|+|..+ .+ .. +.|.++++||+|+.
T Consensus 51 ~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 51 LEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred EEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 8999999999999999999999999999999765 11 11 23445699999986
No 210
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.95 E-value=3.3e-09 Score=105.59 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=67.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeece--eEEEEeechhhhhccccccCCCCe
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
+|+++|..++|||||+++++... .... . .-|+.... ..+.. ++...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~--f~~~--------------~--~~t~~~~~~~~~~~~--------------~~~~~ 49 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV--FDKN--------------Y--KATIGVDFEMERFEI--------------LGVPF 49 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCC--------------C--CCceeeEEEEEEEEE--------------CCEEE
Confidence 58999999999999999996431 1110 0 01111111 11222 12356
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------H-hhhC---CCc-EEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------A-LGER---IRP-VLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~-~~~~---~~~-ii~iNKiD~~ 151 (831)
.++|+||||..+|.......++.+|++|+|+|+.+ . +... .+| ++|.||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 50 SLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred EEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 89999999999998888888999999999999976 1 1222 244 4699999985
No 211
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.95 E-value=6.1e-09 Score=104.92 Aligned_cols=97 Identities=22% Similarity=0.250 Sum_probs=67.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++|..++|||||+.++.. +.... +.+ ..|..+ ..+.+ .+..
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~--~~~~~----------~~~---T~~~~~----~~~~~----------------~~~~ 62 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKL--GEVVT----------TIP---TIGFNV----ETVEY----------------KNLK 62 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc--CCccc----------cCC---ccccce----EEEEE----------------CCEE
Confidence 5799999999999999999832 11110 000 011111 12222 2678
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCc-EEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRP-VLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~-ii~iNKiD~~ 151 (831)
++++||||+..|.......++.+|++|+|+|+.+ .+.. ..+| +|++||.|+.
T Consensus 63 ~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 63 FTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 9999999999998888888999999999999965 1111 1344 5599999987
No 212
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.95 E-value=1.3e-09 Score=108.43 Aligned_cols=100 Identities=22% Similarity=0.307 Sum_probs=66.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.++|||||+.+++... ....... +..+ .. ...+.+ ++..+.+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~--~~~~~~~--t~~~-----------~~--~~~~~~--------------~~~~~~~ 50 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDA--FPEEYVP--TVFD-----------HY--AVSVTV--------------GGKQYLL 50 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCCCCC--ceee-----------ee--EEEEEE--------------CCEEEEE
Confidence 68999999999999999996532 1110011 0000 00 011112 1235678
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh---hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~---~~~~~ii~iNKiD~~ 151 (831)
+++||||+.+|.......++.+|++|+|+|..+ .+. .+.|.++++||+|+.
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 51 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred EEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhh
Confidence 999999999998776777889999999999866 111 234556699999986
No 213
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.94 E-value=2.9e-09 Score=117.58 Aligned_cols=101 Identities=24% Similarity=0.342 Sum_probs=77.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-+++|+|.+|+|||||+|+|+....+|....+|+ |.+.-...+.. +++.
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GT---------------TRDviee~i~i----------------~G~p 266 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGT---------------TRDVIEEDINL----------------NGIP 266 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCC---------------ccceEEEEEEE----------------CCEE
Confidence 4799999999999999999999998888777774 33333344444 3899
Q ss_pred EEEEeCCCCc---chHH-----HHHHHhhhcCeEEEEEecHH----------H-hhhCCCcEEEEecCcch
Q 003316 100 INLIDSPGHV---DFSS-----EVTAALRITDGALVVVDCIE----------A-LGERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~---df~~-----ev~~al~~~D~avlVvda~~----------~-~~~~~~~ii~iNKiD~~ 151 (831)
+.|+||.|.. |... -...++..||.+++|+|+.. . +..+.|.++|+||.|+.
T Consensus 267 v~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~ 337 (454)
T COG0486 267 VRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLV 337 (454)
T ss_pred EEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcc
Confidence 9999999965 3432 24456789999999999997 1 23334556799999998
No 214
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.93 E-value=4.3e-09 Score=105.36 Aligned_cols=114 Identities=19% Similarity=0.214 Sum_probs=70.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|..++|||||++++.... ....... .++.......+.+....+. .....+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~--~~~~~~~--------------t~~~~~~~~~~~~~~~~~~----~~~~~~~~ 62 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNK--FNPKFIT--------------TVGIDFREKRVVYNSSGPG----GTLGRGQR 62 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCccCCC--------------ccceEEEEEEEEEcCcccc----ccccCCCE
Confidence 34689999999999999999995421 1110000 0111111111222100000 00011235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh----CCCc-EEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE----RIRP-VLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~----~~~~-ii~iNKiD~~ 151 (831)
..+.|+||||+..|.......++.+|++|+|+|+.+ .+.. ..+| ++|.||+|+.
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 789999999999998888889999999999999886 1111 2345 5599999986
No 215
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.93 E-value=1.9e-09 Score=106.69 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=66.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.|+|||||+++|+...-. ... .. + ........+.+ .+..+.+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~-~~~-~~--~-------------~~~~~~~~~~~--------------~~~~~~l 50 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP-TEY-VP--T-------------VFDNYSATVTV--------------DGKQVNL 50 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCC-CC--c-------------eeeeeEEEEEE--------------CCEEEEE
Confidence 6899999999999999999654210 000 00 0 00001111111 1236689
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh---hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~---~~~~~ii~iNKiD~~ 151 (831)
.++||||+.+|.......++.+|++++|+|+.+ .+. ...|.++++||+|+.
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 117 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLR 117 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhh
Confidence 999999999887666666789999999999875 111 124456699999987
No 216
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.93 E-value=4e-09 Score=104.25 Aligned_cols=100 Identities=19% Similarity=0.210 Sum_probs=66.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
.|+++|..|+|||||+++++... .... +..... .+. . ..+.+. .+...+
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~--f~~~------~~~t~~------~~~-~--~~~~~~--------------~~~~~l 51 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGT--FRES------YIPTIE------DTY-R--QVISCS--------------KNICTL 51 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCC------cCCcch------heE-E--EEEEEC--------------CEEEEE
Confidence 58999999999999999996432 1110 000000 000 0 011111 135689
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh-------CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE-------RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~-------~~~~ii~iNKiD~~ 151 (831)
+++||||+.+|......+++.+|++|+|+|... .+.+ ..|.++|.||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 999999999998877888899999999999875 1111 23445699999986
No 217
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.93 E-value=2.6e-09 Score=109.08 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=63.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+|+|..|+|||||+++++... .... +.+ .++.......+.+. +..+.+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~--f~~~---------~~p-----t~~~~~~~~~i~~~--------------~~~~~l 51 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE--FPEE---------YIP-----TEHRRLYRPAVVLS--------------GRVYDL 51 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC--CCcc---------cCC-----ccccccceeEEEEC--------------CEEEEE
Confidence 68999999999999999995422 1110 000 00000001112232 234788
Q ss_pred EEEeCCCCcchH----HH----HHHHhhhcCeEEEEEecHH--------H----hh-------hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFS----SE----VTAALRITDGALVVVDCIE--------A----LG-------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~----~e----v~~al~~~D~avlVvda~~--------~----~~-------~~~~~ii~iNKiD~~ 151 (831)
+|+||||+.+|. .+ ...+++.+|++|+|+|+.+ . +. ...|.++|.||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 52 HILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred EEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 999999987652 11 4456889999999999986 0 11 123446699999986
No 218
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.92 E-value=4.6e-09 Score=108.79 Aligned_cols=102 Identities=14% Similarity=0.112 Sum_probs=67.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..++|||||+++|+... ... +...-++.+.....+.+. +.....+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~--~~~--------------~~~~T~~~d~~~~~i~~~-------------~~~~~~~ 52 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG--FGK--------------SYKQTIGLDFFSKRVTLP-------------GNLNVTL 52 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CCC--------------CCCCceeEEEEEEEEEeC-------------CCCEEEE
Confidence 58999999999999999995421 110 000111111111122221 1135789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh------CCCcE-EEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE------RIRPV-LTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~------~~~~i-i~iNKiD~~ 151 (831)
+|+||||+..|..-....++.+|++|+|+|+.. .+.+ ..+|+ +|.||+|+.
T Consensus 53 ~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 53 QVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 999999999988888888899999999999886 1111 12444 599999986
No 219
>PRK04213 GTP-binding protein; Provisional
Probab=98.92 E-value=7.5e-09 Score=105.83 Aligned_cols=100 Identities=26% Similarity=0.291 Sum_probs=63.5
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
+....+|+++|+.|+|||||+++|....- ..+...|.|.... .+.+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~----------------~~~~~~~~t~~~~--~~~~---------------- 51 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKV----------------RVGKRPGVTRKPN--HYDW---------------- 51 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCceeeCce--EEee----------------
Confidence 34456899999999999999999943210 0112235555432 2222
Q ss_pred CCeeEEEEeCCCCcc-----------hHHHH----HHHhhhcCeEEEEEecHH----------------------Hhh-h
Q 003316 96 NEYLINLIDSPGHVD-----------FSSEV----TAALRITDGALVVVDCIE----------------------ALG-E 137 (831)
Q Consensus 96 ~~~~inliDTPGh~d-----------f~~ev----~~al~~~D~avlVvda~~----------------------~~~-~ 137 (831)
. .++++||||+.+ |...+ ..++..+|++++|+|+.. .+. .
T Consensus 52 -~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (201)
T PRK04213 52 -G-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL 129 (201)
T ss_pred -c-ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc
Confidence 1 589999999632 22221 224456789999999953 111 2
Q ss_pred CCCcEEEEecCcch
Q 003316 138 RIRPVLTVNKMDRC 151 (831)
Q Consensus 138 ~~~~ii~iNKiD~~ 151 (831)
+.|+++|+||+|+.
T Consensus 130 ~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 130 GIPPIVAVNKMDKI 143 (201)
T ss_pred CCCeEEEEECcccc
Confidence 45667799999986
No 220
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.91 E-value=7.2e-09 Score=104.58 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=66.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeecee-EEEEeechhhhhccccccCCCCee
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
+|+++|..++|||||+++|+... ....... |+..... .+... ++....
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~--~~~~~~~----------------t~~~~~~~~i~~~-------------~~~~~~ 50 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGK--FPEEYVP----------------TVFENYVTNIQGP-------------NGKIIE 50 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc--CCCCCCC----------------eeeeeeEEEEEec-------------CCcEEE
Confidence 79999999999999999996432 1110000 1111110 11111 123567
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------H---h----h---hCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------A---L----G---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------~---~----~---~~~~~ii~iNKiD~~ 151 (831)
+.|+||||+.+|.......++.+|++|+|+|+.+ . + . ...|.+++.||.|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 51 LALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred EEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 8999999999998776677889999999999976 1 1 1 134556699999986
No 221
>PLN03110 Rab GTPase; Provisional
Probab=98.91 E-value=5.3e-09 Score=108.39 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=71.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
+...+|+++|+.++|||||+++|+...-... ....+.+......+.+. +.
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~----------------~~~t~g~~~~~~~v~~~--------------~~ 59 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLE----------------SKSTIGVEFATRTLQVE--------------GK 59 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCCceeEEEEEEEEEEC--------------CE
Confidence 3467999999999999999999954321110 00111111111222221 23
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
...++|+||||+..|.......++.+|++|+|+|..+ .+. .+.|.+++.||+|+.
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 5689999999999999888889999999999999875 111 123446699999975
No 222
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.91 E-value=4.2e-09 Score=109.42 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=69.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|..|+|||||+.+++... .... + +..-|.++. ...+... +..
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~--f~~~------~------~~tig~~~~--~~~~~~~--------------~~~ 61 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK------Y------EPTIGVEVH--PLDFFTN--------------CGK 61 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCC--CCCc------c------CCccceeEE--EEEEEEC--------------CeE
Confidence 34689999999999999999985421 1110 0 000111221 1122221 235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh---hhCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL---GERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~---~~~~~~ii~iNKiD~~ 151 (831)
..++|+||||+.+|..-....++.+|++|+|+|.+. .+ ..+.|.++|.||+|+.
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 789999999999998666667899999999999887 11 1234556699999986
No 223
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.90 E-value=8e-09 Score=104.68 Aligned_cols=105 Identities=16% Similarity=0.263 Sum_probs=70.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
+...+|+++|..++|||||+.++... .... +....++......++... +.
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~--~~~~--------------~~~~t~~~~~~~~~i~~~--------------~~ 53 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDG--STES--------------PYGYNMGIDYKTTTILLD--------------GR 53 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC--CCCC--------------CCCCcceeEEEEEEEEEC--------------CE
Confidence 34678999999999999999998542 1111 000011111111222221 23
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh---hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~---~~~~~ii~iNKiD~~ 151 (831)
...++|+||||+.+|........+.+|++|||+|.+. .+. ...|.+|+.||+|+.
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 5789999999999999887788899999999999986 111 123446699999986
No 224
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.90 E-value=5.1e-09 Score=106.20 Aligned_cols=100 Identities=16% Similarity=0.307 Sum_probs=66.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..|+|||||+++|+... .......+ ..+ .. ...+.+. +....+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~~~~~t--~~~----------~~---~~~~~~~--------------~~~~~l 49 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVETYDPT--IED----------SY---RKQVVVD--------------GQPCML 49 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCccCCCc--hHh----------hE---EEEEEEC--------------CEEEEE
Confidence 38899999999999999996422 21110110 000 00 0011111 124578
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-------hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-------~~~~~ii~iNKiD~~ 151 (831)
+|+||||+.+|.......++.+|++|+|+|... .+. .+.|.+++.||+|+.
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 50 EVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred EEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 999999999999888889999999999999865 111 123445699999986
No 225
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.90 E-value=1e-08 Score=115.00 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=68.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
+-.|+|+|.+|+|||||+++|....-.+.. .. +.|.......+.+. ...
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~-~p---------------~TT~~p~~Giv~~~---------------~~~ 207 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVAD-YP---------------FTTLVPNLGVVRVD---------------DER 207 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccC-CC---------------CCccCcEEEEEEeC---------------CCc
Confidence 457999999999999999999643321111 11 22333333334443 234
Q ss_pred eEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecH---H------------Hhhh------CCCcEEEEecCcc
Q 003316 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCI---E------------ALGE------RIRPVLTVNKMDR 150 (831)
Q Consensus 99 ~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~---~------------~~~~------~~~~ii~iNKiD~ 150 (831)
.|.|+||||... +...+.+.+..+|++++|||+. . .+.. ..|.++|+||+|+
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl 287 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL 287 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence 699999999754 4556778899999999999987 1 1111 2455679999998
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 288 ~ 288 (390)
T PRK12298 288 L 288 (390)
T ss_pred C
Confidence 6
No 226
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=3.8e-10 Score=121.62 Aligned_cols=119 Identities=34% Similarity=0.458 Sum_probs=91.3
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccC------------Cc---eEEecCchhhheeceeeeeceeEEE
Q 003316 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVA------------GD---VRMTDTRQDEAERGITIKSTGISLY 78 (831)
Q Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~------------g~---~~~~D~~~~e~~rgiTi~~~~~~~~ 78 (831)
+...-.+||+++||+|+||||++- +..|.++++.. |+ .+.+|...-|++||++|......+.
T Consensus 2 ~~~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~ 78 (391)
T KOG0052|consen 2 GKEKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 78 (391)
T ss_pred CCcccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccc
Confidence 334556899999999999999987 66677765421 21 4789999999999998765544333
Q ss_pred EeechhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH----------------H-h--hhCC
Q 003316 79 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------------A-L--GERI 139 (831)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~----------------~-~--~~~~ 139 (831)
...+-+++||.|||.||...+..+..++|+|+++|.+.. + + ..+.
T Consensus 79 ----------------t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv 142 (391)
T KOG0052|consen 79 ----------------TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 142 (391)
T ss_pred ----------------ceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccc
Confidence 247889999999999999999999999999999999822 1 1 2234
Q ss_pred Cc-EEEEecCcch
Q 003316 140 RP-VLTVNKMDRC 151 (831)
Q Consensus 140 ~~-ii~iNKiD~~ 151 (831)
.+ ++-+||||-.
T Consensus 143 ~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 143 KQLIVGVNKMDST 155 (391)
T ss_pred eeeeEEeeccccc
Confidence 44 5699999965
No 227
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.89 E-value=6e-09 Score=108.02 Aligned_cols=96 Identities=18% Similarity=0.211 Sum_probs=67.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..++|||||+++++... ... . .-|+........+. .+.+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~--f~~----------~-------~~Tig~~~~~~~~~----------------~~~l 46 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERR--FKD----------T-------VSTVGGAFYLKQWG----------------PYNI 46 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCC----------C-------CCccceEEEEEEee----------------EEEE
Confidence 68999999999999999995422 110 0 00111111112222 5789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+|+||||+..|.......++.+|++|+|+|.++ .+. ...|.|||.||+|+.
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999999999998877788899999999999887 111 123445699999986
No 228
>PRK11058 GTPase HflX; Provisional
Probab=98.89 E-value=4.2e-09 Score=119.37 Aligned_cols=101 Identities=25% Similarity=0.255 Sum_probs=66.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
+..|+|+|.+|+|||||+++|....-.+. ... +.|++.....+.+. +..
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~-~~~---------------~tTld~~~~~i~l~---------------~~~ 245 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAA-DQL---------------FATLDPTLRRIDVA---------------DVG 245 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeec-cCC---------------CCCcCCceEEEEeC---------------CCC
Confidence 45799999999999999999954321111 111 23343333344443 234
Q ss_pred eEEEEeCCCCcc---------hHHHHHHHhhhcCeEEEEEecHH-----H-------hh---h-CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIE-----A-------LG---E-RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~d---------f~~ev~~al~~~D~avlVvda~~-----~-------~~---~-~~~~ii~iNKiD~~ 151 (831)
.+.|+||||... |. .+...++.+|++|+|+|+.+ . +. . ..|+++|+||+|+.
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~-~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFK-ATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHH-HHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 789999999843 32 23455688999999999976 1 11 1 34556699999986
No 229
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.88 E-value=9e-09 Score=104.47 Aligned_cols=102 Identities=15% Similarity=0.190 Sum_probs=66.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.++|||||+++|+...-..... .. ..|.+.... .+.. ++....+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~-~~------------t~~~~~~~~--~~~~--------------~~~~~~l 52 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPY-QN------------TIGAAFVAK--RMVV--------------GERVVTL 52 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCc-cc------------ceeeEEEEE--EEEE--------------CCEEEEE
Confidence 69999999999999999996432111000 00 001111111 1222 1235678
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh---CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~---~~~~ii~iNKiD~~ 151 (831)
+++||||..+|.......++.+|++|+|+|.++ .+.. ..|.++|+||+|+.
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 53 GIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred EEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 899999998887766677889999999999975 1111 23445699999975
No 230
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.87 E-value=3.9e-09 Score=98.15 Aligned_cols=101 Identities=24% Similarity=0.275 Sum_probs=63.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
.|.|+|+.|+|||||+++|+...... ....+...+.++........ .....+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 52 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPD------------NSVPEETSEITIGVDVIVVD----------------GDRQSL 52 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEET----------------TEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcc------------cccccccCCCcEEEEEEEec----------------CCceEE
Confidence 48899999999999999997654320 00001111122221111111 124458
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------------Hhh---hCCCcEEEEecCc
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------------ALG---ERIRPVLTVNKMD 149 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~---------------~~~---~~~~~ii~iNKiD 149 (831)
.++|++|...|.......+..+|++|+|+|..+ .+. ...|.+++.||.|
T Consensus 53 ~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 53 QFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999888776667999999999999987 111 1234456999998
No 231
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.87 E-value=8.3e-09 Score=101.50 Aligned_cols=100 Identities=20% Similarity=0.300 Sum_probs=66.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..|+|||||+.+++. +........+ ... .. ...+... +....+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~--~~~~~~~~~t---------~~~----~~--~~~~~~~--------------~~~~~l 51 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVS--GTFIEKYDPT---------IED----FY--RKEIEVD--------------SSPSVL 51 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCCCCCCc---------hhh----eE--EEEEEEC--------------CEEEEE
Confidence 699999999999999999854 2222110110 000 00 0111111 224578
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
.|+||||+..|..-....++.+|++|+|+|.++ .+. .+.|.+++.||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 52 EILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred EEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 899999999998877778899999999999876 111 124445699999986
No 232
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.87 E-value=9.3e-09 Score=103.99 Aligned_cols=101 Identities=23% Similarity=0.359 Sum_probs=67.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..++|||||+++++... .... + ...-|.+... ..+... +....+
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~--~~~~---------~---~~t~~~~~~~--~~~~~~--------------~~~~~~ 51 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE--FSES---------T---KSTIGVDFKI--KTVYIE--------------NKIIKL 51 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCC---------C---CCceeeEEEE--EEEEEC--------------CEEEEE
Confidence 68999999999999999995321 1100 0 0001111111 122221 235678
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh---h-CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG---E-RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~---~-~~~~ii~iNKiD~~ 151 (831)
.++||||+.+|.......++.+|++|+|+|+.+ .+. . ..|.+++.||.|+.
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 999999999999888899999999999999976 111 1 23345699999976
No 233
>PLN03108 Rab family protein; Provisional
Probab=98.86 E-value=2.7e-08 Score=102.62 Aligned_cols=104 Identities=19% Similarity=0.190 Sum_probs=69.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+|+|+.++|||||+++|+...-.... .+ .-|.+.... .+.+. +..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~-----------~~---ti~~~~~~~--~i~~~--------------~~~ 54 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------DL---TIGVEFGAR--MITID--------------NKP 54 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------CC---CccceEEEE--EEEEC--------------CEE
Confidence 3568999999999999999999543211100 00 001111111 12221 234
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh---hCCCc-EEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG---ERIRP-VLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~---~~~~~-ii~iNKiD~~ 151 (831)
..++++||||+.+|.......++.+|++|+|+|++. .+. ....| +++.||+|+.
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 678999999999998888888899999999999986 111 12344 5699999986
No 234
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.86 E-value=1.2e-08 Score=102.12 Aligned_cols=100 Identities=24% Similarity=0.297 Sum_probs=70.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
++..+|.++|..|||||||+++|.. +.+... . -|+......+.+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~~~-------------~----pT~g~~~~~i~~~---------------- 56 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEISET-------------I----PTIGFNIEEIKYK---------------- 56 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEEEE-------------E----EESSEEEEEEEET----------------
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--cccccc-------------C----cccccccceeeeC----------------
Confidence 5667899999999999999999932 222110 0 1111222334443
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh---hCCCc-EEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG---ERIRP-VLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~---~~~~~-ii~iNKiD~~ 151 (831)
++.++++|.+|+..|..-...-++.+|++|+|||+.+ .+. ....| +|++||.|++
T Consensus 57 ~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 57 GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred cEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccccc
Confidence 7899999999998887666677789999999999997 111 12345 4599999998
No 235
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.85 E-value=7.3e-09 Score=98.69 Aligned_cols=98 Identities=26% Similarity=0.289 Sum_probs=66.4
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeEEEE
Q 003316 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLI 103 (831)
Q Consensus 24 ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inli 103 (831)
++|+.|+|||||+++|......... +..|. .......+. .......++++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~-----------------~~~t~-~~~~~~~~~------------~~~~~~~~~l~ 50 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE-----------------YETTI-IDFYSKTIE------------VDGKKVKLQIW 50 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc-----------------cccch-hheeeEEEE------------ECCEEEEEEEE
Confidence 5899999999999999655431110 01111 111111111 01125689999
Q ss_pred eCCCCcchHHHHHHHhhhcCeEEEEEecHH--------Hh--------h-hCCCcEEEEecCcch
Q 003316 104 DSPGHVDFSSEVTAALRITDGALVVVDCIE--------AL--------G-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 104 DTPGh~df~~ev~~al~~~D~avlVvda~~--------~~--------~-~~~~~ii~iNKiD~~ 151 (831)
||||+.++.......++.+|++++|+|+.. .+ . .+.|.++++||+|+.
T Consensus 51 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~ 115 (157)
T cd00882 51 DTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP 115 (157)
T ss_pred ecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence 999999998888889999999999999997 11 1 123446699999987
No 236
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.85 E-value=1.2e-08 Score=112.17 Aligned_cols=102 Identities=22% Similarity=0.233 Sum_probs=69.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
+..|+|+|.+|||||||+++|....-.+.. .. +.|+......+.+. +..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~-yp---------------fTT~~p~~G~v~~~---------------~~~ 206 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIAD-YP---------------FTTLHPNLGVVRVD---------------DYK 206 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCC-CC---------------CceeCceEEEEEeC---------------CCc
Confidence 568999999999999999999543211111 01 23444444445553 256
Q ss_pred eEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH------------Hhh------hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE------------ALG------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~------------~~~------~~~~~ii~iNKiD~~ 151 (831)
.+.++||||..+ +..+..+.+..+|++|+|||+.+ .+. ...|.++|+||+|++
T Consensus 207 ~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 207 SFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred EEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 799999999753 44566677788999999999874 111 134556799999987
No 237
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.84 E-value=1.5e-08 Score=101.06 Aligned_cols=100 Identities=16% Similarity=0.246 Sum_probs=67.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..++|||||+.+++.. ........ +. +... ...+.+ ++....+
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~--~f~~~~~~--t~----------~~~~---~~~~~~--------------~~~~~~l 52 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISH--SFPDYHDP--TI----------EDAY---KQQARI--------------DNEPALL 52 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhC--CCCCCcCC--cc----------cceE---EEEEEE--------------CCEEEEE
Confidence 6899999999999999998642 22110000 00 0000 011122 1235688
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh-----CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE-----RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~-----~~~~ii~iNKiD~~ 151 (831)
+|+||||..+|..-....++.+|++|+|+|..+ .+.+ ..|.++|.||+|+.
T Consensus 53 ~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 53 DILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred EEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 999999999998888888999999999999886 1211 23445699999976
No 238
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.5e-08 Score=99.30 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=80.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
..=.|.++|..|.|||.|+-++ .+ |...++....|-++....++.. +++.
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf-----------~~-----~~f~e~~~sTIGVDf~~rt~e~--------------~gk~ 57 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRF-----------KD-----DTFTESYISTIGVDFKIRTVEL--------------DGKT 57 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhh-----------cc-----CCcchhhcceeeeEEEEEEeee--------------cceE
Confidence 3557899999999999999888 22 2334444444555555555554 3467
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH----------------HhhhCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~----------------~~~~~~~~ii~iNKiD~~ 151 (831)
.++.++||.|..+|...+..-.|.|+|+|+|.|.+. ....++++++|.||.|+.
T Consensus 58 iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 58 IKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred EEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 799999999999999999999999999999999997 112346778899999987
No 239
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.83 E-value=1.3e-08 Score=102.64 Aligned_cols=101 Identities=16% Similarity=0.246 Sum_probs=68.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..++|||||+.+++... .... +. ..-|..... ..+.. ++....+
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~--f~~~---------~~---~T~g~~~~~--~~i~~--------------~~~~~~l 51 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGE--FDED---------YI---QTLGVNFME--KTISI--------------RGTEITF 51 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCC---------CC---CccceEEEE--EEEEE--------------CCEEEEE
Confidence 58999999999999999995431 1110 00 001111111 11222 1235789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh---hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~---~~~~~ii~iNKiD~~ 151 (831)
.++||+|+..|.......++.+|++++|+|.++ .+. ...+|++|.||+|+.
T Consensus 52 ~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~ 117 (182)
T cd04128 52 SIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLF 117 (182)
T ss_pred EEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 999999999998878888999999999999876 111 124567899999986
No 240
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.83 E-value=1.4e-08 Score=104.75 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=68.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++|..++|||||+++|+... .... . ...++.+.....+.+. ++....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~--~~~~--~------------~~ti~~d~~~~~i~~~-------------~~~~~~ 53 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR--FAEV--S------------DPTVGVDFFSRLIEIE-------------PGVRIK 53 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCC--C------------CceeceEEEEEEEEEC-------------CCCEEE
Confidence 579999999999999999996432 1110 0 0011111111112221 123568
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh-h---hCCCc-EEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL-G---ERIRP-VLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~-~---~~~~~-ii~iNKiD~~ 151 (831)
++++||||+..|.......++.+|++|+|+|..+ .+ . ...+| +|+.||+|+.
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 54 LQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred EEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 9999999999998877888899999999999986 11 1 12344 4588999986
No 241
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.82 E-value=3.1e-08 Score=104.55 Aligned_cols=103 Identities=27% Similarity=0.346 Sum_probs=66.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+.++|.|+|++|+|||||+.++....--+.. --+| . +|| ...+|.+ +
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~-----YPFT-----T--K~i----~vGhfe~----------------~ 213 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAP-----YPFT-----T--KGI----HVGHFER----------------G 213 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCC-----CCcc-----c--cce----eEeeeec----------------C
Confidence 46799999999999999999999332221111 0000 0 122 1223333 3
Q ss_pred CeeEEEEeCCCCcc--------hHHHHHHHhh-hcCeEEEEEecHH-----------Hh---h-hCCCcE-EEEecCcch
Q 003316 97 EYLINLIDSPGHVD--------FSSEVTAALR-ITDGALVVVDCIE-----------AL---G-ERIRPV-LTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~d--------f~~ev~~al~-~~D~avlVvda~~-----------~~---~-~~~~~i-i~iNKiD~~ 151 (831)
..++-+|||||.-| --.+.+.||+ ..+.+++++|.++ .+ . ...+|+ +|+||+|..
T Consensus 214 ~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~ 293 (346)
T COG1084 214 YLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIA 293 (346)
T ss_pred CceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 56899999999755 2344667776 5677899999998 11 1 123454 599999976
No 242
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.82 E-value=8.4e-09 Score=102.49 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=50.7
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeEEEE
Q 003316 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLI 103 (831)
Q Consensus 24 ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inli 103 (831)
|+|+.|+|||||+++|....-.+.. ..+.|+......+.+. .+..++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~---------------~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVAN----------------YPFTTLEPNLGVVEVP---------------DGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccC----------------CCceeecCcceEEEcC---------------CCCeEEEE
Confidence 5899999999999999543211111 1123333332333331 15689999
Q ss_pred eCCCCcc-------hHHHHHHHhhhcCeEEEEEecH
Q 003316 104 DSPGHVD-------FSSEVTAALRITDGALVVVDCI 132 (831)
Q Consensus 104 DTPGh~d-------f~~ev~~al~~~D~avlVvda~ 132 (831)
||||+.+ +..+....++.+|++++|+|+.
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~ 85 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDAS 85 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEecc
Confidence 9999843 2334566788899999999986
No 243
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.82 E-value=1.4e-08 Score=101.12 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=65.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeec-eeEEEEeechhhhhccccccCCCCeeE
Q 003316 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 22 I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
|+|+|..++|||||+++++... ....... |+... ...+.+ ++..+.+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~--~~~~~~~----------------~~~~~~~~~~~~--------------~~~~~~~ 48 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA--FPEDYVP----------------TVFENYSADVEV--------------DGKPVEL 48 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC--CCCCCCC----------------cEEeeeeEEEEE--------------CCEEEEE
Confidence 5899999999999999996532 1110000 00000 011111 1235678
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
.++||||..+|.......++.+|++|+|+|... .+.. ..|.+++.||+|+.
T Consensus 49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 115 (174)
T smart00174 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLR 115 (174)
T ss_pred EEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhh
Confidence 999999999988776777889999999999876 1111 34456699999987
No 244
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.82 E-value=1.7e-08 Score=101.00 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeece-eEEEEeechhhhhccccccCCCCe
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.+|+++|..|+|||||+.++++. ........ |+.... ..+.+. +..+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~--~f~~~~~p----------------t~~~~~~~~~~~~--------------~~~~ 49 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTN--KFPSEYVP----------------TVFDNYAVTVMIG--------------GEPY 49 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC--CCCCCCCC----------------ceeeeeEEEEEEC--------------CEEE
Confidence 47999999999999999999642 11110000 110000 112221 2357
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh---hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~---~~~~~ii~iNKiD~~ 151 (831)
.++|+||||+.+|..-....++.+|++|+|+|.++ .+. ...|.+++.||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (175)
T cd01874 50 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 118 (175)
T ss_pred EEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 89999999999998766678899999999999876 111 123445699999986
No 245
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.82 E-value=1.1e-08 Score=104.51 Aligned_cols=56 Identities=25% Similarity=0.243 Sum_probs=46.0
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh---hCCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~---~~~~~ii~iNKiD~~ 151 (831)
+...++|+||||+.+|.......++.+|++|+|+|.+. .+. .+.|.++|.||+|+.
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 42 GPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 36789999999999999888889999999999999987 121 234445699999975
No 246
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.80 E-value=3.2e-08 Score=108.72 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=67.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
+-.|+|+|.+++|||||+++|....-.+.. +. ..|.......+.+. +..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~----------y~------fTT~~p~ig~v~~~---------------~~~ 205 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIAD----------YP------FTTLVPNLGVVRVD---------------DGR 205 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccC----------CC------CCccCCEEEEEEeC---------------Cce
Confidence 578999999999999999999543211111 10 11222222333443 237
Q ss_pred eEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH---------------Hhh------hCCCcEEEEecCcc
Q 003316 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE---------------ALG------ERIRPVLTVNKMDR 150 (831)
Q Consensus 99 ~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~---------------~~~------~~~~~ii~iNKiD~ 150 (831)
.+.|+||||+.+ +.....+.+..+|++|+|+|+.. .+. ...|.++|+||+|+
T Consensus 206 ~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL 285 (329)
T TIGR02729 206 SFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDL 285 (329)
T ss_pred EEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccC
Confidence 899999999853 34455667778999999999872 111 13455679999998
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 286 ~ 286 (329)
T TIGR02729 286 L 286 (329)
T ss_pred C
Confidence 7
No 247
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.80 E-value=4.7e-08 Score=99.28 Aligned_cols=102 Identities=21% Similarity=0.285 Sum_probs=61.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
...++|+++|+.|+|||||+++|+.... +.. +. ...|.|..... ..+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~-------~~------~~~~~t~~~~~--~~~----------------- 68 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKN-LAR-------TS------KTPGRTQLINF--FEV----------------- 68 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccc-------cc------CCCCceeEEEE--Eec-----------------
Confidence 4678999999999999999999964321 100 00 01122322111 111
Q ss_pred CeeEEEEeCCCCc----------chHHHHHHHhh---hcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHV----------DFSSEVTAALR---ITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~----------df~~ev~~al~---~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
+..+.|+||||+. .|...+...++ .++++++|+|+.. .+.. +.+.++++||+|+.
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKL 148 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 3579999999963 23333333344 4478888898664 2222 34446699999976
No 248
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.80 E-value=9.7e-09 Score=102.25 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=65.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeec-eeEEEEeechhhhhccccccCCCCe
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
++|+++|+.++|||||+.+++...- ...... |+... ...+.+. +...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~--~~~~~~----------------t~~~~~~~~~~~~--------------~~~~ 49 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVP----------------TVFENYVADIEVD--------------GKQV 49 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CCCCCC----------------ccccceEEEEEEC--------------CEEE
Confidence 5799999999999999999965321 110000 11000 0112221 2356
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh---hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~---~~~~~ii~iNKiD~~ 151 (831)
.+.++||||+.+|.......++.+|++++|+|... .+. ...|.++++||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (175)
T cd01870 50 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 118 (175)
T ss_pred EEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcc
Confidence 78999999999887666677889999999998863 111 134556699999976
No 249
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.79 E-value=1.7e-08 Score=104.83 Aligned_cols=104 Identities=26% Similarity=0.297 Sum_probs=72.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|.+|+|||||+|.|+...-..... .++ .|.......+.- +
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~------K~~---------TTr~~ilgi~ts----------------~ 118 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSR------KVH---------TTRHRILGIITS----------------G 118 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccc------ccc---------ceeeeeeEEEec----------------C
Confidence 457899999999999999999996543222211 111 122222222221 4
Q ss_pred CeeEEEEeCCCCc------------chHHHHHHHhhhcCeEEEEEecHH-----------Hhhh--CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHV------------DFSSEVTAALRITDGALVVVDCIE-----------ALGE--RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~------------df~~ev~~al~~~D~avlVvda~~-----------~~~~--~~~~ii~iNKiD~~ 151 (831)
+.++.|.||||.+ .|......|+.-||.+++|+|+.. ++.+ ..|-|+|.||+|.+
T Consensus 119 eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~ 198 (379)
T KOG1423|consen 119 ETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKL 198 (379)
T ss_pred ceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcc
Confidence 7899999999943 255678899999999999999995 3332 35668899999987
No 250
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.79 E-value=4.2e-08 Score=111.99 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=57.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
-+..|+|+|.+++|||||+++|....-.|. |+ .+.|+......+.+. +
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIa----------dy------pfTTl~P~lGvv~~~----------------~ 205 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIA----------DY------PFTTLVPNLGVVQAG----------------D 205 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCcccc----------cc------CcccccceEEEEEEC----------------C
Confidence 357899999999999999999954321111 11 123444434444443 6
Q ss_pred eeEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecH
Q 003316 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCI 132 (831)
Q Consensus 98 ~~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~ 132 (831)
..|.|+||||..+ ...+..+.+..||++|+|||+.
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s 247 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCA 247 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCc
Confidence 7899999999643 2334566778899999999995
No 251
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.79 E-value=1.8e-08 Score=102.16 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=65.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeecee-EEEEeechhhhhccccccCCCCe
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
|+|+++|..|+|||||+.+++.. ....... -|+..... .+.. ++...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~--~~~~~~~----------------~t~~~~~~~~i~~--------------~~~~~ 48 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRG--YFPQVYE----------------PTVFENYVHDIFV--------------DGLHI 48 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCCCccC----------------CcceeeeEEEEEE--------------CCEEE
Confidence 57999999999999999999542 1111000 01100000 0111 12356
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
.++|+||||+.+|..-....++.+|++|+|.|..+ .+.. ..|.++|.||+|+.
T Consensus 49 ~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~ 117 (189)
T cd04134 49 ELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLR 117 (189)
T ss_pred EEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 89999999999887655567789999999998776 1111 23445699999987
No 252
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.78 E-value=6e-08 Score=104.12 Aligned_cols=112 Identities=22% Similarity=0.315 Sum_probs=66.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-||+++|+.|+|||||+++|+...-....... +.......+.+++......+... +....
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~------~~~~~~~~~T~~i~~~~~~i~~~--------------g~~~~ 64 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPP------DPAEEHIDKTVEIKSSKAEIEEN--------------GVKLK 64 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCC------CccccccCCceEEEEEEEEEEEC--------------CEEEE
Confidence 48999999999999999999554322111000 00111222333343333333332 22468
Q ss_pred EEEEeCCCCcchHH---------------------HHHHHhh-------hcCeEEEEEecHH------------HhhhCC
Q 003316 100 INLIDSPGHVDFSS---------------------EVTAALR-------ITDGALVVVDCIE------------ALGERI 139 (831)
Q Consensus 100 inliDTPGh~df~~---------------------ev~~al~-------~~D~avlVvda~~------------~~~~~~ 139 (831)
+++|||||..|+.. +-....| .+|++++++++.. .+.++.
T Consensus 65 l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~v 144 (276)
T cd01850 65 LTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKRV 144 (276)
T ss_pred EEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhccC
Confidence 99999999877532 1111222 4788999998763 334445
Q ss_pred CcEEEEecCcch
Q 003316 140 RPVLTVNKMDRC 151 (831)
Q Consensus 140 ~~ii~iNKiD~~ 151 (831)
+.++|+||+|+.
T Consensus 145 ~vi~VinK~D~l 156 (276)
T cd01850 145 NIIPVIAKADTL 156 (276)
T ss_pred CEEEEEECCCcC
Confidence 556699999986
No 253
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.77 E-value=3e-08 Score=97.65 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=66.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..++|||||+.+++. +..... .. ..+........+... +....+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~--~~~~~~-~~-------------~t~~~~~~~~~~~~~--------------~~~~~l 51 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD--NEFHSS-HI-------------STIGVDFKMKTIEVD--------------GIKVRI 51 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc--CCCCCC-CC-------------CceeeEEEEEEEEEC--------------CEEEEE
Confidence 689999999999999999853 222111 00 011111111122221 124678
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh---hh-CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL---GE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~---~~-~~~~ii~iNKiD~~ 151 (831)
.++||||..+|........+.+|++++|+|..+ .+ .. ..|.+++.||.|+.
T Consensus 52 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 52 QIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred EEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999999999998888888999999999999876 11 11 23445699999976
No 254
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.77 E-value=2.4e-08 Score=99.89 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=66.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeec-eeEEEEeechhhhhccccccCCCCee
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
+|+++|..++|||||+.+++.. ....... .|+... ...+.. ++....
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~--~f~~~~~----------------~t~~~~~~~~~~~--------------~~~~~~ 50 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTN--AFPGEYI----------------PTVFDNYSANVMV--------------DGKPVN 50 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCcCC----------------CcceeeeEEEEEE--------------CCEEEE
Confidence 6899999999999999988542 1111000 011000 011111 123578
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----H----h----hh---CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----A----L----GE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----~----~----~~---~~~~ii~iNKiD~~ 151 (831)
++|+||||..+|.......++.+|++|+|+|.+. . + .. ..|.++|.||+|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 118 (174)
T cd01871 51 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 118 (174)
T ss_pred EEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhc
Confidence 8999999999998777778899999999999975 0 1 11 23446699999986
No 255
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.77 E-value=4e-08 Score=103.79 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=65.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeee-eceeEEEEeechhhhhccccccCCCCee
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
+|+++|..|+|||||+++++.. ........ |+. .....+.. ++..+.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~--~f~~~y~p----------------Ti~d~~~k~~~i--------------~~~~~~ 49 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGG--RFEEQYTP----------------TIEDFHRKLYSI--------------RGEVYQ 49 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcC--CCCCCCCC----------------ChhHhEEEEEEE--------------CCEEEE
Confidence 5899999999999999999642 11110001 110 00111112 123578
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-------------hCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-------------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-------------~~~~~ii~iNKiD~~ 151 (831)
++|+||+|+.+|.......++.+|++|+|+|..+ .+. ...|.++++||+|+.
T Consensus 50 l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 50 LDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 9999999999998766667889999999999876 111 123446699999986
No 256
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.75 E-value=2.9e-08 Score=103.01 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=68.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeece-eEEEEeechhhhhccccccCCCCe
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.+|+++|..++|||||+.++.... .... +.+ |+.... ..+.+ ++...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~--f~~~---------y~p-------Ti~~~~~~~~~~--------------~~~~v 49 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA--YPGS---------YVP-------TVFENYTASFEI--------------DKRRI 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCc---------cCC-------ccccceEEEEEE--------------CCEEE
Confidence 478999999999999999995421 1110 000 110000 11222 22367
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------Hhh-------hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------ALG-------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~~~-------~~~~~ii~iNKiD~~ 151 (831)
.++|+||+|...|.......++.+|++|+|+|..+ .|. ...|.+||.||+|+.
T Consensus 50 ~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 50 ELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred EEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 89999999999998877788899999999999987 111 234556699999986
No 257
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.75 E-value=1.5e-08 Score=100.98 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=65.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..|+|||||+.+++... .... ... +..| .. ...+.. ++....+
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~-~~~~-~~~--t~~~-----------~~--~~~~~~--------------~~~~~~~ 50 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG-YPTE-YVP--TAFD-----------NF--SVVVLV--------------DGKPVRL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCC-CCC--ceee-----------ee--eEEEEE--------------CCEEEEE
Confidence 58999999999999999885421 1111 011 0000 00 011122 1235678
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
.++||||+..|.......++.+|++|+|+|..+ .+.. ..|.+++.||+|+.
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 51 QLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred EEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 999999999987766677889999999999886 1111 23445699999986
No 258
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.73 E-value=5.9e-08 Score=97.42 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=66.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeece-eEEEEeechhhhhccccccCCCCee
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
+|+++|..++|||||+.+++... ...... -|+.... ..+.. ++....
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~--f~~~~~----------------~t~~~~~~~~~~~--------------~~~~~~ 50 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDC--YPETYV----------------PTVFENYTASFEI--------------DEQRIE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCCCcC----------------CceEEEEEEEEEE--------------CCEEEE
Confidence 68999999999999999995431 111000 0110000 11122 123578
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------H-------hh---hCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------A-------LG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------~-------~~---~~~~~ii~iNKiD~~ 151 (831)
++|+||||+..|.......++.+|++|+|+|.++ + +. ...|.++|.||.|+.
T Consensus 51 l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 51 LSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred EEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 9999999999998777778899999999999876 1 11 123445699999985
No 259
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.73 E-value=5e-08 Score=97.02 Aligned_cols=105 Identities=17% Similarity=0.065 Sum_probs=68.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcc-cccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~-~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
.++.+|+++|..|+|||||+.+++.. ... .....+ . |.... ...+.+. +
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~--~f~~~~~~~T----------~--~~~~~--~~~~~~~--------------~ 51 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGR--SFSLNAYSPT----------I--KPRYA--VNTVEVY--------------G 51 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCC--CCCcccCCCc----------c--CcceE--EEEEEEC--------------C
Confidence 35789999999999999999999532 111 100110 0 00000 0112221 2
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------Hhh----hCCCc-EEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------ALG----ERIRP-VLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~~~----~~~~~-ii~iNKiD~~ 151 (831)
....++++||+|...|.......++.+|++|+|+|+.+ .+. ....| ++|+||+|+.
T Consensus 52 ~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 52 QEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred eEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 24678899999999887666677899999999999976 111 12344 5599999985
No 260
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.72 E-value=9.9e-08 Score=107.68 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=67.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
+.-|+++|.+++|||||+++|....-.+.. .. +.|+......+.+. .+.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~-yp---------------fTTl~PnlG~v~~~---------------~~~ 206 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIAN-YH---------------FTTLVPNLGVVETD---------------DGR 206 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCcccc-CC---------------cceeceEEEEEEEe---------------CCc
Confidence 458999999999999999999643322211 01 12333333333332 256
Q ss_pred eEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH---------------Hhh------hCCCcEEEEecCcc
Q 003316 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE---------------ALG------ERIRPVLTVNKMDR 150 (831)
Q Consensus 99 ~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~---------------~~~------~~~~~ii~iNKiD~ 150 (831)
.+.|+||||... +..+..+.+..+|++|+|||+.. .+. ...|.+||+||+|+
T Consensus 207 ~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 207 SFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred eEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 899999999753 33455666778999999999941 111 13455779999997
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 287 ~ 287 (424)
T PRK12297 287 P 287 (424)
T ss_pred c
Confidence 5
No 261
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=3.7e-08 Score=108.60 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=68.5
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
.+.-.+|+|+|++|+|||||+|+|......|....+|+ |.++-.+.+..+
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GT---------------TRDaiea~v~~~--------------- 314 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGT---------------TRDAIEAQVTVN--------------- 314 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCc---------------chhhheeEeecC---------------
Confidence 34457999999999999999999999988888777773 444445555543
Q ss_pred CCeeEEEEeCCCCcch---------HHHHHHHhhhcCeEEEEEecHH
Q 003316 96 NEYLINLIDSPGHVDF---------SSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 96 ~~~~inliDTPGh~df---------~~ev~~al~~~D~avlVvda~~ 133 (831)
++.+.|+||.|...- ......+++.+|.+++|||+.+
T Consensus 315 -G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~ 360 (531)
T KOG1191|consen 315 -GVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEE 360 (531)
T ss_pred -CeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccc
Confidence 899999999997651 2235677889999999999965
No 262
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.72 E-value=4.8e-08 Score=97.81 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=67.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeece-eEEEEeechhhhhccccccCCCCe
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.+|+++|+.++|||+|+.+++. +....... .|+.... ..+.. ++...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~--~~f~~~~~----------------~Ti~~~~~~~~~~--------------~~~~v 49 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS--NKFPTDYI----------------PTVFDNFSANVSV--------------DGNTV 49 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc--CCCCCCCC----------------CcceeeeEEEEEE--------------CCEEE
Confidence 4699999999999999999853 22211100 1111100 01111 22367
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------H-------hh---hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------A-------LG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------~-------~~---~~~~~ii~iNKiD~~ 151 (831)
.++|+||+|+.+|..-....++.+|++|||.|.+. . +. ...|.+||.||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 50 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred EEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 89999999999998877788999999999999875 1 11 123445699999986
No 263
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.72 E-value=8e-08 Score=99.46 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=67.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|+.|+|||||+++++. |...... ..|+........+. .+++..
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~--~~~~~~~----------------~~t~~~~~~~~~~~------------~~~~~i 58 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLT--GEFEKKY----------------IPTLGVEVHPLKFY------------TNCGPI 58 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHh--CCCCCCC----------------CCccceEEEEEEEE------------ECCeEE
Confidence 35799999999999999987753 2221100 01111111111221 122467
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------H------hhhCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------A------LGERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~------~~~~~~~ii~iNKiD~~ 151 (831)
.++++||||+.+|........+.+|++|+|+|..+ . ..++.|.+++.||+|+.
T Consensus 59 ~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 59 CFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred EEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 99999999999997776677789999999999985 0 11334445699999975
No 264
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.71 E-value=4.7e-08 Score=99.29 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=67.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-+|+++|..++|||||+.++++. ...... --|+.... ...+. .++....
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~--~f~~~~----------------~~t~~~~~-~~~~~------------~~~~~~~ 52 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTN--AFPKEY----------------IPTVFDNY-SAQTA------------VDGRTVS 52 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhC--CCCcCC----------------CCceEeee-EEEEE------------ECCEEEE
Confidence 47999999999999999999642 111100 01111100 00011 1224678
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------Hhh-------hCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------ALG-------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~~~-------~~~~~ii~iNKiD~~ 151 (831)
++|+||||+..|.......++.+|++|+|+|.++ .+. ...|.+||.||.|+.
T Consensus 53 l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 120 (191)
T cd01875 53 LNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLR 120 (191)
T ss_pred EEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhh
Confidence 9999999999998777777899999999999876 111 123445699999986
No 265
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.70 E-value=3.2e-08 Score=116.85 Aligned_cols=94 Identities=27% Similarity=0.321 Sum_probs=65.6
Q ss_pred eCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeEEEEeC
Q 003316 26 AHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDS 105 (831)
Q Consensus 26 Gh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDT 105 (831)
|..|+|||||+|+|....- . .+ ...|+|++.....+.+. ++.++++||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~---~--v~-----------n~pG~Tv~~~~~~i~~~----------------~~~i~lvDt 48 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ---T--VG-----------NWPGVTVEKKEGKLGFQ----------------GEDIEIVDL 48 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC---e--ec-----------CCCCeEEEEEEEEEEEC----------------CeEEEEEEC
Confidence 7899999999999943211 0 11 12467777766666664 668999999
Q ss_pred CCCcchHHH-----HHH---HhhhcCeEEEEEecHH---------Hh-hhCCCcEEEEecCcch
Q 003316 106 PGHVDFSSE-----VTA---ALRITDGALVVVDCIE---------AL-GERIRPVLTVNKMDRC 151 (831)
Q Consensus 106 PGh~df~~e-----v~~---al~~~D~avlVvda~~---------~~-~~~~~~ii~iNKiD~~ 151 (831)
||+.+|... +.+ ..+.+|++++|+|+.. .+ ..+.|.++++||+|+.
T Consensus 49 PG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 49 PGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred CCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 999887532 222 2247899999999986 22 2344556699999986
No 266
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.69 E-value=1e-07 Score=97.42 Aligned_cols=88 Identities=17% Similarity=0.278 Sum_probs=57.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..++|||||+.+++... .... . ...-|.++... .+.+.. ....+..+.+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~--f~~~-~-----------~~Tig~~~~~k--~~~~~~---------~~~~~~~~~l 56 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQ--VLGR-P-----------SWTVGCSVDVK--HHTYKE---------GTPEEKTFFV 56 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCC-C-----------CcceeeeEEEE--EEEEcC---------CCCCCcEEEE
Confidence 58999999999999999995321 1110 0 00001122111 122210 0012246789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
+|+||+|+.+|.......++.+|++|+|.|.+.
T Consensus 57 ~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn 89 (202)
T cd04102 57 ELWDVGGSESVKSTRAVFYNQVNGIILVHDLTN 89 (202)
T ss_pred EEEecCCchhHHHHHHHHhCcCCEEEEEEECcC
Confidence 999999999998877788899999999999876
No 267
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.69 E-value=2.9e-07 Score=97.12 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=65.5
Q ss_pred HhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccc
Q 003316 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 90 (831)
Q Consensus 11 ~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~ 90 (831)
++........||+++|++|+|||||+|+|+........ ++. +.|.........+.
T Consensus 23 ~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~---------~~~------~~T~~~~~~~~~~~---------- 77 (249)
T cd01853 23 KGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATS---------AFQ------SETLRVREVSGTVD---------- 77 (249)
T ss_pred HhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC---------CCC------CceEEEEEEEEEEC----------
Confidence 34444456689999999999999999999765432221 111 11222222223332
Q ss_pred cccCCCCeeEEEEeCCCCcchHH------HHH----HHhh--hcCeEEEEEecHH------------Hhhh--C----CC
Q 003316 91 GERQGNEYLINLIDSPGHVDFSS------EVT----AALR--ITDGALVVVDCIE------------ALGE--R----IR 140 (831)
Q Consensus 91 ~~~~~~~~~inliDTPGh~df~~------ev~----~al~--~~D~avlVvda~~------------~~~~--~----~~ 140 (831)
+..+++|||||..+... ++. +.+. ..|.+++|..... .+.+ + .+
T Consensus 78 ------g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~ 151 (249)
T cd01853 78 ------GFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRN 151 (249)
T ss_pred ------CeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhC
Confidence 67899999999987731 111 1221 4677777753332 2222 1 34
Q ss_pred cEEEEecCcch
Q 003316 141 PVLTVNKMDRC 151 (831)
Q Consensus 141 ~ii~iNKiD~~ 151 (831)
.++|+||.|..
T Consensus 152 ~ivV~T~~d~~ 162 (249)
T cd01853 152 AIVVLTHAASS 162 (249)
T ss_pred EEEEEeCCccC
Confidence 56799999985
No 268
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.69 E-value=1.2e-07 Score=95.50 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=67.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeece-eEEEEeechhhhhccccccCCCC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
..+|+++|..++|||||+.+++... .... + .-|+.... ..+.. ++..
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~--f~~~---------~-------~pT~~~~~~~~~~~--------------~~~~ 52 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC--FPEN---------Y-------VPTVFENYTASFEI--------------DTQR 52 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC--CCCc---------c-------CCceeeeeEEEEEE--------------CCEE
Confidence 4579999999999999999996432 1110 0 00111000 11111 2235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------H---h----hh---CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------A---L----GE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------~---~----~~---~~~~ii~iNKiD~~ 151 (831)
..+.|+||+|...|..-....++.+|++|+|+|.++ + | .+ ..|.+||.||+|+.
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred EEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 789999999999998777778899999999999887 1 1 11 23446699999975
No 269
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=8.6e-08 Score=95.02 Aligned_cols=115 Identities=23% Similarity=0.356 Sum_probs=79.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
.-+.|-++|..|+|||+|.-.|++.+. .++ + .+|......+.+. +
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~------~~T--v-----------tSiepn~a~~r~g----------------s 81 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSH------RGT--V-----------TSIEPNEATYRLG----------------S 81 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCc------cCe--e-----------eeeccceeeEeec----------------C
Confidence 347889999999999999998854311 221 1 2344444444442 4
Q ss_pred eeEEEEeCCCCcchHHHHHHHhh---hcCeEEEEEecHH---------------Hh----hhCCCcEE-EEecCcchhhc
Q 003316 98 YLINLIDSPGHVDFSSEVTAALR---ITDGALVVVDCIE---------------AL----GERIRPVL-TVNKMDRCFLE 154 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~---~~D~avlVvda~~---------------~~----~~~~~~ii-~iNKiD~~~~~ 154 (831)
...+|||-|||.........-+. .+-++|||||+.. .+ ..+.+|++ +.||-|+.
T Consensus 82 ~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~--- 158 (238)
T KOG0090|consen 82 ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF--- 158 (238)
T ss_pred cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh---
Confidence 45899999999998877766665 7899999999997 11 24567766 99999998
Q ss_pred cCCCHHHHHH-HHHHHHH
Q 003316 155 LQVDGEEAYQ-TFQKVIE 171 (831)
Q Consensus 155 ~~~~~~~~~~-~l~~~~~ 171 (831)
-+.+.+..+ .++.=++
T Consensus 159 -tAkt~~~Ir~~LEkEi~ 175 (238)
T KOG0090|consen 159 -TAKTAEKIRQQLEKEIH 175 (238)
T ss_pred -hcCcHHHHHHHHHHHHH
Confidence 776555443 4444333
No 270
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.66 E-value=8.4e-08 Score=99.80 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=61.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..|+|||||+++++. +..... .+.+. -+. .....++.+. +....+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~--~~~~~~--------~~~~t---~~~--~~~~~~i~~~--------------~~~~~l 52 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTS--GEYDDH--------AYDAS---GDD--DTYERTVSVD--------------GEESTL 52 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhc--CCcCcc--------CcCCC---ccc--cceEEEEEEC--------------CEEEEE
Confidence 689999999999999999952 211100 00000 000 0011112221 236789
Q ss_pred EEEeCCCCcchHHHHHHHhh-hcCeEEEEEecHH------------Hhhh-----CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALR-ITDGALVVVDCIE------------ALGE-----RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~-~~D~avlVvda~~------------~~~~-----~~~~ii~iNKiD~~ 151 (831)
+++||||+.++... ..++ .+|++++|+|+++ .+.. ..|.++|.||+|+.
T Consensus 53 ~i~Dt~G~~~~~~~--~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 53 VVIDHWEQEMWTED--SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred EEEeCCCcchHHHh--HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 99999999844332 3556 8999999999986 1111 24556699999986
No 271
>PLN00023 GTP-binding protein; Provisional
Probab=98.65 E-value=1.3e-07 Score=101.91 Aligned_cols=99 Identities=17% Similarity=0.270 Sum_probs=60.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|+.++|||||+.+++... .... ....-|.+.... .+.+.........+. ..++..
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~--F~~~------------~~pTIG~d~~ik--~I~~~~~~~~~~~ik-~d~~k~ 82 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGS--SIAR------------PPQTIGCTVGVK--HITYGSPGSSSNSIK-GDSERD 82 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCC--cccc------------cCCceeeeEEEE--EEEECCccccccccc-ccCCce
Confidence 34679999999999999999995321 1100 000012222211 222221000000000 001235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
+.++|+||+|+..|..-....++.+|++|+|+|.+.
T Consensus 83 v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITd 118 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQ 118 (334)
T ss_pred EEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCC
Confidence 789999999999998877788999999999999887
No 272
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.64 E-value=2.6e-07 Score=90.64 Aligned_cols=101 Identities=21% Similarity=0.311 Sum_probs=67.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..++|||||+.++.... .... . .+ ..|.. .....+.. ++..+.+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~--~~~~-~--------~~---t~~~~--~~~~~~~~--------------~~~~~~l 50 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE--FPEN-Y--------IP---TIGID--SYSKEVSI--------------DGKPVNL 50 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS--TTSS-S--------ET---TSSEE--EEEEEEEE--------------TTEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhc--cccc-c--------cc---ccccc--cccccccc--------------ccccccc
Confidence 58999999999999999985432 1110 0 00 00111 11122222 1346789
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------H---hhhCCCc-EEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------A---LGERIRP-VLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~---~~~~~~~-ii~iNKiD~~ 151 (831)
.|+||+|+..|.......++.+|++|+|.|... . .....+| +++.||.|+.
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~ 117 (162)
T PF00071_consen 51 EIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS 117 (162)
T ss_dssp EEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 999999999998877788999999999999886 1 1111245 4588999987
No 273
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=5.2e-07 Score=95.63 Aligned_cols=145 Identities=23% Similarity=0.285 Sum_probs=99.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceE-EecCchhhheeceeeeeceeEEEEeechhhhhcccc------c
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR-MTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG------E 92 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~-~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~------~ 92 (831)
..++++|..|+|||||+..| ..|-++.. .|+++ -+-..+.|.+.|-|-..+.-.+.|+.....++ ++. -
T Consensus 168 vRvAVlGg~D~GKSTLlGVL--TQgeLDnG-~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVN-Y~~~~taEEi 243 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVL--TQGELDNG-NGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVN-YAQNMTAEEI 243 (591)
T ss_pred EEEEEecCcccCcceeeeee--ecccccCC-CCeeeeehhcchhhhccCcccccchhcccccccccccc-hhhcccHHHH
Confidence 46899999999999999877 44444432 34444 24567888888887766666666653332221 111 1
Q ss_pred cCCCCeeEEEEeCCCCcchHHHHHHHhh--hcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCC
Q 003316 93 RQGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVD 158 (831)
Q Consensus 93 ~~~~~~~inliDTPGh~df~~ev~~al~--~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~ 158 (831)
.+..+..+++||-.||..|...++-+|. -.|.|+|||+|.. ...-+.|.+++++|||+. .-
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~----~~- 318 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLV----DR- 318 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccc----cc-
Confidence 2345778999999999999999988887 4799999999987 233355667799999987 43
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 003316 159 GEEAYQTFQKVIENANVIMA 178 (831)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~l~ 178 (831)
+-+++++.++..++.
T Consensus 319 -----~~~~~tv~~l~nll~ 333 (591)
T KOG1143|consen 319 -----QGLKKTVKDLSNLLA 333 (591)
T ss_pred -----hhHHHHHHHHHHHHh
Confidence 235556666555443
No 274
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.64 E-value=1.7e-07 Score=97.82 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=67.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeece-eEEEEeechhhhhccccccCCCCe
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
-.|+++|..++|||+|+.+++.. ........ |+.... ..+.. ++...
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~--~F~~~y~p----------------Ti~~~~~~~i~~--------------~~~~v 61 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKD--CYPETYVP----------------TVFENYTAGLET--------------EEQRV 61 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcC--CCCCCcCC----------------ceeeeeEEEEEE--------------CCEEE
Confidence 47899999999999999998532 11110000 110000 01111 22367
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------H-------hh---hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------A-------LG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------~-------~~---~~~~~ii~iNKiD~~ 151 (831)
.++|+||+|..+|..-....++.+|++|+|+|.+. + +. ...|.++|.||+|+.
T Consensus 62 ~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 62 ELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred EEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 89999999999998777778899999999999976 1 11 123446699999975
No 275
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.62 E-value=2.7e-07 Score=91.83 Aligned_cols=101 Identities=18% Similarity=0.275 Sum_probs=64.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCc-ccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGII-AQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i-~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
....-||++|+.|+|||||+|+|....+.. .....| .|.... .|.+.
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPG---------------rTq~iN--ff~~~--------------- 69 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPG---------------RTQLIN--FFEVD--------------- 69 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCC---------------ccceeE--EEEec---------------
Confidence 346789999999999999999996654321 111244 343322 23332
Q ss_pred CCeeEEEEeCCCCc----------chHHHHHHHh---hhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcc
Q 003316 96 NEYLINLIDSPGHV----------DFSSEVTAAL---RITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDR 150 (831)
Q Consensus 96 ~~~~inliDTPGh~----------df~~ev~~al---~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~ 150 (831)
..+.|||-||+- .....+..-+ ....+++++||+.. .+. .+.|+++++||+|+
T Consensus 70 --~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DK 147 (200)
T COG0218 70 --DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADK 147 (200)
T ss_pred --CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 248899999963 1112222222 24788999999987 233 35666779999997
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 148 i 148 (200)
T COG0218 148 L 148 (200)
T ss_pred C
Confidence 7
No 276
>PRK09866 hypothetical protein; Provisional
Probab=98.62 E-value=2.6e-07 Score=106.04 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=41.8
Q ss_pred CeeEEEEeCCCCcc-----hHHHHHHHhhhcCeEEEEEecHH-----------HhhhCC---CcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVD-----FSSEVTAALRITDGALVVVDCIE-----------ALGERI---RPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~d-----f~~ev~~al~~~D~avlVvda~~-----------~~~~~~---~~ii~iNKiD~~ 151 (831)
..++.|+||||... +...+..++..+|.+++|||+.. .+.... |.++++||+|+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 35789999999643 45567789999999999999975 233323 445699999975
No 277
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.61 E-value=3.8e-08 Score=83.65 Aligned_cols=71 Identities=35% Similarity=0.531 Sum_probs=58.8
Q ss_pred eEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eee
Q 003316 381 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLT 456 (831)
Q Consensus 381 l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~ 456 (831)
++++|||||+|++||+|++++ +.+.. +....+|.+|+.+++...++++.+.||+++++.++++++ +.| |||
T Consensus 3 v~~grV~sG~l~~gd~v~~~~-~~~~~---~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i-~~Gdtl~ 74 (74)
T PF03144_consen 3 VATGRVYSGTLKKGDKVRVLP-NGTGK---KGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAI-RRGDTLT 74 (74)
T ss_dssp EEEEEEEESEEETTEEEEEES-TTTTE---ECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCS-STTEEEE
T ss_pred EEEEEEEEeEEcCCCEEEECc-cCCcc---eeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCc-CcCCEEC
Confidence 899999999999999999875 32211 123479999999999999999999999999999999832 567 775
No 278
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.61 E-value=1.2e-07 Score=96.77 Aligned_cols=103 Identities=19% Similarity=0.160 Sum_probs=57.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.|+|||||+++|+...... .|.. .+.. ...|... . .+. ......+
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~----~~~~-~~~~------~~~t~~~--~--~~~-------------~~~~~~l 54 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEE----EGAA-PTGV------VETTMKR--T--PYP-------------HPKFPNV 54 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC----CCcc-ccCc------cccccCc--e--eee-------------cCCCCCc
Confidence 69999999999999999996532110 1110 0000 0011110 0 111 0013468
Q ss_pred EEEeCCCCcchH---HHHH--HHhhhcCeEEEEEecHH---------Hhhh-CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFS---SEVT--AALRITDGALVVVDCIE---------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~---~ev~--~al~~~D~avlVvda~~---------~~~~-~~~~ii~iNKiD~~ 151 (831)
.++||||..+.. .+.. ..+..+|..++|.|..- .+.+ +.+.++|+||+|+.
T Consensus 55 ~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~ 120 (197)
T cd04104 55 TLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred eEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccch
Confidence 999999986432 1211 23567898888866542 2233 34456699999986
No 279
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.58 E-value=4.8e-07 Score=93.56 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=91.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
...-||-|+|.+|+|||+|+|+|.......... .|. ...+..+. |. ...
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~-vg~----~t~~~~~~-------------~~-------------~~~ 85 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSK-VGV----GTDITTRL-------------RL-------------SYD 85 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeee-ccc----CCCchhhH-------------Hh-------------hcc
Confidence 456799999999999999999997543322111 120 11111110 00 112
Q ss_pred CeeEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH--------H-----hhh-CCCcEEEEecCcchhh--
Q 003316 97 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE--------A-----LGE-RIRPVLTVNKMDRCFL-- 153 (831)
Q Consensus 97 ~~~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~--------~-----~~~-~~~~ii~iNKiD~~~~-- 153 (831)
...++|+||||..| .......-+...|.+++++|+.+ . ..- ..+.+++||..|+..-
T Consensus 86 ~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~ 165 (296)
T COG3596 86 GENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGR 165 (296)
T ss_pred ccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcccc
Confidence 46799999999887 55557777889999999999998 1 111 2445669999998632
Q ss_pred cc----CCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEE
Q 003316 154 EL----QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAF 208 (831)
Q Consensus 154 ~~----~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~ 208 (831)
++ +.....+.+.+++..+.+...+.. +. +|.+.++..+|++
T Consensus 166 ~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~----------V~----pV~~~~~r~~wgl 210 (296)
T COG3596 166 EWDSAGHQPSPAIKQFIEEKAEALGRLFQE----------VK----PVVAVSGRLPWGL 210 (296)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhh----------cC----CeEEeccccCccH
Confidence 22 122344455566666665555432 11 4778887888866
No 280
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.58 E-value=7.4e-08 Score=87.29 Aligned_cols=89 Identities=22% Similarity=0.360 Sum_probs=65.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
+.|+++|.+|+|||||+++|-.+.-...+. -.++|. +.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKT-------------------------QAve~~----------------d~- 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKT-------------------------QAVEFN----------------DK- 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhccc-------------------------ceeecc----------------Cc-
Confidence 478999999999999999993332222111 112342 11
Q ss_pred EEEEeCCC----CcchHHHHHHHhhhcCeEEEEEecHH--------HhhhCCCcEE-EEecCcch
Q 003316 100 INLIDSPG----HVDFSSEVTAALRITDGALVVVDCIE--------ALGERIRPVL-TVNKMDRC 151 (831)
Q Consensus 100 inliDTPG----h~df~~ev~~al~~~D~avlVvda~~--------~~~~~~~~ii-~iNKiD~~ 151 (831)
-.||||| |..........+..+|..++|-.+++ .+.-+.+++| +|+|.|+.
T Consensus 40 -~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 40 -GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLA 103 (148)
T ss_pred -cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCcccccccccceEEEEeccccc
Confidence 2599999 77788888999999999999999887 4444556677 99999988
No 281
>COG2262 HflX GTPases [General function prediction only]
Probab=98.56 E-value=2.2e-07 Score=101.13 Aligned_cols=104 Identities=25% Similarity=0.313 Sum_probs=69.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
..+..|+++|-+|||||||+|+|....-...... =-|.+.+.-.+.+. +
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~L----------------FATLdpttR~~~l~---------------~ 238 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQL----------------FATLDPTTRRIELG---------------D 238 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccc----------------cccccCceeEEEeC---------------C
Confidence 3578899999999999999999942211111110 01333333444443 3
Q ss_pred CeeEEEEeCCCCcc-h-------HHHHHHHhhhcCeEEEEEecHH------------Hhhh---CCCcE-EEEecCcch
Q 003316 97 EYLINLIDSPGHVD-F-------SSEVTAALRITDGALVVVDCIE------------ALGE---RIRPV-LTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~d-f-------~~ev~~al~~~D~avlVvda~~------------~~~~---~~~~i-i~iNKiD~~ 151 (831)
+..+.|.||-|+++ . ...+......+|..+.|||+++ .+.+ ..+|+ +|.||+|+.
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~ 317 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLL 317 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc
Confidence 67899999999864 1 1234455578999999999998 2332 23555 599999977
No 282
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=1.5e-07 Score=92.02 Aligned_cols=103 Identities=23% Similarity=0.266 Sum_probs=73.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.-.|+++|..++|||||+.++.. +..++. .|. ||-.+..+-.+.. +....
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk--~~F~e~------------~e~----TIGaaF~tktv~~------------~~~~i 54 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVK--DQFHEN------------IEP----TIGAAFLTKTVTV------------DDNTI 54 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhh--Cccccc------------ccc----ccccEEEEEEEEe------------CCcEE
Confidence 34789999999999999988832 222221 111 4444444444431 22367
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCc--E--EEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRP--V--LTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~--i--i~iNKiD~~ 151 (831)
++.|+||.|..+|.+-.-.-.|.|++||+|.|.+. -+.+..+| + ++.||+|+.
T Consensus 55 kfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~ 123 (200)
T KOG0092|consen 55 KFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL 123 (200)
T ss_pred EEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh
Confidence 88999999999998888888899999999999997 23444445 2 388999988
No 283
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.52 E-value=1.5e-07 Score=88.73 Aligned_cols=104 Identities=22% Similarity=0.270 Sum_probs=73.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
..-.|.++|..|.|||+|+-++... .. +++..-.|-++-....+.. +++.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~--~f--------------d~~~~~tIGvDFkvk~m~v--------------dg~~ 59 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSN--TF--------------DDLHPTTIGVDFKVKVMQV--------------DGKR 59 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhc--cc--------------CccCCceeeeeEEEEEEEE--------------cCce
Confidence 3568999999999999999877332 11 1222222333333333333 4568
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------Hhhh------C--CCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------ALGE------R--IRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~~~~------~--~~~ii~iNKiD~~ 151 (831)
.++.|+||.|...|..-+..-.|.|-|+|+|.|.+. .+++ + ...++|.||+|+.
T Consensus 60 ~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 60 LKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred EEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence 899999999999999999999999999999999987 1111 1 2235599999976
No 284
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1e-06 Score=81.83 Aligned_cols=102 Identities=20% Similarity=0.288 Sum_probs=73.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeece--eEEEEeechhhhhccccccCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (831)
-.-.|.++|..|.|||.|+.++ ..|.....+ |-||-... -++.. ++
T Consensus 6 flfkivlvgnagvgktclvrrf--tqglfppgq----------------gatigvdfmiktvev--------------~g 53 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRF--TQGLFPPGQ----------------GATIGVDFMIKTVEV--------------NG 53 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhh--hccCCCCCC----------------CceeeeeEEEEEEEE--------------CC
Confidence 3457999999999999999987 666665431 12222211 11222 23
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------Hhh-------hCCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------ALG-------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~~~-------~~~~~ii~iNKiD~~ 151 (831)
...++.|+||.|...|..-+-.-.|-+++.|||.|... .+. .++.-|+|.||+|+.
T Consensus 54 ekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~ 125 (213)
T KOG0095|consen 54 EKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA 125 (213)
T ss_pred eEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh
Confidence 46789999999999999999999999999999999886 111 123346799999976
No 285
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.48 E-value=3.3e-07 Score=92.65 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=62.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeec-eeEEEEeechhhhhccccccCCCCe
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.+|+++|..|+|||||++++... ..... .. .|+... ...+.+. +...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~--~~~~~-~~---------------~t~~~~~~~~~~~~--------------~~~~ 49 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLG--EFPEE-YH---------------PTVFENYVTDCRVD--------------GKPV 49 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCCcc-cC---------------CcccceEEEEEEEC--------------CEEE
Confidence 47999999999999999999521 11110 00 011000 0011121 1245
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh---hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~---~~~~~ii~iNKiD~~ 151 (831)
.++++||||+.+|.......++.+|++++|.|... .+. ...|.+++.||+|+.
T Consensus 50 ~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~ 118 (187)
T cd04129 50 QLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred EEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhh
Confidence 68899999998876544456789999999998875 111 123446699999985
No 286
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.48 E-value=1e-06 Score=86.25 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=57.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeEE
Q 003316 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLIN 101 (831)
Q Consensus 22 I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (831)
|+++|+.|+|||||++.|...... ... .+ ..+.|... ..+.+ +..+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-~~~-~~------------~~~~t~~~--~~~~~-----------------~~~~~ 48 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-ART-SK------------TPGKTQLI--NFFNV-----------------NDKFR 48 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-eee-cC------------CCCcceeE--EEEEc-----------------cCeEE
Confidence 789999999999999999532111 110 11 11222221 11222 23889
Q ss_pred EEeCCCCcch----------HHHHHHHh---hhcCeEEEEEecHH-----------HhhhCC-CcEEEEecCcch
Q 003316 102 LIDSPGHVDF----------SSEVTAAL---RITDGALVVVDCIE-----------ALGERI-RPVLTVNKMDRC 151 (831)
Q Consensus 102 liDTPGh~df----------~~ev~~al---~~~D~avlVvda~~-----------~~~~~~-~~ii~iNKiD~~ 151 (831)
++||||+.+. ...+...+ ..++++++|+|... .+.... |.++++||+|+.
T Consensus 49 ~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 49 LVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred EecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 9999997653 22222222 34678899998864 233333 446699999975
No 287
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.47 E-value=6.8e-07 Score=93.70 Aligned_cols=81 Identities=26% Similarity=0.316 Sum_probs=55.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
.|+++|.+++|||||+++|...... .+. + .+.|.......+.+. +..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-----v~~-----~------~~tT~~~~~g~~~~~----------------~~~i 49 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-----VAA-----Y------EFTTLTCVPGVLEYK----------------GAKI 49 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-----ccC-----C------CCccccceEEEEEEC----------------CeEE
Confidence 5899999999999999999533211 110 0 012222222333443 6789
Q ss_pred EEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH
Q 003316 101 NLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 101 nliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~ 133 (831)
+++||||+.+ +..++...++.+|++++|+|+..
T Consensus 50 ~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 50 QLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred EEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCc
Confidence 9999999854 34567788999999999999875
No 288
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.44 E-value=3.4e-06 Score=80.26 Aligned_cols=98 Identities=24% Similarity=0.285 Sum_probs=72.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
--.|-|+|.-||||||++++|+...-- ....-+|.-| .++.++ .+
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~---------------~i~pt~gf~I----ktl~~~----------------~~ 60 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTD---------------TISPTLGFQI----KTLEYK----------------GY 60 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCcc---------------ccCCccceee----EEEEec----------------ce
Confidence 345889999999999999999544310 1111123333 344553 89
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh-h---CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG-E---RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~-~---~~~~ii~iNKiD~~ 151 (831)
.+|++|--|...+..-...-...+||.|.|||+.+ ++. + +.+++++.||.|.+
T Consensus 61 ~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 61 TLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred EEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 99999999999988888888899999999999987 111 1 35777899999998
No 289
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.43 E-value=1.7e-06 Score=89.83 Aligned_cols=101 Identities=19% Similarity=0.231 Sum_probs=63.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|.++|+.++||||....+......- | ...-|-|+......+.+. +...+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-----------d----T~~L~~T~~ve~~~v~~~---------------~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-----------D----TLRLEPTIDVEKSHVRFL---------------SFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-----------G----GGG-----SEEEEEEECT---------------TSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-----------h----ccccCCcCCceEEEEecC---------------CCcEE
Confidence 47899999999999998884332111 1 112234554444444433 36699
Q ss_pred EEEeCCCCcchHHH-----HHHHhhhcCeEEEEEecHH---------------HhhhC---CCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSE-----VTAALRITDGALVVVDCIE---------------ALGER---IRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~e-----v~~al~~~D~avlVvda~~---------------~~~~~---~~~ii~iNKiD~~ 151 (831)
+|+|+||+.+|... ...-++.+++.|+|+|+.. ++.+. .+..+++.|||..
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l 124 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL 124 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC
Confidence 99999999988664 4667899999999999993 22222 2335699999976
No 290
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.43 E-value=8.8e-07 Score=91.64 Aligned_cols=102 Identities=25% Similarity=0.248 Sum_probs=69.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
..|+++|..|+|||||+.+|....- .+ +.. .|+.......... .......
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~--~~--------------~~~--~t~~~~~~~~~~~------------~~~~~~~ 55 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF--PE--------------GYP--PTIGNLDPAKTIE------------PYRRNIK 55 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC--cc--------------cCC--CceeeeeEEEEEE------------eCCCEEE
Confidence 7899999999999999999943321 11 111 1211111111111 0112567
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh----CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~----~~~~ii~iNKiD~~ 151 (831)
+.++||+|+.+|..-+....+.++++++|+|... .+.. ..+.+++.||+|+.
T Consensus 56 ~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 56 LQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred EEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 8999999999998888888899999999999985 1222 24556699999998
No 291
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=1.3e-06 Score=85.55 Aligned_cols=105 Identities=20% Similarity=0.144 Sum_probs=75.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+.-.+.++|.-+.|||+|+.++.|..---+ -+-||-....+..+. .++.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~------------------YqATIGiDFlskt~~------------l~d~ 69 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNT------------------YQATIGIDFLSKTMY------------LEDR 69 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhccc------------------ccceeeeEEEEEEEE------------EcCc
Confidence 3445899999999999999999988642110 011232222222222 2345
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------HhhhCCC---c-EEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGERIR---P-VLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~~~~---~-ii~iNKiD~~ 151 (831)
.+++-|+||.|.+.|..-+-.-+|.+.+||+|.|.++ +..++.. . ++|.||-|+.
T Consensus 70 ~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~ 141 (221)
T KOG0094|consen 70 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS 141 (221)
T ss_pred EEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc
Confidence 7889999999999999999999999999999999987 3344432 2 3499999987
No 292
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.40 E-value=3.3e-06 Score=90.57 Aligned_cols=114 Identities=15% Similarity=0.228 Sum_probs=66.6
Q ss_pred HHHHHhhcc----cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeec
Q 003316 7 EELRRIMDF----KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMT 82 (831)
Q Consensus 7 ~~~~~~~~~----~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~ 82 (831)
+.|.+++.+ ..+..+|+++|..|+|||||+|+|+...-.......+ .|......+..+
T Consensus 22 ~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s---------------~t~~~~~~~~~~--- 83 (313)
T TIGR00991 22 TKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQS---------------EGLRPMMVSRTR--- 83 (313)
T ss_pred HHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC---------------cceeEEEEEEEE---
Confidence 345555543 2346789999999999999999997543322111000 011111112222
Q ss_pred hhhhhccccccCCCCeeEEEEeCCCCcchH---HHHHHHhh------hcCeEEEEE--ecHH----------Hhhh----
Q 003316 83 DAALKSYRGERQGNEYLINLIDSPGHVDFS---SEVTAALR------ITDGALVVV--DCIE----------ALGE---- 137 (831)
Q Consensus 83 ~~~~~~~~~~~~~~~~~inliDTPGh~df~---~ev~~al~------~~D~avlVv--da~~----------~~~~---- 137 (831)
.+..+++|||||..+.. .+....++ ..|++++|. |... .+.+
T Consensus 84 -------------~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~ 150 (313)
T TIGR00991 84 -------------AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK 150 (313)
T ss_pred -------------CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh
Confidence 27799999999988652 22233333 488999994 4321 1211
Q ss_pred --CCCcEEEEecCcch
Q 003316 138 --RIRPVLTVNKMDRC 151 (831)
Q Consensus 138 --~~~~ii~iNKiD~~ 151 (831)
..+.|+++++.|..
T Consensus 151 ~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 151 DIWRKSLVVLTHAQFS 166 (313)
T ss_pred hhhccEEEEEECCccC
Confidence 13557799999964
No 293
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.37 E-value=6.9e-07 Score=94.12 Aligned_cols=83 Identities=25% Similarity=0.342 Sum_probs=58.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.-.|+++|.+.+|||||+++|.... ++ .+. ..+ .|...-..-+.| ++-
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~---se--va~---y~F--------TTl~~VPG~l~Y----------------~ga 110 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTK---SE--VAD---YPF--------TTLEPVPGMLEY----------------KGA 110 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCC---cc--ccc---cCc--------eecccccceEee----------------cCc
Confidence 4679999999999999999993322 21 221 111 123333333445 388
Q ss_pred eEEEEeCCCCcch-------HHHHHHHhhhcCeEEEEEecHH
Q 003316 99 LINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 99 ~inliDTPGh~df-------~~ev~~al~~~D~avlVvda~~ 133 (831)
.|-|+|+||...= -.++...+|.||.+++|+|+.+
T Consensus 111 ~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 111 QIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFE 152 (365)
T ss_pred eEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCC
Confidence 9999999997531 3568899999999999999986
No 294
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.36 E-value=1.6e-06 Score=85.22 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=58.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|..|+|||||+.+++.. ..... ..+.. +- . ...+.+. +....+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~--~f~~~---------~~~~~---~~-~---~~~i~~~--------------~~~~~l 49 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTG--SYVQL---------ESPEG---GR-F---KKEVLVD--------------GQSHLL 49 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhC--CCCCC---------CCCCc---cc-e---EEEEEEC--------------CEEEEE
Confidence 6999999999999999988542 11110 00000 00 0 0112221 235678
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-h---CCCc-EEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-E---RIRP-VLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-~---~~~~-ii~iNKiD~~ 151 (831)
.++||+|..+. ...+.+|++++|+|..+ .+. . ...| +++.||.|+.
T Consensus 50 ~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 50 LIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred EEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 99999999763 34578999999999887 111 1 2234 5699999975
No 295
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=2.2e-06 Score=85.44 Aligned_cols=105 Identities=21% Similarity=0.251 Sum_probs=73.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
...-.|.++|..++|||+++.++...+=...- .- --||-.... ++.. ++.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~--~s------------TiGIDFk~k--ti~l--------------~g~ 59 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSF--IS------------TIGIDFKIK--TIEL--------------DGK 59 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCc--cc------------eEEEEEEEE--EEEe--------------CCe
Confidence 45678999999999999999988433211110 00 012222222 2222 234
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
...+-+|||.|...|..-+...+|.|+|++||+|... .+. +.++.++|.||+|+.
T Consensus 60 ~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 60 KIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE 130 (207)
T ss_pred EEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc
Confidence 6788999999999999889999999999999999987 122 245667799999987
No 296
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.34 E-value=3.1e-06 Score=97.91 Aligned_cols=100 Identities=27% Similarity=0.411 Sum_probs=70.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
..||++|.+|+|||||.|+|.... .+ .|. + -|.|+......+.+. ++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~---q~--VgN-w----------pGvTVEkkeg~~~~~----------------~~~ 51 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN---QK--VGN-W----------PGVTVEKKEGKLKYK----------------GHE 51 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC---ce--ecC-C----------CCeeEEEEEEEEEec----------------Cce
Confidence 359999999999999999993322 22 231 1 267787777778775 778
Q ss_pred EEEEeCCCCcchH----HH-H-HHHh--hhcCeEEEEEecHH---------Hh-hhCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFS----SE-V-TAAL--RITDGALVVVDCIE---------AL-GERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~----~e-v-~~al--~~~D~avlVvda~~---------~~-~~~~~~ii~iNKiD~~ 151 (831)
+.++|.||.=++. .| + ...+ -..|.+|-||||+. .+ +.+.|.++++|++|..
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 9999999954431 11 1 2222 25799999999998 33 3456667799999976
No 297
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1.8e-06 Score=83.84 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=68.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-.+.|+|..|.|||+|+-++.... ... ..| -.|-+.-...-+.. +++..+
T Consensus 7 fKyIiiGd~gVGKSclllrf~~kr--F~~-------~hd-------~TiGvefg~r~~~i--------------d~k~IK 56 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKR--FQP-------VHD-------LTIGVEFGARMVTI--------------DGKQIK 56 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccC--ccc-------ccc-------ceeeeeeceeEEEE--------------cCceEE
Confidence 367799999999999998772221 110 000 00111111111111 345779
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--------Hh--------hhCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--------AL--------GERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~--------~~--------~~~~~~ii~iNKiD~~ 151 (831)
++|+||.||+.|..-+..-.|.+-|||||.|... .| .++...+++.||.|+.
T Consensus 57 lqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 57 LQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred EEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 9999999999999999999999999999999986 11 1223335588999987
No 298
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.32 E-value=4.4e-06 Score=87.33 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=22.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-..+.|+++|+.++||||++++|...
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCC
Confidence 35678999999999999999999765
No 299
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.28 E-value=2.1e-06 Score=87.48 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=40.1
Q ss_pred CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----H----h----h---hCCCcEEEEecCcch
Q 003316 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----A----L----G---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----~----~----~---~~~~~ii~iNKiD~~ 151 (831)
+..+.++|+||+|..+.. ....++.+|++|+|.|..+ . | . ...|.++|.||+|+.
T Consensus 63 ~~~v~l~iwDTaG~~~~~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 63 GVSVSLRLWDTFGDHDKD--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred CEEEEEEEEeCCCChhhh--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 346789999999987532 2346789999999999876 1 1 1 123446699999986
No 300
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.26 E-value=9e-07 Score=87.58 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=29.4
Q ss_pred CeeEEEEeCCCCcchH----HHHHHHhhhcCeEEEEEecHH
Q 003316 97 EYLINLIDSPGHVDFS----SEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 97 ~~~inliDTPGh~df~----~ev~~al~~~D~avlVvda~~ 133 (831)
...+.||||||..+.. .-+...+..+|.+|+|+++..
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~ 140 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQ 140 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTS
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCc
Confidence 3468999999986532 336677799999999999987
No 301
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.25 E-value=5.3e-06 Score=87.15 Aligned_cols=103 Identities=22% Similarity=0.315 Sum_probs=68.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
.|-+|+++|-+|||||||+++|....-. .|.-.+| |+.....+..|. ..
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpk-----Va~YaFT-----------TL~P~iG~v~yd---------------df 243 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPK-----VAHYAFT-----------TLRPHIGTVNYD---------------DF 243 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCc-----cccccee-----------eeccccceeecc---------------cc
Confidence 4678999999999999999999544322 2321222 444444455554 13
Q ss_pred eeEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH------------------Hhhh---CCCcEEEEecCc
Q 003316 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE------------------ALGE---RIRPVLTVNKMD 149 (831)
Q Consensus 98 ~~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~------------------~~~~---~~~~ii~iNKiD 149 (831)
..+.+-|-||.+. .-.+..+-+.-|+..++|||... .+.+ .+|.+||+||||
T Consensus 244 ~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD 323 (366)
T KOG1489|consen 244 SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKID 323 (366)
T ss_pred ceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccC
Confidence 3499999999653 22334455566799999999986 1111 245567999999
Q ss_pred ch
Q 003316 150 RC 151 (831)
Q Consensus 150 ~~ 151 (831)
.+
T Consensus 324 ~~ 325 (366)
T KOG1489|consen 324 LP 325 (366)
T ss_pred ch
Confidence 86
No 302
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=3e-06 Score=79.19 Aligned_cols=102 Identities=25% Similarity=0.280 Sum_probs=71.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-++.++|+.|+|||.|+.+++...= -|.. ...-|+..-+..+++ +++..+
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kf------------kDds--sHTiGveFgSrIinV----------------GgK~vK 59 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKF------------KDDS--SHTIGVEFGSRIVNV----------------GGKTVK 59 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhh------------cccc--cceeeeeecceeeee----------------cCcEEE
Confidence 4688999999999999999965421 1100 011233343444433 235778
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------------HhhhCCCcE-EEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------------ALGERIRPV-LTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------------~~~~~~~~i-i~iNKiD~~ 151 (831)
+.|+||.|...|..-+..-.|.+-||+||.|++. ++...+..| ++.||-|+.
T Consensus 60 LQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~ 127 (214)
T KOG0086|consen 60 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD 127 (214)
T ss_pred EEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC
Confidence 9999999999999999999999999999999987 111222223 388999986
No 303
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.23 E-value=2e-06 Score=83.31 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=70.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.....|.|+|..|+|||+|.+++.+.. . .+....||.....+=.+. .+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~k--F----------------~~qykaTIgadFltKev~------------Vd~~ 56 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKK--F----------------SQQYKATIGADFLTKEVQ------------VDDR 56 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHH--H----------------HHHhccccchhheeeEEE------------EcCe
Confidence 346789999999999999999996542 0 011112222222211111 1223
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh-------CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE-------RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~-------~~~~ii~iNKiD~~ 151 (831)
...+-|+||.|.+.|..--..-.|.+|++++|.|... .+.. .-|.||+.||+|..
T Consensus 57 ~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 57 SVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred EEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 5567899999999998877778899999999988775 2221 23457799999987
No 304
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.18 E-value=8.6e-06 Score=69.49 Aligned_cols=77 Identities=27% Similarity=0.270 Sum_probs=57.8
Q ss_pred EEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEec
Q 003316 365 MLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG 444 (831)
Q Consensus 365 ~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~g 444 (831)
.++|+++..++..|. ++++||++|+|++|+.+++...+ . ....+|.+|+..+ .+++++.|||++++.+
T Consensus 2 ~~~v~~~~~~~~~g~-v~~~rv~~G~l~~g~~v~~~~~~---~----~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~ 69 (83)
T cd01342 2 RALVFKVFKDKGRGT-VATGRVESGTLKKGDKVRVGPGG---G----GVKGKVKSLKRFK----GEVDEAVAGDIVGIVL 69 (83)
T ss_pred eeEEEEEEEeCCceE-EEEEEEeeCEEecCCEEEEecCC---c----eeEEEEeEeEecC----ceeceecCCCEEEEEE
Confidence 567888877776565 99999999999999999986420 1 1136888888765 6788999999999987
Q ss_pred cccccccce
Q 003316 445 LDQYITKNA 453 (831)
Q Consensus 445 l~~~~~~tg 453 (831)
.+....++|
T Consensus 70 ~~~~~~~~g 78 (83)
T cd01342 70 KDKDDIKIG 78 (83)
T ss_pred ccccccCCC
Confidence 654222555
No 305
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.16 E-value=1.7e-05 Score=87.11 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=28.3
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 8 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 8 ~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-.+++...+..-..||++|++++|||||++++...
T Consensus 6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhh
Confidence 34555666666678999999999999999999766
No 306
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=4.1e-06 Score=81.84 Aligned_cols=99 Identities=23% Similarity=0.238 Sum_probs=71.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
.-..|.++|--+|||||+...| ..|.+... -=|+-...-.+.|. +
T Consensus 16 ~e~~IlmlGLD~AGKTTILykL--k~~E~vtt-----------------vPTiGfnVE~v~yk----------------n 60 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKL--KLGEIVTT-----------------VPTIGFNVETVEYK----------------N 60 (181)
T ss_pred ceEEEEEEeccCCCceeeeEee--ccCCcccC-----------------CCccccceeEEEEc----------------c
Confidence 3457889999999999998877 22222110 01333344455553 8
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCc-EEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRP-VLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~-ii~iNKiD~~ 151 (831)
..++++|.-|+..+..-...-.+..+++|+|||+++ .+.+ +..| +++.||.|.+
T Consensus 61 ~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 61 ISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred eEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 899999999998888888888899999999999998 1111 2444 4599999998
No 307
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.13 E-value=1.4e-05 Score=87.43 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=36.6
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEe-cHH----HhhhCC---CcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVD-CIE----ALGERI---RPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvd-a~~----~~~~~~---~~ii~iNKiD~~ 151 (831)
.++.+.||||+|...- ++. ....||.+++|++ +.. ....+. .-++|+||+|+.
T Consensus 147 ~g~d~viieT~Gv~qs--~~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 147 AGYDVILVETVGVGQS--ETA-VAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGD 207 (332)
T ss_pred cCCCEEEEECCCCccc--hhH-HHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhccc
Confidence 4689999999998733 222 4678999999986 222 222211 237899999987
No 308
>PTZ00258 GTP-binding protein; Provisional
Probab=98.13 E-value=8.1e-06 Score=90.92 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=61.6
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechh-hhhccc
Q 003316 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYR 90 (831)
Q Consensus 12 ~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~-~~~~~~ 90 (831)
+.+.+.+-..|+|+|.+|+|||||+++|.... .......+ .|+......+.++.... .+....
T Consensus 14 ~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pf---------------tTi~p~~g~v~~~d~r~~~l~~~~ 77 (390)
T PTZ00258 14 LLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPF---------------CTIDPNTARVNVPDERFDWLCKHF 77 (390)
T ss_pred hhccCCCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCC---------------CcccceEEEEecccchhhHHHHHc
Confidence 34445555689999999999999999993332 22111122 23333333333321000 000000
Q ss_pred cccCCCCeeEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecH
Q 003316 91 GERQGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCI 132 (831)
Q Consensus 91 ~~~~~~~~~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~ 132 (831)
........++.++||||... ........++.+|++++|||+.
T Consensus 78 ~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 78 KPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 01111244699999999653 4446778899999999999985
No 309
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.03 E-value=5.4e-05 Score=78.24 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=59.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|.++|..|+||||+.|.||...-.-... + ....|.........+ .+..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~--~------------~~~~t~~~~~~~~~~----------------~g~~ 50 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGS--S------------AKSVTQECQKYSGEV----------------DGRQ 50 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--T--T------------TSS--SS-EEEEEEE----------------TTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeecc--c------------cCCcccccceeeeee----------------cceE
Confidence 479999999999999999997654322221 0 011222222222233 3789
Q ss_pred EEEEeCCCCcch-------HHHHHHHhh----hcCeEEEEEecHH----------Hhhh------CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDF-------SSEVTAALR----ITDGALVVVDCIE----------ALGE------RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df-------~~ev~~al~----~~D~avlVvda~~----------~~~~------~~~~ii~iNKiD~~ 151 (831)
+++|||||.-|- ..++..++. ..+++|+|+.... .+.+ ....+|+++..|..
T Consensus 51 v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~ 129 (212)
T PF04548_consen 51 VTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHADEL 129 (212)
T ss_dssp EEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG
T ss_pred EEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccc
Confidence 999999997552 334444443 4789999999875 1111 12346678888866
No 310
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.01 E-value=1.2e-05 Score=85.78 Aligned_cols=96 Identities=22% Similarity=0.222 Sum_probs=54.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechh-hhhccccccCCCCeeE
Q 003316 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYRGERQGNEYLI 100 (831)
Q Consensus 22 I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i 100 (831)
|||+|.+++|||||+++|....-.+.. .. +.|+......+.+..... .+.............+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n-~p---------------ftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i 64 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAAN-YP---------------FCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATI 64 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcccc-cc---------------ccchhceeeeEEeccchhhhHHHHhCCceeeeeEE
Confidence 689999999999999999543321111 01 223333333333321000 0000000000112369
Q ss_pred EEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH
Q 003316 101 NLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 101 nliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~ 133 (831)
.++||||..+ +.......++.+|++++|||+.+
T Consensus 65 ~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 65 EFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 9999999653 44456778899999999999853
No 311
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.01 E-value=7.4e-06 Score=85.94 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=31.4
Q ss_pred eEEEEeCCCCcchHHHH------HHHhh--hcCeEEEEEecHH-----------------HhhhCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEV------TAALR--ITDGALVVVDCIE-----------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev------~~al~--~~D~avlVvda~~-----------------~~~~~~~~ii~iNKiD~~ 151 (831)
.+.|+||||...|..-. ...+. ..=++|+++|+.- .++...|.|.|+||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 78999999998875432 22222 2347899999986 223456667799999998
No 312
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=2e-05 Score=78.45 Aligned_cols=103 Identities=21% Similarity=0.264 Sum_probs=70.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.-.|.++|..+.|||-|..++....=.+... . --|+.+.+.. +. .+++..
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~Sk--s------------TIGvef~t~t--~~--------------vd~k~v 63 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESK--S------------TIGVEFATRT--VN--------------VDGKTV 63 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccc--c------------ceeEEEEeec--ee--------------ecCcEE
Confidence 4569999999999999999984432222110 0 0122222211 11 234577
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh----CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~----~~~~ii~iNKiD~~ 151 (831)
+..|+||.|..+|..-+.+-.|.+-||++|.|.+. .++. +.+.++|.||.|+-
T Consensus 64 kaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 64 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred EEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh
Confidence 88999999999999777777899999999999986 1222 23345599999987
No 313
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.00 E-value=1.1e-05 Score=75.27 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=69.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
.+.++|--++|||||++.. .+|-..+. .+ ..+|.-+. .+ ..++..+
T Consensus 22 el~lvGLq~sGKtt~Vn~i--a~g~~~ed-mi-----------ptvGfnmr------k~--------------tkgnvti 67 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVI--ARGQYLED-MI-----------PTVGFNMR------KV--------------TKGNVTI 67 (186)
T ss_pred eEEEEeeccCCcceEEEEE--eeccchhh-hc-----------ccccceeE------Ee--------------ccCceEE
Confidence 4789999999999999876 22111110 11 11232221 11 1246788
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcchhhccCC
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRCFLELQV 157 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~~~~~~~ 157 (831)
-++|-||.+.|.....+--|.+|+++.||||.+ .+. .+.|..+..||+|++ ++
T Consensus 68 klwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~----~A 137 (186)
T KOG0075|consen 68 KLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLP----GA 137 (186)
T ss_pred EEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCc----cc
Confidence 999999999999999999999999999999998 111 134555689999999 76
No 314
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.99 E-value=3.5e-05 Score=82.81 Aligned_cols=112 Identities=19% Similarity=0.261 Sum_probs=58.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-||-++|..|.|||||++.|+......... ..+.......+..++......+.- ++-...
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~e--------------~~~~l~ 64 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDS------SIPPPSASISRTLEIEERTVELEE--------------NGVKLN 64 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEE--------------TCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccc------cccccccccccccceeeEEEEecc--------------CCcceE
Confidence 489999999999999999996653322210 001111122233344433332221 123568
Q ss_pred EEEEeCCCCcchH-------------HH-----HHHHh---------hhcCeEEEEEecHH------------HhhhCCC
Q 003316 100 INLIDSPGHVDFS-------------SE-----VTAAL---------RITDGALVVVDCIE------------ALGERIR 140 (831)
Q Consensus 100 inliDTPGh~df~-------------~e-----v~~al---------~~~D~avlVvda~~------------~~~~~~~ 140 (831)
+++|||||+.|.. .+ +..-. ...|++|..|+++. .+...+.
T Consensus 65 LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~vN 144 (281)
T PF00735_consen 65 LTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKRVN 144 (281)
T ss_dssp EEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTSE
T ss_pred EEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccccc
Confidence 9999999976521 11 11111 13689999999764 2333444
Q ss_pred cEEEEecCcch
Q 003316 141 PVLTVNKMDRC 151 (831)
Q Consensus 141 ~ii~iNKiD~~ 151 (831)
.|=||.|.|..
T Consensus 145 vIPvIaKaD~l 155 (281)
T PF00735_consen 145 VIPVIAKADTL 155 (281)
T ss_dssp EEEEESTGGGS
T ss_pred EEeEEeccccc
Confidence 34499999966
No 315
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.96 E-value=2.3e-05 Score=86.30 Aligned_cols=98 Identities=21% Similarity=0.214 Sum_probs=56.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechh-hhhccccccCCCCe
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYRGERQGNEY 98 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 98 (831)
..|+|+|.+++|||||+++|....-.+ .... +.|+......+.+..... .+............
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v-~nyp---------------ftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a 66 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEA-ANYP---------------FCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPA 66 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCee-cccc---------------cccccceEEEEEeccccchhhHHhcCCccccCc
Confidence 369999999999999999995443111 1101 223333322333321000 00000000111234
Q ss_pred eEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH
Q 003316 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 99 ~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~ 133 (831)
.+.|+||||..+ +.......++.+|++++|||+.+
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 699999999653 34457778899999999999853
No 316
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=4.3e-05 Score=73.00 Aligned_cols=105 Identities=18% Similarity=0.178 Sum_probs=70.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
++.-.+.++|--|||||||+..| .... .|. .. -|.+.+.-.+.. .
T Consensus 18 kK~gKllFlGLDNAGKTTLLHML-KdDr------l~q--hv----------PTlHPTSE~l~I----------------g 62 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHML-KDDR------LGQ--HV----------PTLHPTSEELSI----------------G 62 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHH-cccc------ccc--cC----------CCcCCChHHhee----------------c
Confidence 44567889999999999999877 2111 110 00 011111111111 3
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------------Hh--hhCCCcEEEEecCcchhhccCCCH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------------AL--GERIRPVLTVNKMDRCFLELQVDG 159 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------------~~--~~~~~~ii~iNKiD~~~~~~~~~~ 159 (831)
+..++-+|--||..=..-....+..+|++|++||+.+ .. ..+.|++|..||+|++ ++..
T Consensus 63 ~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p----~a~s 138 (193)
T KOG0077|consen 63 GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIP----YAAS 138 (193)
T ss_pred CceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCC----Cccc
Confidence 6788999999998766666677789999999999997 11 1356778899999999 7763
Q ss_pred H
Q 003316 160 E 160 (831)
Q Consensus 160 ~ 160 (831)
+
T Consensus 139 e 139 (193)
T KOG0077|consen 139 E 139 (193)
T ss_pred H
Confidence 3
No 317
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.94 E-value=3.1e-06 Score=79.59 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=63.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-.|+++|..-.|||+|+=+..... .. +.+- .|++.+..+-.. +.++....
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~Enk--Fn----------~kHl------sTlQASF~~kk~------------n~ed~ra~ 63 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENK--FN----------CKHL------STLQASFQNKKV------------NVEDCRAD 63 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhh--cc----------hhhH------HHHHHHHhhccc------------ccccceee
Confidence 368899999999999997664321 11 1000 122221111111 12234567
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh--hCC--CcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG--ERI--RPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~--~~~--~~ii~iNKiD~~ 151 (831)
++|+||.|...|..-=---.|.+|||+||.|.++ .++ .++ -.+||-||+|+.
T Consensus 64 L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 64 LHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred eeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 8999999999987544445589999999999997 111 122 335699999987
No 318
>PRK13768 GTPase; Provisional
Probab=97.88 E-value=3.5e-05 Score=81.86 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=37.5
Q ss_pred eeEEEEeCCCCcchHH---H---HHHHhhh--cCeEEEEEecHH-----------H------hhhCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSS---E---VTAALRI--TDGALVVVDCIE-----------A------LGERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~---e---v~~al~~--~D~avlVvda~~-----------~------~~~~~~~ii~iNKiD~~ 151 (831)
..+.+|||||+.++.. . ..+.+.. +|++++|+|+.. . ...+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 3689999999876432 1 2222333 899999999965 1 13345667799999987
No 319
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.87 E-value=7.9e-06 Score=79.70 Aligned_cols=33 Identities=15% Similarity=0.396 Sum_probs=25.2
Q ss_pred HHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.++....++ +.++++|+.|+|||||+|+|+..
T Consensus 26 ~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 26 IEELKELLKG-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 3333333334 78999999999999999999765
No 320
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.86 E-value=3e-05 Score=78.91 Aligned_cols=102 Identities=23% Similarity=0.317 Sum_probs=69.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
-.+|+++|..|.|||+|+-++++..=. + .+..+.++...+-+++ ++...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~------~--~y~ptied~y~k~~~v-----------------------~~~~~ 51 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV------E--DYDPTIEDSYRKELTV-----------------------DGEVC 51 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc------c--ccCCCccccceEEEEE-----------------------CCEEE
Confidence 357999999999999999888443210 0 0111111111111111 23466
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
.+.|+||+|..+|...-...++.+||-++|.+.++ .+. ...|.++|.||.|+.
T Consensus 52 ~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~ 121 (196)
T KOG0395|consen 52 MLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE 121 (196)
T ss_pred EEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch
Confidence 78899999999999999999999999999999987 111 123556699999988
No 321
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.85 E-value=4.3e-05 Score=78.66 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=25.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
..+++|+++|+.|+|||||+++|+...+
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5699999999999999999999998744
No 322
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.82 E-value=0.00019 Score=83.34 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=61.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|.+|+|||||+|+|+.......... ..+.|. ...+...+ .+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~--------------~~~TTr-~~ei~~~i----------------dG~ 166 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAF--------------GMGTTS-VQEIEGLV----------------QGV 166 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCC--------------CCCceE-EEEEEEEE----------------CCc
Confidence 46899999999999999999976643322210 011111 11111222 267
Q ss_pred eEEEEeCCCCcchH------HHHHH----Hhh--hcCeEEEEEecHH------------Hhhh------CCCcEEEEecC
Q 003316 99 LINLIDSPGHVDFS------SEVTA----ALR--ITDGALVVVDCIE------------ALGE------RIRPVLTVNKM 148 (831)
Q Consensus 99 ~inliDTPGh~df~------~ev~~----al~--~~D~avlVvda~~------------~~~~------~~~~ii~iNKi 148 (831)
.+++|||||..+.. .++.. .+. .+|++|+|+.... .+.+ ....||+++..
T Consensus 167 ~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThg 246 (763)
T TIGR00993 167 KIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHA 246 (763)
T ss_pred eEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCC
Confidence 89999999987642 23222 333 3688888765321 1111 13557799999
Q ss_pred cch
Q 003316 149 DRC 151 (831)
Q Consensus 149 D~~ 151 (831)
|..
T Consensus 247 D~l 249 (763)
T TIGR00993 247 ASA 249 (763)
T ss_pred ccC
Confidence 976
No 323
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.82 E-value=5.9e-05 Score=70.44 Aligned_cols=100 Identities=25% Similarity=0.301 Sum_probs=68.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeEE
Q 003316 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLIN 101 (831)
Q Consensus 22 I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (831)
.+|+|..+.|||+|+-++... ..+ |+-..+ |-++...-++.. .+...++.
T Consensus 11 llIigDsgVGKssLl~rF~dd--tFs----~sYitT----------iGvDfkirTv~i--------------~G~~VkLq 60 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADD--TFS----GSYITT----------IGVDFKIRTVDI--------------NGDRVKLQ 60 (198)
T ss_pred HHeecCCcccHHHHHHHHhhc--ccc----cceEEE----------eeeeEEEEEeec--------------CCcEEEEE
Confidence 468999999999999877332 221 210000 111111112222 23467899
Q ss_pred EEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------Hhhh------CCCcEEEEecCcch
Q 003316 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------ALGE------RIRPVLTVNKMDRC 151 (831)
Q Consensus 102 liDTPGh~df~~ev~~al~~~D~avlVvda~~---------~~~~------~~~~ii~iNKiD~~ 151 (831)
|+||.|...|..-+..-.+..+++++|.|.+. .+.+ .+|-++|.||-|.+
T Consensus 61 IwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 61 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDP 125 (198)
T ss_pred EeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCc
Confidence 99999999999888888999999999999986 1221 24668899999987
No 324
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.81 E-value=6.7e-05 Score=81.79 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=37.0
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----Hhh---hCCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----~~~---~~~~~ii~iNKiD~~ 151 (831)
.++.+.||||||...-. ...+..+|.++++.+... ... ...+.++++||+|++
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~~~~l~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGIKAGLMEIADIYVVNKADGE 185 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHHHHHHhhhccEEEEEccccc
Confidence 47899999999965322 235778899988875442 111 234567899999988
No 325
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.78 E-value=7.9e-05 Score=82.26 Aligned_cols=106 Identities=17% Similarity=0.140 Sum_probs=52.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceee-eeceeEEEEeechhhhhccccccCCCC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITI-KSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
..||||+|..|+|||||+|+|..-.. . +.|. -..|.+- ......+.++ +-
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~---~-d~~a----------A~tGv~etT~~~~~Y~~p---------------~~ 85 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGH---E-DEGA----------APTGVVETTMEPTPYPHP---------------KF 85 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--T---T-STTS------------SSSHSCCTS-EEEE-S---------------S-
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC---C-CcCc----------CCCCCCcCCCCCeeCCCC---------------CC
Confidence 46999999999999999999932211 0 0110 1112110 0111222222 22
Q ss_pred eeEEEEeCCCCc--chHHHHH---HHhhhcCeEEEEEecHH---------HhhhCCCc-EEEEecCcchhh
Q 003316 98 YLINLIDSPGHV--DFSSEVT---AALRITDGALVVVDCIE---------ALGERIRP-VLTVNKMDRCFL 153 (831)
Q Consensus 98 ~~inliDTPGh~--df~~ev~---~al~~~D~avlVvda~~---------~~~~~~~~-ii~iNKiD~~~~ 153 (831)
-.+.++|.||.. +|..+-. -.+...|..|+|.+..- .+....++ .+|-+|+|..+.
T Consensus 86 pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~ 156 (376)
T PF05049_consen 86 PNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLY 156 (376)
T ss_dssp TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS--HHHHHHHHHHHHTT-EEEEEE--HHHHHH
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCCCchhhHHHHHHHHHcCCcEEEEEecccccHh
Confidence 358999999963 4433311 24667898777665442 34444555 559999998553
No 326
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.00013 Score=68.13 Aligned_cols=101 Identities=19% Similarity=0.264 Sum_probs=67.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
.+.|+|...+|||+++-+.+..+=.+ ..+ ..-||..+... + |. ..+..++
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~-----afv---------sTvGidFKvKT--v-yr-------------~~kRikl 72 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTS-----AFV---------STVGIDFKVKT--V-YR-------------SDKRIKL 72 (193)
T ss_pred eEEEEccCCccchhhhHHhhcccccc-----cee---------eeeeeeEEEeE--e-ee-------------cccEEEE
Confidence 78899999999999997763221110 000 01133333331 1 11 1134688
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----H-------h---h-hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----A-------L---G-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-----~-------~---~-~~~~~ii~iNKiD~~ 151 (831)
.++||.|.+.+..-+..-.|.++|.||+.|.+. + + . .+.+.|++.||.|+.
T Consensus 73 QiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd 139 (193)
T KOG0093|consen 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMD 139 (193)
T ss_pred EEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCc
Confidence 999999999988777788899999999999986 1 1 1 234556699999986
No 327
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00025 Score=65.81 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=67.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-.|..+|-.++||||+.-.|-.......-... |..+ -++.|. +..
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTv---------------GFnv----etVtyk----------------N~k 62 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTV---------------GFNV----ETVTYK----------------NVK 62 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCccccccc---------------ceeE----EEEEee----------------eeE
Confidence 34678899999999999888332211111111 2222 233443 789
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh----CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~----~~~~ii~iNKiD~~ 151 (831)
+|++|.-|......-...-.....+.|||+|+.+ ++.. ..+..|+.||-|++
T Consensus 63 fNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp 131 (180)
T KOG0071|consen 63 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLP 131 (180)
T ss_pred EeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccc
Confidence 9999999999988888888899999999999987 1111 23345599999999
No 328
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.76 E-value=0.00016 Score=67.19 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=72.3
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccccc
Q 003316 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (831)
Q Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (831)
..+.+-..|.++|--+|||||++..| .++ |-....+-.|..+ .++.+.
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL-----------~sE----D~~hltpT~GFn~----k~v~~~------------- 59 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQL-----------KSE----DPRHLTPTNGFNT----KKVEYD------------- 59 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHH-----------ccC----ChhhccccCCcce----EEEeec-------------
Confidence 34444456899999999999999999 221 1111122234433 334443
Q ss_pred CCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh-----CCCcEEEEecCcch
Q 003316 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE-----RIRPVLTVNKMDRC 151 (831)
Q Consensus 94 ~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~-----~~~~ii~iNKiD~~ 151 (831)
+..++|++|.-|......-...-....|+.|+|||+++ .+.+ .+|..||.||-|++
T Consensus 60 --g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 60 --GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred --CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence 46899999999988777777777788999999999887 1111 24556699999998
No 329
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.73 E-value=7.9e-05 Score=73.07 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i 46 (831)
-.+|+++|.+|+|||||+|+|+......
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~ 129 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCK 129 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCcee
Confidence 4579999999999999999997654433
No 330
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.71 E-value=0.00024 Score=76.02 Aligned_cols=98 Identities=23% Similarity=0.260 Sum_probs=62.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
+-.|+++|-+++|||||+.++....-.|.. -.+| |+....-.+... ...
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIad-----YpFT-----------TL~PnLGvV~~~---------------~~~ 207 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIAD-----YPFT-----------TLVPNLGVVRVD---------------GGE 207 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccC-----Cccc-----------cccCcccEEEec---------------CCC
Confidence 457899999999999999999444322221 1111 222222122211 255
Q ss_pred eEEEEeCCCCc-----------chHHHHHHHhhhcCeEEEEEecHH---------------Hhh------hCCCcEEEEe
Q 003316 99 LINLIDSPGHV-----------DFSSEVTAALRITDGALVVVDCIE---------------ALG------ERIRPVLTVN 146 (831)
Q Consensus 99 ~inliDTPGh~-----------df~~ev~~al~~~D~avlVvda~~---------------~~~------~~~~~ii~iN 146 (831)
.|.+-|-||.. +|...++ -|-..+.|||... .+. ..+|.+||+|
T Consensus 208 sfv~ADIPGLIEGAs~G~GLG~~FLrHIE----Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~N 283 (369)
T COG0536 208 SFVVADIPGLIEGASEGVGLGLRFLRHIE----RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLN 283 (369)
T ss_pred cEEEecCcccccccccCCCccHHHHHHHH----hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEe
Confidence 79999999964 4655544 5567899999885 111 1356678999
Q ss_pred cCcch
Q 003316 147 KMDRC 151 (831)
Q Consensus 147 KiD~~ 151 (831)
|||.+
T Consensus 284 KiD~~ 288 (369)
T COG0536 284 KIDLP 288 (369)
T ss_pred ccCCC
Confidence 99976
No 331
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.71 E-value=0.00011 Score=82.74 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=29.6
Q ss_pred CeeEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH
Q 003316 97 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 97 ~~~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~ 133 (831)
...+.++||||..+ ........++.||++++|||+..
T Consensus 71 ~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 71 FIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 35789999999643 34467788999999999999863
No 332
>PTZ00099 rab6; Provisional
Probab=97.70 E-value=0.0001 Score=73.88 Aligned_cols=56 Identities=30% Similarity=0.324 Sum_probs=45.2
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------HhhhC--CCc-EEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGER--IRP-VLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~~--~~~-ii~iNKiD~~ 151 (831)
....++|+||||+..|.......++.+|++|+|+|++. .+... ..| ++|.||+|+.
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 46789999999999999888889999999999999876 11111 233 5699999986
No 333
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.69 E-value=0.00031 Score=61.08 Aligned_cols=79 Identities=24% Similarity=0.326 Sum_probs=55.6
Q ss_pred CeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE
Q 003316 363 PLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 442 (831)
Q Consensus 363 pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai 442 (831)
||.+.|..++..+ .|. +..+||.+|++++||.|+++..+ . ..+|..|... ..++++|.|||.+++
T Consensus 1 p~r~~V~~v~~~~-~g~-vv~G~v~~G~i~~Gd~v~i~P~~----~-----~~~V~si~~~----~~~~~~a~aGd~v~~ 65 (83)
T cd03698 1 PFRLPISDKYKDQ-GGT-VVSGKVESGSIQKGDTLLVMPSK----E-----SVEVKSIYVD----DEEVDYAVAGENVRL 65 (83)
T ss_pred CeEEEEEeEEEcC-CCc-EEEEEEeeeEEeCCCEEEEeCCC----c-----EEEEEEEEEC----CeECCEECCCCEEEE
Confidence 4666666666545 564 88999999999999999987532 1 2578887643 477999999999985
Q ss_pred --eccccccccce-eee
Q 003316 443 --VGLDQYITKNA-TLT 456 (831)
Q Consensus 443 --~gl~~~~~~tg-Tl~ 456 (831)
.+++....+.| .|+
T Consensus 66 ~l~~~~~~~v~~G~vl~ 82 (83)
T cd03698 66 KLKGIDEEDISPGDVLC 82 (83)
T ss_pred EECCCCHHHCCCCCEEe
Confidence 45443223556 443
No 334
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.69 E-value=0.00012 Score=71.02 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=37.0
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH----Hhhh----CCCcEEEEecCc
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----ALGE----RIRPVLTVNKMD 149 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~----~~~~----~~~~ii~iNKiD 149 (831)
.++.+.||||||.. .....+++.||-+|+|+.... ++.+ ..--+++|||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhhhHhhhcCEEEEeCCC
Confidence 36889999999954 344569999999999987764 2211 123378999998
No 335
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.00031 Score=75.19 Aligned_cols=147 Identities=15% Similarity=0.213 Sum_probs=85.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCc-------eEEecCchhhheeceeeeeceeEEEEee----chhhhh
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-------VRMTDTRQDEAERGITIKSTGISLYYEM----TDAALK 87 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~-------~~~~D~~~~e~~rgiTi~~~~~~~~~~~----~~~~~~ 87 (831)
-.-|.++|....||||+++.|+...=. ....|. ..+|.-..++.--|.+..... ...|.. -+..++
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dyp--g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~-~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYP--GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDA-KKPFRGLNKFGNAFLN 134 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCC--ccccCCCCCcceeEEEEecCcccccCCceeeecC-CCchhhhhhhHHHHHH
Confidence 467899999999999999999865311 111221 223433444444443332210 000100 011222
Q ss_pred ccccccCCC--CeeEEEEeCCCCc-----------chHHHHHHHhhhcCeEEEEEecHH------------HhhhC-CCc
Q 003316 88 SYRGERQGN--EYLINLIDSPGHV-----------DFSSEVTAALRITDGALVVVDCIE------------ALGER-IRP 141 (831)
Q Consensus 88 ~~~~~~~~~--~~~inliDTPGh~-----------df~~ev~~al~~~D~avlVvda~~------------~~~~~-~~~ 141 (831)
...|..-.+ -..|+||||||.- ||.+-...-+..||.++|+.|+.. +++-+ -+.
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 333332222 2379999999952 688777777889999999999987 23322 356
Q ss_pred EEEEecCcchhhccCCCHHHHHHHHHHHHHHhh
Q 003316 142 VLTVNKMDRCFLELQVDGEEAYQTFQKVIENAN 174 (831)
Q Consensus 142 ii~iNKiD~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (831)
.||+||.|.+ ++++..+....++=.+.
T Consensus 215 RVVLNKADqV------dtqqLmRVyGALmWslg 241 (532)
T KOG1954|consen 215 RVVLNKADQV------DTQQLMRVYGALMWSLG 241 (532)
T ss_pred EEEecccccc------CHHHHHHHHHHHHHhhh
Confidence 7899999955 55555544444333333
No 336
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.66 E-value=0.00012 Score=80.04 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=29.1
Q ss_pred CeeEEEEeCCCCc----chH---HHHHHHhhhcCeEEEEEecHH
Q 003316 97 EYLINLIDSPGHV----DFS---SEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 97 ~~~inliDTPGh~----df~---~ev~~al~~~D~avlVvda~~ 133 (831)
...+.|+||||.. .+. ......+|.||++++|||+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4679999999973 233 346667999999999999864
No 337
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00017 Score=80.38 Aligned_cols=94 Identities=27% Similarity=0.328 Sum_probs=67.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-.++++|++|+|||||+.+|+..-. .+.-.+..--||+.++ +..+
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~t-------------k~ti~~i~GPiTvvsg----------------------K~RR 114 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRFT-------------KQTIDEIRGPITVVSG----------------------KTRR 114 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHHH-------------HhhhhccCCceEEeec----------------------ceeE
Confidence 3578999999999999999964421 1111111112444332 4779
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEE-EEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVL-TVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii-~iNKiD~~ 151 (831)
++++.|| .|+ ..++.....||.++|+||++- +...+.|.++ |++-+|+.
T Consensus 115 iTflEcp--~Dl-~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlf 176 (1077)
T COG5192 115 ITFLECP--SDL-HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLF 176 (1077)
T ss_pred EEEEeCh--HHH-HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccc
Confidence 9999999 454 467788899999999999985 2334567788 99999987
No 338
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.0001 Score=81.81 Aligned_cols=105 Identities=20% Similarity=0.185 Sum_probs=57.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCccc-ccCCceEEecCc---hhhhee------ceeeeeceeEEEEeechhhhhc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTR---QDEAER------GITIKSTGISLYYEMTDAALKS 88 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~-~~~g~~~~~D~~---~~e~~r------giTi~~~~~~~~~~~~~~~~~~ 88 (831)
-.+++++|+.|+||||++..|......... ...+ ...+|.. ..|+-+ |+.+..... ...+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~-lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~-------~~~l~~ 208 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVA-LLTTDSYRIGGHEQLRIFGKILGVPVHAVKD-------GGDLQL 208 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE-EEecccccccHHHHHHHHHHHcCCceEecCC-------cccHHH
Confidence 468999999999999999999754311100 0011 1223322 122222 332221110 000000
Q ss_pred cccccCCCCeeEEEEeCCCCc---chHHHHHHHhhhcCeE---EEEEecHH
Q 003316 89 YRGERQGNEYLINLIDSPGHV---DFSSEVTAALRITDGA---LVVVDCIE 133 (831)
Q Consensus 89 ~~~~~~~~~~~inliDTPGh~---df~~ev~~al~~~D~a---vlVvda~~ 133 (831)
.- ....++.+.||||||.. ++..+....+..++.. +||++++.
T Consensus 209 ~l--~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts 257 (374)
T PRK14722 209 AL--AELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATS 257 (374)
T ss_pred HH--HHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCcc
Confidence 00 01135689999999976 5566666666655544 99999986
No 339
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.60 E-value=0.00024 Score=69.83 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=35.9
Q ss_pred CeeEEEEeCCCCcchHHH--------HHHHhhhcCeEEEEEecHH---H------hhhC--CCcEEEEecCcc
Q 003316 97 EYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIE---A------LGER--IRPVLTVNKMDR 150 (831)
Q Consensus 97 ~~~inliDTPGh~df~~e--------v~~al~~~D~avlVvda~~---~------~~~~--~~~ii~iNKiD~ 150 (831)
.....+|||||..+-..- ...+...+|+++.|||+.. . +.+. .--+|++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEecccC
Confidence 457789999997642211 2234456899999999986 1 1111 123789999995
No 340
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.55 E-value=0.0005 Score=75.26 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=66.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEE--ecCch---------hhheeceeeeeceeEEEEeechhh--
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRM--TDTRQ---------DEAERGITIKSTGISLYYEMTDAA-- 85 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~--~D~~~---------~e~~rgiTi~~~~~~~~~~~~~~~-- 85 (831)
...|+++|+.|+||||++..|....... -+++.. .|... ....+|+.+... ....++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~----g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~----~~~~dpa~~v 185 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQ----GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ----KEGADPASVA 185 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc----CCeEEEEecCccchhhHHHHHHHHHHcCceEEEe----CCCCCHHHHH
Confidence 4689999999999999999996553211 122222 23210 112334332211 11101100
Q ss_pred hhccccccCCCCeeEEEEeCCCCcch----HHHHHHHhh--------hcCeEEEEEecHH-------Hhh--hCC-CcEE
Q 003316 86 LKSYRGERQGNEYLINLIDSPGHVDF----SSEVTAALR--------ITDGALVVVDCIE-------ALG--ERI-RPVL 143 (831)
Q Consensus 86 ~~~~~~~~~~~~~~inliDTPGh~df----~~ev~~al~--------~~D~avlVvda~~-------~~~--~~~-~~ii 143 (831)
..... .....++.+.||||||...+ ..|+....+ ..|..++|+||.. +.. +.. .--+
T Consensus 186 ~~~l~-~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~gi 264 (318)
T PRK10416 186 FDAIQ-AAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGI 264 (318)
T ss_pred HHHHH-HHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEE
Confidence 00000 01124678999999997543 344444333 3577899999996 111 122 3357
Q ss_pred EEecCcch
Q 003316 144 TVNKMDRC 151 (831)
Q Consensus 144 ~iNKiD~~ 151 (831)
++||+|..
T Consensus 265 IlTKlD~t 272 (318)
T PRK10416 265 ILTKLDGT 272 (318)
T ss_pred EEECCCCC
Confidence 99999954
No 341
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.54 E-value=0.00062 Score=73.71 Aligned_cols=113 Identities=22% Similarity=0.326 Sum_probs=65.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
--||-++|..|.||||+++.|+...-. .. .+ +-+..+.-...++.|......+.- ++-..
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~-~~--~~---~~~~~~~~~~~~~~i~~~~~~l~e--------------~~~~~ 82 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLV-DE--TE---IDDIRAEGTSPTLEIKITKAELEE--------------DGFHL 82 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhcc-CC--CC---ccCcccccCCcceEEEeeeeeeec--------------CCeEE
Confidence 468999999999999999999877211 11 00 111111113344445444333321 22355
Q ss_pred eEEEEeCCCCcchHHHH--------------HHHh-------h-------hcCeEEEEEecHH---------Hh---hhC
Q 003316 99 LINLIDSPGHVDFSSEV--------------TAAL-------R-------ITDGALVVVDCIE---------AL---GER 138 (831)
Q Consensus 99 ~inliDTPGh~df~~ev--------------~~al-------~-------~~D~avlVvda~~---------~~---~~~ 138 (831)
.+|+|||||..||.... ...| | -.++|+.-+-.+. ++ .+.
T Consensus 83 ~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~ 162 (373)
T COG5019 83 NLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR 162 (373)
T ss_pred EEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc
Confidence 79999999998863220 0111 1 2578888888665 22 223
Q ss_pred CCcEEEEecCcch
Q 003316 139 IRPVLTVNKMDRC 151 (831)
Q Consensus 139 ~~~ii~iNKiD~~ 151 (831)
+-.|=||-|.|..
T Consensus 163 vNlIPVI~KaD~l 175 (373)
T COG5019 163 VNLIPVIAKADTL 175 (373)
T ss_pred cCeeeeeeccccC
Confidence 3333399999966
No 342
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.53 E-value=0.00017 Score=71.93 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.+|+++|.+|+|||||+|+|+....
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~ 142 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRA 142 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccc
Confidence 5799999999999999999965443
No 343
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00079 Score=73.41 Aligned_cols=96 Identities=22% Similarity=0.312 Sum_probs=58.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhc----cccccCC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS----YRGERQG 95 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~----~~~~~~~ 95 (831)
..+||+|-+|+|||||+++|......+.. ..+...|-..|+ ..... ..+.. ..|+..-
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aN--------YPF~TIePN~Gi--------v~v~d--~rl~~L~~~~~c~~k~ 64 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIAN--------YPFCTIEPNVGV--------VYVPD--CRLDELAEIVKCPPKI 64 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccC--------CCcccccCCeeE--------EecCc--hHHHHHHHhcCCCCcE
Confidence 36999999999999999999554422111 111112222222 11111 11111 1223333
Q ss_pred CCeeEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH
Q 003316 96 NEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 96 ~~~~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~ 133 (831)
....+.++|.+|.+. +--+-..-+|.+|+++.|||+.+
T Consensus 65 ~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 65 RPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred EeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 355789999999763 34445677899999999999985
No 344
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.51 E-value=0.00066 Score=60.11 Aligned_cols=84 Identities=19% Similarity=0.294 Sum_probs=60.7
Q ss_pred CCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEE
Q 003316 361 EGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 440 (831)
Q Consensus 361 ~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIv 440 (831)
+.||.+.|..++.....|. +..+||.+|+++.||.|+++..+ . ..+|..|... ..++++|.|||.+
T Consensus 2 ~~p~r~~V~~vf~~~g~g~-vv~G~v~~G~i~~gd~v~i~P~~----~-----~~~V~sI~~~----~~~~~~a~aG~~v 67 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGT-VPVGRVETGVLKPGMVVTFAPAG----V-----TGEVKSVEMH----HEPLEEALPGDNV 67 (91)
T ss_pred CCCeEEEEEEEEEeCCceE-EEEEEEecceeecCCEEEECCCC----c-----EEEEEEEEEC----CcCcCEECCCCEE
Confidence 3578888888776555565 88999999999999999987532 1 2688888643 4568899999999
Q ss_pred EEe--ccccccccce-eeecC
Q 003316 441 AMV--GLDQYITKNA-TLTNE 458 (831)
Q Consensus 441 ai~--gl~~~~~~tg-Tl~~~ 458 (831)
++. +++....+.| .|+++
T Consensus 68 ~i~l~~i~~~~v~~G~vl~~~ 88 (91)
T cd03693 68 GFNVKNVSKKDIKRGDVAGDS 88 (91)
T ss_pred EEEECCCCHHHcCCcCEEccC
Confidence 875 4433334567 55554
No 345
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.51 E-value=0.00045 Score=74.03 Aligned_cols=125 Identities=19% Similarity=0.230 Sum_probs=66.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCC-ceEE--ecCc---hhh------heeceeeeeceeEEEEeechhh
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-DVRM--TDTR---QDE------AERGITIKSTGISLYYEMTDAA 85 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g-~~~~--~D~~---~~e------~~rgiTi~~~~~~~~~~~~~~~ 85 (831)
..+.|+++|+.|+||||++-.|..... + .| ++.. .|.. ..| ..+|+.+.... ...++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~--~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~----~~~dp~~ 141 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---K--QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQK----EGADPAA 141 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---h--cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCC----CCCCHHH
Confidence 357899999999999999998854431 1 12 1222 3321 112 22333221110 0000000
Q ss_pred -hhccccccCCCCeeEEEEeCCCCcchHHHHHH-------Hhh-----hcCeEEEEEecHH-------H--hhhCC-CcE
Q 003316 86 -LKSYRGERQGNEYLINLIDSPGHVDFSSEVTA-------ALR-----ITDGALVVVDCIE-------A--LGERI-RPV 142 (831)
Q Consensus 86 -~~~~~~~~~~~~~~inliDTPGh~df~~ev~~-------al~-----~~D~avlVvda~~-------~--~~~~~-~~i 142 (831)
....-......++.+.||||||.......... ... .+|..++|+|+.. + ..+.. .--
T Consensus 142 ~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g 221 (272)
T TIGR00064 142 VAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTG 221 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCE
Confidence 00000001124678999999998654333222 222 3899999999986 1 11222 335
Q ss_pred EEEecCcch
Q 003316 143 LTVNKMDRC 151 (831)
Q Consensus 143 i~iNKiD~~ 151 (831)
+++||+|-.
T Consensus 222 ~IlTKlDe~ 230 (272)
T TIGR00064 222 IILTKLDGT 230 (272)
T ss_pred EEEEccCCC
Confidence 799999964
No 346
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.50 E-value=0.00021 Score=69.89 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+..+++++|++++|||||+++|+....
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~ 125 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLK 125 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccc
Confidence 457899999999999999999976543
No 347
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.50 E-value=0.00048 Score=68.63 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=36.7
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHh------hhcCeEEEEEecHH---------Hhhh-CCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAAL------RITDGALVVVDCIE---------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al------~~~D~avlVvda~~---------~~~~-~~~~ii~iNKiD~~ 151 (831)
.++.+.+|||||...+..+....+ ...|++++|+|+.. .+.+ ...--+++||+|..
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~ 152 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGD 152 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCC
Confidence 356789999999864433332222 24899999999865 1211 22335689999976
No 348
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.49 E-value=0.0011 Score=69.00 Aligned_cols=91 Identities=21% Similarity=0.181 Sum_probs=56.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.++..|+|+|..++|||||+|+|+...... .+.+.. ...-+||-+-.... ..+.
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f--------~~~~~~-~~~T~gi~~~~~~~-----------------~~~~ 58 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGF--------DVMDTS-QQTTKGIWMWSVPF-----------------KLGK 58 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCe--------EecCCC-CCCccceEEEeccc-----------------cCCC
Confidence 567889999999999999999996652111 011110 11123443321110 0123
Q ss_pred CeeEEEEeCCCCcch------HHHHHHHhhh--cCeEEEEEecHH
Q 003316 97 EYLINLIDSPGHVDF------SSEVTAALRI--TDGALVVVDCIE 133 (831)
Q Consensus 97 ~~~inliDTPGh~df------~~ev~~al~~--~D~avlVvda~~ 133 (831)
+..+.++||||..+- ......++.. +|..|+.+++..
T Consensus 59 ~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 59 EHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 578999999997643 2334555555 999999988775
No 349
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.44 E-value=8.1e-05 Score=71.70 Aligned_cols=105 Identities=20% Similarity=0.274 Sum_probs=72.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
+....+.|+|..+.||+|++.+. ..|+..+..-. +.-.|+.. + .|-+ ...
T Consensus 18 e~aiK~vivGng~VGKssmiqry--CkgifTkdykk-tIgvdfle--r--qi~v-----------------------~~E 67 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRY--CKGIFTKDYKK-TIGVDFLE--R--QIKV-----------------------LIE 67 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHH--hcccccccccc-ccchhhhh--H--HHHh-----------------------hHH
Confidence 34567899999999999999977 44554442111 11122221 1 1111 112
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--------Hh-------hhCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--------AL-------GERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~--------~~-------~~~~~~ii~iNKiD~~ 151 (831)
+.++.++||.|...|..-+.+-.|.|.+.|||.+.++ .| .+..|.++|-||||++
T Consensus 68 dvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 68 DVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred HHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhh
Confidence 5567899999999999888888999999999999887 11 1345667799999987
No 350
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.44 E-value=0.002 Score=65.39 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-=||.++|..|.|||||++.|...
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s 69 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKS 69 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHH
Confidence 369999999999999999998543
No 351
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.41 E-value=0.00055 Score=77.24 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=37.3
Q ss_pred CCeeEEEEeCCCCcch----HHHHHHHhh--hcCeEEEEEecHH---------HhhhCCCc-EEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIE---------ALGERIRP-VLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df----~~ev~~al~--~~D~avlVvda~~---------~~~~~~~~-ii~iNKiD~~ 151 (831)
.++.+.||||||.... ..|+..-.+ ..|-.+||+||.- .+.+..++ -+++||+|-.
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECccCC
Confidence 3678999999997644 334333322 3578999999964 23333333 6799999964
No 352
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.41 E-value=0.00046 Score=71.30 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
++...|.++|..|+||||++.+|....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 445578899999999999999996543
No 353
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.00037 Score=77.04 Aligned_cols=129 Identities=15% Similarity=0.144 Sum_probs=65.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccc-cCCceEEecCc---hhhheeceeeeeceeEEEEeechhhhhc-ccccc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTR---QDEAERGITIKSTGISLYYEMTDAALKS-YRGER 93 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~-~~g~~~~~D~~---~~e~~rgiTi~~~~~~~~~~~~~~~~~~-~~~~~ 93 (831)
.+.|+++|+.|+||||++..|..... .+. ..+ ....|.. ..|+-+... ....+.+....++..+.. +..-.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVg-lI~aDt~RiaAvEQLk~ya-e~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVG-FITTDHSRIGTVQQLQDYV-KTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEE-EEecCCcchHHHHHHHHHh-hhcCCcEEecCCHHHHHHHHHHHH
Confidence 47899999999999999999954321 100 011 1123322 122211100 000111111111111111 11011
Q ss_pred CCCCeeEEEEeCCCCcch----HHHHHHHhh--hcCeEEEEEecHH-------Hh---hhCCCcEEEEecCcch
Q 003316 94 QGNEYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIE-------AL---GERIRPVLTVNKMDRC 151 (831)
Q Consensus 94 ~~~~~~inliDTPGh~df----~~ev~~al~--~~D~avlVvda~~-------~~---~~~~~~ii~iNKiD~~ 151 (831)
...++.+.||||||.... ..++...++ ..|..+||+||+- .+ .....--++++|+|-.
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLDET 390 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDET 390 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEcccCC
Confidence 112468999999997543 444444443 3577899999864 11 2212235799999965
No 354
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0014 Score=60.55 Aligned_cols=102 Identities=25% Similarity=0.253 Sum_probs=66.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCccc-ccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~-~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
|-.-.|+|..|.|||.|+-.+....=.-+- ...| .+-|. ..+ .. .+..
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtig-----------vefgt----rii--ev--------------sgqk 59 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG-----------VEFGT----RII--EV--------------SGQK 59 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccc-----------eecce----eEE--Ee--------------cCcE
Confidence 556679999999999999887433211000 0011 01111 111 11 1236
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------Hhh------hCCCcE-EEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------ALG------ERIRPV-LTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~~~------~~~~~i-i~iNKiD~~ 151 (831)
.++.|+||.|...|..-+..-.|.+-||++|.|.+. .+. .-+..| ++-||.|+.
T Consensus 60 iklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 60 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 688999999999999888888999999999999987 111 112223 488999986
No 355
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.00042 Score=66.93 Aligned_cols=114 Identities=16% Similarity=0.110 Sum_probs=72.0
Q ss_pred HHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHH-cCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhh
Q 003316 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA-AGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 87 (831)
Q Consensus 9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~-~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~ 87 (831)
+.++|.+. .--+|.|+|.-+|||||+++++=.. ++..... .+.+.. -|+.....++...
T Consensus 8 l~~~~~~K-e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l----------~~~ki~--~tvgLnig~i~v~------- 67 (197)
T KOG0076|consen 8 LYKYMFKK-EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGL----------NPSKIT--PTVGLNIGTIEVC------- 67 (197)
T ss_pred HHHHHhhh-hhhhheeeccccCCchhHHHHHHHHHHhhhcCC----------CHHHee--cccceeecceeec-------
Confidence 44555532 2347889999999999999998211 1111100 001100 1122222222221
Q ss_pred ccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------------HhhhCCCcEEEEecCcc
Q 003316 88 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------------ALGERIRPVLTVNKMDR 150 (831)
Q Consensus 88 ~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------------~~~~~~~~ii~iNKiD~ 150 (831)
...+++||--|.....+-...-...|+++++||||.+ ...++.|.++.+||-|+
T Consensus 68 ---------~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~ 138 (197)
T KOG0076|consen 68 ---------NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDL 138 (197)
T ss_pred ---------cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhh
Confidence 5588999999988777666677789999999999997 12245666779999999
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 139 q 139 (197)
T KOG0076|consen 139 Q 139 (197)
T ss_pred h
Confidence 8
No 356
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.37 E-value=0.00032 Score=73.04 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=74.1
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHc---CCc------cc--c-----cCCceEEecCchhhheeceee
Q 003316 7 EELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA---GII------AQ--E-----VAGDVRMTDTRQDEAERGITI 70 (831)
Q Consensus 7 ~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~---g~i------~~--~-----~~g~~~~~D~~~~e~~rgiTi 70 (831)
+-|+.+.....+-..|||-|++|+|||||+++|...- |.- +. . ..|+-..|. ......|+=|
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~--~~~~d~~vfI 94 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQ--ELSRDPGVFI 94 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCH--HHHTSTTEEE
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhc--CcCCCCCEEE
Confidence 4566677766677889999999999999999996542 110 00 0 011100010 0111112211
Q ss_pred eeceeEEEEeechhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----HhhhC---CCcE
Q 003316 71 KSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----ALGER---IRPV 142 (831)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----~~~~~---~~~i 142 (831)
.+....=....-.......-.-++.-++.+.||-|.|--.--.+ -...+|..++|+-... +++.+ ..=+
T Consensus 95 RS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaDi 171 (266)
T PF03308_consen 95 RSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIADI 171 (266)
T ss_dssp EEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-SE
T ss_pred eecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhccE
Confidence 11110000000000000000012224688999999996443322 2578999999986664 33333 2348
Q ss_pred EEEecCcchhhccCCCHHHHHHHHHHHHH
Q 003316 143 LTVNKMDRCFLELQVDGEEAYQTFQKVIE 171 (831)
Q Consensus 143 i~iNKiD~~~~~~~~~~~~~~~~l~~~~~ 171 (831)
+||||.|++ +++ .+++.++..+.
T Consensus 172 ~vVNKaD~~----gA~--~~~~~l~~~l~ 194 (266)
T PF03308_consen 172 FVVNKADRP----GAD--RTVRDLRSMLH 194 (266)
T ss_dssp EEEE--SHH----HHH--HHHHHHHHHHH
T ss_pred EEEeCCChH----HHH--HHHHHHHHHHh
Confidence 899999988 653 44555555544
No 357
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.36 E-value=0.00024 Score=72.29 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=63.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCch---hhheeceeeeeceeEEEEee---chh-hhhccccc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQ---DEAERGITIKSTGISLYYEM---TDA-ALKSYRGE 92 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~---~e~~rgiTi~~~~~~~~~~~---~~~-~~~~~~~~ 92 (831)
+.|+++|+.|+||||.+-.|-+....-.+ ..+ ...+|+.. .||-+...-... +.+.... ++. .+.+.-..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~-~v~-lis~D~~R~ga~eQL~~~a~~l~-vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGK-KVA-LISADTYRIGAVEQLKTYAEILG-VPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT---EE-EEEESTSSTHHHHHHHHHHHHHT-EEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccc-cce-eecCCCCCccHHHHHHHHHHHhc-cccchhhcchhhHHHHHHHHHH
Confidence 46899999999999999999655432211 111 12344321 122111100000 1111000 000 00000000
Q ss_pred cCCCCeeEEEEeCCCCcchHHH----HHHHhh--hcCeEEEEEecHH---------Hhhh-CCCcEEEEecCcch
Q 003316 93 RQGNEYLINLIDSPGHVDFSSE----VTAALR--ITDGALVVVDCIE---------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 93 ~~~~~~~inliDTPGh~df~~e----v~~al~--~~D~avlVvda~~---------~~~~-~~~~ii~iNKiD~~ 151 (831)
...+++.+.||||||......+ +..-++ ..+-.+||+|+.. ...+ ..+--++++|+|-.
T Consensus 79 ~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet 153 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDET 153 (196)
T ss_dssp HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSS
T ss_pred HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCC
Confidence 1123567999999997654433 222222 4678999999997 1112 23346789999965
No 358
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.32 E-value=0.00036 Score=70.67 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
-.+++++|.+|+|||||+|+|+...
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999998764
No 359
>PRK12288 GTPase RsgA; Reviewed
Probab=97.28 E-value=0.00038 Score=77.11 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHc
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.++|+|.+|+|||||+|+|+...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 47999999999999999997553
No 360
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.003 Score=73.08 Aligned_cols=133 Identities=19% Similarity=0.172 Sum_probs=75.8
Q ss_pred HHHhhccc-CCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc------------CCce--EEecCchhhheece-----
Q 003316 9 LRRIMDFK-HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV------------AGDV--RMTDTRQDEAERGI----- 68 (831)
Q Consensus 9 ~~~~~~~~-~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~------------~g~~--~~~D~~~~e~~rgi----- 68 (831)
+..+++.- ...-.|+|.|.+.+||||++|+||...-...... .|.. ..+|-.+ |..---
T Consensus 98 l~~i~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~-ek~d~~ti~~~ 176 (749)
T KOG0448|consen 98 LDAIDEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSE-EKIDMKTINQL 176 (749)
T ss_pred HHHHHHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCc-ccccHHHHhHH
Confidence 33344433 3456899999999999999999999864433210 1110 1112111 100000
Q ss_pred ---------eeeeceeEEEEeechhhhhccccccCCCCeeEEEEeCCCCc---chHHHHHHHhhhcCeEEEEEecHH---
Q 003316 69 ---------TIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHV---DFSSEVTAALRITDGALVVVDCIE--- 133 (831)
Q Consensus 69 ---------Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDTPGh~---df~~ev~~al~~~D~avlVvda~~--- 133 (831)
.-..+.+.+.|+... |..-.+ .+.+||.||.. .+...+-.-.-.+|..|+|+.|-.
T Consensus 177 ~haL~~~~~~~~~sLlrV~~p~~~-------csLLrn--DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt 247 (749)
T KOG0448|consen 177 AHALKPDKDLGAGSLLRVFWPDDK-------CSLLRN--DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT 247 (749)
T ss_pred HHhcCcccccCcceEEEEEecCcc-------chhhhc--cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH
Confidence 111223344444211 111112 68899999953 456666666678999999999987
Q ss_pred --------HhhhCCCcEE-EEecCcch
Q 003316 134 --------ALGERIRPVL-TVNKMDRC 151 (831)
Q Consensus 134 --------~~~~~~~~ii-~iNKiD~~ 151 (831)
...+.+|-|+ +.||+|..
T Consensus 248 ~sek~Ff~~vs~~KpniFIlnnkwDas 274 (749)
T KOG0448|consen 248 LSEKQFFHKVSEEKPNIFILNNKWDAS 274 (749)
T ss_pred HHHHHHHHHhhccCCcEEEEechhhhh
Confidence 1122345554 78899976
No 361
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.25 E-value=0.00056 Score=69.03 Aligned_cols=109 Identities=21% Similarity=0.240 Sum_probs=74.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
-|.|.++|..|+|||++-..+...-..-+ .+.-|-||+....++.|- ++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D---------------~~rlg~tidveHsh~Rfl---------------Gnl 53 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARD---------------TRRLGATIDVEHSHVRFL---------------GNL 53 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhh---------------hhccCCcceeeehhhhhh---------------hhh
Confidence 47899999999999998876643221111 122345666666666664 367
Q ss_pred eEEEEeCCCCcchHHHHHH-----HhhhcCeEEEEEecHH---------------HhhhCCC---cEEEEecCcchhhcc
Q 003316 99 LINLIDSPGHVDFSSEVTA-----ALRITDGALVVVDCIE---------------ALGERIR---PVLTVNKMDRCFLEL 155 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~-----al~~~D~avlVvda~~---------------~~~~~~~---~ii~iNKiD~~~~~~ 155 (831)
.+|++||-|...|...-.+ .++..++.+.|.|+.. ++.++-| ..+++.|||+.
T Consensus 54 ~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv---- 129 (295)
T KOG3886|consen 54 VLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV---- 129 (295)
T ss_pred eeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc----
Confidence 8999999999988766554 4567899999999886 2222322 24599999998
Q ss_pred CCCHHH
Q 003316 156 QVDGEE 161 (831)
Q Consensus 156 ~~~~~~ 161 (831)
..+..+
T Consensus 130 ~~d~r~ 135 (295)
T KOG3886|consen 130 QEDARE 135 (295)
T ss_pred ccchHH
Confidence 655333
No 362
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.24 E-value=0.00042 Score=66.67 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.++++|..|+|||||+++|+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999654
No 363
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0016 Score=71.07 Aligned_cols=111 Identities=18% Similarity=0.264 Sum_probs=63.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-|+-++|..|.|||||+|.|+...-.-.+ ..+....+..+..++....+.+. .++-...
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~-------~~~~~~~~~~~t~~i~~~~~~ie--------------e~g~~l~ 80 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNR-------EVPGASERIKETVEIESTKVEIE--------------ENGVKLN 80 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCc-------ccCCcccCccccceeeeeeeeec--------------CCCeEEe
Confidence 48999999999999999999776211110 11112222222333333322221 1233557
Q ss_pred EEEEeCCCCcchHHH------------------------HHH-Hhh--hcCeEEEEEecHH------------HhhhCCC
Q 003316 100 INLIDSPGHVDFSSE------------------------VTA-ALR--ITDGALVVVDCIE------------ALGERIR 140 (831)
Q Consensus 100 inliDTPGh~df~~e------------------------v~~-al~--~~D~avlVvda~~------------~~~~~~~ 140 (831)
+|+|||||..|+... +.+ ... -.++++.-|.... .+..++.
T Consensus 81 LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~vN 160 (366)
T KOG2655|consen 81 LTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKVN 160 (366)
T ss_pred eEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcccc
Confidence 899999998875321 111 111 3688888888665 2222333
Q ss_pred cEEEEecCcch
Q 003316 141 PVLTVNKMDRC 151 (831)
Q Consensus 141 ~ii~iNKiD~~ 151 (831)
.|=||-|.|..
T Consensus 161 iIPVI~KaD~l 171 (366)
T KOG2655|consen 161 LIPVIAKADTL 171 (366)
T ss_pred ccceeeccccC
Confidence 33399999965
No 364
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.00094 Score=76.60 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-.+|+|+|..|+||||++..|...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999998653
No 365
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.21 E-value=0.0005 Score=74.47 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
+.++++|+.|+|||||+++|+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 689999999999999999996543
No 366
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.20 E-value=0.0016 Score=61.56 Aligned_cols=105 Identities=20% Similarity=0.285 Sum_probs=70.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeece-eEEEEeechhhhhccccccCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
+.-.|.++|.-+.|||.+++.|+|-+..+.....- ||.-.. .++... .+.
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~p----------------TiEDiY~~svet~-------------rga 58 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHP----------------TIEDIYVASVETD-------------RGA 58 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCcccc----------------chhhheeEeeecC-------------CCh
Confidence 45678999999999999999999987766442111 121111 111111 122
Q ss_pred CeeEEEEeCCCCcchHHHHHHH-hhhcCeEEEEEecHH--------Hhh----h----C-CCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAA-LRITDGALVVVDCIE--------ALG----E----R-IRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~a-l~~~D~avlVvda~~--------~~~----~----~-~~~ii~iNKiD~~ 151 (831)
.-.+.|-||.|..+...|.-+. +..+|+-|||.|..+ .++ + . +|+++..||.|+.
T Consensus 59 rE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 59 REQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred hheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 3478899999999886676654 567899999999887 111 1 1 3445589999985
No 367
>PRK14974 cell division protein FtsY; Provisional
Probab=97.16 E-value=0.0012 Score=72.67 Aligned_cols=55 Identities=24% Similarity=0.256 Sum_probs=36.6
Q ss_pred CeeEEEEeCCCCcc----hHHHHHHHhh--hcCeEEEEEecHH---H---hh---hC-CCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIE---A---LG---ER-IRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~d----f~~ev~~al~--~~D~avlVvda~~---~---~~---~~-~~~ii~iNKiD~~ 151 (831)
++.+.||||||... +..++..-.+ ..|..++|+|+.. + .. +. ..--+++||+|..
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 56799999999764 3444333222 4689999999986 1 11 12 2346799999965
No 368
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.15 E-value=0.001 Score=65.08 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=24.6
Q ss_pred HHhhcccCCeeEEEEEeCCCCCHHHHHHHHHH
Q 003316 10 RRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 10 ~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~ 41 (831)
.+++.......++.++|..++|||||+++|+.
T Consensus 92 ~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 92 KELAKIDGKEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred HHHHhhcCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 33343334567789999999999999999963
No 369
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.00095 Score=65.46 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=66.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
++.++++|..+.||||..++.+ +|...+. ---|+....-.+.+. .+.+..
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~l--tgeFe~~----------------y~at~Gv~~~pl~f~------------tn~g~i 59 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHL--TGEFEKT----------------YPATLGVEVHPLLFD------------TNRGQI 59 (216)
T ss_pred eEEEEEecCCcccccchhhhhh--cccceec----------------ccCcceeEEeeeeee------------cccCcE
Confidence 7899999999999999999883 2222221 111222222222222 112357
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------------HhhhCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------------~~~~~~~~ii~iNKiD~~ 151 (831)
+++.+||.|...|.+---...-..-+|+++.|... ...++.|+++..||.|-.
T Consensus 60 rf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 60 RFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIK 127 (216)
T ss_pred EEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecc
Confidence 99999999998886544334446778999999985 223444555699999955
No 370
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.12 E-value=0.00079 Score=71.16 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.++++|+.|+|||||+|+|+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 47899999999999999999765
No 371
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.00057 Score=64.70 Aligned_cols=54 Identities=33% Similarity=0.303 Sum_probs=43.8
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------------HhhhCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------------~~~~~~~~ii~iNKiD~~ 151 (831)
.++.|+||.|.+.|..-+.+-.|.|-|-+++.|-+. +..++--+++.-||.|++
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~ 137 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLE 137 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchh
Confidence 356799999999999999999999999999999886 222332334599999988
No 372
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.08 E-value=0.0016 Score=70.19 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..+++++|.+|+|||||+|+|+..
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~ 141 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGK 141 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999644
No 373
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.08 E-value=0.0011 Score=75.43 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=36.5
Q ss_pred eeEEEEeCCCCcchHHHH------HHHhhhcCeEEEEEecHH---------HhhhCCCc-EEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEV------TAALRITDGALVVVDCIE---------ALGERIRP-VLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev------~~al~~~D~avlVvda~~---------~~~~~~~~-ii~iNKiD~~ 151 (831)
+.+.||||||......+. ..++..+|.+++|+|+.. ...+..+. -+++||+|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 478999999976654332 234556899999999875 11222333 4689999953
No 374
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.0011 Score=73.16 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.+.|+++|+.|+||||++..|...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999654
No 375
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.05 E-value=0.0017 Score=64.52 Aligned_cols=125 Identities=18% Similarity=0.136 Sum_probs=63.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccc--cCCceEEecCchhhhee--ce---eeeeceeEEEEeechhhh-hcc-
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAER--GI---TIKSTGISLYYEMTDAAL-KSY- 89 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~g~~~~~D~~~~e~~r--gi---Ti~~~~~~~~~~~~~~~~-~~~- 89 (831)
++.|++.|++|||||||+++++..-+---+. ..|+ .++..+.+...+ |. .+.++. .++.. .... ..+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D-i~t~~Da~~l~~~~g~~i~~v~TG~--~CH~d-a~m~~~ai~ 88 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGD-IYTKEDADRLRKLPGEPIIGVETGK--GCHLD-ASMNLEAIE 88 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEece-eechhhHHHHHhCCCCeeEEeccCC--ccCCc-HHHHHHHHH
Confidence 6899999999999999999987653211110 0111 122222222111 21 111110 11111 1100 000
Q ss_pred ccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcC-eEEEEEecHH---HhhhCCCc-----EEEEecCcch
Q 003316 90 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITD-GALVVVDCIE---ALGERIRP-----VLTVNKMDRC 151 (831)
Q Consensus 90 ~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D-~avlVvda~~---~~~~~~~~-----ii~iNKiD~~ 151 (831)
..........+.||-+-| ++..- .+-...| .-|+|||..+ .-+++.|. ++||||.|+.
T Consensus 89 ~l~~~~~~~Dll~iEs~G--NL~~~--~sp~L~d~~~v~VidvteGe~~P~K~gP~i~~aDllVInK~DLa 155 (202)
T COG0378 89 ELVLDFPDLDLLFIESVG--NLVCP--FSPDLGDHLRVVVIDVTEGEDIPRKGGPGIFKADLLVINKTDLA 155 (202)
T ss_pred HHhhcCCcCCEEEEecCc--ceecc--cCcchhhceEEEEEECCCCCCCcccCCCceeEeeEEEEehHHhH
Confidence 011122235788899998 32211 1223456 7899999998 33332333 6799999985
No 376
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.04 E-value=0.0053 Score=53.17 Aligned_cols=65 Identities=23% Similarity=0.236 Sum_probs=46.9
Q ss_pred CeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEE
Q 003316 363 PLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 442 (831)
Q Consensus 363 pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai 442 (831)
||.+.|..++.. .|. +..+||.+|++++||.|++...+ . ..+|..|... ..++++|.|||.+++
T Consensus 1 plr~~I~~v~~~--~g~-vv~G~v~~G~i~~G~~v~i~P~~----~-----~~~V~si~~~----~~~~~~a~aGd~v~l 64 (82)
T cd04089 1 PLRLPIIDKYKD--MGT-VVLGKVESGTIKKGDKLLVMPNK----T-----QVEVLSIYNE----DVEVRYARPGENVRL 64 (82)
T ss_pred CeEEEEEeEEEc--CCE-EEEEEEeeeEEecCCEEEEeCCC----c-----EEEEEEEEEC----CEECCEECCCCEEEE
Confidence 445555555432 254 88999999999999999986532 1 2578887642 367899999999987
Q ss_pred e
Q 003316 443 V 443 (831)
Q Consensus 443 ~ 443 (831)
.
T Consensus 65 ~ 65 (82)
T cd04089 65 R 65 (82)
T ss_pred E
Confidence 5
No 377
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.03 E-value=0.0014 Score=71.04 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
..+|+++|.+|+|||||+|+|+...
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~ 145 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKK 145 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999997543
No 378
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.03 E-value=0.0015 Score=65.00 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..+++++|..++|||||+++|+..
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGK 138 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999654
No 379
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.03 E-value=0.0022 Score=65.48 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=33.0
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--H-h---hhCCCc--EEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--A-L---GERIRP--VLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~--~-~---~~~~~~--ii~iNKiD~~ 151 (831)
.....+|.|-|-. ...... -..+|++|+|+|+.+ . . ...... ++++||+|+.
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~~~~qi~~ad~~~~~k~d~~ 150 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRKGGPGITRSDLLVINKIDLA 150 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhhhHhHhhhccEEEEEhhhcc
Confidence 3567889999932 111111 124799999999987 1 1 122333 7899999987
No 380
>PRK12289 GTPase RsgA; Reviewed
Probab=96.98 E-value=0.001 Score=73.84 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.++|+|+.|+|||||+|+|+....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 489999999999999999975543
No 381
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.98 E-value=0.0015 Score=73.09 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+++.++|.+|+|||||+|+|+....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~ 179 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNN 179 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcc
Confidence 7999999999999999999987643
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=96.96 E-value=0.0012 Score=73.82 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=27.6
Q ss_pred HHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 6 AEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 6 ~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.+.+.+.+.+...-+++.++|.+|+|||||+|+|+...
T Consensus 147 I~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 147 IDELLEAIEKYREGRDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhhc
Confidence 44444444332234689999999999999999998654
No 383
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.91 E-value=0.0015 Score=71.81 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=26.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g 52 (831)
..++++|-+|+|||||+|+|+....+.....+|
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG 165 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPG 165 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccceeeCCCCc
Confidence 459999999999999999998776655444444
No 384
>PRK10867 signal recognition particle protein; Provisional
Probab=96.89 E-value=0.0039 Score=70.84 Aligned_cols=56 Identities=27% Similarity=0.415 Sum_probs=35.6
Q ss_pred CCeeEEEEeCCCCcc----hHHHHHHHhh--hcCeEEEEEecHH---------HhhhCCCc-EEEEecCcch
Q 003316 96 NEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIE---------ALGERIRP-VLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~d----f~~ev~~al~--~~D~avlVvda~~---------~~~~~~~~-ii~iNKiD~~ 151 (831)
.++.+.||||||... ...++..-.+ ..|.+++|+|+.. ...+..+. -+++||+|-.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 467899999999543 3333222222 4688899999876 12223333 4689999943
No 385
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.89 E-value=0.0044 Score=67.80 Aligned_cols=148 Identities=21% Similarity=0.234 Sum_probs=80.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCC----cccccCCceEEe--cCchhhheeceeeeeceeEEEEeech-hhhhccccc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGI----IAQEVAGDVRMT--DTRQDEAERGITIKSTGISLYYEMTD-AALKSYRGE 92 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~----i~~~~~g~~~~~--D~~~~e~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~ 92 (831)
+...|-|=.|||||||+++||.+..- +--.+.|+.-.- +.....-+.-..+..+.+.+.....- ..+.....
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~- 80 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR- 80 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh-
Confidence 45668888999999999999988651 000123322111 11111111223344444433322110 11111112
Q ss_pred cCCCCeeEEEEeCCCCcc-------hHH-HHHHHhhhcCeEEEEEecHH----------HhhhCC--CcEEEEecCcchh
Q 003316 93 RQGNEYLINLIDSPGHVD-------FSS-EVTAALRITDGALVVVDCIE----------ALGERI--RPVLTVNKMDRCF 152 (831)
Q Consensus 93 ~~~~~~~inliDTPGh~d-------f~~-ev~~al~~~D~avlVvda~~----------~~~~~~--~~ii~iNKiD~~~ 152 (831)
..+ .....+|-|-|..+ |.. ...+..-..|++|-||||.. ...... -=+|++||.|+.
T Consensus 81 ~~~-~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK~Dlv- 158 (323)
T COG0523 81 RRD-RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNKTDLV- 158 (323)
T ss_pred ccC-CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEecccCC-
Confidence 111 25678999999654 222 23344456799999999998 111122 238899999988
Q ss_pred hccCCCHHHHHHHHHHHHHHhhhh
Q 003316 153 LELQVDGEEAYQTFQKVIENANVI 176 (831)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~ 176 (831)
.. ++ .+.++..+.++|..
T Consensus 159 ---~~--~~-l~~l~~~l~~lnp~ 176 (323)
T COG0523 159 ---DA--EE-LEALEARLRKLNPR 176 (323)
T ss_pred ---CH--HH-HHHHHHHHHHhCCC
Confidence 43 33 56677777776643
No 386
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=96.85 E-value=0.0018 Score=72.21 Aligned_cols=103 Identities=23% Similarity=0.238 Sum_probs=59.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+.|+++++|-+|.|||++.+.+....-.+.. --.|..+-.+ .+ .+.+
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqp-----------------YaFTTksL~v--GH-------------~dyk 213 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQP-----------------YAFTTKLLLV--GH-------------LDYK 213 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCC-----------------cccccchhhh--hh-------------hhhh
Confidence 45799999999999999988866221111110 0111111111 00 1112
Q ss_pred CeeEEEEeCCCCcch--------HHHHHHHhhhc-CeEEEEEecHH-----------------HhhhCCCcEEEEecCcc
Q 003316 97 EYLINLIDSPGHVDF--------SSEVTAALRIT-DGALVVVDCIE-----------------ALGERIRPVLTVNKMDR 150 (831)
Q Consensus 97 ~~~inliDTPGh~df--------~~ev~~al~~~-D~avlVvda~~-----------------~~~~~~~~ii~iNKiD~ 150 (831)
-.++-+|||||.-|= -...++||.-. -+++++.|-++ -+-.+++.|+|+||+|.
T Consensus 214 YlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~ 293 (620)
T KOG1490|consen 214 YLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA 293 (620)
T ss_pred eeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccc
Confidence 447889999996552 12233444322 35678899888 11124556779999998
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 294 m 294 (620)
T KOG1490|consen 294 M 294 (620)
T ss_pred c
Confidence 6
No 387
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.85 E-value=0.0015 Score=66.57 Aligned_cols=82 Identities=26% Similarity=0.332 Sum_probs=56.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-.|+++|-+..|||||+..|........ + --+ .|......-+.|+ +-.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA----~-yeF-----------TTLtcIpGvi~y~----------------ga~ 110 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAA----S-YEF-----------TTLTCIPGVIHYN----------------GAN 110 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhh----c-eee-----------eEEEeecceEEec----------------Cce
Confidence 4699999999999999988843322111 1 000 1333333334443 778
Q ss_pred EEEEeCCCCcch-------HHHHHHHhhhcCeEEEEEecHH
Q 003316 100 INLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 100 inliDTPGh~df-------~~ev~~al~~~D~avlVvda~~ 133 (831)
|.++|-||...= ..++++..|.||.++.|.||..
T Consensus 111 IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk 151 (364)
T KOG1486|consen 111 IQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATK 151 (364)
T ss_pred EEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCc
Confidence 999999997653 3457888899999999999997
No 388
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.0013 Score=61.57 Aligned_cols=108 Identities=20% Similarity=0.214 Sum_probs=70.8
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhh
Q 003316 8 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 87 (831)
Q Consensus 8 ~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~ 87 (831)
.++.+.+.. +--.|-++|-.|+||||+.=++ . .|++..+- -|+.-...++.|
T Consensus 8 ~f~~L~g~e-~e~rililgldGaGkttIlyrl--q--------vgevvttk---------Ptigfnve~v~y-------- 59 (182)
T KOG0072|consen 8 LFKALQGPE-REMRILILGLDGAGKTTILYRL--Q--------VGEVVTTK---------PTIGFNVETVPY-------- 59 (182)
T ss_pred HHHHhcCCc-cceEEEEeeccCCCeeEEEEEc--c--------cCcccccC---------CCCCcCcccccc--------
Confidence 344555533 3345778999999999987665 2 23211100 022222223333
Q ss_pred ccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh----CCCcEEEEecCcc
Q 003316 88 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE----RIRPVLTVNKMDR 150 (831)
Q Consensus 88 ~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~----~~~~ii~iNKiD~ 150 (831)
++-+++++|--|.-....-..+-....|.+|.|||+.+ ++.+ ....++|.||+|.
T Consensus 60 --------KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~ 131 (182)
T KOG0072|consen 60 --------KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDY 131 (182)
T ss_pred --------ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccc
Confidence 47789999999988888778888889999999999997 2322 2344569999998
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 132 ~ 132 (182)
T KOG0072|consen 132 S 132 (182)
T ss_pred h
Confidence 7
No 389
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.83 E-value=0.012 Score=58.85 Aligned_cols=54 Identities=26% Similarity=0.281 Sum_probs=40.5
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
..+.+.+|||||... ..+..++..+|.+++|+.... .+.+ +.+..+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 478999999997643 366788899999999998875 2232 33445699999865
No 390
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.0012 Score=74.46 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-..|+++|+.|+||||++..|...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988654
No 391
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.80 E-value=0.0035 Score=71.19 Aligned_cols=56 Identities=23% Similarity=0.436 Sum_probs=35.5
Q ss_pred CCeeEEEEeCCCCcchHHHHHHH------hhhcCeEEEEEecHH---------HhhhCCCc-EEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAA------LRITDGALVVVDCIE---------ALGERIRP-VLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~a------l~~~D~avlVvda~~---------~~~~~~~~-ii~iNKiD~~ 151 (831)
.++.+.||||||........... ....|.+++|+|+.. ...+..++ -+++||+|-.
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 45789999999964332222222 224789999999876 12223333 4689999943
No 392
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.80 E-value=0.0064 Score=65.17 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.++.-|.|+|.+|||||||+++|+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999876
No 393
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=96.75 E-value=0.0029 Score=67.11 Aligned_cols=84 Identities=23% Similarity=0.269 Sum_probs=53.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
...|+++|-.|||||||+++|. .+....+.+. ..++|. |.. +...+ ++.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT-~Aal~p~drL--FATLDp---------T~h----~a~Lp---------------sg~ 226 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALT-KAALYPNDRL--FATLDP---------TLH----SAHLP---------------SGN 226 (410)
T ss_pred CceEEEEeecCccHHHHHHHHH-hhhcCccchh--heeccc---------hhh----hccCC---------------CCc
Confidence 4689999999999999999996 3333332111 112221 111 11222 467
Q ss_pred eEEEEeCCCCcc-hHH-------HHHHHhhhcCeEEEEEecHH
Q 003316 99 LINLIDSPGHVD-FSS-------EVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 99 ~inliDTPGh~d-f~~-------ev~~al~~~D~avlVvda~~ 133 (831)
.+.+.||-|+.. +-. .+..-..-+|..+-|+|.+.
T Consensus 227 ~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiSh 269 (410)
T KOG0410|consen 227 FVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISH 269 (410)
T ss_pred EEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCC
Confidence 889999999642 222 23333457899999999986
No 394
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.72 E-value=0.0014 Score=69.86 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~ 41 (831)
+..+++|+.|.|||||+|+|+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCc
Confidence 3678999999999999999965
No 395
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.67 E-value=0.0057 Score=69.72 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=67.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCC--cccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGI--IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~--i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (831)
+.+| |+++|.-|+|||+|+=+|+...=. +.+ .++ -|||-....
T Consensus 8 kdVR-IvliGD~G~GKtSLImSL~~eef~~~VP~-------rl~--------~i~IPadvt------------------- 52 (625)
T KOG1707|consen 8 KDVR-IVLIGDEGVGKTSLIMSLLEEEFVDAVPR-------RLP--------RILIPADVT------------------- 52 (625)
T ss_pred cceE-EEEECCCCccHHHHHHHHHhhhccccccc-------cCC--------ccccCCccC-------------------
Confidence 3444 889999999999999999655321 111 111 134432111
Q ss_pred CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh------hCCCcEEEEecCcchh
Q 003316 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG------ERIRPVLTVNKMDRCF 152 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~------~~~~~ii~iNKiD~~~ 152 (831)
.......|+||+-..+-...+...++.||.+++|.+..+ .++ -+.|.|+|-||.|...
T Consensus 53 Pe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 53 PENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred cCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 123458999999877777778889999999999987665 111 1345566999999863
No 396
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=96.58 E-value=0.00055 Score=62.81 Aligned_cols=57 Identities=26% Similarity=0.303 Sum_probs=46.2
Q ss_pred CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--------H--------hhhCCCcEEEEecCcch
Q 003316 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--------A--------LGERIRPVLTVNKMDRC 151 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~--------~--------~~~~~~~ii~iNKiD~~ 151 (831)
++..++.++||.|...|.+-+.+-.|.+|+.+++.|... + .++.+...++-||.|+.
T Consensus 44 ~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 44 DKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred CcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 356788999999999999999999999999999999876 1 12234556789999974
No 397
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.0025 Score=71.49 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.|+++|+.|+||||++..|...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999753
No 398
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.55 E-value=0.01 Score=67.79 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=34.5
Q ss_pred CeeEEEEeCCCCcchH----HHHHHHhh---hcCeEEEEEecHH-------Hhhh--CCCc-EEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFS----SEVTAALR---ITDGALVVVDCIE-------ALGE--RIRP-VLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~----~ev~~al~---~~D~avlVvda~~-------~~~~--~~~~-ii~iNKiD~~ 151 (831)
++.+.||||||+..+. .++...+. .-+-..+|++++. .+.. ..++ -++++|+|-.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEeccccc
Confidence 5789999999986543 33333333 2236688899875 1221 2233 5799999964
No 399
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.51 E-value=0.027 Score=60.50 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=62.2
Q ss_pred HhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeec--hhhhhc
Q 003316 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMT--DAALKS 88 (831)
Q Consensus 11 ~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~--~~~~~~ 88 (831)
-+|.+..+...|||||-+++||||++++|....-. ++. ..+ .||+.....+...+. +..++-
T Consensus 12 ~~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~-----~~N---fPF--------~TIdPn~a~V~v~d~Rfd~l~~~ 75 (391)
T KOG1491|consen 12 VLLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAG-----AAN---FPF--------CTIDPNEARVEVPDSRFDLLCPI 75 (391)
T ss_pred ccccCCCCcceeeEeeCCCCchHHHHHHHhcCCCC-----ccC---CCc--------ceeccccceeecCchHHHHHHHh
Confidence 35676677789999999999999999999433211 111 001 123322222222110 001111
Q ss_pred cccccCCCCeeEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH
Q 003316 89 YRGERQGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 89 ~~~~~~~~~~~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~ 133 (831)
+. ......-.+++.|..|.+. +.-....-+|.+|+++-||++.+
T Consensus 76 Y~-~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 76 YG-PKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cC-CcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 11 1222345799999999653 33335567899999999999986
No 400
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.50 E-value=0.0073 Score=64.50 Aligned_cols=127 Identities=15% Similarity=0.101 Sum_probs=62.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCch---hhh--eeceeeeeceeEEEEeechhhhhcc-cccc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQ---DEA--ERGITIKSTGISLYYEMTDAALKSY-RGER 93 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~---~e~--~rgiTi~~~~~~~~~~~~~~~~~~~-~~~~ 93 (831)
..|+++|..|+||||++..|...... .....| ...+|... .++ .+.-.+. ..+....++..+... ..-.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~-~~~~v~-~i~~D~~ri~~~~ql~~~~~~~~---~~~~~~~~~~~l~~~l~~l~ 150 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG-KKKTVG-FITTDHSRIGTVQQLQDYVKTIG---FEVIAVRDEAAMTRALTYFK 150 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEE-EEecCCCCHHHHHHHHHHhhhcC---ceEEecCCHHHHHHHHHHHH
Confidence 68999999999999999988654210 000011 11223221 011 0000010 111110111111110 0001
Q ss_pred CCCCeeEEEEeCCCCcch----HHHHHHHhh--hcCeEEEEEecHH-------Hhh---hCCCcEEEEecCcch
Q 003316 94 QGNEYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIE-------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 94 ~~~~~~inliDTPGh~df----~~ev~~al~--~~D~avlVvda~~-------~~~---~~~~~ii~iNKiD~~ 151 (831)
...++.+.||||||.... ..++...++ ..|-.+||+||+. .+. .-..--++++|+|-.
T Consensus 151 ~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlDet 224 (270)
T PRK06731 151 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDET 224 (270)
T ss_pred hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeecCC
Confidence 123578999999997643 333333332 3466799999874 122 222335799999965
No 401
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.48 E-value=0.0059 Score=67.63 Aligned_cols=98 Identities=21% Similarity=0.187 Sum_probs=57.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC-CcccccCCceEEecCchhhheeceeeeeceeEEEEeech-hhhhccccccCCCC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRGERQGNE 97 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g-~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 97 (831)
.++||+|-+++|||||.++|..... .+.. + .+. |+......+.+++.. ..+....+......
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~-------y-pft--------Ti~p~~g~v~v~d~r~d~L~~~~~~~~~~~ 66 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAAN-------P-PFT--------TIEPNAGVVNPSDPRLDLLAIYIKPEKVPP 66 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCC-------C-CCC--------CCCCceeEEEechhHHHHHHHHhCCcCcCC
Confidence 4799999999999999999944432 1111 0 111 111111122222100 00000111112234
Q ss_pred eeEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH
Q 003316 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 98 ~~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~ 133 (831)
..+.++|.||... +......-+|.+|+.+.|||+.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 5789999999764 55567889999999999999864
No 402
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.47 E-value=0.018 Score=55.18 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=45.1
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhhh---CCCcEEEEecCcchhhccCCCHHHHH
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALGE---RIRPVLTVNKMDRCFLELQVDGEEAY 163 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~~---~~~~ii~iNKiD~~~~~~~~~~~~~~ 163 (831)
+.+.+||||+..+ .....++..+|.+++|++... .+.+ ..+..+++|+++.. ...++..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~-----~~~~~~~ 117 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP-----KEGKKVF 117 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH-----HHHHHHH
Confidence 6789999998654 445688999999999999886 1211 12345799999744 2234455
Q ss_pred HHHHHHHH
Q 003316 164 QTFQKVIE 171 (831)
Q Consensus 164 ~~l~~~~~ 171 (831)
+.|.+.++
T Consensus 118 ~~~~~~~~ 125 (139)
T cd02038 118 KRLSNVSN 125 (139)
T ss_pred HHHHHHHH
Confidence 55555444
No 403
>PRK00098 GTPase RsgA; Reviewed
Probab=96.47 E-value=0.0032 Score=68.54 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.++++|+.|+|||||+++|+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999644
No 404
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.45 E-value=0.0094 Score=63.12 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=29.4
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 7 EELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 7 ~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+-+..++...-+-..|||-|.+|+|||||++.|...
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHH
Confidence 445667777777778999999999999999999543
No 405
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.40 E-value=0.0022 Score=64.43 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=65.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
-+.+.|||...+|||.|+-.. .++.......- ++.|+. .+++... +++.+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~--t~~~fp~~yvP--TVFdny-------------s~~v~V~-------------dg~~v 53 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISY--TTNAFPEEYVP--TVFDNY-------------SANVTVD-------------DGKPV 53 (198)
T ss_pred eeEEEEECCCCcCceEEEEEe--ccCcCcccccC--eEEccc-------------eEEEEec-------------CCCEE
Confidence 357899999999999998544 44333221111 122211 1111110 24567
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hh---hhCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------AL---GERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~---~~~~~~ii~iNKiD~~ 151 (831)
.+.|+||.|..||..-..-+.+.+|..+++.+... .+ .-+.|.|+|.+|.|+-
T Consensus 54 ~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 54 ELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred EEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 89999999999997743357789999988776655 11 1235667799999976
No 406
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.39 E-value=0.0033 Score=63.00 Aligned_cols=73 Identities=22% Similarity=0.230 Sum_probs=42.5
Q ss_pred CeeEEEEeCCCCcchHHH-----HHHHhhhcCeEEEEEecHH---------Hhhh--CCCcEEEEecCcchhhccCCCHH
Q 003316 97 EYLINLIDSPGHVDFSSE-----VTAALRITDGALVVVDCIE---------ALGE--RIRPVLTVNKMDRCFLELQVDGE 160 (831)
Q Consensus 97 ~~~inliDTPGh~df~~e-----v~~al~~~D~avlVvda~~---------~~~~--~~~~ii~iNKiD~~~~~~~~~~~ 160 (831)
.....||=|.|..+...- .....-..+..|.|||+.. .+.. ..--++++||.|+. . .+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~----~--~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLV----S--DE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGH----H--HH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccccC----C--hh
Confidence 345678999996553322 2222345799999999944 2222 23348999999987 2 22
Q ss_pred HHHHHHHHHHHHhhh
Q 003316 161 EAYQTFQKVIENANV 175 (831)
Q Consensus 161 ~~~~~l~~~~~~~~~ 175 (831)
+..+++++.+.++|.
T Consensus 158 ~~i~~~~~~ir~lnp 172 (178)
T PF02492_consen 158 QKIERVREMIRELNP 172 (178)
T ss_dssp --HHHHHHHHHHH-T
T ss_pred hHHHHHHHHHHHHCC
Confidence 234567777776663
No 407
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.38 E-value=0.005 Score=61.52 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=21.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCcc
Q 003316 22 MSVIAHVDHGKSTLTDSLVAAAGIIA 47 (831)
Q Consensus 22 I~ivGh~~~GKTTL~~~ll~~~g~i~ 47 (831)
+-++|+.||||||.+..|....-.+.
T Consensus 6 ~lV~GpAgSGKSTyC~~~~~h~e~~g 31 (273)
T KOG1534|consen 6 QLVMGPAGSGKSTYCSSMYEHCETVG 31 (273)
T ss_pred EEEEccCCCCcchHHHHHHHHHHhhC
Confidence 46899999999999999977654443
No 408
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.37 E-value=0.0092 Score=67.50 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCc
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i 46 (831)
..+++|+|+|+.++|||||+++|....|..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 458999999999999999999998886655
No 409
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=96.36 E-value=0.017 Score=50.64 Aligned_cols=57 Identities=21% Similarity=0.383 Sum_probs=41.9
Q ss_pred CCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe
Q 003316 375 SDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 443 (831)
Q Consensus 375 ~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~ 443 (831)
+..|. +..+||.+|+++.||.|.+++.+. .. ..+|..|.. ...++++|.|||-+++.
T Consensus 12 ~g~G~-vv~G~v~~G~v~~gd~v~~~p~~~--~~-----~~~V~si~~----~~~~~~~a~~G~~v~l~ 68 (87)
T cd03697 12 PGRGT-VVTGRIERGTIKVGDEVEIVGFGE--TL-----KTTVTGIEM----FRKTLDEAEAGDNVGVL 68 (87)
T ss_pred CCcEE-EEEEEECCCCCccCCEEEEeCCCC--Cc-----eEEEEEEEE----CCcCCCEECCCCEEEEE
Confidence 34454 789999999999999999875321 11 257777753 24568899999999875
No 410
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.32 E-value=0.0072 Score=69.42 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-+.|+++|+.|+||||++..|...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 367999999999999999999643
No 411
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=96.30 E-value=0.027 Score=49.34 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=42.6
Q ss_pred CCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe
Q 003316 375 SDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 443 (831)
Q Consensus 375 ~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~ 443 (831)
+..|. +..+||.+|++++||.++++..+. + +....+|..|.. ...++++|.|||.+++.
T Consensus 12 ~g~Gt-Vv~G~v~~G~v~~g~~v~~~P~~~--g---~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~ 70 (87)
T cd03694 12 PGVGT-VVGGTVSKGVIRLGDTLLLGPDQD--G---SFRPVTVKSIHR----NRSPVRVVRAGQSASLA 70 (87)
T ss_pred CCcce-EEEEEEecCEEeCCCEEEECCCCC--C---CEeEEEEEEEEE----CCeECCEECCCCEEEEE
Confidence 34565 889999999999999999864310 1 011357777753 35678899999998874
No 412
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.18 E-value=0.036 Score=60.85 Aligned_cols=144 Identities=15% Similarity=0.206 Sum_probs=75.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCC----cccccCCceEEecCchhhhe--eceeeeeceeEEEEeechhh---hhc
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGI----IAQEVAGDVRMTDTRQDEAE--RGITIKSTGISLYYEMTDAA---LKS 88 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~----i~~~~~g~~~~~D~~~~e~~--rgiTi~~~~~~~~~~~~~~~---~~~ 88 (831)
++....|.|-.|||||||+++|+....- +-..+.|++ -.|..-.+.. .-.++..+.+.+.. .+.. +.+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v-~iD~~ll~~~~~~v~eL~~GCiCCs~--~~~l~~~l~~ 79 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEV-SVDDQLIGDRATQIKTLTNGCICCSR--SNELEDALLD 79 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCc-cccHHHHhCcCceEEEECCCEEEEcc--CchHHHHHHH
Confidence 5677889999999999999999975321 111124432 1222111110 11233333332221 1111 111
Q ss_pred cccc--cCCCCeeEEEEeCCCCcchHHHHHHHh---------hhcCeEEEEEecHH---Hh------hhC--CCcEEEEe
Q 003316 89 YRGE--RQGNEYLINLIDSPGHVDFSSEVTAAL---------RITDGALVVVDCIE---AL------GER--IRPVLTVN 146 (831)
Q Consensus 89 ~~~~--~~~~~~~inliDTPGh~df~~ev~~al---------~~~D~avlVvda~~---~~------~~~--~~~ii~iN 146 (831)
+... .+.......+|-|-|..+-. .+..++ -..|++|.|||+.. .+ ... .-=+|++|
T Consensus 80 l~~~~~~~~~~~d~IvIEttG~a~p~-~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Ivln 158 (318)
T PRK11537 80 LLDNLDKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_pred HHHHHhccCCCCCEEEEECCCccCHH-HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEEEe
Confidence 1111 00112456789999987743 233332 13589999999986 11 111 23388999
Q ss_pred cCcchhhccCCCHHHHHHHHHHHHHHhh
Q 003316 147 KMDRCFLELQVDGEEAYQTFQKVIENAN 174 (831)
Q Consensus 147 KiD~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (831)
|+|+. ... +.+.+.+..+|
T Consensus 159 K~Dl~----~~~-----~~~~~~l~~ln 177 (318)
T PRK11537 159 KTDVA----GEA-----EKLRERLARIN 177 (318)
T ss_pred ccccC----CHH-----HHHHHHHHHhC
Confidence 99987 421 34555555555
No 413
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.09 E-value=0.04 Score=54.70 Aligned_cols=51 Identities=27% Similarity=0.240 Sum_probs=37.6
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCc-EEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALGE-RIRP-VLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~-ii~iNKiD~~ 151 (831)
.+.+|||||..+. ....++..+|.+|+|++... .+.+ +.+. .+++|++|..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 6899999986554 46788999999999998876 2222 2233 4599999865
No 414
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=96.08 E-value=0.047 Score=55.58 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=93.6
Q ss_pred CCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeee
Q 003316 667 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEE 746 (831)
Q Consensus 667 g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~ 746 (831)
+..+.||.+.+.-.- .=...+.|-++.|=..|..+|+..|+..-+.|...++|.++-+.+|.+...|.+..++|++.
T Consensus 89 ~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T TIGR00257 89 GSDLGDIGAVVVRYF---GGILLGTGGLIKAYGKSVLEALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIKS 165 (204)
T ss_pred HCCCCcEEEEEEEec---CCcccCCchhHHHHHHHHHHHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEee
Confidence 667888887776321 11234555577888899999999999999999999999999999999999999999999988
Q ss_pred eccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeE
Q 003316 747 MQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQ 784 (831)
Q Consensus 747 ~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 784 (831)
+-.+ .+.++..+|..+.-.+...|..+|+|+..+.
T Consensus 166 ~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 166 NFSN---NVVLVEISGTKENLAFSEQLTEISLGQLILK 200 (204)
T ss_pred EecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 7743 5889999999988899999999999987553
No 415
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.00 E-value=0.0068 Score=62.36 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=55.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-.++++|-+..|||||+..|. |..+..-++. +.|...-.....|+ .-+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~---g~~s~vasye-------------fttl~~vpG~~~y~----------------gaK 107 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLT---GTFSEVAAYE-------------FTTLTTVPGVIRYK----------------GAK 107 (358)
T ss_pred eeeeEEecCccchhhhhhhhc---CCCCcccccc-------------ceeEEEecceEecc----------------ccc
Confidence 378999999999999999883 3332221221 11221112222332 668
Q ss_pred EEEEeCCCCcch-------HHHHHHHhhhcCeEEEEEecHH
Q 003316 100 INLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 100 inliDTPGh~df-------~~ev~~al~~~D~avlVvda~~ 133 (831)
+-|.|-||..+= ..+|++..|.|..+++|.|+..
T Consensus 108 iqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~k 148 (358)
T KOG1487|consen 108 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLK 148 (358)
T ss_pred eeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccC
Confidence 999999997653 3558888899999999999987
No 416
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=95.99 E-value=0.017 Score=60.33 Aligned_cols=101 Identities=22% Similarity=0.246 Sum_probs=58.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
-..++++|..|.|||+|++.++.....-.. ++. .-|-|.. +.... .+.
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t---~k~----------K~g~Tq~---in~f~----------------v~~ 183 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADT---SKS----------KNGKTQA---INHFH----------------VGK 183 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhhh---cCC----------CCcccee---eeeee----------------ccc
Confidence 356899999999999999999655322111 100 1122221 11111 256
Q ss_pred eEEEEeCCCC----------cchHHHHHHHh---hhcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 99 LINLIDSPGH----------VDFSSEVTAAL---RITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh----------~df~~ev~~al---~~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
.+.++|-||+ .|+..-+..-+ +..=.+.++||++. .+.+ ++|..+|+||||+.
T Consensus 184 ~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 184 SWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ 261 (320)
T ss_pred eEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhh
Confidence 7899999992 23332222222 12334566778775 2333 45667799999987
No 417
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.028 Score=63.15 Aligned_cols=129 Identities=18% Similarity=0.180 Sum_probs=64.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCC-c--eEEecCc---hhhheeceeeeeceeEEEEeechhhhhccccc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-D--VRMTDTR---QDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g-~--~~~~D~~---~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (831)
-++|+++|+.|+||||++-.|......-... .| + ....|.. ..|+-+...-.. .+.+........+...-
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~-~g~~V~lit~Dt~R~aa~eQL~~~a~~l-gvpv~~~~~~~~l~~~L-- 249 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDD-KSLNIKIITIDNYRIGAKKQIQTYGDIM-GIPVKAIESFKDLKEEI-- 249 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhcc-CCCeEEEEeccCccHHHHHHHHHHhhcC-CcceEeeCcHHHHHHHH--
Confidence 4689999999999999999886542211000 01 1 1123321 112211100000 01111111101111000
Q ss_pred cCCCCeeEEEEeCCCCcch----HHHHHHHhhhc--C-eEEEEEecHH-------HhhhC--C-CcEEEEecCcch
Q 003316 93 RQGNEYLINLIDSPGHVDF----SSEVTAALRIT--D-GALVVVDCIE-------ALGER--I-RPVLTVNKMDRC 151 (831)
Q Consensus 93 ~~~~~~~inliDTPGh~df----~~ev~~al~~~--D-~avlVvda~~-------~~~~~--~-~~ii~iNKiD~~ 151 (831)
....++.+.||||||..-. ..++...+..+ + -.+||+||+. .+... . .--++++|+|-.
T Consensus 250 ~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet 325 (388)
T PRK12723 250 TQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDET 325 (388)
T ss_pred HHhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCC
Confidence 0114678999999996432 23454444433 3 5789999986 22222 2 336799999954
No 418
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.91 E-value=0.007 Score=67.06 Aligned_cols=124 Identities=17% Similarity=0.264 Sum_probs=65.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCccc-ccCCceEEecCch---hhhee------ceeeeeceeEEEEeechhhhh
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTRQ---DEAER------GITIKSTGISLYYEMTDAALK 87 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~-~~~g~~~~~D~~~---~e~~r------giTi~~~~~~~~~~~~~~~~~ 87 (831)
+.|+|+++|++|+||||.+-.|-+......+ ...| ..++|+.- .||-+ |+.+... .++..+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVa-iITtDtYRIGA~EQLk~Ya~im~vp~~vv-------~~~~el~ 273 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVA-IITTDTYRIGAVEQLKTYADIMGVPLEVV-------YSPKELA 273 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceE-EEEeccchhhHHHHHHHHHHHhCCceEEe-------cCHHHHH
Confidence 3789999999999999999988655442211 1122 23444321 23221 2222111 1111110
Q ss_pred ccccccCCCCeeEEEEeCCCCcchH----HHHHHHhhhc--CeEEEEEecHH-------Hhh-hCCCc--EEEEecCcch
Q 003316 88 SYRGERQGNEYLINLIDSPGHVDFS----SEVTAALRIT--DGALVVVDCIE-------ALG-ERIRP--VLTVNKMDRC 151 (831)
Q Consensus 88 ~~~~~~~~~~~~inliDTPGh~df~----~ev~~al~~~--D~avlVvda~~-------~~~-~~~~~--ii~iNKiD~~ 151 (831)
..- ..-.++.+.||||.|+.-.. .++..-+..+ .-.-||++++. .+. .+.-+ -++++|+|-.
T Consensus 274 ~ai--~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET 351 (407)
T COG1419 274 EAI--EALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDET 351 (407)
T ss_pred HHH--HHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEccccc
Confidence 000 01135689999999976443 3333333333 34567888886 222 22222 4689999965
No 419
>PRK11568 hypothetical protein; Provisional
Probab=95.86 E-value=0.068 Score=54.43 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=93.5
Q ss_pred CCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeee
Q 003316 667 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEE 746 (831)
Q Consensus 667 g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~ 746 (831)
+..+.||.+.++-. . .=...+.|-++.|=..|.++|+.+|+..-..|...+.|+++-+.+|.+...|.+..+.|++.
T Consensus 89 ~~~l~nv~vVVtRY--F-GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T PRK11568 89 GSGVGEITAVVVRY--Y-GGILLGTGGLVKAYGGGVQQALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKIVNS 165 (204)
T ss_pred HCCCccEEEEEEEE--c-CCcccccchhHHHHHHHHHHHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEEEcc
Confidence 67788888877632 1 11234555577888899999999999999999999999999999999999999999999988
Q ss_pred eccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeE
Q 003316 747 MQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQ 784 (831)
Q Consensus 747 ~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 784 (831)
+..+ .+.+...+|..+.-.+...|+.+|+|+..+.
T Consensus 166 ~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T PRK11568 166 EYQA---FVTLRVALPAAKVAEFSAKLADFSRGSLQLL 200 (204)
T ss_pred eecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 7743 5788999999988899999999999987654
No 420
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=95.86 E-value=0.069 Score=46.11 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=39.6
Q ss_pred eEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe
Q 003316 381 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 443 (831)
Q Consensus 381 l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~ 443 (831)
...+||.+|+++.||+|+++..+ . ..+|..|... ..+++.|.|||.+++.
T Consensus 17 ~v~Gkv~~G~v~~Gd~v~~~P~~----~-----~~~V~si~~~----~~~~~~a~aGd~v~l~ 66 (81)
T cd03695 17 GYAGTIASGSIRVGDEVVVLPSG----K-----TSRVKSIETF----DGELDEAGAGESVTLT 66 (81)
T ss_pred EEEEEEccceEECCCEEEEcCCC----C-----eEEEEEEEEC----CcEeCEEcCCCEEEEE
Confidence 68999999999999999987532 1 2578887642 4568899999999874
No 421
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=95.81 E-value=0.037 Score=57.94 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=30.3
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
+.+.+.||||||+.+ ..+..++..||.+|+.+....
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~ 117 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTP 117 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcH
Confidence 468999999999875 456789999999999987776
No 422
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=95.77 E-value=0.053 Score=46.99 Aligned_cols=55 Identities=31% Similarity=0.459 Sum_probs=41.6
Q ss_pred CCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe
Q 003316 375 SDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 443 (831)
Q Consensus 375 ~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~ 443 (831)
+..|. +..+||.+|++++|+++.++..+ . ..+|..|.. ...++++|.|||-+++.
T Consensus 12 ~~~g~-vv~G~v~sG~i~~g~~v~~~p~~----~-----~~~V~sI~~----~~~~~~~a~aGd~v~i~ 66 (83)
T cd03696 12 KGQGT-VVTGTVLSGSVKVGDKVEILPLG----E-----ETRVRSIQV----HGKDVEEAKAGDRVALN 66 (83)
T ss_pred CCcEE-EEEEEEeecEEeCCCEEEECCCC----c-----eEEEEEEEE----CCcCcCEEcCCCEEEEE
Confidence 34454 88999999999999999986432 1 257777764 24668899999999875
No 423
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.024 Score=68.30 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.|+++|+.|+||||++..|...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 57899999999999999999643
No 424
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.69 E-value=0.047 Score=60.54 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
++....|.|-.|||||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4566788999999999999999975
No 425
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.56 E-value=0.043 Score=49.44 Aligned_cols=70 Identities=27% Similarity=0.296 Sum_probs=47.2
Q ss_pred EEEEe-CCCCCHHHHHHHHHHHcCCcccccCC-ceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 22 MSVIA-HVDHGKSTLTDSLVAAAGIIAQEVAG-DVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 22 I~ivG-h~~~GKTTL~~~ll~~~g~i~~~~~g-~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
|++.| ..|+||||++-.|...... .| ++...|..+ .+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~-----------------------------------~~d 41 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDP-----------------------------------QYD 41 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCC-----------------------------------CCC
Confidence 56666 5799999999988555321 12 122222211 256
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
+.+||||+..+. ....++..+|.+++++++..
T Consensus 42 ~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 42 YIIIDTPPSLGL--LTRNALAAADLVLIPVQPSP 73 (104)
T ss_pred EEEEeCcCCCCH--HHHHHHHHCCEEEEeccCCH
Confidence 889999997644 34588999999999998764
No 426
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=95.53 E-value=0.03 Score=53.26 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=68.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
..|+++|....|||||.-..... . .| ..-++..|+-.-...+++.- -...
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~---~----------~d-e~~~q~~GvN~mdkt~~i~~----------------t~Is 70 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQN---E----------YD-EEYTQTLGVNFMDKTVSIRG----------------TDIS 70 (205)
T ss_pred EEEEeecccccCceeeehhhhcc---h----------hH-HHHHHHhCccceeeEEEecc----------------eEEE
Confidence 57999999999999998655211 0 01 11223334433333333321 2567
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--------Hh-------hhCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--------AL-------GERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~--------~~-------~~~~~~ii~iNKiD~~ 151 (831)
+.++|--|..+|....--|-..+-+++++.|-+. .| ..--.||++.+|.|..
T Consensus 71 fSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 71 FSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred EEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 8899999999998887777778888899999886 11 1224789999999986
No 427
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.43 E-value=0.098 Score=47.60 Aligned_cols=33 Identities=21% Similarity=0.066 Sum_probs=27.7
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
.+.+||||+..+. ....++..+|.+++|++...
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL 76 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh
Confidence 6889999997654 45678899999999999886
No 428
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=95.27 E-value=0.038 Score=58.82 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=48.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc-cCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~-~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
+..-|+-|+|-+|.|||||+|++........+. ..| .+-|+|+..+..--...
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG-----------~~pGVT~~V~~~iri~~--------------- 194 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVG-----------AEPGVTRRVSERIRISH--------------- 194 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceecc-----------CCCCceeeehhheEecc---------------
Confidence 345689999999999999999996555433321 122 23477777665222211
Q ss_pred CCeeEEEEeCCCC-cchHHHHHHHhhh
Q 003316 96 NEYLINLIDSPGH-VDFSSEVTAALRI 121 (831)
Q Consensus 96 ~~~~inliDTPGh-~df~~ev~~al~~ 121 (831)
.-.+.+|||||. ++-....+.+++.
T Consensus 195 -rp~vy~iDTPGil~P~I~~~e~~lKL 220 (335)
T KOG2485|consen 195 -RPPVYLIDTPGILVPSIVDVEDGLKL 220 (335)
T ss_pred -CCceEEecCCCcCCCCCCCHHHhhhh
Confidence 446899999994 2333344455544
No 429
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=95.18 E-value=0.052 Score=52.13 Aligned_cols=78 Identities=28% Similarity=0.342 Sum_probs=55.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCccc---ccCCceEEecCc--hhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQ---EVAGDVRMTDTR--QDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 22 I~ivGh~~~GKTTL~~~ll~~~g~i~~---~~~g~~~~~D~~--~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
..++|..-.|||+|+..+ ..|.... ...| .|+. -.|.+-| .
T Consensus 11 livigdstvgkssll~~f--t~gkfaelsdptvg----vdffarlie~~pg----------------------------~ 56 (213)
T KOG0091|consen 11 LIVIGDSTVGKSSLLRYF--TEGKFAELSDPTVG----VDFFARLIELRPG----------------------------Y 56 (213)
T ss_pred EEEEcCCcccHHHHHHHH--hcCcccccCCCccc----hHHHHHHHhcCCC----------------------------c
Confidence 458899999999999876 4443322 1122 1211 1122111 2
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
..++.|+||.|...|..-+..-.|.+=|+++|.|.+.
T Consensus 57 riklqlwdtagqerfrsitksyyrnsvgvllvyditn 93 (213)
T KOG0091|consen 57 RIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITN 93 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccc
Confidence 4578899999999999999999999999999999986
No 430
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=95.14 E-value=0.14 Score=44.58 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=46.0
Q ss_pred EEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe
Q 003316 366 LYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 443 (831)
Q Consensus 366 a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~ 443 (831)
..+|+. ...|. ++.+||-+|+|++|+.+.++..+ +-++.-+|..|... ..++++|.+|+-|.|.
T Consensus 6 ~~vf~~---~~~g~-vag~kV~~G~l~~g~~v~vlr~~------~~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~ 69 (84)
T cd03692 6 RAVFKI---SKVGN-IAGCYVTDGKIKRNAKVRVLRNG------EVIYEGKISSLKRF----KDDVKEVKKGYECGIT 69 (84)
T ss_pred EEEEEC---CCCcE-EEEEEEEECEEeCCCEEEEEcCC------CEEEEEEEEEEEEc----CcccCEECCCCEEEEE
Confidence 345543 23354 89999999999999999997532 11233577777743 5678999999999875
No 431
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=95.05 E-value=0.14 Score=54.09 Aligned_cols=148 Identities=18% Similarity=0.242 Sum_probs=80.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCc----ccccCCceEEecCchhhheeceeeee------------ceeEEEEe
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGII----AQEVAGDVRMTDTRQDEAERGITIKS------------TGISLYYE 80 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i----~~~~~g~~~~~D~~~~e~~rgiTi~~------------~~~~~~~~ 80 (831)
.+|..-.|-|-.|||||||++.+|...+-- -....| |....|+ ..+... +..-++..
T Consensus 55 ~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfG-----es~die~--sl~~~~~gg~lyEewv~L~NGClCCt 127 (391)
T KOG2743|consen 55 ARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFG-----ESSDIEK--SLAVSQEGGELYEEWVELRNGCLCCT 127 (391)
T ss_pred CccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcc-----cchhhhH--HHHhccccchHHHHHHHhcCCeEEEE
Confidence 456767789999999999999997543210 000122 2122222 111111 11112221
Q ss_pred echhhhhcccc-ccCCCCeeEEEEeCCCCcc-------hH-HHHHHHhhhcCeEEEEEecHH---HhhhCC---------
Q 003316 81 MTDAALKSYRG-ERQGNEYLINLIDSPGHVD-------FS-SEVTAALRITDGALVVVDCIE---ALGERI--------- 139 (831)
Q Consensus 81 ~~~~~~~~~~~-~~~~~~~~inliDTPGh~d-------f~-~ev~~al~~~D~avlVvda~~---~~~~~~--------- 139 (831)
-++..++-+.+ -...+.....++-|-|..+ |. .+-..+--..||+|-||||.. .+.+..
T Consensus 128 Vk~~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~ 207 (391)
T KOG2743|consen 128 VKDNGVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEAT 207 (391)
T ss_pred ecchHHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHH
Confidence 12221111111 0122345678999999876 22 122222235799999999997 222211
Q ss_pred -----CcEEEEecCcchhhccCCCHHHHHHHHHHHHHHhhhhhh
Q 003316 140 -----RPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMA 178 (831)
Q Consensus 140 -----~~ii~iNKiD~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 178 (831)
.-.|.+||.|+. . ++....+++.+..+|....
T Consensus 208 ~QiA~AD~II~NKtDli----~---~e~~~~l~q~I~~INslA~ 244 (391)
T KOG2743|consen 208 RQIALADRIIMNKTDLV----S---EEEVKKLRQRIRSINSLAQ 244 (391)
T ss_pred HHHhhhheeeecccccc----C---HHHHHHHHHHHHHhhhHHH
Confidence 125789999988 3 3566678887777776543
No 432
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.02 E-value=0.051 Score=55.74 Aligned_cols=55 Identities=27% Similarity=0.334 Sum_probs=38.4
Q ss_pred CCCCeeEEEEeC-CCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcE-EEEecCcch
Q 003316 94 QGNEYLINLIDS-PGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPV-LTVNKMDRC 151 (831)
Q Consensus 94 ~~~~~~inliDT-PGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~i-i~iNKiD~~ 151 (831)
..+.+.+.++|| .|..-|.. ...+.+|.+|+|+|... +-.-+.+++ +++||+|-.
T Consensus 130 ~~~~~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 130 ILNRYEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred hcccCcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 334567889999 67666763 45578999999999987 111233555 599999843
No 433
>PRK01889 GTPase RsgA; Reviewed
Probab=95.00 E-value=0.032 Score=62.32 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
-..++++|..|+|||||+++|+....
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcc
Confidence 35799999999999999999976543
No 434
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=94.96 E-value=0.13 Score=46.61 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=52.4
Q ss_pred CCCeEEEEEEeecCC--------CCCceeEEEEEEeeEecCCCEEEEcCC--CCCCCCcc-ccceeeeeeEEEEecCcee
Q 003316 361 EGPLMLYVSKMIPAS--------DKGRFFAFGRVFSGKVATGLKVRIMGP--NYVPGEKK-DLYVKSVQRTVIWMGKKQE 429 (831)
Q Consensus 361 ~~pl~a~VfK~~~~~--------~~g~~l~~~RV~sGtL~~g~~l~v~~~--n~~~~~~~-~~~~ekv~~L~~~~g~~~~ 429 (831)
+.|+.++|...+.-+ -+|. ++=++|.+|.|+.||++-+..- ....++.. .....+|..|+. ...
T Consensus 3 ~~pp~M~V~RsFdinkPG~~~~~l~Gg-VigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~----~~~ 77 (113)
T cd03688 3 TSPPRMIVIRSFDVNKPGTEVDDLKGG-VAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKA----ENN 77 (113)
T ss_pred CCCceEEEEEEEecCCCCCccccceee-EEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEe----cCc
Confidence 455666666655433 3344 8899999999999999976410 00000000 111234555442 445
Q ss_pred eeccccCCCEEEE-eccccccccce
Q 003316 430 TVEDVPCGNTVAM-VGLDQYITKNA 453 (831)
Q Consensus 430 ~v~~a~AGdIvai-~gl~~~~~~tg 453 (831)
.+++|.||+.++| ++|+..+++..
T Consensus 78 ~l~~a~pGgliGvgT~Ldpsltk~D 102 (113)
T cd03688 78 DLQEAVPGGLIGVGTKLDPTLTKAD 102 (113)
T ss_pred cccEEeCCCeEEEccccCccccccc
Confidence 6899999998888 46666655443
No 435
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=94.95 E-value=0.052 Score=69.98 Aligned_cols=20 Identities=30% Similarity=0.240 Sum_probs=17.1
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
.=..|+|..|+|||||+.+.
T Consensus 112 PWYlviG~~gsGKtt~l~~s 131 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS 131 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC
Confidence 34789999999999998765
No 436
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=94.77 E-value=0.023 Score=64.12 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
..+||+||-+|.|||+++|+|.....
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk 339 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK 339 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce
Confidence 68999999999999999999955433
No 437
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=94.74 E-value=0.13 Score=50.82 Aligned_cols=54 Identities=20% Similarity=0.089 Sum_probs=37.0
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHh--hhcCeEEEEEecHH-----------HhhhCC-CcE-EEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIE-----------ALGERI-RPV-LTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al--~~~D~avlVvda~~-----------~~~~~~-~~i-i~iNKiD~~ 151 (831)
..+.+.+||||+..+ .+....+ ..+|.+++|+.... .+.+.. +.+ +++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 478899999999753 3333343 68999999997775 233333 333 489999864
No 438
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.72 E-value=0.091 Score=58.65 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=73.7
Q ss_pred HHHHHHhhcc-cC-------CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecC---chhhheeceeeeece
Q 003316 6 AEELRRIMDF-KH-------NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDT---RQDEAERGITIKSTG 74 (831)
Q Consensus 6 ~~~~~~~~~~-~~-------~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~---~~~e~~rgiTi~~~~ 74 (831)
.+.|.++++. .. ..-.|-++|--||||||.+..|-.+-.. .....+ ....|. -..||-+...-+...
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvl-lVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVL-LVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceE-EEecccCChHHHHHHHHHHHHcCC
Confidence 4566777773 21 2345889999999999999999654322 111111 111221 112332222222221
Q ss_pred eEEEEe-echhh--hhccccccCCCCeeEEEEeCCCCcc----hHHHHH--HHhhhcCeEEEEEecHH---------Hhh
Q 003316 75 ISLYYE-MTDAA--LKSYRGERQGNEYLINLIDSPGHVD----FSSEVT--AALRITDGALVVVDCIE---------ALG 136 (831)
Q Consensus 75 ~~~~~~-~~~~~--~~~~~~~~~~~~~~inliDTPGh~d----f~~ev~--~al~~~D~avlVvda~~---------~~~ 136 (831)
-.|.-. ..++. .+..-.......+.+.||||.|... ...|+. ...-..|=.++|+||.- +..
T Consensus 157 ~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 157 PFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred ceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 111111 01110 0000011122356899999999533 444432 22335688999999986 344
Q ss_pred hCCCc-EEEEecCcc
Q 003316 137 ERIRP-VLTVNKMDR 150 (831)
Q Consensus 137 ~~~~~-ii~iNKiD~ 150 (831)
+..+. =++++|+|-
T Consensus 237 e~l~itGvIlTKlDG 251 (451)
T COG0541 237 EALGITGVILTKLDG 251 (451)
T ss_pred hhcCCceEEEEcccC
Confidence 55555 369999994
No 439
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=94.68 E-value=0.15 Score=45.41 Aligned_cols=71 Identities=17% Similarity=0.114 Sum_probs=50.5
Q ss_pred EEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccc
Q 003316 367 YVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLD 446 (831)
Q Consensus 367 ~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~ 446 (831)
+|.-...+...|. ++-+=|.+|+|+.||.+.... . . -||..|+-..| .++++|.||+.+-|.|++
T Consensus 4 ~VlE~~~~~g~G~-vatviV~~GtL~~Gd~iv~G~-~--~--------gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~ 68 (95)
T cd03702 4 VVIESKLDKGRGP-VATVLVQNGTLKVGDVLVAGT-T--Y--------GKVRAMFDENG---KRVKEAGPSTPVEILGLK 68 (95)
T ss_pred EEEEEEecCCCCc-cEEEEEEcCeEeCCCEEEEcc-c--c--------cEEEEEECCCC---CCCCEECCCCcEEEcCCC
Confidence 3443334555566 888999999999999997521 1 1 36666665554 678999999999999988
Q ss_pred cccccce
Q 003316 447 QYITKNA 453 (831)
Q Consensus 447 ~~~~~tg 453 (831)
+. ...|
T Consensus 69 ~~-P~aG 74 (95)
T cd03702 69 GV-PQAG 74 (95)
T ss_pred CC-CCCC
Confidence 75 3445
No 440
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=94.21 E-value=0.4 Score=54.33 Aligned_cols=135 Identities=19% Similarity=0.341 Sum_probs=78.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCc------------------------eEEecCchh----------
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD------------------------VRMTDTRQD---------- 62 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~------------------------~~~~D~~~~---------- 62 (831)
.+...|+++|.-.+|||+.++.+ ..+.+..+. .|+ .+-.|-..+
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmi-AqARIFPRG-SGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMI-AQARIFPRG-SGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccCceEEEEcCccccchHHHHHH-HHhccCcCC-CcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 45678999999999999999966 344433332 221 011121111
Q ss_pred ------hheeceeeeeceeEEEEeechhhhhccccccCCCCeeEEEEeCCCCcc-----h-------HHHH-HHHhhhcC
Q 003316 63 ------EAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVD-----F-------SSEV-TAALRITD 123 (831)
Q Consensus 63 ------e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDTPGh~d-----f-------~~ev-~~al~~~D 123 (831)
...-|.|+....+++... +.+-.+..|+|-||... . +..+ -.-+....
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVK-------------GPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPN 450 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVK-------------GPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPN 450 (980)
T ss_pred HHHHHhcccCCcccccceEEEeec-------------CCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCC
Confidence 123477888888888775 23455899999999642 1 1122 23334567
Q ss_pred eEEEEE-----ecHH-----Hh----hhCCCcEEEEecCcchhhccCCCHHHHHHHHHHHHH
Q 003316 124 GALVVV-----DCIE-----AL----GERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIE 171 (831)
Q Consensus 124 ~avlVv-----da~~-----~~----~~~~~~ii~iNKiD~~~~~~~~~~~~~~~~l~~~~~ 171 (831)
++||+| ||.. .. -.+..-|+|++|+|+.--++ ++|+. ++++++
T Consensus 451 AIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknl-A~PdR----I~kIle 507 (980)
T KOG0447|consen 451 AIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNV-ASPSR----IQQIIE 507 (980)
T ss_pred eEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhcc-CCHHH----HHHHHh
Confidence 777765 2222 11 12345578999999873222 45554 555554
No 441
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.11 E-value=0.053 Score=44.09 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~ 42 (831)
...|.|+.|+|||||++++.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999543
No 442
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=94.10 E-value=0.088 Score=57.91 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=45.0
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------------------Hhh----hCCCcEEEEecC
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------------------ALG----ERIRPVLTVNKM 148 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------------------~~~----~~~~~ii~iNKi 148 (831)
++..+.++|+.|...+..-.......++++++|||..+ .+. .+.|.++|+||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 36789999999998888888888889999999999985 111 234556699999
Q ss_pred cch
Q 003316 149 DRC 151 (831)
Q Consensus 149 D~~ 151 (831)
|+.
T Consensus 239 D~f 241 (317)
T cd00066 239 DLF 241 (317)
T ss_pred HHH
Confidence 977
No 443
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.03 E-value=0.045 Score=59.63 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
...-||++|-+++|||+++|.|...
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~K 330 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKK 330 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhc
Confidence 4567999999999999999999443
No 444
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=93.88 E-value=0.042 Score=53.73 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=29.4
Q ss_pred HHHHHhhhcCeEEEEEecHH-----------Hhhh---CCCcEEEEecCcch
Q 003316 114 EVTAALRITDGALVVVDCIE-----------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 114 ev~~al~~~D~avlVvda~~-----------~~~~---~~~~ii~iNKiD~~ 151 (831)
++..++..+|.+++|+|+.. .+.. +.|+++|+||+|+.
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC
Confidence 35688999999999999986 2222 25667799999986
No 445
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.87 E-value=0.07 Score=51.18 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=31.0
Q ss_pred HHHHHHhhhcCeEEEEEecHH-----------Hhhh---CCCcEEEEecCcch
Q 003316 113 SEVTAALRITDGALVVVDCIE-----------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 113 ~ev~~al~~~D~avlVvda~~-----------~~~~---~~~~ii~iNKiD~~ 151 (831)
.++..++..+|++++|+|+.. .+.. ++|.++++||+|+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 578899999999999999976 2222 45667799999975
No 446
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=93.78 E-value=0.057 Score=53.63 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=35.7
Q ss_pred CCCc-chHHHHHHHhhhcCeEEEEEecHH--------Hh--hhCCCcEEEEecCcch
Q 003316 106 PGHV-DFSSEVTAALRITDGALVVVDCIE--------AL--GERIRPVLTVNKMDRC 151 (831)
Q Consensus 106 PGh~-df~~ev~~al~~~D~avlVvda~~--------~~--~~~~~~ii~iNKiD~~ 151 (831)
|||. .-..++..++..+|.+++|+|+.+ .+ ..+.++++++||+|+.
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLA 59 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcC
Confidence 7775 456788999999999999999975 11 1245667899999976
No 447
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=93.66 E-value=0.13 Score=57.07 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=44.5
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------------------Hh----hhCCCcEEEEecCc
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------------------AL----GERIRPVLTVNKMD 149 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------------------~~----~~~~~~ii~iNKiD 149 (831)
+..+.++|..|...+..-.......++++|+|||..+ .+ -.+.|.+|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 6678999999998888888888899999999999985 11 12345566999999
Q ss_pred ch
Q 003316 150 RC 151 (831)
Q Consensus 150 ~~ 151 (831)
+.
T Consensus 263 ~~ 264 (342)
T smart00275 263 LF 264 (342)
T ss_pred hH
Confidence 77
No 448
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=93.54 E-value=0.065 Score=57.71 Aligned_cols=46 Identities=24% Similarity=0.404 Sum_probs=36.0
Q ss_pred CCCc-chHHHHHHHhhhcCeEEEEEecHH-------Hh---hhCCCcEEEEecCcch
Q 003316 106 PGHV-DFSSEVTAALRITDGALVVVDCIE-------AL---GERIRPVLTVNKMDRC 151 (831)
Q Consensus 106 PGh~-df~~ev~~al~~~D~avlVvda~~-------~~---~~~~~~ii~iNKiD~~ 151 (831)
|||. ....++..++..+|.+|+|+|+.. .+ ..+.|.++|+||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccC
Confidence 8886 467789999999999999999975 11 1245557799999975
No 449
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=93.49 E-value=0.067 Score=54.66 Aligned_cols=56 Identities=27% Similarity=0.297 Sum_probs=35.3
Q ss_pred CCeeEEEEeCCCCcch------HHHHHHHhhhcCeEEEEEecHH--------------------HhhhCCCcEEEEecCc
Q 003316 96 NEYLINLIDSPGHVDF------SSEVTAALRITDGALVVVDCIE--------------------ALGERIRPVLTVNKMD 149 (831)
Q Consensus 96 ~~~~inliDTPGh~df------~~ev~~al~~~D~avlVvda~~--------------------~~~~~~~~ii~iNKiD 149 (831)
...+..|+||||.+.| ...+.+-++..|.-+.+|.-.+ ++..-.|.|=++.|+|
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhH
Confidence 3557889999997765 3446667777776655554443 1222234444888888
Q ss_pred ch
Q 003316 150 RC 151 (831)
Q Consensus 150 ~~ 151 (831)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 76
No 450
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.41 E-value=0.75 Score=49.67 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=29.1
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHH
Q 003316 7 EELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 7 ~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll 40 (831)
+.+.+++-+..+.-.|+++|.-|+|||||...|.
T Consensus 176 d~a~~ll~~~tdf~VIgvlG~QgsGKStllslLa 209 (491)
T KOG4181|consen 176 DNARKLLHKTTDFTVIGVLGGQGSGKSTLLSLLA 209 (491)
T ss_pred hHHHHHhhcCCCeeEEEeecCCCccHHHHHHHHh
Confidence 4567777777888999999999999999998773
No 451
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=0.2 Score=63.14 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=36.0
Q ss_pred eeEEEEeCCC----C--cchHHHH-----------HHHhhhcCeEEEEEecHH-------------------------Hh
Q 003316 98 YLINLIDSPG----H--VDFSSEV-----------TAALRITDGALVVVDCIE-------------------------AL 135 (831)
Q Consensus 98 ~~inliDTPG----h--~df~~ev-----------~~al~~~D~avlVvda~~-------------------------~~ 135 (831)
..-.+|||.| | .++.... .+..+-.||+|+.+|..+ .+
T Consensus 174 deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL 253 (1188)
T COG3523 174 DEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL 253 (1188)
T ss_pred cceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567999999 2 2222221 233356899999999998 11
Q ss_pred hhCCCcEEEEecCcch
Q 003316 136 GERIRPVLTVNKMDRC 151 (831)
Q Consensus 136 ~~~~~~ii~iNKiD~~ 151 (831)
.-..|+.+++||+|+.
T Consensus 254 ~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 254 HARLPVYLVLTKADLL 269 (1188)
T ss_pred ccCCceEEEEeccccc
Confidence 2245667899999986
No 452
>PHA00729 NTP-binding motif containing protein
Probab=92.90 E-value=0.14 Score=52.95 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=32.4
Q ss_pred CccccHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 1 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
|+++...++.++.+ ....||.|.|.+|+|||||+.+|....+
T Consensus 1 ~~~~~k~~~~~l~~--~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 1 MLWLAKKIVSAYNN--NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CchHHHHHHHHHhc--CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55666666666655 3456999999999999999999977643
No 453
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=92.85 E-value=0.15 Score=53.38 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=28.7
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 7 EELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 7 ~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.|...+....+..-|||.|+.|||||||++.|...
T Consensus 21 ~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 21 RRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 445566666567788999999999999999999544
No 454
>KOG2484 consensus GTPase [General function prediction only]
Probab=92.82 E-value=0.15 Score=55.98 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=29.3
Q ss_pred cHHHHHHhhcccC------CeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 5 TAEELRRIMDFKH------NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 5 ~~~~~~~~~~~~~------~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
..+.+-+++.+.. +...+||+|-++.|||+++++|.....
T Consensus 232 gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~ 277 (435)
T KOG2484|consen 232 GAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKA 277 (435)
T ss_pred hHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhcc
Confidence 3455666665432 345699999999999999999976543
No 455
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.71 E-value=0.17 Score=54.79 Aligned_cols=125 Identities=21% Similarity=0.216 Sum_probs=65.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHc---CCcccccCCceEEecCchhhh------eeceeeeeceeEEEEeechhhh-hc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAA---GIIAQEVAGDVRMTDTRQDEA------ERGITIKSTGISLYYEMTDAAL-KS 88 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~---g~i~~~~~g~~~~~D~~~~e~------~rgiTi~~~~~~~~~~~~~~~~-~~ 88 (831)
.-.|.++|-.|+||||.+..|.++- |.-.-.-+|++ ..--..|| +-|..+-+. .+..++.++ -.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DT--FRAaAiEQL~~w~er~gv~vI~~----~~G~DpAaVafD 212 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDT--FRAAAIEQLEVWGERLGVPVISG----KEGADPAAVAFD 212 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecch--HHHHHHHHHHHHHHHhCCeEEcc----CCCCCcHHHHHH
Confidence 4567899999999999999885542 21110011210 00001111 123322211 111111110 00
Q ss_pred cccccCCCCeeEEEEeCCCC----cchHHHHHHHhhhc---Ce-----EEEEEecHH---------HhhhCCCc-EEEEe
Q 003316 89 YRGERQGNEYLINLIDSPGH----VDFSSEVTAALRIT---DG-----ALVVVDCIE---------ALGERIRP-VLTVN 146 (831)
Q Consensus 89 ~~~~~~~~~~~inliDTPGh----~df~~ev~~al~~~---D~-----avlVvda~~---------~~~~~~~~-ii~iN 146 (831)
.-.....+++.+.||||.|. .+++.|+..-.|++ +. .++|+||.- ...+..+. =++++
T Consensus 213 Ai~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 213 AIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILT 292 (340)
T ss_pred HHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEE
Confidence 00112235788999999993 46777766555543 44 777889997 22233444 46899
Q ss_pred cCc
Q 003316 147 KMD 149 (831)
Q Consensus 147 KiD 149 (831)
|+|
T Consensus 293 KlD 295 (340)
T COG0552 293 KLD 295 (340)
T ss_pred ecc
Confidence 999
No 456
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.64 E-value=0.12 Score=47.68 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.|+|.|.+||||||+++.|....|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 489999999999999999966544
No 457
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.44 E-value=0.14 Score=51.74 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.-.+++|+|+.|||||||+++|+..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999654
No 458
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.42 E-value=0.12 Score=51.75 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcc
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~ 47 (831)
+|.|+|++||||||++..|....+..+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 789999999999999999987755543
No 459
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.30 E-value=0.14 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.|+|+|+.|+|||||++.|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999765
No 460
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.22 E-value=0.17 Score=52.60 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=17.9
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~l 39 (831)
-|+|+||.|||||||.+.+
T Consensus 31 fvsilGpSGcGKSTLLrii 49 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLI 49 (248)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999988
No 461
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=92.20 E-value=0.12 Score=52.20 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=35.0
Q ss_pred CCCcchHHHHHHHhhhcCeEEEEEecHH--------H--hhhCCCcEEEEecCcch
Q 003316 106 PGHVDFSSEVTAALRITDGALVVVDCIE--------A--LGERIRPVLTVNKMDRC 151 (831)
Q Consensus 106 PGh~df~~ev~~al~~~D~avlVvda~~--------~--~~~~~~~ii~iNKiD~~ 151 (831)
|.+..|...+...++.+|++++|+|+.+ . ...+.|.++|+||+|+.
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~ 74 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLL 74 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcC
Confidence 4455578888888999999999999986 1 12234556799999986
No 462
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.11 E-value=0.75 Score=49.54 Aligned_cols=38 Identities=11% Similarity=0.429 Sum_probs=30.7
Q ss_pred HHHHHHhhcccC--CeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 6 AEELRRIMDFKH--NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 6 ~~~~~~~~~~~~--~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.+.|.+++..|. +.+|+.|+|..|.|||++++++....
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 356677777664 56799999999999999999996643
No 463
>PRK08118 topology modulation protein; Reviewed
Probab=91.79 E-value=0.16 Score=50.38 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
++|.|+|..|||||||+..|-...+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999966654
No 464
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.76 E-value=0.15 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.209 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..++|+|+.|+|||||++.++..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 57899999999999999988653
No 465
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.64 E-value=0.17 Score=52.03 Aligned_cols=25 Identities=12% Similarity=0.217 Sum_probs=22.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+...|+|.|+.|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999654
No 466
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=91.60 E-value=0.32 Score=38.35 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=49.9
Q ss_pred EEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCC
Q 003316 722 IQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 780 (831)
Q Consensus 722 I~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~ 780 (831)
|+||-..+|.|-..|.+..+.|.+.+-.+ .+.+...+|..+.-.|...|..+|+|+
T Consensus 1 i~~~Y~~~~~v~~~l~~~~~~i~~~~y~~---~V~~~v~v~~~~~~~f~~~l~~~t~G~ 56 (56)
T PF09186_consen 1 ISCDYSQYGKVERLLEQNGIEIVDEDYTD---DVTLTVAVPEEEVEEFKAQLTDLTSGR 56 (56)
T ss_dssp EEE-CCCHHHHHHHHHHTTTEEEEEEECT---TEEEEEEEECCCHHHHHHHHHHHTTT-
T ss_pred CEechhhHHHHHHHHHHCCCEEEcceecc---eEEEEEEECHHHHHHHHHHHHHHcCCC
Confidence 57889999999999999999999988754 589999999999999999999999996
No 467
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=91.59 E-value=0.25 Score=54.03 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=30.6
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 7 EELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 7 ~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+.|+-|..+..+-|++.+=|++|+|||||+-+||.-.|
T Consensus 143 ~iL~~lv~N~PKkRy~lFkGPvNsGKTTlAAAlLdL~g 180 (417)
T PF06431_consen 143 EILKCLVENIPKKRYWLFKGPVNSGKTTLAAALLDLCG 180 (417)
T ss_dssp HHHHHHHHTBTTB-EEEEE-STTSSHHHHHHHHHHHH-
T ss_pred HHHHHHhcCCCcceeEEEecCcCCchHHHHHHHHHhcC
Confidence 45566777888899999999999999999999998765
No 468
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=91.54 E-value=1 Score=40.13 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=49.4
Q ss_pred EEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccc
Q 003316 367 YVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLD 446 (831)
Q Consensus 367 ~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~ 446 (831)
+|.-...+...|. ++-+=|++|+|+.||.+.... . . -||..++- ..-..+.+|.+|+.+-+.|++
T Consensus 4 ~ViE~~~~~g~G~-vatviV~~GtL~~Gd~iv~G~-~--~--------GkVr~~~d---~~g~~v~~a~Ps~~v~i~g~~ 68 (95)
T cd03701 4 TVIESKLDKGRGP-VATVIVQNGTLKKGDVIVAGG-T--Y--------GKIRTMVD---ENGKALLEAGPSTPVEILGLK 68 (95)
T ss_pred EEEEEEecCCCCe-eEEEEEEcCeEecCCEEEECC-c--c--------ceEEEEEC---CCCCCccccCCCCCEEEeeec
Confidence 3333334555666 888999999999999998521 1 1 35555554 444568999999999999987
Q ss_pred cccccce
Q 003316 447 QYITKNA 453 (831)
Q Consensus 447 ~~~~~tg 453 (831)
+. ...|
T Consensus 69 ~~-p~aG 74 (95)
T cd03701 69 DV-PKAG 74 (95)
T ss_pred CC-ccCC
Confidence 75 3455
No 469
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.52 E-value=0.16 Score=42.29 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.|++.|..|+||||++++|...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999544
No 470
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.52 E-value=0.65 Score=40.33 Aligned_cols=68 Identities=26% Similarity=0.276 Sum_probs=46.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeEE
Q 003316 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLIN 101 (831)
Q Consensus 22 I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (831)
+++.|..|+||||++..|...-.. .|. .+ +.. + .+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~---------------~v------~~~-----------------~-d~i 37 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGK---------------RV------LLI-----------------D-DYV 37 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCC---------------eE------EEE-----------------C-CEE
Confidence 678888999999999999554311 121 00 000 1 577
Q ss_pred EEeCCCCcchHHH-HHHHhhhcCeEEEEEecHH
Q 003316 102 LIDSPGHVDFSSE-VTAALRITDGALVVVDCIE 133 (831)
Q Consensus 102 liDTPGh~df~~e-v~~al~~~D~avlVvda~~ 133 (831)
++|+||-.+.... ....+..+|.++++++...
T Consensus 38 ivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~ 70 (99)
T cd01983 38 LIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA 70 (99)
T ss_pred EEeCCCCccchhhhhhhhhhhCCEEEEecCCch
Confidence 9999997665432 2567788999999998775
No 471
>PRK07261 topology modulation protein; Provisional
Probab=91.41 E-value=0.19 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHc
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
+|+|+|.+|+|||||+..|....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999985543
No 472
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.31 E-value=0.22 Score=51.68 Aligned_cols=28 Identities=39% Similarity=0.604 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g 52 (831)
.|||+||.|||||||..-| +|++... .|
T Consensus 55 ~vGiiG~NGaGKSTLlkli---aGi~~Pt-~G 82 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLI---AGIYKPT-SG 82 (249)
T ss_pred EEEEECCCCCcHHHHHHHH---hCccCCC-Cc
Confidence 5899999999999999988 5555443 44
No 473
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.21 E-value=0.2 Score=51.79 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=18.0
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~l 39 (831)
-|+|+|+.|||||||.+.+
T Consensus 33 ~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999988
No 474
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=91.18 E-value=0.21 Score=51.23 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=22.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.-..|+|+|+.|||||||+++|...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999654
No 475
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.13 E-value=0.42 Score=49.10 Aligned_cols=105 Identities=16% Similarity=0.247 Sum_probs=62.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
.|.++|+--+|||++.....+... ..++-++.. ...+|...-. +.-..+
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMs------PneTlflES-----Tski~~d~is--------------------~sfinf 77 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMS------PNETLFLES-----TSKITRDHIS--------------------NSFINF 77 (347)
T ss_pred eEEEEeecccCcchhhheeeeccC------CCceeEeec-----cCcccHhhhh--------------------hhhcce
Confidence 499999999999999876533321 222222211 1111111000 012356
Q ss_pred EEEeCCCCcchHH---HHHHHhhhcCeEEEEEecHH----Hhh---------hC-CCc---EEEEecCcchhhccC
Q 003316 101 NLIDSPGHVDFSS---EVTAALRITDGALVVVDCIE----ALG---------ER-IRP---VLTVNKMDRCFLELQ 156 (831)
Q Consensus 101 nliDTPGh~df~~---ev~~al~~~D~avlVvda~~----~~~---------~~-~~~---ii~iNKiD~~~~~~~ 156 (831)
.+||-||..||.. .-+.-.+.+.+.|+||||.+ ++. .. +|- =+||-|.|-+-.+.+
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~k 153 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFK 153 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhh
Confidence 7899999988743 34566788999999999998 111 11 222 359999996643333
No 476
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.12 E-value=0.22 Score=49.59 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.+.++|+|..|+|||||+++|+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4567899999999999999999654
No 477
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.07 E-value=0.21 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcC
Q 003316 22 MSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 22 I~ivGh~~~GKTTL~~~ll~~~g 44 (831)
|.++|++|+||||+++.|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 67999999999999999976654
No 478
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=91.06 E-value=0.24 Score=50.82 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=26.7
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 13 ~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
|..+.+..-|||.|..+|||||+++.|...-+
T Consensus 2 ~~~~~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 2 MKKPEKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CCCCCceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 44456778999999999999999999976654
No 479
>PRK07667 uridine kinase; Provisional
Probab=91.00 E-value=0.31 Score=49.51 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=27.2
Q ss_pred HHHHHHhhcccCC-eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 6 AEELRRIMDFKHN-IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 6 ~~~~~~~~~~~~~-irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.+.|.+.+...+. -+.|||.|..|+|||||++.|...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555554332 367899999999999999999554
No 480
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=90.90 E-value=0.18 Score=54.62 Aligned_cols=46 Identities=26% Similarity=0.373 Sum_probs=35.5
Q ss_pred CCCcc-hHHHHHHHhhhcCeEEEEEecHH-------Hh---hhCCCcEEEEecCcch
Q 003316 106 PGHVD-FSSEVTAALRITDGALVVVDCIE-------AL---GERIRPVLTVNKMDRC 151 (831)
Q Consensus 106 PGh~d-f~~ev~~al~~~D~avlVvda~~-------~~---~~~~~~ii~iNKiD~~ 151 (831)
|||.. =..++..++..+|.+|+|+|+.. .+ ..+.|.++|+||+|+.
T Consensus 8 pgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~ 64 (287)
T PRK09563 8 PGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLA 64 (287)
T ss_pred HHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcC
Confidence 88864 45678899999999999999975 11 1245667799999975
No 481
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.88 E-value=0.18 Score=55.64 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.-+||.|+|.+|+|||||+++|+..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhh
Confidence 3579999999999999999999654
No 482
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=90.83 E-value=0.26 Score=54.07 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=30.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCc-----eEEecCchhhheece
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-----VRMTDTRQDEAERGI 68 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~-----~~~~D~~~~e~~rgi 68 (831)
-++++|+.|||||||++.+ +|..... .|+ ..++|..|.+|.-++
T Consensus 31 f~vllGPSGcGKSTlLr~I---AGLe~~~-~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMI---AGLEEPT-SGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEECCCCCCHHHHHHHH---hCCCCCC-CceEEECCEECCCCChhHCCEEE
Confidence 4889999999999999988 4444322 232 356777777754443
No 483
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=90.80 E-value=1.2 Score=44.26 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.|.|.|.++|||||+++.|....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 589999999999999999987744
No 484
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=90.64 E-value=1.2 Score=40.64 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=47.2
Q ss_pred CCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecC-------ceeeecccc--CCCEEEEec
Q 003316 374 ASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGK-------KQETVEDVP--CGNTVAMVG 444 (831)
Q Consensus 374 ~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~-------~~~~v~~a~--AGdIvai~g 444 (831)
++..|. .+-+=+|+|+|+.||.+.+.+.+ | ...-||..|+...+. .+..++++. +|=-+...|
T Consensus 11 ~~G~G~-t~dvIl~~GtL~~GD~Iv~g~~~---G----pi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 11 EEGLGT-TIDVILYDGTLREGDTIVVCGLN---G----PIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred cCCCce-EEEEEEECCeEecCCEEEEccCC---C----CceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 455565 77888999999999999875432 1 011377888777773 446777777 676667778
Q ss_pred cccc
Q 003316 445 LDQY 448 (831)
Q Consensus 445 l~~~ 448 (831)
|++.
T Consensus 83 L~~v 86 (110)
T cd03703 83 LEKA 86 (110)
T ss_pred Cccc
Confidence 8876
No 485
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=90.58 E-value=1.3 Score=45.83 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=34.1
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------------H---hhhCCCcEEEEecCc
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------------A---LGERIRPVLTVNKMD 149 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------------~---~~~~~~~ii~iNKiD 149 (831)
..+.+.||||+|-..-. +..++..+|.+|+=.-.+. . .....|..|+.|++.
T Consensus 82 ~~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~ 151 (231)
T PF07015_consen 82 SGFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVP 151 (231)
T ss_pred cCCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCC
Confidence 35789999999965543 4467778998887654432 1 112235567999986
No 486
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=90.54 E-value=0.3 Score=47.52 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=27.3
Q ss_pred HHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcch
Q 003316 114 EVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 114 ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~ 151 (831)
.....++.+|.+|+|+|+.+ .+. .+.|.++++||+|+.
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 34556667999999999975 122 245556799999985
No 487
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=90.53 E-value=0.27 Score=49.25 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=24.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCc
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i 46 (831)
++..|+|+|.+||||||++..|....|..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 35679999999999999999997665543
No 488
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=90.38 E-value=0.31 Score=48.43 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=22.1
Q ss_pred HHHHHhh--cccCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 7 EELRRIM--DFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 7 ~~~~~~~--~~~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.+...+ ......+++.|.|..|+|||||+.+++..
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp HHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555 33455799999999999999999998655
No 489
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=90.37 E-value=0.44 Score=37.99 Aligned_cols=36 Identities=31% Similarity=0.507 Sum_probs=19.7
Q ss_pred HHHHHhh-hcCeEEEEEecHH--------------Hhh--hCCCcE-EEEecCc
Q 003316 114 EVTAALR-ITDGALVVVDCIE--------------ALG--ERIRPV-LTVNKMD 149 (831)
Q Consensus 114 ev~~al~-~~D~avlVvda~~--------------~~~--~~~~~i-i~iNKiD 149 (831)
+...|++ ..+.+++++|.++ .++ ...+|+ +|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3456665 6788999999998 111 124555 5999998
No 490
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=90.34 E-value=1.3 Score=48.08 Aligned_cols=36 Identities=31% Similarity=0.313 Sum_probs=27.8
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
+|.+.||||||.... ..+..++..||.+|+++++..
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~ 150 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGF 150 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCH
Confidence 588999999997332 223467889999999998875
No 491
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=90.31 E-value=0.21 Score=50.67 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHc
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.|+|.|+.+||||||+++|...-
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999996553
No 492
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.30 E-value=0.28 Score=53.88 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=25.7
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 7 EELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 7 ~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
++|..++.. -.||.|+|.+|||||||+++|+..
T Consensus 135 ~~L~~~v~~---~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 135 SVIRSAIDS---RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred HHHHHHHHc---CCeEEEECCCCCCHHHHHHHHHHH
Confidence 344544443 369999999999999999999765
No 493
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=90.25 E-value=2 Score=46.19 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll 40 (831)
-.||.++|..++|||||+..|-
T Consensus 52 gk~VlvlGdn~sGKtsLi~klq 73 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQ 73 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhh
Confidence 4799999999999999999983
No 494
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=90.15 E-value=0.28 Score=48.22 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.|+|+|..|+|||||+++|+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999654
No 495
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.14 E-value=0.69 Score=50.83 Aligned_cols=127 Identities=17% Similarity=0.252 Sum_probs=64.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHc---CCcccccCCce-E--EecCchhh-heeceeeeeceeEEEEeechhh-hhcc-c
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAA---GIIAQEVAGDV-R--MTDTRQDE-AERGITIKSTGISLYYEMTDAA-LKSY-R 90 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~---g~i~~~~~g~~-~--~~D~~~~e-~~rgiTi~~~~~~~~~~~~~~~-~~~~-~ 90 (831)
-.|-++|--|+||||.+-.|.++- |.-.-..++++ | ..|...+- ..-++.+..+ |...++. +.+. -
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygs-----yte~dpv~ia~egv 176 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGS-----YTEADPVKIASEGV 176 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEec-----ccccchHHHHHHHH
Confidence 457889999999999999997653 21111111211 1 12322221 1112222111 1111110 0000 0
Q ss_pred cccCCCCeeEEEEeCCCCcc----hHHHHHHHhh--hcCeEEEEEecHH---------HhhhCCCc-EEEEecCcch
Q 003316 91 GERQGNEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIE---------ALGERIRP-VLTVNKMDRC 151 (831)
Q Consensus 91 ~~~~~~~~~inliDTPGh~d----f~~ev~~al~--~~D~avlVvda~~---------~~~~~~~~-ii~iNKiD~~ 151 (831)
......++.+.|+||-|... +..|+..... ..|-+|+|+||.- +..+.+-. -++++|+|-.
T Consensus 177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEecccC
Confidence 01122467899999999532 3334333332 2699999999986 22222222 4689999954
No 496
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=90.09 E-value=0.23 Score=51.52 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHH
Q 003316 22 MSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 22 I~ivGh~~~GKTTL~~~ll~~ 42 (831)
|||.|..|||||||++.|...
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 799999999999999999654
No 497
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=90.05 E-value=0.27 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.++|+|..|+|||||+++|+..
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHH
Confidence 57899999999999999999544
No 498
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.98 E-value=0.26 Score=45.63 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+++.|+|+.|+||||++..|.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 5789999999999999999966543
No 499
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=89.95 E-value=0.25 Score=45.79 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHc
Q 003316 22 MSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 22 I~ivGh~~~GKTTL~~~ll~~~ 43 (831)
|+|.|..|+||||+++.|....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999996553
No 500
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=89.87 E-value=0.27 Score=53.47 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~ 41 (831)
.||.|.|-.|+|||||+|+|+.
T Consensus 174 ~NILisGGTGSGKTTlLNal~~ 195 (355)
T COG4962 174 CNILISGGTGSGKTTLLNALSG 195 (355)
T ss_pred eeEEEeCCCCCCHHHHHHHHHh
Confidence 5999999999999999999943
Done!