Query 003316
Match_columns 831
No_of_seqs 297 out of 2310
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 21:04:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 100.0 5E-154 2E-158 1402.3 82.1 828 1-831 1-842 (842)
2 4fn5_A EF-G 1, elongation fact 100.0 5E-121 2E-125 1097.7 51.5 659 17-797 11-700 (709)
3 2rdo_7 EF-G, elongation factor 100.0 3E-112 1E-116 1017.4 66.3 660 15-810 6-701 (704)
4 2xex_A Elongation factor G; GT 100.0 8E-110 3E-114 995.8 59.0 650 16-811 7-690 (693)
5 1dar_A EF-G, elongation factor 100.0 3E-110 1E-114 998.8 49.8 647 15-809 8-689 (691)
6 3j25_A Tetracycline resistance 100.0 6E-113 2E-117 1014.5 11.8 589 18-801 1-620 (638)
7 2dy1_A Elongation factor G; tr 100.0 1E-101 3E-106 922.6 59.0 622 16-812 6-662 (665)
8 3vqt_A RF-3, peptide chain rel 100.0 1.5E-76 5.2E-81 689.0 27.9 440 12-561 24-502 (548)
9 2ywe_A GTP-binding protein LEP 100.0 2E-72 6.8E-77 655.5 43.7 476 16-813 3-522 (600)
10 3cb4_D GTP-binding protein LEP 100.0 9.1E-71 3.1E-75 643.1 43.3 474 17-813 2-517 (599)
11 2h5e_A Peptide chain release f 100.0 2E-60 6.7E-65 551.4 30.9 432 15-559 9-477 (529)
12 3tr5_A RF-3, peptide chain rel 100.0 4E-59 1.4E-63 539.8 27.9 430 16-559 10-476 (528)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 1.2E-38 4E-43 339.7 20.3 196 441-799 2-209 (332)
14 3j2k_7 ERF3, eukaryotic polype 99.9 3.6E-26 1.2E-30 259.8 28.3 276 16-460 14-328 (439)
15 2c78_A Elongation factor TU-A; 99.9 2E-26 6.8E-31 259.9 21.4 284 14-459 6-308 (405)
16 1d2e_A Elongation factor TU (E 99.9 1.1E-26 3.9E-31 261.0 17.8 271 19-459 3-290 (397)
17 1g7s_A Translation initiation 99.9 6.9E-27 2.4E-31 273.4 15.4 328 18-499 4-373 (594)
18 1jny_A EF-1-alpha, elongation 99.9 4.8E-26 1.6E-30 258.9 18.3 119 17-151 4-157 (435)
19 3mca_A HBS1, elongation factor 99.9 1.9E-26 6.5E-31 270.7 13.7 276 17-460 175-490 (592)
20 3p26_A Elongation factor 1 alp 99.9 6.9E-25 2.4E-29 252.6 23.1 291 10-460 24-363 (483)
21 1r5b_A Eukaryotic peptide chai 99.9 5.4E-25 1.8E-29 252.1 20.1 127 7-151 33-194 (467)
22 3avx_A Elongation factor TS, e 99.9 1.3E-24 4.5E-29 263.1 19.3 273 16-459 293-581 (1289)
23 1zun_B Sulfate adenylate trans 99.9 6.5E-24 2.2E-28 241.3 22.0 132 8-159 11-174 (434)
24 1f60_A Elongation factor EEF1A 99.9 3.5E-24 1.2E-28 244.8 19.7 289 13-459 1-328 (458)
25 2elf_A Protein translation elo 99.9 1.1E-23 3.9E-28 233.6 21.7 91 19-150 21-125 (370)
26 3izq_1 HBS1P, elongation facto 99.9 3.8E-24 1.3E-28 251.8 18.5 289 13-459 161-496 (611)
27 1kk1_A EIF2gamma; initiation o 99.9 2.4E-23 8.1E-28 235.1 23.3 121 17-151 8-150 (410)
28 1s0u_A EIF-2-gamma, translatio 99.9 6.7E-22 2.3E-26 223.0 21.7 121 17-151 6-148 (408)
29 1zo1_I IF2, translation initia 99.9 7.2E-24 2.4E-28 242.1 1.5 103 17-151 2-116 (501)
30 3sjy_A Translation initiation 99.9 7.6E-21 2.6E-25 214.0 21.7 121 17-151 6-142 (403)
31 1wb1_A Translation elongation 99.9 2.9E-22 9.8E-27 230.1 9.2 109 18-151 18-138 (482)
32 3izy_P Translation initiation 99.8 3.1E-22 1.1E-26 230.4 2.9 103 18-151 3-117 (537)
33 1wf3_A GTP-binding protein; GT 99.4 4.3E-13 1.5E-17 144.5 11.6 105 16-151 4-130 (301)
34 2xtp_A GTPase IMAP family memb 99.4 8.6E-13 2.9E-17 139.0 13.5 105 17-151 20-152 (260)
35 3lxw_A GTPase IMAP family memb 99.4 3E-12 1E-16 134.0 12.4 112 18-163 20-160 (247)
36 2lkc_A Translation initiation 99.3 9.7E-13 3.3E-17 129.3 5.7 108 17-160 6-125 (178)
37 1ega_A Protein (GTP-binding pr 99.3 1.3E-12 4.5E-17 140.9 6.2 103 18-151 7-129 (301)
38 2hjg_A GTP-binding protein ENG 99.3 4E-12 1.4E-16 144.3 10.3 103 18-151 174-299 (436)
39 3tw8_B RAS-related protein RAB 99.3 2.8E-12 9.6E-17 126.1 7.2 109 13-151 3-126 (181)
40 3def_A T7I23.11 protein; chlor 99.3 9.7E-12 3.3E-16 131.3 11.1 106 15-151 32-164 (262)
41 2dyk_A GTP-binding protein; GT 99.3 1.2E-11 4.2E-16 119.1 10.9 102 19-151 1-121 (161)
42 3iby_A Ferrous iron transport 99.3 7E-12 2.4E-16 131.9 9.7 101 19-151 1-123 (256)
43 3tkl_A RAS-related protein RAB 99.3 5E-12 1.7E-16 126.3 8.3 112 10-151 7-134 (196)
44 2fh5_B SR-beta, signal recogni 99.3 3.1E-11 1.1E-15 122.7 14.1 122 15-172 3-146 (214)
45 3qq5_A Small GTP-binding prote 99.3 1.8E-12 6.2E-17 145.5 5.3 105 17-151 32-153 (423)
46 3iev_A GTP-binding protein ERA 99.3 2.2E-11 7.5E-16 131.7 13.1 105 17-151 8-135 (308)
47 3k53_A Ferrous iron transport 99.3 6E-12 2E-16 133.6 8.2 102 18-151 2-122 (271)
48 2bme_A RAB4A, RAS-related prot 99.3 1.2E-11 4.2E-16 122.4 9.8 107 15-151 6-128 (186)
49 1z0f_A RAB14, member RAS oncog 99.3 1.6E-11 5.5E-16 120.4 10.4 105 17-151 13-133 (179)
50 1wms_A RAB-9, RAB9, RAS-relate 99.2 2.4E-11 8.3E-16 119.1 11.5 107 15-151 3-129 (177)
51 2y8e_A RAB-protein 6, GH09086P 99.2 1.3E-11 4.5E-16 121.0 8.8 108 14-151 9-132 (179)
52 1zd9_A ADP-ribosylation factor 99.2 3.2E-11 1.1E-15 120.2 11.6 100 18-151 21-137 (188)
53 2fn4_A P23, RAS-related protei 99.2 2.7E-11 9.3E-16 119.0 10.9 107 14-151 4-127 (181)
54 2il1_A RAB12; G-protein, GDP, 99.2 2.4E-11 8.3E-16 121.6 10.6 104 18-151 25-144 (192)
55 1ky3_A GTP-binding protein YPT 99.2 1.9E-11 6.5E-16 120.2 9.7 107 16-151 5-131 (182)
56 1r8s_A ADP-ribosylation factor 99.2 3.4E-11 1.2E-15 116.5 11.3 96 21-151 2-114 (164)
57 3i8s_A Ferrous iron transport 99.2 1.8E-11 6.2E-16 130.1 10.1 100 20-151 4-125 (274)
58 2p5s_A RAS and EF-hand domain 99.2 2E-11 7E-16 122.8 10.0 105 17-151 26-146 (199)
59 1ek0_A Protein (GTP-binding pr 99.2 2.1E-11 7.2E-16 118.3 9.8 102 20-151 4-121 (170)
60 1r2q_A RAS-related protein RAB 99.2 1.9E-11 6.6E-16 118.6 9.4 104 18-151 5-124 (170)
61 2ew1_A RAS-related protein RAB 99.2 1.6E-11 5.5E-16 124.2 8.8 110 12-151 19-144 (201)
62 1u8z_A RAS-related protein RAL 99.2 1E-10 3.6E-15 113.0 14.3 103 18-151 3-122 (168)
63 4bas_A ADP-ribosylation factor 99.2 1.7E-11 5.7E-16 122.8 8.9 103 16-151 14-140 (199)
64 2p67_A LAO/AO transport system 99.2 4.4E-11 1.5E-15 131.2 13.0 53 96-151 147-207 (341)
65 1vg8_A RAS-related protein RAB 99.2 3.1E-11 1.1E-15 121.7 10.5 107 15-151 4-130 (207)
66 2efe_B Small GTP-binding prote 99.2 2E-11 6.9E-16 120.2 8.7 105 17-151 10-130 (181)
67 2hup_A RAS-related protein RAB 99.2 5.7E-11 2E-15 119.9 12.3 105 17-151 27-147 (201)
68 1fzq_A ADP-ribosylation factor 99.2 6.5E-11 2.2E-15 117.3 12.5 108 9-151 6-130 (181)
69 2a9k_A RAS-related protein RAL 99.2 1.1E-10 3.9E-15 115.1 14.1 105 16-151 15-136 (187)
70 2g6b_A RAS-related protein RAB 99.2 2.3E-11 7.8E-16 119.6 9.0 106 17-151 8-129 (180)
71 2oil_A CATX-8, RAS-related pro 99.2 2.1E-11 7.1E-16 121.8 8.8 105 17-151 23-143 (193)
72 4dhe_A Probable GTP-binding pr 99.2 2.4E-11 8.3E-16 124.3 9.4 105 17-151 27-157 (223)
73 1upt_A ARL1, ADP-ribosylation 99.2 2.6E-11 8.8E-16 118.1 8.7 99 18-151 6-121 (171)
74 4dcu_A GTP-binding protein ENG 99.2 2.4E-11 8.3E-16 138.7 9.9 103 18-151 194-319 (456)
75 2hxs_A RAB-26, RAS-related pro 99.2 6.2E-11 2.1E-15 116.3 11.4 106 17-151 4-128 (178)
76 3a1s_A Iron(II) transport prot 99.2 2.7E-11 9.3E-16 127.5 9.3 103 17-151 3-123 (258)
77 1g16_A RAS-related protein SEC 99.2 3E-11 1E-15 117.4 8.9 104 18-151 2-121 (170)
78 1kao_A RAP2A; GTP-binding prot 99.2 6.6E-11 2.2E-15 114.3 11.2 101 20-151 4-121 (167)
79 1zbd_A Rabphilin-3A; G protein 99.2 4.4E-11 1.5E-15 120.4 10.1 105 17-151 6-126 (203)
80 2fg5_A RAB-22B, RAS-related pr 99.2 4.6E-11 1.6E-15 119.4 9.5 105 17-151 21-141 (192)
81 1x3s_A RAS-related protein RAB 99.2 4.9E-11 1.7E-15 118.8 9.7 105 17-151 13-134 (195)
82 1z2a_A RAS-related protein RAB 99.2 2.6E-11 9E-16 117.5 7.5 105 17-151 3-122 (168)
83 1h65_A Chloroplast outer envel 99.2 1E-10 3.5E-15 123.9 12.7 104 17-151 37-167 (270)
84 1z06_A RAS-related protein RAB 99.2 3.4E-11 1.2E-15 119.9 8.4 105 17-151 18-140 (189)
85 1c1y_A RAS-related protein RAP 99.2 1E-10 3.5E-15 113.2 11.6 102 19-151 3-121 (167)
86 2gf9_A RAS-related protein RAB 99.2 3E-11 1E-15 120.3 7.9 104 18-151 21-140 (189)
87 2fu5_C RAS-related protein RAB 99.2 1.3E-11 4.4E-16 122.0 5.2 105 17-151 6-126 (183)
88 3t1o_A Gliding protein MGLA; G 99.2 5.5E-11 1.9E-15 118.5 9.8 116 17-151 12-148 (198)
89 3bc1_A RAS-related protein RAB 99.2 6.5E-11 2.2E-15 117.6 10.2 115 17-151 9-140 (195)
90 2erx_A GTP-binding protein DI- 99.2 1.3E-10 4.5E-15 112.9 12.2 102 19-151 3-122 (172)
91 2bcg_Y Protein YP2, GTP-bindin 99.2 1.8E-11 6.1E-16 123.7 6.1 106 16-151 5-126 (206)
92 3cph_A RAS-related protein SEC 99.2 5.2E-11 1.8E-15 120.7 9.6 104 18-151 19-138 (213)
93 3kkq_A RAS-related protein M-R 99.2 8.4E-11 2.9E-15 116.1 10.8 104 17-151 16-136 (183)
94 2bov_A RAla, RAS-related prote 99.2 2.1E-10 7.2E-15 115.4 14.0 104 17-151 12-132 (206)
95 1ksh_A ARF-like protein 2; sma 99.2 3E-11 1E-15 119.8 7.5 100 17-151 16-132 (186)
96 1zj6_A ADP-ribosylation factor 99.2 7.5E-11 2.6E-15 117.2 10.4 100 17-151 14-130 (187)
97 2gf0_A GTP-binding protein DI- 99.2 1.4E-10 4.7E-15 116.1 12.4 108 13-151 2-127 (199)
98 1z08_A RAS-related protein RAB 99.2 5.5E-11 1.9E-15 115.6 9.2 105 17-151 4-124 (170)
99 1mky_A Probable GTP-binding pr 99.2 6.5E-11 2.2E-15 134.4 11.2 101 20-151 2-123 (439)
100 3clv_A RAB5 protein, putative; 99.2 9.3E-11 3.2E-15 117.3 11.1 52 98-149 93-158 (208)
101 1z0j_A RAB-22, RAS-related pro 99.2 7.2E-11 2.5E-15 114.6 9.8 104 18-151 5-124 (170)
102 1m2o_B GTP-binding protein SAR 99.2 7.3E-11 2.5E-15 118.0 9.9 99 18-151 22-137 (190)
103 2wjg_A FEOB, ferrous iron tran 99.2 1.3E-10 4.4E-15 115.3 11.6 102 18-151 6-125 (188)
104 2h57_A ADP-ribosylation factor 99.1 8.1E-11 2.8E-15 117.2 9.9 101 18-151 20-139 (190)
105 1jwy_B Dynamin A GTPase domain 99.1 1.6E-10 5.5E-15 125.0 12.9 55 97-151 130-211 (315)
106 2f7s_A C25KG, RAS-related prot 99.1 6.6E-11 2.3E-15 120.5 9.3 115 17-151 23-154 (217)
107 1f6b_A SAR1; gtpases, N-termin 99.1 8.4E-11 2.9E-15 118.4 9.7 100 17-151 23-139 (198)
108 2ce2_X GTPase HRAS; signaling 99.1 1.9E-10 6.4E-15 110.8 11.7 101 20-151 4-121 (166)
109 2a5j_A RAS-related protein RAB 99.1 4.4E-11 1.5E-15 119.4 7.3 104 18-151 20-139 (191)
110 2ged_A SR-beta, signal recogni 99.1 7.9E-11 2.7E-15 117.4 9.1 117 17-173 46-188 (193)
111 2wji_A Ferrous iron transport 99.1 1.2E-10 4.1E-15 113.4 10.1 101 19-151 3-121 (165)
112 1nrj_B SR-beta, signal recogni 99.1 2.6E-10 8.7E-15 116.2 12.8 115 17-171 10-150 (218)
113 4dsu_A GTPase KRAS, isoform 2B 99.1 9.8E-11 3.3E-15 115.9 9.3 102 19-151 4-122 (189)
114 2o52_A RAS-related protein RAB 99.1 4.3E-11 1.5E-15 120.6 6.8 105 17-151 23-143 (200)
115 2gj8_A MNME, tRNA modification 99.1 1.6E-10 5.4E-15 113.6 10.6 101 20-151 5-128 (172)
116 2b6h_A ADP-ribosylation factor 99.1 1.3E-10 4.3E-15 116.4 9.9 100 17-151 27-143 (192)
117 2nzj_A GTP-binding protein REM 99.1 1E-10 3.6E-15 114.2 8.8 103 18-151 3-124 (175)
118 3dz8_A RAS-related protein RAB 99.1 4.4E-11 1.5E-15 119.4 6.1 105 17-151 21-141 (191)
119 3reg_A RHO-like small GTPase; 99.1 1.8E-10 6.3E-15 115.1 10.6 104 17-151 21-140 (194)
120 3oes_A GTPase rhebl1; small GT 99.1 8.1E-11 2.8E-15 118.5 7.9 104 17-151 22-142 (201)
121 3lxx_A GTPase IMAP family memb 99.1 1.1E-10 3.9E-15 121.2 9.2 105 17-151 27-158 (239)
122 2h17_A ADP-ribosylation factor 99.1 8E-11 2.7E-15 116.4 7.7 99 18-151 20-135 (181)
123 3gj0_A GTP-binding nuclear pro 99.1 9.3E-11 3.2E-15 120.0 8.2 104 17-151 13-132 (221)
124 3llu_A RAS-related GTP-binding 99.1 3.6E-10 1.2E-14 113.4 12.3 105 17-151 18-142 (196)
125 3t5g_A GTP-binding protein RHE 99.1 6.9E-11 2.4E-15 116.5 6.7 103 18-151 5-124 (181)
126 4gzl_A RAS-related C3 botulinu 99.1 7.5E-11 2.6E-15 119.3 6.9 104 17-151 28-147 (204)
127 1moz_A ARL1, ADP-ribosylation 99.1 1.1E-10 3.8E-15 115.1 7.8 100 17-151 16-132 (183)
128 3q85_A GTP-binding protein REM 99.1 1.9E-10 6.6E-15 111.7 9.4 103 19-151 2-122 (169)
129 4djt_A GTP-binding nuclear pro 99.1 6.7E-11 2.3E-15 120.6 6.3 109 14-151 6-130 (218)
130 3q72_A GTP-binding protein RAD 99.1 8.7E-11 3E-15 113.8 6.6 101 19-151 2-119 (166)
131 2hjg_A GTP-binding protein ENG 99.1 6.4E-11 2.2E-15 134.3 6.2 101 20-151 4-124 (436)
132 3o47_A ADP-ribosylation factor 99.1 1.9E-10 6.6E-15 125.4 9.6 97 20-151 166-279 (329)
133 1mh1_A RAC1; GTP-binding, GTPa 99.1 8.4E-11 2.9E-15 116.1 6.2 102 19-151 5-122 (186)
134 2x77_A ADP-ribosylation factor 99.1 3.8E-11 1.3E-15 119.4 3.6 99 18-151 21-136 (189)
135 3r7w_A Gtpase1, GTP-binding pr 99.1 2.1E-10 7.1E-15 124.0 9.3 102 20-151 4-128 (307)
136 3cpj_B GTP-binding protein YPT 99.1 6.6E-11 2.3E-15 121.4 5.1 105 17-151 11-131 (223)
137 3con_A GTPase NRAS; structural 99.1 3.6E-10 1.2E-14 112.3 10.1 102 19-151 21-139 (190)
138 2yc2_C IFT27, small RAB-relate 99.1 1.5E-10 5.3E-15 116.5 7.5 105 19-151 20-145 (208)
139 1svi_A GTP-binding protein YSX 99.1 4.4E-10 1.5E-14 112.1 10.7 102 17-151 21-147 (195)
140 3l0i_B RAS-related protein RAB 99.1 5.9E-12 2E-16 126.7 -3.1 105 17-151 31-151 (199)
141 4dcu_A GTP-binding protein ENG 99.1 6.8E-11 2.3E-15 135.0 5.0 103 18-151 22-144 (456)
142 2atv_A RERG, RAS-like estrogen 99.1 1.2E-09 3.9E-14 109.5 13.4 103 17-151 26-145 (196)
143 3t5d_A Septin-7; GTP-binding p 99.1 1.1E-09 3.8E-14 116.3 13.9 111 19-151 8-157 (274)
144 3pqc_A Probable GTP-binding pr 99.0 7E-10 2.4E-14 110.3 11.4 101 17-151 21-146 (195)
145 3b1v_A Ferrous iron uptake tra 99.0 1.6E-10 5.6E-15 122.4 7.2 100 19-151 3-120 (272)
146 3gee_A MNME, tRNA modification 99.0 2E-10 6.7E-15 131.1 8.2 101 20-151 234-356 (476)
147 2fv8_A H6, RHO-related GTP-bin 99.0 3.5E-10 1.2E-14 114.5 8.9 103 18-151 24-142 (207)
148 1m7b_A RND3/RHOE small GTP-bin 99.0 7.9E-10 2.7E-14 109.5 11.3 104 17-151 5-124 (184)
149 2atx_A Small GTP binding prote 99.0 3.1E-10 1.1E-14 113.2 8.5 103 18-151 17-135 (194)
150 3geh_A MNME, tRNA modification 99.0 1.4E-10 5E-15 131.7 6.6 101 20-151 225-343 (462)
151 2j0v_A RAC-like GTP-binding pr 99.0 7.6E-10 2.6E-14 112.2 11.1 103 18-151 8-126 (212)
152 2j1l_A RHO-related GTP-binding 99.0 4.6E-10 1.6E-14 114.4 9.4 103 18-151 33-151 (214)
153 2gco_A H9, RHO-related GTP-bin 99.0 4.5E-10 1.5E-14 113.1 8.9 102 19-151 25-142 (201)
154 3bwd_D RAC-like GTP-binding pr 99.0 1.8E-10 6.1E-15 113.4 5.6 103 18-151 7-125 (182)
155 2q3h_A RAS homolog gene family 99.0 3.7E-10 1.3E-14 113.4 7.3 104 17-151 18-137 (201)
156 1mky_A Probable GTP-binding pr 99.0 8.1E-10 2.8E-14 125.4 10.9 103 18-151 179-305 (439)
157 1gwn_A RHO-related GTP-binding 99.0 7.5E-10 2.6E-14 112.2 9.4 104 17-151 26-145 (205)
158 3c5c_A RAS-like protein 12; GD 99.0 2E-09 6.8E-14 107.1 12.3 103 17-151 19-140 (187)
159 2qu8_A Putative nucleolar GTP- 99.0 1.6E-09 5.3E-14 111.6 11.3 103 17-151 27-155 (228)
160 1xzp_A Probable tRNA modificat 99.0 4.2E-10 1.4E-14 128.5 7.1 101 20-151 244-363 (482)
161 2qpt_A EH domain-containing pr 99.0 1.8E-09 6.2E-14 125.5 11.7 54 98-151 154-231 (550)
162 3q3j_B RHO-related GTP-binding 99.0 1.6E-09 5.5E-14 110.4 10.0 103 18-151 26-144 (214)
163 3th5_A RAS-related C3 botulinu 98.5 9.9E-11 3.4E-15 118.1 0.0 104 17-151 28-147 (204)
164 3ihw_A Centg3; RAS, centaurin, 98.9 7.7E-09 2.6E-13 102.6 13.7 98 17-151 18-132 (184)
165 3cbq_A GTP-binding protein REM 98.9 4E-09 1.4E-13 105.8 11.1 105 17-151 21-143 (195)
166 2iwr_A Centaurin gamma 1; ANK 98.9 6.5E-09 2.2E-13 101.9 12.4 97 18-151 6-121 (178)
167 3lvq_E ARF-GAP with SH3 domain 98.9 1.9E-09 6.6E-14 124.3 9.3 99 18-151 321-436 (497)
168 4dkx_A RAS-related protein RAB 98.9 5.6E-09 1.9E-13 106.7 11.6 103 19-151 13-131 (216)
169 2aka_B Dynamin-1; fusion prote 98.9 3.1E-09 1.1E-13 113.8 10.0 55 97-151 124-205 (299)
170 2cxx_A Probable GTP-binding pr 98.8 5.2E-09 1.8E-13 103.5 8.0 22 20-41 2-23 (190)
171 2wkq_A NPH1-1, RAS-related C3 98.8 6.3E-09 2.1E-13 112.9 8.9 104 17-151 153-272 (332)
172 3p32_A Probable GTPase RV1496/ 98.8 8.8E-09 3E-13 113.5 9.2 53 96-151 170-230 (355)
173 2qtf_A Protein HFLX, GTP-bindi 98.8 2.7E-08 9.4E-13 109.7 12.9 102 18-151 178-305 (364)
174 3t34_A Dynamin-related protein 98.8 1.7E-08 5.8E-13 111.4 10.8 55 97-151 135-216 (360)
175 2j69_A Bacterial dynamin-like 98.8 1.5E-08 5.1E-13 121.1 10.7 54 98-151 174-243 (695)
176 3dpu_A RAB family protein; roc 98.8 6.9E-09 2.3E-13 120.8 7.6 114 16-151 38-163 (535)
177 2zej_A Dardarin, leucine-rich 98.8 8.7E-09 3E-13 102.0 7.0 107 20-151 3-125 (184)
178 2f9l_A RAB11B, member RAS onco 98.7 1.4E-08 4.8E-13 101.9 8.3 103 19-151 5-123 (199)
179 2qag_A Septin-2, protein NEDD5 98.7 1.1E-08 3.7E-13 113.0 8.0 112 19-151 37-187 (361)
180 4a9a_A Ribosome-interacting GT 98.7 1.1E-08 3.8E-13 112.6 7.9 100 20-151 73-195 (376)
181 1lnz_A SPO0B-associated GTP-bi 98.7 6.3E-09 2.2E-13 113.7 5.4 102 19-151 158-287 (342)
182 2e87_A Hypothetical protein PH 98.7 2.8E-08 9.5E-13 109.6 9.4 103 17-151 165-293 (357)
183 2g3y_A GTP-binding protein GEM 98.7 3E-08 1E-12 101.0 8.6 106 17-151 35-158 (211)
184 2cjw_A GTP-binding protein GEM 98.6 5.8E-08 2E-12 97.0 8.4 105 18-151 5-127 (192)
185 2wsm_A Hydrogenase expression/ 98.6 6.7E-08 2.3E-12 98.5 8.9 127 17-151 28-167 (221)
186 2j37_W Signal recognition part 98.6 3.9E-08 1.3E-12 112.4 6.8 139 7-151 81-253 (504)
187 1wxq_A GTP-binding protein; st 98.6 3.6E-08 1.2E-12 110.0 6.3 36 97-132 70-112 (397)
188 1oix_A RAS-related protein RAB 98.6 6.5E-08 2.2E-12 96.5 7.5 104 18-151 28-147 (191)
189 2x2e_A Dynamin-1; nitration, h 98.6 9.2E-08 3.2E-12 105.2 9.3 26 18-43 30-55 (353)
190 3r7w_B Gtpase2, GTP-binding pr 98.5 7.8E-08 2.7E-12 103.5 5.5 99 21-151 1-119 (331)
191 1pui_A ENGB, probable GTP-bind 98.5 2.3E-07 7.9E-12 93.5 7.8 101 18-151 25-150 (210)
192 1jal_A YCHF protein; nucleotid 98.4 3.1E-07 1.1E-11 100.6 7.5 111 20-151 3-122 (363)
193 3zvr_A Dynamin-1; hydrolase, D 98.4 8.4E-07 2.9E-11 105.5 10.6 25 18-42 50-74 (772)
194 2www_A Methylmalonic aciduria 98.3 8.1E-07 2.8E-11 97.4 9.3 53 96-151 165-225 (349)
195 1udx_A The GTP-binding protein 98.3 1.2E-06 4.1E-11 97.9 8.5 101 20-151 158-282 (416)
196 1yrb_A ATP(GTP)binding protein 98.2 2.9E-06 1E-10 88.6 9.8 54 97-151 108-184 (262)
197 3ec1_A YQEH GTPase; atnos1, at 98.2 8E-07 2.8E-11 98.2 5.5 104 19-151 162-287 (369)
198 2ohf_A Protein OLA1, GTP-bindi 98.1 2.4E-06 8.2E-11 94.4 6.9 106 12-133 15-128 (396)
199 3h2y_A GTPase family protein; 98.1 3.2E-06 1.1E-10 93.3 6.2 103 20-151 161-286 (368)
200 2qm8_A GTPase/ATPase; G protei 98.0 2.2E-06 7.4E-11 93.5 4.5 53 96-151 146-206 (337)
201 3c5h_A Glucocorticoid receptor 98.0 1.5E-06 5.3E-11 90.9 2.7 24 18-41 18-50 (255)
202 2dby_A GTP-binding protein; GD 98.0 8.1E-06 2.8E-10 89.8 8.2 109 20-150 2-124 (368)
203 2v3c_C SRP54, signal recogniti 98.0 9.2E-06 3.1E-10 91.3 8.0 56 96-151 179-251 (432)
204 2xxa_A Signal recognition part 97.9 1E-05 3.5E-10 90.9 7.3 126 18-151 99-253 (433)
205 1ni3_A YCHF GTPase, YCHF GTP-b 97.9 2.1E-05 7.1E-10 87.1 9.0 107 12-133 13-127 (392)
206 3sop_A Neuronal-specific septi 97.9 7.6E-05 2.6E-09 78.6 12.6 24 20-43 3-26 (270)
207 2qag_B Septin-6, protein NEDD5 97.8 4.2E-05 1.4E-09 85.2 10.2 26 17-42 40-65 (427)
208 2qag_C Septin-7; cell cycle, c 97.8 4.8E-05 1.6E-09 85.0 10.4 22 20-41 32-53 (418)
209 2hf9_A Probable hydrogenase ni 97.8 3E-05 1E-09 78.9 7.3 27 17-43 36-62 (226)
210 3dm5_A SRP54, signal recogniti 97.8 8.7E-05 3E-09 83.1 11.0 125 19-151 100-252 (443)
211 3kl4_A SRP54, signal recogniti 97.7 4.2E-05 1.4E-09 85.6 8.4 56 96-151 178-251 (433)
212 2qnr_A Septin-2, protein NEDD5 97.7 0.00012 3.9E-09 78.5 10.1 21 20-40 19-39 (301)
213 1j8m_F SRP54, signal recogniti 97.6 8.8E-05 3E-09 79.2 8.5 125 19-151 98-252 (297)
214 1f5n_A Interferon-induced guan 97.4 0.00018 6.2E-09 83.5 7.0 40 4-43 23-62 (592)
215 3e1y_E Eukaryotic peptide chai 97.3 0.00022 7.5E-09 71.7 6.2 84 361-460 4-90 (204)
216 1zu4_A FTSY; GTPase, signal re 97.2 0.00058 2E-08 73.6 8.5 24 19-42 105-128 (320)
217 1puj_A YLQF, conserved hypothe 97.1 0.00043 1.5E-08 73.3 5.8 26 18-43 119-144 (282)
218 3e70_C DPA, signal recognition 96.9 0.0019 6.5E-08 69.7 8.9 126 19-151 129-281 (328)
219 3cnl_A YLQF, putative uncharac 96.8 0.00056 1.9E-08 71.6 3.7 23 20-42 100-122 (262)
220 2yhs_A FTSY, cell division pro 96.8 0.0016 5.6E-08 73.5 7.6 23 20-42 294-316 (503)
221 1vma_A Cell division protein F 96.8 0.0032 1.1E-07 67.3 9.5 37 6-42 84-127 (306)
222 1cip_A Protein (guanine nucleo 96.8 0.0012 4.2E-08 72.0 6.2 37 97-133 192-228 (353)
223 2px0_A Flagellar biosynthesis 96.7 0.0011 3.9E-08 70.5 5.1 25 18-42 104-128 (296)
224 3szr_A Interferon-induced GTP- 96.7 0.0026 8.9E-08 74.7 8.7 24 18-41 44-67 (608)
225 3q5d_A Atlastin-1; G protein, 96.7 0.0064 2.2E-07 68.2 11.3 40 3-42 47-90 (447)
226 3ohm_A Guanine nucleotide-bind 96.6 0.0015 5.2E-08 70.3 5.3 36 97-132 166-201 (327)
227 1tq4_A IIGP1, interferon-induc 96.6 0.0024 8.2E-08 71.0 6.9 106 19-153 69-190 (413)
228 2ffh_A Protein (FFH); SRP54, s 96.6 0.002 6.9E-08 71.9 6.1 125 19-151 98-250 (425)
229 1zcb_A G alpha I/13; GTP-bindi 96.6 0.0013 4.5E-08 72.1 4.4 37 97-133 200-236 (362)
230 1rj9_A FTSY, signal recognitio 96.5 0.002 6.8E-08 68.9 5.5 24 19-42 102-125 (304)
231 4fid_A G protein alpha subunit 96.5 0.0015 5.1E-08 70.7 4.6 36 97-132 160-195 (340)
232 3cwq_A Para family chromosome 96.4 0.012 4E-07 59.1 10.2 53 97-151 67-133 (209)
233 4dzz_A Plasmid partitioning pr 96.2 0.0051 1.7E-07 61.0 6.0 53 97-151 75-143 (206)
234 1azs_C GS-alpha; complex (lyas 96.2 0.0027 9.1E-08 70.3 4.1 37 97-133 216-252 (402)
235 1ls1_A Signal recognition part 96.1 0.0055 1.9E-07 65.2 6.2 55 97-151 180-250 (295)
236 2cve_A Hypothetical protein TT 96.0 0.015 5.2E-07 56.9 8.0 110 667-783 80-190 (191)
237 1vi7_A Hypothetical protein YI 96.0 0.011 3.7E-07 59.2 6.8 112 667-784 92-203 (217)
238 2xtz_A Guanine nucleotide-bind 95.5 0.0048 1.6E-07 67.3 2.5 37 96-132 181-217 (354)
239 3end_A Light-independent proto 94.7 0.043 1.5E-06 58.3 7.1 37 96-133 155-191 (307)
240 1puj_A YLQF, conserved hypothe 94.7 0.024 8.3E-07 59.7 4.9 49 103-151 4-63 (282)
241 1nij_A Hypothetical protein YJ 94.5 0.086 2.9E-06 56.4 8.8 26 17-42 2-27 (318)
242 1t9h_A YLOQ, probable GTPase E 94.4 0.015 5.2E-07 62.0 2.5 21 20-40 174-194 (307)
243 4ido_A Atlastin-1; GTPase, GTP 93.6 0.14 4.9E-06 57.0 8.5 40 3-42 47-90 (457)
244 1u0l_A Probable GTPase ENGC; p 93.5 0.013 4.5E-07 62.4 -0.2 51 99-151 64-128 (301)
245 3ec1_A YQEH GTPase; atnos1, at 93.1 0.11 3.8E-06 56.8 6.7 52 99-151 50-111 (369)
246 2yv5_A YJEQ protein; hydrolase 92.8 0.11 3.8E-06 55.1 5.9 21 20-40 166-186 (302)
247 1ye8_A Protein THEP1, hypothet 92.6 0.065 2.2E-06 52.2 3.4 24 21-44 2-25 (178)
248 3lh2_S 4E10_1VI7A_S0_002_N (T8 92.4 0.11 3.6E-06 43.1 4.0 62 719-783 9-70 (76)
249 1kgd_A CASK, peripheral plasma 92.4 0.072 2.5E-06 51.8 3.4 24 20-43 6-29 (180)
250 1lvg_A Guanylate kinase, GMP k 92.3 0.062 2.1E-06 53.2 2.8 23 20-42 5-27 (198)
251 1zp6_A Hypothetical protein AT 92.1 0.086 2.9E-06 51.3 3.7 25 17-41 7-31 (191)
252 3cnl_A YLQF, putative uncharac 91.9 0.069 2.4E-06 55.5 2.8 46 106-151 5-59 (262)
253 3a00_A Guanylate kinase, GMP k 91.9 0.069 2.4E-06 52.2 2.7 24 20-43 2-25 (186)
254 3c8u_A Fructokinase; YP_612366 91.7 0.15 5.1E-06 50.7 4.9 26 17-42 20-45 (208)
255 1knq_A Gluconate kinase; ALFA/ 91.6 0.13 4.3E-06 49.4 4.2 27 18-44 7-33 (175)
256 4eun_A Thermoresistant glucoki 91.4 0.12 4.1E-06 51.0 3.8 36 9-45 20-55 (200)
257 3tr0_A Guanylate kinase, GMP k 91.3 0.1 3.5E-06 51.4 3.3 24 20-43 8-31 (205)
258 3h2y_A GTPase family protein; 91.3 0.28 9.4E-06 53.6 7.0 44 108-151 56-109 (368)
259 1u0l_A Probable GTPase ENGC; p 91.3 0.1 3.6E-06 55.3 3.5 21 20-40 170-190 (301)
260 1znw_A Guanylate kinase, GMP k 91.1 0.11 3.6E-06 51.8 3.2 25 19-43 20-44 (207)
261 1htw_A HI0065; nucleotide-bind 91.0 0.12 4E-06 49.4 3.2 26 18-43 32-57 (158)
262 1xjc_A MOBB protein homolog; s 90.8 0.14 4.8E-06 49.4 3.5 25 18-42 3-27 (169)
263 3kb2_A SPBC2 prophage-derived 90.7 0.14 4.8E-06 48.7 3.5 25 20-44 2-26 (173)
264 3asz_A Uridine kinase; cytidin 90.7 0.16 5.3E-06 50.4 3.9 25 18-42 5-29 (211)
265 1kag_A SKI, shikimate kinase I 90.7 0.13 4.6E-06 49.0 3.3 25 20-44 5-29 (173)
266 3lw7_A Adenylate kinase relate 90.5 0.16 5.6E-06 48.1 3.8 24 20-44 2-25 (179)
267 1uf9_A TT1252 protein; P-loop, 90.5 0.2 6.7E-06 49.2 4.4 26 17-42 6-31 (203)
268 1z6g_A Guanylate kinase; struc 90.5 0.13 4.5E-06 51.7 3.2 24 20-43 24-47 (218)
269 3ney_A 55 kDa erythrocyte memb 90.5 0.15 5.2E-06 50.5 3.6 26 18-43 18-43 (197)
270 2bbw_A Adenylate kinase 4, AK4 90.3 0.17 5.9E-06 51.6 4.0 28 19-46 27-54 (246)
271 3tau_A Guanylate kinase, GMP k 90.3 0.15 5.2E-06 50.7 3.5 25 19-43 8-32 (208)
272 4g1u_C Hemin import ATP-bindin 90.2 0.19 6.6E-06 52.3 4.2 20 20-39 38-57 (266)
273 1s96_A Guanylate kinase, GMP k 90.1 0.16 5.6E-06 51.2 3.5 25 19-43 16-40 (219)
274 4gp7_A Metallophosphoesterase; 90.1 0.14 4.9E-06 49.2 2.9 20 20-39 10-29 (171)
275 1np6_A Molybdopterin-guanine d 90.0 0.19 6.5E-06 48.8 3.7 24 19-42 6-29 (174)
276 2c95_A Adenylate kinase 1; tra 90.0 0.21 7.3E-06 48.5 4.2 26 19-44 9-34 (196)
277 2f1r_A Molybdopterin-guanine d 89.8 0.098 3.4E-06 50.6 1.5 23 20-42 3-25 (171)
278 3t61_A Gluconokinase; PSI-biol 89.8 0.18 6.1E-06 49.7 3.4 26 19-44 18-43 (202)
279 1mv5_A LMRA, multidrug resista 89.8 0.24 8.2E-06 50.7 4.5 31 20-54 29-59 (243)
280 2j41_A Guanylate kinase; GMP, 89.7 0.18 6.2E-06 49.6 3.4 23 20-42 7-29 (207)
281 2bdt_A BH3686; alpha-beta prot 89.6 0.22 7.6E-06 48.4 3.9 22 20-41 3-24 (189)
282 2pcj_A ABC transporter, lipopr 89.4 0.18 6.1E-06 51.0 3.1 20 20-39 31-50 (224)
283 1ex7_A Guanylate kinase; subst 89.3 0.18 6.2E-06 49.5 3.0 24 20-43 2-25 (186)
284 3vaa_A Shikimate kinase, SK; s 89.3 0.23 8E-06 48.8 3.9 27 18-44 24-50 (199)
285 2if2_A Dephospho-COA kinase; a 89.3 0.19 6.6E-06 49.5 3.2 22 20-41 2-23 (204)
286 3tif_A Uncharacterized ABC tra 89.3 0.17 5.7E-06 51.7 2.8 20 20-39 32-51 (235)
287 1jjv_A Dephospho-COA kinase; P 88.9 0.22 7.4E-06 49.2 3.3 22 20-41 3-24 (206)
288 2qt1_A Nicotinamide riboside k 88.8 0.24 8.2E-06 49.0 3.6 26 16-41 18-43 (207)
289 3ec2_A DNA replication protein 88.8 0.2 6.8E-06 48.4 2.9 24 19-42 38-61 (180)
290 1zd8_A GTP:AMP phosphotransfer 88.8 0.27 9.2E-06 49.5 4.0 27 18-44 6-32 (227)
291 2jeo_A Uridine-cytidine kinase 88.7 0.21 7.2E-06 51.0 3.2 26 19-44 25-50 (245)
292 3trf_A Shikimate kinase, SK; a 88.7 0.26 8.8E-06 47.6 3.7 26 19-44 5-30 (185)
293 3b85_A Phosphate starvation-in 88.7 0.21 7.2E-06 49.9 3.0 23 20-42 23-45 (208)
294 2eyu_A Twitching motility prot 88.6 0.24 8.1E-06 51.4 3.4 26 17-42 23-48 (261)
295 3jvv_A Twitching mobility prot 88.5 0.31 1.1E-05 52.9 4.4 33 8-42 114-146 (356)
296 1cke_A CK, MSSA, protein (cyti 88.4 0.27 9.4E-06 49.1 3.7 25 20-44 6-30 (227)
297 1xe1_A Hypothetical protein PF 88.3 1.4 4.7E-05 39.3 7.6 48 381-443 50-97 (116)
298 2qor_A Guanylate kinase; phosp 88.3 0.23 8E-06 49.1 3.0 25 19-43 12-36 (204)
299 1ukz_A Uridylate kinase; trans 88.3 0.35 1.2E-05 47.5 4.3 28 17-44 13-40 (203)
300 2onk_A Molybdate/tungstate ABC 88.2 0.26 8.9E-06 50.4 3.4 20 20-39 25-44 (240)
301 2pze_A Cystic fibrosis transme 88.1 0.24 8.3E-06 50.2 3.1 20 20-39 35-54 (229)
302 1ly1_A Polynucleotide kinase; 88.1 0.27 9.2E-06 47.0 3.3 22 20-41 3-24 (181)
303 1g6h_A High-affinity branched- 88.1 0.22 7.6E-06 51.5 2.8 20 20-39 34-53 (257)
304 2i3b_A HCR-ntpase, human cance 88.0 0.27 9.3E-06 48.3 3.3 22 21-42 3-24 (189)
305 1b0u_A Histidine permease; ABC 88.0 0.23 7.8E-06 51.6 2.9 20 20-39 33-52 (262)
306 3aez_A Pantothenate kinase; tr 88.0 0.32 1.1E-05 51.8 4.1 26 17-42 88-113 (312)
307 2yv5_A YJEQ protein; hydrolase 88.0 0.087 3E-06 56.0 -0.4 44 108-151 66-123 (302)
308 3gfo_A Cobalt import ATP-bindi 88.0 0.23 7.9E-06 51.9 2.9 20 20-39 35-54 (275)
309 1nks_A Adenylate kinase; therm 87.9 0.3 1E-05 47.3 3.5 23 20-42 2-24 (194)
310 2cbz_A Multidrug resistance-as 87.9 0.25 8.6E-06 50.4 3.1 20 20-39 32-51 (237)
311 1odf_A YGR205W, hypothetical 3 87.9 0.49 1.7E-05 49.8 5.4 26 17-42 29-54 (290)
312 1sgw_A Putative ABC transporte 87.9 0.24 8.3E-06 49.7 2.9 19 21-39 37-55 (214)
313 3tlx_A Adenylate kinase 2; str 87.8 0.48 1.6E-05 48.4 5.1 29 17-45 27-55 (243)
314 2xj4_A MIPZ; replication, cell 87.8 0.97 3.3E-05 47.2 7.7 35 97-133 103-137 (286)
315 2v9p_A Replication protein E1; 87.8 0.36 1.2E-05 51.2 4.2 26 17-42 124-149 (305)
316 2bwj_A Adenylate kinase 5; pho 87.7 0.18 6.1E-06 49.3 1.7 25 20-44 13-37 (199)
317 1ji0_A ABC transporter; ATP bi 87.7 0.24 8.3E-06 50.6 2.8 20 20-39 33-52 (240)
318 2d2e_A SUFC protein; ABC-ATPas 87.7 0.27 9.3E-06 50.5 3.2 21 20-40 30-50 (250)
319 2ff7_A Alpha-hemolysin translo 87.5 0.27 9.3E-06 50.5 3.1 20 20-39 36-55 (247)
320 3lnc_A Guanylate kinase, GMP k 87.5 0.2 6.8E-06 50.6 2.0 21 20-40 28-48 (231)
321 2jaq_A Deoxyguanosine kinase; 87.5 0.35 1.2E-05 47.2 3.8 24 21-44 2-25 (205)
322 2ghi_A Transport protein; mult 87.3 0.28 9.7E-06 50.8 3.1 20 20-39 47-66 (260)
323 1rz3_A Hypothetical protein rb 87.2 0.43 1.5E-05 47.1 4.2 25 17-41 20-44 (201)
324 2olj_A Amino acid ABC transpor 87.2 0.29 9.9E-06 50.8 3.1 20 20-39 51-70 (263)
325 3fb4_A Adenylate kinase; psych 87.2 0.37 1.3E-05 47.8 3.8 25 21-45 2-26 (216)
326 3dl0_A Adenylate kinase; phosp 87.2 0.39 1.3E-05 47.7 3.9 25 21-45 2-26 (216)
327 3kta_A Chromosome segregation 87.2 0.34 1.2E-05 46.7 3.4 24 21-44 28-51 (182)
328 3cm0_A Adenylate kinase; ATP-b 87.1 0.41 1.4E-05 46.2 4.0 26 19-44 4-29 (186)
329 2qi9_C Vitamin B12 import ATP- 87.1 0.28 9.6E-06 50.5 2.9 20 20-39 27-46 (249)
330 1jbk_A CLPB protein; beta barr 87.1 0.57 2E-05 44.6 5.0 26 17-42 41-66 (195)
331 1vpl_A ABC transporter, ATP-bi 87.0 0.3 1E-05 50.4 3.1 20 20-39 42-61 (256)
332 2ehv_A Hypothetical protein PH 87.0 0.32 1.1E-05 49.2 3.3 22 19-40 30-51 (251)
333 1y63_A LMAJ004144AAA protein; 87.0 0.42 1.4E-05 46.3 4.0 25 18-42 9-33 (184)
334 2zu0_C Probable ATP-dependent 87.0 0.3 1E-05 50.8 3.0 21 20-40 47-67 (267)
335 2kjq_A DNAA-related protein; s 86.9 0.3 1E-05 45.9 2.8 25 18-42 35-59 (149)
336 1via_A Shikimate kinase; struc 86.8 0.34 1.2E-05 46.4 3.2 25 20-44 5-29 (175)
337 1qhx_A CPT, protein (chloramph 86.8 0.4 1.4E-05 45.8 3.7 25 20-44 4-28 (178)
338 4a74_A DNA repair and recombin 86.7 0.35 1.2E-05 48.2 3.3 37 6-42 11-48 (231)
339 2yz2_A Putative ABC transporte 86.7 0.29 1E-05 50.8 2.8 20 20-39 34-53 (266)
340 3uie_A Adenylyl-sulfate kinase 86.7 0.58 2E-05 46.0 4.8 25 18-42 24-48 (200)
341 2ihy_A ABC transporter, ATP-bi 86.6 0.33 1.1E-05 50.8 3.1 20 20-39 48-67 (279)
342 3tqc_A Pantothenate kinase; bi 86.6 0.39 1.3E-05 51.3 3.7 26 18-43 91-116 (321)
343 2gza_A Type IV secretion syste 86.5 0.3 1E-05 53.2 2.8 23 20-42 176-198 (361)
344 1tev_A UMP-CMP kinase; ploop, 86.5 0.45 1.5E-05 46.0 3.9 25 20-44 4-28 (196)
345 2oap_1 GSPE-2, type II secreti 86.5 0.27 9.3E-06 56.1 2.6 22 20-41 261-282 (511)
346 2rcn_A Probable GTPase ENGC; Y 86.5 0.35 1.2E-05 52.5 3.3 23 20-42 216-238 (358)
347 2nq2_C Hypothetical ABC transp 86.4 0.31 1.1E-05 50.2 2.8 20 20-39 32-51 (253)
348 2ixe_A Antigen peptide transpo 86.4 0.34 1.1E-05 50.5 3.1 20 20-39 46-65 (271)
349 2rhm_A Putative kinase; P-loop 86.3 0.5 1.7E-05 45.7 4.1 26 19-44 5-30 (193)
350 4e22_A Cytidylate kinase; P-lo 86.2 0.45 1.5E-05 48.9 3.9 27 19-45 27-53 (252)
351 1kht_A Adenylate kinase; phosp 86.1 0.38 1.3E-05 46.4 3.1 23 20-42 4-26 (192)
352 1wcv_1 SOJ, segregation protei 86.1 1.5 5.2E-05 44.7 7.9 36 96-133 110-145 (257)
353 3iij_A Coilin-interacting nucl 86.1 0.44 1.5E-05 45.8 3.5 27 18-44 10-36 (180)
354 3b9q_A Chloroplast SRP recepto 86.0 0.66 2.3E-05 49.1 5.2 23 20-42 101-123 (302)
355 1sq5_A Pantothenate kinase; P- 86.0 0.49 1.7E-05 50.2 4.2 26 17-42 78-103 (308)
356 1f2t_A RAD50 ABC-ATPase; DNA d 86.0 0.38 1.3E-05 45.2 3.0 23 21-43 25-47 (149)
357 2wwf_A Thymidilate kinase, put 85.9 0.37 1.3E-05 47.5 3.0 24 19-42 10-33 (212)
358 1uj2_A Uridine-cytidine kinase 85.9 0.5 1.7E-05 48.4 4.0 27 18-44 21-47 (252)
359 3umf_A Adenylate kinase; rossm 85.8 0.59 2E-05 47.0 4.4 30 17-46 27-56 (217)
360 2w58_A DNAI, primosome compone 85.7 0.66 2.3E-05 45.4 4.7 23 20-42 55-77 (202)
361 2pt7_A CAG-ALFA; ATPase, prote 85.5 0.29 9.9E-06 52.6 2.0 22 20-41 172-193 (330)
362 1zuh_A Shikimate kinase; alpha 85.5 0.51 1.8E-05 44.7 3.6 27 18-44 6-32 (168)
363 2ze6_A Isopentenyl transferase 85.4 0.55 1.9E-05 48.3 4.0 25 20-44 2-26 (253)
364 1qf9_A UMP/CMP kinase, protein 85.4 0.58 2E-05 45.1 4.1 25 20-44 7-31 (194)
365 2ewv_A Twitching motility prot 85.3 0.45 1.5E-05 52.0 3.5 24 19-42 136-159 (372)
366 1p9r_A General secretion pathw 85.2 0.66 2.3E-05 51.5 4.8 34 8-43 158-191 (418)
367 3bos_A Putative DNA replicatio 85.2 0.72 2.5E-05 46.0 4.8 25 18-42 51-75 (242)
368 2bbs_A Cystic fibrosis transme 85.1 0.44 1.5E-05 50.1 3.2 20 20-39 65-84 (290)
369 2pjz_A Hypothetical protein ST 85.0 0.44 1.5E-05 49.4 3.1 19 21-39 32-50 (263)
370 1t9h_A YLOQ, probable GTPase E 84.9 0.58 2E-05 49.7 4.0 35 117-151 82-130 (307)
371 2plr_A DTMP kinase, probable t 84.8 0.6 2E-05 45.8 3.9 25 20-44 5-29 (213)
372 2og2_A Putative signal recogni 84.8 0.81 2.8E-05 49.7 5.2 23 20-42 158-180 (359)
373 2v54_A DTMP kinase, thymidylat 84.7 0.48 1.6E-05 46.4 3.1 23 20-42 5-27 (204)
374 1tue_A Replication protein E1; 84.6 0.67 2.3E-05 46.1 4.0 36 7-42 46-81 (212)
375 2yvu_A Probable adenylyl-sulfa 84.5 0.6 2.1E-05 45.1 3.7 25 18-42 12-36 (186)
376 1aky_A Adenylate kinase; ATP:A 84.5 0.61 2.1E-05 46.5 3.8 26 19-44 4-29 (220)
377 2pbr_A DTMP kinase, thymidylat 84.4 0.51 1.7E-05 45.7 3.1 21 21-41 2-22 (195)
378 3tui_C Methionine import ATP-b 84.4 0.47 1.6E-05 51.6 3.0 21 20-40 55-75 (366)
379 2vli_A Antibiotic resistance p 84.3 0.5 1.7E-05 45.3 3.0 26 19-44 5-30 (183)
380 1gtv_A TMK, thymidylate kinase 84.3 0.29 1E-05 48.4 1.3 22 21-42 2-23 (214)
381 2wbm_A MTHSBDS, ribosome matur 84.2 1.6 5.5E-05 44.4 6.7 67 716-784 183-249 (252)
382 2pt5_A Shikimate kinase, SK; a 84.2 0.65 2.2E-05 43.9 3.7 24 21-44 2-25 (168)
383 3sr0_A Adenylate kinase; phosp 84.0 0.63 2.2E-05 46.3 3.7 27 21-47 2-28 (206)
384 3fvq_A Fe(3+) IONS import ATP- 83.9 0.49 1.7E-05 51.3 3.0 20 20-39 31-50 (359)
385 2p65_A Hypothetical protein PF 83.9 0.73 2.5E-05 43.8 4.0 26 17-42 41-66 (187)
386 1e4v_A Adenylate kinase; trans 83.9 0.69 2.3E-05 45.9 3.9 24 21-44 2-25 (214)
387 2cdn_A Adenylate kinase; phosp 83.8 0.75 2.6E-05 45.1 4.1 26 19-44 20-45 (201)
388 2pez_A Bifunctional 3'-phospho 83.8 0.6 2.1E-05 44.8 3.3 24 19-42 5-28 (179)
389 3nh6_A ATP-binding cassette SU 83.7 0.34 1.2E-05 51.4 1.6 20 20-39 81-100 (306)
390 2iyv_A Shikimate kinase, SK; t 83.7 0.52 1.8E-05 45.4 2.8 24 21-44 4-27 (184)
391 2x8a_A Nuclear valosin-contain 83.7 0.65 2.2E-05 48.4 3.7 24 20-43 45-68 (274)
392 1lw7_A Transcriptional regulat 83.7 0.5 1.7E-05 51.4 3.0 24 19-42 170-193 (365)
393 2f6r_A COA synthase, bifunctio 83.6 0.68 2.3E-05 48.4 3.8 23 18-40 74-96 (281)
394 1e6c_A Shikimate kinase; phosp 83.6 0.57 1.9E-05 44.5 3.0 25 20-44 3-27 (173)
395 1nn5_A Similar to deoxythymidy 83.5 0.64 2.2E-05 45.8 3.5 24 19-42 9-32 (215)
396 1vht_A Dephospho-COA kinase; s 83.4 0.68 2.3E-05 46.0 3.6 22 20-41 5-26 (218)
397 1njg_A DNA polymerase III subu 83.3 0.98 3.4E-05 44.7 4.8 36 8-43 34-69 (250)
398 2ph1_A Nucleotide-binding prot 83.2 1.5 5E-05 45.1 6.2 55 96-150 127-194 (262)
399 2grj_A Dephospho-COA kinase; T 83.1 0.92 3.2E-05 44.5 4.4 28 17-44 10-37 (192)
400 2w0m_A SSO2452; RECA, SSPF, un 83.1 0.74 2.5E-05 45.7 3.8 37 6-42 9-46 (235)
401 1ixz_A ATP-dependent metallopr 83.1 0.71 2.4E-05 47.1 3.7 24 20-43 50-73 (254)
402 2ga8_A Hypothetical 39.9 kDa p 83.0 1 3.5E-05 48.6 5.0 26 17-42 22-47 (359)
403 1z47_A CYSA, putative ABC-tran 83.0 0.57 1.9E-05 50.8 3.0 20 20-39 42-61 (355)
404 1zak_A Adenylate kinase; ATP:A 82.9 0.69 2.4E-05 46.2 3.5 26 19-44 5-30 (222)
405 2yyz_A Sugar ABC transporter, 82.8 0.55 1.9E-05 51.0 2.8 20 20-39 30-49 (359)
406 3nwj_A ATSK2; P loop, shikimat 82.7 0.64 2.2E-05 47.8 3.1 26 19-44 48-73 (250)
407 2vp4_A Deoxynucleoside kinase; 82.5 0.57 2E-05 47.2 2.7 24 18-41 19-42 (230)
408 2it1_A 362AA long hypothetical 82.5 0.58 2E-05 50.8 2.9 20 20-39 30-49 (362)
409 3qf7_A RAD50; ABC-ATPase, ATPa 82.4 0.65 2.2E-05 50.6 3.2 22 21-42 25-46 (365)
410 3rlf_A Maltose/maltodextrin im 82.2 0.61 2.1E-05 51.0 2.9 20 20-39 30-49 (381)
411 1v43_A Sugar-binding transport 82.1 0.62 2.1E-05 50.9 2.9 20 20-39 38-57 (372)
412 1ak2_A Adenylate kinase isoenz 82.1 0.9 3.1E-05 45.8 4.0 28 17-44 14-41 (233)
413 1g29_1 MALK, maltose transport 82.0 0.61 2.1E-05 50.9 2.8 20 20-39 30-49 (372)
414 1g3q_A MIND ATPase, cell divis 82.0 1.6 5.4E-05 43.7 5.8 54 96-151 110-176 (237)
415 3h4m_A Proteasome-activating n 82.0 1.1 3.6E-05 46.5 4.5 27 17-43 49-75 (285)
416 3a4m_A L-seryl-tRNA(SEC) kinas 81.9 0.98 3.4E-05 46.5 4.2 24 19-42 4-27 (260)
417 2z0h_A DTMP kinase, thymidylat 81.9 0.82 2.8E-05 44.3 3.4 22 21-42 2-23 (197)
418 1gvn_B Zeta; postsegregational 81.8 0.99 3.4E-05 47.3 4.3 26 18-43 32-57 (287)
419 2p5t_B PEZT; postsegregational 81.5 0.89 3E-05 46.6 3.7 27 18-44 31-57 (253)
420 2cvh_A DNA repair and recombin 81.3 1.2 4.1E-05 43.9 4.5 36 6-41 6-42 (220)
421 1iy2_A ATP-dependent metallopr 81.2 0.92 3.1E-05 47.1 3.7 24 20-43 74-97 (278)
422 1t95_A Hypothetical protein AF 81.2 2.1 7.1E-05 43.2 6.1 68 716-785 168-235 (240)
423 1q3t_A Cytidylate kinase; nucl 81.1 1 3.5E-05 45.5 3.9 28 17-44 14-41 (236)
424 3gd7_A Fusion complex of cysti 80.8 0.8 2.7E-05 50.3 3.2 20 20-39 48-67 (390)
425 1svm_A Large T antigen; AAA+ f 80.8 1.4 4.6E-05 48.2 5.0 26 17-42 167-192 (377)
426 3fkq_A NTRC-like two-domain pr 80.7 2.6 8.8E-05 45.8 7.3 36 96-133 258-293 (373)
427 3cf0_A Transitional endoplasmi 80.7 1.2 4.1E-05 46.8 4.5 27 17-43 47-73 (301)
428 3q9l_A Septum site-determining 80.6 1.8 6.1E-05 44.0 5.7 35 97-133 113-147 (260)
429 1hyq_A MIND, cell division inh 80.6 1.7 5.8E-05 44.4 5.5 53 97-151 110-175 (263)
430 2npi_A Protein CLP1; CLP1-PCF1 80.6 0.84 2.9E-05 51.3 3.3 24 19-42 138-161 (460)
431 2xb4_A Adenylate kinase; ATP-b 80.5 1.1 3.6E-05 45.0 3.8 24 21-44 2-25 (223)
432 3d31_A Sulfate/molybdate ABC t 80.4 0.53 1.8E-05 50.9 1.5 20 20-39 27-46 (348)
433 3kjh_A CO dehydrogenase/acetyl 80.3 1.2 4E-05 44.9 4.1 53 96-150 130-195 (254)
434 1lv7_A FTSH; alpha/beta domain 80.0 1 3.5E-05 45.9 3.6 25 19-43 45-69 (257)
435 3d3q_A TRNA delta(2)-isopenten 79.9 1.2 4E-05 47.9 4.0 25 20-44 8-32 (340)
436 1m7g_A Adenylylsulfate kinase; 79.9 0.97 3.3E-05 44.7 3.2 24 18-41 24-47 (211)
437 3ake_A Cytidylate kinase; CMP 79.8 1.1 3.7E-05 43.9 3.5 24 21-44 4-27 (208)
438 1cr0_A DNA primase/helicase; R 79.8 1.4 4.7E-05 46.1 4.6 34 9-42 25-58 (296)
439 3be4_A Adenylate kinase; malar 79.8 1.2 4.1E-05 44.3 3.9 25 20-44 6-30 (217)
440 3r20_A Cytidylate kinase; stru 79.5 1.2 4E-05 45.3 3.7 25 20-44 10-34 (233)
441 3foz_A TRNA delta(2)-isopenten 79.5 1.4 4.8E-05 46.6 4.4 28 17-44 8-35 (316)
442 1n0w_A DNA repair protein RAD5 79.1 1.2 4.1E-05 44.7 3.7 37 6-42 10-47 (243)
443 1hqc_A RUVB; extended AAA-ATPa 79.1 2.7 9.1E-05 44.2 6.6 26 18-43 37-62 (324)
444 3qks_A DNA double-strand break 78.9 1.1 3.7E-05 44.3 3.2 25 20-44 24-48 (203)
445 3la6_A Tyrosine-protein kinase 78.8 1.6 5.5E-05 45.7 4.7 54 97-151 201-267 (286)
446 3euj_A Chromosome partition pr 78.7 1 3.5E-05 50.8 3.2 23 20-42 30-52 (483)
447 2obl_A ESCN; ATPase, hydrolase 78.6 1.2 4.2E-05 48.0 3.8 24 20-43 72-95 (347)
448 1oxx_K GLCV, glucose, ABC tran 78.5 0.52 1.8E-05 51.1 0.8 20 20-39 32-51 (353)
449 1in4_A RUVB, holliday junction 78.4 1 3.5E-05 48.2 3.1 26 19-44 51-76 (334)
450 2qby_A CDC6 homolog 1, cell di 78.2 1.6 5.3E-05 47.0 4.5 26 17-42 43-68 (386)
451 1xwi_A SKD1 protein; VPS4B, AA 78.2 5 0.00017 42.5 8.5 25 19-43 45-69 (322)
452 3k9g_A PF-32 protein; ssgcid, 78.0 1.6 5.4E-05 44.8 4.3 54 96-151 143-210 (267)
453 1a7j_A Phosphoribulokinase; tr 77.5 0.75 2.6E-05 48.4 1.6 23 19-41 5-27 (290)
454 3crm_A TRNA delta(2)-isopenten 77.5 1.5 5.2E-05 46.7 4.0 25 20-44 6-30 (323)
455 1l8q_A Chromosomal replication 77.5 1.5 5.1E-05 46.5 4.0 35 8-42 25-60 (324)
456 3qkt_A DNA double-strand break 77.4 1.2 4.1E-05 47.8 3.2 22 21-42 25-46 (339)
457 1sxj_E Activator 1 40 kDa subu 77.3 1.3 4.3E-05 47.5 3.4 25 17-41 34-58 (354)
458 3bfv_A CAPA1, CAPB2, membrane 77.1 2.3 7.7E-05 44.1 5.1 54 97-151 191-257 (271)
459 4eaq_A DTMP kinase, thymidylat 76.9 1.8 6.3E-05 43.6 4.3 27 17-43 24-50 (229)
460 3l82_B F-box only protein 4; T 76.8 1.4 4.7E-05 44.0 3.1 35 99-133 97-137 (227)
461 2chg_A Replication factor C sm 76.5 2.3 7.8E-05 41.4 4.8 34 8-42 28-61 (226)
462 3b60_A Lipid A export ATP-bind 76.1 1.3 4.5E-05 51.3 3.3 20 20-39 370-389 (582)
463 2oze_A ORF delta'; para, walke 75.9 3.5 0.00012 42.9 6.3 36 96-133 153-188 (298)
464 3b5x_A Lipid A export ATP-bind 75.6 1.3 4.5E-05 51.3 3.1 21 20-40 370-390 (582)
465 1yqt_A RNAse L inhibitor; ATP- 75.6 1.3 4.5E-05 50.8 3.1 21 20-40 48-68 (538)
466 1ltq_A Polynucleotide kinase; 75.5 1.5 5.1E-05 45.9 3.3 23 20-42 3-25 (301)
467 1nlf_A Regulatory protein REPA 75.2 1.6 5.6E-05 45.2 3.5 22 20-41 31-52 (279)
468 3ozx_A RNAse L inhibitor; ATP 75.0 1.5 5.3E-05 50.2 3.4 22 18-39 24-45 (538)
469 2dpy_A FLII, flagellum-specifi 74.8 1.8 6E-05 48.4 3.8 25 19-43 157-181 (438)
470 3syl_A Protein CBBX; photosynt 74.7 2.7 9.2E-05 43.9 5.1 26 17-42 65-90 (309)
471 2zan_A Vacuolar protein sortin 74.5 9.4 0.00032 42.4 9.7 26 18-43 166-191 (444)
472 2qz4_A Paraplegin; AAA+, SPG7, 74.2 1.9 6.5E-05 43.8 3.6 25 19-43 39-63 (262)
473 3ea0_A ATPase, para family; al 74.1 2.7 9.2E-05 42.2 4.7 53 97-151 118-185 (245)
474 2kdo_A Ribosome maturation pro 73.8 0.98 3.3E-05 46.0 1.2 67 716-785 172-238 (252)
475 3j16_B RLI1P; ribosome recycli 73.7 1.5 5.2E-05 51.0 3.0 21 20-40 104-124 (608)
476 1d1n_A Initiation factor 2; be 73.7 7 0.00024 33.7 6.4 58 375-443 18-75 (99)
477 2yl4_A ATP-binding cassette SU 73.6 1.3 4.6E-05 51.4 2.5 20 20-39 371-390 (595)
478 3cr8_A Sulfate adenylyltranfer 73.6 2.3 7.7E-05 48.9 4.3 25 18-42 368-392 (552)
479 3b9p_A CG5977-PA, isoform A; A 73.6 1.9 6.5E-05 44.9 3.5 26 18-43 53-78 (297)
480 1yqt_A RNAse L inhibitor; ATP- 73.5 1.7 5.7E-05 49.9 3.3 21 20-40 313-333 (538)
481 2ocp_A DGK, deoxyguanosine kin 73.5 2 6.9E-05 43.3 3.6 24 20-43 3-26 (241)
482 1p5z_B DCK, deoxycytidine kina 73.5 1.2 4E-05 45.8 1.8 23 18-40 23-45 (263)
483 1e69_A Chromosome segregation 73.4 1.6 5.4E-05 46.5 2.8 24 21-44 26-49 (322)
484 3ozx_A RNAse L inhibitor; ATP 73.4 1.5 5.2E-05 50.2 2.9 19 21-39 296-314 (538)
485 3qf4_B Uncharacterized ABC tra 73.2 1.4 4.9E-05 51.2 2.7 20 20-39 382-401 (598)
486 1d2n_A N-ethylmaleimide-sensit 73.1 3.5 0.00012 42.3 5.4 26 17-42 62-87 (272)
487 3t15_A Ribulose bisphosphate c 72.9 2.6 8.7E-05 44.2 4.3 28 17-44 34-61 (293)
488 2v1u_A Cell division control p 72.8 2.3 7.8E-05 45.8 4.0 26 17-42 42-67 (387)
489 3bk7_A ABC transporter ATP-bin 72.4 1.8 6E-05 50.5 3.1 20 20-39 118-137 (607)
490 2dr3_A UPF0273 protein PH0284; 72.3 2.4 8.1E-05 42.5 3.8 24 19-42 23-46 (247)
491 2qmh_A HPR kinase/phosphorylas 72.3 2.2 7.6E-05 42.1 3.3 23 20-42 35-57 (205)
492 2fna_A Conserved hypothetical 72.2 3.1 0.00011 44.0 4.9 34 8-43 21-54 (357)
493 2o5v_A DNA replication and rep 72.1 2 6.7E-05 46.6 3.2 21 21-41 28-48 (359)
494 3eie_A Vacuolar protein sortin 71.8 3.7 0.00013 43.5 5.3 24 19-42 51-74 (322)
495 2z4s_A Chromosomal replication 71.5 2.7 9.2E-05 46.9 4.3 34 9-42 120-153 (440)
496 3bk7_A ABC transporter ATP-bin 71.5 2 6.8E-05 50.0 3.3 20 21-40 384-403 (607)
497 3n70_A Transport activator; si 71.5 2.6 9E-05 38.8 3.6 24 18-41 23-46 (145)
498 1w1w_A Structural maintenance 71.3 2.2 7.4E-05 47.4 3.5 26 20-45 27-52 (430)
499 3d8b_A Fidgetin-like protein 1 71.3 3.6 0.00012 44.4 5.1 26 18-43 116-141 (357)
500 1fnn_A CDC6P, cell division co 71.2 2.3 7.9E-05 45.9 3.6 25 19-43 44-68 (389)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=5.5e-154 Score=1402.29 Aligned_cols=828 Identities=62% Similarity=1.033 Sum_probs=738.7
Q ss_pred CccccHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEe
Q 003316 1 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80 (831)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~ 80 (831)
|++++.++|.++|.++.++|||+|+||+|||||||+++|++.+|.+.+...|.++++|+.++|++||+|+.++.+++.|.
T Consensus 1 ~~~~~~~~~~~~m~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~ 80 (842)
T 1n0u_A 1 MVAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 80 (842)
T ss_dssp --CBCHHHHHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEE
T ss_pred CcccCHHHHHHHhhCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEec
Confidence 78999999999999889999999999999999999999999999988765666789999999999999999999999986
Q ss_pred echhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecC
Q 003316 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKM 148 (831)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKi 148 (831)
.+......+....+++++.+||||||||.||..++.++++.+|+||+|||+++ +...+.|+++|+||+
T Consensus 81 ~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~ 160 (842)
T 1n0u_A 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKV 160 (842)
T ss_dssp CCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred ccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 21111111111223457899999999999999999999999999999999987 234466778899999
Q ss_pred cchhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHH
Q 003316 149 DRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 228 (831)
Q Consensus 149 D~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 228 (831)
|+...+++.+++++++.++++++++|..+..+.....+++.++|..++|+|+|+..||+|++.+|+..|+++|+++...+
T Consensus 161 D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l 240 (842)
T 1n0u_A 161 DRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKM 240 (842)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHH
T ss_pred CcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHH
Confidence 99988999999999999999999999998766544445566789999999999999999999999999999999999999
Q ss_pred HHHhhcccccCcCCCceeecC--CCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHH
Q 003316 229 MERLWGENFFDPATRKWTSRN--TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALM 306 (831)
Q Consensus 229 ~~~lw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~ 306 (831)
.+++||+.||+.++++|...+ .++...++.|++++++|+|+|++++++.|+++|++||+++|++++.+|++.+.++|+
T Consensus 241 ~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~ 320 (842)
T 1n0u_A 241 MDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALL 320 (842)
T ss_dssp HHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHH
T ss_pred HHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHH
Confidence 999999999988777776643 223345789999999999999999999999999999999999999999887789999
Q ss_pred HHHHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEE
Q 003316 307 KRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 386 (831)
Q Consensus 307 ~~i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV 386 (831)
++++++|+|++++|||+|++|+|||.+++.++...+|.|+.+++....++.||+++|++|+|||+..+++.|++++|+||
T Consensus 321 ~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV 400 (842)
T 1n0u_A 321 KVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRV 400 (842)
T ss_dssp HHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEE
T ss_pred HHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEE
Confidence 99999999999999999999999999998888877777654333334567799999999999999999999977999999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccceeeecCCCCCcccc
Q 003316 387 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPI 466 (831)
Q Consensus 387 ~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tgTl~~~~~~~~~~~ 466 (831)
|||+|++||.|++++++++++..+++..+||++|++++|++.++|++|.|||||+|.||+++.++|||||+... +.++
T Consensus 401 ~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~--~~~l 478 (842)
T 1n0u_A 401 FAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSET--AHNM 478 (842)
T ss_dssp EESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTT--CCCB
T ss_pred EeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCC--cccc
Confidence 99999999999999888776654444458999999999999999999999999999999998778889998776 7788
Q ss_pred ccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEc
Q 003316 467 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 546 (831)
Q Consensus 467 ~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~ 546 (831)
+++.++.+|+++++|||+++.|.+||.+||++|.+|||+|++..+||||++|+||||||||||++||+++| ++++++++
T Consensus 479 ~~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f-~~vev~~~ 557 (842)
T 1n0u_A 479 KVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDH-AGVPLKIS 557 (842)
T ss_dssp CCCCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTT-SCSCEEEE
T ss_pred ccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHh-cCCceEec
Confidence 99988757999999999999999999999999999999999999999999999999999999999999999 79999999
Q ss_pred CceEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEec
Q 003316 547 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFG 626 (831)
Q Consensus 547 ~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 626 (831)
+|+|+|||||.++++..++.+++++|+++++++|||+.++...++.|.+...++.+++...|..+|+||...++++|+||
T Consensus 558 ~P~V~yrETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~ 637 (842)
T 1n0u_A 558 PPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFG 637 (842)
T ss_dssp CCCCCCEEEESSCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEES
T ss_pred CcEEEEEEeeccccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeec
Confidence 99999999999998888888899999999999999999999999999888778888999999999999999999999999
Q ss_pred cCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHH
Q 003316 627 PETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 706 (831)
Q Consensus 627 p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al 706 (831)
|+..|+|+|+|.++|++++++++++|++||+||+++|||||+||+||+|+|+|+++|.|+++++++||++|+++||++|+
T Consensus 638 p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~ 717 (842)
T 1n0u_A 638 PDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGF 717 (842)
T ss_dssp STTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcEEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHH
Confidence 98778999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEE
Q 003316 707 LTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCV 786 (831)
Q Consensus 707 ~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 786 (831)
++|+|+||||||+|+|+||++++|+|++||++|||+|+++++.+|+++++|+|++|++|||||+++|||+|+|+|+|+|+
T Consensus 718 ~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~ 797 (842)
T 1n0u_A 718 LLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMV 797 (842)
T ss_dssp HHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEE
T ss_pred HhCCCeEEeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEE
Confidence 99999999999999999999999999999999999999999877777899999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCChhHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003316 787 FDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 831 (831)
Q Consensus 787 f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~~ 831 (831)
|+||++||+||++++|+|++||+++||||||++++|.+.+|+|+|
T Consensus 798 F~~y~~vp~~~~~~~~~a~~~~~~~R~rKGl~~~~p~~~~~~d~~ 842 (842)
T 1n0u_A 798 FDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842 (842)
T ss_dssp EEEEEECCSCTTCTTSHHHHHHHHHHHHTTCCSSCCCGGGGCCCC
T ss_pred eccceeCCCCccchhhHHHHHHHHHHHhCCCCCCCCCHHHhccCC
Confidence 999999999999999999999999999999999999999999997
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=5.5e-121 Score=1097.70 Aligned_cols=659 Identities=27% Similarity=0.387 Sum_probs=514.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc--cCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (831)
++||||||+||+|||||||+|+||+++|.+++. ..+..+++|++++||+|||||+++.+++.|... ..+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~---------~~~ 81 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGS---------RGQ 81 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCT---------TSC
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccC---------cCC
Confidence 689999999999999999999999999998762 112257999999999999999999999999631 123
Q ss_pred CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHH
Q 003316 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEA 162 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~ 162 (831)
+++++|||||||||+||..||.+|||++||||+||||++ +++++.|+++|||||||+ ++++.
T Consensus 82 ~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~----~a~~~-- 155 (709)
T 4fn5_A 82 YDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ----GANFL-- 155 (709)
T ss_dssp SCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST----TCCHH--
T ss_pred CCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc----CccHH--
Confidence 457999999999999999999999999999999999998 667789999999999999 88744
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccC--cceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCc
Q 003316 163 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 240 (831)
Q Consensus 163 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~ 240 (831)
..+++++..+.. .+...++|++++ ..|+ +|...+..++|++...
T Consensus 156 -----~~~~ei~~~l~~-----------~~~~~~~pi~~~~~~~g~----------------vd~~~~~~~~~~~~~~-- 201 (709)
T 4fn5_A 156 -----RVVEQIKKRLGH-----------TPVPVQLAIGAEENFVGQ----------------VDLIKMKAIYWNDDDK-- 201 (709)
T ss_dssp -----HHHHHHHHHHCS-----------CEEESEEEESSSTTCCEE----------------EETTTTEEEEEEC--C--
T ss_pred -----HHHHHhhhhccc-----------ceeeeecccCchhccceE----------------EEEeeeeEEEeecccC--
Confidence 444555444431 233346666654 3333 2333333455543211
Q ss_pred CCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc---
Q 003316 241 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA--- 316 (831)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~--- 316 (831)
...+...+ ....+.+.....+..+++.+++.|++++++|+++ .+++.+++. ..+.+... .+++|+
T Consensus 202 -g~~~~~~~-----~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~--~~~~~~~~~---~~l~~~~~~~~~~pv~~g 270 (709)
T 4fn5_A 202 -GMTYREEE-----IPAELKDLAEEWRSSMVEAAAEANEELMNKYLEE--GELSEAEIK---EGLRLRTLACEIVPAVCG 270 (709)
T ss_dssp -CCEEEECC-----CCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHH--SCCCHHHHH---HHHHHHHHTTSCEEEEEC
T ss_pred -Cceecccc-----ccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhc--CCccHHHHH---HHHHHhhhhceeeeeeee
Confidence 11222221 2334555555667788999999999999999998 678888776 44444443 577885
Q ss_pred -------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEee
Q 003316 317 -------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSG 389 (831)
Q Consensus 317 -------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sG 389 (831)
++.|||+|++++|+|.+++..+... .+++.....+.||+++|++++|||+.++++.|+ ++|+|||||
T Consensus 271 sa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~-----~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~-la~~RV~sG 344 (709)
T 4fn5_A 271 SSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVS-----PDDETVEDERHADDNEPFSSLAFKIATDPFVGT-LTFARVYSG 344 (709)
T ss_dssp BTTTTBTHHHHHHHHHHHSCCTTSSCCEECBC-----CC-CCSCCEECSCTTSCCEEEEEECCCBTTTBC-CCEEEEEES
T ss_pred ecccCCchHHHHHHHHhhCCCCcccccccccC-----CccccccccccCCccCcceEEEEEeecccCCCc-eEEEeccCC
Confidence 7899999999999999876554332 123334456789999999999999999999886 999999999
Q ss_pred EecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCcccccc
Q 003316 390 KVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRA 468 (831)
Q Consensus 390 tL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~ 468 (831)
+|++||.|+ |.+++++ +++++|+.++|++.++|++|+|||||+|.|++++ .+| ||++... +..+++
T Consensus 345 tl~~G~~v~----~~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~--~~gdTl~~~~~--~~~~~~ 411 (709)
T 4fn5_A 345 VLSSGDSVL----NSVKGKK-----ERVGRMVQMHANQREEIKEVRAGDIAALIGMKDV--TTGDTLCSIEK--PIILER 411 (709)
T ss_dssp CEETTCBCB----CTTTCCC-----CBCCCEECCCSSCCCEESEECTTCEEEECSCSSC--CTTCEEECSSS--CCBCC-
T ss_pred CCCCCCEEE----EecCCcE-----EeecceeEeecceeeEeeeecCCCeeeecCCCcC--ccCCEecCCCc--cccCCC
Confidence 999999999 4444544 7999999999999999999999999999999986 677 9999877 777888
Q ss_pred ccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEcC
Q 003316 469 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 547 (831)
Q Consensus 469 ~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~ 547 (831)
+.++ +|+++++|+|.+++|++||.+||++|.+|||+|+++.+ +|||++|+||||||||||++||+++| ++++++++
T Consensus 412 ~~~~-~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~--gvev~vs~ 488 (709)
T 4fn5_A 412 MDFP-EPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF--GVEANIGK 488 (709)
T ss_dssp ---C-CCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTT--CCCBCCBC
T ss_pred CCCC-CcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHh--CceEEEee
Confidence 8886 99999999999999999999999999999999999986 99999999999999999999999999 99999999
Q ss_pred ceEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcC--CchhccceEEEe
Q 003316 548 PVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFG--WDKDLAKKIWCF 625 (831)
Q Consensus 548 p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~--~~~~~~~~i~~~ 625 (831)
|+|+|||||++.+. +..++|++ ++|+. +||+ |.......+|.+
T Consensus 489 P~V~yrETi~~~~~-----~~~~~~~k----------------~~~~~--------------~~~~~~~~~~~~~~~~e~ 533 (709)
T 4fn5_A 489 PQVAYRETITKDNV-----EIEGKFVR----------------QSGGR--------------GQFGHCWIRFSAADVDEK 533 (709)
T ss_dssp CCCCCEEECCCCSE-----EEEEEEEE----------------EETTE--------------EEEEEEEEEEECCCBC-C
T ss_pred ceEEEEEEEecCCc-----eecceeee----------------ccCCc--------------CcceeEEEEEeecccccc
Confidence 99999999987542 11223332 22221 2222 222222233444
Q ss_pred ccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHH
Q 003316 626 GPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYAS 705 (831)
Q Consensus 626 ~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a 705 (831)
||.. ..+.|.+.+.|..+++++.++|++||+||+++||||||||+||+|+|.|+++|.+.++.. .|..|+++||++|
T Consensus 534 g~~~-~~~~f~~~~~~~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~--~f~~a~~~a~~~a 610 (709)
T 4fn5_A 534 GNIT-EGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEM--AFKIAASMATKQL 610 (709)
T ss_dssp CCBC-CEEEEEECC-CCSSCGGGHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHH--HHHHHHHHHHHTH
T ss_pred CCCc-CceEEecccccccCCHHHHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCChH--HHHHHHHHHHHHH
Confidence 4432 358899999999999999999999999999999999999999999999999997433332 3557999999999
Q ss_pred HHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEE
Q 003316 706 QLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 785 (831)
Q Consensus 706 l~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 785 (831)
+++|+|+||||||.|+|+||++++|+||++|++|||+|++++..+ +..+|+|++|++|||||+++|||+|+|+|+|+|
T Consensus 611 ~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i~~~~~~~--~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~ 688 (709)
T 4fn5_A 611 AQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTV--SGKVIRAEVPLGEMFGYATDVRSMSQGRASYSM 688 (709)
T ss_dssp HHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEEEEEEECS--SEEEEEEEEESGGGTTHHHHHHHHTTTCCEEEC
T ss_pred HHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCEEeceEecC--CCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEE
Confidence 999999999999999999999999999999999999999998876 467899999999999999999999999999999
Q ss_pred EecceeecCCCC
Q 003316 786 VFDHWDMMSSDP 797 (831)
Q Consensus 786 ~f~~y~~v~~d~ 797 (831)
+|+||++||+|+
T Consensus 689 ~F~~y~~vp~~~ 700 (709)
T 4fn5_A 689 EFSKYAEAPSNI 700 (709)
T ss_dssp CEEEEEECCHHH
T ss_pred EECCcccCCcCH
Confidence 999999999975
No 3
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=2.8e-112 Score=1017.36 Aligned_cols=660 Identities=27% Similarity=0.360 Sum_probs=546.2
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc---cCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccc
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 91 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~---~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (831)
.++++|||+|+||+|||||||+++|++.+|.+.+. ..| .+++|+.++|++||+|+.+...++.|...
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g-~~~~D~~~~E~~rgiTi~~~~~~~~~~~~--------- 75 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG-AATMDWMEQEQERGITITSAATTAFWSGM--------- 75 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCC-ceeecChhhHHhcCceeeeceEEEEECCc---------
Confidence 45789999999999999999999999999887652 123 47899999999999999999999988510
Q ss_pred ccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCH
Q 003316 92 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDG 159 (831)
Q Consensus 92 ~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~ 159 (831)
..++..+.+||||||||.||..++.++++.+|+||+|||+++ +...+.|+++|+||+|+. .+++
T Consensus 76 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~----~~~~ 151 (704)
T 2rdo_7 76 AKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM----GANF 151 (704)
T ss_pred cccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcc----cccH
Confidence 012345899999999999999999999999999999999986 223456677799999999 7775
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccC--cceeEEeehhHHHHhhhhcCCChHHHHHHhhcccc
Q 003316 160 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 237 (831)
Q Consensus 160 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~ 237 (831)
.++.+. ++..+.. .+...++|++.+ ..|+ +|+..+.+++|.+.
T Consensus 152 ~~~~~~-------l~~~l~~-----------~~~~~~~Pi~~~~~f~g~----------------~dl~~~~~~~~~~~- 196 (704)
T 2rdo_7 152 LKVVNQ-------IKTRLGA-----------NPVPLQLAIGAEEHFTGV----------------VDLVKMKAINWNDA- 196 (704)
T ss_pred HHHHHH-------HHHHhCC-----------CceeEEccccccccccce----------------eehhhhhhhcccCc-
Confidence 444444 4433321 011124455433 1221 66777777777421
Q ss_pred cCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc
Q 003316 238 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 316 (831)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 316 (831)
..+.++...+ ....+.+++.+++++|++.+++.|+++|++||++ ++++.+++. +++++.++ ++|+|+
T Consensus 197 --~~g~~~~~~~-----~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~--~~l~~~~l~---~~l~~~~~~~~~~Pv 264 (704)
T 2rdo_7 197 --DQGVTFEYED-----IPADMVELANEWHQNLIESAAEASEELMEKYLGG--EELTEAEIK---GALRQRVLNNEIILV 264 (704)
T ss_pred --cCCcceEEec-----CCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcC--CCCCHHHHH---HHHHHHHHhCCeeEE
Confidence 0022233322 1335778899999999999999999999999996 889999987 55666655 689997
Q ss_pred ----------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEE
Q 003316 317 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 386 (831)
Q Consensus 317 ----------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV 386 (831)
+++|||+|++++|+|.+++.++. +. +.++. ....+.||+++|++|+|||+.++++.|+ ++|+||
T Consensus 265 ~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~~-~~~~~-~~~~~~~~~~~p~~~~VfK~~~d~~~G~-~~~~RV 338 (704)
T 2rdo_7 265 TCGSAFKNKGVQAMLDAVIDYLPSPVDVPAING---IL-DDGKD-TPAERHASDDEPFSALAFKIATDPFVGN-LTFFRV 338 (704)
T ss_pred EEeecccCccHHHHHHHHHHHCCChhhcccccc---cC-Ccccc-cccccccCCCCceEEEEEEEEEcCCCce-EEEEEE
Confidence 69999999999999988765433 11 11111 1245678899999999999999999887 999999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccc
Q 003316 387 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHP 465 (831)
Q Consensus 387 ~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~ 465 (831)
|||+|++||.|++. +.+.+ ++|++|+.++|++.++|++|.|||||+|.|++++ ++| ||++... +.+
T Consensus 339 ~sG~l~~g~~v~~~----~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~--~~GdTl~~~~~--~~~ 405 (704)
T 2rdo_7 339 YSGVVNSGDTVLNS----VKAAR-----ERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDV--TTGDTLCDPDA--PII 405 (704)
T ss_pred EeeeecCCCEEEeC----CCCcE-----EEeceEEEEeCCCceEcceeCCCCEEEEeCcccC--ccCCEEeCCCc--ccc
Confidence 99999999999953 33433 7999999999999999999999999999999987 788 9998876 778
Q ss_pred cccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEE
Q 003316 466 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEII 544 (831)
Q Consensus 466 ~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~ 544 (831)
++++.++ .|+++++|+|.++.|.+||.+||++|.+|||+|++..+ +|||++|+|||||||||+++||+++| +++++
T Consensus 406 l~~~~~~-~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f--~v~v~ 482 (704)
T 2rdo_7 406 LERMEFP-EPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREF--NVEAN 482 (704)
T ss_pred cCCCCCC-CceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh--CceEE
Confidence 8899987 99999999999999999999999999999999999997 89999999999999999999999999 99999
Q ss_pred EcCceEeEEeeeeccc-ceeEeee----cCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhcc
Q 003316 545 KSDPVVSFRETVLEKS-CRTVMSK----SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLA 619 (831)
Q Consensus 545 ~~~p~V~yrETi~~~~-~~~~~~~----~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 619 (831)
+++|+|+|||||.+++ +.....+ ..+++++++++++|++. |
T Consensus 483 ~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~--------~-------------------------- 528 (704)
T 2rdo_7 483 VGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEP--------G-------------------------- 528 (704)
T ss_pred EeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCC--------C--------------------------
Confidence 9999999999998876 4433222 12334455555555531 0
Q ss_pred ceEEEeccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccc-cccccCCCchHHHH
Q 003316 620 KKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTA 698 (831)
Q Consensus 620 ~~i~~~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~ 698 (831)
+++.+|.|.|.+.|+.++++++++|++||+||+++||||||||+||+|+|.|+++|. ||++. +|+.|+
T Consensus 529 --------~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~---~f~~a~ 597 (704)
T 2rdo_7 529 --------SNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSEL---AFKLAA 597 (704)
T ss_pred --------CCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcHH---HHHHHH
Confidence 111258999999999999999999999999999999999999999999999999997 55543 588999
Q ss_pred HHHHHHHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCC
Q 003316 699 RRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATS 778 (831)
Q Consensus 699 ~~a~~~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~ 778 (831)
++||++|+++|+|+||||||+|+|+||++++|+||++|++|||+|++++..+ ++++|+|++|++|||||+++|||+|+
T Consensus 598 ~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~ 675 (704)
T 2rdo_7 598 SIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEV--TGVKIHAEVPLSEMFGYATQLRSLTK 675 (704)
T ss_pred HHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEeCceecC--CeEEEEEEecHHHHhhHHHHhHhhcC
Confidence 9999999999999999999999999999999999999999999999999876 47999999999999999999999999
Q ss_pred CCceeEEEecceeecCCCCCCCChhHHHHHHH
Q 003316 779 GQAFPQCVFDHWDMMSSDPLEPGSQASQLVLD 810 (831)
Q Consensus 779 G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~ 810 (831)
|+|+|+|+|+||+++|+++ +++++++
T Consensus 676 G~~~~~~~f~~y~~~~~~~------~~~i~~~ 701 (704)
T 2rdo_7 676 GRASYTMEFLKYDEAPSNV------AQAVIEA 701 (704)
T ss_pred CceEEEEEeCcceECCccH------HHHHHHH
Confidence 9999999999999999997 8888876
No 4
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.6e-110 Score=995.75 Aligned_cols=650 Identities=25% Similarity=0.379 Sum_probs=517.5
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc---cCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccc
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~---~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (831)
++++|||+|+||+|||||||+++|++.++.+.+. ..| .+++|+.+.|++||+|+.+...++.|.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~-~~~~D~~~~e~~~giTi~~~~~~~~~~------------ 73 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEG-ASQMDWMEQEQDRGITITSAATTAAWE------------ 73 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------CCSEEEEEET------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCC-ceecccchhhhhcCceEeeeeEEEEEC------------
Confidence 4679999999999999999999999998887542 112 468999999999999999999999885
Q ss_pred cCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHH
Q 003316 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGE 160 (831)
Q Consensus 93 ~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~ 160 (831)
++.++|||||||.+|..++.++++.+|++|+|+|+.+ +...+.|.++|+||+|+. +++..
T Consensus 74 ----~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~----~~~~~ 145 (693)
T 2xex_A 74 ----GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL----GANFE 145 (693)
T ss_dssp ----TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTST----TCCHH
T ss_pred ----CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcc----ccchH
Confidence 7899999999999999999999999999999999986 223356667799999999 77644
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeecc--CcceeEEeehhHHHHhhhhcCCChHHHHHHhhccccc
Q 003316 161 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSA--GLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 238 (831)
Q Consensus 161 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s--~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~ 238 (831)
++. ++++..+.. .+....+|++. +..|+.- ... +..| +|
T Consensus 146 ~~~-------~~l~~~l~~-----------~~~~~~ipisa~~~~~~l~d----------------~l~--~~~~---~~ 186 (693)
T 2xex_A 146 YSV-------STLHDRLQA-----------NAAPIQLPIGAEDEFEAIID----------------LVE--MKCF---KY 186 (693)
T ss_dssp HHH-------HHHHHHHCC-----------CEEESEEEECCGGGCCEEEE----------------TTT--TEEE---EC
T ss_pred HHH-------HHHHHHhCC-----------CceeEEeecccCCCcceeee----------------eec--ceeE---Ee
Confidence 443 333333321 11112344433 2333211 111 1112 33
Q ss_pred C-cCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc
Q 003316 239 D-PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 316 (831)
Q Consensus 239 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 316 (831)
+ ..+..+...+ ....|.+.....+.+|++.+++.|+++|++||++ .+++.+++. +++++.+. .+++|+
T Consensus 187 ~~~~~~~~~~~~-----~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~--~~~~~~~~~---~~l~~~~~~~~~~Pv 256 (693)
T 2xex_A 187 TNDLGTEIEEIE-----IPEDHLDRAEEARASLIEAVAETSDELMEKYLGD--EEISVSELK---EAIRQATTNVEFYPV 256 (693)
T ss_dssp CSSSSCSCEEEC-----CCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTT--CCCCHHHHH---HHHHHHHHTTSCEEE
T ss_pred ccCCCceeEEec-----CCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcC--CCCCHHHHH---HHHHHHHHhCCeeeE
Confidence 3 1111122222 1335777788889999999999999999999996 788988886 45555554 578896
Q ss_pred ----------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEE
Q 003316 317 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 386 (831)
Q Consensus 317 ----------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV 386 (831)
++.|||+|++++|+|.+++.++.. . +.++. ....+.||+++|++|+|||+.++++.|+ ++|+||
T Consensus 257 ~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~---~-~~~~~-~~~~~~~~~~~p~~a~VfK~~~d~~~g~-~~~~RV 330 (693)
T 2xex_A 257 LCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGH---R-ASNPE-EEVIAKADDSAEFAALAFKVMTDPYVGK-LTFFRV 330 (693)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEE---E-TTEEE-EEEEECSCTTSCCEEEEEEEEEETTTEE-EEEEEE
T ss_pred EEeecccCcCHHHHHHHHHHHCCCchhccccccc---C-CCccc-cceeecCCCCCceEEEEEEeeecCCCce-EEEEEE
Confidence 689999999999999886554321 1 11111 2346678999999999999999999887 999999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccc
Q 003316 387 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHP 465 (831)
Q Consensus 387 ~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~ 465 (831)
|||+|++||.|++. +.+.+ +||++|+.++|++.++|++|.|||||++.||+++ ++| ||++... +.+
T Consensus 331 ~sG~l~~g~~v~~~----~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~GdTl~~~~~--~~~ 397 (693)
T 2xex_A 331 YSGTMTSGSYVKNS----TKGKR-----ERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDT--GTGDTLCGEKN--DII 397 (693)
T ss_dssp EESEEETTEEEEET----TTTEE-----EEECCEEEECSSCEEECSEEETTCEEEEESCSSC--CTTCEEEETTC--CEE
T ss_pred EeeeEecCCEEEec----CCCce-----EEeceEEEEeCCCceEccccCcCCEEEEeCcccC--ccCCEEecCCC--ccc
Confidence 99999999999953 33433 7999999999999999999999999999999987 678 9999877 778
Q ss_pred cccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEE
Q 003316 466 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEII 544 (831)
Q Consensus 466 ~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~ 544 (831)
++++.++ .|+++++|+|.++.|.+||.+||++|.+|||+|++..+ +|||++|+|||||||||+++||+++| ++++.
T Consensus 398 ~~~~~~~-~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~--~v~v~ 474 (693)
T 2xex_A 398 LESMEFP-EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECN 474 (693)
T ss_dssp CCCCSSC-SCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHS--CCCEE
T ss_pred cCCcCCC-CceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh--CceEE
Confidence 8999987 89999999999999999999999999999999999997 89999999999999999999999999 99999
Q ss_pred EcCceEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEE
Q 003316 545 KSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC 624 (831)
Q Consensus 545 ~~~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 624 (831)
+++|+|+|||||.++++.. ++|++ |+|+. +||+ .+|.
T Consensus 475 ~~~p~V~yrEti~~~~~~~------~~~~k----------------q~gg~--------------~~~~-------~v~~ 511 (693)
T 2xex_A 475 VGAPMVSYRETFKSSAQVQ------GKFSR----------------QSGGR--------------GQYG-------DVHI 511 (693)
T ss_dssp ECCCEECCEEEESSCEEEE------EEEEE----------------CTTSS--------------CEEE-------EEEE
T ss_pred EeCCeEEEEEEecccccee------Eeecc----------------ccCCC--------------CceE-------EEEE
Confidence 9999999999999877543 33433 44432 3444 2443
Q ss_pred -eccCCCC-CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccc-cccccCCCchHHHHHHH
Q 003316 625 -FGPETIG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRV 701 (831)
Q Consensus 625 -~~p~~~g-~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a 701 (831)
++|...| +|.|.|.+.|+.++++++++|++||+||+++|||||+||+||+|+|.|+++|. ||++. +|+.|+++|
T Consensus 512 ~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~---~f~~a~~~a 588 (693)
T 2xex_A 512 EFTPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEM---AFKIAASLA 588 (693)
T ss_dssp EEEECCTTCCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCCBCSEEEEEEEEECCTTTCCHH---HHHHHHHHH
T ss_pred EEEECCCCCCCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeccccCCCCCHH---HHHHHHHHH
Confidence 4453222 58999999999999999999999999999999999999999999999999997 66654 478999999
Q ss_pred HHHHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCc
Q 003316 702 IYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQA 781 (831)
Q Consensus 702 ~~~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~ 781 (831)
|++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|++++..+ ++++|+|++|++|||||+++|||+|+|+|
T Consensus 589 ~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~ 666 (693)
T 2xex_A 589 LKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRG--NAQVVNAYVPLSEMFGYATSLRSNTQGRG 666 (693)
T ss_dssp HHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET--TEEEEEEEEEGGGCTTHHHHHHHHTTTCC
T ss_pred HHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccC--CeEEEEEEeCHHHHHhHHHHhHHhcCCce
Confidence 9999999999999999999999999999999999999999999999876 47999999999999999999999999999
Q ss_pred eeEEEecceeecCCCCCCCChhHHHHHHHH
Q 003316 782 FPQCVFDHWDMMSSDPLEPGSQASQLVLDI 811 (831)
Q Consensus 782 ~~~~~f~~y~~v~~d~~~~~~~~~~~~~~~ 811 (831)
+|+|+|+||+++|+++ +++++++.
T Consensus 667 ~~~~~f~~y~~~~~~~------~~~i~~~~ 690 (693)
T 2xex_A 667 TYTMYFDHYAEVPKSI------AEDIIKKN 690 (693)
T ss_dssp EEEEEEEEEEECCHHH------HHHHHHHH
T ss_pred EEEEEeCcceECChhH------HHHHHHHh
Confidence 9999999999999986 88988763
No 5
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=3.1e-110 Score=998.80 Aligned_cols=647 Identities=27% Similarity=0.404 Sum_probs=474.8
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc---cCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccc
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 91 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~---~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (831)
.++++|||+|+||+|||||||+++|++.+|.+.+. ..| .+++|+.+.|+++|+|+.+...++.|.
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~-~~~~d~~~~E~~~giTi~~~~~~~~~~----------- 75 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG-AATMDFMEQERERGITITAAVTTCFWK----------- 75 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEET-----------
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCC-ceeccCchhhhhcccccccceEEEEEC-----------
Confidence 44679999999999999999999999998887552 112 468999999999999999999999885
Q ss_pred ccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCH
Q 003316 92 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDG 159 (831)
Q Consensus 92 ~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~ 159 (831)
++.+||||||||.||..++.++++.+|++|+|||+.+ +...+.|.++|+||+|+. ++++
T Consensus 76 -----~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~----~~~~ 146 (691)
T 1dar_A 76 -----DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT----GADL 146 (691)
T ss_dssp -----TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTST----TCCH
T ss_pred -----CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcc----cCCH
Confidence 7899999999999999999999999999999999987 223456667799999999 7774
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeee--ccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccc
Q 003316 160 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAF--SAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 237 (831)
Q Consensus 160 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~--~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~ 237 (831)
.+ ++++++..+.. .+...++|+ +++..||...+.+.+ | +
T Consensus 147 ~~-------~~~~l~~~l~~-----------~~~~~~~Pi~~~~~~~g~~d~~~~~~------------------~---~ 187 (691)
T 1dar_A 147 WL-------VIRTMQERLGA-----------RPVVMQLPIGREDTFSGIIDVLRMKA------------------Y---T 187 (691)
T ss_dssp HH-------HHHHHHHTTCC-----------CEEECEEEESCGGGCCEEEETTTTEE------------------E---E
T ss_pred HH-------HHHHHHHHhCC-----------CccceeccccCCCcccchhhhhccee------------------e---E
Confidence 44 44444444321 111123344 455677755443222 1 2
Q ss_pred cC-cCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hcccc
Q 003316 238 FD-PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLP 315 (831)
Q Consensus 238 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P 315 (831)
|+ ..+..+...+ ....|.++..+++.+|++.+++.|+++|++||++ .+++.+++. +++++.+. ++++|
T Consensus 188 ~~~~~g~~~~~~~-----~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~--~~~~~~~~~---~~~~~~~~~~~~~P 257 (691)
T 1dar_A 188 YGNDLGTDIREIP-----IPEEYLDQAREYHEKLVEVAADFDENIMLKYLEG--EEPTEEELV---AAIRKGTIDLKITP 257 (691)
T ss_dssp ECSTTSCCEEEEC-----CCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHT--CCCCHHHHH---HHHHHHHHTTSCEE
T ss_pred eccCCCceeEEec-----CCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHhCcEeE
Confidence 22 1111122222 2345778888899999999999999999999996 789998886 44555554 57888
Q ss_pred c----------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEE
Q 003316 316 A----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGR 385 (831)
Q Consensus 316 ~----------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~R 385 (831)
+ ++.|||+|++++|+|.+++.++... + ++ ....+.||+++|++|+|||+..+++.|+ ++|+|
T Consensus 258 v~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~----~-~~--~~~~~~~~~~~p~~~~Vfk~~~d~~~G~-~~~~R 329 (691)
T 1dar_A 258 VFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTT----P-EG--EVVEIHPDPNGPLAALAFKIMADPYVGR-LTFIR 329 (691)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEEC----S-SS--CEEEECCCTTSCCEEEEEEEEEETTTEE-EEEEE
T ss_pred EEEeecccCcCHHHHHHHHHHhCCChhhcccccccC----C-Cc--cccccccCCCCCcEEEEEEEEEcCCCCc-EEEEE
Confidence 6 6999999999999998876544321 1 11 1245678999999999999999999887 99999
Q ss_pred EEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCc-
Q 003316 386 VFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDA- 463 (831)
Q Consensus 386 V~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~- 463 (831)
||||+|++||.|++. +++.+ ++|++|+.++|++.++|++|.|||||++.||+++ ++| ||++... +
T Consensus 330 V~sG~l~~g~~v~~~----~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~Gdtl~~~~~--~~ 396 (691)
T 1dar_A 330 VYSGTLTSGSYVYNT----TKGRK-----ERVARLLRMHANHREEVEELKAGDLGAVVGLKET--ITGDTLVGEDA--PR 396 (691)
T ss_dssp EEESEEESSCEEEET----TTTEE-----EECCEEEEECSSCEEEESEEETTCEEEEECCSSC--CTTCEEEETTC--CC
T ss_pred EeeeeEecCCEEEec----CCCcE-----EEEceEEEEeCCCceEcceecCCCEEEEeCcccC--ccCCEEecCCC--cc
Confidence 999999999999953 33333 7999999999999999999999999999999987 688 9998876 6
Q ss_pred cccccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCce
Q 003316 464 HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAE 542 (831)
Q Consensus 464 ~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~ 542 (831)
.+++++.++ .|+++++|+|.++.|.+||.+||++|.+|||+|+++.+ +|||++|+|||||||||+++||+++| +++
T Consensus 397 ~~l~~~~~~-~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~--~v~ 473 (691)
T 1dar_A 397 VILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF--KVD 473 (691)
T ss_dssp CBCC---------------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCE--EEB
T ss_pred cccCCCCCC-CceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhh--Cce
Confidence 788899987 89999999999999999999999999999999999997 89999999999999999999999999 999
Q ss_pred EEEcCceEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceE
Q 003316 543 IIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKI 622 (831)
Q Consensus 543 v~~~~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 622 (831)
+.+++|+|+|||||.++++.. ++|++ |+|+. +||+ .+
T Consensus 474 v~~~~p~V~yrEti~~~~~~~------~~~~k----------------q~gg~--------------~~~~-------~v 510 (691)
T 1dar_A 474 ANVGKPQVAYRETITKPVDVE------GKFIR----------------QTGGR--------------GQYG-------HV 510 (691)
T ss_dssp TTTBCCCBCCEEECSSCEEEE------EEEEE----------------CCSSS--------------CEEE-------EE
T ss_pred EEEeCCeEEEEEeeccceeee------eeecc----------------ccCCC--------------CceE-------EE
Confidence 999999999999999877543 33433 44432 3444 24
Q ss_pred EE-eccCCCC-CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccc-cccccCCCchHHHHH
Q 003316 623 WC-FGPETIG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTAR 699 (831)
Q Consensus 623 ~~-~~p~~~g-~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~ 699 (831)
|. ++|...| +|.|.|.+.|+.++++++++|++||+||+++|||||+||+||+|+|.|+++|. ||++. +|+.|++
T Consensus 511 ~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~---~f~~a~~ 587 (691)
T 1dar_A 511 KIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEM---AFKIAGS 587 (691)
T ss_dssp EEEEEECCTTCCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTSCCBCSEEEEEEEECCCTTTBCHH---HHHHHHH
T ss_pred EEEEEECCCCCCCEEeecccCCcCcHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccccCcchH---HHHHHHH
Confidence 43 4443222 48899999999999999999999999999999999999999999999999997 66654 4789999
Q ss_pred HHHHHHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCC
Q 003316 700 RVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSG 779 (831)
Q Consensus 700 ~a~~~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G 779 (831)
+||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|++++..+ ++++|+|++|++|||||+++|||+|+|
T Consensus 588 ~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G 665 (691)
T 1dar_A 588 MAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRG--NAQVIRAFVPLAEMFGYATDLRSKTQG 665 (691)
T ss_dssp HHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEET--TEEEEEEEEETTTSSSHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecC--CeEEEEEEecHHHHhhHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999876 479999999999999999999999999
Q ss_pred CceeEEEecceeecCCCCCCCChhHHHHHH
Q 003316 780 QAFPQCVFDHWDMMSSDPLEPGSQASQLVL 809 (831)
Q Consensus 780 ~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~ 809 (831)
+|+|+|+|+||+++|+++ ++++++
T Consensus 666 ~~~~~~~f~~y~~~~~~~------~~~i~~ 689 (691)
T 1dar_A 666 RGSFVMFFDHYQEVPKQV------QEKLIK 689 (691)
T ss_dssp CCEEEEEEEEEEECCHHH------HHHHHC
T ss_pred ceEEEEEeCcceECChhH------HHHHHh
Confidence 999999999999999986 777764
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=6.3e-113 Score=1014.49 Aligned_cols=589 Identities=21% Similarity=0.271 Sum_probs=490.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc---cCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~---~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (831)
+||||||+||+|||||||+|+||+++|.+++. +.| .+++|++++||+|||||+++.++|.|.
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g-~~~~D~~~~EreRGITI~s~~~~~~~~-------------- 65 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKG-TTRTDNTLLERQRGITIQTGITSFQWE-------------- 65 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCS-CCSTTCSTTHHHHSSCSSCCCCCCBCS--------------
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccC-CcccCCcHHHHhCCCcEEeeeEEEEEC--------------
Confidence 58999999999999999999999999999873 122 468999999999999999999999996
Q ss_pred CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHH
Q 003316 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEA 162 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~ 162 (831)
+++|||||||||+||..||.+||+++|+||+||||++ +...+.|+++|||||||+ ++++..+
T Consensus 66 --~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~----~a~~~~~ 139 (638)
T 3j25_A 66 --NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN----GIDLSTV 139 (638)
T ss_dssp --SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS----SCCSHHH
T ss_pred --CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc----cCCHHHH
Confidence 8999999999999999999999999999999999998 556788999999999999 8885555
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCC
Q 003316 163 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 242 (831)
Q Consensus 163 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~ 242 (831)
.+.+++ .+.. ++.+... ++ +|.+.. .
T Consensus 140 ~~~i~~-------~l~~----------------~~~~~~~--------------------~~-------~~~~~~----~ 165 (638)
T 3j25_A 140 YQDIKE-------KLSA----------------EIVIKQK--------------------VE-------LYPNVC----V 165 (638)
T ss_dssp HHHHHH-------TTCC----------------CCCCCCC--------------------CC-------SCGGGC----C
T ss_pred HHHHHH-------HhCC----------------Cccccce--------------------eE-------eecccc----c
Confidence 444333 2211 0111000 00 011000 0
Q ss_pred CceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc-----
Q 003316 243 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA----- 316 (831)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~----- 316 (831)
..+ . ..+..+.+++.|++++++|+++ ..++..++.. .+.+.+. ..++|+
T Consensus 166 ~~~--------------~------~~~~~e~~~e~~d~l~e~~~~~--~~~~~~~~~~---~~~~~~~~~~~~Pv~~gSa 220 (638)
T 3j25_A 166 TNF--------------T------ESEQWDTVIEGNDDLLEKYMSG--KSLEALELEQ---EESIRFQNCSLFPLYHGSA 220 (638)
T ss_dssp CCC--------------C------CHHHHHHHHHHHCHHHHHHHHH--CCCCSHHHHH---HHHHHHHHTSCCCCCCCCS
T ss_pred ccc--------------c------hhhhhhhhhcccHHHHhhhccC--CccchHHHHH---HHhhhhccccccccccccc
Confidence 000 0 0134567777888999999998 6777777652 2333322 577886
Q ss_pred -----HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEe
Q 003316 317 -----SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKV 391 (831)
Q Consensus 317 -----~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL 391 (831)
+++|||+|++++|+|.+ ++++|++++|||+.++++.|+ ++|+|||||+|
T Consensus 221 ~~~~Gv~~LLd~i~~~~p~p~~-------------------------~~~~~~~~~Vfk~~~d~~~G~-la~~RV~sG~l 274 (638)
T 3j25_A 221 KSNIGIDNLIEVITNKFYSSTH-------------------------RGPSELCGNVFKIEYTKKRQR-LAYIRLYSGVL 274 (638)
T ss_dssp TTCCSHHHHHHHHHHSCCCSGG-------------------------GSCCCCCBEEBCCCCCSTTCC-CCBCCBSSBCC
T ss_pred ccCCCchhHhhhhhccccCccc-------------------------chhhhhcceeeeeeeeccCce-EEEEEEEcCcc
Confidence 79999999999999953 235789999999999999887 99999999999
Q ss_pred cCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCcccccccc
Q 003316 392 ATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMK 470 (831)
Q Consensus 392 ~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~ 470 (831)
++||.|++.+ . ++ +++.+++.++|.+.+++++|.|||||++.|. .. ++| |+++... .+.+..+.
T Consensus 275 ~~g~~v~~~~----~-~~-----~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~-~~--~~~~tl~d~~~--~~~~~~i~ 339 (638)
T 3j25_A 275 HLRDSVRVSE----K-EK-----IKVTEMYTSINGELCKIDRAYSGEIVILQNE-FL--KLNSVLGDTKL--LPQRKKIE 339 (638)
T ss_dssp CSCCCSSSCC----C-CC-----SSBCCCCSSCCCCBSCCCTTBCCCCSCCCSS-SC--SSEECSSSSSS--GGGCSCCC
T ss_pred cCCCcccccc----C-cc-----eeEEeeecccccccccccccccceEEEEecc-cc--ccCceecCCCC--cccccCcc
Confidence 9999998532 1 22 6999999999999999999999999999883 32 567 7877665 56667777
Q ss_pred ccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEcCce
Q 003316 471 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPV 549 (831)
Q Consensus 471 ~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~ 549 (831)
+| .|+++++|+|.++.|.+||.+||++|.+|||+++++.+ +|||++|+|||||||||+++||+++| ++++++++|+
T Consensus 340 ~p-~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~ef--gvev~~~~P~ 416 (638)
T 3j25_A 340 NP-HPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKY--HVEIELKEPT 416 (638)
T ss_dssp CC-CCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTT--CCCCEEECCC
T ss_pred CC-CccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHh--CCcEEEeCCc
Confidence 75 99999999999999999999999999999999999987 89999999999999999999999999 9999999999
Q ss_pred EeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEE-eccC
Q 003316 550 VSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC-FGPE 628 (831)
Q Consensus 550 V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~p~ 628 (831)
|+|||||.++++.... + ++|+. ++|+ .|+. ++|.
T Consensus 417 V~yrEti~~~~~~~~~--------~----------------~~~~~--------------~~~~-------~v~~~~eP~ 451 (638)
T 3j25_A 417 VIYMERPLKNAEYTIH--------I----------------EVPPN--------------PFWA-------SIGLSVSPL 451 (638)
T ss_dssp CCCCBCCCSCCEECCC--------C----------------CSSSC--------------CCCC-------CCCEECCCC
T ss_pred eeEEEEecccceEEEE--------E----------------ecCCC--------------CceE-------EEEEEEecc
Confidence 9999999987643221 1 22221 2333 2333 6664
Q ss_pred CCC-CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccc-cccccCCCchHHHHHHHHHHHH
Q 003316 629 TIG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQ 706 (831)
Q Consensus 629 ~~g-~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al 706 (831)
..| ++.|.+.+.|+.++++++++|++||++|+++| |||+||+|++|+|.|+++|. ||+ ..+|+.|+++||++|+
T Consensus 452 ~~~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~dg~~h~~~s~---~~~f~~a~~~a~~~a~ 527 (638)
T 3j25_A 452 PLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVST---PADFRMLAPIVLEQVL 527 (638)
T ss_dssp CSSCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCCCCCCSSCSCC---SHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEeeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccceEEEEEECcccCCCCC---HHHHHHHHHHHHHHHH
Confidence 433 47788888899999999999999999999999 99999999999999999996 443 4568899999999999
Q ss_pred HhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEE
Q 003316 707 LTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCV 786 (831)
Q Consensus 707 ~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 786 (831)
++|+|+||||||+|+|+||++++|+|++||++|||+|++++..+ +.++|+|++|++|||||+++|||+|+|+|+|+|+
T Consensus 528 ~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~~~ 605 (638)
T 3j25_A 528 KKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKN--NEVILSGEIPARCIQEYRSDLTFFTNGRSVCLTE 605 (638)
T ss_dssp HHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCT--TEEEEECCCSSCCHHHHHHHHHHTTTTCCEEECC
T ss_pred HHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecC--CeEEEEEEECHHHhhCHHHHHHhhCCCcEEEEEE
Confidence 99999999999999999999999999999999999999998865 5789999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCC
Q 003316 787 FDHWDMMSSDPLEPG 801 (831)
Q Consensus 787 f~~y~~v~~d~~~~~ 801 (831)
|+||++||+||++.+
T Consensus 606 f~~y~~vpgdp~~~~ 620 (638)
T 3j25_A 606 LKGYHVTTGEPVCQP 620 (638)
T ss_dssp CCCCCCCCSCCSCCC
T ss_pred ECceEECCCCccccc
Confidence 999999999999854
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=1e-101 Score=922.56 Aligned_cols=622 Identities=23% Similarity=0.332 Sum_probs=522.8
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCc----eEEecCchhhheeceeeeeceeEEEEeechhhhhcccc
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 91 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (831)
..+.+||+|+||+|||||||+++|++..+.+.. .|+ .+.+|+.+.|++||+|+.+....+.|.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~--~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~----------- 72 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKER--RGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR----------- 72 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSS--CCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET-----------
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCc--cceecCCcccccCCHHHHhcCCeEEecceEEeeC-----------
Confidence 367899999999999999999999988876544 232 367899999999999999998888875
Q ss_pred ccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCH
Q 003316 92 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDG 159 (831)
Q Consensus 92 ~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~ 159 (831)
++.+||+|||||.+|..++.++++.+|++++|+|+.+ +...+.|.++|+||+|+. ...
T Consensus 73 -----~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-----~~~ 142 (665)
T 2dy1_A 73 -----GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-----GDY 142 (665)
T ss_dssp -----TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-----CCH
T ss_pred -----CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-----hhH
Confidence 7899999999999999999999999999999999876 223456667799999986 233
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeecc--CcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccc
Q 003316 160 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSA--GLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 237 (831)
Q Consensus 160 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s--~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~ 237 (831)
.++.+.++ ..+.. ..| ..+|++. +..||. |... .+.| |
T Consensus 143 ~~~~~~l~-------~~l~~----------~~~--~~~Pi~~~~~~~g~~----------------d~~~--~~~~---~ 182 (665)
T 2dy1_A 143 YALLEDLR-------STLGP----------ILP--IDLPLYEGGKWVGLI----------------DVFH--GKAY---R 182 (665)
T ss_dssp HHHHHHHH-------HHHCS----------EEE--CEEEEEETTEEEEEE----------------ETTT--TEEE---E
T ss_pred HHHHHHHH-------HHhCC----------cce--EEeeecCCCcccchh----------------hhhh--hhee---e
Confidence 33333333 22210 011 1344433 233332 1211 2333 3
Q ss_pred cCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccccc
Q 003316 238 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 316 (831)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 316 (831)
|++. .+...+ ....|.++...++++|++.+++.|++++++||++ .+++.+++. .++++.++ ++|+|+
T Consensus 183 ~~~g--~~~~~~-----~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~--~~l~~~~~~---~~~~~~~~~~~~~pv 250 (665)
T 2dy1_A 183 YENG--EEREAE-----VPPEERERVQRFRQEVLEAIVETDEGLLEKYLEG--EEVTGEALE---KAFHEAVRRGLLYPV 250 (665)
T ss_dssp EETT--EEEEEC-----CCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHT--CCCCHHHHH---HHHHHHHHTTSCEEE
T ss_pred cCCC--ceeEec-----CCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHhCCeeEE
Confidence 3332 243332 2346788889999999999999999999999996 889999987 45666655 578885
Q ss_pred ----------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEE
Q 003316 317 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 386 (831)
Q Consensus 317 ----------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV 386 (831)
++.|||+|++++|+|.+. ++++|++++|||+..+++.|+ ++|+||
T Consensus 251 ~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~------------------------~~~~p~~~~V~k~~~d~~~G~-~~~~rV 305 (665)
T 2dy1_A 251 ALASGEREIGVLPLLELILEALPSPTER------------------------FGDGPPLAKVFKVQVDPFMGQ-VAYLRL 305 (665)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCCHHHH------------------------HCSCSCEEEEEEEEEETTTEE-EEEEEE
T ss_pred EEeecccCcCHHHHHHHHHHhCCCcccc------------------------CCCCCeEEEEEEEEEcCCCCe-EEEEEE
Confidence 689999999999999642 135899999999999999887 999999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCc--
Q 003316 387 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDA-- 463 (831)
Q Consensus 387 ~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~-- 463 (831)
|||+|++||.|++.+ . .++|++|+.++|.+.+++++|.|||||++.|++++ ++| ||++... +
T Consensus 306 ~sG~l~~g~~v~~~~------~-----~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~--~~Gdtl~~~~~--~~~ 370 (665)
T 2dy1_A 306 YRGRLKPGDSLQSEA------G-----QVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGL--HRGMVLWQGEK--PES 370 (665)
T ss_dssp EESEECTTEEEBCTT------S-----CEEESSEEEEETTEEEEESCEETTCEEEESSCTTC--CTTCEEESSSC--CCG
T ss_pred cccEEecCCEEEcCC------C-----eEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccC--ccCCEEecCCC--ccc
Confidence 999999999999531 2 27999999999999999999999999999999987 688 9998776 5
Q ss_pred cccccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcCCCce
Q 003316 464 HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAE 542 (831)
Q Consensus 464 ~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~ 542 (831)
.+++++.++ .|+++++|+|.++.|.+||.+||++|.+|||+|++..+ +|||++|+|||||||||+++||+ +| +++
T Consensus 371 ~~l~~~~~~-~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~--~v~ 446 (665)
T 2dy1_A 371 EEVPFARLP-DPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DY--GVE 446 (665)
T ss_dssp GGSCCCCCC-CCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HT--TCC
T ss_pred cccCCCCCC-CceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HC--Cce
Confidence 678889887 89999999999999999999999999999999999997 89999999999999999999999 99 999
Q ss_pred EEEcCceEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceE
Q 003316 543 IIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKI 622 (831)
Q Consensus 543 v~~~~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 622 (831)
+.+++|+|+|||||.++++. .++|++ |+|+. +||+ .+
T Consensus 447 v~~~~p~V~yrEti~~~~~~------~~~~~k----------------~~gg~--------------g~~~-------~v 483 (665)
T 2dy1_A 447 VEFSVPKVPYRETIKKVAEG------QGKYKK----------------QTGGH--------------GQYG-------DV 483 (665)
T ss_dssp EEEECCCCCCEEEESSCEEE------EEEEEE----------------EETTE--------------EEEE-------EE
T ss_pred EEEeCCEEEEEEeeccceee------eeeccc----------------ccCCC--------------cceE-------EE
Confidence 99999999999999987643 345555 55553 5665 35
Q ss_pred EE-eccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccc-cccccCCCchHHHHHH
Q 003316 623 WC-FGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARR 700 (831)
Q Consensus 623 ~~-~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~ 700 (831)
|. ++|.. +|.|.+.+.|+.++++++++|++||+||+++|||||+||+||+|+|.|+++|. ||++. +|+.|+++
T Consensus 484 ~~~~eP~~--g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~---~f~~a~~~ 558 (665)
T 2dy1_A 484 WLRLEPAS--EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDL---AFQIAASL 558 (665)
T ss_dssp EEEEEECS--SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEEEEECCTTTBCHH---HHHHHHHH
T ss_pred EEEEEECC--CCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccCCCCCHH---HHHHHHHH
Confidence 65 66654 48899999999999999999999999999999999999999999999999997 77655 47799999
Q ss_pred HHHHHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCC
Q 003316 701 VIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 780 (831)
Q Consensus 701 a~~~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~ 780 (831)
||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|++++..+ ++++|+|++|++|||||+++|||+|+|+
T Consensus 559 a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~--~~~~i~a~~P~~e~~~~~~~Lrs~T~G~ 636 (665)
T 2dy1_A 559 AFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG--ALSVVHAEVPLAEVLEYYKALPGLTGGA 636 (665)
T ss_dssp HHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET--TEEEEEEEEEGGGCTTHHHHHHHHHTTC
T ss_pred HHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecC--CeEEEEEEECHHHHhhHHHHhHhhcCCc
Confidence 99999999999999999999999999999999999999999999999875 5899999999999999999999999999
Q ss_pred ceeEEEecceeecCCCCCCCChhHHHHHHHHH
Q 003316 781 AFPQCVFDHWDMMSSDPLEPGSQASQLVLDIR 812 (831)
Q Consensus 781 ~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~~r 812 (831)
|+|+|+|+||+++|+++ +++++++.+
T Consensus 637 ~~~~~~f~~y~~~~~~~------~~~~~~~~~ 662 (665)
T 2dy1_A 637 GAYTLEFSHYAEVPPHL------AQRIVQERA 662 (665)
T ss_dssp CEEEEEEEEEEECCHHH------HHHHHHHHH
T ss_pred EEEEEEeCceeECCccH------HHHHHHHHh
Confidence 99999999999999986 899998854
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=1.5e-76 Score=689.02 Aligned_cols=440 Identities=21% Similarity=0.295 Sum_probs=308.7
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc------cCCceEEecCchhhheeceeeeeceeEEEEeechhh
Q 003316 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE------VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAA 85 (831)
Q Consensus 12 ~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~------~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~ 85 (831)
+.....++|||||+||+|||||||+|+||+++|.|.+. ..+..+++|++++||+|||||+++.+++.|.
T Consensus 24 ~~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~----- 98 (548)
T 3vqt_A 24 LEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR----- 98 (548)
T ss_dssp HHHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET-----
T ss_pred hhhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC-----
Confidence 44456789999999999999999999999999999762 1122478999999999999999999999996
Q ss_pred hhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhh
Q 003316 86 LKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFL 153 (831)
Q Consensus 86 ~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~ 153 (831)
+++|||||||||+||..||.++|+++|+||+||||++ +.+.+.|+++|||||||+
T Consensus 99 -----------~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~-- 165 (548)
T 3vqt_A 99 -----------DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE-- 165 (548)
T ss_dssp -----------TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC--
T ss_pred -----------CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch--
Confidence 8999999999999999999999999999999999998 445677878899999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeecc--CcceeEEeehhHHHHhhhhcCCChHHHHHH
Q 003316 154 ELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSA--GLHGWAFTLTNFAKMYASKFGVDESKMMER 231 (831)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s--~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~ 231 (831)
++++.++.+.+++.+.. ...| .++|++. ...|+...+.+.+..|....+
T Consensus 166 --~ad~~~~~~~i~~~l~~----------------~~~p--~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~--------- 216 (548)
T 3vqt_A 166 --ALHPLDVMADIEQHLQI----------------ECAP--MTWPIGMGSSFKGTYDLLHKQLHLFSATHG--------- 216 (548)
T ss_dssp --CCCHHHHHHHHHHHHTS----------------EEEE--SEEEESCGGGCCEEEETTTTEEEECC-------------
T ss_pred --hcchhHhhhhhhhhcCC----------------ceEe--EEeeeecCCcccceEeeeeeeeeecccccC---------
Confidence 99976666555544321 1223 3555554 455655544433322211110
Q ss_pred hhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHh
Q 003316 232 LWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ 311 (831)
Q Consensus 232 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~ 311 (831)
.... ...... . ...+.+.+. .+...+...+.++.+ ...+.....+ +. +.+
T Consensus 217 ---~~~~-----~~~~~~--~-~~~~~~~~~--------~~~~~~~~~~~~~l~-~~~~~~~~~e-------~~---~~g 266 (548)
T 3vqt_A 217 ---GRIQ-----SGIVIH--G-ADDPQLDEY--------LGDQAEQLRMDLALL-EEAGTPFDEE-------RY---LKG 266 (548)
T ss_dssp ------C-----CCEECC--S-TTCTHHHHH--------HGGGHHHHHHHHHHH-HHHCCCCCHH-------HH---HTT
T ss_pred ---Cccc-----cccccc--c-cchHHHHHH--------HHHHHHHhhhHHHHH-hhccCchhHH-------HH---HhC
Confidence 0000 000000 0 000111110 110000001111111 1111222221 11 125
Q ss_pred ccccc----------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecC---CCCC
Q 003316 312 TWLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPA---SDKG 378 (831)
Q Consensus 312 ~~~P~----------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~---~~~g 378 (831)
+++|+ +++|||+|++|+|||.+..... . ...+.++|++|+|||+..+ ++.|
T Consensus 267 ~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~---------------~-~~~~~~~p~~a~vfKi~~~~~~~~~G 330 (548)
T 3vqt_A 267 ELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAAT---------------R-VVEPGEEAFTGVVFKIQANMDKAHRD 330 (548)
T ss_dssp SEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSS---------------S-EECTTCSSCEEEEEEEECC-------
T ss_pred CcceeeecccccCcCHHHHHHHHHHhCCCCCCccccc---------------c-ccCCCCcCceEEEEEEEccCCcCCCC
Confidence 67786 7999999999999997543110 0 0123467999999999876 6777
Q ss_pred ceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeec
Q 003316 379 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTN 457 (831)
Q Consensus 379 ~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~ 457 (831)
+ ++|+|||||+|++|+.|++. +++++ +|+++++.++|.++++|++|.|||||+|.|++++ ++| |||+
T Consensus 331 r-la~~RV~sG~l~~g~~v~~~----~~~~~-----~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GDTl~~ 398 (548)
T 3vqt_A 331 R-MAFLRICSGTFTRGMRLKHH----RTGKD-----VTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTI--KIGDTFTE 398 (548)
T ss_dssp C-EEEEEEEESCEETTCEEEET----TTTEE-----EECTTCEECCCSSCCSSCEECTTCEEEEECSSCC--CTTCEEES
T ss_pred e-EEEEEEecceecCCCEEEee----ccccc-----cccchhhhhccccccccCEEecCCEEEecCCccC--ccCCEecC
Confidence 6 99999999999999999954 33433 7999999999999999999999999999999997 788 9999
Q ss_pred CCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCCcEEEEecchHHHHHHHHHHHhhc
Q 003316 458 EKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDF 537 (831)
Q Consensus 458 ~~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f 537 (831)
... +.+++++.++ .|+++++|+|+++.|.++|.++|++|.+|||+..++.++|||++|+|||||||||+++||+++|
T Consensus 399 ~~~--~~~~~~i~~~-~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey 475 (548)
T 3vqt_A 399 SKE--VLKFVGIPNF-APEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEY 475 (548)
T ss_dssp SSS--CCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSSEEEEESSSCCCEEEESSTHHHHHHHHHHHHHH
T ss_pred CCC--ccccCCCCCC-CCcceeeeeeCCchhHHHHHHHHHHhhhcCceeEEEECCCCcEEEEEECHHHHHHHHHHHHHHh
Confidence 877 7788888886 9999999999999999999999999999999665544599999999999999999999999999
Q ss_pred CCCceEE-----EcCceEeEEeeeecccc
Q 003316 538 MGGAEII-----KSDPVVSFRETVLEKSC 561 (831)
Q Consensus 538 ~~~v~v~-----~~~p~V~yrETi~~~~~ 561 (831)
||++. ++.|+|+|||||...++
T Consensus 476 --~vev~~e~v~~~~P~V~YrEti~~~~~ 502 (548)
T 3vqt_A 476 --GVDAVYEGVSTHTARWVYCEDKKIFAD 502 (548)
T ss_dssp --CCCEEEEECSCCEEEEEECSCHHHHHH
T ss_pred --CCCEEEeeccccCceEEecCCccchhh
Confidence 99976 57899999999988763
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=2e-72 Score=655.54 Aligned_cols=476 Identities=26% Similarity=0.433 Sum_probs=362.6
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
.+++|||+|+||+|||||||+++|++.+|.+.....+ .+++|+.+.|++||+|+.+..+++.|.. .++
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGITI~~~~~~~~~~~-----------~dg 70 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKR-EQLLDTLDVERERGITVKMQAVRMFYKA-----------KDG 70 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEEC-----------TTS
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccccc-ccccccchhhhcccceeeeeEEEEEEEc-----------CCC
Confidence 3679999999999999999999999999988765343 4789999999999999999999999862 123
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHH
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAY 163 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~ 163 (831)
..+.+||||||||.||..++.++++.+|+||+|||+++ +...+.|.++|+||+|+. +++++++.
T Consensus 71 ~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~----~a~~~~v~ 146 (600)
T 2ywe_A 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLP----SADVDRVK 146 (600)
T ss_dssp CEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTST----TCCHHHHH
T ss_pred CeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcc----ccCHHHHH
Confidence 46899999999999999999999999999999999987 233456667799999999 77754433
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCC
Q 003316 164 QTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 243 (831)
Q Consensus 164 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~ 243 (831)
+.+.+ .+. +.+ ..+.+.|+..
T Consensus 147 ~el~~-------~lg-----------~~~--~~vi~vSAkt--------------------------------------- 167 (600)
T 2ywe_A 147 KQIEE-------VLG-----------LDP--EEAILASAKE--------------------------------------- 167 (600)
T ss_dssp HHHHH-------TSC-----------CCG--GGCEECBTTT---------------------------------------
T ss_pred HHHHH-------hhC-----------CCc--ccEEEEEeec---------------------------------------
Confidence 22221 110 000 0111112100
Q ss_pred ceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHHHH
Q 003316 244 KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEM 323 (831)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~ 323 (831)
+ . .++.||++
T Consensus 168 --------g--------------------------------------~------------------------GI~~Lle~ 177 (600)
T 2ywe_A 168 --------G--------------------------------------I------------------------GIEEILEA 177 (600)
T ss_dssp --------T--------------------------------------B------------------------SHHHHHHH
T ss_pred --------C--------------------------------------C------------------------CchHHHHH
Confidence 0 0 12467889
Q ss_pred HHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCC
Q 003316 324 MIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPN 403 (831)
Q Consensus 324 I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n 403 (831)
+++++|+|. .++++|+.++|||+..+++.|. ++++||++|+|++||.|+++..
T Consensus 178 I~~~lp~p~-------------------------~~~~~pl~~lV~~~~~d~~~G~-v~~~rV~sG~l~~Gd~I~~~~~- 230 (600)
T 2ywe_A 178 IVNRIPPPK-------------------------GDPQKPLKALIFDSYYDPYRGA-VAFVRIFDGEVKPGDKIMLMST- 230 (600)
T ss_dssp HHHHSCCCC-------------------------CCTTSCCEEEEEEEEEETTTEE-EEEEEEEESEECTTCEEEETTT-
T ss_pred HHHhccccc-------------------------ccccCCcceeEEEEeecccceE-EEEEEEEeCEEecCCEEEeccc-
Confidence 999999983 1356899999999999998886 9999999999999999997642
Q ss_pred CCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe-c---cccccccce-eeecCCCCCc--cccccccccCCce
Q 003316 404 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-G---LDQYITKNA-TLTNEKEVDA--HPIRAMKFSVSPV 476 (831)
Q Consensus 404 ~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~~~tg-Tl~~~~~~~~--~~~~~~~~~~~Pv 476 (831)
+. .++|++++.+++ +..+++++.||||+++. | ++++ ++| ||++... + .+++++.++ +|+
T Consensus 231 ---~~-----~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~--~~GDtl~~~~~--~~~~~l~~~~~~-~P~ 296 (600)
T 2ywe_A 231 ---GK-----EYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDI--RIGDTITHAKN--PTKEPVPGFQPA-KPM 296 (600)
T ss_dssp ---TE-----EEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSS--CTTCEEEESSS--CCSSCCSCCCCC-CCC
T ss_pred ---cc-----eEeeecccccCC-CceECCEEecCceeeeeccccchhhc--cCCCEEEeCCC--ccccccCCCCCC-CcE
Confidence 22 279999999887 58899999999999885 5 4455 778 9998766 4 467888876 999
Q ss_pred EEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCCcEEEEe-----cchHHHHHHHHHHHhhcCCCceEEEcCceEe
Q 003316 477 VRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVS 551 (831)
Q Consensus 477 ~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g-----~GElHLei~~~rL~~~f~~~v~v~~~~p~V~ 551 (831)
++++|+|.+..|.++|.+||++|.+|||+|+++ .+|+|.++.| ||||||||+++||+++| ++++.+++|+|+
T Consensus 297 v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~g~~~~~~G~lHlei~~erl~re~--~~~v~~~~P~V~ 373 (600)
T 2ywe_A 297 VYAGIYPAEDTTYEELRDALEKYAINDAAIVYE-PESSPALGMGFRVGFLGLLHMEIVQERLEREY--GVKIITTAPNVI 373 (600)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS--CCCEEECCCEEC
T ss_pred EEEEeeccccccHHHHHHHHHHHhhhCCEEEEE-ECCccccccceEEEeccHHHHHHHHHHHHhhc--CceEEEEeeeEE
Confidence 999999999999999999999999999999997 4677766666 99999999999999999 999999999999
Q ss_pred EEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCC
Q 003316 552 FRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIG 631 (831)
Q Consensus 552 yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g 631 (831)
|||||.+.. +. +.+ .
T Consensus 374 yreti~~~g----------~~----~~~----------------------------------------------~----- 388 (600)
T 2ywe_A 374 YRVKKKFTD----------EV----IEV----------------------------------------------R----- 388 (600)
T ss_dssp EEEEETTCS----------SC----EEE----------------------------------------------S-----
T ss_pred EEEEecCCC----------cE----EEE----------------------------------------------e-----
Confidence 999987411 00 000 0
Q ss_pred CceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCC
Q 003316 632 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKP 711 (831)
Q Consensus 632 ~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p 711 (831)
| | +++|+.+ + .. +
T Consensus 389 -~------------------------------p-~~~p~~~----------~----~~---------------------~ 401 (600)
T 2ywe_A 389 -N------------------------------P-MDFPDNA----------G----LI---------------------E 401 (600)
T ss_dssp -S------------------------------G-GGSCSCG----------G----GE---------------------E
T ss_pred -C------------------------------h-hhCCCCC----------c----cc---------------------c
Confidence 0 1 3566655 0 00 3
Q ss_pred eeeecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhh-cCchHHHhhhCCCCceeEEEecce
Q 003316 712 RLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHW 790 (831)
Q Consensus 712 ~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y 790 (831)
.||||||+++|.+|++|+|+|+++|++|||++.+++..++ ++..|+|++|++|+ +||.++|||+|+|+|+|+++|+||
T Consensus 402 ~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~-~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y 480 (600)
T 2ywe_A 402 YVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDP-NTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGY 480 (600)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEET-TEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred cccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCC-CEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccc
Confidence 7999999999999999999999999999999999998543 58999999999999 899999999999999999999999
Q ss_pred eec---------CCCCCCC----------ChhHHHHHHHHHH
Q 003316 791 DMM---------SSDPLEP----------GSQASQLVLDIRK 813 (831)
Q Consensus 791 ~~v---------~~d~~~~----------~~~~~~~~~~~r~ 813 (831)
+++ +++|.|. ....++++.+++.
T Consensus 481 ~~~~~~~~~~~~ng~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (600)
T 2ywe_A 481 RPSDLIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLRE 522 (600)
T ss_dssp EECCEEEEEEEESSSBCGGGCEEEEGGGHHHHHHHHHHHHHH
T ss_pred eEccccccccccCCCEeccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999 8888773 2467777777653
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=9.1e-71 Score=643.13 Aligned_cols=474 Identities=26% Similarity=0.413 Sum_probs=354.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
+++|||+|+||+|||||||+++|++.+|.+.+...+ .+++|+.+.|++||+|+.+..+++.|.. .++.
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGiTi~~~~~~~~~~~-----------~~g~ 69 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREME-AQVLDSMDLERERGITIKAQSVTLDYKA-----------SDGE 69 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEEC-----------TTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccccc-ccccccchhhhcccceeeeeEEEEEEec-----------CCCC
Confidence 579999999999999999999999999988765444 5789999999999999999999999962 1234
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcchhhccCCCHHHHHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 164 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~~~~~~~~~~~~~~ 164 (831)
.+.+||||||||.||..++.++++.+|+||+|||+++ +...+.|+++|+||+|+. +++++++.+
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~----~a~~~~v~~ 145 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLP----AADPERVAE 145 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTST----TCCHHHHHH
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcc----cccHHHHHH
Confidence 6899999999999999999999999999999999986 333456666799999999 877555433
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCCc
Q 003316 165 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 244 (831)
Q Consensus 165 ~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~~ 244 (831)
.+.+. +.. .+ ..+...|+..
T Consensus 146 ei~~~-------lg~-----------~~--~~vi~vSAkt---------------------------------------- 165 (599)
T 3cb4_D 146 EIEDI-------VGI-----------DA--TDAVRCSAKT---------------------------------------- 165 (599)
T ss_dssp HHHHH-------TCC-----------CC--TTCEEECTTT----------------------------------------
T ss_pred HHHHH-------hCC-----------Cc--ceEEEeeccc----------------------------------------
Confidence 33221 100 00 0011111100
Q ss_pred eeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHHHHH
Q 003316 245 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 324 (831)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~I 324 (831)
+ . .++.|++++
T Consensus 166 -------g--------------------------------------~------------------------GI~~Ll~~I 176 (599)
T 3cb4_D 166 -------G--------------------------------------V------------------------GVQDVLERL 176 (599)
T ss_dssp -------C--------------------------------------T------------------------THHHHHHHH
T ss_pred -------C--------------------------------------C------------------------CchhHHHHH
Confidence 0 0 024678889
Q ss_pred HhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003316 325 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 404 (831)
Q Consensus 325 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~ 404 (831)
++++|+|. .++++|+.++||++..+++.|. ++++||++|+|++||.++++.
T Consensus 177 ~~~lp~p~-------------------------~~~~~p~~alI~d~~~d~~~G~-v~~~rV~sG~l~~Gd~v~~~~--- 227 (599)
T 3cb4_D 177 VRDIPPPE-------------------------GDPEGPLQALIIDSWFDNYLGV-VSLIRIKNGTLRKGDKVKVMS--- 227 (599)
T ss_dssp HHHSCCCC-------------------------CCTTSCCEEEEEEEEEETTTEE-EEEEEEEESCEESSCEEEETT---
T ss_pred hhcCCCcc-------------------------ccccCCceeeeeeccccccccE-EEEEEEEeCEEecCCEEEecc---
Confidence 99999983 1357899999999999998887 999999999999999999764
Q ss_pred CCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe-cc---ccccccce-eeecCCCCCccccccccccCCceEEE
Q 003316 405 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRV 479 (831)
Q Consensus 405 ~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~-gl---~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~ 479 (831)
++.. ++|.+++.+.+. .++++++.||||+++. |+ +++ ++| |+++.......+++++.++ +|++++
T Consensus 228 -~~~~-----~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~--~~GDtl~~~~~~~~~~l~~~~~~-~P~v~~ 297 (599)
T 3cb4_D 228 -TGQT-----YNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGA--PVGDTLTLARNPAEKALPGFKKV-KPQVYA 297 (599)
T ss_dssp -TCCE-----EECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGS--CTTCEEEESSSCCSSCCTTCCCC-CCCEEE
T ss_pred -ccce-----eEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccC--ccCCEeeecCCccccccccccCC-CcceEE
Confidence 2332 699999998875 8899999999999885 54 455 778 9998766111567788876 999999
Q ss_pred EEEeCCCCCHhHHHHHHHhHhccCCeEEEEEcCCCcEEEEe-----cchHHHHHHHHHHHhhcCCCceEEEcCceEeEEe
Q 003316 480 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE 554 (831)
Q Consensus 480 aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g-----~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrE 554 (831)
+++|.+..|.++|.++|++|.++||+|++. .+|+|.++.| ||||||||+++||+++| ++++.+++|+|+|||
T Consensus 298 ~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~gfr~g~lG~lhlei~~erl~~e~--~~~~~~~~P~V~yre 374 (599)
T 3cb4_D 298 GLFPVSSDDYEAFRDALGKLSLNDASLFYE-PESSSALGFGFRCGFLGLLHMEIIQERLEREY--DLDLITTAPTVVYEV 374 (599)
T ss_dssp EEEESSGGGHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHTS--CCCEEECCCEECEEE
T ss_pred EEEecCccCHHHHHHHHHHHHhhCcEEEEE-eccccccccceEEEeccHHHHHHHHHHHHHHc--CceEEEEeeeEEEEE
Confidence 999999999999999999999999999997 5778777666 99999999999999999 999999999999999
Q ss_pred eeecccceeEeeecCCCeeEEEEEEEeCChhhHHHHHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCce
Q 003316 555 TVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNM 634 (831)
Q Consensus 555 Ti~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n~ 634 (831)
||.+.+.. .+ . .|
T Consensus 375 ti~~g~~~---------------~~-----------~----------------------------------~p------- 387 (599)
T 3cb4_D 375 ETTSREVI---------------YV-----------D----------------------------------SP------- 387 (599)
T ss_dssp EESSSCEE---------------EE-----------S----------------------------------SG-------
T ss_pred EecCCceE---------------Ee-----------c----------------------------------Ch-------
Confidence 98753210 00 0 01
Q ss_pred EEeccccccchHHHHHHHHHHHHHHHHcCCccCCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCeee
Q 003316 635 VVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLL 714 (831)
Q Consensus 635 ~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p~Ll 714 (831)
. ++|..+ .-+.||
T Consensus 388 -------~------------------------~~p~~~------------------------------------~~~~ll 400 (599)
T 3cb4_D 388 -------S------------------------KLPAVN------------------------------------NIYELR 400 (599)
T ss_dssp -------G------------------------GSCCGG------------------------------------GEEEEE
T ss_pred -------h------------------------hCCCcc------------------------------------ccchhh
Confidence 0 112110 002799
Q ss_pred ecEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhh-cCchHHHhhhCCCCceeEEEecceeec
Q 003316 715 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDMM 793 (831)
Q Consensus 715 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 793 (831)
||||+++|.+|++|+|+|+++|++|||++++++..+ ++..|+|++|++|+ +||.++|||+|+|+|+|+++|+||+++
T Consensus 401 EP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~--~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~ 478 (599)
T 3cb4_D 401 EPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHG--NQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQAS 478 (599)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCT--TEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEEC
T ss_pred ccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecC--CeEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEe
Confidence 999999999999999999999999999999999865 48999999999999 899999999999999999999999999
Q ss_pred ---------CCCCCCC----------ChhHHHHHHHHHH
Q 003316 794 ---------SSDPLEP----------GSQASQLVLDIRK 813 (831)
Q Consensus 794 ---------~~d~~~~----------~~~~~~~~~~~r~ 813 (831)
.++|.|. ....++++.+++.
T Consensus 479 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (599)
T 3cb4_D 479 DMVRVDVLINGERVDALALITHRDNSQNRGRELVEKMKD 517 (599)
T ss_dssp CEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred cccccccccCCcEecccceeccHHHHHHHHHHHHHHHHh
Confidence 7776652 2467777777653
No 11
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=2e-60 Score=551.40 Aligned_cols=432 Identities=20% Similarity=0.272 Sum_probs=293.6
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc------cCCceEEecCchhhheeceeeeeceeEEEEeechhhhhc
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE------VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 88 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~------~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~ 88 (831)
...++|||+|+||+|||||||+++|++..|.+... .....+++|+.+.|++||+|+.+....+.|.
T Consensus 9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-------- 80 (529)
T 2h5e_A 9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH-------- 80 (529)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET--------
T ss_pred hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC--------
Confidence 34678999999999999999999999988877541 0111457899999999999999999999885
Q ss_pred cccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcchhhccC
Q 003316 89 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRCFLELQ 156 (831)
Q Consensus 89 ~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~~~~~~ 156 (831)
++.++|||||||.||..++.++++.+|++|+|+|+.+ .+. .+.|.++|+||+|+. +
T Consensus 81 --------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~----~ 148 (529)
T 2h5e_A 81 --------DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRD----I 148 (529)
T ss_dssp --------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSC----C
T ss_pred --------CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCc----c
Confidence 7899999999999999999999999999999999986 122 345656699999999 7
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhccc
Q 003316 157 VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 236 (831)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~ 236 (831)
.++.++.+.+++ .+.. ...| .++|++|+..+.++. |+.....+.|
T Consensus 149 ~~~~~~~~~i~~-------~l~~---------~~~~--~~~pi~sa~~~~Gv~--------------dl~~~~~~~~--- 193 (529)
T 2h5e_A 149 RDPMELLDEVEN-------ELKI---------GCAP--ITWPIGCGKLFKGVY--------------HLYKDETYLY--- 193 (529)
T ss_dssp SCHHHHHHHHHH-------HHCC---------EEEE--SEEEESCGGGCCEEE--------------ETTTTEEEEC---
T ss_pred ccHHHHHHHHHH-------HhCC---------Cccc--eecceecccCcceee--------------ehhhhhHhhh---
Confidence 775544433332 2211 1122 356677765443331 1111111112
Q ss_pred ccCcCCC-ceee-cCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hcc
Q 003316 237 FFDPATR-KWTS-RNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTW 313 (831)
Q Consensus 237 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~ 313 (831)
....+ .+.. .+.+. +.+ + .+.+. .+++++++|+++ .++..+++. ..+.+++. +.+
T Consensus 194 --~~~~g~~~~~~~~i~~------~~~----~--~l~e~---~~~~~~~~~~e~--~~l~~~~~~---~~~~~~~~~~~~ 251 (529)
T 2h5e_A 194 --QSGKGHTIQEVRIVKG------LNN----P--DLDAA---VGEDLAQQLRDE--LELVKGASN---EFDKELFLAGEI 251 (529)
T ss_dssp --CTTCCSSCCCCCEECC------SSC----H--HHHHH---HCHHHHHHHHHH--HHHHHHHSC---CCCHHHHHTTSE
T ss_pred --cccCCCcccccccCCC------CCH----H--HHHHh---hCHHHHHHhhcc--cchhhhhhh---hhhHHHHHhCce
Confidence 11000 0000 00000 000 0 11222 145677777766 222222221 11122332 467
Q ss_pred ccc----------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCC-CCCeEEEEEEeec---CCCCCc
Q 003316 314 LPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDP-EGPLMLYVSKMIP---ASDKGR 379 (831)
Q Consensus 314 ~P~----------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~pl~a~VfK~~~---~~~~g~ 379 (831)
+|+ ++.|||+|++++|+|.+++.. ...+++ ++|++|+|||+.. ++++|+
T Consensus 252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~-----------------~~~~~~~~~~~~~~vfKi~~~~d~~~~G~ 314 (529)
T 2h5e_A 252 TPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD-----------------TRTVEASEDKFTGFVFKIQANMDPKHRDR 314 (529)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS-----------------SCEECTTCCSCEEEEEEECSSCCSSSSCC
T ss_pred eEEEeeecccCCCHHHHHHHHHHhCCCCCccccc-----------------ccccCCCCCCeEEEEEEEeeccCcCCCce
Confidence 775 689999999999999654210 011223 6899999999976 345677
Q ss_pred eeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecC
Q 003316 380 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNE 458 (831)
Q Consensus 380 ~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~ 458 (831)
++|+|||||+|++||.|++.+ .+++ +||++|+.++|.+.+++++|.|||||++.|++++ ++| ||++.
T Consensus 315 -i~~~RV~sG~l~~g~~v~~~~----~~~~-----~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~--~~Gdtl~~~ 382 (529)
T 2h5e_A 315 -VAFMRVVSGKYEKGMKLRQVR----TAKD-----VVISDALTFMAGDRSHVEEAYPGDILGLHNHGTI--QIGDTFTQG 382 (529)
T ss_dssp -CEEEEEEESCEETTCEEEETT----TTEE-----EECSCEECCCC-----CCEECTTCEEEECCSSCC--CTTCEEESS
T ss_pred -EEEEEEecCeEcCCCEEEEee----CCCE-----EEeceeeEEeCCCceEcceECCCCEEEEeccCCC--ccCCEeecC
Confidence 999999999999999999653 2332 7999999999999999999999999999999987 788 99986
Q ss_pred CCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhc
Q 003316 459 KEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDF 537 (831)
Q Consensus 459 ~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f 537 (831)
. ...++++.++ .|+++++|+|+++.|.++|.+||++|.+||| +++..+ +|||++|+|||||||||+++||+++|
T Consensus 383 ~---~~~~~~~~~~-~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey 457 (529)
T 2h5e_A 383 E---MMKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEY 457 (529)
T ss_dssp C---CCCBCCCEEE-CCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHS
T ss_pred C---ccccCCCCCC-CccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHh
Confidence 4 3567888876 9999999999999999999999999999998 888876 89999999999999999999999999
Q ss_pred CCCceEEEcCceEeEEeeeecc
Q 003316 538 MGGAEIIKSDPVVSFRETVLEK 559 (831)
Q Consensus 538 ~~~v~v~~~~p~V~yrETi~~~ 559 (831)
||++.+++|+|+|||||...
T Consensus 458 --~v~v~~~~~~v~y~eti~~~ 477 (529)
T 2h5e_A 458 --NVEAVYESVNVATARWVECA 477 (529)
T ss_dssp --SCCEEEECCCCSEEEEEECS
T ss_pred --CcEEEEecCceeEEEEEcCC
Confidence 99999999999999999643
No 12
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=4e-59 Score=539.82 Aligned_cols=430 Identities=20% Similarity=0.283 Sum_probs=315.8
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccC------CceEEecCchhhheeceeeeeceeEEEEeechhhhhcc
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVA------GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY 89 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~------g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~ 89 (831)
.+++|||+|+||+|+|||||+++|++.+|.+..... ....++|+.+.|++||+|+.+....+.|.
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------- 80 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--------- 80 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET---------
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC---------
Confidence 367899999999999999999999999998865210 11347899999999999999999999885
Q ss_pred ccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcchhhccCC
Q 003316 90 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRCFLELQV 157 (831)
Q Consensus 90 ~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~~~~~~~ 157 (831)
++.+||||||||.||..++.++++.+|+||+|||+.. .+. .+.|.++|+||+|+. +.
T Consensus 81 -------~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~----~~ 149 (528)
T 3tr5_A 81 -------DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRD----TR 149 (528)
T ss_dssp -------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSC----CS
T ss_pred -------CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc----cc
Confidence 8899999999999999999999999999999999987 222 345556699999998 88
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCc--ceeEEeehhHHHHhhhhcCCChHHHHHHhhcc
Q 003316 158 DGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGL--HGWAFTLTNFAKMYASKFGVDESKMMERLWGE 235 (831)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~--~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~ 235 (831)
++.+..+.+++.+. . .+...++|++++. .|. +|+.....+.|.+
T Consensus 150 ~~~~~l~ei~~~l~---~---------------~~~~~~~pig~~~~f~gv----------------~dl~~~~~~~~~~ 195 (528)
T 3tr5_A 150 PSIELLDEIESILR---I---------------HCAPVTWPIGMGKYFKGI----------------YHLIEDAIYLYQP 195 (528)
T ss_dssp CHHHHHHHHHHHHC---C---------------EEEESEEEESCGGGCCEE----------------EETTTTEEEECCT
T ss_pred cHHHHHHHHHHhhC---C---------------CceeeecccccCCceeEE----------------EEeecCEEEEecC
Confidence 76555444333221 0 1112255665542 111 3333332333321
Q ss_pred cccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hccc
Q 003316 236 NFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWL 314 (831)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~ 314 (831)
. ........+ ..... -++ .++..+. ++ +++|+++ +++..++... ..++++. ++++
T Consensus 196 ~----~~~~~~~~~-----~~~~~----~~~---~~~~~l~--~~-~~~~~e~--~~l~~~~~~~---~~~~~~~~~~~~ 251 (528)
T 3tr5_A 196 G----KHERVGESE-----RIEGI----NNP---ELDKKLG--DL-ASELRNE--IELVKGASHP---FEREGYLKGELT 251 (528)
T ss_dssp T----SSSSTTCSC-----EEECT----TCH---HHHHHHT--HH-HHHHHHH--HHHHHHHSCC---CCHHHHHTTSEE
T ss_pred C----CCCcccccc-----ccccc----chH---HHHHHHH--HH-HHHHhhh--cchhhhhhhH---HHHHHHhcCcee
Confidence 0 000000000 00001 111 1111111 11 5666655 2221111110 0022322 5777
Q ss_pred cc----------HHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccC-CCCCeEEEEEEeec--CC-CCCce
Q 003316 315 PA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD-PEGPLMLYVSKMIP--AS-DKGRF 380 (831)
Q Consensus 315 P~----------~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~pl~a~VfK~~~--~~-~~g~~ 380 (831)
|+ ++.|||+|++++|+|.+..... ..++ .++|++|+|||+.. ++ ++|+
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~-----------------~~~~~~~~~~~~~VFKi~~~~dp~~~g~- 313 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAPPPQGRETNS-----------------RLVKPEEEKFSGFVFKIQANMDPGHRDR- 313 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSS-----------------SCBCTTSSSCEEEEEEEEECCC-CCCCE-
T ss_pred EEEeccccCCccHHHHHHHHHHhCCCCCcccccc-----------------eeeCCCcccceeEEEEEecccCccCCce-
Confidence 86 7999999999999996543210 1122 36899999999985 66 7776
Q ss_pred eEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCC
Q 003316 381 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEK 459 (831)
Q Consensus 381 l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~ 459 (831)
++|+|||||+|++||.|++. +++++ +||++++.++|++.++|++|.|||||++.|++++ ++| |||+.
T Consensus 314 l~~~RV~sG~l~~g~~v~~~----~~~~~-----~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~--~~GDtl~~~- 381 (528)
T 3tr5_A 314 IAFLRIASGQYQKGMKAYHV----RLKKE-----IQINNALTFMAGKRENAEEAWPGDIIGLHNHGTI--QIGDTFTQG- 381 (528)
T ss_dssp EEEEEEEESCEETTEEEEET----TTTEE-----EEESSCBCCBTTCSSCCSEECTTCEEEEEESSSC--CTTCEEESS-
T ss_pred EEEEEEecCeEcCCCEEEec----CCCce-----EEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCC--ccCCEEcCC-
Confidence 99999999999999999954 33433 7999999999999999999999999999999987 889 99984
Q ss_pred CCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHhHhccCCeEEEEEc-CCCcEEEEecchHHHHHHHHHHHhhcC
Q 003316 460 EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFM 538 (831)
Q Consensus 460 ~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~ 538 (831)
. ...+.++.++ .|+++++|+|+++.|.++|.+||++|.+|||+ ++..+ +|||++|+|||||||||+++||+++|
T Consensus 382 ~--~~~~~~~~~~-~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey- 456 (528)
T 3tr5_A 382 E--RFKFTGIPNF-ASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEY- 456 (528)
T ss_dssp C--CCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHH-
T ss_pred C--CcccCCCCCC-CCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHh-
Confidence 3 4567788876 89999999999999999999999999999997 67666 89999999999999999999999999
Q ss_pred CCceEEEcCceEeEEeeeecc
Q 003316 539 GGAEIIKSDPVVSFRETVLEK 559 (831)
Q Consensus 539 ~~v~v~~~~p~V~yrETi~~~ 559 (831)
||++.+++|+|+|+|+|...
T Consensus 457 -~v~v~~~~~~v~~~~~i~~~ 476 (528)
T 3tr5_A 457 -NVKCVYESVNVVTARWVICD 476 (528)
T ss_dssp -CCCEEEECCSCCEEEEEECS
T ss_pred -CcEEEEecCceEEEEEecCC
Confidence 99999999999999999753
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.2e-38 Score=339.67 Aligned_cols=196 Identities=22% Similarity=0.385 Sum_probs=159.3
Q ss_pred EEeccccccccce-eeecCCCCCccccccccccCCceEEEEEEeCCC----CC-----HhHHHHHHHhHhccCCeEEEEE
Q 003316 441 AMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVA----SD-----LPKLVEGLKRLAKSDPMVVCSM 510 (831)
Q Consensus 441 ai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~~----~d-----~~kL~~aL~~L~~eDPsl~v~~ 510 (831)
|++||+++ ++| |||+... +.+++++.++ +|+++++|+|.+. .| ..+|.++|.+|.++||+|+|+.
T Consensus 2 av~Gl~~~--~iGDTl~~~~~--p~~L~~~~~~-ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~ 76 (332)
T 3e3x_A 2 NATGLGEL--KISDTICAQNA--VEALPALSVD-EPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQ 76 (332)
T ss_dssp -------------------------------CC-CCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CccCCCCC--ccCCEEcCCCC--cccCCCCCCC-CCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEE
Confidence 57899887 788 9999877 7788889886 9999999999987 65 6799999999999999999999
Q ss_pred c-CCCcEEEEecchHHHHHHHHHHHhhcCCCceEEEcCceEeEEeeeecccceeEeeecCCCeeEEEEEEEeCChhhHHH
Q 003316 511 E-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEA 589 (831)
Q Consensus 511 ~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~ 589 (831)
+ +++|++|+|||||||||+++||+++ |+++.+++|+|+|||| .
T Consensus 77 ~~~t~~~~v~G~GELHLeIl~ErLrrE---g~ev~v~~P~V~YrEt----~----------------------------- 120 (332)
T 3e3x_A 77 TDDPDKFRVSGRGELHLSILIENMRRE---GFELAVSRPEVIIXEE----D----------------------------- 120 (332)
T ss_dssp CSSTTEEEEEESSHHHHHHHHHHHHHH---TBCEEECCCEECCEEE----T-----------------------------
T ss_pred cCCCCeEEEEeeCHHHHHHHHHHHHhc---CceEEEeCCEEEEEEE----C-----------------------------
Confidence 8 8999999999999999999999997 8999999999999996 0
Q ss_pred HHcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCceEEeccccccchHHHHHHHHHHHHHHHHcCCccCCC
Q 003316 590 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 669 (831)
Q Consensus 590 i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~g~p 669 (831)
|
T Consensus 121 ---------------------------------------------------G---------------------------- 121 (332)
T 3e3x_A 121 ---------------------------------------------------G---------------------------- 121 (332)
T ss_dssp ---------------------------------------------------T----------------------------
T ss_pred ---------------------------------------------------C----------------------------
Confidence 1
Q ss_pred ceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeeeecc
Q 003316 670 MRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQR 749 (831)
Q Consensus 670 v~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~ 749 (831)
+||||||+++|.||++++|+|+++|++|||+|.+++..
T Consensus 122 ------------------------------------------~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~ 159 (332)
T 3e3x_A 122 ------------------------------------------QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPD 159 (332)
T ss_dssp ------------------------------------------EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEC
T ss_pred ------------------------------------------EEECcEEEEEEEECHHHHHHHHHHHHhhcccccCceEC
Confidence 78999999999999999999999999999999999986
Q ss_pred CCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEEEecceeec-CCCCCC
Q 003316 750 PGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMM-SSDPLE 799 (831)
Q Consensus 750 ~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v-~~d~~~ 799 (831)
++ +++.|+|++|++|||||.++|||+|+|+|+|+++|+||+++ |++.-.
T Consensus 160 ~~-g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~~ 209 (332)
T 3e3x_A 160 GK-GRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIGQ 209 (332)
T ss_dssp SS-SEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCSC
T ss_pred CC-CeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCcccc
Confidence 43 58899999999999999999999999999999999999999 898643
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.95 E-value=3.6e-26 Score=259.77 Aligned_cols=276 Identities=20% Similarity=0.310 Sum_probs=188.3
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc----------CCc-----eEEecCchhhheeceeeeeceeEEEEe
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLYYE 80 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~e~~rgiTi~~~~~~~~~~ 80 (831)
.+..+||+++||+|+|||||+++|++.+|.+.+.. .|+ .+.+|..++|++||+|++.....+.+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35678999999999999999999999999887642 121 357899999999999999998888775
Q ss_pred echhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------------HhhhCCC-
Q 003316 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------------ALGERIR- 140 (831)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------------~~~~~~~- 140 (831)
++.++|||||||.+|...+..+++.+|++|||||+.+ +...+.|
T Consensus 94 ----------------~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~ 157 (439)
T 3j2k_7 94 ----------------KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH 157 (439)
T ss_pred ----------------CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCe
Confidence 7899999999999999999999999999999999964 1223456
Q ss_pred cEEEEecCcchhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeec-CceeeeccCcceeEEeehhHHHHhhh
Q 003316 141 PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPE-KGTVAFSAGLHGWAFTLTNFAKMYAS 219 (831)
Q Consensus 141 ~ii~iNKiD~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~-~~~v~~~s~~~g~~~~~~~~a~~~~~ 219 (831)
.++++||||+. ..+..+ ..+.++.+++..++..+.. .+. ..++...|+..|++..-
T Consensus 158 iIvviNK~Dl~----~~~~~~--~~~~~i~~~~~~~l~~~g~--------~~~~~~~~i~iSA~~G~ni~~--------- 214 (439)
T 3j2k_7 158 LIVLINKMDDP----TVNWSN--ERYEECKEKLVPFLKKVGF--------NPKKDIHFMPCSGLTGANLKE--------- 214 (439)
T ss_pred EEEEeecCCCc----ccchHH--HHHHHHHHHHHHHHHHhcc--------cccCCeeEEEeeccCCccccc---------
Confidence 45699999997 443211 2344444554444432211 110 11233345544432210
Q ss_pred hcCCChHHHHHHhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHH
Q 003316 220 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 299 (831)
Q Consensus 220 ~~~i~~~~l~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~ 299 (831)
+...+ .|..
T Consensus 215 --------l~~~~-----------~w~~---------------------------------------------------- 223 (439)
T 3j2k_7 215 --------QSDFC-----------PWYI---------------------------------------------------- 223 (439)
T ss_pred --------ccccc-----------cccC----------------------------------------------------
Confidence 00000 0100
Q ss_pred HhHHHHHHHHHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCc
Q 003316 300 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGR 379 (831)
Q Consensus 300 ~~~~~l~~~i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~ 379 (831)
...|++.+ +.+|.|. .+.+.|+.+.|..++. +.|.
T Consensus 224 -----------------g~~L~~~l-~~i~~~~-------------------------~~~~~p~r~~v~~~~~--~~G~ 258 (439)
T 3j2k_7 224 -----------------GLPFIPYL-DNLPNFN-------------------------RSVDGPIRLPIVDKYK--DMGT 258 (439)
T ss_pred -----------------chHHHHHH-HhCCCCc-------------------------cCCCCCeEEEEEEEEc--CCCe
Confidence 01233322 2355552 1235788888888754 3465
Q ss_pred eeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEE--Eeccccccccce-eee
Q 003316 380 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVA--MVGLDQYITKNA-TLT 456 (831)
Q Consensus 380 ~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIva--i~gl~~~~~~tg-Tl~ 456 (831)
+..+||.+|+|++||.|.++..+ . ..+|..|.. ...++++|.|||+|+ +.|++....+.| +|+
T Consensus 259 -v~~G~v~~G~l~~Gd~v~~~p~~----~-----~~~V~~i~~----~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~ 324 (439)
T 3j2k_7 259 -VVLGKLESGSIFKGQQLVMMPNK----H-----NVEVLGILS----DDTETDFVAPGENLKIRLKGIEEEEILPGFILC 324 (439)
T ss_pred -EEEEEEEeeEEecCCEEEEccCC----c-----eEEEEEEEE----CCeEcCEecCCCcceEEEeccchhhcCCcEEec
Confidence 89999999999999999986532 2 268888865 456899999999999 668776555778 887
Q ss_pred cCCC
Q 003316 457 NEKE 460 (831)
Q Consensus 457 ~~~~ 460 (831)
++..
T Consensus 325 ~~~~ 328 (439)
T 3j2k_7 325 DPSN 328 (439)
T ss_pred CCCC
Confidence 7654
No 15
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.94 E-value=2e-26 Score=259.89 Aligned_cols=284 Identities=24% Similarity=0.335 Sum_probs=183.9
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHH---cCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccc
Q 003316 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAA---AGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 90 (831)
Q Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~---~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~ 90 (831)
.......||+++||+|||||||+++|+.. .|..... .. ...+|..++|+++|+|+......+.+.
T Consensus 6 ~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~-~~-~~~~d~~~~e~~~GiTi~~~~~~~~~~---------- 73 (405)
T 2c78_A 6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEV-KD-YGDIDKAPEERARGITINTAHVEYETA---------- 73 (405)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCC-CC-HHHHSCSHHHHHHTCCCSCEEEEEECS----------
T ss_pred cCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccc-cc-hhhccCCHHHHHcCCCEEeeeeEeccC----------
Confidence 34456789999999999999999999874 2210000 01 125788999999999999877666553
Q ss_pred cccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCC-cEEEEecCcchhhccCC
Q 003316 91 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIR-PVLTVNKMDRCFLELQV 157 (831)
Q Consensus 91 ~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~-~ii~iNKiD~~~~~~~~ 157 (831)
++.++|||||||.+|...+.++++.+|++|+|||+.+ .+ ..+.| .++|+||+|+. +
T Consensus 74 ------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~----~- 142 (405)
T 2c78_A 74 ------KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV----D- 142 (405)
T ss_dssp ------SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC----C-
T ss_pred ------CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc----C-
Confidence 6899999999999999999999999999999999986 12 23455 35699999987 4
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccc
Q 003316 158 DGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 237 (831)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~ 237 (831)
+. +. +..+.+++...+..+.. .+...++...|+..|++. .+. ..
T Consensus 143 ~~-~~---~~~~~~~~~~~l~~~~~--------~~~~~~~i~~SA~~g~~v--------------------~~~--~~-- 186 (405)
T 2c78_A 143 DP-EL---LDLVEMEVRDLLNQYEF--------PGDEVPVIRGSALLALEQ--------------------MHR--NP-- 186 (405)
T ss_dssp CH-HH---HHHHHHHHHHHHHHTTS--------CTTTSCEEECCHHHHHHH--------------------HHH--CT--
T ss_pred cH-HH---HHHHHHHHHHHHHHhcc--------cccCCCEEEccHHHhhhh--------------------hcc--cc--
Confidence 32 21 22222233333332110 000112223343222100 000 00
Q ss_pred cCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccH
Q 003316 238 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPAS 317 (831)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~ 317 (831)
.+.. + . ..|.+.+
T Consensus 187 ------~~~~----~--------------------------------------~-------------------~~~~~~i 199 (405)
T 2c78_A 187 ------KTRR----G--------------------------------------E-------------------NEWVDKI 199 (405)
T ss_dssp ------TCCT----T--------------------------------------S-------------------CHHHHHH
T ss_pred ------cccc----C--------------------------------------C-------------------CcccccH
Confidence 0000 0 0 0011113
Q ss_pred HHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEE
Q 003316 318 SALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKV 397 (831)
Q Consensus 318 ~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l 397 (831)
..|++++.+++|.|.. +.++|+.+.|..++..++.|. ++++||++|+|+.||.|
T Consensus 200 ~~Ll~~l~~~lp~p~~-------------------------~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v 253 (405)
T 2c78_A 200 WELLDAIDEYIPTPVR-------------------------DVDKPFLMPVEDVFTITGRGT-VATGRIERGKVKVGDEV 253 (405)
T ss_dssp HHHHHHHHHHSCCCCC-------------------------CCSSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEE
T ss_pred HHHHHHHHhhcCCCCC-------------------------CCCCCcEEEEEEEEEcCCCce-EEEEEEecccccCCCEE
Confidence 5789999999998831 235789998888877777776 89999999999999999
Q ss_pred EEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eeecCC
Q 003316 398 RIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 459 (831)
Q Consensus 398 ~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl~~~~ 459 (831)
++++.+. + ....+|..|... ..++++|.|||++++. |++....+.| +|+++.
T Consensus 254 ~~~~~~~--~----~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 254 EIVGLAP--E----TRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp EEESSSS--S----CEEEEEEEEEET----TEEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred EEeCCCC--C----eeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 9875421 0 013688888643 3679999999999876 6643334678 888754
No 16
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.94 E-value=1.1e-26 Score=261.00 Aligned_cols=271 Identities=21% Similarity=0.301 Sum_probs=180.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..||+++||+|||||||+++|+...........-..+.+|..++|+++|+|+......+.+. ++
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------------~~ 66 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA----------------AR 66 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS----------------SC
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC----------------Ce
Confidence 46899999999999999999987531100000000124788889999999999876655543 68
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCCc-EEEEecCcchhhccCCCHHHHHHH
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIRP-VLTVNKMDRCFLELQVDGEEAYQT 165 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~~-ii~iNKiD~~~~~~~~~~~~~~~~ 165 (831)
.++|||||||.+|..++.++++.+|++|+|||+.+ .+ ..+.|. ++|+||+|+. + +. +.
T Consensus 67 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~----~-~~-~~--- 137 (397)
T 1d2e_A 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV----Q-DS-EM--- 137 (397)
T ss_dssp EEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC----S-CH-HH---
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC----C-CH-HH---
Confidence 99999999999999999999999999999999986 12 234564 5699999987 4 22 21
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCCCce
Q 003316 166 FQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKW 245 (831)
Q Consensus 166 l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~~~~ 245 (831)
+..+.+++...+..+.. .+...++...|+..|+ +
T Consensus 138 ~~~~~~~~~~~l~~~~~--------~~~~~~~i~~SA~~g~---------------------------n----------- 171 (397)
T 1d2e_A 138 VELVELEIRELLTEFGY--------KGEETPIIVGSALCAL---------------------------E----------- 171 (397)
T ss_dssp HHHHHHHHHHHHHHTTS--------CTTTSCEEECCHHHHH---------------------------T-----------
T ss_pred HHHHHHHHHHHHHHcCC--------CcccCcEEEeehhhcc---------------------------c-----------
Confidence 22222333333322110 0000012222221110 0
Q ss_pred eecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhccccc-HHHHHHHH
Q 003316 246 TSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPA-SSALLEMM 324 (831)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~-~~~LLd~I 324 (831)
. .. ..|... +..|++++
T Consensus 172 -------------------------------~-------------~~------------------~~~~~g~i~~Ll~~l 189 (397)
T 1d2e_A 172 -------------------------------Q-------------RD------------------PELGLKSVQKLLDAV 189 (397)
T ss_dssp -------------------------------T-------------CC------------------TTTTHHHHHHHHHHH
T ss_pred -------------------------------c-------------cC------------------CCccCCcHHHHHHHH
Confidence 0 00 001001 24688899
Q ss_pred HhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003316 325 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 404 (831)
Q Consensus 325 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~ 404 (831)
.+++|.|.. +.++|+.+.|++++..++.|. ++++||++|+|++||.|++++.+.
T Consensus 190 ~~~~p~p~~-------------------------~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v~~~~~~~ 243 (397)
T 1d2e_A 190 DTYIPVPTR-------------------------DLEKPFLLPVESVYSIPGRGT-VVTGTLERGILKKGDECEFLGHSK 243 (397)
T ss_dssp HHHSCCCCC-------------------------CTTSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEEETTE
T ss_pred HHhCCCCCC-------------------------CCCCcEEEEEEEEEEeCCceE-EEEEEEeeceEeCCCEEEEeCCCC
Confidence 999998831 245789999999888888886 899999999999999999875320
Q ss_pred CCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eeecCC
Q 003316 405 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 459 (831)
Q Consensus 405 ~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl~~~~ 459 (831)
. ...+|..|... ..++++|.|||++++. |++....+.| +|+++.
T Consensus 244 ---~----~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 244 ---N----IRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp ---E----EEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred ---C----eEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 0 12688887543 3678999999999876 6643334678 888754
No 17
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.94 E-value=6.9e-27 Score=273.41 Aligned_cols=328 Identities=18% Similarity=0.204 Sum_probs=200.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccc--ccCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG--ERQG 95 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~--~~~~ 95 (831)
+..+|+|+||+|||||||+++|+..... ++ ..+|+|.+.+...+.|............ ..+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~------------~~----e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~ 67 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA------------SR----EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS------------CC--------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc------------cc----cCCceecccCeEEEeechhhhhcccccccccccc
Confidence 4568999999999999999999765321 10 0145666655554444210000000000 0001
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcchhhc---cC----
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRCFLE---LQ---- 156 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~~~~---~~---- 156 (831)
....++|||||||.+|..++.++++.+|++|+|+|+++ .+. .+.|.++|+||+|+.-.. .+
T Consensus 68 ~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchH
Confidence 22369999999999999999999999999999999987 222 345556799999996210 00
Q ss_pred ----CCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHh
Q 003316 157 ----VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERL 232 (831)
Q Consensus 157 ----~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~l 232 (831)
...+++.+.|.+.+.++...+.... +.+. .|. . + ..
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~g--------l~~e----------------------~~~-~--l-----~~-- 187 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEG--------FESE----------------------RFD-R--V-----TD-- 187 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTT--------CEEE----------------------EGG-G--C-----SC--
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcC--------cchH----------------------HHH-H--H-----Hh--
Confidence 1123344444444444332222100 0000 000 0 0 00
Q ss_pred hcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhc
Q 003316 233 WGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQT 312 (831)
Q Consensus 233 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~ 312 (831)
|+ ..+...+..+ ..+ .
T Consensus 188 ~~--------~~vpvv~vSA----------------------~tG-------------~--------------------- 203 (594)
T 1g7s_A 188 FA--------SQVSIIPISA----------------------ITG-------------E--------------------- 203 (594)
T ss_dssp TT--------TEEEEEECCT----------------------TTC-------------T---------------------
T ss_pred cc--------CcceEEEEec----------------------cCC-------------C---------------------
Confidence 00 0000000000 000 0
Q ss_pred ccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEec
Q 003316 313 WLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVA 392 (831)
Q Consensus 313 ~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~ 392 (831)
.+..||+++..++|+|.+. ...+++++|+.++|||+..+++.|. ++++||++|+|+
T Consensus 204 ---GI~eLl~~I~~~~~~~~~~--------------------~l~~~~~~p~~~~V~~~~~d~g~G~-v~~~rV~~G~Lk 259 (594)
T 1g7s_A 204 ---GIPELLTMLMGLAQQYLRE--------------------QLKIEEDSPARGTILEVKEETGLGM-TIDAVIYDGILR 259 (594)
T ss_dssp ---THHHHHHHHHHHHHHHCSG--------------------GGEECTTSBCEEEEEEEEEETTEEE-EEEEEEEESEEE
T ss_pred ---CchhHHHHHHhhccccchh--------------------hhccccCCCceeEEEEEEEeCCcEE-EEEEEEeeCEEe
Confidence 1245677777777665321 0124567899999999999888776 999999999999
Q ss_pred CCCEEEEcCCCCCCCCccccceeeeeeEEEEe--------cCceeeecccc--CCCEEEEeccccccccce-eeecCCCC
Q 003316 393 TGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM--------GKKQETVEDVP--CGNTVAMVGLDQYITKNA-TLTNEKEV 461 (831)
Q Consensus 393 ~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~--------g~~~~~v~~a~--AGdIvai~gl~~~~~~tg-Tl~~~~~~ 461 (831)
+||.|++.+.+ .. ...||..|+.+. |....++++|. ||++|++.||+++ .+| ||+...+.
T Consensus 260 ~Gd~v~~~~~~----~~---~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~--~~Gd~l~~~~~~ 330 (594)
T 1g7s_A 260 KDDTIAMMTSK----DV---ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV--MAGSPLRVVTDP 330 (594)
T ss_dssp TTCEEEEEBSS----SE---EEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB--CTTCEEEECSSH
T ss_pred eCCEEEECCCC----Cc---eeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCC--CCCCEEEecCCH
Confidence 99999976421 21 125999999873 67788999998 9999999999987 788 88876541
Q ss_pred C------ccccccccccCCceEEEEEEeCCCCCHhHHHHHHHhH
Q 003316 462 D------AHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 499 (831)
Q Consensus 462 ~------~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L 499 (831)
+ ...+..+... .+.+.+.|.+...+..++|.++|.++
T Consensus 331 ~~~~~~~~~~~~~~~~~-~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 331 EKVREEILSEIEDIKID-TDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp HHHHHHHHHHHHTTSCB-CSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccc-cccccEEEEeCCCCCHHHHHHHHHhC
Confidence 0 0012233333 66778888889999999999999887
No 18
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.93 E-value=4.8e-26 Score=258.90 Aligned_cols=119 Identities=34% Similarity=0.535 Sum_probs=88.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc----------CCc-----eEEecCchhhheeceeeeeceeEEEEee
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLYYEM 81 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~e~~rgiTi~~~~~~~~~~~ 81 (831)
+..+||+++||+|||||||+++|++.+|.+.+.. .|. .+.+|+.++|++||+|+......+.+.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~- 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK- 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence 4679999999999999999999999987765421 121 145899999999999999988777764
Q ss_pred chhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------------H-hhhCCCc-
Q 003316 82 TDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------------A-LGERIRP- 141 (831)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------------~-~~~~~~~- 141 (831)
++.++|||||||.+|..++.++++.+|++|+|||+.+ . ...+.++
T Consensus 83 ---------------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~i 147 (435)
T 1jny_A 83 ---------------KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQL 147 (435)
T ss_dssp ---------------SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTC
T ss_pred ---------------CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeE
Confidence 7899999999999999999999999999999999975 1 1124554
Q ss_pred EEEEecCcch
Q 003316 142 VLTVNKMDRC 151 (831)
Q Consensus 142 ii~iNKiD~~ 151 (831)
++++||+|+.
T Consensus 148 ivviNK~Dl~ 157 (435)
T 1jny_A 148 IVAVNKMDLT 157 (435)
T ss_dssp EEEEECGGGS
T ss_pred EEEEEcccCC
Confidence 5699999998
No 19
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.9e-26 Score=270.66 Aligned_cols=276 Identities=22% Similarity=0.304 Sum_probs=153.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc----------CCc-----eEEecCchhhheeceeeeeceeEEEEee
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLYYEM 81 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~e~~rgiTi~~~~~~~~~~~ 81 (831)
+.++||+|+||+|||||||+++|++.++.+.... .|. .+++|..++|+++|+|+......+.+.
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 5689999999999999999999999988776431 121 458999999999999999998888774
Q ss_pred chhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecH----------H---------HhhhCCCc-
Q 003316 82 TDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI----------E---------ALGERIRP- 141 (831)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~----------~---------~~~~~~~~- 141 (831)
++.++|||||||.+|...+.++++.+|+||||||+. . +...+.|+
T Consensus 254 ---------------~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~i 318 (592)
T 3mca_A 254 ---------------KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEI 318 (592)
T ss_dssp --------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCE
T ss_pred ---------------CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeE
Confidence 689999999999999999999999999999999997 2 22235554
Q ss_pred EEEEecCcchhhccCCCHHHHHHHHHHHHHHhhhhh-hhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhh
Q 003316 142 VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIM-ATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASK 220 (831)
Q Consensus 142 ii~iNKiD~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~ 220 (831)
|+|+||||+. +++.+. +..+.+++...+ ..+. +.+...++...|+..|++..-..
T Consensus 319 IvviNKiDl~----~~~~~~----~~~i~~el~~~l~~~~g--------~~~~~~~ii~iSA~~G~gI~e~~-------- 374 (592)
T 3mca_A 319 VVSVNKLDLM----SWSEDR----FQEIKNIVSDFLIKMVG--------FKTSNVHFVPISAISGTNLIQKD-------- 374 (592)
T ss_dssp EEEEECGGGG----TTCHHH----HHHHHHHHHHHHTTTSC--------CCGGGEEEEEECSSSCSSSCSCC--------
T ss_pred EEEEeccccc----cccHHH----HHHHHHHHHHHHHHhhC--------CCccceEEEEEecccCccccccc--------
Confidence 5599999998 766433 444444544444 2211 11111123344555443221000
Q ss_pred cCCChHHHHHHhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHH
Q 003316 221 FGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKEL 300 (831)
Q Consensus 221 ~~i~~~~l~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~ 300 (831)
... .. .|
T Consensus 375 ----~~~--~~------------~w------------------------------------------------------- 381 (592)
T 3mca_A 375 ----SSD--LY------------KW------------------------------------------------------- 381 (592)
T ss_dssp ----CCG--GG------------GT-------------------------------------------------------
T ss_pred ----ccc--cc------------cc-------------------------------------------------------
Confidence 000 00 01
Q ss_pred hHHHHHHHHHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCce
Q 003316 301 MGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRF 380 (831)
Q Consensus 301 ~~~~l~~~i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~ 380 (831)
.-. ..|++++..++|.+ .+.+.|+.+.|..++.. ..|.
T Consensus 382 -------------~~g-~~Lle~l~~~~pp~--------------------------~~~~~p~r~~v~~v~~~-~~g~- 419 (592)
T 3mca_A 382 -------------YKG-PTLLSALDQLVPPE--------------------------KPYRKPLRLSIDDVYRS-PRSV- 419 (592)
T ss_dssp -------------CCS-CCHHHHHHTSCCCS--------------------------CTTTSCCEEEEEEEEEE-TTEE-
T ss_pred -------------cch-HHHHHHHHhhcccc--------------------------ccccccchheeeEEEec-CCeE-
Confidence 000 13566666666632 12357888888888776 5554
Q ss_pred eEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeec-cccCCCEEEE--eccccccccce-eee
Q 003316 381 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE-DVPCGNTVAM--VGLDQYITKNA-TLT 456 (831)
Q Consensus 381 l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~-~a~AGdIvai--~gl~~~~~~tg-Tl~ 456 (831)
+..+||.+|+|++||.|.+++.+ . ..+|..|.. ...+++ +|.|||+|++ .|++...++.| +|+
T Consensus 420 v~~G~v~~G~l~~Gd~v~i~p~~----~-----~~~V~~i~~----~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~ 486 (592)
T 3mca_A 420 TVTGRVEAGNVQVNQVLYDVSSQ----E-----DAYVKNVIR----NSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILS 486 (592)
T ss_dssp EEEEEEEESEEETTCEEEETTTT----E-----EEEEEEEEC----SSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEE
T ss_pred EEEEEEeeeeEccCCEEEEccCC----c-----eEEEEEEEE----cCccCcceecCCCEEEEEEccccccccceEEEec
Confidence 88999999999999999986432 2 258888874 235789 9999999985 57665445778 888
Q ss_pred cCCC
Q 003316 457 NEKE 460 (831)
Q Consensus 457 ~~~~ 460 (831)
++..
T Consensus 487 ~~~~ 490 (592)
T 3mca_A 487 NYEN 490 (592)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 7654
No 20
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.93 E-value=6.9e-25 Score=252.65 Aligned_cols=291 Identities=20% Similarity=0.323 Sum_probs=176.0
Q ss_pred HHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc----------CCc-----eEEecCchhhheeceeeeece
Q 003316 10 RRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTG 74 (831)
Q Consensus 10 ~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~e~~rgiTi~~~~ 74 (831)
.+.+...+...||+++||+|+|||||+++|++..+.+.... .|. .+++|....|+++|+|+....
T Consensus 24 ~~~l~~~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~ 103 (483)
T 3p26_A 24 SAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICT 103 (483)
T ss_dssp HHHHHHSCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCE
T ss_pred HHHHhcCCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeee
Confidence 33444456678999999999999999999999988776531 221 357899999999999999998
Q ss_pred eEEEEeechhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------------Hh
Q 003316 75 ISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------------AL 135 (831)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------------~~ 135 (831)
..+.+. ++.++|||||||.+|...+..+++.+|++|+|||+.+ +.
T Consensus 104 ~~~~~~----------------~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~ 167 (483)
T 3p26_A 104 SHFSTH----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS 167 (483)
T ss_dssp EEEECS----------------SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHH
T ss_pred EEEecC----------------CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHH
Confidence 887764 7899999999999999999999999999999999964 11
Q ss_pred hhCCCc-EEEEecCcchhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHH
Q 003316 136 GERIRP-VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFA 214 (831)
Q Consensus 136 ~~~~~~-ii~iNKiD~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a 214 (831)
..+.++ |+++||+|+. +.+.. .+.++.+++...+..+.. .+...++...|+..|++..-
T Consensus 168 ~~~~~~iIvviNK~Dl~----~~~~~----~~~~i~~~~~~~l~~~g~--------~~~~~~~i~iSA~~g~gi~e---- 227 (483)
T 3p26_A 168 SLGIHNLIIAMNKMDNV----DWSQQ----RFEEIKSKLLPYLVDIGF--------FEDNINWVPISGFSGEGVYK---- 227 (483)
T ss_dssp HTTCCCEEEEEECGGGG----TTCHH----HHHHHHHHHHHHHHHHTC--------CGGGEEEEECCSSSCTTSSS----
T ss_pred HcCCCcEEEEEECcCcc----cchHH----HHHHHHHHHHHHHHHcCC--------CcccceEEEEeeecCCCccc----
Confidence 224454 5599999998 65422 233333333333322110 11111233345543321100
Q ss_pred HHhhhhcCCChHHHHHHhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCC
Q 003316 215 KMYASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMK 294 (831)
Q Consensus 215 ~~~~~~~~i~~~~l~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~ 294 (831)
+. ......-| |. .
T Consensus 228 --------l~-~~~~~~~w----y~--------g---------------------------------------------- 240 (483)
T 3p26_A 228 --------IE-YTDEVRQW----YN--------G---------------------------------------------- 240 (483)
T ss_dssp --------SC-CCHHHHHH----CC--------S----------------------------------------------
T ss_pred --------cC-cccccccc----cC--------C----------------------------------------------
Confidence 00 00000011 00 0
Q ss_pred HHHHHHhHHHHHHHHHhcccccHHHHHHHHHhcCCC--chhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEee
Q 003316 295 SEEKELMGKALMKRVMQTWLPASSALLEMMIFHLPS--PATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMI 372 (831)
Q Consensus 295 ~~el~~~~~~l~~~i~~~~~P~~~~LLd~I~~~lPs--P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~ 372 (831)
|....+|+.+...+|. |. .+.+.|+.+.|..++
T Consensus 241 --------------------~~L~~~L~~i~~~~~~~~p~-------------------------~~~~~p~r~~v~~v~ 275 (483)
T 3p26_A 241 --------------------PNLMSTLENAAFKISKENEG-------------------------INKDDPFLFSVLEII 275 (483)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHTT-------------------------CCSSSCCEEEEEEEE
T ss_pred --------------------CCHHHHHHHHHhhccccccc-------------------------ccCCCceEEEEEEEE
Confidence 0112345555444443 21 124578888888877
Q ss_pred cCCC---CCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEe----cCceeeeccccCCCEEEEe--
Q 003316 373 PASD---KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVAMV-- 443 (831)
Q Consensus 373 ~~~~---~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~----g~~~~~v~~a~AGdIvai~-- 443 (831)
..+. .|. +..+||.+|+|++||.|.++..+ . ..+|..|.... |....++++|.|||+|++.
T Consensus 276 ~~~~~~g~g~-v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~ 345 (483)
T 3p26_A 276 PSKKTSNDLA-LVSGKLESGSIQPGESLTIYPSE----Q-----SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLR 345 (483)
T ss_dssp C---CCSCCE-EEEEEEEESEECTTCEEEEETTT----E-----EEEEEEEEETTTC-----CCEESCEETTCEEEEEEE
T ss_pred ccCCcCCCce-EEEEEEecceEccCCEEEEeCCC----C-----eEEEEEEEEcCccccccccccccEECCCCEEEEEEE
Confidence 6442 444 89999999999999999987532 2 26888888653 4557899999999999883
Q ss_pred cc--ccccccce-eeecCCC
Q 003316 444 GL--DQYITKNA-TLTNEKE 460 (831)
Q Consensus 444 gl--~~~~~~tg-Tl~~~~~ 460 (831)
++ ++. +.| +|+++..
T Consensus 346 ~~~~~di--~rG~vl~~~~~ 363 (483)
T 3p26_A 346 KAYPEDI--QNGDLAASVDY 363 (483)
T ss_dssp SCCGGGC--CTTCEEECTTC
T ss_pred ecccccC--CceEEEEcCCC
Confidence 33 443 677 8887543
No 21
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.93 E-value=5.4e-25 Score=252.08 Aligned_cols=127 Identities=28% Similarity=0.420 Sum_probs=73.5
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc----------cCCc-----eEEecCchhhheeceeee
Q 003316 7 EELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIK 71 (831)
Q Consensus 7 ~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~e~~rgiTi~ 71 (831)
+.++.+.. +...||+++||+|||||||+++|++.+|.+.+. ..|. .+.+|..++|+++|+|+.
T Consensus 33 ~~~~~~~~--k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~ 110 (467)
T 1r5b_A 33 ELLKDMYG--KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVE 110 (467)
T ss_dssp TTHHHHSC--CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC--------------------------
T ss_pred HHHHhhcC--CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEE
Confidence 34444443 567899999999999999999999998877531 1232 357899999999999999
Q ss_pred eceeEEEEeechhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------------
Q 003316 72 STGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------------ 133 (831)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------------ 133 (831)
.....+.+. ++.++|||||||.+|..++.++++.+|++|||||+.+
T Consensus 111 ~~~~~~~~~----------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~ 174 (467)
T 1r5b_A 111 VGRAYFETE----------------HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV 174 (467)
T ss_dssp --CCEEECS----------------SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH
T ss_pred eeeEEEecC----------------CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHH
Confidence 988877764 7899999999999999999999999999999999864
Q ss_pred -HhhhCCC-cEEEEecCcch
Q 003316 134 -ALGERIR-PVLTVNKMDRC 151 (831)
Q Consensus 134 -~~~~~~~-~ii~iNKiD~~ 151 (831)
+...+.| .++++||||+.
T Consensus 175 ~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 175 LARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp HHHHTTCSSEEEEEECTTST
T ss_pred HHHHcCCCEEEEEEECccCC
Confidence 1123455 45699999996
No 22
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.92 E-value=1.3e-24 Score=263.05 Aligned_cols=273 Identities=21% Similarity=0.327 Sum_probs=167.0
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
.....||+++||+|||||||+++|+...........-..+.+|..++|+++|+|+....+.+.+.
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~--------------- 357 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP--------------- 357 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS---------------
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC---------------
Confidence 34578999999999999999999987521000000001235788899999999999887766553
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCc-EEEEecCcchhhccCCCHHHH
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRP-VLTVNKMDRCFLELQVDGEEA 162 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~-ii~iNKiD~~~~~~~~~~~~~ 162 (831)
++.++|||||||.+|...+.++++.+|++|+|||+.+ +...+.|. |+|+||+|+. + +. +
T Consensus 358 -~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv----~-d~-e- 429 (1289)
T 3avx_A 358 -TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV----D-DE-E- 429 (1289)
T ss_dssp -SCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC----C-CH-H-
T ss_pred -CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc----c-ch-h-
Confidence 7899999999999999999999999999999999986 22235664 5699999987 4 21 2
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHhhhhcCCChHHHHHHhhcccccCcCC
Q 003316 163 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 242 (831)
Q Consensus 163 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~lw~~~~~~~~~ 242 (831)
.+..+.+++...+..+.. .+...++...|+..||.
T Consensus 430 --~le~i~eEi~elLk~~G~--------~~~~vp~IpvSAktG~n----------------------------------- 464 (1289)
T 3avx_A 430 --LLELVEMEVRELLSQYDF--------PGDDTPIVRGSALKALE----------------------------------- 464 (1289)
T ss_dssp --HHHHHHHHHHHHHHHTTS--------CTTTCCEEECCSTTTTT-----------------------------------
T ss_pred --hHHHHHHHHHHHHHhccc--------cccceeEEEEEeccCCC-----------------------------------
Confidence 122233333333322110 00001122223321100
Q ss_pred CceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhcccccHHHHHH
Q 003316 243 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 322 (831)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 322 (831)
+ .+-| + + .+..|++
T Consensus 465 ---------g------------~~~w--~---------------e----------------------------GI~eLle 478 (1289)
T 3avx_A 465 ---------G------------DAEW--E---------------A----------------------------KILELAG 478 (1289)
T ss_dssp ---------C------------CHHH--H---------------H----------------------------HHHHHHH
T ss_pred ---------C------------Cccc--c---------------c----------------------------cchhhHh
Confidence 0 0000 0 0 1246888
Q ss_pred HHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCC
Q 003316 323 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 402 (831)
Q Consensus 323 ~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~ 402 (831)
++.+++|.|.. +.++|+.+.|..++..++.|. ++++||++|+|++||.|.+++.
T Consensus 479 aL~~~Ip~P~r-------------------------~~d~Pfr~pId~Vf~i~G~Gt-VvtGrV~sGtLkvGD~V~I~ps 532 (1289)
T 3avx_A 479 FLDSYIPEPER-------------------------AIDKPFLLPIEDVFSISGRGT-VVTGRVERGIIKVGEEVEIVGI 532 (1289)
T ss_dssp HHHHTSCCCCC-------------------------GGGSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEESS
T ss_pred HHhhhcCCCcc-------------------------ccccceeeeccccccccCCcE-EEEEEEeccEEecCCEEEEecC
Confidence 89999998831 134788887777777777776 8999999999999999998753
Q ss_pred CCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eeecCC
Q 003316 403 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 459 (831)
Q Consensus 403 n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl~~~~ 459 (831)
+ .. ...+|..|.. + ..++++|.|||+|++. |++....+.| +|+++.
T Consensus 533 ~----~~---~~~kVksI~~-~---~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 533 K----ET---QKSTCTGVEM-F---RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp S----SC---EEEEEEEEEC-S---SCEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred C----Cc---eeEEEEEEee-c---CceeeEEecCCcceeEeeecchhcCCcccEEecCC
Confidence 2 10 1268888854 2 3578999999998875 6644334678 888654
No 23
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.91 E-value=6.5e-24 Score=241.31 Aligned_cols=132 Identities=26% Similarity=0.346 Sum_probs=94.0
Q ss_pred HHHHhhccc--CCeeEEEEEeCCCCCHHHHHHHHHHHcCCccccc----------CCce-------EEecCchhhheece
Q 003316 8 ELRRIMDFK--HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGDV-------RMTDTRQDEAERGI 68 (831)
Q Consensus 8 ~~~~~~~~~--~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~g~~-------~~~D~~~~e~~rgi 68 (831)
.+.+++... +..+||+++||+|||||||+++|++..+.+.... .|++ +.+|..++|++||+
T Consensus 11 ~i~~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGi 90 (434)
T 1zun_B 11 DILAYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGI 90 (434)
T ss_dssp -----CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----C
T ss_pred hHHHHHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCc
Confidence 455555532 4468999999999999999999999987664321 1211 24788999999999
Q ss_pred eeeeceeEEEEeechhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh
Q 003316 69 TIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG 136 (831)
Q Consensus 69 Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~ 136 (831)
|++.+...+.+. ++.++|||||||.+|..++.++++.+|++|+|||+.+ +..
T Consensus 91 Ti~~~~~~~~~~----------------~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~ 154 (434)
T 1zun_B 91 TIDVAYRYFSTA----------------KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL 154 (434)
T ss_dssp CCCCEEEEEECS----------------SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH
T ss_pred EEEeeeeEeecC----------------CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH
Confidence 999877766654 7899999999999999999999999999999999986 112
Q ss_pred hCCCc-EEEEecCcchhhccCCCH
Q 003316 137 ERIRP-VLTVNKMDRCFLELQVDG 159 (831)
Q Consensus 137 ~~~~~-ii~iNKiD~~~~~~~~~~ 159 (831)
.+.++ ++++||+|+. +.+.
T Consensus 155 ~~~~~iIvviNK~Dl~----~~~~ 174 (434)
T 1zun_B 155 LGIKHIVVAINKMDLN----GFDE 174 (434)
T ss_dssp TTCCEEEEEEECTTTT----TSCH
T ss_pred cCCCeEEEEEEcCcCC----cccH
Confidence 34555 5599999998 6653
No 24
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.91 E-value=3.5e-24 Score=244.81 Aligned_cols=289 Identities=24% Similarity=0.375 Sum_probs=186.2
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc----------cCCc-----eEEecCchhhheeceeeeeceeEE
Q 003316 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISL 77 (831)
Q Consensus 13 ~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~e~~rgiTi~~~~~~~ 77 (831)
|.......||+++||+|||||||+++|++..+.+... ..|. .+++|..++|+++|+|+......+
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~ 80 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence 3344557899999999999999999999987766431 1222 135788999999999999998877
Q ss_pred EEeechhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------------HhhhC
Q 003316 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------------ALGER 138 (831)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------------~~~~~ 138 (831)
.+. ++.++|||||||.+|...+.++++.+|++|+|||+.+ +...+
T Consensus 81 ~~~----------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~ 144 (458)
T 1f60_A 81 ETP----------------KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLG 144 (458)
T ss_dssp ECS----------------SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTT
T ss_pred ecC----------------CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcC
Confidence 664 7899999999999999999999999999999999974 11124
Q ss_pred CCc-EEEEecCcchhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHh
Q 003316 139 IRP-VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 217 (831)
Q Consensus 139 ~~~-ii~iNKiD~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 217 (831)
.++ ++|+||+|+. +++.+. +.++.+++...+..+. +.+...++...|+..|++..
T Consensus 145 v~~iivviNK~Dl~----~~~~~~----~~~i~~~~~~~l~~~g--------~~~~~~~~i~vSA~~g~nv~-------- 200 (458)
T 1f60_A 145 VRQLIVAVNKMDSV----KWDESR----FQEIVKETSNFIKKVG--------YNPKTVPFVPISGWNGDNMI-------- 200 (458)
T ss_dssp CCEEEEEEECGGGG----TTCHHH----HHHHHHHHHHHHHHHT--------CCGGGCCEEECCTTTCBTTT--------
T ss_pred CCeEEEEEEccccc----cCCHHH----HHHHHHHHHHHHHHcC--------CCccCceEEEeecccCcCcc--------
Confidence 554 5599999998 655332 3333334443333211 01111123344555443221
Q ss_pred hhhcCCChHHHHH-HhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHH
Q 003316 218 ASKFGVDESKMME-RLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSE 296 (831)
Q Consensus 218 ~~~~~i~~~~l~~-~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~ 296 (831)
++.. .-| |. .|...-..+ .++
T Consensus 201 ---------~~~~~~~~----~~----~~~~~~~tg---------------------------------------~~~-- 222 (458)
T 1f60_A 201 ---------EATTNAPW----YK----GWEKETKAG---------------------------------------VVK-- 222 (458)
T ss_dssp ---------BCCSSCTT----CC----CEEEECSSS---------------------------------------EEE--
T ss_pred ---------cccccCch----hh----ccccccccc---------------------------------------ccc--
Confidence 0000 001 11 011100000 000
Q ss_pred HHHHhHHHHHHHHHhcccccHHHHHHHHHhcCCCchhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCCC
Q 003316 297 EKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASD 376 (831)
Q Consensus 297 el~~~~~~l~~~i~~~~~P~~~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~ 376 (831)
...|++++.. +|.|. .+.+.|+.+.|..++..++
T Consensus 223 --------------------~~~Ll~~l~~-~~~p~-------------------------~~~~~p~r~~i~~v~~~~g 256 (458)
T 1f60_A 223 --------------------GKTLLEAIDA-IEQPS-------------------------RPTDKPLRLPLQDVYKIGG 256 (458)
T ss_dssp --------------------ESSHHHHHHT-SCCCC-------------------------CCTTSCCEEEEEEEEEETT
T ss_pred --------------------hHHHHHHhhc-cCCCc-------------------------ccCCCCcEEEEEEEEEeCC
Confidence 0134555443 45452 1235788888888877777
Q ss_pred CCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-
Q 003316 377 KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA- 453 (831)
Q Consensus 377 ~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~~tg- 453 (831)
.|. +..+||.+|+++.||.|.++..+ . ..+|.+|... ..++++|.|||++++. |++....+.|
T Consensus 257 ~G~-v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~~----~~~~~~a~aG~~v~i~l~gi~~~~i~rG~ 322 (458)
T 1f60_A 257 IGT-VPVGRVETGVIKPGMVVTFAPAG----V-----TTEVKSVEMH----HEQLEQGVPGDNVGFNVKNVSVKEIRRGN 322 (458)
T ss_dssp TEE-EEEEECCBSCBCTTCEEEEETTT----E-----EEEEEEEEET----TEECSCBCTTCEEEEEESSCCTTTSCTTC
T ss_pred CcE-EEEEEEeCCeEcCCCEEEECCCC----c-----eEEEeEEEEC----CeEEEEEcCCCEEEEEEcCCcccccCcee
Confidence 776 99999999999999999987532 1 2688888642 3578999999998874 6643333667
Q ss_pred eeecCC
Q 003316 454 TLTNEK 459 (831)
Q Consensus 454 Tl~~~~ 459 (831)
+|+++.
T Consensus 323 vl~~~~ 328 (458)
T 1f60_A 323 VCGDAK 328 (458)
T ss_dssp EEEETT
T ss_pred EEecCC
Confidence 787754
No 25
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.91 E-value=1.1e-23 Score=233.60 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=77.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.+||+++||+|+|||||+++|+ +||+|+..+...+.|. ++
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~----------------~~ 60 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKE----------------GR 60 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSS----------------SS
T ss_pred CCEEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecC----------------Ce
Confidence 4599999999999999999993 6789998887776664 67
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCc-EEEEe-cCcc
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRP-VLTVN-KMDR 150 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~-ii~iN-KiD~ 150 (831)
.++|||||||.+|..++.++++.+|+||+||| .+ +...+.|. ++++| |||+
T Consensus 61 ~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 61 NMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp EEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred EEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 89999999999999999999999999999999 64 12234566 67999 9996
No 26
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.8e-24 Score=251.76 Aligned_cols=289 Identities=21% Similarity=0.315 Sum_probs=186.0
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccc----------cCCc-----eEEecCchhhheeceeeeeceeEE
Q 003316 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISL 77 (831)
Q Consensus 13 ~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~e~~rgiTi~~~~~~~ 77 (831)
+.......||+++||+|+|||||+++|++..+.+... ..|. .+++|....|+++|+|+......+
T Consensus 161 l~~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~ 240 (611)
T 3izq_1 161 VKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF 240 (611)
T ss_dssp CCCCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE
T ss_pred HhccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE
Confidence 3334556799999999999999999999888877542 1221 346888999999999999998888
Q ss_pred EEeechhhhhccccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------------HhhhC
Q 003316 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------------ALGER 138 (831)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------------~~~~~ 138 (831)
.+. ++.++|||||||.+|...+..+++.+|++|+|||+.. +...+
T Consensus 241 ~~~----------------~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg 304 (611)
T 3izq_1 241 STH----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG 304 (611)
T ss_dssp ECS----------------SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT
T ss_pred ecC----------------CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC
Confidence 774 7899999999999999999999999999999999964 11224
Q ss_pred CCc-EEEEecCcchhhccCCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecCceeeeccCcceeEEeehhHHHHh
Q 003316 139 IRP-VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 217 (831)
Q Consensus 139 ~~~-ii~iNKiD~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 217 (831)
.++ |+|+||+|+. +.+.. .+.++.+++...+..+.. .+...++...|+..|.+.
T Consensus 305 i~~iIVVvNKiDl~----~~~~~----~~~ei~~~l~~~l~~~g~--------~~~~~~~i~vSA~tG~gI--------- 359 (611)
T 3izq_1 305 IHNLIIAMNKMDNV----DWSQQ----RFEEIKSKLLPYLVDIGF--------FEDNINWVPISGFSGEGV--------- 359 (611)
T ss_dssp CCEEEEEEECTTTT----TTCHH----HHHHHHHHHHHHHHHHTC--------CGGGCEEEECCTTTCTTT---------
T ss_pred CCeEEEEEeccccc----chhHH----HHHHHHHHHHHHHHhhcc--------cccCccEEeeecccCCCc---------
Confidence 454 5599999998 65422 233333333333322110 111112333454433211
Q ss_pred hhhcCCChHHHHHHhhcccccCcCCCceeecCCCCCccchhhhHhhhchHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHH
Q 003316 218 ASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 297 (831)
Q Consensus 218 ~~~~~i~~~~l~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~d~~~l~~~l~~~~~~l~~~e 297 (831)
+ .+... .....|...
T Consensus 360 ------~--el~~~--------~~~~~Wy~g------------------------------------------------- 374 (611)
T 3izq_1 360 ------Y--KIEYT--------DEVRQWYNG------------------------------------------------- 374 (611)
T ss_dssp ------S--SCTTS--------CTTCCSCCS-------------------------------------------------
T ss_pred ------c--ccCcc--------ccccccccC-------------------------------------------------
Confidence 0 00000 000011110
Q ss_pred HHHhHHHHHHHHHhcccccHHHHHHHHHhcCCC--chhhhhhhhccccCCCCCccccccccccCCCCCeEEEEEEeecCC
Q 003316 298 KELMGKALMKRVMQTWLPASSALLEMMIFHLPS--PATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPAS 375 (831)
Q Consensus 298 l~~~~~~l~~~i~~~~~P~~~~LLd~I~~~lPs--P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~ 375 (831)
|....+|+.+...+|. |. .+.+.|+.+.|..++..+
T Consensus 375 -----------------~~L~~~L~~l~~~~p~~~p~-------------------------~~~~~p~r~~V~~v~~~~ 412 (611)
T 3izq_1 375 -----------------PNLMSTLENAAFKISKENEG-------------------------INKDDPFLFSVLEIIPSK 412 (611)
T ss_dssp -----------------CCHHHHHTTSCCCCCCSSSC-------------------------CSCCSCCEEECCEEECCS
T ss_pred -----------------CcHHHHHHHHhhcccccCcc-------------------------cccccchhhheeeeeccC
Confidence 0012234433333443 20 124578888877776644
Q ss_pred ---CCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEe----cCceeeeccccCCCEEEE--eccc
Q 003316 376 ---DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVAM--VGLD 446 (831)
Q Consensus 376 ---~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~----g~~~~~v~~a~AGdIvai--~gl~ 446 (831)
..|. +..+||.+|+|++||.|.++..+ . ..+|..|.... |....++++|.|||+|++ .|++
T Consensus 413 ~~~g~g~-v~~G~V~~G~lk~Gd~v~~~p~~----~-----~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~ 482 (611)
T 3izq_1 413 KTSNDLA-LVSGKLESGSIQPGESLTIYPSE----Q-----SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAY 482 (611)
T ss_dssp SSCSSSS-EEEEEEEESEECTTCEEEETTTT----E-----EEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCC
T ss_pred ccCCCee-EEEEEEEeceeccCCEEEEecCC----c-----eEEEEEEEEcccccccccccccceecCCCcceEEeeecc
Confidence 2454 89999999999999999986432 2 26888887653 556789999999999998 3442
Q ss_pred cccccce-eeecCC
Q 003316 447 QYITKNA-TLTNEK 459 (831)
Q Consensus 447 ~~~~~tg-Tl~~~~ 459 (831)
....+.| +|+++.
T Consensus 483 ~~di~rGdvl~~~~ 496 (611)
T 3izq_1 483 PEDIQNGDLAASVD 496 (611)
T ss_dssp TTSCCTTCEEBCST
T ss_pred HhhCcceEEccCCC
Confidence 2223677 887754
No 27
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.91 E-value=2.4e-23 Score=235.11 Aligned_cols=121 Identities=32% Similarity=0.452 Sum_probs=88.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccc--cC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE--RQ 94 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~--~~ 94 (831)
+..+||+++||+|||||||+++|+ | ..+|...+|+++|||+..+...+.+...+..- .+... ..
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~-----------g--~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~-~y~~~~~~~ 73 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALT-----------G--VWTDTHSEELRRGITIKIGFADAEIRRCPNCG-RYSTSPVCP 73 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH-----------T--CCCC--CGGGGSCSSSCCEEEEEEEEECTTTC-CEESSSBCT
T ss_pred CCccEEEEECCCCCCHHHHHHHHh-----------C--CccccChhhhcCCcEEEEeeeeeecccccccc-ccccccccc
Confidence 557899999999999999999994 2 13566788999999999887776663210000 00000 00
Q ss_pred --CC----CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh-hhCCCcE-EEEecCcch
Q 003316 95 --GN----EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL-GERIRPV-LTVNKMDRC 151 (831)
Q Consensus 95 --~~----~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~-~~~~~~i-i~iNKiD~~ 151 (831)
+. ...++|||||||.+|..++.+++..+|++|+|||+.+ .+ ..+.+++ +|+||+|+.
T Consensus 74 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 74 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp TTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred ccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 11 2789999999999999999999999999999999983 12 2345555 589999987
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=6.7e-22 Score=223.00 Aligned_cols=121 Identities=29% Similarity=0.439 Sum_probs=81.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccc--cC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE--RQ 94 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~--~~ 94 (831)
+...||+++||+|||||||+++|+ | ..+|...+|+++|||+..+...+.+...+.. ..+... ..
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~-----------g--~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~-~~y~~~~~~~ 71 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALT-----------G--VWTDRHSEELRRGISIRLGYADCEIRKCPQC-GTYTTKPRCP 71 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHH-----------S--CCCCC-------CCCCCCEEEEEEEEECTTT-CCEESSSBCT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHh-----------C--CccccCcccccCCcEEEeccccccccccccc-cccccccccc
Confidence 457899999999999999999993 2 1356678899999999887666554210000 000000 00
Q ss_pred --CC----CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-hCCCc-EEEEecCcch
Q 003316 95 --GN----EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-ERIRP-VLTVNKMDRC 151 (831)
Q Consensus 95 --~~----~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-~~~~~-ii~iNKiD~~ 151 (831)
+. .+.++|||||||.+|..++.++++.+|++|+|||+.+ .+. .+.+| ++++||+|+.
T Consensus 72 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 72 NCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp TSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred ccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 11 2789999999999999999999999999999999983 222 24445 5699999997
No 29
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.87 E-value=7.2e-24 Score=242.09 Aligned_cols=103 Identities=28% Similarity=0.422 Sum_probs=81.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+.++|+++||+|||||||+++|+...- . ....+|+|++.....+.|.
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v--~--------------~~e~~GIT~~i~~~~v~~~---------------- 49 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKV--A--------------SGEAGGITQHIGAYHVETE---------------- 49 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHH--S--------------BTTBCCCCCCSSCCCCCTT----------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCC--c--------------cccCCCeeEeEEEEEEEEC----------------
Confidence 3568999999999999999999975421 0 1123688888776655543
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~ 151 (831)
++.++|||||||.+|...+.++++.+|++|||||+.+ +...+.|.++++||+|++
T Consensus 50 ~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKP 116 (501)
T ss_dssp SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEecccc
Confidence 5689999999999999999999999999999999986 122355666799999998
No 30
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.86 E-value=7.6e-21 Score=214.04 Aligned_cols=121 Identities=24% Similarity=0.302 Sum_probs=79.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCc--eEEecCchhhheeceeeeeceeEEEEeechhhhhccccccC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~--~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (831)
+...||+++||+|||||||+++|+...... ..|. .+.......+..++++.......+.+. ...
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 71 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK---KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSD-----------DEP 71 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCS---SSEEEEEEEEECTTSCTTTTEESSSCCGGGTCC-----------SCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc---ccCccccceeeccccccccceeccccccccccc-----------ccc
Confidence 445799999999999999999996432111 1121 111112233334555544332111111 001
Q ss_pred CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh-hhCCCc-EEEEecCcch
Q 003316 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL-GERIRP-VLTVNKMDRC 151 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~-~~~~~~-ii~iNKiD~~ 151 (831)
.....++|+|||||.+|...+.++++.+|++|+|||+.+ .+ ..+.+| ++++||+|+.
T Consensus 72 ~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 72 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp EEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred cccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 123789999999999999999999999999999999986 11 224445 5599999987
No 31
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=2.9e-22 Score=230.10 Aligned_cols=109 Identities=35% Similarity=0.494 Sum_probs=76.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..||+++||+|||||||+++|+... ....+|..++|+++|+|+......+.+. +
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~---------~~~~~d~~~~e~~~GiTi~~~~~~~~~~----------------~ 72 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIA---------STSAHDKLPESQKRGITIDIGFSAFKLE----------------N 72 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEET----------------T
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCC---------cccccccccccccCccEEecceEEEEEC----------------C
Confidence 45799999999999999999995322 1246788899999999999988888774 6
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~ 151 (831)
+.++|||||||.+|..++.++++.+|++|+|||+.+ +...+.|.++++||+|+.
T Consensus 73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNA 138 (482)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSS
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 899999999999999999999999999999999975 222356777899999987
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.84 E-value=3.1e-22 Score=230.44 Aligned_cols=103 Identities=29% Similarity=0.416 Sum_probs=79.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+...|+++||+|||||||+++|....-. .+...|+|.+.....+.+. ++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~----------------~~~~~giT~~i~~~~v~~~---------------~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA----------------AMEAGGITQHIGAFLVSLP---------------SG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH----------------HSSSCCBCCCTTSCCBCSS---------------CS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc----------------cccCCceeEEEeEEEEEeC---------------CC
Confidence 3457999999999999999999654311 1123467776665544442 35
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~ 151 (831)
..++|||||||.+|...+.++++.+|++|||+|+.+ +...+.|.++++||+|++
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~ 117 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKA 117 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGT
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 689999999999999999999999999999999987 222345666799999998
No 33
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.42 E-value=4.3e-13 Score=144.52 Aligned_cols=105 Identities=26% Similarity=0.251 Sum_probs=75.5
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
..+..+|+|+|++|+|||||+++|+.....+.....++ |.......+.+
T Consensus 4 ~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~t---------------Tr~~i~~i~~~---------------- 52 (301)
T 1wf3_A 4 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQT---------------TRKRLRGILTE---------------- 52 (301)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCC---------------CCSCEEEEEEE----------------
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCc---------------eeEEEEEEEEe----------------
Confidence 34567899999999999999999986654433222221 11111111223
Q ss_pred CCeeEEEEeCCCCcc--------hHHHHHHHhhhcCeEEEEEecHH-----------Hhhh---CCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIE-----------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~d--------f~~ev~~al~~~D~avlVvda~~-----------~~~~---~~~~ii~iNKiD~~ 151 (831)
++.+++|+||||+.+ |...+..+++.+|++++|+|+.. .+.+ +.|.++|+||+|+.
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 378999999999987 77888899999999999999975 2333 34556699999987
No 34
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.42 E-value=8.6e-13 Score=139.02 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=74.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+|+|+.|+|||||+++|++....+..... +++|.......+.|.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~--------------~~~t~~~~~~~~~~~---------------- 69 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGS--------------QTLTKTCSKSQGSWG---------------- 69 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTS--------------CCCCCSCEEEEEEET----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCC--------------CceeeeeEEEEEEeC----------------
Confidence 45689999999999999999999876554433111 123444444455564
Q ss_pred CeeEEEEeCCCCcchH-----------HHHHHHhhhcCeEEEEEecHH----------Hhhh------CCCcEEEEe-cC
Q 003316 97 EYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIE----------ALGE------RIRPVLTVN-KM 148 (831)
Q Consensus 97 ~~~inliDTPGh~df~-----------~ev~~al~~~D~avlVvda~~----------~~~~------~~~~ii~iN-Ki 148 (831)
++.++||||||+.++. ..+..+++.+|++|+|+|+.. .+.+ ..|+++++| |+
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~ 149 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKE 149 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGG
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEccc
Confidence 7899999999998873 223346788999999999864 1222 356677887 99
Q ss_pred cch
Q 003316 149 DRC 151 (831)
Q Consensus 149 D~~ 151 (831)
|+.
T Consensus 150 Dl~ 152 (260)
T 2xtp_A 150 DLN 152 (260)
T ss_dssp GGT
T ss_pred ccC
Confidence 998
No 35
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.35 E-value=3e-12 Score=134.00 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=77.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
.-.+|+++|+.|+|||||+++|+.....+... . ..|.|.......+.+. +
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~--~------------~~~~T~~~~~~~~~~~----------------~ 69 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRL--G------------ATSVTRACTTGSRRWD----------------K 69 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEET----------------T
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccC--C------------CCCccccEEEEEEEEC----------------C
Confidence 45789999999999999999997665443321 0 1123444334444453 7
Q ss_pred eeEEEEeCCCC--------cchHHHHHHHh----hhcCeEEEEEecHH----------Hhhh-------CCCcEEEEecC
Q 003316 98 YLINLIDSPGH--------VDFSSEVTAAL----RITDGALVVVDCIE----------ALGE-------RIRPVLTVNKM 148 (831)
Q Consensus 98 ~~inliDTPGh--------~df~~ev~~al----~~~D~avlVvda~~----------~~~~-------~~~~ii~iNKi 148 (831)
..++||||||. .+|..++.+++ +.+|++|+|+|+.. .+.+ +.|.++|+||+
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~ 149 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKE 149 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGG
T ss_pred cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchH
Confidence 89999999998 66777887777 89999999999874 2222 34456699999
Q ss_pred cchhhccCCCHHHHH
Q 003316 149 DRCFLELQVDGEEAY 163 (831)
Q Consensus 149 D~~~~~~~~~~~~~~ 163 (831)
|+. +.+.++..
T Consensus 150 Dl~----~~~~~~~l 160 (247)
T 3lxw_A 150 DLA----GGSLHDYV 160 (247)
T ss_dssp GGT----TCCHHHHH
T ss_pred hcC----CCCHHHHH
Confidence 998 76655544
No 36
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.31 E-value=9.7e-13 Score=129.30 Aligned_cols=108 Identities=24% Similarity=0.425 Sum_probs=76.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+...-. . ....++|.......+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~---------------- 53 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT--E--------------QEAGGITQHIGAYQVTVN---------------- 53 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS--C--------------SSCCSSSTTCCCCEEEET----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc--c--------------CCCCceeEeeeEEEEEeC----------------
Confidence 45689999999999999999999643211 1 001123333333334443
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hh-hhCCCcEEEEecCcchhhccCCCHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------AL-GERIRPVLTVNKMDRCFLELQVDGE 160 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~-~~~~~~ii~iNKiD~~~~~~~~~~~ 160 (831)
+..++|+||||+.+|.......++.+|++|+|+|+.. .+ ..+.|.++|+||+|+. ..+.+
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~----~~~~~ 125 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKP----EANPD 125 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSS----CSCHH
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCC----cCCHH
Confidence 6789999999999998777777889999999999865 12 2345556699999998 65533
No 37
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.30 E-value=1.3e-12 Score=140.85 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=69.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+|+||+|+|||||+++|++....+.....+ .|.......+.+ ++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~---------------tTr~~~~gi~~~----------------~~ 55 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQ---------------TTRHRIVGIHTE----------------GA 55 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSS---------------CCSSCEEEEEEE----------------TT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCC---------------cceeeEEEEEEE----------------CC
Confidence 45689999999999999999997653222111111 111111111233 36
Q ss_pred eeEEEEeCCCCc---------chHHHHHHHhhhcCeEEEEEecHH----------Hhhh-CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHV---------DFSSEVTAALRITDGALVVVDCIE----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~---------df~~ev~~al~~~D~avlVvda~~----------~~~~-~~~~ii~iNKiD~~ 151 (831)
..++++||||+. +|...+..+++.+|++++|+|+.. .+.. +.|.++|+||+|+.
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNV 129 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTC
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccC
Confidence 799999999998 333445677889999999999864 2332 45556799999987
No 38
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.30 E-value=4e-12 Score=144.27 Aligned_cols=103 Identities=23% Similarity=0.323 Sum_probs=70.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|++|+|||||+++|+.....+.. ...|+|.......+.+. +
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~---------------~~~gtT~d~~~~~~~~~----------------~ 222 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS---------------NVAGTTRDAVDTSFTYN----------------Q 222 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------------------------CCEEEEET----------------T
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeec---------------CCCCceeeeeEEEEEEC----------------C
Confidence 5689999999999999999999754332221 12456766666666664 6
Q ss_pred eeEEEEeCCCCc----------chHHH-HHHHhhhcCeEEEEEecHH------------HhhhCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHV----------DFSSE-VTAALRITDGALVVVDCIE------------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~----------df~~e-v~~al~~~D~avlVvda~~------------~~~~~~~~ii~iNKiD~~ 151 (831)
..++||||||+. .|... ...+++.+|++|+|+|+.+ +...+.+.++|+||+|+.
T Consensus 223 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 299 (436)
T 2hjg_A 223 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 299 (436)
T ss_dssp EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 689999999984 34322 3468889999999999987 122345556699999987
No 39
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.29 E-value=2.8e-12 Score=126.07 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=73.7
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccc
Q 003316 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (831)
Q Consensus 13 ~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (831)
........+|+++|+.|+|||||+++|+...-. .+...+++.......+.+.
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~------------ 54 (181)
T 3tw8_B 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEIN------------ 54 (181)
T ss_dssp ---CCEEEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEET------------
T ss_pred ccccCcceEEEEECCCCCCHHHHHHHHhcCCCC----------------CccCCCceeEEEEEEEEEC------------
Confidence 344566789999999999999999999422110 1111223333333333332
Q ss_pred cCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh---CCCcEEEEecCcch
Q 003316 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 93 ~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~---~~~~ii~iNKiD~~ 151 (831)
+..+.++++||||+.+|.......++.+|++|+|+|+.+ .+.. ..|.++|+||+|+.
T Consensus 55 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 55 --GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp --TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred --CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 224789999999999998888888999999999999976 1111 23446699999986
No 40
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.27 E-value=9.7e-12 Score=131.29 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=69.4
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccC
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (831)
...+..+|+++|++|+|||||+++|+......... ..+.|+......+.+.
T Consensus 32 ~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~-------------- 82 (262)
T 3def_A 32 KDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP---------------FQAEGLRPVMVSRTMG-------------- 82 (262)
T ss_dssp TTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS---------------SCC-CCCCEEEEEEET--------------
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCC---------------CCCcceeeEEEEEEEC--------------
Confidence 33467899999999999999999997654322111 1233444444455553
Q ss_pred CCCeeEEEEeCCCCcchHHHH---HHHhh------hcCeEEEEEecHH------------Hhhh--C----CCcEEEEec
Q 003316 95 GNEYLINLIDSPGHVDFSSEV---TAALR------ITDGALVVVDCIE------------ALGE--R----IRPVLTVNK 147 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev---~~al~------~~D~avlVvda~~------------~~~~--~----~~~ii~iNK 147 (831)
+..++|||||||.+|.... .+.++ .+|++++|+|... .+.+ + .+.++++||
T Consensus 83 --~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK 160 (262)
T 3def_A 83 --GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTH 160 (262)
T ss_dssp --TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred --CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeC
Confidence 6799999999999874332 22222 7899999966542 1221 1 144669999
Q ss_pred Ccch
Q 003316 148 MDRC 151 (831)
Q Consensus 148 iD~~ 151 (831)
+|+.
T Consensus 161 ~Dl~ 164 (262)
T 3def_A 161 AQFS 164 (262)
T ss_dssp TTCC
T ss_pred cccC
Confidence 9984
No 41
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.27 E-value=1.2e-11 Score=119.08 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=69.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
+++|+++|+.|+|||||+++|+........ ...++|.......+.+. +.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~----------------~~ 49 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVA---------------DVPGVTRDLKEGVVETD----------------RG 49 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEET----------------TE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeecc---------------CCCCceecceEEEEEeC----------------Cc
Confidence 478999999999999999999754321111 11123333333333332 56
Q ss_pred eEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~ 151 (831)
.+.|+||||+.+ +.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence 899999999987 45566778899999999999986 222 245556699999987
No 42
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.27 E-value=7e-12 Score=131.89 Aligned_cols=101 Identities=25% Similarity=0.338 Sum_probs=70.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
+++|+++|+.|+|||||+++|....- .+.+ ..|+|+......+.+. +.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~----------~v~~------~pg~Tv~~~~~~~~~~----------------~~ 48 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ----------RVGN------WPGVTVEKKTGEFLLG----------------EH 48 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE----------EEEE------CTTSSSEEEEEEEEET----------------TE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC----------CccC------CCCceEEEEEEEEEEC----------------Ce
Confidence 36899999999999999999943320 1111 1256666555666654 67
Q ss_pred eEEEEeCCCCcchHHH---------H-HHHh--hhcCeEEEEEecHH---------Hhhh-CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSE---------V-TAAL--RITDGALVVVDCIE---------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~e---------v-~~al--~~~D~avlVvda~~---------~~~~-~~~~ii~iNKiD~~ 151 (831)
.++|+||||+.+|... + ...+ +.+|++|+|+|+.. .+.+ +.|.++|+||+|+.
T Consensus 49 ~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 49 LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 9999999999887641 2 2233 68999999999997 2333 34556699999986
No 43
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.27 E-value=5e-12 Score=126.32 Aligned_cols=112 Identities=18% Similarity=0.203 Sum_probs=76.1
Q ss_pred HHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcc
Q 003316 10 RRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY 89 (831)
Q Consensus 10 ~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~ 89 (831)
..+........+|+++|+.|+|||||+++|+...-... ...+++.......+.+.
T Consensus 7 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------- 61 (196)
T 3tkl_A 7 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTES----------------YISTIGVDFKIRTIELD--------- 61 (196)
T ss_dssp ----CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSC----------------CCCCSSEEEEEEEEEET---------
T ss_pred hhcCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCC----------------CCCcccceEEEEEEEEC---------
Confidence 33444445678999999999999999999975322111 11122222223333332
Q ss_pred ccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 90 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 90 ~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+..+.+.|+||||+.+|.......++.+|++|+|+|+.+ .+. .+.|.++|+||+|+.
T Consensus 62 -----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 62 -----GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp -----TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred -----CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 234689999999999999888999999999999999886 111 134456699999986
No 44
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.27 E-value=3.1e-11 Score=122.70 Aligned_cols=122 Identities=19% Similarity=0.199 Sum_probs=77.6
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccC
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (831)
...+..+|+++|+.|+|||||+++|+...- ... ..|+......+.+. .
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~-----------------~~~~~~~~~~~~~~-------------~ 50 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQY--RDT-----------------QTSITDSSAIYKVN-------------N 50 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCC--CCB-----------------CCCCSCEEEEEECS-------------S
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCc--ccc-----------------cCCcceeeEEEEec-------------C
Confidence 345567999999999999999999976431 110 01111111223332 1
Q ss_pred CCCeeEEEEeCCCCcchHH-HHHHHhhhcCeEEEEEecHH----------Hhh---------h-CCCcEEEEecCcchhh
Q 003316 95 GNEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIE----------ALG---------E-RIRPVLTVNKMDRCFL 153 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~-ev~~al~~~D~avlVvda~~----------~~~---------~-~~~~ii~iNKiD~~~~ 153 (831)
.....++|+||||+.+|.. .....++.+|++|+|+|+.. .+. . ..|.++|+||+|+.
T Consensus 51 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-- 128 (214)
T 2fh5_B 51 NRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA-- 128 (214)
T ss_dssp TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST--
T ss_pred CCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC--
Confidence 1257899999999999987 45566899999999999865 111 1 23445699999987
Q ss_pred ccCC-CHHHHHHHHHHHHHH
Q 003316 154 ELQV-DGEEAYQTFQKVIEN 172 (831)
Q Consensus 154 ~~~~-~~~~~~~~l~~~~~~ 172 (831)
.. ..++..+.+.+.+..
T Consensus 129 --~~~~~~~~~~~l~~~l~~ 146 (214)
T 2fh5_B 129 --MAKSAKLIQQQLEKELNT 146 (214)
T ss_dssp --TCCCHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHH
Confidence 54 455555566655543
No 45
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.27 E-value=1.8e-12 Score=145.53 Aligned_cols=105 Identities=24% Similarity=0.246 Sum_probs=73.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
...++|+|+|+.|+|||||+++|+.... ...+..+|+|+......+.+. +
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~---------------~~~~~~~gtT~d~~~~~~~~~---------------~ 81 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNV---------------SIVSDYAGTTTDPVYKSMELH---------------P 81 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEET---------------T
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCC---------------CccCCCCCeeeeeEEEEEEEC---------------C
Confidence 4578999999999999999999943221 122345677888777777774 2
Q ss_pred CeeEEEEeCCCCcchH-------HHHHHHhhhcCeEEEEEecHH---------Hhhh-CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFS-------SEVTAALRITDGALVVVDCIE---------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~-------~ev~~al~~~D~avlVvda~~---------~~~~-~~~~ii~iNKiD~~ 151 (831)
...++|||||||.+|. ..+...++.+|++|+|+|+.. .+.+ +.|.++|+||+|+.
T Consensus 82 ~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 82 IGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp TEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred CCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 3489999999999884 235677888999999999832 2333 44556699999998
No 46
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.26 E-value=2.2e-11 Score=131.71 Aligned_cols=105 Identities=23% Similarity=0.280 Sum_probs=73.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
...-.|+|+|++|+|||||+++|+...-.+.....+ .|.......+.+. .
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~---------------tT~~~~~~~~~~~---------------~ 57 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAG---------------TTRMRVLGVKNIP---------------N 57 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC---------------CCCSCEEEEEEET---------------T
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCC---------------ceeeEEEEEEecC---------------C
Confidence 445689999999999999999997654333222222 2322222222221 2
Q ss_pred CeeEEEEeCCCCcchH----------HHHHHHhhhcCeEEEEEecHH--------H----hhh-CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFS----------SEVTAALRITDGALVVVDCIE--------A----LGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~----------~ev~~al~~~D~avlVvda~~--------~----~~~-~~~~ii~iNKiD~~ 151 (831)
++.++|+||||+.++. ..+..+++.+|++|+|+|+.. . +.. +.|.++|+||+|+.
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 7899999999996644 677889999999999999986 1 222 34556699999986
No 47
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.25 E-value=6e-12 Score=133.58 Aligned_cols=102 Identities=19% Similarity=0.290 Sum_probs=71.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
++++|+++|+.|+|||||+++|..... . .| ...|+|+......+.|. +
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~---~--~~-----------~~~~~t~~~~~~~~~~~----------------~ 49 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ---H--VG-----------NWPGVTVEKKEGIMEYR----------------E 49 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE---E--EE-----------ECTTSSCEEEEEEEEET----------------T
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc---c--cC-----------CCCCeEEEeeEEEEEEC----------------C
Confidence 357999999999999999999943211 1 11 12356666666666664 6
Q ss_pred eeEEEEeCCCCcchHHH------HHHHh--hhcCeEEEEEecHH----------HhhhC-CCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSE------VTAAL--RITDGALVVVDCIE----------ALGER-IRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~e------v~~al--~~~D~avlVvda~~----------~~~~~-~~~ii~iNKiD~~ 151 (831)
..++|+||||+.+|... ....+ ..+|++++|+|+.. ....+ .|.++|+||+|+.
T Consensus 50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 50 KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 78999999999987542 22222 46999999999987 22234 4546699999975
No 48
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.25 E-value=1.2e-11 Score=122.39 Aligned_cols=107 Identities=21% Similarity=0.183 Sum_probs=74.0
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccC
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (831)
......+|+++|+.|+|||||+++|+........ ...++.......+.+.
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~-------------- 55 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS----------------NHTIGVEFGSKIINVG-------------- 55 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC----------------CCCSEEEEEEEEEEET--------------
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCccceEEEEEEEEEC--------------
Confidence 3355789999999999999999999754321111 0111222222222222
Q ss_pred CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------H---hh----hCCCcEEEEecCcch
Q 003316 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------A---LG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~---~~----~~~~~ii~iNKiD~~ 151 (831)
+....+.|+||||+.+|.......++.+|++|+|+|+.. . +. .+.|.++|+||+|+.
T Consensus 56 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 56 GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp TEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 224689999999999999988889999999999999886 1 11 233445699999986
No 49
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.25 E-value=1.6e-11 Score=120.39 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=73.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.++|||||+++|+........ .. ..|.+.... .+.+. +.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~------------t~~~~~~~~--~~~~~--------------~~ 62 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PH------------TIGVEFGTR--IIEVS--------------GQ 62 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--TT------------SCCCCEEEE--EEEET--------------TE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CC------------ccceEEEEE--EEEEC--------------Ce
Confidence 45789999999999999999999764321110 00 011222111 12221 23
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
...++|+||||+.+|.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 5689999999999999999999999999999999986 111 233446699999986
No 50
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.25 E-value=2.4e-11 Score=119.11 Aligned_cols=107 Identities=21% Similarity=0.186 Sum_probs=72.9
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccC
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (831)
......+|+++|+.|+|||||+++|+...-... ....++.......+.+.
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~-------------- 52 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQ----------------LFHTIGVEFLNKDLEVD-------------- 52 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC--------------------CCSEEEEEEEEEET--------------
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCceeeeEEEEEEEEC--------------
Confidence 344567999999999999999999965421100 00111111112223332
Q ss_pred CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh---h-----hCCCcEEEEecCcch
Q 003316 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL---G-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~---~-----~~~~~ii~iNKiD~~ 151 (831)
+....+.|+||||+.+|.......++.+|++++|+|+.. .+ . .+.|.++|+||+|+.
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 53 GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 234689999999999999888888999999999999876 11 1 233446699999986
No 51
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.23 E-value=1.3e-11 Score=121.01 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=72.5
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccccc
Q 003316 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (831)
Q Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (831)
.++.+..+|+++|+.|+|||||+++|+...-.... ...+++......+.+.
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~------------- 59 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY----------------QATIGIDFLSKTMYLE------------- 59 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----------------CCCCSEEEEEEEEEET-------------
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCceeeEEEEEEEEEC-------------
Confidence 33444578999999999999999999754221110 1112222222222332
Q ss_pred CCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 94 ~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+....+.|+||||+.+|.......++.+|++|+|+|+.. .+. ...|.++|+||+|+.
T Consensus 60 -~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 60 -DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp -TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred -CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 234689999999999999888889999999999999965 111 133446699999986
No 52
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.23 E-value=3.2e-11 Score=120.21 Aligned_cols=100 Identities=18% Similarity=0.112 Sum_probs=71.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+++|+.|+|||||+++|+...-.... .-|+......+.+ ..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~----------------~~ 66 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDM------------------IPTVGFNMRKITK----------------GN 66 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC------------------CCCCSEEEEEEEE----------------TT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCcc------------------CCCCceeEEEEEe----------------CC
Confidence 4578999999999999999999654211000 0011111122333 37
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+.++|+||||+.+|.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137 (188)
T ss_dssp EEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred EEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence 899999999999999888889999999999999864 111 234456699999987
No 53
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.23 E-value=2.7e-11 Score=118.96 Aligned_cols=107 Identities=19% Similarity=0.193 Sum_probs=73.2
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccccc
Q 003316 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (831)
Q Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (831)
..+.+..+|+++|+.|+|||||+++|+...-. ....++ .+.+.. ..+.+.
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t------------~~~~~~---~~~~~~------------- 53 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPT------------IEDSYT---KICSVD------------- 53 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTT------------CCEEEE---EEEEET-------------
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCC------------cCceEE---EEEEEC-------------
Confidence 34466789999999999999999999765211 100110 011111 112221
Q ss_pred CCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 94 ~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+....++|+||||+.+|.......++.+|++++|+|+.. .+. .+.|.++|+||+|+.
T Consensus 54 -~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 54 -GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp -TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred -CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 234689999999999998778888999999999999886 111 134556699999986
No 54
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.23 E-value=2.4e-11 Score=121.55 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=70.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|+.|+|||||+++|+...-. .+....++.......+.+. +..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~--------------~~~ 74 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFC----------------EACKSTVGVDFKIKTVELR--------------GKK 74 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEET--------------TEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC----------------cCCCCccceeEEEEEEEEC--------------CeE
Confidence 3578999999999999999999322110 0011111222222223332 235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+.+.|+||||+.+|.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 75 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 689999999999999999999999999999999886 111 134446699999986
No 55
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.23 E-value=1.9e-11 Score=120.18 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=62.4
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
.....+|+++|+.|+|||||+++|+...-.... ...++.......+.+. ++
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~-------------~~ 55 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQY----------------KATIGADFLTKEVTVD-------------GD 55 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-------------------CCCSCEEEEECCS-------------SS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCccc----------------CCccceEEEEEEEEEc-------------CC
Confidence 456789999999999999999999764311100 0011111111112221 12
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh-h-------hCCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL-G-------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~-~-------~~~~~ii~iNKiD~~ 151 (831)
....++|+||||+.+|.......++.+|++|+|+|+.+ .+ . ...|.++|+||+|+.
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 35789999999999998888888899999999999875 11 1 234556699999985
No 56
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.23 E-value=3.4e-11 Score=116.47 Aligned_cols=96 Identities=21% Similarity=0.181 Sum_probs=69.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|+++|+.|+|||||+++|+...-. . +.+ |+......+.+ ++..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~--~----------~~~-------t~~~~~~~~~~----------------~~~~~ 46 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV--T----------TIP-------TIGFNVETVEY----------------KNISF 46 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS--C----------CCC-------CSSCCEEEEEC----------------SSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC--c----------ccC-------cCceeEEEEEE----------------CCEEE
Confidence 7999999999999999999764311 1 000 11111122333 36799
Q ss_pred EEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh----CCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~----~~~~ii~iNKiD~~ 151 (831)
+++||||+.+|.......++.+|++++|+|+.+ .+.. ..|.++|+||+|+.
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence 999999999999888889999999999999875 1111 33446699999987
No 57
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.23 E-value=1.8e-11 Score=130.09 Aligned_cols=100 Identities=21% Similarity=0.313 Sum_probs=70.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++|+.|+|||||+++|+.... ... ...|+|+......+.+. +..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~----------~v~------~~~g~t~~~~~~~~~~~----------------~~~ 51 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQ----------RVG------NWAGVTVERKEGQFSTT----------------DHQ 51 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCE----------EEE------ECTTSSSEEEEEEEECS----------------SCE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc----------ccC------CCCCeeEEEEEEEEEeC----------------CCc
Confidence 5899999999999999999954321 011 11255665555555553 678
Q ss_pred EEEEeCCCCcchHH---------HHHH---HhhhcCeEEEEEecHH----------HhhhCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSS---------EVTA---ALRITDGALVVVDCIE----------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~---------ev~~---al~~~D~avlVvda~~----------~~~~~~~~ii~iNKiD~~ 151 (831)
++|+||||+.+|.. .+.+ ..+.+|++|+|+|+.. ....+.|.++|+||+|+.
T Consensus 52 ~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp EEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred eEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccch
Confidence 99999999988761 1222 2368999999999987 223355667799999986
No 58
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.23 E-value=2e-11 Score=122.76 Aligned_cols=105 Identities=22% Similarity=0.298 Sum_probs=70.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+...-. .. . ....|.+... ..+.+. +.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~-~-----------~~t~~~~~~~--~~~~~~--------------~~ 75 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFR--EN-I-----------SATLGVDFQM--KTLIVD--------------GE 75 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEE--EEEEET--------------TE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCC--cc-C-----------CCCccceeEE--EEEEEC--------------CE
Confidence 45689999999999999999999654211 00 0 0001122211 122221 23
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
...++|+||||+.+|.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 5689999999999999999999999999999999975 111 134556699999986
No 59
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.23 E-value=2.1e-11 Score=118.30 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=70.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++|+.|+|||||+++|+...-.... . ..-|.+... ..+.+. +....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~--~------------~~~~~~~~~--~~~~~~--------------~~~~~ 53 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENK--E------------PTIGAAFLT--QRVTIN--------------EHTVK 53 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTC--C------------CCSSEEEEE--EEEEET--------------TEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCC--C------------CccceeEEE--EEEEEC--------------CEEEE
Confidence 58999999999999999999754321100 0 001222221 122221 23568
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+.++||||+.+|.......++.+|++++|+|+.. .+. ...|.++|+||+|+.
T Consensus 54 ~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 54 FEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 9999999999999888899999999999999886 111 133445699999987
No 60
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.22 E-value=1.9e-11 Score=118.57 Aligned_cols=104 Identities=21% Similarity=0.220 Sum_probs=71.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|+.|+|||||+++|+...-.... +...|.+.... .+.+. +..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~~~~~~~~~~--~~~~~--------------~~~ 54 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQ--------------ESTIGAAFLTQ--TVCLD--------------DTT 54 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--------------CCCSSEEEEEE--EEEET--------------TEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCccceEEEEE--EEEEC--------------CEE
Confidence 4568999999999999999999653211000 01112222222 22221 236
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh-hh---CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL-GE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~-~~---~~~~ii~iNKiD~~ 151 (831)
+.++++||||+.+|.......++.+|++|+|+|+.. .+ .. ..|.++|.||+|+.
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 789999999999999888899999999999999975 11 11 23335588999986
No 61
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.22 E-value=1.6e-11 Score=124.17 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=73.7
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccc
Q 003316 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 91 (831)
Q Consensus 12 ~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (831)
.|.......+|+++|+.|+|||||+++|+...-. .. .+ ..+++......+.+.
T Consensus 19 ~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~--~~-~~-------------~t~~~~~~~~~~~~~----------- 71 (201)
T 2ew1_A 19 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFP--PG-QG-------------ATIGVDFMIKTVEIN----------- 71 (201)
T ss_dssp ---CCSEEEEEEEEESTTSSHHHHHHHHHHSSCC--TT-CC-------------CCCSEEEEEEEEEET-----------
T ss_pred CccccccceEEEEECcCCCCHHHHHHHHHhCCCC--CC-CC-------------CccceeEEEEEEEEC-----------
Confidence 3444556789999999999999999999654211 10 01 111122112223332
Q ss_pred ccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh---h-CCCcEEEEecCcch
Q 003316 92 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG---E-RIRPVLTVNKMDRC 151 (831)
Q Consensus 92 ~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~---~-~~~~ii~iNKiD~~ 151 (831)
+..+.++|+||||+.+|.......++.+|++|+|+|+.. .+. . ..|.++|+||+|+.
T Consensus 72 ---~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 72 ---GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp ---TEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred ---CEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 235689999999999999888888999999999999875 111 1 23445699999986
No 62
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.22 E-value=1e-10 Score=112.99 Aligned_cols=103 Identities=20% Similarity=0.271 Sum_probs=68.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+++|+.|+|||||+++|+...- .....++ .+.+. ...+.+. +..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t------------~~~~~---~~~~~~~--------------~~~ 51 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPT------------KADSY---RKKVVLD--------------GEE 51 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTT------------CCEEE---EEEEEET--------------TEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCC------------cceEE---EEEEEEC--------------CEE
Confidence 357899999999999999999976431 1100110 01111 1112221 235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
+.++|+||||+.+|.......++.+|++++|+|+.+ .+. .+.|.++++||+|+.
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 689999999999999988999999999999999985 111 134556699999986
No 63
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.22 E-value=1.7e-11 Score=122.80 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=71.4
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
+....+|+++|+.|+|||||+++|+...-... ++.+ |+......+.+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~----------~~~~-------t~~~~~~~~~~---------------- 60 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK----------HITA-------TVGYNVETFEK---------------- 60 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC--------------CCCC-------CSSEEEEEEEE----------------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccc----------cccc-------ccceeEEEEEe----------------
Confidence 35678999999999999999999943211110 1010 11111122233
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh-----------CCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE-----------RIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~-----------~~~~ii~iNKiD~~ 151 (831)
..+.++|+||||+.+|.......++.+|++|+|+|+.+ .+.. ..|.++|+||+|+.
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 140 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA 140 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence 37899999999999998888888999999999999986 1111 44556699999987
No 64
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.22 E-value=4.4e-11 Score=131.17 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=40.3
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--H---hh---hCCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--A---LG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~--~---~~---~~~~~ii~iNKiD~~ 151 (831)
+++.++||||||+.++...+ .+.+|++|+|+|+.. . +. ...|.++|+||+|+.
T Consensus 147 ~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGD 207 (341)
T ss_dssp TTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC------CCCCHHHHHHCSEEEECCCCTT
T ss_pred cCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEEECCCCC
Confidence 36789999999999877553 589999999999975 1 11 134667899999987
No 65
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.21 E-value=3.1e-11 Score=121.74 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=72.2
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccC
Q 003316 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (831)
Q Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (831)
......+|+++|+.|+|||||+++|+...-.... ...++.......+.+ +
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~--------------~ 53 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----------------KATIGADFLTKEVMV--------------D 53 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC----------------CCCCSEEEEEEEEES--------------S
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCC----------------CCcccceEEEEEEEE--------------C
Confidence 4456789999999999999999999764321110 011111111222222 2
Q ss_pred CCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh-h-------hCCCcEEEEecCcch
Q 003316 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL-G-------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 95 ~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~-~-------~~~~~ii~iNKiD~~ 151 (831)
+..+.++|+||||+.+|.......++.+|++|+|+|+.. .+ . .+.|.++|+||+|+.
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 54 DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred CEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 235789999999999998777778899999999999875 01 1 234556799999986
No 66
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.21 E-value=2e-11 Score=120.16 Aligned_cols=105 Identities=20% Similarity=0.184 Sum_probs=72.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...-... ....++.......+.+. +.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~ 59 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEF----------------QESTIGAAFFSQTLAVN--------------DA 59 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTT----------------SCCCSCCSEEEEEEEET--------------TE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCc----------------CCCCceeEEEEEEEEEC--------------CE
Confidence 3457899999999999999999975421110 11111111111222222 23
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-h---CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-E---RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-~---~~~~ii~iNKiD~~ 151 (831)
.+.+.|+||||+.+|.......++.+|++|+|+|+.. .+. . ..|.++|+||+|+.
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 5689999999999999888889999999999999875 111 1 33445699999986
No 67
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.21 E-value=5.7e-11 Score=119.87 Aligned_cols=105 Identities=18% Similarity=0.282 Sum_probs=71.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
+...+|+++|+.|+|||||+++|+... ... +....++.......+.+. +.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~--~~~--------------~~~~t~~~~~~~~~~~~~--------------~~ 76 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGA--FSE--------------RQGSTIGVDFTMKTLEIQ--------------GK 76 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSC--C------------------------CEEEEEEEET--------------TE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCC--CCC--------------CCCCCcceEEEEEEEEEC--------------CE
Confidence 346799999999999999999996432 110 000011111112222332 22
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
...++|+||||+.+|.......++.+|++|+|+|+.+ .+. ...|.++|+||+|+.
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 4789999999999999988999999999999999876 111 223446699999987
No 68
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.21 E-value=6.5e-11 Score=117.30 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=75.3
Q ss_pred HHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhc
Q 003316 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 88 (831)
Q Consensus 9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~ 88 (831)
++++...+....+|+++|+.|+|||||+++|.... .. .+. ...|.+ ...+.+
T Consensus 6 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~--~~-------~~~------~t~g~~----~~~~~~--------- 57 (181)
T 1fzq_A 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASED--IS-------HIT------PTQGFN----IKSVQS--------- 57 (181)
T ss_dssp HHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSC--CE-------EEE------EETTEE----EEEEEE---------
T ss_pred HHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCC--CC-------ccc------CcCCeE----EEEEEE---------
Confidence 44455555667899999999999999999993221 00 000 011221 122333
Q ss_pred cccccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 89 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 89 ~~~~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
++..++++||||+..|.......++.+|++++|+|+.+ .+. ...|.++|+||+|+.
T Consensus 58 -------~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 58 -------QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (181)
T ss_dssp -------TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred -------CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence 26789999999999999888889999999999999875 111 123445699999987
No 69
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.21 E-value=1.1e-10 Score=115.14 Aligned_cols=105 Identities=21% Similarity=0.273 Sum_probs=71.8
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
.....+|+++|+.|+|||||+++|+...- .....++ .+.+. ...+.+. +
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t------------~~~~~---~~~~~~~--------------~ 63 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPT------------KADSY---RKKVVLD--------------G 63 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTT------------CCEEE---EEEEEET--------------T
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCc------------cceEE---EEEEEEC--------------C
Confidence 34568999999999999999999975431 1100110 00111 1112221 2
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
..+.+.|+||||+.+|.......++.+|++++|+|+.+ ... .+.|.++|+||+|+.
T Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 64 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred EEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 34689999999999999998999999999999999985 111 134556699999986
No 70
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.21 E-value=2.3e-11 Score=119.64 Aligned_cols=106 Identities=18% Similarity=0.183 Sum_probs=65.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
+...+|+++|+.|+|||||+++|+...-..... ...++.......+.+ ++.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~---------------~~t~~~~~~~~~~~~--------------~~~ 58 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF---------------ISTVGIDFRNKVLDV--------------DGV 58 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC---------------CCCCSCEEEEEEEEE--------------TTE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCc---------------CCceeeEEEEEEEEE--------------CCE
Confidence 446799999999999999999997643221110 011111111111222 123
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
...++++||||+.+|.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 5689999999999998888888999999999999986 111 233445699999987
No 71
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.21 E-value=2.1e-11 Score=121.79 Aligned_cols=105 Identities=19% Similarity=0.191 Sum_probs=72.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...-.... . ...|.+..... +.+ ++.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--~------------~t~~~~~~~~~--~~~--------------~~~ 72 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS--R------------TTIGVEFSTRT--VML--------------GTA 72 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC--C------------CCSSEEEEEEE--EEE--------------TTE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--C------------CccceeEEEEE--EEE--------------CCE
Confidence 45679999999999999999999764322111 0 00122222111 111 123
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
...+.|+||||+.+|.......++.+|++|+|+|+.. .+. ...|.++|+||+|+.
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp EEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 6789999999999998888889999999999999876 111 123446699999987
No 72
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.20 E-value=2.4e-11 Score=124.25 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=66.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcC-CcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g-~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
.+..+|+++|+.|+|||||+++|+.... ....... |.|.......+.+ .
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~---------------~~t~~~~~~~~~~---------------~ 76 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTP---------------GRTQHINYFSVGP---------------A 76 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCC---------------CSCCCEEEEEESC---------------T
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCC---------------CcccceEEEEecC---------------C
Confidence 3567999999999999999999965431 1111111 2233222221111 1
Q ss_pred CCeeEEEEeCCCCcc----------hHH---HHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcc
Q 003316 96 NEYLINLIDSPGHVD----------FSS---EVTAALRITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDR 150 (831)
Q Consensus 96 ~~~~inliDTPGh~d----------f~~---ev~~al~~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~ 150 (831)
++..++|+||||+.+ |.. ...+....+|++++|+|+.+ .+.. +.|.++|+||+|+
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 357899999999733 233 33344445888999999975 2333 4455669999998
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 157 ~ 157 (223)
T 4dhe_A 157 L 157 (223)
T ss_dssp S
T ss_pred C
Confidence 7
No 73
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.20 E-value=2.6e-11 Score=118.07 Aligned_cols=99 Identities=20% Similarity=0.144 Sum_probs=71.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+++|+.|+|||||+++|+...- .. . ..|+......+.+. .
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~----------~-------~~t~~~~~~~~~~~----------------~ 50 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEV--VT----------T-------IPTIGFNVETVTYK----------------N 50 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC--CC----------C-------CCCSSEEEEEEEET----------------T
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC--CC----------c-------CCcCccceEEEEEC----------------C
Confidence 457899999999999999999965321 11 0 01111112233442 6
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
..+.++||||+.+|.......++.+|++++|+|+.. .+. .+.|.++|+||+|+.
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 799999999999998887788899999999999875 111 234445699999987
No 74
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.20 E-value=2.4e-11 Score=138.65 Aligned_cols=103 Identities=22% Similarity=0.318 Sum_probs=72.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|+.|+|||||+++|+.....+... ..|+|.......+.+. +
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~----------------~ 242 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN---------------VAGTTRDAVDTSFTYN----------------Q 242 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC---------------------CTTSEEEEET----------------T
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCC---------------CCCeEEEEEEEEEEEC----------------C
Confidence 46899999999999999999997543322221 1245666655666664 6
Q ss_pred eeEEEEeCCC----------CcchHHH-HHHHhhhcCeEEEEEecHH-----------Hh-hhCCCcEEEEecCcch
Q 003316 98 YLINLIDSPG----------HVDFSSE-VTAALRITDGALVVVDCIE-----------AL-GERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPG----------h~df~~e-v~~al~~~D~avlVvda~~-----------~~-~~~~~~ii~iNKiD~~ 151 (831)
..++|||||| +..|... ...+++.+|++|+|+|+.+ .+ ..+.|.++|+||+|+.
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 319 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 7899999999 4556544 3458899999999999987 22 2345556699999987
No 75
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.20 E-value=6.2e-11 Score=116.28 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=72.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+...-. .+....++.......+.+. ++.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~-------------~~~ 54 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG----------------KQYKQTIGLDFFLRRITLP-------------GNL 54 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT----------------HHHHHTTTSSEEEEEEEET-------------TTE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC----------------CCCCCceeEEEEEEEEEeC-------------CCC
Confidence 44578999999999999999999643211 0001111111112223332 112
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh------CCCc-EEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE------RIRP-VLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~------~~~~-ii~iNKiD~~ 151 (831)
...++|+||||+.+|.......++.+|++|+|+|+.+ .+.. ..|+ ++|+||+|+.
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 4789999999999998888889999999999999876 1112 4564 4599999986
No 76
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.19 E-value=2.7e-11 Score=127.53 Aligned_cols=103 Identities=21% Similarity=0.383 Sum_probs=72.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|....- ...+ ..|+|+......+.+.
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~----------~~~~------~pg~tv~~~~~~~~~~---------------- 50 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQ----------YVAN------WPGVTVEKKEGVFTYK---------------- 50 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCE----------EEEE------CTTSCCEEEEEEEEET----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCC----------cccC------CCCceEEEEEEEEEEC----------------
Confidence 3457899999999999999999943210 1111 1266776666556553
Q ss_pred CeeEEEEeCCCCcchHH-----HHHHH-h--hhcCeEEEEEecHH---------Hhhh-CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSS-----EVTAA-L--RITDGALVVVDCIE---------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~-----ev~~a-l--~~~D~avlVvda~~---------~~~~-~~~~ii~iNKiD~~ 151 (831)
+..+.|+||||+.+|.. .+.+. + ..+|++++|+|+.. .+.+ +.|.++++||+|+.
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 67999999999988753 12222 2 47999999999986 2223 45556699999986
No 77
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.19 E-value=3e-11 Score=117.36 Aligned_cols=104 Identities=22% Similarity=0.212 Sum_probs=70.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|+.|+|||||+++|+...-... ....++.......+.+ ++..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~~~~ 51 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS----------------FITTIGIDFKIKTVDI--------------NGKK 51 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-----------------------CCEEEEEEES--------------SSCE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCC----------------CCCccceeEEEEEEEE--------------CCEE
Confidence 356899999999999999999975321100 0011121111222222 2235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
..+.|+||||+.+|.......++.+|++++|+|+.. .+. .+.|.++|+||+|+.
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 689999999999998888888999999999999875 111 133446699999984
No 78
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.19 E-value=6.6e-11 Score=114.29 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=69.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++|+.|+|||||+++|+...-.... ..+ -+... ...+.+ ++....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~------------~~~~~---~~~~~~--------------~~~~~~ 52 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKY--DPT------------IEDFY---RKEIEV--------------DSSPSV 52 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCC--CTT------------CCEEE---EEEEEE--------------TTEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccC--CCC------------cceeE---EEEEEE--------------CCEEEE
Confidence 58999999999999999999754311100 010 00000 111222 123567
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
++|+||||+.+|.......++.+|++++|+|+.+ ... .+.|.++|+||+|+.
T Consensus 53 ~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred EEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 9999999999999888889999999999999876 111 134556699999986
No 79
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.19 E-value=4.4e-11 Score=120.40 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=72.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...-.... . ...|++.... .+.+ ++.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~------------~t~~~~~~~~--~~~~--------------~~~ 55 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAF--V------------STVGIDFKVK--TIYR--------------NDK 55 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCC--C------------CCCSEEEEEE--EEEE--------------TTE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--C------------CccceeEEEE--EEEE--------------CCe
Confidence 34679999999999999999999643211100 0 0012222221 1222 123
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
...+.|+||||+.+|.......++.+|++|+|+|+.. .+. ...|.++|+||+|+.
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 5789999999999999888899999999999999975 111 134445699999986
No 80
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=4.6e-11 Score=119.42 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=72.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+...-.-.. ....|.+..... +.+ ++.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~--~~~--------------~~~ 70 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNI--------------SPTIGASFMTKT--VPC--------------GNE 70 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTC--------------CCCSSEEEEEEE--EEC--------------SSS
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCc--------------CCCcceeEEEEE--EEe--------------CCE
Confidence 34578999999999999999999754311000 001122222211 111 224
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh----CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~----~~~~ii~iNKiD~~ 151 (831)
...+.|+||||+.+|.......++.+|++|+|+|+.. .+.+ +.|.++|+||+|+.
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 6789999999999999888899999999999999976 1111 34445699999986
No 81
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=4.9e-11 Score=118.84 Aligned_cols=105 Identities=22% Similarity=0.278 Sum_probs=72.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.++|||||+++|+...-.... ....|.+.... .+.+. +.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~t~~~~~~~~--~~~~~--------------~~ 62 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPEL--------------AATIGVDFKVK--TISVD--------------GN 62 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--------------CCCCSEEEEEE--EEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccC--------------CCccceEEEEE--EEEEC--------------Ce
Confidence 34578999999999999999999654311100 00012222222 22221 23
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh-----CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE-----RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~-----~~~~ii~iNKiD~~ 151 (831)
.+.+.|+||||+.+|.......++.+|++|+|+|+.. .+.. ..|.++|+||+|+.
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 5789999999999998888889999999999999876 1111 23445699999985
No 82
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.17 E-value=2.6e-11 Score=117.51 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=71.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
+...+|+++|+.|+|||||+++|+...- ... .. ..++.......+.+. +.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~-~~-------------~t~~~~~~~~~~~~~--------------~~ 52 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIF--TKD-YK-------------KTIGVDFLERQIQVN--------------DE 52 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCC--CCC-SS-------------CCCSSSEEEEEEEET--------------TE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCC--CCC-CC-------------CceEEEEEEEEEEEC--------------CE
Confidence 3467899999999999999999975321 110 00 001111111122221 23
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh---hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~---~~~~~ii~iNKiD~~ 151 (831)
...+.++||||+.+|.......++.+|++++|+|+.. .+. ...|.++|+||+|+.
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 5689999999999998878888999999999999975 111 145556699999986
No 83
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.17 E-value=1e-10 Score=123.93 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=66.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...-....... +.|.......+.+ +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~---------------~~t~~~~~~~~~~----------------~ 85 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQ---------------SEGPRPVMVSRSR----------------A 85 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSS---------------CCCSSCEEEEEEE----------------T
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCC---------------CcceeeEEEEEee----------------C
Confidence 45789999999999999999999754322111111 2222222233333 3
Q ss_pred CeeEEEEeCCCCcchH---HHHHHHh------hhcCeEEEEEecHH------------Hhhh--C----CCcEEEEecCc
Q 003316 97 EYLINLIDSPGHVDFS---SEVTAAL------RITDGALVVVDCIE------------ALGE--R----IRPVLTVNKMD 149 (831)
Q Consensus 97 ~~~inliDTPGh~df~---~ev~~al------~~~D~avlVvda~~------------~~~~--~----~~~ii~iNKiD 149 (831)
+..++||||||+.+|. .+....+ +.+|++|+|+|... .+.+ + .+.++|+||+|
T Consensus 86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~D 165 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ 165 (270)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcc
Confidence 6789999999998874 2333333 26999999976543 1211 1 24466999999
Q ss_pred ch
Q 003316 150 RC 151 (831)
Q Consensus 150 ~~ 151 (831)
+.
T Consensus 166 l~ 167 (270)
T 1h65_A 166 FS 167 (270)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 84
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.17 E-value=3.4e-11 Score=119.91 Aligned_cols=105 Identities=25% Similarity=0.236 Sum_probs=70.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+...-.... ...++.......+.+. +.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~~ 67 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT----------------EATIGVDFRERAVDID--------------GE 67 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC----------------CCCCSCCEEEEEEEET--------------TE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCCcceEEEEEEEEEC--------------CE
Confidence 35689999999999999999999653211100 0111111111222222 23
Q ss_pred CeeEEEEeCCCCcchH-HHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFS-SEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~-~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
...++|+||||+.+|. ......++.+|++|+|+|+.. ... .+.|.++|+||+|+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred EEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5689999999999998 667778899999999999875 111 234456699999986
No 85
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.17 E-value=1e-10 Score=113.19 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=70.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|+.|+|||||+++|+... .......+ .+.+. ...+.+ ++..+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~--~~~~~~~t------------~~~~~---~~~~~~--------------~~~~~ 51 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPT------------IEDSY---RKQVEV--------------DCQQC 51 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC--CCCSCCCC------------SEEEE---EEEEES--------------SSCEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCC------------ccceE---EEEEEE--------------CCEEE
Confidence 3589999999999999999997532 11100010 00011 011111 23467
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh-h----hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL-G----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~-~----~~~~~ii~iNKiD~~ 151 (831)
.++++||||+.+|.......++.+|++++|+|+.. .+ . .+.|.++++||+|+.
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 89999999999999888889999999999999875 11 1 134556699999986
No 86
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.17 E-value=3e-11 Score=120.31 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=71.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|+.|+|||||+++|+...-.... ....|.+.... .+.+ ++..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~--~~~~--------------~~~~ 70 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAF--------------VSTVGIDFKVK--TVYR--------------HDKR 70 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--------------CCCCCCEEEEE--EEEE--------------TTEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCc--------------CCceeEEEEEE--EEEE--------------CCeE
Confidence 4679999999999999999999654321100 00112222221 1222 1236
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh----CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~----~~~~ii~iNKiD~~ 151 (831)
..++|+||||+.+|.......++.+|++|+|+|+.. .+.. +.|.++|+||+|+.
T Consensus 71 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 71 IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp EEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 789999999999998888888999999999999865 1111 34446699999986
No 87
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.17 E-value=1.3e-11 Score=122.02 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=51.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
+...+|+++|+.|+|||||+++|+...-. .+...+++.......+.+. +.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~--------------~~ 55 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN----------------STFISTIGIDFKIRTIELD--------------GK 55 (183)
T ss_dssp SEEEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCcccceeEEEEEEEC--------------CE
Confidence 45689999999999999999999532110 0111122222222233332 23
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh----CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~----~~~~ii~iNKiD~~ 151 (831)
...++|+||||+.+|.......++.+|++|+|+|+.. .+.. ..|.++|+||+|+.
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 5789999999999998777788899999999999986 1111 33446699999986
No 88
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.17 E-value=5.5e-11 Score=118.55 Aligned_cols=116 Identities=22% Similarity=0.209 Sum_probs=71.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||++.|........ .++. .......+...|.+..... . ...++.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~---~~~~-~~~~~~~~~t~~~~~~~~~----~-----------~~~~~~ 72 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGR---KGEM-VSLATEDERTLFFDFLPLD----I-----------GEVKGF 72 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGG---BCCC-EEEECSSCEEEEEEECCSS----C-----------CCSSSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccc---cccc-cccccccccceeeeecccc----c-----------ccccCC
Confidence 3457899999999999999976633211110 1100 0000000011111111000 0 012345
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecH------H---------Hhh------hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI------E---------ALG------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~------~---------~~~------~~~~~ii~iNKiD~~ 151 (831)
...++|+||||+.+|.......++.+|++|+|+|+. . .+. .+.|.++|+||+|+.
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp EEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred ceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 678999999999999999999999999999999997 2 111 234445699999987
No 89
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.17 E-value=6.5e-11 Score=117.60 Aligned_cols=115 Identities=21% Similarity=0.181 Sum_probs=72.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...-. .. ... ..|.+... ...+.+..... .....+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~-~~~-----------t~~~~~~~-~~~~~~~~~~~-----~~~~~~~ 68 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFN--SK-FIT-----------TVGIDFRE-KRVVYRANGPD-----GAVGRGQ 68 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC--CS-CCC-----------CCSEEEEE-EEEEECTTSCC-----CSSCCCE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCC--cC-ccc-----------ccceeeee-EEEEEecCCcc-----cccccCc
Confidence 45689999999999999999999753211 00 000 00111110 01111110000 0000111
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
...++|+||||+.+|.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5689999999999999999999999999999999875 111 234556699999986
No 90
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=1.3e-10 Score=112.89 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=69.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|+.|+|||||+++|+...- ...... ..+.+.. ..+.. ++..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~------------t~~~~~~---~~~~~--------------~~~~~ 51 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTF--RESYIP------------TVEDTYR---QVISC--------------DKSIC 51 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCC--CSSCCC------------CSCEEEE---EEEEE--------------TTEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC--CCCCCC------------CccccEE---EEEEE--------------CCEEE
Confidence 35899999999999999999964321 110000 0011110 01111 12356
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh------CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE------RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~------~~~~ii~iNKiD~~ 151 (831)
.+.++||||+.+|.......++.+|++++|+|+.. .+.+ ..|.++|+||+|+.
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 89999999999999988899999999999999875 1221 34556699999986
No 91
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.17 E-value=1.8e-11 Score=123.73 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=72.7
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
.....+|+++|+.|+|||||+++|+...-... ....++.......+.+. +
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------------~ 54 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTND----------------YISTIGVDFKIKTVELD--------------G 54 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTT----------------CCCSSCCCEEEEEEEET--------------T
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCCcccceeEEEEEEEC--------------C
Confidence 34568999999999999999999965431110 01112222222223332 2
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
..+.+.|+||||+.+|.......++.+|++|+|+|+.. .+. ...|.++|+||+|+.
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 35689999999999998777888899999999999876 111 123446699999987
No 92
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.17 E-value=5.2e-11 Score=120.66 Aligned_cols=104 Identities=24% Similarity=0.220 Sum_probs=70.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|+.++|||||+++|+...-.. . ....++.......+.+. +..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~---------------~~~~~~~~~~~~~~~~~--------------~~~ 68 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNP-S---------------FITTIGIDFKIKTVDIN--------------GKK 68 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCC-S---------------SSCCCSCCEEEEEEEET--------------TEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCc-c---------------cCCcccceEEEEEEEEC--------------CEE
Confidence 45789999999999999999997532110 0 00111222222223332 124
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh----CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~----~~~~ii~iNKiD~~ 151 (831)
..+.|+||||+.+|.......++.+|++|+|+|+.. .+.. ..|.++|+||+|+.
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 69 VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp EEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 689999999999998878888999999999999875 1111 34446699999984
No 93
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.17 E-value=8.4e-11 Score=116.10 Aligned_cols=104 Identities=19% Similarity=0.198 Sum_probs=70.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...-.... ..+ .+.+. ...+.+ ++.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~--~~t------------~~~~~---~~~~~~--------------~~~ 64 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY--DPT------------IEDSY---LKHTEI--------------DNQ 64 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CTT------------CCEEE---EEEEEE--------------TTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCC------------cccee---EEEEEe--------------CCc
Confidence 45679999999999999999999743211100 000 01111 111111 123
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh-h----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL-G----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~-~----~~~~~ii~iNKiD~~ 151 (831)
.+.++++||||+.+|.......++.+|++++|+|+.+ .+ . ...|.++|+||+|+.
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 5678889999999998888889999999999999986 11 1 223446699999986
No 94
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.17 E-value=2.1e-10 Score=115.38 Aligned_cols=104 Identities=21% Similarity=0.275 Sum_probs=72.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+...- .....++ .+.+. ...+.+. +.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t------------~~~~~---~~~~~~~--------------~~ 60 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPT------------KADSY---RKKVVLD--------------GE 60 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTT------------CCEEE---EEEEEET--------------TE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCc------------cceEE---EEEEEEC--------------CE
Confidence 4568999999999999999999975431 1100110 01111 1122221 23
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
.+.+.|+||||+.+|.......++.+|++++|+|+.. ... ...|.++|+||+|+.
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 4689999999999999988899999999999999985 111 134556699999986
No 95
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.16 E-value=3e-11 Score=119.82 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=70.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+... ... +. -|+......+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~----------~~-------~t~~~~~~~~~~~---------------- 60 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDT----------IS-------PTLGFNIKTLEHR---------------- 60 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSS----------CC-------CCSSEEEEEEEET----------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCc----------cc-------ccCccceEEEEEC----------------
Confidence 456789999999999999999995432 111 00 0111112233332
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+..++++||||+.+|.......++.+|++|+|+|+.+ .+. .+.|.++|+||+|+.
T Consensus 61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 6899999999999998877888899999999999875 111 124446699999987
No 96
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=7.5e-11 Score=117.16 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=67.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+...-. . +. -|+......+.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~-------~~----------~t~~~~~~~~~~~---------------- 58 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV--H-------TS----------PTIGSNVEEIVIN---------------- 58 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE--E-------EE----------CCSCSSCEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--c-------Cc----------CCCccceEEEEEC----------------
Confidence 45678999999999999999999532211 0 00 0111122233332
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+..+.++||||+.+|.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 6899999999999998888888999999999999975 111 234445699999987
No 97
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=1.4e-10 Score=116.10 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=71.6
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccc
Q 003316 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (831)
Q Consensus 13 ~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (831)
|.......+|+++|+.|+|||||+++|+...-. ..... ..+.+.. ..+.+
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~------------t~~~~~~---~~~~~------------- 51 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR--DTYIP------------TIEDTYR---QVISC------------- 51 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCC--CTTSC------------CCCEEEE---EEEEE-------------
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCC--CcccC------------cccccee---EEEEE-------------
Confidence 333445678999999999999999999763211 10000 0011110 01111
Q ss_pred cCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh------hCCCcEEEEecCcch
Q 003316 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 93 ~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~------~~~~~ii~iNKiD~~ 151 (831)
++..+.+.|+||||+.+|.......++.+|++|+|+|+.. .+. ...|.++|+||+|+.
T Consensus 52 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 52 -DKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp -TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred -CCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence 1235689999999999999888889999999999999875 111 134556699999987
No 98
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.16 E-value=5.5e-11 Score=115.59 Aligned_cols=105 Identities=17% Similarity=0.134 Sum_probs=64.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...-.... . ..++.......+.+ ++.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~--------------~t~~~~~~~~~~~~--------------~~~ 53 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKH--I--------------TTLGASFLTKKLNI--------------GGK 53 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSC--C--------------CCCSCEEEEEEEES--------------SSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCC--C--------------CccceEEEEEEEEE--------------CCE
Confidence 34578999999999999999999754311000 0 00111111112222 224
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
...+.++||||+.+|.......++.+|++++|+|+.+ .+. ...|.++|+||+|+.
T Consensus 54 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 54 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp EEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred EEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 5689999999999998877778899999999999876 111 234446699999986
No 99
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.16 E-value=6.5e-11 Score=134.42 Aligned_cols=101 Identities=25% Similarity=0.333 Sum_probs=70.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
+.|+|+|++|+|||||+++|+.....+... .-|+|.+.....+.|. +..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~---------------~~g~T~d~~~~~~~~~----------------~~~ 50 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVED---------------EEGVTRDPVQDTVEWY----------------GKT 50 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecC---------------CCCCccceeeEEEEEC----------------CeE
Confidence 579999999999999999996543222221 2256666666667774 678
Q ss_pred EEEEeCCCCcc---------hHHHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~d---------f~~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
+.||||||... +...+..+++.+|++|+|+|+.. .+.+ +.|.++|+||+|+.
T Consensus 51 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 51 FKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp EEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred EEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 99999999764 34567788999999999999875 2332 45556799999976
No 100
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.16 E-value=9.3e-11 Score=117.32 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=43.1
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh--hCCCcEEEEecCc
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG--ERIRPVLTVNKMD 149 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~--~~~~~ii~iNKiD 149 (831)
..++|+||||+.+|.......++.+|++|+|+|+.. .+. ...|.++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 789999999999999888899999999999999976 111 1234456999999
No 101
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.16 E-value=7.2e-11 Score=114.62 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=71.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+++|+.|+|||||+++|+...-.... ....|.+.... .+.+. +..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~--~~~~~--------------~~~ 54 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNI--------------NPTIGASFMTK--TVQYQ--------------NEL 54 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTC--------------CCCCSEEEEEE--EEEET--------------TEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCC--------------CCceeEEEEEE--EEEEC--------------CeE
Confidence 3468999999999999999999654311000 00112222222 22221 235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh---hCCCc-EEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG---ERIRP-VLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~---~~~~~-ii~iNKiD~~ 151 (831)
..+.++||||+.+|.......++.+|++++|+|+.. .+. ....| ++|+||+|+.
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 789999999999998888889999999999999875 111 12334 4589999987
No 102
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.15 E-value=7.3e-11 Score=117.96 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=69.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+++|+.|+|||||+++|....- .. . ..|+......+.+. +
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~--~~--~---------------~~t~~~~~~~~~~~----------------~ 66 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRL--AT--L---------------QPTWHPTSEELAIG----------------N 66 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCC--CC--C---------------CCCCSCEEEEEEET----------------T
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC--Cc--c---------------ccCCCCCeEEEEEC----------------C
Confidence 346899999999999999999965321 11 0 01122222334443 5
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
..++++||||+.+|.......++.+|++++|+|+.+ .+. .+.|.++|+||+|+.
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 899999999999988766777889999999999986 111 233445699999997
No 103
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.15 E-value=1.3e-10 Score=115.29 Aligned_cols=102 Identities=22% Similarity=0.288 Sum_probs=68.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+++|+.|+|||||+++|....- .. +...++|+......+.+. +
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~----------~~------~~~~~~t~~~~~~~~~~~----------------~ 53 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV----------YI------GNWPGVTVEKKEGEFEYN----------------G 53 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE----------EE------EECTTSCCEEEEEEEEET----------------T
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----------cc------cCCCCeeccceEEEEEeC----------------C
Confidence 457899999999999999999953210 00 011244444444444443 6
Q ss_pred eeEEEEeCCCCcchHH-----H-HHHHhh--hcCeEEEEEecHH---------Hhhh-CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSS-----E-VTAALR--ITDGALVVVDCIE---------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~-----e-v~~al~--~~D~avlVvda~~---------~~~~-~~~~ii~iNKiD~~ 151 (831)
..++++||||+.+|.. . ....++ .+|++++|+|+.. .+.+ +.|.++++||+|+.
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 7899999999998841 1 222333 4999999999986 1223 34445699999986
No 104
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.15 E-value=8.1e-11 Score=117.25 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=70.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+++|+.|+|||||+++|+........ ...|+......+.+ ++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~----------------~~ 66 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-----------------ILPTIGFSIEKFKS----------------SS 66 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-----------------CCCCSSEEEEEEEC----------------SS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------cCCccceeEEEEEE----------------CC
Confidence 4568999999999999999999443211111 01122212223333 25
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh------hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~------~~~~~ii~iNKiD~~ 151 (831)
..+.|+||||+.+|.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 799999999999998888888999999999999975 111 234446699999997
No 105
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.15 E-value=1.6e-10 Score=125.05 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=42.1
Q ss_pred CeeEEEEeCCCCcc-------------hHHHHHHHhhhcCeEEEEEecHH-------------Hhhh-CCCcEEEEecCc
Q 003316 97 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDCIE-------------ALGE-RIRPVLTVNKMD 149 (831)
Q Consensus 97 ~~~inliDTPGh~d-------------f~~ev~~al~~~D~avlVvda~~-------------~~~~-~~~~ii~iNKiD 149 (831)
...++||||||+.+ |...+..+++.+|++++|+|+.. .+.. +.|.++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 56899999999864 56677888999999999999732 1222 344566999999
Q ss_pred ch
Q 003316 150 RC 151 (831)
Q Consensus 150 ~~ 151 (831)
+.
T Consensus 210 l~ 211 (315)
T 1jwy_B 210 LM 211 (315)
T ss_dssp SS
T ss_pred cC
Confidence 87
No 106
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.15 E-value=6.6e-11 Score=120.53 Aligned_cols=115 Identities=19% Similarity=0.158 Sum_probs=72.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
++..+|+++|+.++|||||+++|+...- .. +....+++......+.+...... .......
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~--------------~~~~t~~~~~~~~~~~~~~~~~~----~~~~~~~ 82 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF--NP--------------KFITTVGIDFREKRVVYNAQGPN----GSSGKAF 82 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC--CC--------------EEEEEEEEEEEEEEEEEEC-----------CCEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC--Cc--------------CCCCceeEEEEEEEEEECCcccc----ccccCce
Confidence 4567999999999999999999953211 10 00011112111222333210000 0000111
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------Hh---h-----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------AL---G-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~~---~-----~~~~~ii~iNKiD~~ 151 (831)
...++|+||||+.+|.......++.+|++|+|+|+.. .+ . ...|.++|+||+|+.
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 5689999999999999989999999999999999876 11 1 223445699999986
No 107
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.14 E-value=8.4e-11 Score=118.39 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=65.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|... ... .+ .-|+......+.+.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~--~~~----------~~-------~~t~~~~~~~~~~~---------------- 67 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDD--RLG----------QH-------VPTLHPTSEELTIA---------------- 67 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEET----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC--CCC----------cc-------CCCCCceeEEEEEC----------------
Confidence 34568999999999999999999321 110 00 01222222344443
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+..++++||||+.+|.......++.+|++++|+|+.+ .+. .+.|.++|+||+|+.
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 5899999999999887766677899999999999975 111 234445699999997
No 108
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.14 E-value=1.9e-10 Score=110.80 Aligned_cols=101 Identities=22% Similarity=0.301 Sum_probs=69.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++|+.|+|||||+++|+...-. ....++. +... ...+.+ ++..+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~------------~~~~---~~~~~~--------------~~~~~~ 52 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTI------------EDSY---RKQVVI--------------DGETCL 52 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTC------------CEEE---EEEEEE--------------TTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc--cccCCcc------------ceEE---EEEEEE--------------CCEEEE
Confidence 47999999999999999999754211 1001100 0000 111122 123567
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh-----CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE-----RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~-----~~~~ii~iNKiD~~ 151 (831)
++++||||+.+|.......++.+|++++|+|+.+ .+.. +.|.++++||+|+.
T Consensus 53 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 8999999999998888889999999999999975 1111 34556699999987
No 109
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.14 E-value=4.4e-11 Score=119.40 Aligned_cols=104 Identities=20% Similarity=0.213 Sum_probs=70.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|+.|+|||||+++|+...-..... ...|.+.. ...+.+. +..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~~~--~~~~~~~--------------~~~ 69 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------LTIGVEFG--ARMVNID--------------GKQ 69 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCSSEE--EEEEEET--------------TEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--------------CcccceeE--EEEEEEC--------------CEE
Confidence 45789999999999999999997543211100 00111111 1122221 235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
..++|+||||+.+|.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 70 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 689999999999998878889999999999999875 111 134446699999986
No 110
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.14 E-value=7.9e-11 Score=117.44 Aligned_cols=117 Identities=18% Similarity=0.265 Sum_probs=74.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...-.... .. ...+++. .+ .
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~--~~-----------~~~~~~~-------~~----------------~ 89 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV--VS-----------QEPLSAA-------DY----------------D 89 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CC----------------C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCccc--cc-----------CCCceee-------ee----------------c
Confidence 34579999999999999999999654311100 00 0001110 01 2
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhh----cCeEEEEEecH-H-------------Hhh-------hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCI-E-------------ALG-------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~----~D~avlVvda~-~-------------~~~-------~~~~~ii~iNKiD~~ 151 (831)
...++++||||+.+|.......++. +|++|+|+|+. . .+. .+.|.++|+||+|+.
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 5678999999999886555555554 89999999998 3 111 134456699999987
Q ss_pred hhccCC-CHHHHHHHHHHHHHHh
Q 003316 152 FLELQV-DGEEAYQTFQKVIENA 173 (831)
Q Consensus 152 ~~~~~~-~~~~~~~~l~~~~~~~ 173 (831)
+. ..+++.+.+.+.++.+
T Consensus 170 ----~~~~~~~~~~~l~~~l~~l 188 (193)
T 2ged_A 170 ----TARPPSKIKDALESEIQKV 188 (193)
T ss_dssp ----TCCCHHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHHH
Confidence 43 4566666666555543
No 111
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.13 E-value=1.2e-10 Score=113.43 Aligned_cols=101 Identities=22% Similarity=0.306 Sum_probs=65.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|+.|+|||||+++|....-. .+ ...|+|+......+.+. +.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-----~~-----------~~~~~t~~~~~~~~~~~----------------~~ 50 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-----IG-----------NWPGVTVEKKEGEFEYN----------------GE 50 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-----CC----------------CCCCCEEEEEET----------------TE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-----cc-----------CCCCcceeeeEEEEEEC----------------Cc
Confidence 368999999999999999999532110 11 01133444333344443 57
Q ss_pred eEEEEeCCCCcchHH-----HH-HHHh--hhcCeEEEEEecHH---------Hhh-hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSS-----EV-TAAL--RITDGALVVVDCIE---------ALG-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~-----ev-~~al--~~~D~avlVvda~~---------~~~-~~~~~ii~iNKiD~~ 151 (831)
.+.++||||+.+|.. .+ ...+ ..+|++++|+|+.. .+. .+.|.++|.||+|+.
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred EEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 899999999988741 12 2333 37999999999875 122 244556699999986
No 112
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.13 E-value=2.6e-10 Score=116.25 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=75.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+...-........ .|+... + .
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~---------------~~~~~~-----~----------------~ 53 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE---------------PLSAAD-----Y----------------D 53 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSS---------------CEEETT-----G----------------G
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecC---------------ceEEEE-----e----------------e
Confidence 456799999999999999999997643111000000 011000 0 2
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhh----cCeEEEEEecH-H-------------Hhh-------hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCI-E-------------ALG-------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~----~D~avlVvda~-~-------------~~~-------~~~~~ii~iNKiD~~ 151 (831)
...++++||||+.+|.......++. +|++|+|+|+. . .+. .+.|.++|+||+|+.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 5678999999999998887777777 99999999998 2 111 234456699999997
Q ss_pred hhccCCC-HHHHHHHHHHHHH
Q 003316 152 FLELQVD-GEEAYQTFQKVIE 171 (831)
Q Consensus 152 ~~~~~~~-~~~~~~~l~~~~~ 171 (831)
... .+++.+.+.+.+.
T Consensus 134 ----~~~~~~~~~~~l~~~~~ 150 (218)
T 1nrj_B 134 ----TARPPSKIKDALESEIQ 150 (218)
T ss_dssp ----TCCCHHHHHHHHHHHHH
T ss_pred ----ccCCHHHHHHHHHHHHH
Confidence 543 3444444443333
No 113
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.13 E-value=9.8e-11 Score=115.92 Aligned_cols=102 Identities=23% Similarity=0.252 Sum_probs=67.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.-+|+++|+.|+|||||+++|+...-.... .++ +.......+.+ ++..+
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t---------------~~~~~~~~~~~--------------~~~~~ 52 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEY--DPT---------------IEDSYRKQVVI--------------DGETC 52 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCC--CTT---------------CCEEEEEEEEE--------------TTEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCC---------------chheEEEEEEE--------------CCcEE
Confidence 458999999999999999999754321110 110 00000111122 12356
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
.++|+||||+.+|.......++.+|++++|+|+.. .+. .+.|.++|+||+|+.
T Consensus 53 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp EEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred EEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 78899999999998888889999999999999875 111 134456699999987
No 114
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.13 E-value=4.3e-11 Score=120.63 Aligned_cols=105 Identities=22% Similarity=0.217 Sum_probs=69.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...-... ....++.......+.+. +.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------------~~ 72 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD----------------SNHTIGVEFGSRVVNVG--------------GK 72 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEET--------------TE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCcc----------------CCCcccceeEEEEEEEC--------------Ce
Confidence 4567999999999999999999953321100 00111111111222221 23
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
...++|+||||+.+|.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 4789999999999888777888999999999999875 111 133446699999986
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.13 E-value=1.6e-10 Score=113.63 Aligned_cols=101 Identities=20% Similarity=0.272 Sum_probs=65.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++|+.|+|||||+++|......+..... |+|.......+.+. +..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~---------------~~t~~~~~~~~~~~----------------~~~ 53 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIA---------------GTTRDVLREHIHID----------------GMP 53 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSST---------------TCCCSCEEEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCC---------------CceeceeeEEEEEC----------------CeE
Confidence 47999999999999999999654322111111 22222222233332 567
Q ss_pred EEEEeCCCCcchHH--------HHHHHhhhcCeEEEEEecHH-----------Hhhh----CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSS--------EVTAALRITDGALVVVDCIE-----------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~--------ev~~al~~~D~avlVvda~~-----------~~~~----~~~~ii~iNKiD~~ 151 (831)
+.++||||..++.. .+...++.+|++++|+|+.. .+.+ +.|.++|+||+|+.
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 89999999876421 12346789999999999976 1111 34556699999986
No 116
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.12 E-value=1.3e-10 Score=116.43 Aligned_cols=100 Identities=20% Similarity=0.155 Sum_probs=65.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+.. ... +. . -|+......+.+ +
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~--~~~----------~~---~----~t~~~~~~~~~~----------------~ 71 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG--EIV----------TT---I----PTIGFNVETVEY----------------K 71 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS--CCE----------EE---E----EETTEEEEEEEE----------------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC--Ccc----------cc---C----CcCceeEEEEEE----------------C
Confidence 34578999999999999999999321 110 00 0 122111222333 3
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+..++|+||||+.+|.......++.+|++|+|+|+.+ .+. .+.|.++|+||+|+.
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCC
Confidence 6899999999999998888888999999999999975 111 134446699999987
No 117
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.12 E-value=1e-10 Score=114.19 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=62.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|+.|+|||||+++|+...-.... ...|.+.... .+.+. +..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~---------------~~~~~~~~~~--~~~~~--------------~~~ 51 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH---------------EQLGEDVYER--TLTVD--------------GED 51 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C---------------CCSSSSEEEE--EEEET--------------TEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc---------------CccccceeEE--EEEEC--------------CEE
Confidence 4568999999999999999999532211110 0112222221 12221 235
Q ss_pred eeEEEEeCCCCcch--HHHHHHHhhhcCeEEEEEecHH------------Hhhh-----CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDF--SSEVTAALRITDGALVVVDCIE------------ALGE-----RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df--~~ev~~al~~~D~avlVvda~~------------~~~~-----~~~~ii~iNKiD~~ 151 (831)
..+.++||||+.++ .......++.+|++++|+|+.. .+.. +.|.++|+||+|+.
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 68999999999884 4444556678999999999975 1222 34556699999987
No 118
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.12 E-value=4.4e-11 Score=119.42 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=72.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...-.... .. ..|++.... .+.+ .+.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------~~--------t~~~~~~~~--~~~~--------------~~~ 70 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAF------VS--------TVGIDFKVK--TVYR--------------HEK 70 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCE------EE--------EETTTEEEE--EEEE--------------TTT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCccc------CC--------CeeeEEEEE--EEEE--------------CCE
Confidence 34578999999999999999999765321100 00 001122111 1222 224
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
...+.|+||||+.+|.......++.+|++|+|+|+.+ .+. ...|.++|+||+|+.
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 6789999999999999999999999999999999975 111 133445699999986
No 119
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.11 E-value=1.8e-10 Score=115.05 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=71.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...- ......+ .+.+.. ..+.+ ++.
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t------------~~~~~~---~~~~~--------------~~~ 69 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPT------------VFENFS---HVMKY--------------KNE 69 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCC------------SEEEEE---EEEEE--------------TTE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCe------------eeeeeE---EEEEE--------------CCE
Confidence 4457899999999999999999966431 1100110 011111 11122 123
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
.+.++|+||||+.+|.......++.+|++|+|+|+.+ .+.. ..|.++|+||+|+.
T Consensus 70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 5678999999999998888888999999999999886 1111 24446699999986
No 120
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.11 E-value=8.1e-11 Score=118.55 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=69.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+...-.... ..+ .+.+. .... .+ ++.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t------------~~~~~-~~~~--~~--------------~~~ 70 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY--DPT------------VENTY-SKIV--TL--------------GKD 70 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC--CCC------------SEEEE-EEEE--C------------------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC--CCc------------cceEE-EEEE--EE--------------CCE
Confidence 45689999999999999999999754321110 000 01111 1111 11 224
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
.+.++|+||||+.+|.......++.+|++|+|+|+.. .+. ...|.++|+||+|+.
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 6789999999999998777888899999999999985 111 134556699999986
No 121
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.11 E-value=1.1e-10 Score=121.16 Aligned_cols=105 Identities=22% Similarity=0.252 Sum_probs=66.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...-... + ....++|.......+.|.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~----~----------~~~~~~t~~~~~~~~~~~---------------- 76 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHS----G----------TAAKSITKKCEKRSSSWK---------------- 76 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEET----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCcc----C----------CCCCceeeeEEEEEEEeC----------------
Confidence 4578999999999999999999965432111 1 111234555444555553
Q ss_pred CeeEEEEeCCCCcch-------HHHHHHH----hhhcCeEEEEEecHH----------Hhh------hCCCcEEEEecCc
Q 003316 97 EYLINLIDSPGHVDF-------SSEVTAA----LRITDGALVVVDCIE----------ALG------ERIRPVLTVNKMD 149 (831)
Q Consensus 97 ~~~inliDTPGh~df-------~~ev~~a----l~~~D~avlVvda~~----------~~~------~~~~~ii~iNKiD 149 (831)
+..++||||||+.+. ..++.+. .+.+|++|+|+|+.. .+. ...|.++|+||+|
T Consensus 77 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D 156 (239)
T 3lxx_A 77 ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKD 156 (239)
T ss_dssp TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGG
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCc
Confidence 679999999997653 2233333 345699999999754 111 1235567999999
Q ss_pred ch
Q 003316 150 RC 151 (831)
Q Consensus 150 ~~ 151 (831)
+.
T Consensus 157 ~~ 158 (239)
T 3lxx_A 157 DL 158 (239)
T ss_dssp GC
T ss_pred cC
Confidence 86
No 122
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.11 E-value=8e-11 Score=116.42 Aligned_cols=99 Identities=18% Similarity=0.163 Sum_probs=70.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+++|+.|+|||||+++|+...- .. +. -|+......+.+. +
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~-------~~----------~t~~~~~~~~~~~----------------~ 64 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV--VH-------TS----------PTIGSNVEEIVIN----------------N 64 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC--EE-------EE----------CCSSSSCEEEEET----------------T
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--Cc-------cC----------CcCceeeEEEEEC----------------C
Confidence 457899999999999999999964321 00 00 0111112233332 6
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
..+.|+||||+.+|.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135 (181)
T ss_dssp EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence 899999999999998777888899999999999876 111 233445699999987
No 123
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.11 E-value=9.3e-11 Score=119.95 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=72.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHc-CCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA-GIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~-g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
....+|+++|+.|+|||||+++|+... ...... ..|+|.......+ ++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~---------------t~~~~~~~~~~~~----------------~~ 61 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVA---------------TLGVEVHPLVFHT----------------NR 61 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEET---------------TTTEEEEEEEEEE----------------TT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC---------------ccceeEEEEEEEE----------------CC
Confidence 456789999999999999999965332 111111 1133333222222 12
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh---hCCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~---~~~~~ii~iNKiD~~ 151 (831)
..+.++|+||||+.+|.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSS
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccc
Confidence 36789999999999998888888999999999999986 111 145556799999987
No 124
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.10 E-value=3.6e-10 Score=113.36 Aligned_cols=105 Identities=13% Similarity=0.158 Sum_probs=70.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
++..+|+++|..|+|||||++++... .... ...+.+.......+.+. ++.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~--~~~~---------------~~~~~~~~~~~~~~~~~-------------~~~ 67 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK--MSPN---------------ETLFLESTNKIYKDDIS-------------NSS 67 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC--CCGG---------------GGGGCCCCCSCEEEEEC-------------CTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc--CCCc---------------ceeeeccccceeeeecc-------------CCC
Confidence 45678999999999999999977331 1111 01122222222222221 124
Q ss_pred CeeEEEEeCCCCcchHHHH---HHHhhhcCeEEEEEecHH-----------Hhh------hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEV---TAALRITDGALVVVDCIE-----------ALG------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev---~~al~~~D~avlVvda~~-----------~~~------~~~~~ii~iNKiD~~ 151 (831)
...++|+||||+.+|.... ...++.+|++|+|+|+.+ .+. ...|.++|.||+|+.
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp SCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred eeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 6789999999999998776 788999999999999986 111 133445699999987
No 125
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.10 E-value=6.9e-11 Score=116.48 Aligned_cols=103 Identities=22% Similarity=0.241 Sum_probs=68.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+++|+.|+|||||+++|+...- ......+ .+.+. ...+.+ ++..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~t------------~~~~~---~~~~~~--------------~~~~ 53 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPT------------IENTF---TKLITV--------------NGQE 53 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTT------------CCEEE---EEEEEE--------------TTEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCC------------ccccE---EEEEEE--------------CCEE
Confidence 457899999999999999999974431 1100110 01111 111122 1235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh-h----hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL-G----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~-~----~~~~~ii~iNKiD~~ 151 (831)
+.++|+||||+.+|.......++.+|++++|+|+.. .+ . ...|.++|+||+|+.
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 788999999999987666677889999999999976 11 1 134556699999985
No 126
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.10 E-value=7.5e-11 Score=119.30 Aligned_cols=104 Identities=16% Similarity=0.117 Sum_probs=70.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+...-.-.. .+ .+.......+.+ ++.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--~~---------------t~~~~~~~~~~~--------------~~~ 76 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IP---------------TVFDNYSANVMV--------------DGK 76 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C--CC---------------CSEEEEEEEEEC--------------C-C
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc--CC---------------eecceeEEEEEE--------------CCE
Confidence 34568999999999999999999754221110 11 010000111112 224
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
.+.++|+||||+.+|.......++.+|++|+|+|+.+ .+.. +.|.++|+||+|+.
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 77 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence 5678899999999998888888999999999999886 1111 44556699999988
No 127
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.09 E-value=1.1e-10 Score=115.13 Aligned_cols=100 Identities=21% Similarity=0.223 Sum_probs=66.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+. +. +..+ .-|+......+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~----------~~--~~~~-------~~t~~~~~~~~~~~---------------- 60 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI----------GE--VVTT-------KPTIGFNVETLSYK---------------- 60 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC----------SE--EEEE-------CSSTTCCEEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc----------CC--cCcc-------CCcCccceEEEEEC----------------
Confidence 4568999999999999999999931 11 1000 01111122233332
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+..++++||||+.+|.......++.+|++++|+|+.. .+. .+.|.++|+||+|+.
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 132 (183)
T ss_dssp TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence 6899999999999988777788899999999999865 111 223445699999987
No 128
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.09 E-value=1.9e-10 Score=111.71 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=60.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
+-+|+++|+.|+|||||+++|+......... ...+.......+.+ ++..+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~--------------~~~~~ 51 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE----------------MENSEDTYERRIMV--------------DKEEV 51 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEE--------------TTEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc----------------CCCcCCeeeEEEEE--------------CCeEE
Confidence 4689999999999999999995332211110 00111111112222 12357
Q ss_pred eEEEEeCCCCcchHH-HHHHHhhhcCeEEEEEecHH-------------Hhhh----CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIE-------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~-ev~~al~~~D~avlVvda~~-------------~~~~----~~~~ii~iNKiD~~ 151 (831)
.+.++||||+.+|.. .....++.+|++++|+|+.. .... +.|.++|+||+|+.
T Consensus 52 ~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 52 TLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp EEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred EEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 889999999999876 34455788999999999986 1111 34556699999986
No 129
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.09 E-value=6.7e-11 Score=120.59 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=69.5
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhcccccc
Q 003316 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (831)
Q Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (831)
.......+|+++|+.|+|||||+++|+... ... .+ ..|+........+.. .
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~------~~----------~~t~~~~~~~~~~~~-----------~ 56 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGR--FEK------NY----------NATVGAVNHPVTFLD-----------D 56 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCS--TTC------EE----------ETTTTEEEEEEEEEB-----------T
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCC--CCC------CC----------CCccceeeEEEEEEe-----------C
Confidence 344566799999999999999999984321 100 00 001111111122210 0
Q ss_pred CCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh---hh-CCCcEEEEecCcch
Q 003316 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL---GE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 94 ~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~---~~-~~~~ii~iNKiD~~ 151 (831)
.+....++|+||||+.+|.......++.+|++|+|+|+.+ .+ .. +.|.++|+||+|+.
T Consensus 57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp TSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred CCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 1123789999999999998777788899999999999986 11 11 34556699999986
No 130
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.09 E-value=8.7e-11 Score=113.80 Aligned_cols=101 Identities=17% Similarity=0.131 Sum_probs=53.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.-+|+++|+.|+|||||+++|....-.... ...|.|.. ..+.+ ++...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~---------------~~~~~~~~---~~~~~--------------~~~~~ 49 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA---------------EAAGHTYD---RSIVV--------------DGEEA 49 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE---EEEEE--------------TTEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC---------------CccccceE---EEEEE--------------CCEEE
Confidence 347999999999999999999321100000 01112221 11122 12367
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
.+.++||||+.+|.......++.+|++++|+|..+ .+. .+.|.++|+||+|+.
T Consensus 50 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 50 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp EEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred EEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 89999999999998888888999999999999985 111 134556699999986
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.08 E-value=6.4e-11 Score=134.35 Aligned_cols=101 Identities=26% Similarity=0.292 Sum_probs=63.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+|+|++|+|||||+++|+...-.+. +...|+|.+.....+.|. +..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v---------------~~~~g~T~d~~~~~~~~~----------------~~~ 52 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV---------------EDTPGVTRDRIYSSAEWL----------------NYD 52 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC--------------------------CEEEECTTC----------------SSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee---------------cCCCCCccceEEEEEEEC----------------Cce
Confidence 5899999999999999999943221111 112355555444444443 668
Q ss_pred EEEEeCCCCc--------chHHHHHHHhhhcCeEEEEEecHH-----------HhhhC-CCcEEEEecCcch
Q 003316 100 INLIDSPGHV--------DFSSEVTAALRITDGALVVVDCIE-----------ALGER-IRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~--------df~~ev~~al~~~D~avlVvda~~-----------~~~~~-~~~ii~iNKiD~~ 151 (831)
+.|+||||+. .|...+..+++.+|++|+|+|+.. .+... .|.++|+||+|+.
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 9999999986 567778889999999999999976 23333 4445699999976
No 132
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.08 E-value=1.9e-10 Score=125.44 Aligned_cols=97 Identities=22% Similarity=0.183 Sum_probs=65.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+|+|+.|+|||||+++|+... + .... -|+......+.+ .+..
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~--~----------~~~~-------pT~~~~~~~~~~----------------~~~~ 210 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGE--I----------VTTI-------PTIGFNVETVEY----------------KNIS 210 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSC--C----------EEEE-------EETTEEEEEEEE----------------TTEE
T ss_pred ceEEEECCCCccHHHHHHHHhCCC--C----------CCcc-------cccceEEEEEec----------------CcEE
Confidence 479999999999999999993211 1 0000 123223333444 3789
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh----CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~----~~~~ii~iNKiD~~ 151 (831)
++|+||||+.+|.......++.+|++|+|+|+.+ .+.. +.|.++|+||+|+.
T Consensus 211 l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp EEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence 9999999999998888899999999999999965 1111 33445699999987
No 133
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.08 E-value=8.4e-11 Score=116.08 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=69.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|+.|+|||||+++|+... .......+ . +.+. ...+.+ ++...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~--~~~~~~~t--~----------~~~~---~~~~~~--------------~~~~~ 53 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPT--V----------FDNY---SANVMV--------------DGKPV 53 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS--CCSSCCCC--S----------CCEE---EEEEEE--------------TTEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC--CCCCcCCc--c----------ccee---EEEEEE--------------CCEEE
Confidence 4689999999999999999996532 11100110 0 0000 111122 12356
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
.+.++||||+.+|.......++.+|++++|+|+.. .+.. ..|.++|+||+|+.
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 54 NLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (186)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred EEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccc
Confidence 78899999999998777778899999999999875 1111 44556699999987
No 134
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.07 E-value=3.8e-11 Score=119.43 Aligned_cols=99 Identities=20% Similarity=0.201 Sum_probs=68.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+++|+.|+|||||+++|.. +... ++.+ |+......+.+. +
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~--~~~~----------~~~~-------t~~~~~~~~~~~----------------~ 65 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL--GDVV----------TTVP-------TVGVNLETLQYK----------------N 65 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC--SCCE----------EECS-------STTCCEEEEEET----------------T
T ss_pred CceEEEEECCCCCCHHHHHHHHHc--CCCC----------CcCC-------CCceEEEEEEEC----------------C
Confidence 457899999999999999999932 1110 0000 111112233332 6
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh----CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~----~~~~ii~iNKiD~~ 151 (831)
..++++||||+.+|.......++.+|++|+|+|+.+ .+.. +.|.++|+||+|+.
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence 899999999999987766677889999999999975 1111 33445699999987
No 135
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.07 E-value=2.1e-10 Score=123.99 Aligned_cols=102 Identities=19% Similarity=0.273 Sum_probs=71.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++|..|+|||||+++|+......... ..|.|+......+.+. ++..
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~---------------~~~~Ti~~~~~~~~~~---------------~~~~ 53 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTR---------------RLGATIDVEHSHLRFL---------------GNMT 53 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGG---------------GCCCCCSEEEEEEEET---------------TTEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccc---------------CcCCccceEEEEEEeC---------------CceE
Confidence 579999999999999999985542222211 2234554444444442 3689
Q ss_pred EEEEeCCCCcch-----HHHHHHHhhhcCeEEEEEecHH------------Hhhh------CCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDF-----SSEVTAALRITDGALVVVDCIE------------ALGE------RIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df-----~~ev~~al~~~D~avlVvda~~------------~~~~------~~~~ii~iNKiD~~ 151 (831)
++|+||||+.+| .......++.+|++|+|+|+.. .+.+ +.|.++|+||+|+.
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 54 LNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp EEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred EEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 999999999998 3445566789999999999986 1111 34456699999987
No 136
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.07 E-value=6.6e-11 Score=121.39 Aligned_cols=105 Identities=22% Similarity=0.242 Sum_probs=69.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.++|||||+++|+...-.... ...++.......+.+. +.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~~ 60 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS----------------KSTIGVEFATRTLEIE--------------GK 60 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEEEEEEET--------------TE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEEC--------------CE
Confidence 45679999999999999999999654321110 0011111111222232 22
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~----~~~~~ii~iNKiD~~ 151 (831)
.+.+.|+||||+.+|.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 4689999999999998777788899999999999875 111 133445699999987
No 137
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.06 E-value=3.6e-10 Score=112.30 Aligned_cols=102 Identities=22% Similarity=0.279 Sum_probs=60.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|+.|+|||||+++|+...- .....++. +... ...+.+. +..+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~------------~~~~---~~~~~~~--------------~~~~ 69 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTI------------EDSY---RKQVVID--------------GETC 69 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTC------------CEEE---EEEEEET--------------TEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCcc------------ceEE---EEEEEEC--------------CEEE
Confidence 35899999999999999999975421 11001100 0011 1112221 2356
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
.+.|+||||+.+|.......++.+|++++|+|+.+ .+. .+.|.++|+||+|+.
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 70 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp EEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC
Confidence 79999999999999888899999999999999875 111 134556699999987
No 138
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.06 E-value=1.5e-10 Score=116.47 Aligned_cols=105 Identities=18% Similarity=0.192 Sum_probs=50.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC--
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN-- 96 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~-- 96 (831)
..+|+++|+.|+|||||+++|+............ .+.++.....+.+. +.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~--------------t~~~~~~~~~~~~~--------------~~~~ 71 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAM--------------TSGVEVVVAPVTIP--------------DTTV 71 (208)
T ss_dssp EEEEEEC------------------------------------------------CEEEECT--------------TSSE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCC--------------ccceEEEEEEEEEC--------------Cccc
Confidence 4689999999999999999996541111110000 01111112223332 22
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-------hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-------~~~~~ii~iNKiD~~ 151 (831)
.+.+.|+||||+.+|.......++.+|++|+|+|+.. .+. .+.|.++|+||+|+.
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 5789999999999999888888899999999999976 111 233446699999987
No 139
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.06 E-value=4.4e-10 Score=112.09 Aligned_cols=102 Identities=17% Similarity=0.279 Sum_probs=63.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+...- ... .. ...|.|..... +.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~--~~-----------~~~~~t~~~~~--~~~----------------- 67 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKN-LAR--TS-----------SKPGKTQTLNF--YII----------------- 67 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEE--EEE-----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccc--cC-----------CCCCceeeEEE--EEE-----------------
Confidence 4578999999999999999999964320 000 00 01122222111 111
Q ss_pred CeeEEEEeCCC----------CcchHHHHHHHhhhc---CeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPG----------HVDFSSEVTAALRIT---DGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPG----------h~df~~ev~~al~~~---D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
+..++++|||| +..|...+...++.+ |++++|+|+.. .+.+ +.|.++|+||+|+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKI 147 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 23699999999 445554455555555 99999999875 2223 34556699999987
No 140
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.06 E-value=5.9e-12 Score=126.75 Aligned_cols=105 Identities=18% Similarity=0.251 Sum_probs=68.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+... ...+...+++.......+.+. +.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~--------------~~ 80 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT----------------YTESYISTIGVDFKIRTIELD--------------GK 80 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC----------------CCCHHHHHHCCSEEEEEEEET--------------TE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC----------------CCCCcCCcccceEEEEEEEEC--------------CE
Confidence 456899999999999999999983211 011112223333333333332 23
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhhh----CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALGE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~~----~~~~ii~iNKiD~~ 151 (831)
.+.++|+||||+.+|.......++.+|++|+|+|+.+ .+.. +.|.++|+||+|+.
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 4689999999999998777788899999999999886 1211 23445699999986
No 141
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.05 E-value=6.8e-11 Score=134.96 Aligned_cols=103 Identities=25% Similarity=0.281 Sum_probs=67.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
..++|+|+|+.|+|||||+++|+...-.+ .+...|+|.......+.| .+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~---------------v~~~~g~t~~~~~~~~~~----------------~~ 70 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISI---------------VEDTPGVTRDRIYSSAEW----------------LN 70 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC--------------------------CEEEECTT----------------CS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcc---------------cCCCCCcceeEEEEEEEE----------------CC
Confidence 35799999999999999999993321111 111235565544444444 36
Q ss_pred eeEEEEeCCC--------CcchHHHHHHHhhhcCeEEEEEecHH-----------HhhhC-CCcEEEEecCcch
Q 003316 98 YLINLIDSPG--------HVDFSSEVTAALRITDGALVVVDCIE-----------ALGER-IRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPG--------h~df~~ev~~al~~~D~avlVvda~~-----------~~~~~-~~~ii~iNKiD~~ 151 (831)
..+++||||| +..|...+..+++.+|++|+|+|+.. .+.+. .|.++|+||+|+.
T Consensus 71 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 71 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp SCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred ceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 7899999999 66677788899999999999999875 33333 4445699999976
No 142
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.05 E-value=1.2e-09 Score=109.47 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=68.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...-.... ..+ .+... ...+.+ ++.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t------------~~~~~---~~~~~~--------------~~~ 74 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY--DPT------------LESTY---RHQATI--------------DDE 74 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CTT------------CCEEE---EEEEEE--------------TTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCC------------CCceE---EEEEEE--------------CCE
Confidence 34568999999999999999999764311100 000 01111 011122 123
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
.+.+.|+||||+.+ .......++.+|++++|+|+.+ .+. ...|.++|+||+|+.
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 57899999999998 6667788899999999999875 111 234456699999987
No 143
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.05 E-value=1.1e-09 Score=116.25 Aligned_cols=111 Identities=19% Similarity=0.276 Sum_probs=62.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.-||+++|+.|+|||||+++|+......... .+ .......++++......+.+. +...
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~-~~-------~~~~~~~t~~~~~~~~~~~~~--------------~~~~ 65 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEY-PG-------PSHRIKKTVQVEQSKVLIKEG--------------GVQL 65 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC----------------CCE
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCC-CC-------cccccCCceEEEEEEEEEecC--------------CeEE
Confidence 4689999999999999999994332221110 00 001112233333333333322 2345
Q ss_pred eEEEEeCCCCcch-------HHHH-------HHHhhh-------------cCeEEEEEecHH------------HhhhCC
Q 003316 99 LINLIDSPGHVDF-------SSEV-------TAALRI-------------TDGALVVVDCIE------------ALGERI 139 (831)
Q Consensus 99 ~inliDTPGh~df-------~~ev-------~~al~~-------------~D~avlVvda~~------------~~~~~~ 139 (831)
.++|+||||+.|+ ..-+ ...++. +|+++++|+... .+..+.
T Consensus 66 ~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~ 145 (274)
T 3t5d_A 66 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKV 145 (274)
T ss_dssp EEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTS
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccC
Confidence 8999999998543 1111 233333 778999986553 233445
Q ss_pred CcEEEEecCcch
Q 003316 140 RPVLTVNKMDRC 151 (831)
Q Consensus 140 ~~ii~iNKiD~~ 151 (831)
|.++|+||+|+.
T Consensus 146 pvi~V~nK~D~~ 157 (274)
T 3t5d_A 146 NIIPLIAKADTL 157 (274)
T ss_dssp CEEEEESSGGGS
T ss_pred CEEEEEeccCCC
Confidence 556699999976
No 144
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.04 E-value=7e-10 Score=110.30 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=63.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...-....... |.|... .+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~---------------~~t~~~---~~~~~---------------- 66 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTP---------------GKTRSI---NFYLV---------------- 66 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSC---------------CCCCCE---EEEEE----------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCC---------------CCccCe---EEEEE----------------
Confidence 34578999999999999999999665411111111 222211 11111
Q ss_pred CeeEEEEeCCC----------CcchHHHHHHHh---hhcCeEEEEEecHH-----------Hhhh-CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPG----------HVDFSSEVTAAL---RITDGALVVVDCIE-----------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPG----------h~df~~ev~~al---~~~D~avlVvda~~-----------~~~~-~~~~ii~iNKiD~~ 151 (831)
+..+.++|||| +..|...+...+ ..+|++++|+|+.. .+.. +.|.++|+||+|+.
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV 146 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 44688999999 333443333334 45599999999875 2233 34556699999987
No 145
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.04 E-value=1.6e-10 Score=122.41 Aligned_cols=100 Identities=22% Similarity=0.304 Sum_probs=66.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|+.|+|||||+++|....-. .| ++ .|+|+......+ .. +.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-----v~-----~~------pg~tv~~~~~~~----------------~~-~~ 49 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-----VG-----NW------PGVTVERKSGLV----------------KK-NK 49 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-----CC-----SS------SCCCCSCEEEEC----------------TT-CT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-----cc-----CC------CCCcEEEEEEEE----------------ec-CC
Confidence 468999999999999999999532111 11 11 144543322211 12 45
Q ss_pred eEEEEeCCCCcchH------HHHHHHhh--hcCeEEEEEecHH---------Hhhh-CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFS------SEVTAALR--ITDGALVVVDCIE---------ALGE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~------~ev~~al~--~~D~avlVvda~~---------~~~~-~~~~ii~iNKiD~~ 151 (831)
.++++||||+.+|. .-....++ .+|++++|+|+.. .+.+ +.|.++++||+|+.
T Consensus 50 ~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 50 DLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp TEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred eEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 79999999998875 12233344 5999999999987 2233 45556699999986
No 146
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.04 E-value=2e-10 Score=131.12 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=55.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+|+|++|+|||||+++|+.....+... ..|+|.+.....+.+. ++.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~---------------~~gtT~d~~~~~i~~~----------------g~~ 282 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSH---------------MPGTTRDYIEECFIHD----------------KTM 282 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCC---------------CCCceEEEEEEEEEEC----------------CeE
Confidence 359999999999999999996543322221 1244555444445553 689
Q ss_pred EEEEeCCCCcchHHHHHH--------HhhhcCeEEEEEecHH------------Hhh--hCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTA--------ALRITDGALVVVDCIE------------ALG--ERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~--------al~~~D~avlVvda~~------------~~~--~~~~~ii~iNKiD~~ 151 (831)
++|+||||+.++...+.. .++.+|++|+|+|+.. .+. ...|.++|+||+|+.
T Consensus 283 l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~ 356 (476)
T 3gee_A 283 FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRA 356 (476)
T ss_dssp EEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSC
T ss_pred EEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCC
Confidence 999999999887654432 4678999999999986 111 134446699999998
No 147
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.04 E-value=3.5e-10 Score=114.51 Aligned_cols=103 Identities=16% Similarity=0.105 Sum_probs=69.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|+.|+|||||+++|+...-.... .. +. +.+.. ..+.+ ++..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~--t~----------~~~~~---~~~~~--------------~~~~ 72 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVY--VP--TV----------FENYV---ADIEV--------------DGKQ 72 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEE---EEEEE--------------TTEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcC--CC--cc----------cceEE---EEEEE--------------CCEE
Confidence 3468999999999999999999764321100 00 00 11110 11122 1235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
..+.|+||||+.+|.......++.+|++|+|+|+.. .+.. +.|.++|+||+|+.
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 142 (207)
T ss_dssp EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGG
T ss_pred EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhh
Confidence 689999999999998777778899999999999875 1111 45556799999987
No 148
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.04 E-value=7.9e-10 Score=109.50 Aligned_cols=104 Identities=14% Similarity=0.111 Sum_probs=69.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+...-. .....+ .+.+. ...+.+ ++.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t------------~~~~~---~~~~~~--------------~~~ 53 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPT------------VFENY---TASFEI--------------DTQ 53 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCC------------SEEEE---EEEEEC--------------SSC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCc------------cceeE---EEEEEE--------------CCE
Confidence 44578999999999999999999764211 100000 00011 011122 224
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
...+.|+||||+.+|.......++.+|++|+|+|+.. .+.. ..|.++|.||+|+.
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 6789999999999998777777899999999999985 1111 33445699999987
No 149
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.04 E-value=3.1e-10 Score=113.25 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=70.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|+.|+|||||+++|+...- ......+ . +.+. ...+.+ ++..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t--~----------~~~~---~~~~~~--------------~~~~ 65 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPT--V----------FDHY---AVSVTV--------------GGKQ 65 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCS--S----------CCCE---EEEEES--------------SSCE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCc--c----------ccee---EEEEEE--------------CCEE
Confidence 457999999999999999999976421 1100110 0 0011 011222 2235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
+.++|+||||+.+|.......++.+|++|+|+|+.. .+.. ..|.++|+||+|+.
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 789999999999998777788899999999999875 1111 44556699999987
No 150
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.03 E-value=1.4e-10 Score=131.71 Aligned_cols=101 Identities=20% Similarity=0.285 Sum_probs=62.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+|+|++|+|||||+++|+.....+.....| +|.+.....+.+. ++.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g---------------tT~d~~~~~i~~~----------------g~~ 273 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPG---------------TTRDVVESQLVVG----------------GIP 273 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTT---------------CCHHHHHHEEEET----------------TEE
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC---------------eeEEEEEEEEEEC----------------CEE
Confidence 369999999999999999998876544332233 2322222233332 678
Q ss_pred EEEEeCCCCcchHHHHHH--------HhhhcCeEEEEEecHH--------Hh--hhCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTA--------ALRITDGALVVVDCIE--------AL--GERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~--------al~~~D~avlVvda~~--------~~--~~~~~~ii~iNKiD~~ 151 (831)
++|+||||+.++...+.. .++.+|++|+|+|+.. .+ ....|.++|+||+|+.
T Consensus 274 v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~ 343 (462)
T 3geh_A 274 VQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLV 343 (462)
T ss_dssp EEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSS
T ss_pred EEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCC
Confidence 999999999887544333 4678999999999986 11 1234556699999987
No 151
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.03 E-value=7.6e-10 Score=112.19 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=68.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|+.|+|||||+++|+...- ......+ . +... ...+.+ ++..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t--~----------~~~~---~~~~~~--------------~~~~ 56 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPT--V----------FDNF---SANVAV--------------DGQI 56 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCS--S----------CCCE---EEEEEC--------------SSCE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCc--c----------ceeE---EEEEEE--------------CCEE
Confidence 457899999999999999999975321 1100110 0 0001 011112 2235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
+.+.|+||||+.+|.......++.+|++|+|+|+.+ .+.. ..|.++|+||+|+.
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 126 (212)
T ss_dssp EEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred EEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh
Confidence 789999999999998777788899999999999875 1111 44556699999987
No 152
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.03 E-value=4.6e-10 Score=114.38 Aligned_cols=103 Identities=13% Similarity=0.170 Sum_probs=55.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+++|+.|+|||||+++|+... ....... .+.......+.+ ++..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~--~~~~~~~---------------t~~~~~~~~~~~--------------~~~~ 81 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA--FPESYTP---------------TVFERYMVNLQV--------------KGKP 81 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CC---------------CCCEEEEEEEEE--------------TTEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCC---------------ccceeEEEEEEE--------------CCEE
Confidence 45789999999999999999995321 1110000 000000111222 1235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh---hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~---~~~~~ii~iNKiD~~ 151 (831)
..++|+||||+.+|.......++.+|++|+|+|+.. .+. ...|.++|+||+|+.
T Consensus 82 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 151 (214)
T 2j1l_A 82 VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR 151 (214)
T ss_dssp EEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG
T ss_pred EEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh
Confidence 689999999999998888888999999999999875 111 144556699999987
No 153
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.02 E-value=4.5e-10 Score=113.09 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=69.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|+.|+|||||+++|....-.... ..+ . +.+.. ..+.+. +..+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t--~----------~~~~~---~~~~~~--------------~~~~ 73 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPT--V----------FENYI---ADIEVD--------------GKQV 73 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSC--CCS--S----------CCCCE---EEEEET--------------TEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCccc--CCc--c----------cceEE---EEEEEC--------------CEEE
Confidence 468999999999999999999754321110 000 0 00010 112221 2356
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
.+.|+||||+.+|.......++.+|++|+|+|+.. .+.. +.|.++|+||+|+.
T Consensus 74 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 2gco_A 74 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142 (201)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT
T ss_pred EEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh
Confidence 89999999999998777778899999999999875 1111 44556699999987
No 154
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.02 E-value=1.8e-10 Score=113.39 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=64.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|+.|+|||||+++|+... ......+ +..+ ... ..+.+ ++..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~--~~~~~~~--t~~~----------~~~---~~~~~--------------~~~~ 55 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVP--TVFD----------NFS---ANVVV--------------NGAT 55 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC--CC----------------------CB---CCCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCC--eeee----------eEE---EEEEE--------------CCEE
Confidence 34689999999999999999997543 1110011 0000 000 00001 1235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
..++|+||||+.+|.......++.+|++++|+|+.. .+.. +.|.++|+||+|+.
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR 125 (182)
T ss_dssp --CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred EEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh
Confidence 678899999999998877888899999999999875 1122 34556699999987
No 155
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.00 E-value=3.7e-10 Score=113.42 Aligned_cols=104 Identities=14% Similarity=0.108 Sum_probs=67.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|+... ......++ -+... ...+.+ ++.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t------------~~~~~---~~~~~~--------------~~~ 66 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPT------------AFDNF---SAVVSV--------------DGR 66 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CC------------SSEEE---EEEEEE--------------TTE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCc------------cccee---EEEEEE--------------CCE
Confidence 446789999999999999999996432 11100010 00011 111222 123
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
.+.+.|+||||+.+|.......++.+|++|+|+|+.. .+.. ..|.++|+||+|+.
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 67 PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp EEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred EEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 4678899999999987766677889999999999875 1111 44556699999987
No 156
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.00 E-value=8.1e-10 Score=125.41 Aligned_cols=103 Identities=17% Similarity=0.290 Sum_probs=67.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+|+|+.|+|||||+++|+.....+..... |+|.+.....+.+. +
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~---------------gtT~d~~~~~i~~~----------------g 227 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIP---------------GTTRDPVDDEVFID----------------G 227 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC---------------------CCEEEEET----------------T
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCC---------------CCcCCceEEEEEEC----------------C
Confidence 3578999999999999999999654332222112 34555444555664 6
Q ss_pred eeEEEEeCCCCcchHH------------HHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSS------------EVTAALRITDGALVVVDCIE-----------ALG-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~------------ev~~al~~~D~avlVvda~~-----------~~~-~~~~~ii~iNKiD~~ 151 (831)
..+.++||||...+.. .+..+++.+|++++|+|+.. .+. .+.+.++++||+|+.
T Consensus 228 ~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~ 305 (439)
T 1mky_A 228 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLV 305 (439)
T ss_dssp EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 6899999999854322 23567889999999999875 222 344556699999987
No 157
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.99 E-value=7.5e-10 Score=112.17 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=69.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|..|+|||||+++|+...-.... ..+ .+.+. ...+.+ ++.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~--~~t------------~~~~~---~~~~~~--------------~~~ 74 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY--VPT------------VFENY---TASFEI--------------DTQ 74 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCC------------SEEEE---EEEEES--------------SSS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCc------------cceeE---EEEEEE--------------CCE
Confidence 45679999999999999999999664211000 000 00111 011222 224
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
...+.|+||||+.+|.......++.+|++|+|+|+.. .+.. ..|.++|+||+|+.
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 6789999999999997777777899999999999985 1111 33445699999987
No 158
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.99 E-value=2e-09 Score=107.10 Aligned_cols=103 Identities=18% Similarity=0.123 Sum_probs=65.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|..|+|||||+++|+...- ......+ -+.+.. ..+.+ ++.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t------------~~~~~~---~~~~~--------------~~~ 67 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPN------------LEDTYS---SEETV--------------DHQ 67 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTT------------CCEEEE---EEEEE--------------TTE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCC------------ccceee---EEEEE--------------CCE
Confidence 3457899999999999999999976431 1100110 011110 11111 123
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-------hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-------~~~~~ii~iNKiD~~ 151 (831)
.+.+.|+||||+.+|.. +...++.+|++|+|+|+.. .+. ...|.++|+||+|+.
T Consensus 68 ~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp EEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred EEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 57899999999988865 4678899999999999985 111 244556699999986
No 159
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.98 E-value=1.6e-09 Score=111.55 Aligned_cols=103 Identities=20% Similarity=0.232 Sum_probs=64.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|..|+|||||+++|+...- ...+ ..+.|.......+.+ +
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~----------~~~~------~~~~t~~~~~~~~~~----------------~ 74 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANV----------DVQS------YSFTTKNLYVGHFDH----------------K 74 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCE----------EEEC------C-----CEEEEEEEE----------------T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC----------ccCC------CCCcceeeeeeeeec----------------C
Confidence 3568999999999999999999943210 0011 112222222222222 2
Q ss_pred CeeEEEEeCCCCcc------h---HHHHHHHhhhcCeEEEEEecHH--------------Hhhh---CCCcEEEEecCcc
Q 003316 97 EYLINLIDSPGHVD------F---SSEVTAALRITDGALVVVDCIE--------------ALGE---RIRPVLTVNKMDR 150 (831)
Q Consensus 97 ~~~inliDTPGh~d------f---~~ev~~al~~~D~avlVvda~~--------------~~~~---~~~~ii~iNKiD~ 150 (831)
+..+.|+||||+.+ . ...+....+.+|++|+|+|+.. .+.. ..|.++|+||+|+
T Consensus 75 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 154 (228)
T 2qu8_A 75 LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDK 154 (228)
T ss_dssp TEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGG
T ss_pred CCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCccc
Confidence 57899999999943 1 1222334678899999999874 1222 3444669999998
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 155 ~ 155 (228)
T 2qu8_A 155 C 155 (228)
T ss_dssp C
T ss_pred C
Confidence 6
No 160
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.97 E-value=4.2e-10 Score=128.48 Aligned_cols=101 Identities=22% Similarity=0.319 Sum_probs=72.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+|+|++|+|||||+++|+.....+.....| +|.+.....+.+. +..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~g---------------TT~d~~~~~i~~~----------------g~~ 292 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG---------------TTRDVISEEIVIR----------------GIL 292 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSC---------------CSSCSCCEEEEET----------------TEE
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCC---------------eeeeeEEEEEecC----------------CeE
Confidence 579999999999999999998875443332233 3433333444443 678
Q ss_pred EEEEeCCCCc-chH--------HHHHHHhhhcCeEEEEEecHH--------Hh--hhCCCcEEEEecCcch
Q 003316 100 INLIDSPGHV-DFS--------SEVTAALRITDGALVVVDCIE--------AL--GERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~-df~--------~ev~~al~~~D~avlVvda~~--------~~--~~~~~~ii~iNKiD~~ 151 (831)
++|+||||+. ++. ......++.+|++|+|+|+.. .+ ....|.++|+||+|+.
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 363 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSC
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccc
Confidence 9999999998 653 234677899999999999875 11 1245556799999987
No 161
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.95 E-value=1.8e-09 Score=125.50 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=43.1
Q ss_pred eeEEEEeCCCCcc-----------hHHHHHHHhhhcCeEEEEEecHH------------HhhhC-CCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIE------------ALGER-IRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~d-----------f~~ev~~al~~~D~avlVvda~~------------~~~~~-~~~ii~iNKiD~~ 151 (831)
..++||||||+.+ |...+...++.+|++|+|+|+.. .+... .+.++|+||+|+.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMV 231 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGS
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCcc
Confidence 4689999999986 77788889999999999999964 22222 3446699999987
No 162
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.95 E-value=1.6e-09 Score=110.37 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=69.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|..++|||||+++|+...-.... ..+ .+.+.. ..+.+ ++..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~--~~t------------~~~~~~---~~~~~--------------~~~~ 74 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETY--VPT------------VFENYT---ACLET--------------EEQR 74 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSC--CCC------------SEEEEE---EEEEC----------------CE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCc--CCe------------eeeeEE---EEEEE--------------CCEE
Confidence 3468999999999999999999654311100 000 011110 11111 2246
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
+.+.|+||||+.+|.......++.+|++|+|+|+.. .+.. ..|.++|.||+|+.
T Consensus 75 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 75 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred EEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 789999999999998877788899999999999976 1111 33445699999987
No 163
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.47 E-value=9.9e-11 Score=118.09 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=69.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+..+|+++|+.|+|||||+++|+... ....... .+.......+.+ ++.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~---------------t~~~~~~~~~~~--------------~~~ 76 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIP---------------TVFDNYSANVMV--------------DGK 76 (204)
Confidence 345689999999999999999995332 1110000 000000011111 123
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
...+.|+||||+.+|.......++.+|++|+|+|+.. .+.. +.|.++|+||+|+.
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 77 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 5678899999999999888888999999999999876 1111 34456699999987
No 164
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.93 E-value=7.7e-09 Score=102.62 Aligned_cols=98 Identities=15% Similarity=0.226 Sum_probs=65.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
.+.-+|+++|..|+|||||+++|+...-... +.+. +... ...+.+. +.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-----------~~~t----~~~~---~~~~~~~--------------~~ 65 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQE-----------ESPE----GGRF---KKEIVVD--------------GQ 65 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-----------CCTT----CEEE---EEEEEET--------------TE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------cCCC----cceE---EEEEEEC--------------CE
Confidence 3456899999999999999999965321100 0000 0011 0122222 23
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
.+.+.|+||||+.+|. .++.+|++++|+|+.+ .+. ...|.+++.||+|+.
T Consensus 66 ~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 66 SYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp EEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred EEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5678899999999987 7788999999999886 111 123446699999984
No 165
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.91 E-value=4e-09 Score=105.77 Aligned_cols=105 Identities=20% Similarity=0.182 Sum_probs=67.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|..|+|||||+++|......... . .+++.......+.+. +.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~--------------~--~~~~~~~~~~~~~~~--------------~~ 70 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH--------------E--PENPEDTYERRIMVD--------------KE 70 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGG--------------T--TTSCTTEEEEEEEET--------------TE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccC--------------C--CCcccceEEEEEEEC--------------CE
Confidence 45679999999999999999999322221110 0 011111111122222 23
Q ss_pred CeeEEEEeCCCCcchHH-HHHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~-ev~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
...+.++||||+.+|.. -....++.+|++|+|+|+.+ .+. ...|.++|.||+|+.
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 56788999999998765 34456788999999999975 111 134446699999986
No 166
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.91 E-value=6.5e-09 Score=101.89 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=63.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+++|..++|||||+++|+...-....... |.+. ...+.+ ++..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~---------------~~~~---~~~~~~--------------~~~~ 53 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE---------------SEQY---KKEMLV--------------DGQT 53 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCS---------------SSEE---EEEEEE--------------TTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCc---------------ceeE---EEEEEE--------------CCEE
Confidence 3468999999999999999999664211100000 1010 111222 1235
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--------H----h---hh----CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--------A----L---GE----RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~--------~----~---~~----~~~~ii~iNKiD~~ 151 (831)
..++|+||||+.++ ..++.+|++|+|+|+.. . + .. +.|.++|.||+|+.
T Consensus 54 ~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 54 HLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EEEEEEECCCCchh-----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 67999999999873 46788999999999886 1 1 11 23445699999984
No 167
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.90 E-value=1.9e-09 Score=124.33 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=72.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
+..+|+|+|..++|||||+++|+........ -|+......+.+ ++
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~-------------------~T~~~~~~~~~~----------------~~ 365 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-------------------PTVGFNVETVTY----------------KN 365 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCCC-------------------CCSSEEEEEEES----------------SS
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCcC-------------------CccceeEEEEEe----------------CC
Confidence 4578999999999999999999765411100 022222223333 36
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhh----hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~----~~~~~ii~iNKiD~~ 151 (831)
+.++|+||||+.+|.......++.+|++|+|+|+.. .+. .+.|.+||+||+|+.
T Consensus 366 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 366 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp CEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 899999999999998888888999999999999876 111 134456699999987
No 168
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.90 E-value=5.6e-09 Score=106.72 Aligned_cols=103 Identities=19% Similarity=0.203 Sum_probs=68.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
--+|+++|..++|||||+.+++... ... +.. -|+.......... .++..+
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~--f~~--------------~~~--~Tig~d~~~k~~~------------~~~~~v 62 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS--FDN--------------TYQ--ATIGIDFLSKTMY------------LEDRTI 62 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC--CC--------------------------CEEEEEE------------CSSCEE
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC--CCC--------------CcC--CccceEEEEEEEE------------ecceEE
Confidence 3479999999999999999996431 111 000 0111111111111 123467
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH------------Hh---h-hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------AL---G-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~------------~~---~-~~~~~ii~iNKiD~~ 151 (831)
.+.|+||+|..+|..-....++.+|++++|.|.+. .+ . ...|.+||.||+|+.
T Consensus 63 ~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 63 RLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp EEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred EEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 89999999999999888888999999999999887 11 1 123445599999986
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.89 E-value=3.1e-09 Score=113.82 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=39.8
Q ss_pred CeeEEEEeCCCCc-------------chHHHHHHHhhhcCeEE-EEEecHH------------Hhh-hCCCcEEEEecCc
Q 003316 97 EYLINLIDSPGHV-------------DFSSEVTAALRITDGAL-VVVDCIE------------ALG-ERIRPVLTVNKMD 149 (831)
Q Consensus 97 ~~~inliDTPGh~-------------df~~ev~~al~~~D~av-lVvda~~------------~~~-~~~~~ii~iNKiD 149 (831)
...++||||||+. .+...+...++.+|.+| +|+|+.. .+. .+.|.++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 4689999999964 34555667888888877 6899864 111 2345566999999
Q ss_pred ch
Q 003316 150 RC 151 (831)
Q Consensus 150 ~~ 151 (831)
+.
T Consensus 204 l~ 205 (299)
T 2aka_B 204 LM 205 (299)
T ss_dssp GS
T ss_pred cC
Confidence 87
No 170
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.82 E-value=5.2e-09 Score=103.53 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~ 41 (831)
.+|+++|+.|+|||||+++|+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999964
No 171
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.81 E-value=6.3e-09 Score=112.90 Aligned_cols=104 Identities=17% Similarity=0.191 Sum_probs=70.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|..|+|||||++++.... ......++ +.......+.. ++.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t---------------~~~~~~~~~~~--------------~~~ 201 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPT---------------VFDNYSANVMV--------------DGK 201 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCC---------------SEEEEEEEEEE--------------TTE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCC--CCcccCCc---------------ccceeEEEEEE--------------CCE
Confidence 445789999999999999999996542 11110110 10000111121 123
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------------Hhhh---CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------------~~~~---~~~~ii~iNKiD~~ 151 (831)
...++|+||||+.+|.......++.+|++++|+|+.+ .+.. +.|.++|+||+|+.
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLR 272 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHH
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcc
Confidence 5677899999999998777778899999999999876 1111 34556699999987
No 172
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.79 E-value=8.8e-09 Score=113.50 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=39.0
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----Hhhh---CCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----~~~~---~~~~ii~iNKiD~~ 151 (831)
.++.+.||||||...- ....+..+|++|+|+|+.. .+.. ..|.++|+||+|+.
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGE 230 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCGG
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCCc
Confidence 4678999999996542 2334589999999999875 1111 23667899999987
No 173
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.78 E-value=2.7e-08 Score=109.66 Aligned_cols=102 Identities=20% Similarity=0.285 Sum_probs=64.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
.++.|+|+|+.|+|||||+++|....- ... -..+.|.+.....+.+. +
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~~---------------~~~~~T~d~~~~~i~~~----------------g 225 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVD---------------TKLFTTMSPKRYAIPIN----------------N 225 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEET----------------T
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-ccc---------------CCcccccCCEEEEEEEC----------------C
Confidence 356799999999999999999953321 100 11233444434445553 5
Q ss_pred eeEEEEeCCCCcc-----h---HHHHHHHhhhcCeEEEEEecHH--------------Hhh----hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVD-----F---SSEVTAALRITDGALVVVDCIE--------------ALG----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~d-----f---~~ev~~al~~~D~avlVvda~~--------------~~~----~~~~~ii~iNKiD~~ 151 (831)
..+.++||||+.+ . ...+...++.+|++++|+|+.. .+. ...|.++|.||+|+.
T Consensus 226 ~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKI 305 (364)
T ss_dssp EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGC
T ss_pred EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCC
Confidence 7899999999732 1 1223445789999999999753 112 134446699999987
No 174
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.77 E-value=1.7e-08 Score=111.45 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=41.9
Q ss_pred CeeEEEEeCCCCcch-------------HHHHHHHhhhcCeEEEEEecHH----------H---hhh-CCCcEEEEecCc
Q 003316 97 EYLINLIDSPGHVDF-------------SSEVTAALRITDGALVVVDCIE----------A---LGE-RIRPVLTVNKMD 149 (831)
Q Consensus 97 ~~~inliDTPGh~df-------------~~ev~~al~~~D~avlVvda~~----------~---~~~-~~~~ii~iNKiD 149 (831)
...+.||||||..++ ...+...++.+|++|+|+|+.. . +.. +.+.++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 457999999998887 5567778899999999998743 1 112 345566999999
Q ss_pred ch
Q 003316 150 RC 151 (831)
Q Consensus 150 ~~ 151 (831)
+.
T Consensus 215 l~ 216 (360)
T 3t34_A 215 LM 216 (360)
T ss_dssp GC
T ss_pred cC
Confidence 87
No 175
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.76 E-value=1.5e-08 Score=121.13 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=40.5
Q ss_pred eeEEEEeCCCCcc---hHHHHHHHhhhcCeEEEEEecHH--------Hh----hh-CCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVD---FSSEVTAALRITDGALVVVDCIE--------AL----GE-RIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~d---f~~ev~~al~~~D~avlVvda~~--------~~----~~-~~~~ii~iNKiD~~ 151 (831)
..++||||||+.+ ....+...++.+|++|+|+|+.. .+ .. +.|.++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4699999999766 34556678889999999999964 22 22 23445699999986
No 176
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.76 E-value=6.9e-09 Score=120.78 Aligned_cols=114 Identities=13% Similarity=0.211 Sum_probs=70.5
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCC
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (831)
+....+|+++|..|+|||||+++|.... .... . ....|.++.+. ... ......-..++
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~--~~~~-~-----------~~t~g~~~~~~----~~~----~~~~v~~~~~~ 95 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGET--FDPK-E-----------SQTHGLNVVTK----QAP----NIKGLENDDEL 95 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEEEE----EGG----GSGGGTTCSTT
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCC--CCCC-C-----------CCccceEEEEe----ccc----cccceeecCCC
Confidence 3456789999999999999999995321 1000 0 00011111110 000 00000001123
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------Hhh---hCCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~~~---~~~~~ii~iNKiD~~ 151 (831)
....++++||||+..|.......++.+|++|+|+|+.. .+. ...|.++|+||+|+.
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~ 163 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDEN 163 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTC
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcc
Confidence 46799999999999998777778889999999999986 122 224556699999986
No 177
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.75 E-value=8.7e-09 Score=102.05 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=62.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
.+|+++|..|+|||||+++|........ +. + ....|+.... ..+.+. ..++....
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~----~~-----~---~~t~g~~~~~--~~~~~~-----------~~~~~~~~ 57 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDL----GM-----Q---SATVGIDVKD--WPIQIR-----------DKRKRDLV 57 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------------------CSEEEEE--EEC--------------------CE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccC----CC-----c---ceeccEEeEE--eeeccc-----------cCCCCceE
Confidence 3799999999999999999943211110 00 0 0001111111 111110 00123668
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH----------H---hhh--CCCcE-EEEecCcch
Q 003316 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------A---LGE--RIRPV-LTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~df~~ev~~al~~~D~avlVvda~~----------~---~~~--~~~~i-i~iNKiD~~ 151 (831)
+.++||||+.+|.......++.+|++++|+|.++ . +.. ...|+ +|.||+|+.
T Consensus 58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 58 LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS 125 (184)
T ss_dssp EEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC
T ss_pred EEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc
Confidence 9999999998887666667788999999999875 1 111 23454 588999987
No 178
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.74 E-value=1.4e-08 Score=101.90 Aligned_cols=103 Identities=21% Similarity=0.224 Sum_probs=67.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
..+|+++|+.|+|||||+++|....-.... . ..-|.+.. ...+.+. +...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~---~-----------~t~~~~~~--~~~i~~~--------------g~~~ 54 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES---K-----------STIGVEFA--TRSIQVD--------------GKTI 54 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----------------CCCSCEEE--EEEEEET--------------TEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC---C-----------CccceeEE--EEEEEEC--------------CEEE
Confidence 578999999999999999999654321110 0 00011111 1223332 2346
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------H---hh---hCCCc-EEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------A---LG---ERIRP-VLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~---~~---~~~~~-ii~iNKiD~~ 151 (831)
.+.++||||+..|........+.+|++++|+|... . +. ....| ++++||+|+.
T Consensus 55 ~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 55 KAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp EEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 78899999999887666667788999999999875 1 11 12344 4599999986
No 179
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.74 E-value=1.1e-08 Score=112.98 Aligned_cols=112 Identities=19% Similarity=0.268 Sum_probs=52.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.-+|+|+|+.|+|||||+++|+... .... + +.+....+...++++......+.+. +...
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~-~~~~---~---~~~~~~~~~~~ti~~~~~~~~~~~~--------------~~~~ 95 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTD-LYPE---R---VIPGAAEKIERTVQIEASTVEIEER--------------GVKL 95 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCC-C---------------------CEEEEEEEEC------------------CEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCC-CCCC---C---cccCCCcccCCceeEEEEEEEeecC--------------Cccc
Confidence 4689999999999999999984331 1111 1 1111112222333333322222221 1234
Q ss_pred eEEEEeCCCCcchHHHH-------H-------HHhhhc-------------CeEEEEEecHH------------HhhhCC
Q 003316 99 LINLIDSPGHVDFSSEV-------T-------AALRIT-------------DGALVVVDCIE------------ALGERI 139 (831)
Q Consensus 99 ~inliDTPGh~df~~ev-------~-------~al~~~-------------D~avlVvda~~------------~~~~~~ 139 (831)
.++++||||+.|+.... . ..++.+ |+++++|+... .+..+.
T Consensus 96 ~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~~~~ 175 (361)
T 2qag_A 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKV 175 (361)
T ss_dssp EEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTCS-S
T ss_pred ceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhccCC
Confidence 79999999996553211 1 233322 46888887622 223345
Q ss_pred CcEEEEecCcch
Q 003316 140 RPVLTVNKMDRC 151 (831)
Q Consensus 140 ~~ii~iNKiD~~ 151 (831)
|.|+|+||+|+.
T Consensus 176 piIlV~NK~Dl~ 187 (361)
T 2qag_A 176 NIVPVIAKADTL 187 (361)
T ss_dssp CEEEEEECCSSS
T ss_pred CEEEEEECCCCC
Confidence 667799999987
No 180
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.1e-08 Score=112.60 Aligned_cols=100 Identities=21% Similarity=0.309 Sum_probs=73.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
-.|||+|.+|+|||||+|+|......+.. .. +.|+......+.+. +.+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~-~p---------------ftT~~~~~g~~~~~----------------~~~ 120 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAE-YE---------------FTTLVTVPGVIRYK----------------GAK 120 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGG-TC---------------SSCCCEEEEEEEET----------------TEE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccC-CC---------------CceeeeeeEEEEeC----------------CcE
Confidence 47999999999999999999643322211 12 34555555555664 789
Q ss_pred EEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH----------Hhh------hCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE----------ALG------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~----------~~~------~~~~~ii~iNKiD~~ 151 (831)
+.|+||||..+ ....+...++.||++++|||+.+ .+. ...|+++++||+|+.
T Consensus 121 i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 121 IQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred EEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 99999999764 33557788999999999999986 111 135778899999985
No 181
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.72 E-value=6.3e-09 Score=113.66 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=67.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
+.+|+++|..++|||||+++|....-. ..++. ..|+......+.+. +..
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~----------i~~~~------ftTl~p~~g~v~~~---------------~~~ 206 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPK----------IADYH------FTTLVPNLGMVETD---------------DGR 206 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCE----------ESSTT------SSCCCCCEEEEECS---------------SSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCc----------cccCC------ccccCceEEEEEeC---------------CCc
Confidence 457999999999999999998332111 11111 12333333334443 236
Q ss_pred eEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecH-----H----------Hhhh------CCCcEEEEecCcc
Q 003316 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCI-----E----------ALGE------RIRPVLTVNKMDR 150 (831)
Q Consensus 99 ~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~-----~----------~~~~------~~~~ii~iNKiD~ 150 (831)
.+.|+||||+.+ +..+..+.+..+|++|+|+|+. . .+.. ..|.++|+||+|+
T Consensus 207 ~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl 286 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM 286 (342)
T ss_dssp EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS
T ss_pred eEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccC
Confidence 899999999654 4556667778899999999984 1 1221 3455679999998
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 287 ~ 287 (342)
T 1lnz_A 287 P 287 (342)
T ss_dssp T
T ss_pred C
Confidence 7
No 182
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.69 E-value=2.8e-08 Score=109.59 Aligned_cols=103 Identities=21% Similarity=0.240 Sum_probs=63.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|+.|+|||||+++|..... ...+ ..+.|.......+.+ .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~----------~~~~------~~~~t~~~~~~~~~~----------------~ 212 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP----------EIAS------YPFTTRGINVGQFED----------------G 212 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC----------EEEC------CTTCSSCEEEEEEEE----------------T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC----------ccCC------CCCeeeceeEEEEEe----------------c
Confidence 3567899999999999999999943210 0000 012222222222222 2
Q ss_pred CeeEEEEeCCCCcchH--------HHHHHHh-hhcCeEEEEEecHH--------------Hhhh---CCCcEEEEecCcc
Q 003316 97 EYLINLIDSPGHVDFS--------SEVTAAL-RITDGALVVVDCIE--------------ALGE---RIRPVLTVNKMDR 150 (831)
Q Consensus 97 ~~~inliDTPGh~df~--------~ev~~al-~~~D~avlVvda~~--------------~~~~---~~~~ii~iNKiD~ 150 (831)
+..+.++||||+.++. .....++ ..+|++++|+|+.. .+.. +.|.++|+||+|+
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 5789999999986642 1222233 36999999999653 1122 4455669999998
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 293 ~ 293 (357)
T 2e87_A 293 A 293 (357)
T ss_dssp C
T ss_pred C
Confidence 6
No 183
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.68 E-value=3e-08 Score=100.96 Aligned_cols=106 Identities=21% Similarity=0.202 Sum_probs=63.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (831)
....+|+++|..|+|||||+++++.....+...... -|.+.. ...+.+. +.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~-------------~g~d~~--~~~i~~~--------------~~ 85 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV-------------LGEDTY--ERTLMVD--------------GE 85 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----------------CCTTEE--EEEEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCc-------------cceeeE--EEEEEEC--------------Ce
Confidence 345789999999999999999996433222110000 011111 1112221 23
Q ss_pred CeeEEEEeCCCCcch-HHHHHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDF-SSEVTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df-~~ev~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
...+.++||+|.... ..-.....+.+|++|+|+|.++ .+. .+.|.++|.||+|+.
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 457789999998773 2222223467899999999875 111 133445699999986
No 184
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.62 E-value=5.8e-08 Score=96.97 Aligned_cols=105 Identities=21% Similarity=0.200 Sum_probs=62.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|..|+|||||+++|+.....+...... -|.+.. ...+.+. +..
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~--------------~~~ 55 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV-------------LGEDTY--ERTLMVD--------------GES 55 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GG-------------GCTTEE--EEEEEET--------------TEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccc-------------cceeEE--EEEEEEC--------------CeE
Confidence 35689999999999999999997654433221000 011111 1112221 234
Q ss_pred eeEEEEeCCCCcch-HHHHHHHhhhcCeEEEEEecHH------------Hhh-----hCCCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVDF-SSEVTAALRITDGALVVVDCIE------------ALG-----ERIRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df-~~ev~~al~~~D~avlVvda~~------------~~~-----~~~~~ii~iNKiD~~ 151 (831)
..+.++||+|...+ ..-.....+.+|++++|+|.++ .+. .+.|.++|.||+|+.
T Consensus 56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 57789999997652 1112334578999999999875 111 133445699999986
No 185
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.61 E-value=6.7e-08 Score=98.47 Aligned_cols=127 Identities=13% Similarity=0.164 Sum_probs=65.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecC----chhhh-eeceeeeeceeEEEEeechhhhhcccc
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDT----RQDEA-ERGITIKSTGISLYYEMTDAALKSYRG 91 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~----~~~e~-~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (831)
.++++|+++|+.|+|||||+++|+.......+ .+. ...|. ..... ..|+++..-.....+......+...-.
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~--~~~-i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVK--IGA-MLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLK 104 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSC--EEE-EECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCe--EEE-EecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHH
Confidence 46889999999999999999999887432211 110 00111 01111 113332110000000000000000000
Q ss_pred ccCCCCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--------HhhhCCCcEEEEecCcch
Q 003316 92 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 92 ~~~~~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~--------~~~~~~~~ii~iNKiD~~ 151 (831)
...+..+.+|||||..+--... -...+.+++|+|+.. ......|.++|+||+|+.
T Consensus 105 --~~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 105 --KFSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp --GGTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGH
T ss_pred --hcCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCC
Confidence 1235689999999942111000 024688999999886 112246778899999986
No 186
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.58 E-value=3.9e-08 Score=112.36 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=74.4
Q ss_pred HHHHHhhccc--------CCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecC---------chhhheecee
Q 003316 7 EELRRIMDFK--------HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDT---------RQDEAERGIT 69 (831)
Q Consensus 7 ~~~~~~~~~~--------~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~---------~~~e~~rgiT 69 (831)
+.|.+++... .+.++|+|+|+.|+|||||+++|.+........ .. ....|. .......|++
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~k-Vl-lVd~D~~r~aa~~qL~~~~~~~~i~ 158 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWK-TC-LICADTFRAGAFDQLKQNATKARIP 158 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCC-EE-EEEECCSSSHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe-EE-EEeccccchhHHHHHHHHhhccCce
Confidence 4456666531 346799999999999999999998654211000 00 011121 0111223443
Q ss_pred eeeceeEEEEeechhhh-hccccccCCCCeeEEEEeCCCCc----chHHHHHHHhh--hcCeEEEEEecHH---------
Q 003316 70 IKSTGISLYYEMTDAAL-KSYRGERQGNEYLINLIDSPGHV----DFSSEVTAALR--ITDGALVVVDCIE--------- 133 (831)
Q Consensus 70 i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~inliDTPGh~----df~~ev~~al~--~~D~avlVvda~~--------- 133 (831)
+..... ..++..+ ...-......++.+.||||||+. ++..++....+ .+|.+++|||+..
T Consensus 159 v~~~~~----~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~ 234 (504)
T 2j37_W 159 FYGSYT----EMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAK 234 (504)
T ss_dssp EEECCC----CSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHH
T ss_pred EEccCC----CCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHH
Confidence 322100 0000000 00000001136789999999976 35555544433 7899999999975
Q ss_pred HhhhCCCc-EEEEecCcch
Q 003316 134 ALGERIRP-VLTVNKMDRC 151 (831)
Q Consensus 134 ~~~~~~~~-ii~iNKiD~~ 151 (831)
.+.+..+. .+|+||+|..
T Consensus 235 ~~~~~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 235 AFKDKVDVASVIVTKLDGH 253 (504)
T ss_dssp HHHHHHCCCCEEEECTTSC
T ss_pred HHHhhcCceEEEEeCCccc
Confidence 22223453 6799999976
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.58 E-value=3.6e-08 Score=109.96 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=22.7
Q ss_pred CeeEEEEeCCCCcchHH-------HHHHHhhhcCeEEEEEecH
Q 003316 97 EYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCI 132 (831)
Q Consensus 97 ~~~inliDTPGh~df~~-------ev~~al~~~D~avlVvda~ 132 (831)
...++|+||||+.++.. .....++.+|++++|+|+.
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~ 112 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDAT 112 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETT
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecc
Confidence 35799999999876422 1224568999999999984
No 188
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.58 E-value=6.5e-08 Score=96.47 Aligned_cols=104 Identities=21% Similarity=0.203 Sum_probs=67.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
...+|+++|+.|+|||||+++|....-.... ...++.......+.+. +..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~----------------~~t~~~~~~~~~i~~~--------------g~~ 77 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES----------------KSTIGVEFATRSIQVD--------------GKT 77 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSC----------------CCCCSEEEEEEEEEET--------------TEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceEEEEEEEEEC--------------CEE
Confidence 4578999999999999999999654321110 0001111111223332 224
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH---------H---hh---hCCCc-EEEEecCcch
Q 003316 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------A---LG---ERIRP-VLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~---------~---~~---~~~~~-ii~iNKiD~~ 151 (831)
..+.++||||+..|...+....+.+|++++|+|... . +. ....| ++++||+|+.
T Consensus 78 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 78 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp EEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 567789999998887666777788999999999764 1 11 12344 4599999986
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.58 E-value=9.2e-08 Score=105.22 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
....|+++|..++|||||+++|+...
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999996543
No 190
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.49 E-value=7.8e-08 Score=103.50 Aligned_cols=99 Identities=11% Similarity=0.186 Sum_probs=64.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCeeE
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (831)
+|.++|..|+|||||+.++. .+..... ...-+.|+......+ . ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~--~~~~~~~-------------~~~~~~Tig~~~~~v--~---------------~~v~L 48 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVF--HNMQPLD-------------TLYLESTSNPSLEHF--S---------------TLIDL 48 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHH--SCCCSGG-------------GTTCCCCCSCCCEEE--C---------------SSSCE
T ss_pred CEEEECCCCCCHHHHHHHHH--cCCCCCc-------------cceecCeeeeeeEEE--c---------------cEEEE
Confidence 37899999999999998652 2211110 001122332222221 1 24689
Q ss_pred EEEeCCCCcchHH---HHHHHhhhcCeEEEEEecHH-------H----hh------hCCCcEEEEecCcch
Q 003316 101 NLIDSPGHVDFSS---EVTAALRITDGALVVVDCIE-------A----LG------ERIRPVLTVNKMDRC 151 (831)
Q Consensus 101 nliDTPGh~df~~---ev~~al~~~D~avlVvda~~-------~----~~------~~~~~ii~iNKiD~~ 151 (831)
+|+||||+.+|.. ....-.+.++++|+|+|+.+ . +. .+.|.++|.||+|+.
T Consensus 49 qIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 49 AVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119 (331)
T ss_dssp EEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred EEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence 9999999999953 34667899999999999875 1 11 123445699999987
No 191
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.45 E-value=2.3e-07 Score=93.45 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=58.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (831)
.-.+|+++|+.|+|||||+++|+.... ... + ....|.|.... .+.+. +
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~-~~~-------~------~~~~G~~~~~~--~~~~~----------------~ 72 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKS-LAR-------T------SKTPGRTQLIN--LFEVA----------------D 72 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEE--EEEEE----------------T
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-ccc-------c------cCCCccceeeE--EEEec----------------C
Confidence 346899999999999999999932110 000 0 01123332211 12222 2
Q ss_pred eeEEEEeCCCCcc----------hHHH---HHHHhhhcCeEEEEEecHH-----------HhhhC-CCcEEEEecCcch
Q 003316 98 YLINLIDSPGHVD----------FSSE---VTAALRITDGALVVVDCIE-----------ALGER-IRPVLTVNKMDRC 151 (831)
Q Consensus 98 ~~inliDTPGh~d----------f~~e---v~~al~~~D~avlVvda~~-----------~~~~~-~~~ii~iNKiD~~ 151 (831)
.+.++||||+.+ |... .....+.+|++++|+|+.. .+... .+.+++.||+|+.
T Consensus 73 -~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 73 -GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp -TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred -CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 578999999854 2222 2223357899999999864 22233 4445589999976
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.40 E-value=3.1e-07 Score=100.55 Aligned_cols=111 Identities=23% Similarity=0.181 Sum_probs=58.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechh-hhhccccccCCCCe
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYRGERQGNEY 98 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 98 (831)
.+|+|+|++|+|||||+++|....-.+.. ..+ .|+......+.++.... .+............
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~-~p~---------------tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN-YPF---------------CTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CC---------------CCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC-CCC---------------ceECceEEEEecCCcccceeeeeecccceeee
Confidence 37999999999999999999764311110 011 12222222223321000 00000000000135
Q ss_pred eEEEEeCCCCcchHH-------HHHHHhhhcCeEEEEEecHHHhhhCCCcEE-EEecCcch
Q 003316 99 LINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEALGERIRPVL-TVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~-------ev~~al~~~D~avlVvda~~~~~~~~~~ii-~iNKiD~~ 151 (831)
.++|+||||..++.. .....++.+|++++|+|+.+ .+.++ +.||+|-.
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~-----~~~v~~v~~~~dp~ 122 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE-----NDDIVHVAGKIDPL 122 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC-----C---------CCHH
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC-----CCceeeecCCcChH
Confidence 799999999988753 24567899999999999875 23333 88888843
No 193
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.36 E-value=8.4e-07 Score=105.51 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=22.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
....|+++|+.++|||||+|+|+..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~ 74 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGR 74 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4679999999999999999999764
No 194
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.34 E-value=8.1e-07 Score=97.43 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=36.1
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----Hhh---hCCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----~~~---~~~~~ii~iNKiD~~ 151 (831)
.++.+.|+||||..+-. ......+|.+++|+|+.. .+. ...+.++++||+|+.
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC------------CCSCSEEEECCCSGG
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCC
Confidence 36789999999964332 233578999999999864 121 124557799999987
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.27 E-value=1.2e-06 Score=97.94 Aligned_cols=101 Identities=22% Similarity=0.245 Sum_probs=63.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCee
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (831)
..|+|+|+.|||||||+++|..... ...++. ..|+......+.+. ....
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~----------~i~~~~------ftTl~p~~G~V~~~---------------~~~~ 206 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP----------KIAPYP------FTTLSPNLGVVEVS---------------EEER 206 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC----------EECCCT------TCSSCCEEEEEECS---------------SSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc----------cccCcc------cceecceeeEEEec---------------Ccce
Confidence 4589999999999999999932211 111111 11222222223332 1367
Q ss_pred EEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecH-H-------------Hhh---hCCCcEEEEecCcch
Q 003316 100 INLIDSPGHVD-------FSSEVTAALRITDGALVVVDCI-E-------------ALG---ERIRPVLTVNKMDRC 151 (831)
Q Consensus 100 inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~-~-------------~~~---~~~~~ii~iNKiD~~ 151 (831)
++++||||+.+ +.....+.+..+|.++.|+|+. . .+. ...|.++++||+|..
T Consensus 207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 99999999854 2234455667899999999985 2 111 235667799999987
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.22 E-value=2.9e-06 Score=88.65 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=37.9
Q ss_pred CeeEEEEeCCCCcchHH------HHHHHhhhcCeEEEEEecHH------Hh-----------hhCCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSS------EVTAALRITDGALVVVDCIE------AL-----------GERIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~------ev~~al~~~D~avlVvda~~------~~-----------~~~~~~ii~iNKiD~~ 151 (831)
.+.+.||||||..++.. .+..++.. +.+|+|+|+.. .. ....|.++|+||+|+.
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLL 184 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccc
Confidence 46899999999987642 23345555 88899999875 11 1145556799999976
No 197
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.21 E-value=8e-07 Score=98.19 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=62.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
-++|+++|.+|+|||||+|+|+.....-.. . ....+ ..|.|..... +.+ +.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~--~--~~~~~------~~gtT~~~~~--~~~-----------------~~ 212 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGN--V--ITTSY------FPGTTLDMIE--IPL-----------------ES 212 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTC--C--CEEEE------CTTSSCEEEE--EEC-----------------ST
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCcc--c--eeecC------CCCeEEeeEE--EEe-----------------CC
Confidence 368999999999999999999876210000 0 00110 1233333221 112 22
Q ss_pred eEEEEeCCCCcchH-------HHHHHHh---hhcCeEEEEEecHH-----------HhhhCCCc-EEEEecCcch
Q 003316 99 LINLIDSPGHVDFS-------SEVTAAL---RITDGALVVVDCIE-----------ALGERIRP-VLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~-------~ev~~al---~~~D~avlVvda~~-----------~~~~~~~~-ii~iNKiD~~ 151 (831)
.++++||||..+.. .+....+ +..|.+++++|+.. .+.....| ++|+||+|..
T Consensus 213 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTV 287 (369)
T ss_dssp TCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred CeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccc
Confidence 47999999975432 2233333 67899999999953 23333344 5599999986
No 198
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.12 E-value=2.4e-06 Score=94.42 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=53.4
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhh-hhccc
Q 003316 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAA-LKSYR 90 (831)
Q Consensus 12 ~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~-~~~~~ 90 (831)
++.....-..|+|+|..|+|||||+++|....- .... ..+.|+......+.+...... +....
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~---------------~p~tTi~p~~g~v~v~~~r~~~l~~~~ 78 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAEN---------------FPFCTIDPNESRVPVPDERFDFLCQYH 78 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccC---------------CCccccCceeEEEEECCccceeecccc
Confidence 444444556799999999999999999954321 1100 012233333333333210000 00000
Q ss_pred cccCCCCeeEEEEeCCCCcchHH-------HHHHHhhhcCeEEEEEecHH
Q 003316 91 GERQGNEYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 91 ~~~~~~~~~inliDTPGh~df~~-------ev~~al~~~D~avlVvda~~ 133 (831)
.........+.++||||...+.. .....++.+|++++|+|+.+
T Consensus 79 ~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 79 KPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred CcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 00000134699999999987654 46778899999999999986
No 199
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.06 E-value=3.2e-06 Score=93.31 Aligned_cols=103 Identities=12% Similarity=0.142 Sum_probs=60.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCc-ccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGII-AQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i-~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
++|+++|.+|+|||||+|+|+...... .+. .... ...|.|..... +.+ +.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~----~~~~------~~~gtT~~~~~--~~~-----------------~~ 211 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENV----ITTS------HFPGTTLDLID--IPL-----------------DE 211 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSC----CEEE------CCC----CEEE--EES-----------------SS
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccc----eecC------CCCCeecceEE--EEe-----------------cC
Confidence 689999999999999999998764211 110 0001 11233433221 122 22
Q ss_pred eEEEEeCCCCcch-------HHHHHHH---hhhcCeEEEEEecHH-----------HhhhCCCc-EEEEecCcch
Q 003316 99 LINLIDSPGHVDF-------SSEVTAA---LRITDGALVVVDCIE-----------ALGERIRP-VLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df-------~~ev~~a---l~~~D~avlVvda~~-----------~~~~~~~~-ii~iNKiD~~ 151 (831)
.+.++||||..+. ..+.... ....+..++++|+.. .+.....| ++|+||+|..
T Consensus 212 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 212 ESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTI 286 (368)
T ss_dssp SCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred CeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccc
Confidence 3889999997543 2222222 356789999999843 23333344 5699999987
No 200
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.04 E-value=2.2e-06 Score=93.54 Aligned_cols=53 Identities=21% Similarity=0.225 Sum_probs=36.5
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH--H---hhh---CCCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--A---LGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~--~---~~~---~~~~ii~iNKiD~~ 151 (831)
.++.+.||||||..+-.. .....+|.+++|+|+.. . +.. ..+-++++||+|+.
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDG 206 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCSTT
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEEchhcc
Confidence 367899999999764322 23478999999998752 1 111 23457788999965
No 201
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.02 E-value=1.5e-06 Score=90.85 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.5
Q ss_pred CeeEEEEEeCC---------CCCHHHHHHHHHH
Q 003316 18 NIRNMSVIAHV---------DHGKSTLTDSLVA 41 (831)
Q Consensus 18 ~irnI~ivGh~---------~~GKTTL~~~ll~ 41 (831)
...+|+++|.. |+|||||+++|+.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 35689999999 9999999999965
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.01 E-value=8.1e-06 Score=89.78 Aligned_cols=109 Identities=19% Similarity=0.202 Sum_probs=56.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeech--hhhhccccccC---
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD--AALKSYRGERQ--- 94 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~--~~~~~~~~~~~--- 94 (831)
.+|+|+|++|+|||||+++|......+.. ..+ .|+........++... ...+.... .+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~-~p~---------------~Ti~pn~g~~~v~~~~l~~~~~~~~~-~~~~~ 64 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAAN-YPF---------------ATIDKNVGVVPLEDERLYALQRTFAK-GERVP 64 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSS-CCG---------------GGGSTTEEEEECCCHHHHHHHHHHCB-TTBCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccC-CCC---------------ceeccceeeEecChHHHHHHHHHhcc-ccccc
Confidence 46899999999999999999876421111 011 0111111111111000 00000000 00
Q ss_pred -CCCeeEEEEeCCCCcch-------HHHHHHHhhhcCeEEEEEecHHHhhhCCCc-EEEEecCcc
Q 003316 95 -GNEYLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEALGERIRP-VLTVNKMDR 150 (831)
Q Consensus 95 -~~~~~inliDTPGh~df-------~~ev~~al~~~D~avlVvda~~~~~~~~~~-ii~iNKiD~ 150 (831)
.....+.|+||||...+ .......++.+|++++|+|+.+ ... +.+.||.|-
T Consensus 65 ~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~-----~~~~~~v~~~~dp 124 (368)
T 2dby_A 65 PVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP-----DPDVVHVMGRVDP 124 (368)
T ss_dssp CEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC-----CH-----------
T ss_pred ccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC-----CCceeEeecccCh
Confidence 02457999999999875 2456678899999999999875 112 337788874
No 203
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.97 E-value=9.2e-06 Score=91.33 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=38.1
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHh---h---hcCeEEEEEecHH---------HhhhCC-C-cEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAAL---R---ITDGALVVVDCIE---------ALGERI-R-PVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al---~---~~D~avlVvda~~---------~~~~~~-~-~ii~iNKiD~~ 151 (831)
.++.+.||||||......+....+ . .+|.+++|+|+.. .+.... + ..+++||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhcccCCeEEEEeCCCCc
Confidence 467899999999776433332222 2 5899999999976 223334 5 35699999965
No 204
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.93 E-value=1e-05 Score=90.94 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=68.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCc-eEEecCch-----h------hheeceeeeeceeEEEEeechhh
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRMTDTRQ-----D------EAERGITIKSTGISLYYEMTDAA 85 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~-~~~~D~~~-----~------e~~rgiTi~~~~~~~~~~~~~~~ 85 (831)
..++|+++|+.|+||||++..|.+....- .|. +...|.++ . ....|+.+...... .++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~----~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~----~dp~~ 170 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK----HKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVG----QKPVD 170 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT----SCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSS----SCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh----cCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCC----CCHHH
Confidence 36899999999999999999997554211 011 11111111 0 11223332221100 00000
Q ss_pred h-hccccccCCCCeeEEEEeCCCCcchHHHHHHH------hhhcCeEEEEEecHH---------HhhhCCC-cEEEEecC
Q 003316 86 L-KSYRGERQGNEYLINLIDSPGHVDFSSEVTAA------LRITDGALVVVDCIE---------ALGERIR-PVLTVNKM 148 (831)
Q Consensus 86 ~-~~~~~~~~~~~~~inliDTPGh~df~~ev~~a------l~~~D~avlVvda~~---------~~~~~~~-~ii~iNKi 148 (831)
+ ...-......++.+.||||||...+...+..+ +..+|.+++|+|+.. .+....+ .-+++||+
T Consensus 171 i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l~i~gvVlnK~ 250 (433)
T 2xxa_A 171 IVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKV 250 (433)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHSCCCCEEEECT
T ss_pred HHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccCCCeEEEEecC
Confidence 0 00000011136789999999987665444443 336789999999986 1222344 34799999
Q ss_pred cch
Q 003316 149 DRC 151 (831)
Q Consensus 149 D~~ 151 (831)
|..
T Consensus 251 D~~ 253 (433)
T 2xxa_A 251 DGD 253 (433)
T ss_dssp TSS
T ss_pred CCC
Confidence 964
No 205
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.90 E-value=2.1e-05 Score=87.08 Aligned_cols=107 Identities=13% Similarity=0.074 Sum_probs=61.1
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechh-hhhccc
Q 003316 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYR 90 (831)
Q Consensus 12 ~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~-~~~~~~ 90 (831)
++.....-..|+|+|+.|+|||||+++|............+ .|+......+.+..... .+....
T Consensus 13 ~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~---------------tTi~p~~G~v~v~~~r~~~l~~~~ 77 (392)
T 1ni3_A 13 QWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPY---------------ATIDPEEAKVAVPDERFDWLCEAY 77 (392)
T ss_dssp CCSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSS---------------CCCCTTEEEEEECCHHHHHHHHHH
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCc---------------eeecceeeeeeeCCcchhhhhhhc
Confidence 34444555789999999999999999997643211111111 22222222233321000 000000
Q ss_pred cccCCCCeeEEEEeCCCCcc-------hHHHHHHHhhhcCeEEEEEecHH
Q 003316 91 GERQGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 91 ~~~~~~~~~inliDTPGh~d-------f~~ev~~al~~~D~avlVvda~~ 133 (831)
.........+.++||||... +.......++.+|+++.|+|+.+
T Consensus 78 ~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 78 KPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00000124689999999654 34467788899999999999875
No 206
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.88 E-value=7.6e-05 Score=78.58 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
-|++|+|+.|+|||||++.|....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999997654
No 207
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.84 E-value=4.2e-05 Score=85.25 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..+-|++|+|+.|+|||||++.|+..
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34567999999999999999999544
No 208
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.82 E-value=4.8e-05 Score=85.04 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~ 41 (831)
-+|+|+|+.|+|||||+++|+.
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHhC
Confidence 4689999999999999999943
No 209
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.78 E-value=3e-05 Score=78.90 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=24.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.++++|+|+|+.|+|||||+++|+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467999999999999999999998764
No 210
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.75 E-value=8.7e-05 Score=83.08 Aligned_cols=125 Identities=17% Similarity=0.094 Sum_probs=65.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCc-eE--EecCc-h--------hhheeceeeeeceeEEEEeechhhh
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VR--MTDTR-Q--------DEAERGITIKSTGISLYYEMTDAAL 86 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~-~~--~~D~~-~--------~e~~rgiTi~~~~~~~~~~~~~~~~ 86 (831)
.+.|+++|..|+||||++..|...... .|. +. ..|.. + .-...|+.+..... ...+...+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~-----~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~---~~dp~~i~ 171 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK-----RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQ---EKDAIKLA 171 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-----TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTT---CCCHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH-----CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCC---CCCHHHHH
Confidence 578999999999999999999754321 121 11 12211 0 01112332211100 00000000
Q ss_pred hccccccCCCCeeEEEEeCCCCcc----hHHHHHH--HhhhcCeEEEEEecHH---------HhhhCCCc-EEEEecCcc
Q 003316 87 KSYRGERQGNEYLINLIDSPGHVD----FSSEVTA--ALRITDGALVVVDCIE---------ALGERIRP-VLTVNKMDR 150 (831)
Q Consensus 87 ~~~~~~~~~~~~~inliDTPGh~d----f~~ev~~--al~~~D~avlVvda~~---------~~~~~~~~-ii~iNKiD~ 150 (831)
...-......++.+.||||||... ...++.. ....+|.++||+||.. .+.+..++ .+++||+|.
T Consensus 172 ~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 172 KEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred HHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 000000111357899999999543 3333322 2335799999999986 23344555 469999996
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 252 ~ 252 (443)
T 3dm5_A 252 S 252 (443)
T ss_dssp C
T ss_pred c
Confidence 5
No 211
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.75 E-value=4.2e-05 Score=85.60 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=39.4
Q ss_pred CCeeEEEEeCCCCcc------hHHHHHHHhh--hcCeEEEEEecHH---------HhhhCCCc-EEEEecCcch
Q 003316 96 NEYLINLIDSPGHVD------FSSEVTAALR--ITDGALVVVDCIE---------ALGERIRP-VLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~d------f~~ev~~al~--~~D~avlVvda~~---------~~~~~~~~-ii~iNKiD~~ 151 (831)
.++.+.||||||... +..++....+ ..|.++||+|+.. .+.+..++ .+++||+|..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcccCCcEEEEeccccc
Confidence 367889999999644 5556554333 3599999999986 22333344 5699999965
No 212
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.67 E-value=0.00012 Score=78.51 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll 40 (831)
-+|+++|+.|+|||||+++|.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 578999999999999999984
No 213
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.64 E-value=8.8e-05 Score=79.19 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=67.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCch-----hh------heeceeeeeceeEEEEeechhhh-
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQ-----DE------AERGITIKSTGISLYYEMTDAAL- 86 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~-----~e------~~rgiTi~~~~~~~~~~~~~~~~- 86 (831)
.+.|+++|+.|+||||++..|......- -+++...|... .+ ...|+.+..... ..++..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~----g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~----~~~p~~~~ 169 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK----GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPG----EKDVVGIA 169 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT----TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTT----CCCHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCC----CCCHHHHH
Confidence 4688999999999999999996543110 12222222221 01 112333222100 0000000
Q ss_pred hccccccCCCCeeEEEEeCCCCcc--hHHHHH------HHhhhcCeEEEEEecHH---------HhhhCCCc-EEEEecC
Q 003316 87 KSYRGERQGNEYLINLIDSPGHVD--FSSEVT------AALRITDGALVVVDCIE---------ALGERIRP-VLTVNKM 148 (831)
Q Consensus 87 ~~~~~~~~~~~~~inliDTPGh~d--f~~ev~------~al~~~D~avlVvda~~---------~~~~~~~~-ii~iNKi 148 (831)
...-......++.+.||||||... ....+. .++..+|.+++|+|+.. .+.+..+. .+++||+
T Consensus 170 ~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~i~gvVlnk~ 249 (297)
T 1j8m_F 170 KRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKM 249 (297)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTCTTEEEEEECG
T ss_pred HHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 000000111367899999999776 432222 34557999999999976 22334453 4699999
Q ss_pred cch
Q 003316 149 DRC 151 (831)
Q Consensus 149 D~~ 151 (831)
|..
T Consensus 250 D~~ 252 (297)
T 1j8m_F 250 DGT 252 (297)
T ss_dssp GGC
T ss_pred CCC
Confidence 965
No 214
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.36 E-value=0.00018 Score=83.48 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=29.5
Q ss_pred ccHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 4 FTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 4 ~~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
++.+-+.-+..-..++..|+|+|.+++|||||+|+|+...
T Consensus 23 ~~~eal~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 23 ANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp ECHHHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred ECHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3444444444444667889999999999999999996543
No 215
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.32 E-value=0.00022 Score=71.74 Aligned_cols=84 Identities=17% Similarity=0.271 Sum_probs=61.0
Q ss_pred CCCeEEEEEEeecCCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEE
Q 003316 361 EGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 440 (831)
Q Consensus 361 ~~pl~a~VfK~~~~~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIv 440 (831)
++||.+.|..++. ..|. +..+||.+|++++||.|.++..+ . ..+|+.|... ..++++|.|||.+
T Consensus 4 ~~p~rl~v~~v~~--g~G~-v~~G~v~~G~i~~Gd~v~i~P~~----~-----~~~V~~I~~~----~~~~~~A~aGd~V 67 (204)
T 3e1y_E 4 GSPIRLPIVDKYK--DMGT-VVLGKLESGSICKGQQLVMMPNK----H-----NVEVLGILSD----DVETDTVAPGENL 67 (204)
T ss_dssp ---CBEEEEEEEE--SSSE-EEEEECCBSCEESSCCEEETTTT----E-----EEEEEEECSS----SSCBSEECTTSEE
T ss_pred CCCEEEEEEEEEc--CCCE-EEEEEEecCEEECCCEEEECCCC----C-----EEEEEEEEEC----CEEeEEECCCCEE
Confidence 5788887777654 3465 89999999999999999987432 1 2688888643 3578999999999
Q ss_pred EE--eccccccccce-eeecCCC
Q 003316 441 AM--VGLDQYITKNA-TLTNEKE 460 (831)
Q Consensus 441 ai--~gl~~~~~~tg-Tl~~~~~ 460 (831)
++ .|++......| +|+++..
T Consensus 68 ~l~L~gi~~~di~rG~vl~~~~~ 90 (204)
T 3e1y_E 68 KIRLKGIEEEEILPGFILCDPNN 90 (204)
T ss_dssp EEEEEESSSSCCCTTCEEBCSSS
T ss_pred EEEEcCCCHHHCccceEEECCCC
Confidence 98 67765444677 8887654
No 216
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.22 E-value=0.00058 Score=73.62 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.+.|+++|..|+||||++..|...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998654
No 217
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.09 E-value=0.00043 Score=73.31 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
+..+|+++|.+|+|||||+|+|+...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34679999999999999999996543
No 218
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.91 E-value=0.0019 Score=69.74 Aligned_cols=126 Identities=15% Similarity=0.152 Sum_probs=64.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEE--ecC---chhh------heeceeeeeceeEEEEeechhhhh
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRM--TDT---RQDE------AERGITIKSTGISLYYEMTDAALK 87 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~--~D~---~~~e------~~rgiTi~~~~~~~~~~~~~~~~~ 87 (831)
-..|+++|+.|+|||||+..|..... . ..|++.. .|. ...| +..|+.+......+ ........
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~---~-~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~--~p~~~v~e 202 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLK---N-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGA--DPAAVAYD 202 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH---H-TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTC--CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---h-cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccC--CHHHHHHH
Confidence 46899999999999999999965421 1 1233222 121 1111 12233221110000 00000000
Q ss_pred ccccccCCCCeeEEEEeCCCCc----chHHHHHHHh--hhcCeEEEEEecHH---------Hhh-hCCCcEEEEecCcch
Q 003316 88 SYRGERQGNEYLINLIDSPGHV----DFSSEVTAAL--RITDGALVVVDCIE---------ALG-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 88 ~~~~~~~~~~~~inliDTPGh~----df~~ev~~al--~~~D~avlVvda~~---------~~~-~~~~~ii~iNKiD~~ 151 (831)
..... ...++.+.++||+|.. .+..++.... -..|-.++|+|+.. .+. ....-++++||+|-.
T Consensus 203 ~l~~~-~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 203 AIQHA-KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp HHHHH-HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred HHHHH-HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 00000 0023456789999964 3444433222 24799999999886 222 234557899999954
No 219
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.82 E-value=0.00056 Score=71.60 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.+|+++|..|+|||||+++|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 58999999999999999999643
No 220
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.82 E-value=0.0016 Score=73.54 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..|+|+|..|+|||||+..|...
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHH
Confidence 57999999999999999999654
No 221
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.81 E-value=0.0032 Score=67.31 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=27.1
Q ss_pred HHHHHHhhccc-------CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 6 AEELRRIMDFK-------HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 6 ~~~~~~~~~~~-------~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.+.|.+++... ...+.|+++|+.|+||||++..|...
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 84 KEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp HHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 34556666532 23467999999999999999999654
No 222
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.79 E-value=0.0012 Score=72.02 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=34.0
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
+..+.++||+|+..|..-.....+.+|++|+|+|.++
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~ 228 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGG
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECcc
Confidence 6789999999999998888888899999999999875
No 223
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.71 E-value=0.0011 Score=70.53 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+-+.|+++|+.|+||||++..|...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999643
No 224
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.71 E-value=0.0026 Score=74.69 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=20.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~ 41 (831)
.+..|+|+|+.|||||||+++|..
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHS
T ss_pred cCCeEEEECCCCChHHHHHHHHhC
Confidence 346699999999999999999953
No 225
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.70 E-value=0.0064 Score=68.18 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=32.6
Q ss_pred cccHHHHHHhhcc----cCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 3 KFTAEELRRIMDF----KHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 3 ~~~~~~~~~~~~~----~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.++.+-+.+++.. ..++..|+|+|..++|||||+|+|+.+
T Consensus 47 ~v~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 47 ELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EECHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred EECHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4566777666653 356889999999999999999999976
No 226
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.61 E-value=0.0015 Score=70.32 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=32.5
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI 132 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~ 132 (831)
+..+.++||.|+..|..-.....+.++++|+|+|.+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls 201 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 201 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGG
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECc
Confidence 678999999999999888888889999999999765
No 227
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.59 E-value=0.0024 Score=71.03 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=57.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEecCchhhheeceeeeeceeEEEEeechhhhhccccccCCCCe
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~e~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (831)
.-.|+|+|+.|+|||||+++|.. .+... .|+.. .+..+..+ +++ .+. .....
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G---l~~p~-~GsI~-~~g~~~t~-~~~---------v~q-------------~~~~~ 120 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG---IGNEE-EGAAK-TGVVEVTM-ERH---------PYK-------------HPNIP 120 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT---CCTTS-TTSCC-CCC----C-CCE---------EEE-------------CSSCT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC---CCCcc-CceEE-ECCeecce-eEE---------ecc-------------ccccC
Confidence 34899999999999999999965 22111 23211 11111111 111 121 00122
Q ss_pred eEEEEeCCCCcc---hHHHHHHH--hhhcCeEEEEEecH--H--------Hhhh-CCCcEEEEecCcchhh
Q 003316 99 LINLIDSPGHVD---FSSEVTAA--LRITDGALVVVDCI--E--------ALGE-RIRPVLTVNKMDRCFL 153 (831)
Q Consensus 99 ~inliDTPGh~d---f~~ev~~a--l~~~D~avlVvda~--~--------~~~~-~~~~ii~iNKiD~~~~ 153 (831)
.++++|+||... -..+.... +...|..++ +++. . ++.. +.|.++++||.|..+.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllL 190 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDIT 190 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCccccc
Confidence 688999999642 12233332 233455554 7875 2 3333 4455669999998764
No 228
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.57 E-value=0.002 Score=71.90 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=64.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCceEEe--cCc-h--hhh------eeceeeeeceeEEEEeechhhh-
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMT--DTR-Q--DEA------ERGITIKSTGISLYYEMTDAAL- 86 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~--D~~-~--~e~------~rgiTi~~~~~~~~~~~~~~~~- 86 (831)
.+.|+++|+.|+||||++..|......- -+++... |.. + .++ ..|+.+..... ..++..+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~----g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~----~~~p~~i~ 169 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK----GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD----GESPESIR 169 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCT----TCCHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEeeccccCchhHHHHHHhcccCCccEEecCC----CCCHHHHH
Confidence 4689999999999999999996553211 1222221 211 1 111 11222211100 0001001
Q ss_pred hccccccCCCCeeEEEEeCCCCcch----HHHHHH--HhhhcCeEEEEEecHH---------HhhhCCC-cEEEEecCcc
Q 003316 87 KSYRGERQGNEYLINLIDSPGHVDF----SSEVTA--ALRITDGALVVVDCIE---------ALGERIR-PVLTVNKMDR 150 (831)
Q Consensus 87 ~~~~~~~~~~~~~inliDTPGh~df----~~ev~~--al~~~D~avlVvda~~---------~~~~~~~-~ii~iNKiD~ 150 (831)
...-.......+.+.||||||.... ..++.. .+..+|.+++|+|+.. .+.+..+ .-+++||+|.
T Consensus 170 ~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 170 RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDG 249 (425)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTCCCEEEEESGGG
T ss_pred HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCCceEEEEeCcCC
Confidence 0000011113678999999996543 333222 2235899999999976 1222333 3569999996
Q ss_pred h
Q 003316 151 C 151 (831)
Q Consensus 151 ~ 151 (831)
.
T Consensus 250 ~ 250 (425)
T 2ffh_A 250 D 250 (425)
T ss_dssp C
T ss_pred c
Confidence 4
No 229
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.56 E-value=0.0013 Score=72.06 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=27.0
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
+..+.++||+|+..|........+.++++|+|+|.++
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTC
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECcc
Confidence 6789999999999998887788899999999999874
No 230
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.53 E-value=0.002 Score=68.89 Aligned_cols=24 Identities=25% Similarity=0.113 Sum_probs=21.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-..|+|+|+.|+|||||+..|...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999999654
No 231
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.53 E-value=0.0015 Score=70.70 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=33.9
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI 132 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~ 132 (831)
+..+.++||+|+..|..-.....+.++++|+|+|.+
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS 195 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLA 195 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGG
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECC
Confidence 678999999999999998888899999999999998
No 232
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.42 E-value=0.012 Score=59.11 Aligned_cols=53 Identities=15% Similarity=0.067 Sum_probs=39.9
Q ss_pred CeeEEEEeCCCC-cchHHHHHHHhhhcCeEEEEEecHH-----------Hhhh--CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGH-VDFSSEVTAALRITDGALVVVDCIE-----------ALGE--RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh-~df~~ev~~al~~~D~avlVvda~~-----------~~~~--~~~~ii~iNKiD~~ 151 (831)
.+.+.|||||+. .+. .+..++..+|.+|+++.... .+.+ +.+..+++|+.|..
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 678999999997 443 45678899999999998876 2333 34445699999865
No 233
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.19 E-value=0.0051 Score=61.04 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=38.6
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH----------Hhhh------CCCcEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------ALGE------RIRPVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~----------~~~~------~~~~ii~iNKiD~~ 151 (831)
.|.+.|||||+.. ...+..++..+|.+|+|+.... .+.+ ..+..+++|++|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5789999999976 4566788999999999987543 2221 12335699999854
No 234
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.17 E-value=0.0027 Score=70.33 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=33.8
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
+..+.|+||+|+..|..-.....+.++++|+|+|.++
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ 252 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSS 252 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTG
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcc
Confidence 5789999999999999888888899999999999874
No 235
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.13 E-value=0.0055 Score=65.15 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=35.4
Q ss_pred CeeEEEEeCCCCcch----HHHHHHHhh--hcCeEEEEEecHH---------HhhhCCC-cEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIE---------ALGERIR-PVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df----~~ev~~al~--~~D~avlVvda~~---------~~~~~~~-~ii~iNKiD~~ 151 (831)
++.+.||||||.... ..++....+ .+|.+++|+|+.. .+....+ .-+++||+|..
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGD 250 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEEEECGGGC
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 578999999986433 223222222 5899999999874 1222233 34699999965
No 236
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=95.99 E-value=0.015 Score=56.90 Aligned_cols=110 Identities=21% Similarity=0.231 Sum_probs=91.7
Q ss_pred CCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeee
Q 003316 667 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEE 746 (831)
Q Consensus 667 g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~ 746 (831)
+.-+.||.+.+.-+- .-...+++-++.|-..|.++|+..++.+-..|...+.|+++-..+|+|...|.+.. .|.+.
T Consensus 80 ~~~l~nv~vVVtRyf---GGi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~ 155 (191)
T 2cve_A 80 AQGLDRVAVLVVRYF---GGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEE 155 (191)
T ss_dssp HTTBCSEEEEEEEEC---CSSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEE
T ss_pred HcCCCcEEEEEEEEe---CCcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceecc
Confidence 567888888776431 12234555566788899999999999999999999999999999999999999988 88887
Q ss_pred eccCCCCc-EEEEEEechhhhcCchHHHhhhCCCCcee
Q 003316 747 MQRPGTPL-YNIKAYLPVVESFGFSSTLRAATSGQAFP 783 (831)
Q Consensus 747 ~~~~g~~~-~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 783 (831)
+..+ . +.+...+|..+.-.|...|+.+|+|++.+
T Consensus 156 ~y~~---~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 156 TYTP---EGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EEET---TEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EEcC---CeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 7643 4 88999999999999999999999999754
No 237
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=95.95 E-value=0.011 Score=59.17 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=93.4
Q ss_pred CCCceeeEEEEEeecccccccccCCCchHHHHHHHHHHHHHhcCCeeeecEEEEEEEecCcccccHHHHhhhccceEeee
Q 003316 667 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEE 746 (831)
Q Consensus 667 g~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~ 746 (831)
+.-+.||.|.+.-+- .-...+++-++.|-..|.++|+.+|+.+-..|...+.|.++-..+|+|...|.+..+.|++.
T Consensus 92 ~~~l~nv~vVVtRyf---GGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~ 168 (217)
T 1vi7_A 92 GSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINS 168 (217)
T ss_dssp HHTCCSEEEECCEEC---CSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEE
T ss_pred HcCCCCEEEEEEEEe---CCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEce
Confidence 456778877775331 12344555566788899999999999999999999999999999999999999999999988
Q ss_pred eccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeE
Q 003316 747 MQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQ 784 (831)
Q Consensus 747 ~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 784 (831)
+..+ .+.+...+|..+.-.|...|+.+|+|++.+.
T Consensus 169 ~y~~---~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~~ 203 (217)
T 1vi7_A 169 DYQA---FVLLRVALPAAKVAEFSAKLADFSRGSLQLL 203 (217)
T ss_dssp EESS---SEEEEEEECSSTHHHHHHHHHHHHTTCCCCE
T ss_pred EecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 8643 5888999999999999999999999998653
No 238
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.50 E-value=0.0048 Score=67.33 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=31.8
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecH
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI 132 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~ 132 (831)
+...+.++||+|+..|..-.....+.+|++|+|+|.+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis 217 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGG
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECc
Confidence 3678999999999999888888889999999999987
No 239
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.71 E-value=0.043 Score=58.25 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=28.6
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
..|.+.|||||+..... .+..++..+|.+|+|+....
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~ 191 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDF 191 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSH
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcH
Confidence 46889999999865432 23457889999999998876
No 240
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.67 E-value=0.024 Score=59.72 Aligned_cols=49 Identities=27% Similarity=0.326 Sum_probs=36.0
Q ss_pred EeCCCCc-chHHHHHHHhhhcCeEEEEEecHH----------HhhhCCCcEEEEecCcch
Q 003316 103 IDSPGHV-DFSSEVTAALRITDGALVVVDCIE----------ALGERIRPVLTVNKMDRC 151 (831)
Q Consensus 103 iDTPGh~-df~~ev~~al~~~D~avlVvda~~----------~~~~~~~~ii~iNKiD~~ 151 (831)
=+-|||. ....++...+..+|+++.|+||.. .+..++|.++++||+|+.
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~ 63 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKA 63 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGS
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccC
Confidence 3569997 577889999999999999999987 122345667799999987
No 241
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.47 E-value=0.086 Score=56.43 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.++..++|+|..|||||||++.|+..
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhh
Confidence 35788999999999999999999865
No 242
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.37 E-value=0.015 Score=61.97 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll 40 (831)
..++|+|+.|+|||||+++|+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHhc
Confidence 578999999999999999994
No 243
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.56 E-value=0.14 Score=57.03 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=32.0
Q ss_pred cccHHHHHHhhcc----cCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 3 KFTAEELRRIMDF----KHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 3 ~~~~~~~~~~~~~----~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.++.+-+..++.. ...+..|+|+|..++|||+|+|.|+..
T Consensus 47 ~ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~ 90 (457)
T 4ido_A 47 ELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (457)
T ss_dssp EECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHH
T ss_pred EECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHHH
Confidence 4567777776653 356899999999999999999988754
No 244
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.46 E-value=0.013 Score=62.38 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=40.7
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH----------H---hh-hCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------A---LG-ERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~----------~---~~-~~~~~ii~iNKiD~~ 151 (831)
.+.++|| +..|..-....++.+|++|+|+|+.+ . +. .+.|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 6889999 88887666778899999999999985 1 11 245667799999986
No 245
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.14 E-value=0.11 Score=56.79 Aligned_cols=52 Identities=19% Similarity=0.100 Sum_probs=33.7
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-------Hh---hhCCCcEEEEecCcch
Q 003316 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------AL---GERIRPVLTVNKMDRC 151 (831)
Q Consensus 99 ~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-------~~---~~~~~~ii~iNKiD~~ 151 (831)
.+.-+|+| +.+|...+....+.+|++|+|+|+.+ .+ ...+|.++|+||+|+.
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl 111 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLL 111 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGS
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcC
Confidence 34455655 77888877777789999999999998 11 1244556699999987
No 246
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.78 E-value=0.11 Score=55.12 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll 40 (831)
..++++|+.|+|||||+++|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 247
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.58 E-value=0.065 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+++|+|+.|+|||||++.|....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976654
No 248
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=92.40 E-value=0.11 Score=43.07 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=53.8
Q ss_pred EEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCcee
Q 003316 719 LVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFP 783 (831)
Q Consensus 719 ~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 783 (831)
...++++-..+|+|...|.+..+.|.+.+-.+ .+.+...+|..+.-.|...|+.+|+|++.+
T Consensus 9 ~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~---~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 9 EYTLQANWFDITGILWLLGQVDGKIINSDVQA---FVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCEEEEEEEEE---EEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred eEEEEEcccCHHHHHHHHHHCCCEEEcccccC---eEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 45788899999999999999999999988743 689999999999999999999999999854
No 249
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.36 E-value=0.072 Score=51.77 Aligned_cols=24 Identities=8% Similarity=0.380 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
+.++|+|+.|||||||++.|+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999997653
No 250
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.25 E-value=0.062 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.++|+|+.|||||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999764
No 251
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.10 E-value=0.086 Score=51.35 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~ 41 (831)
..-..|+|+|+.|||||||++.|..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHh
Confidence 3446799999999999999999943
No 252
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.90 E-value=0.069 Score=55.54 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=32.9
Q ss_pred CCCcchH-HHHHHHhhhcCeEEEEEecHH-Hhh---h----CCCcEEEEecCcch
Q 003316 106 PGHVDFS-SEVTAALRITDGALVVVDCIE-ALG---E----RIRPVLTVNKMDRC 151 (831)
Q Consensus 106 PGh~df~-~ev~~al~~~D~avlVvda~~-~~~---~----~~~~ii~iNKiD~~ 151 (831)
|||.... .++...+..+|.++.|+||.. ... . ++++++++||+|+.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~ll~k~~iivlNK~DL~ 59 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSRKETIILLNKVDIA 59 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSCCTTSEEEEEEECGGGS
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHHhcCCCcEEEEECccCC
Confidence 8997654 588899999999999999997 110 1 45667799999987
No 253
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.88 E-value=0.069 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
+.++|+|+.|||||||++.|+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999997653
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.67 E-value=0.15 Score=50.69 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..-..|+|+|+.|||||||++.|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999443
No 255
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.61 E-value=0.13 Score=49.44 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=22.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.-..|+|+|+.|||||||+..|....|
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 346899999999999999999866544
No 256
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.39 E-value=0.12 Score=51.02 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=23.3
Q ss_pred HHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHcCC
Q 003316 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (831)
Q Consensus 9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~ 45 (831)
++.+|.. ..-..|+|+|..|||||||++.|....|.
T Consensus 20 ~~~~m~~-~~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 20 FQSMMTG-EPTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred HHhhhcC-CCCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3445543 23468999999999999999999665443
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.35 E-value=0.1 Score=51.41 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
..|+|+|+.|||||||++.|....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 469999999999999999997653
No 258
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=91.34 E-value=0.28 Score=53.64 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=34.1
Q ss_pred CcchHHHHHHHhhhcCeEEEEEecHH-------Hhhh---CCCcEEEEecCcch
Q 003316 108 HVDFSSEVTAALRITDGALVVVDCIE-------ALGE---RIRPVLTVNKMDRC 151 (831)
Q Consensus 108 h~df~~ev~~al~~~D~avlVvda~~-------~~~~---~~~~ii~iNKiD~~ 151 (831)
..+|...+....+.+|++++|+|+.+ .+.+ ++|.++|+||+|+.
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~ 109 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLI 109 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGS
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcC
Confidence 46788777777788899999999987 2222 45556799999986
No 259
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.29 E-value=0.1 Score=55.32 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll 40 (831)
..++++|+.|+|||||+++|.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHS
T ss_pred CeEEEECCCCCcHHHHHHHhc
Confidence 468999999999999999994
No 260
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.13 E-value=0.11 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
-..++|+|+.|||||||++.|....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999996553
No 261
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.96 E-value=0.12 Score=49.36 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.-..++++|+.|||||||++.|...-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33579999999999999999996654
No 262
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.80 E-value=0.14 Score=49.42 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.++.|+|+|+.|+|||||+++|+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999654
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.70 E-value=0.14 Score=48.67 Aligned_cols=25 Identities=16% Similarity=-0.080 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+.|+|.|..||||||+++.|....|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999965544
No 264
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.66 E-value=0.16 Score=50.44 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.-..|+|+|+.|||||||++.|...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999654
No 265
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.65 E-value=0.13 Score=49.02 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.+|+|+|..|||||||+..|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999965544
No 266
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.53 E-value=0.16 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
..|+|+|..||||||+++.| ...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 47999999999999999999 5544
No 267
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.49 E-value=0.2 Score=49.15 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.+..+|+|.|..||||||+++.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999998654
No 268
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.49 E-value=0.13 Score=51.70 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
..++|+|+.|||||||++.|....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 568999999999999999997653
No 269
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.48 E-value=0.15 Score=50.47 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.-+.|+|+|+.|+|||||+++|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34679999999999999999998764
No 270
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.35 E-value=0.17 Score=51.64 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=23.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i 46 (831)
...|+|+|+.|||||||++.|...-|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3589999999999999999997655654
No 271
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.32 E-value=0.15 Score=50.69 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
-+.|+|+|+.|+|||||++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4579999999999999999997654
No 272
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.23 E-value=0.19 Score=52.27 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 38 e~~~liG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLL 57 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 45899999999999999999
No 273
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.11 E-value=0.16 Score=51.17 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
-+.++|+|+.|||||||++.|+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3679999999999999999997654
No 274
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.08 E-value=0.14 Score=49.21 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=18.2
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
.-++++|+.|||||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999985
No 275
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.04 E-value=0.19 Score=48.77 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
++.++|+|+.|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999999764
No 276
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.97 E-value=0.21 Score=48.55 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.+.|+|.|..||||||++..|....|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999965544
No 277
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.84 E-value=0.098 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..|+|+|+.|+|||||++.|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999543
No 278
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.77 E-value=0.18 Score=49.71 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.+.|+|+|..|||||||++.|....|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999976644
No 279
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.76 E-value=0.24 Score=50.73 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=23.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCcccccCCce
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDV 54 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~g~~ 54 (831)
..++|+|+.|||||||++.| +|.+... .|+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l---~Gl~~p~-~G~i 59 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLL---ERFYQPT-AGEI 59 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHH---TTSSCCS-BSCE
T ss_pred CEEEEECCCCCCHHHHHHHH---hcCCCCC-CcEE
Confidence 46899999999999999999 4444332 4543
No 280
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.69 E-value=0.18 Score=49.55 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..|+|+|+.|||||||++.|...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999998654
No 281
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.55 E-value=0.22 Score=48.40 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~ 41 (831)
..|+++|+.|||||||++.|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999964
No 282
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.37 E-value=0.18 Score=51.03 Aligned_cols=20 Identities=40% Similarity=0.391 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 31 e~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 283
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.32 E-value=0.18 Score=49.48 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
|-|+|+|+.|+|||||+++|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998764
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.30 E-value=0.23 Score=48.83 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
..++|+|+|..||||||+...|....|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999976544
No 285
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.29 E-value=0.19 Score=49.46 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~ 41 (831)
.+|+|+|..||||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999955
No 286
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.26 E-value=0.17 Score=51.66 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 32 e~~~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999999
No 287
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.92 E-value=0.22 Score=49.23 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~ 41 (831)
.+|+|+|..||||||+++.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998843
No 288
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.85 E-value=0.24 Score=48.95 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.1
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHH
Q 003316 16 KHNIRNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~ 41 (831)
......|+|+|..|||||||++.|..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999999944
No 289
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.80 E-value=0.2 Score=48.36 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-++++++|+.|+|||||+.++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999543
No 290
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.80 E-value=0.27 Score=49.47 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+...|+|.|..||||||++..|....|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999976544
No 291
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.73 E-value=0.21 Score=51.01 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
-..|||+|+.|||||||++.|...-|
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999966544
No 292
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.73 E-value=0.26 Score=47.62 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.++|.++|..||||||+...|....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999966544
No 293
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.67 E-value=0.21 Score=49.90 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..++|+|+.|||||||++.|...
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999654
No 294
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.61 E-value=0.24 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..-..++|+|+.|||||||++.|+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 34468999999999999999999653
No 295
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.51 E-value=0.31 Score=52.94 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=24.9
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 8 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 8 ~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.++++...+. ..|+|+|+.|||||||+++|+..
T Consensus 114 ~l~~l~~~~~--g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 114 VFKRVSDVPR--GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp HHHHHHHCSS--EEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCC--CEEEEECCCCCCHHHHHHHHHhc
Confidence 4455544332 38999999999999999999654
No 296
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.41 E-value=0.27 Score=49.14 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.+|+|+|+.||||||+++.|...-|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999966544
No 297
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=88.30 E-value=1.4 Score=39.28 Aligned_cols=48 Identities=25% Similarity=0.355 Sum_probs=35.3
Q ss_pred eEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe
Q 003316 381 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 443 (831)
Q Consensus 381 l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~ 443 (831)
...+||.+|+|++|+.| . + +. ...+|..|.. ..+++++|.|||-|++.
T Consensus 50 vivGrVe~G~LK~G~~V--P--g----~~---~vg~VkSIE~----~~e~v~eA~~GdnVai~ 97 (116)
T 1xe1_A 50 VIIGTVESGMIGVGFKV--K--G----PS---GIGGIVRIER----NREKVEFAIAGDRIGIS 97 (116)
T ss_dssp EEEEEEEEEEEETTCEE--E--C----SS---CEEEEEEEEE----TTEEESEEETTCEEEEE
T ss_pred eeEEEEeEEEEcCCCCc--C--C----Cc---eEEEEEEEEE----CCcCcCCcCCCCEEEEE
Confidence 77889999999999999 2 1 10 0135555543 45679999999999875
No 298
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.27 E-value=0.23 Score=49.06 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
-+.|+|+|+.|||||||++.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999997664
No 299
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.26 E-value=0.35 Score=47.48 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.+.+.|+|.|..||||||++..|....|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999976654
No 300
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.23 E-value=0.26 Score=50.41 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 25 e~~~liG~nGsGKSTLl~~l 44 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELI 44 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 67899999999999999998
No 301
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.14 E-value=0.24 Score=50.21 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 35 e~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.08 E-value=0.27 Score=47.01 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~ 41 (831)
+.|.|.|..||||||++..|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999965
No 303
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.06 E-value=0.22 Score=51.45 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 34 e~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 304
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.03 E-value=0.27 Score=48.27 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.++|+|+.|+|||||+..|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998654
No 305
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.03 E-value=0.23 Score=51.56 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 33 e~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 306
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.02 E-value=0.32 Score=51.77 Aligned_cols=26 Identities=31% Similarity=0.146 Sum_probs=22.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..-..|||+|+.|||||||++.|...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44568999999999999999999543
No 307
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.99 E-value=0.087 Score=55.99 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=31.7
Q ss_pred CcchHHHHHHHhhhcCeEEEEEecHH----------H----hhhCCCcEEEEecCcch
Q 003316 108 HVDFSSEVTAALRITDGALVVVDCIE----------A----LGERIRPVLTVNKMDRC 151 (831)
Q Consensus 108 h~df~~ev~~al~~~D~avlVvda~~----------~----~~~~~~~ii~iNKiD~~ 151 (831)
++.|..-....++.+|++++|+|+.+ . ...+.|+++|+||+|+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 44444334456889999999999985 1 12356778899999986
No 308
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.96 E-value=0.23 Score=51.93 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
-.++|+|+.|||||||++.|
T Consensus 35 e~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 309
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=87.92 E-value=0.3 Score=47.26 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.|+|.|..|+||||+++.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999654
No 310
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.89 E-value=0.25 Score=50.39 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 32 e~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 311
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.89 E-value=0.49 Score=49.83 Aligned_cols=26 Identities=12% Similarity=-0.078 Sum_probs=22.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.+...|+|+|+.|||||||++.|...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999988543
No 312
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.86 E-value=0.24 Score=49.70 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=18.0
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~l 39 (831)
.++|+|+.|||||||++.|
T Consensus 37 ~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 313
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.83 E-value=0.48 Score=48.38 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=24.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~ 45 (831)
.+..+|+|.|.+||||||++..|....|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45578999999999999999999765553
No 314
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=87.83 E-value=0.97 Score=47.18 Aligned_cols=35 Identities=26% Similarity=0.136 Sum_probs=29.8
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
.|.+.|||||+.. ...+..++..+|.+|+|+....
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 5789999999975 4567889999999999998765
No 315
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.77 E-value=0.36 Score=51.22 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..-..++|+|+.|+|||||++.|+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 44568999999999999999999654
No 316
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.74 E-value=0.18 Score=49.30 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+.|+|.|..||||||++..|....|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999976544
No 317
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.72 E-value=0.24 Score=50.60 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 33 e~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 318
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.71 E-value=0.27 Score=50.54 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll 40 (831)
..++|+|+.|||||||++.|.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999993
No 319
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.52 E-value=0.27 Score=50.49 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 36 e~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 320
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.52 E-value=0.2 Score=50.61 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=15.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll 40 (831)
..|+|+|+.|||||||++.|.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999996
No 321
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.47 E-value=0.35 Score=47.21 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+|+|.|..||||||++..|...-+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999966544
No 322
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.29 E-value=0.28 Score=50.77 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 47 e~~~i~G~nGsGKSTLl~~l 66 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLL 66 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 323
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=87.24 E-value=0.43 Score=47.07 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~ 41 (831)
.....|+|+|..|||||||++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999854
No 324
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.24 E-value=0.29 Score=50.79 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 51 ei~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHH
Confidence 46899999999999999998
No 325
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.17 E-value=0.37 Score=47.82 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGI 45 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~ 45 (831)
+|+|.|.+||||||+++.|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999665553
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.17 E-value=0.39 Score=47.72 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGI 45 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~ 45 (831)
+|+|.|.+||||||+++.|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999766553
No 327
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.16 E-value=0.34 Score=46.66 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
..+|+|+.|+|||||+++|.+.-+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999977644
No 328
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.10 E-value=0.41 Score=46.16 Aligned_cols=26 Identities=19% Similarity=0.228 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
-.+|++.|..||||||++..|....|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999965544
No 329
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.10 E-value=0.28 Score=50.47 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 27 e~~~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARM 46 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 36899999999999999999
No 330
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.06 E-value=0.57 Score=44.65 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
...+++.|.|+.|+|||||+.++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999654
No 331
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.04 E-value=0.3 Score=50.43 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 42 ei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 332
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.00 E-value=0.32 Score=49.23 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=19.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll 40 (831)
-..++|+|+.|||||||+..|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3578999999999999999986
No 333
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.00 E-value=0.42 Score=46.32 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+..+|+++|..||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998655
No 334
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.99 E-value=0.3 Score=50.80 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll 40 (831)
..++|+|+.|||||||++.|.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999993
No 335
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.95 E-value=0.3 Score=45.92 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.-.+++|+|+.|+|||||+.++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999654
No 336
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=86.82 E-value=0.34 Score=46.41 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
++|+|+|..||||||+...|....|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3799999999999999999965544
No 337
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=86.82 E-value=0.4 Score=45.82 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+.|.+.|..||||||+...|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999966543
No 338
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=86.73 E-value=0.35 Score=48.25 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=27.0
Q ss_pred HHHHHHhhc-ccCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 6 AEELRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 6 ~~~~~~~~~-~~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
...+.+++. --..-..++|+|+.|||||||+..|...
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 445556663 2233457899999999999999999653
No 339
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.72 E-value=0.29 Score=50.81 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 34 e~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999998
No 340
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.66 E-value=0.58 Score=45.97 Aligned_cols=25 Identities=28% Similarity=0.126 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.-..|+|+|..|||||||...|...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998544
No 341
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.58 E-value=0.33 Score=50.84 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 48 e~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 35899999999999999999
No 342
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.57 E-value=0.39 Score=51.31 Aligned_cols=26 Identities=27% Similarity=0.167 Sum_probs=21.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
....|||+|+.|||||||++.|....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999995543
No 343
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.55 E-value=0.3 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.+++|+|+.|||||||+++|+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999543
No 344
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.51 E-value=0.45 Score=45.99 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+.|+|.|..||||||++..|....|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999966544
No 345
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.50 E-value=0.27 Score=56.12 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~ 41 (831)
.+|+|+|+.|||||||+++|+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999944
No 346
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=86.46 E-value=0.35 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..++|+|+.|+|||||+++|+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 46899999999999999999643
No 347
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.43 E-value=0.31 Score=50.21 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 32 e~~~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 348
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.41 E-value=0.34 Score=50.53 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 46 e~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 349
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=86.35 E-value=0.5 Score=45.74 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
-+.|.+.|..||||||++..|....|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999966544
No 350
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=86.21 E-value=0.45 Score=48.87 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~ 45 (831)
-..|+|+|+.|||||||+..|...-|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 358999999999999999999655453
No 351
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.14 E-value=0.38 Score=46.43 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.|+|.|..||||||+++.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999554
No 352
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=86.06 E-value=1.5 Score=44.75 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=29.1
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
..|.+.|||||+.... .+..++..+|.+|+|+....
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~ 145 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY 145 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch
Confidence 5788999999997654 34577889999999998764
No 353
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.05 E-value=0.44 Score=45.79 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
..++|.|.|..|+||||++..|....|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999965543
No 354
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=86.03 E-value=0.66 Score=49.10 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..++++|+.|+|||||+..|...
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999654
No 355
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.03 E-value=0.49 Score=50.16 Aligned_cols=26 Identities=31% Similarity=0.197 Sum_probs=22.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..-..|||+|+.|||||||++.|...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999654
No 356
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.01 E-value=0.38 Score=45.15 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHc
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
-.+|+|+.|+|||||+++|.+..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999997643
No 357
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=85.95 E-value=0.37 Score=47.54 Aligned_cols=24 Identities=25% Similarity=0.102 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-+.|+|.|..||||||+++.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999544
No 358
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.86 E-value=0.5 Score=48.39 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=23.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+...|+|.|..||||||+++.|...-|
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999866545
No 359
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.77 E-value=0.59 Score=46.96 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=25.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcCCc
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i 46 (831)
.+.+.|.|+|++||||+|.+..|...-|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 456889999999999999999998776654
No 360
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.71 E-value=0.66 Score=45.40 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+++.|.|++|+|||||+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999999998654
No 361
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.49 E-value=0.29 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~ 41 (831)
.+++|+|+.|||||||++.|+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999943
No 362
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=85.48 E-value=0.51 Score=44.74 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=21.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
...||+|.|..||||||+...|-..-|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356999999999999999998865544
No 363
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.36 E-value=0.55 Score=48.29 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+.|+|+|..|||||||+..|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999976544
No 364
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.36 E-value=0.58 Score=45.09 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+.|+|.|..||||||++..|....|
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999966544
No 365
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=85.28 E-value=0.45 Score=52.00 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-.+|+|+|+.|||||||++.|+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999654
No 366
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.21 E-value=0.66 Score=51.46 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=26.0
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 8 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 8 ~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.+++++. ..-..|+|+|+.|||||||+++|+..-
T Consensus 158 ~L~~l~~--~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 4555543 334579999999999999999997653
No 367
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.16 E-value=0.72 Score=46.02 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..+++.|.|+.|+|||||+.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999554
No 368
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.15 E-value=0.44 Score=50.15 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 65 e~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999998
No 369
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.04 E-value=0.44 Score=49.42 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~l 39 (831)
.++|+|+.|||||||++.|
T Consensus 32 ~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 370
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=84.92 E-value=0.58 Score=49.67 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=28.6
Q ss_pred HHhhhcCeEEEEEecHH----------Hh----hhCCCcEEEEecCcch
Q 003316 117 AALRITDGALVVVDCIE----------AL----GERIRPVLTVNKMDRC 151 (831)
Q Consensus 117 ~al~~~D~avlVvda~~----------~~----~~~~~~ii~iNKiD~~ 151 (831)
.++..+|.+++|+|+.. .+ ..+++|+|++||+|+.
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~ 130 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLI 130 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccC
Confidence 36788999999999985 12 3567888999999987
No 371
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=84.79 E-value=0.6 Score=45.85 Aligned_cols=25 Identities=16% Similarity=-0.017 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+.|+|.|..||||||+++.|...-+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999966543
No 372
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.79 E-value=0.81 Score=49.65 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..|+++|+.|+|||||+..|...
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhh
Confidence 57999999999999999999654
No 373
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.67 E-value=0.48 Score=46.37 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.|+|.|..||||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999998543
No 374
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.63 E-value=0.67 Score=46.06 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=26.8
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 7 EELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 7 ~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..++.+.....+-+++.+.|++|+||||++.+|...
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 345555554333457999999999999999999665
No 375
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.53 E-value=0.6 Score=45.14 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+-..|+++|..|+||||++..|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998544
No 376
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=84.50 E-value=0.61 Score=46.47 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
..+|++.|..||||||++..|....|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999966544
No 377
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=84.39 E-value=0.51 Score=45.66 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~ 41 (831)
.|+|.|..||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999954
No 378
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=84.37 E-value=0.47 Score=51.59 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll 40 (831)
..++|+|+.|||||||++.|.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHh
Confidence 458999999999999999993
No 379
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=84.31 E-value=0.5 Score=45.31 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=17.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
...|.|.|..||||||+++.|....|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999965543
No 380
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.30 E-value=0.29 Score=48.35 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.|+|.|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999654
No 381
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=84.22 E-value=1.6 Score=44.36 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=54.0
Q ss_pred cEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeE
Q 003316 716 PVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQ 784 (831)
Q Consensus 716 Pi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 784 (831)
--|++.|++|.++.+++++.|.+ -|.|..++-.++ +.+.+.+.+|-----.+...|++.|+|+|...
T Consensus 183 a~m~l~v~ip~~~~~~~~~~l~~-~~~v~~ee~~~d-gs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~ 249 (252)
T 2wbm_A 183 EKVRVAIKIPGEMAGSAYGVISN-FGKITNEEWQND-GSWIAVVEIPGGLQDSFYQKLSELTGGNVETR 249 (252)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHH-HCEEEEEEECTT-SCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEE
T ss_pred eeEEEEEEEcHHHHHHHHHHHHh-hCeeeeecccCC-CcEEEEEEECCccHHHHHHHHHHhcCCeEEEE
Confidence 45889999999999999999954 588887775432 45677889998866678899999999999754
No 382
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=84.21 E-value=0.65 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+|+|.|..||||||++..|-...|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999966544
No 383
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.05 E-value=0.63 Score=46.30 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCcc
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~ 47 (831)
+|.|+|++||||+|.+..|...-|..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ 28 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH 28 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 588999999999999999987766543
No 384
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=83.94 E-value=0.49 Score=51.31 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
-.++|+|+.|||||||++.|
T Consensus 31 e~~~llGpsGsGKSTLLr~i 50 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCL 50 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHH
Confidence 35899999999999999999
No 385
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.91 E-value=0.73 Score=43.81 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
...+++.|.|+.|+|||||+.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999654
No 386
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=83.88 E-value=0.69 Score=45.92 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+|+|.|..||||||++..|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976544
No 387
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=83.85 E-value=0.75 Score=45.07 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
-..|+|.|..|+||||++..|....|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999966544
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=83.77 E-value=0.6 Score=44.81 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-..|++.|..||||||++..|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998543
No 389
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=83.75 E-value=0.34 Score=51.42 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 81 e~vaivG~sGsGKSTLl~ll 100 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLL 100 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHH
Confidence 46899999999999999998
No 390
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=83.72 E-value=0.52 Score=45.40 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+|+|.|.+||||||++..|....|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999966544
No 391
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.72 E-value=0.65 Score=48.38 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
+.++++|+.|+|||||+++|....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 569999999999999999996543
No 392
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=83.71 E-value=0.5 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
...++|+|+.|||||||++.|...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999655
No 393
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.64 E-value=0.68 Score=48.40 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll 40 (831)
+...|+|.|..||||||+++.|-
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999985
No 394
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.64 E-value=0.57 Score=44.46 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+.|+|.|..||||||++..|-...|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999965544
No 395
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=83.53 E-value=0.64 Score=45.80 Aligned_cols=24 Identities=29% Similarity=0.155 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-+.|+|.|..||||||+++.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999543
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=83.43 E-value=0.68 Score=46.03 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~ 41 (831)
..|+|.|..||||||+++.|-.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998843
No 397
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=83.28 E-value=0.98 Score=44.70 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=26.0
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 8 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 8 ~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.+.+.+.....-+.+.|.|+.|+|||||+.++....
T Consensus 34 ~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 34 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 444444433333578999999999999999996543
No 398
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=83.19 E-value=1.5 Score=45.07 Aligned_cols=55 Identities=22% Similarity=0.046 Sum_probs=37.3
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCcE-EEEecCcc
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALGE-RIRPV-LTVNKMDR 150 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~i-i~iNKiD~ 150 (831)
..|.+.|||||+..........++..+|.+|+|+.... .+.+ +.+.+ +++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 46889999999976543333334457999999988665 2223 33444 69999984
No 399
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.11 E-value=0.92 Score=44.54 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=23.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
....+|+|.|.+||||||+.+.|-...|
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3467899999999999999998865434
No 400
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=83.06 E-value=0.74 Score=45.74 Aligned_cols=37 Identities=8% Similarity=0.110 Sum_probs=27.1
Q ss_pred HHHHHHhhc-ccCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 6 AEELRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 6 ~~~~~~~~~-~~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
...+.+++. .-..-..++|+|+.|+|||||+..|...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 455666664 2233357899999999999999999643
No 401
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.06 E-value=0.71 Score=47.12 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
+.++++|+.|+|||||+.++....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999996553
No 402
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=82.99 E-value=1 Score=48.57 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..+.+|+++|..|+||||+...|...
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999999988554
No 403
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=82.96 E-value=0.57 Score=50.77 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 42 e~~~llGpnGsGKSTLLr~i 61 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLI 61 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 36899999999999999998
No 404
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=82.94 E-value=0.69 Score=46.15 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=22.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
..+|+|+|..||||||++..|...-+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999976654
No 405
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=82.81 E-value=0.55 Score=50.97 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 30 e~~~llGpnGsGKSTLLr~i 49 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLML 49 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHH
Confidence 46899999999999999999
No 406
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.69 E-value=0.64 Score=47.79 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
-.+|+|+|..|+||||+...|....|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999966544
No 407
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.55 E-value=0.57 Score=47.24 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=20.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~ 41 (831)
+-..|+|.|..|||||||++.|..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999998843
No 408
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=82.51 E-value=0.58 Score=50.84 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 30 e~~~llGpnGsGKSTLLr~i 49 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTI 49 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHH
Confidence 46899999999999999998
No 409
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=82.41 E-value=0.65 Score=50.57 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-.+|+|+.|||||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999654
No 410
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=82.21 E-value=0.61 Score=51.00 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
-.++|+|+.|||||||++.|
T Consensus 30 e~~~llGpsGsGKSTLLr~i 49 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMI 49 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHH
Confidence 36899999999999999999
No 411
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=82.11 E-value=0.62 Score=50.85 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 38 e~~~llGpnGsGKSTLLr~i 57 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMI 57 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHH
Confidence 46899999999999999998
No 412
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=82.07 E-value=0.9 Score=45.77 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=23.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
....+|+|.|..|+||||++..|...-+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999966544
No 413
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=82.05 E-value=0.61 Score=50.91 Aligned_cols=20 Identities=20% Similarity=0.234 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 30 e~~~llGpnGsGKSTLLr~i 49 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMI 49 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHH
Confidence 35899999999999999998
No 414
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=82.00 E-value=1.6 Score=43.71 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=39.8
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCc-EEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALGE-RIRP-VLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~-ii~iNKiD~~ 151 (831)
..|.+.|||||+... ..+..++..+|.+|+|+.... .+.+ +.+. -+++||.|..
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 467899999998655 566788999999999998765 2223 2333 3599999864
No 415
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=81.96 E-value=1.1 Score=46.55 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=23.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
...+++.|.|++|+|||||+.++....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345789999999999999999996553
No 416
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=81.89 E-value=0.98 Score=46.47 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
...|.++|..||||||++..|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999654
No 417
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=81.87 E-value=0.82 Score=44.32 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.|+|.|..||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999544
No 418
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=81.76 E-value=0.99 Score=47.30 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.-+.|.++|..|||||||+..|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997654
No 419
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=81.47 E-value=0.89 Score=46.57 Aligned_cols=27 Identities=11% Similarity=0.003 Sum_probs=23.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
....|.++|..||||||++..|....+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999976643
No 420
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.35 E-value=1.2 Score=43.93 Aligned_cols=36 Identities=17% Similarity=0.006 Sum_probs=27.6
Q ss_pred HHHHHHhhc-ccCCeeEEEEEeCCCCCHHHHHHHHHH
Q 003316 6 AEELRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 6 ~~~~~~~~~-~~~~irnI~ivGh~~~GKTTL~~~ll~ 41 (831)
...|.+++. .-..-..++|+|+.|+|||||+..|..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455666664 334445789999999999999999966
No 421
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.21 E-value=0.92 Score=47.06 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
+.|+|+|+.|+|||||+.+|....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 469999999999999999996553
No 422
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=81.20 E-value=2.1 Score=43.24 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=54.0
Q ss_pred cEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEE
Q 003316 716 PVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 785 (831)
Q Consensus 716 Pi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 785 (831)
--|++.|.+|.++.+++++.|. .-|.|..++-.++ +.+...+.+|-----.+.+.|++.|+|+|.+..
T Consensus 168 a~m~~~v~vp~~~~~~~~~~l~-~~~~v~~ee~~~d-gs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 168 EEMEIAIKIPPEHTGRAISALY-NFGGVTREEWQRD-GSWICVMRIPSGMYGDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp CEEEEEEEECGGGHHHHHHHHH-HHCCEEEEEECTT-SCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEEEEcHHHHHHHHHHHH-hhCeeeeecccCC-CcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 3578999999999999999994 4578887775432 456678899987666778999999999997643
No 423
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=81.09 E-value=1 Score=45.49 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=23.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.....|+|+|..|+||||+.+.|...-|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4456899999999999999999866544
No 424
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=80.77 E-value=0.8 Score=50.30 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
-.++|+|+.|||||||++.|
T Consensus 48 e~~~llGpsGsGKSTLLr~i 67 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAF 67 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHH
Confidence 36899999999999999998
No 425
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=80.77 E-value=1.4 Score=48.22 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..-+.|+|+|+.|+|||||+..|...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44568999999999999999999654
No 426
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=80.67 E-value=2.6 Score=45.82 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=28.5
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
..+.+.|||||.. ....+..++..||.+|+|+....
T Consensus 258 ~~yD~VIID~p~~--~~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPFS--LEIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCCC--CCHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCCC--CCHHHHHHHHHCCEEEEEecCCc
Confidence 3678999999953 44567788999999999987654
No 427
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.65 E-value=1.2 Score=46.84 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=22.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
...+.|.+.|++|+|||||+.++....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 345789999999999999999996654
No 428
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=80.63 E-value=1.8 Score=43.99 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=29.7
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
.|.+.|||||+... ..+..++..+|.+|+|++...
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~ 147 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEV 147 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCCh
Confidence 67899999998654 467788999999999999876
No 429
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=80.63 E-value=1.7 Score=44.36 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=39.4
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCcE-EEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALGE-RIRPV-LTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~i-i~iNKiD~~ 151 (831)
.|.+.|||||+... ..+..++..+|.+|+|+.... .+.+ +.+++ +++|+.|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 57899999998655 567788999999999998765 2222 33333 599999854
No 430
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=80.56 E-value=0.84 Score=51.32 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-..++|+|+.|||||||++.|...
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 356999999999999999999654
No 431
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=80.51 E-value=1.1 Score=45.01 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+|+|.|..||||||+++.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999966544
No 432
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=80.37 E-value=0.53 Score=50.92 Aligned_cols=20 Identities=10% Similarity=0.307 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 27 e~~~llGpnGsGKSTLLr~i 46 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELI 46 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHH
Confidence 46899999999999999998
No 433
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=80.31 E-value=1.2 Score=44.90 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=39.0
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhh-hCCCc-EEEEecCcc
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALG-ERIRP-VLTVNKMDR 150 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~-~~~~~-ii~iNKiD~ 150 (831)
..|.+.|||||+..+. .+..++..+|.+|+|++... .+. .+.+. .+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4688999999986654 45678899999999999876 111 23343 459999983
No 434
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=80.02 E-value=1 Score=45.95 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.++|.+.|++|+|||||+.++....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999996543
No 435
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.94 E-value=1.2 Score=47.95 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+.|+|+|++++|||||+..|...-+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999976644
No 436
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=79.93 E-value=0.97 Score=44.75 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=20.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~ 41 (831)
.-..|+|+|..|+||||++..|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999854
No 437
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=79.81 E-value=1.1 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.|+|.|..||||||+++.|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999966544
No 438
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=79.81 E-value=1.4 Score=46.11 Aligned_cols=34 Identities=15% Similarity=0.003 Sum_probs=24.7
Q ss_pred HHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.++...-..-..++|+|+.|+|||||+..|...
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3444433334457899999999999999998544
No 439
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=79.76 E-value=1.2 Score=44.29 Aligned_cols=25 Identities=24% Similarity=0.330 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.+|+|.|..||||||++..|....|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999966544
No 440
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=79.52 E-value=1.2 Score=45.28 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
..|+|.|+.|+||||+++.|....|
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999965544
No 441
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=79.51 E-value=1.4 Score=46.63 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=23.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
...+-|+|+|++++|||||+..|....+
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 3346789999999999999999976643
No 442
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=79.13 E-value=1.2 Score=44.71 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=27.8
Q ss_pred HHHHHHhhc-ccCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 6 AEELRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 6 ~~~~~~~~~-~~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
...|.+++. --..-..++|+|+.|+|||||+..|...
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 455666664 2233457899999999999999999654
No 443
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=79.08 E-value=2.7 Score=44.23 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
..++|.|.|+.|+|||||+.++....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 44789999999999999999995543
No 444
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=78.87 E-value=1.1 Score=44.33 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
.-.+|+|+.|+||||++++|.+..+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3458999999999999999976543
No 445
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=78.81 E-value=1.6 Score=45.69 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=38.4
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------Hhhh-CCCc-EEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALGE-RIRP-VLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~~-~~~~-ii~iNKiD~~ 151 (831)
.|.+.|||||+..... +.....+.+|++|+|+.+.. .+.. +.+. -+|+||+|.-
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 4679999999976553 34556678999999998875 2333 3333 3599999854
No 446
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=78.68 E-value=1 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
..++|+|+.|||||||+++|...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 67899999999999999999654
No 447
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=78.56 E-value=1.2 Score=47.97 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
-.++|+|+.|+|||||++.|....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999997764
No 448
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=78.53 E-value=0.52 Score=51.07 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 32 e~~~llGpnGsGKSTLLr~i 51 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRII 51 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999998
No 449
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=78.42 E-value=1 Score=48.18 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
..+++++|+.|+|||||+.++....+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 46799999999999999999976654
No 450
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=78.25 E-value=1.6 Score=47.03 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=22.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
...+++.|.|+.|+|||||+.++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44678999999999999999998654
No 451
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=78.24 E-value=5 Score=42.52 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.+.|.+.|++|+|||+|+.++....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4789999999999999999996553
No 452
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=78.01 E-value=1.6 Score=44.81 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=38.8
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------HhhhC---CCcEEEEecCcch
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALGER---IRPVLTVNKMDRC 151 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~~~---~~~ii~iNKiD~~ 151 (831)
..|.+.|||||+..+ ..+..++..+|.+|+|+.... .+.+. .+..+|+|+.++.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 467899999999654 346778889999999998765 22222 2335699999644
No 453
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=77.54 E-value=0.75 Score=48.35 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=17.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~ 41 (831)
...|+|.|..||||||+++.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999954
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=77.50 E-value=1.5 Score=46.66 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
+.|+|+|++|+|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999976644
No 455
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=77.46 E-value=1.5 Score=46.47 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=26.9
Q ss_pred HHHHhhcccC-CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 8 ELRRIMDFKH-NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 8 ~~~~~~~~~~-~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.+..+...+. ...++.|.|++|+|||||+.++...
T Consensus 25 ~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 25 VVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp HHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4455555543 4578999999999999999999554
No 456
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=77.38 E-value=1.2 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-.+|+|+.|+|||||++++.+.
T Consensus 25 ~~~i~G~NGsGKS~lleAi~~~ 46 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAILVG 46 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999998654
No 457
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.31 E-value=1.3 Score=47.52 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~ 41 (831)
.+..++.|.|+.|+|||||+.+|..
T Consensus 34 ~~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 34 RDLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp TCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4455599999999999999999976
No 458
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=77.06 E-value=2.3 Score=44.12 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=37.2
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------HhhhCCCc-E-EEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALGERIRP-V-LTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~~~~~~-i-i~iNKiD~~ 151 (831)
.+.+.|||||+..... +....++.+|++|+|+.+.. .+.....+ + +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 5689999999976543 33445578999999998875 23333333 3 589999865
No 459
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=76.86 E-value=1.8 Score=43.57 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=22.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
..-..|+|.|..||||||+++.|...-
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999996554
No 460
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=76.76 E-value=1.4 Score=44.03 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=17.3
Q ss_pred eEEEEeCCC------CcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 99 LINLIDSPG------HVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 99 ~inliDTPG------h~df~~ev~~al~~~D~avlVvda~~ 133 (831)
++..--+|| +..+..-...-...+|++|+|||+.+
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD 137 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEA 137 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBT
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 445556674 44444445666788999999999987
No 461
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=76.48 E-value=2.3 Score=41.40 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=24.6
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 8 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 8 ~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.+.+.+.. ...+++.|.|+.|+|||||+.++...
T Consensus 28 ~l~~~l~~-~~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 28 RLKGYVER-KNIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHT-TCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34444443 23456999999999999999999554
No 462
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=76.06 E-value=1.3 Score=51.35 Aligned_cols=20 Identities=20% Similarity=0.499 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l 389 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLI 389 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 463
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=75.92 E-value=3.5 Score=42.93 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=28.7
Q ss_pred CCeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH
Q 003316 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (831)
Q Consensus 96 ~~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~ 133 (831)
..|.+.|||||+..... ...++..+|.+|+|+.+..
T Consensus 153 ~~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~ 188 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEE 188 (298)
T ss_dssp GGCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGG
T ss_pred cCCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcH
Confidence 35789999999976543 4567778999999998876
No 464
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=75.59 E-value=1.3 Score=51.33 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll 40 (831)
..++|+|+.|||||||++.|.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999993
No 465
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=75.57 E-value=1.3 Score=50.77 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll 40 (831)
..++|+|+.|||||||++.|.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999993
No 466
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=75.53 E-value=1.5 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+.|.|.|..||||||+++.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999653
No 467
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=75.24 E-value=1.6 Score=45.17 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~ 41 (831)
..++|+|+.|+|||||+..|..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999965
No 468
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=75.03 E-value=1.5 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~l 39 (831)
.-..+||+|+.|||||||++.|
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL 45 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKIL 45 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3457899999999999999999
No 469
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=74.81 E-value=1.8 Score=48.35 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
--.++|+|+.|+|||||++.|....
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3469999999999999999997664
No 470
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=74.70 E-value=2.7 Score=43.89 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
....++.|.|++|+|||+|+.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999987544
No 471
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=74.47 E-value=9.4 Score=42.44 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
..+.|.+.|++|+|||+|+.++....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999996553
No 472
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.17 E-value=1.9 Score=43.78 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.++|.+.|++|+|||+|+.++....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999996543
No 473
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=74.12 E-value=2.7 Score=42.16 Aligned_cols=53 Identities=17% Similarity=0.031 Sum_probs=39.0
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCeEEEEEecHH-----------HhhhCC---C-cEEEEecCcch
Q 003316 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------ALGERI---R-PVLTVNKMDRC 151 (831)
Q Consensus 97 ~~~inliDTPGh~df~~ev~~al~~~D~avlVvda~~-----------~~~~~~---~-~ii~iNKiD~~ 151 (831)
.|.+.|||||+..+. .+..++..+|.+|+|+.... .+.+.. . .-+++|+.|..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 578999999997643 45678999999999998876 222222 2 34699999854
No 474
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=73.75 E-value=0.98 Score=46.04 Aligned_cols=67 Identities=9% Similarity=-0.032 Sum_probs=56.5
Q ss_pred cEEEEEEEecCcccccHHHHhhhccceEeeeeccCCCCcEEEEEEechhhhcCchHHHhhhCCCCceeEE
Q 003316 716 PVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 785 (831)
Q Consensus 716 Pi~~~eI~~p~~~~g~v~~~L~~Rrg~I~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 785 (831)
.-|++.|++|.++.|++++.|.+-.|.|.+++-.+ + +.+.+.+|-----.+.+.|+..|.|.|...+
T Consensus 172 a~m~l~v~vp~~~~~~~~~~l~~~~~~v~~ee~~~--~-~~~v~~I~pg~~~~~~~~v~~~tkG~~~~ev 238 (252)
T 2kdo_A 172 AHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQ--Q-LEIVCLIDPGCFREIDELIKKETKGKGSLEV 238 (252)
T ss_dssp ECCCEEEECBHHHHHHHTTTHHHHTCEEEEECCSS--B-CCEEECCCGGGHHHHHHHHHHHTTTTSEEEE
T ss_pred eeEEEEEEEcHHHHHHHHHHHHHhhCcceeeeccC--C-eEEEEEECCcchHHHHHHHHHhcCCCEEEEE
Confidence 35788999999999999999999889998877554 3 6778899988777888999999999997544
No 475
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=73.74 E-value=1.5 Score=50.97 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll 40 (831)
..+||+|+.|+|||||++.|.
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~ 124 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILA 124 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 468999999999999999993
No 476
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=73.68 E-value=7 Score=33.75 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=45.0
Q ss_pred CCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeeeEEEEecCceeeeccccCCCEEEEe
Q 003316 375 SDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 443 (831)
Q Consensus 375 ~~~g~~l~~~RV~sGtL~~g~~l~v~~~n~~~~~~~~~~~ekv~~L~~~~g~~~~~v~~a~AGdIvai~ 443 (831)
+..|. +|=|+|.+|+++++..++++.. ..-+++-++..|. +...+|+++.+|.=|+|.
T Consensus 18 sk~g~-IAGc~V~~G~i~r~~~vRv~Rd------~~vI~eG~i~SLk----r~KddV~EV~~G~ECGi~ 75 (99)
T 1d1n_A 18 SKVGT-IAGCYVTDGKITRDSKVRLIRQ------GIVVYEGEIDSLK----RYKDDVREVAQGYECGLT 75 (99)
T ss_dssp SSSCC-CEEEEECSSBCCSSSEEEEECS------SSEEEEEECSEEE----CSSSCCSCCBTTCEEEEE
T ss_pred CCceE-EEEEEEEcCEEEcCCeEEEEEC------CEEEEEeEEhhhc----ccccccceECCCcEEEEE
Confidence 45566 9999999999999999999752 2234455777776 356679999999999986
No 477
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=73.63 E-value=1.3 Score=51.43 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l 390 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLL 390 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 478
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=73.59 E-value=2.3 Score=48.93 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+-.+|+|+|..|||||||.++|...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3468999999999999999999554
No 479
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=73.58 E-value=1.9 Score=44.88 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=22.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
..++|.+.|++|+|||||+.++....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 35799999999999999999996543
No 480
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=73.51 E-value=1.7 Score=49.90 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll 40 (831)
..++|+|+.|||||||++.|.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~ 333 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLA 333 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999993
No 481
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=73.50 E-value=2 Score=43.32 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
+.|+|.|..|+||||+++.|...-
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 579999999999999999996653
No 482
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=73.49 E-value=1.2 Score=45.83 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll 40 (831)
+.+.|+|.|..|+||||+++.|.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999883
No 483
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.41 E-value=1.6 Score=46.50 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
..+|+|+.|+|||||+++|.+-.|
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred cEEEECCCCCcHHHHHHHHHHHhC
Confidence 568999999999999999977644
No 484
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=73.40 E-value=1.5 Score=50.25 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=18.1
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~l 39 (831)
.++|+|+.|||||||++.|
T Consensus 296 i~~i~G~nGsGKSTLl~~l 314 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARIL 314 (538)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 485
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=73.20 E-value=1.4 Score=51.17 Aligned_cols=20 Identities=20% Similarity=0.499 Sum_probs=18.8
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 382 ~~~~ivG~sGsGKSTll~~l 401 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLL 401 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 47899999999999999998
No 486
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=73.10 E-value=3.5 Score=42.27 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=22.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
...+++.+.|++|+|||+|+.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45689999999999999999999655
No 487
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=72.86 E-value=2.6 Score=44.17 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=23.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHcC
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g 44 (831)
...+.+.+.|++|+|||+|+.++....|
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457888899999999999999966643
No 488
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=72.78 E-value=2.3 Score=45.76 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=22.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
...+++.|.|+.|+|||||+.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999654
No 489
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=72.38 E-value=1.8 Score=50.49 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSL 39 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~l 39 (831)
..++|+|+.|||||||++.|
T Consensus 118 e~~~LiG~NGsGKSTLlkiL 137 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKIL 137 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHH
Confidence 47899999999999999999
No 490
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=72.32 E-value=2.4 Score=42.49 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=20.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
-..++|+|+.|+|||||+..++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999998887543
No 491
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=72.27 E-value=2.2 Score=42.10 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+-|+|+|++|+|||||+-.|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999544
No 492
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=72.15 E-value=3.1 Score=43.99 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=25.6
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 8 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 8 ~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.+..+.. -.. +.+.|.|..|+|||||+..+....
T Consensus 21 el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 21 EIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 3344444 333 799999999999999999997654
No 493
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=72.08 E-value=2 Score=46.61 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll~ 41 (831)
..+|+|+.|+|||||++++.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 578999999999999999965
No 494
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=71.83 E-value=3.7 Score=43.50 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
.++|.+.|++|+|||+|+.++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 478999999999999999999655
No 495
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=71.49 E-value=2.7 Score=46.87 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=25.5
Q ss_pred HHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHH
Q 003316 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (831)
Q Consensus 9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (831)
+..+...+....++.|.|++|+|||||+.++...
T Consensus 120 ~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 120 ALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp HHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3444444433678999999999999999999543
No 496
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=71.47 E-value=2 Score=50.04 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q 003316 21 NMSVIAHVDHGKSTLTDSLV 40 (831)
Q Consensus 21 nI~ivGh~~~GKTTL~~~ll 40 (831)
.++|+|+.|+|||||++.|.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~ 403 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLA 403 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999993
No 497
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=71.45 E-value=2.6 Score=38.83 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=20.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHH
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~ 41 (831)
.-.+|.|.|..|+|||+|+.++-.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998843
No 498
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=71.34 E-value=2.2 Score=47.38 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCC
Q 003316 20 RNMSVIAHVDHGKSTLTDSLVAAAGI 45 (831)
Q Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~ 45 (831)
..++|+|+.|+|||||++++.+..+.
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 46789999999999999999876543
No 499
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=71.32 E-value=3.6 Score=44.38 Aligned_cols=26 Identities=8% Similarity=0.225 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
..++|.|.|++|+|||+|+.++....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 46799999999999999999996553
No 500
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=71.16 E-value=2.3 Score=45.87 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=21.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHHc
Q 003316 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (831)
Q Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~ 43 (831)
.+++.|.|+.|+|||||+.++....
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999996653
Done!